BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015870
(399 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/401 (86%), Positives = 377/401 (94%), Gaps = 4/401 (0%)
Query: 1 MAQVQA--QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD 58
MAQVQ QGQNVNGG ANA + TTSLYVGDLEANVTDS LYDLFNQ+GQVVSVRVCRD
Sbjct: 1 MAQVQVPVQGQNVNGG-ANA-PYVTTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRD 58
Query: 59 LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
L+TRRSLGYGYVN+S+ Q+AARAL+MLNFTPLNG PIR+MYSHRDPS+RKSG+GNIFIKN
Sbjct: 59 LTTRRSLGYGYVNYSSPQDAARALDMLNFTPLNGSPIRIMYSHRDPSVRKSGSGNIFIKN 118
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LDK IDHKALHDTFSAFGNILSCKVATD +GQSKGYGFVQFDNEESAQKAIEKLNGMLLN
Sbjct: 119 LDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
DKQVYVG FLRKQER++ I+K++F NVYVKNLSE+TTEEDL+K+FGEYGTITSAVVMRDG
Sbjct: 179 DKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDG 238
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
DGK+KCFGFVNFEN+DDAA AVEALNGKKFDDKEW+VGKAQKK+ERE ELK +FEQ+MKE
Sbjct: 239 DGKTKCFGFVNFENADDAATAVEALNGKKFDDKEWFVGKAQKKNERENELKVRFEQSMKE 298
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358
AADKFQGANLYIKNLDDSI D++LKQLFSPFG+ITSCKVMRDP+GISRGSGFVAFSTPEE
Sbjct: 299 AADKFQGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEE 358
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
AS+AL+EMNGKMVVSKPLYVALAQRKEDRRARLQ Q R
Sbjct: 359 ASKALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIR 399
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/401 (85%), Positives = 372/401 (92%), Gaps = 3/401 (0%)
Query: 1 MAQVQA--QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD 58
MAQVQ Q Q+VN G N N F TTSLYVGDLEA+VTDSQLYDLFNQ+GQVVSVRVCRD
Sbjct: 1 MAQVQVPVQPQSVNAGANNPN-FVTTSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRD 59
Query: 59 LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
L++RRSLGYGYVN+SN Q+AARALEMLNFTPLNG PIRVMYSHRDP++RKSGAGNIFIKN
Sbjct: 60 LTSRRSLGYGYVNYSNPQDAARALEMLNFTPLNGSPIRVMYSHRDPTIRKSGAGNIFIKN 119
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LDKAIDHKALHDTFSAFGNILSCKVATD +GQSKGYGFVQFD+EE+AQKAIEKLNGMLLN
Sbjct: 120 LDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLN 179
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
DKQVYVG FLRKQERDT +K +F NV+VKNLSE+TTEEDL K+FGE+GTITS VVMRDG
Sbjct: 180 DKQVYVGPFLRKQERDTATDKMRFNNVFVKNLSETTTEEDLNKTFGEFGTITSIVVMRDG 239
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
DGKSKCFGFVNFEN++DAA+AVEALNGKK DDKEW+VGKAQKK ERE+ELK +FEQ+MKE
Sbjct: 240 DGKSKCFGFVNFENAEDAAKAVEALNGKKIDDKEWFVGKAQKKYEREVELKQRFEQSMKE 299
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358
AADKFQGANLYIKNLDDSI DEKLK+LFSPFG+ITSCKVMRDP+GISRGSGFVAFSTPEE
Sbjct: 300 AADKFQGANLYIKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEE 359
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
ASRALLEMNGK+VVSKPLYVALAQRKEDRRARLQ Q R
Sbjct: 360 ASRALLEMNGKIVVSKPLYVALAQRKEDRRARLQAQFSQMR 400
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/406 (82%), Positives = 368/406 (90%), Gaps = 7/406 (1%)
Query: 1 MAQVQAQGQNV-------NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV 53
MAQVQ QN G G NQF TTSLYVGDL+ NVTD+QLYDLFNQ+GQVVSV
Sbjct: 1 MAQVQVPPQNAMPGPNGGGGAGGAGNQFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSV 60
Query: 54 RVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN 113
RVCRDL++RRSLGYGYVNFSN Q+AARAL++LNFTPLN +PIR+MYSHRDPS+RKSG GN
Sbjct: 61 RVCRDLTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGN 120
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
IFIKNLD+AIDHKALHDTFS FGNILSCKVATD +GQSKGYGFVQFDNEESAQKAIEKLN
Sbjct: 121 IFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLN 180
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GMLLNDKQVYVG FLRKQER++ +K+KF NV+VKNLSESTT+++L+ +FGE+GTITSAV
Sbjct: 181 GMLLNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAV 240
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
VMRDGDGKSKCFGFVNFEN+DDAARAVEALNGK FDDKEWYVGKAQKKSERE ELK +FE
Sbjct: 241 VMRDGDGKSKCFGFVNFENADDAARAVEALNGKNFDDKEWYVGKAQKKSERENELKQRFE 300
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
Q+MKEAADK+QGANLY+KNLDDSI DEKLK+LFSPFG+ITSCKVMRDP+G+SRGSGFVAF
Sbjct: 301 QSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAF 360
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
STPEEASRALLEMNGKMVVSKPLYV LAQRKEDRRARLQ Q R
Sbjct: 361 STPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMR 406
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/404 (83%), Positives = 369/404 (91%), Gaps = 10/404 (2%)
Query: 3 QVQAQGQN-VNG------GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV 55
QVQAQ QN ++G GGAN F TTSLYVGDL+ NVTDSQLYD+FNQ+GQVVSVRV
Sbjct: 4 QVQAQPQNAISGINPAANGGAN---FVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
Query: 56 CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIF 115
CRDL+TRRSLGYGYVN+SN Q+AARAL++LNFTPLNGKPIRVMYSHRDPS+RKSGAGNIF
Sbjct: 61 CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
IKNLDKAIDHKALHDTFSAFG+ILSCKVA D +GQSKGYGFVQFDNEESA KAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM 180
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
LLNDKQVYVG FLRKQERD ++KSKF NV+VKNLSE+TTEEDL K+F E+GT+TS VVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
RD DGKS+CFGFVNFEN+DDAARAV+ LNGK DDKEWYVGKAQKKSERE+ELKH+FEQ
Sbjct: 241 RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST 355
MKEAADK+QGANLYIKNLDDSI D+KLK+LF+PFG+ITSCKVMRDP+GISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360
Query: 356 PEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
P+EASRAL+EMNGKMVVSKPLYVALAQRKEDRRARLQ Q R
Sbjct: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIR 404
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/403 (83%), Positives = 371/403 (92%), Gaps = 4/403 (0%)
Query: 1 MAQVQAQGQNV----NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVC 56
MAQVQ QN NGGGA NQF TTSLYVGDL+ NVTD+QLYDLFNQ+GQVVSVRVC
Sbjct: 1 MAQVQVPPQNAIPGPNGGGAAGNQFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVC 60
Query: 57 RDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFI 116
RDL++RRSLGYGYVNFSN Q+AARAL++LNFTPLN +PIR+MYSHRDPS+RKSG GNIFI
Sbjct: 61 RDLTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFI 120
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLD+AIDHKALHDTFS FGNILSCKVATD +GQSKGYGFVQFDNEESAQKAIEKLNGML
Sbjct: 121 KNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGML 180
Query: 177 LNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
LNDKQVYVG FLRKQER++ +K+KF NV+VKNLSESTT+++L+ FGE+GTITSAVVMR
Sbjct: 181 LNDKQVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMR 240
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
DGDGKSKCFGFVNFEN+DDAARAVEALNGKKFDDKEWYVGKAQKKSERE ELK +FEQ+M
Sbjct: 241 DGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSM 300
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
KEAADK+QGANLY+KNLDDS+ D+KLK+LFSPFG+ITSCKVMRDP+GISRGSGFVAFSTP
Sbjct: 301 KEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTP 360
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
+EASRALLEMNGKMVVSKPLYV LAQRKEDRRARLQ Q R
Sbjct: 361 DEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMR 403
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/400 (85%), Positives = 372/400 (93%), Gaps = 5/400 (1%)
Query: 1 MAQVQ--AQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD 58
MAQVQ AQ QNVNGG N N F TTSLYVGDLEANVTDSQLYDLFNQ+GQVVSVRVCRD
Sbjct: 1 MAQVQVPAQPQNVNGGANNPN-FVTTSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRD 59
Query: 59 LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
L++RRSLGYGYVN+SN Q+AARALE+LNFTP+NG PIRVMYSHRDPS+RKSGAGNIFIKN
Sbjct: 60 LTSRRSLGYGYVNYSNPQDAARALEVLNFTPVNGSPIRVMYSHRDPSVRKSGAGNIFIKN 119
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LDKAIDHKALHDTFS FGNILSCKVATD +GQSKGYGFVQFD+EE+AQKAIEKLNGMLLN
Sbjct: 120 LDKAIDHKALHDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLN 179
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
DKQVYVG FLRKQERDT +K++F NV+VKNLSE+T EEDL K+FGE+GTITS VVMRDG
Sbjct: 180 DKQVYVGPFLRKQERDTATDKTRFNNVFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDG 239
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
DGKS+CFGFVNFEN+DDAA+A EALNGKKFDDKEW+VGKAQKK ERE+ELK +FEQ+MKE
Sbjct: 240 DGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKE 299
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358
AADKFQGANLYIKNLDDSI DEK+K+LFSPFG+ITSCKVMRDP+GISRGSGFVAFSTPEE
Sbjct: 300 AADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEE 359
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQC 398
ASRALLEMNGKMV SKPLYVALAQRKEDRRARL L+C
Sbjct: 360 ASRALLEMNGKMVASKPLYVALAQRKEDRRARL--SFLKC 397
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/409 (80%), Positives = 364/409 (88%), Gaps = 10/409 (2%)
Query: 1 MAQVQAQGQNVNGGG----------ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQV 50
MAQVQ Q QN G F TTSLYVGDL+ NVTDSQLYDLFNQ+GQV
Sbjct: 1 MAQVQVQPQNAMTGPNGGAAAAAAAGGGGNFVTTSLYVGDLDMNVTDSQLYDLFNQLGQV 60
Query: 51 VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSG 110
VSVRVCRDL+TRRSLGYGYVN+SN Q+AARAL++LNFTPLN +PIR+MYSHRDPS+RKSG
Sbjct: 61 VSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSG 120
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE 170
GNIFIKNLDKAIDHKALHDTFS+FGNILSCKVA D +GQSKGYGFVQFD EE+AQKAIE
Sbjct: 121 QGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIE 180
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
KLNGMLLNDKQVYVG FLRKQER++ +++KF NV+VKNLSESTT+++L+K+FGE+GTIT
Sbjct: 181 KLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTIT 240
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
SAVVMRDGDGKSKCFGFVNFE++DDAARAVEALNGKK DDKEWYVGKAQKKSERE ELK
Sbjct: 241 SAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKI 300
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+FEQ+MKEAADK+QGANLY+KNLDDSI DEKLK+LFS +G+ITSCKVMRDP+G+SRGSGF
Sbjct: 301 KFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGF 360
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
VAFSTPEEASRALLEMNGKMV SKPLYV LAQRKEDRRARLQ Q R
Sbjct: 361 VAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRARLQAQFAQMR 409
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/403 (80%), Positives = 355/403 (88%), Gaps = 5/403 (1%)
Query: 2 AQVQAQGQNVNGGGANAN-----QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVC 56
AQVQ Q Q A QF TTSLYVGDLE NV DSQLYDLF+QMG VVSVRVC
Sbjct: 3 AQVQVQPQGPGPAPNGAAGAGGNQFVTTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVC 62
Query: 57 RDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFI 116
RDLSTRRSLGYGYVN+SN Q+AARAL++LNFTPLNGKPIR+MYSHRDPS+RKSG GNIFI
Sbjct: 63 RDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFI 122
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK IDHKALHDTFSAFGNILSCKVATD +G SKG+GFVQFD+EE+AQKAI+KLNGML
Sbjct: 123 KNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGML 182
Query: 177 LNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
LNDKQV+VG F+RKQER++ INK KF NV+VKN+SE TEEDL + FGE+G ITS VVMR
Sbjct: 183 LNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMR 242
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
DGDGKSKCFGFVNFEN DDAA +VEALNG+KFDDKEWYVGKAQKKSERE+ELK +FEQNM
Sbjct: 243 DGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNM 302
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
KEA DKFQGANLYIKNLDDSI D+KLK+LF+ FG+ITSCKVMRDP+G+SRGSGFVAFS+P
Sbjct: 303 KEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSP 362
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
EEASRAL EMN KMVVSKPLYVALAQRKEDRRARLQ Q R
Sbjct: 363 EEASRALAEMNSKMVVSKPLYVALAQRKEDRRARLQAQFSQMR 405
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/404 (78%), Positives = 362/404 (89%), Gaps = 5/404 (1%)
Query: 1 MAQVQAQGQNVNGGG-----ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV 55
MAQV Q Q N G ANQ TTSLYVGDL+ NVTDSQLYDLFNQ+GQVVSVRV
Sbjct: 1 MAQVPPQPQVPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRV 60
Query: 56 CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIF 115
CRDL++RRSLGYGYVN+SN +A+RAL++LNFTPLNG PIRVMYSHRDPS+RKSG+GNIF
Sbjct: 61 CRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIF 120
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
IKNLDKAIDHKALHDTFSAFG+ILSCKVATD +GQSKG+GFVQFD EE+A KAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGM 180
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
LLNDKQV+VG FLRKQER++ K+KF NV+VKNL+E+T+EEDL+ FGE+G ITS VVM
Sbjct: 181 LLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVM 240
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
RDG+GKSKCFGFVNFEN+DDAAR+VEALNGKK D KEWYVGKAQKKSERE+ELK +FEQ+
Sbjct: 241 RDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQS 300
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST 355
+KEAADK+QGANLY+KNLDDSIDD+KLK+LF+ FG+ITSCKVMRDP+GISRGSGFVAFS+
Sbjct: 301 VKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSS 360
Query: 356 PEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
PEEA+RAL EMNG+M+VSKPLYVALAQRKEDRRARLQ Q +
Sbjct: 361 PEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQ 404
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/379 (83%), Positives = 345/379 (91%), Gaps = 1/379 (0%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ TSLYVGDL+ NVTDSQLYD+FNQ+GQVVSVRVCRDL+TRRSLGYGYVN+++ Q+AAR
Sbjct: 34 YMPTSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAAR 93
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL++LNFTP N KPIR+MYSHRDPS+RKSG GNIFIKNLDK IDHKALHDTFS+FGNILS
Sbjct: 94 ALDILNFTPFNNKPIRIMYSHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFGNILS 153
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD +GQS+GYGFVQFDNEE+AQ AI+KLNGMLLNDKQVYVGHFLRK ERD+ NK
Sbjct: 154 CKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNK- 212
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NVYVKNLSESTTEEDL+ FGEYG ITSAV+MRD DGKSKCFGFVNFEN+D AA+AV
Sbjct: 213 KFNNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAV 272
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E+LNGKK DDKEWYVGKAQKKSERELELK QFEQ+MKEA DK+QG NLYIKNLDDSI DE
Sbjct: 273 ESLNGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDE 332
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
LK+LFS FG ITSCKVMRDPSGISRGSGFVAFSTPEEASRAL EMNGKMVVSKPLYVAL
Sbjct: 333 NLKELFSDFGMITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVAL 392
Query: 381 AQRKEDRRARLQVCLLQCR 399
AQRKE+RRARLQ Q R
Sbjct: 393 AQRKEERRARLQAQFSQMR 411
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/404 (78%), Positives = 361/404 (89%), Gaps = 5/404 (1%)
Query: 1 MAQVQAQGQNVNGGG-----ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV 55
MAQV Q Q N G ANQ TTSLYVGDL+ NVTDSQLYDLFNQ+GQVVSVRV
Sbjct: 1 MAQVPPQPQVPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRV 60
Query: 56 CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIF 115
CRDL++RRSLGYGYVN+SN +A+RAL++LNFTPLNG PIRVMYSHRDPS+RKSG+GNIF
Sbjct: 61 CRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIF 120
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
IKNLDKAIDHKALHDTFSAFG+ILSCKVATD +GQSKG+GFVQFD EE+A KAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGM 180
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
LLNDKQV+VG FLRKQER++ K+KF NV+VKNL+E+T+EEDL+ FGE+G ITS VVM
Sbjct: 181 LLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVM 240
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
RDG+GKSKCFGFVNFEN+DDAAR+VEALNGKK D KEWYVGKAQKKSERE+ELK +FEQ+
Sbjct: 241 RDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQS 300
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST 355
+KEAADK+QGANLY+KNLDDSIDD+KLK+LF+ FG+ITSCKVMRDP+GISRGSGFVAFS+
Sbjct: 301 VKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSS 360
Query: 356 PEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
PEEA+RAL EMNG+M+VSKPLYVALAQRKEDR ARLQ Q +
Sbjct: 361 PEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQAQFSQMQ 404
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/410 (77%), Positives = 360/410 (87%), Gaps = 11/410 (2%)
Query: 1 MAQVQAQGQNV-------NGGGANA----NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ 49
MA++Q Q Q+ NGG ANA NQF TTSLYVGDL+ NV DSQLYDLFNQ+GQ
Sbjct: 1 MAEIQVQHQSPVSAAPPPNGGVANAPNNANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQ 60
Query: 50 VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKS 109
VVSVRVCRDL+TRRSLGYGYVNFSN Q+AARAL++LNFTPLN + IR+MYSHRDPSLRKS
Sbjct: 61 VVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRSIRIMYSHRDPSLRKS 120
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
G NIFIKNLDKAIDHKALHDTFS+FG ILSCK+ATD +G SKGYGFVQFDNEE+AQ AI
Sbjct: 121 GTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDNEEAAQNAI 180
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
+KLNGML+NDKQVYVGHFLRKQ+R+ ++K+KF NVYVKNLSESTT+E+L +FGEYGTI
Sbjct: 181 DKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMINFGEYGTI 240
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
TSA++MRD DGKS+CFGFVNFEN DDAA+AVE LNGKKFDDKEWYVGKAQKKSERE ELK
Sbjct: 241 TSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQELK 300
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+FEQ++KEAADK+ G NLY+KNLDD+I DEKLK++F+ +G+ITSCKVMRDP+GISRGSG
Sbjct: 301 GRFEQSIKEAADKYPGLNLYLKNLDDTISDEKLKEMFADYGTITSCKVMRDPTGISRGSG 360
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
FVAFSTPEEA+RAL EMNGKM KPLYVALAQRKE+RRARLQ Q R
Sbjct: 361 FVAFSTPEEATRALGEMNGKMFAGKPLYVALAQRKEERRARLQAQFSQMR 410
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/408 (76%), Positives = 362/408 (88%), Gaps = 13/408 (3%)
Query: 1 MAQVQAQGQNV---------NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV 51
M+QVQ+Q Q NGG NQF +TSLYVGDLE NVT++QLYDLFNQ+GQ+V
Sbjct: 1 MSQVQSQPQGPVSAPVGMASNGG----NQFVSTSLYVGDLEQNVTETQLYDLFNQLGQIV 56
Query: 52 SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGA 111
S+RVCRDL++RRSLGYGYVN++N +AA+ALE+LNFTP+NGKPIR+MYS+RDP++RKSGA
Sbjct: 57 SIRVCRDLTSRRSLGYGYVNYNNVHDAAQALEVLNFTPVNGKPIRIMYSYRDPTIRKSGA 116
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 171
GNI+IKNLDKAID+KALHDTFSAFGNILSCKVATD GQS GYGFVQFDNEESA+ AI+K
Sbjct: 117 GNIYIKNLDKAIDNKALHDTFSAFGNILSCKVATDSAGQSLGYGFVQFDNEESAKNAIDK 176
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LNGMLLNDKQVYVG FLR+QER++ +K+KF NVYVKNLSE+TTEEDL+K FGEYG ITS
Sbjct: 177 LNGMLLNDKQVYVGPFLRRQERESGTDKTKFNNVYVKNLSETTTEEDLKKIFGEYGAITS 236
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
AVVMRDGDGKS+CFGFVNFEN DDAAR+VEALNGK FD+KEWYVGKAQKKSERE+ELK Q
Sbjct: 237 AVVMRDGDGKSRCFGFVNFENPDDAARSVEALNGKTFDEKEWYVGKAQKKSEREVELKGQ 296
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
FEQ +KE DKF+G NLY+KNLDDSI D+KLK+LFS FG+ITSCKVMRDP+G+S+GSGFV
Sbjct: 297 FEQTLKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSKGSGFV 356
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
A+ST EEAS+AL EMNGKM+VSKPLYVALAQRKE+RRARLQ Q R
Sbjct: 357 AYSTAEEASKALTEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMR 404
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/387 (80%), Positives = 348/387 (89%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
G A QF TSLYVGDL+ NVTDSQLYD+FNQ+GQVVSVRVCRDLSTRRSLGYGYVN+
Sbjct: 1 AAGPGAIQFVPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNY 60
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
SN Q+AARAL++LNFTPLN KPIR+MYSHRDPS+RKSG NIFIKNLDK IDHKALHDTF
Sbjct: 61 SNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTF 120
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S+FGNILSCKVATD +GQSKGYGFVQFD+EE+AQ AI+KLNGML+NDKQVYVGHFLRKQ+
Sbjct: 121 SSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQVYVGHFLRKQD 180
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
RD + KF NV+VKNL+ESTT+E+L+ F E+G ITSAVVMRD DGKSKCFGFVNFE+
Sbjct: 181 RDGALYSIKFNNVFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFES 240
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+DDAA+AVEALNGKK D +EWYVGKAQKKSERELELK +FEQ+MKE DKFQG NLYIKN
Sbjct: 241 ADDAAKAVEALNGKKIDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKFQGLNLYIKN 300
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
LDDSI+DEKLK+LFS FG+ITSCKVMRDPSGISRGSGFVAFSTPEEASRAL EMNGKM++
Sbjct: 301 LDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMLI 360
Query: 373 SKPLYVALAQRKEDRRARLQVCLLQCR 399
SKPLYVALAQRKE+RRARLQ Q R
Sbjct: 361 SKPLYVALAQRKEERRARLQAQFSQMR 387
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/404 (78%), Positives = 360/404 (89%), Gaps = 5/404 (1%)
Query: 1 MAQVQAQGQNV----NGGGAN-ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV 55
MAQVQ Q Q NG +N NQF TSLYVGDLE NVT++QLYDLFNQ GQVVS+RV
Sbjct: 1 MAQVQVQPQAPVSAPNGVVSNGVNQFVPTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRV 60
Query: 56 CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIF 115
CRDL++RRSLGYGYVN++N +AA+A+E+LNFTP+NGKPIR+MYS+RDP++RKSG GNI+
Sbjct: 61 CRDLTSRRSLGYGYVNYNNVHDAAQAIEVLNFTPVNGKPIRIMYSYRDPTIRKSGTGNIY 120
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
IKNLDKAID+KALHDTFSAFG+ILSCKVATD GQS GYGFVQFDNEESA+ AI+KLNGM
Sbjct: 121 IKNLDKAIDNKALHDTFSAFGSILSCKVATDSLGQSLGYGFVQFDNEESAKNAIDKLNGM 180
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
LLNDKQVYVG FLRKQER++ I+K+ F NVYVKNLSE+TTEEDL+K FGEYGTITSAVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERESAIDKATFNNVYVKNLSETTTEEDLKKIFGEYGTITSAVVM 240
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
RDG+GKS+CFGFVNFEN DDAA++VEALNGK FD+KEWYVGKAQKKSERE+ELK +FEQ
Sbjct: 241 RDGNGKSRCFGFVNFENPDDAAQSVEALNGKTFDEKEWYVGKAQKKSEREVELKGRFEQT 300
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST 355
+KE DKFQG NLY+KNLDDSI D+KLK+LFS FG+ITSCKVMRDP+G+SRGSGFVAFST
Sbjct: 301 LKETVDKFQGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSRGSGFVAFST 360
Query: 356 PEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
EEASRAL EMNGKMVVSKPLYVALAQRKE+RRARLQ Q R
Sbjct: 361 AEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQYSQIR 404
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/403 (76%), Positives = 357/403 (88%), Gaps = 12/403 (2%)
Query: 1 MAQVQAQGQNVNG------------GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMG 48
MAQVQ QGQ NG GGA A FGTTSLYVGDL+ NVTDSQL+D F+QMG
Sbjct: 1 MAQVQLQGQTPNGSTVAVTSAPVTSGGATAAGFGTTSLYVGDLDVNVTDSQLFDAFSQMG 60
Query: 49 QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK 108
VVSVRVCRDL+TRRSLGYGYVNF+N Q+AARA++ LN+ PL GKPIRVMYSHRDPS+R+
Sbjct: 61 PVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRR 120
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
SGAGNIFIKNLD++IDHKALHDTFS FGNI+SCKVA D +GQSKGYGFVQ+ NEESAQKA
Sbjct: 121 SGAGNIFIKNLDESIDHKALHDTFSVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKA 180
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
IEKLNGMLLNDKQVYVG FLR+QERD+ NK+KFTNVYVKNL+ESTT++DL+ +FGEYG
Sbjct: 181 IEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
ITSAVVM+DGDGKSK FGFVNFEN+DDAARAVE+LNG KFDDKEWYVG+AQKKSERE EL
Sbjct: 241 ITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 300
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
+ ++EQN+KEAADKFQ +NLY+KNLD SI DEKLK++FSPFG++TSCKVMRDP+G S+GS
Sbjct: 301 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKGS 360
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
GFVAFSTPEEA+ A+ +++GKM+ SKPLYVA+AQRKEDRRA+
Sbjct: 361 GFVAFSTPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRAQF 403
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 157/285 (55%), Gaps = 17/285 (5%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKA 168
G ++++ +LD + L D FS G ++S +V DL +S GYG+V F N + A +A
Sbjct: 34 GTTSLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARA 93
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
I++LN + L K + V + RD + +S N+++KNL ES + L +F +G
Sbjct: 94 IQELNYIPLYGKPIRVMY----SHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSVFGN 149
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
I S V D G+SK +GFV + N + A +A+E LNG +DK+ YVG ++ ER+
Sbjct: 150 IVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERD--- 206
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
A+K + N+Y+KNL +S D+ LK F +G ITS VM+D G S+G
Sbjct: 207 ---------STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKSKGF 257
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQV 393
GFV F ++A+RA+ +NG K YV AQ+K +R L+V
Sbjct: 258 GFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRV 302
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 111/202 (54%), Gaps = 17/202 (8%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+ AN+ T++YV +L + TD L + F + G++ S V +D +S G+G+VNF NA
Sbjct: 207 STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GDGKSKGFGFVNFENA 265
Query: 76 QEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR------------KSGAGNIFIKNL 119
+AARA+E LN + K V S R+ LR K + N+++KNL
Sbjct: 266 DDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNL 325
Query: 120 DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
D +I + L + FS FG + SCKV D NG SKG GFV F E A +A+ +L+G ++
Sbjct: 326 DPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKGSGFVAFSTPEEATEAMSQLSGKMIES 385
Query: 180 KQVYVGHFLRKQERDTEINKSK 201
K +YV RK++R + ++ +
Sbjct: 386 KPLYVAIAQRKEDRRAQFSQVR 407
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/377 (81%), Positives = 347/377 (92%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+TSLYVGDLE NVTDSQLYDLFNQ+GQVVSVRVCRDLSTRRSLGYGYVN+SN +A+RA+
Sbjct: 37 STSLYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAM 96
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
EMLNFTP+NGK IRVMYSHRDP+LRKSG+ NIFIKNLDK+ID+KALHDTFS+FGNILSCK
Sbjct: 97 EMLNFTPVNGKSIRVMYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFGNILSCK 156
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ATD NGQSKGYGFVQ+DNEESAQ AI+KLNGML+NDKQVYVGHFLRKQER++ +KF
Sbjct: 157 IATDSNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKF 216
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
NVYVKNLSESTT+++L+K FGE+G ITSAVVMRD DGKSKCFGF+NFE ++DAA+AVE+
Sbjct: 217 QNVYVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVES 276
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LNGKKFDDKEWYVGKAQKKSERE ELK +FEQ KEA DK+QG NLY+KNLDD+IDDEKL
Sbjct: 277 LNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKL 336
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K+LFS FG+ITSCKVMRDPSGISRGSGFVAFST EEASRAL EMNGKM+VSKPLYVALAQ
Sbjct: 337 KELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQ 396
Query: 383 RKEDRRARLQVCLLQCR 399
RKE+RRA+LQ Q R
Sbjct: 397 RKEERRAKLQAQFSQLR 413
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/406 (78%), Positives = 355/406 (87%), Gaps = 8/406 (1%)
Query: 1 MAQVQAQ-------GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV 53
MAQ+Q G N G A QF TSLYVGDL+ NVTDSQLYDLFNQ+GQVVSV
Sbjct: 1 MAQIQVHQAAAPVPGPNGVAAGPGAIQFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSV 60
Query: 54 RVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN 113
RVCRDLSTRRSLGYGYVN+SN Q+AARAL++LNFTPLN KP+R+MYSHRDPS+RKSG N
Sbjct: 61 RVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPLRIMYSHRDPSIRKSGMAN 120
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
IFIKNLDK IDHKALHDTFS+FGNILSCKVATD +GQSKGYGFVQFD+EE+AQ AI+KLN
Sbjct: 121 IFIKNLDKTIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLN 180
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML+NDKQVYVG+FLRKQERD+ ++ KF N+YVKNL+ESTT+EDL+ F E+G ITSAV
Sbjct: 181 GMLINDKQVYVGNFLRKQERDSALSNIKFNNIYVKNLAESTTDEDLKSIFEEHGAITSAV 240
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
VMRD DGKSKCFGFVNFEN DDAA+AVEALNGKKFDDKEWYVGKAQKKSERELELK +FE
Sbjct: 241 VMRDADGKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVGKAQKKSERELELKGRFE 300
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
Q++ E+ +K+Q NLYIKNLDDS++DEKLK+LFS FG+ITSCKVM DPSGISRGSGFVAF
Sbjct: 301 QSL-ESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGISRGSGFVAF 359
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
STPEEASRAL E+NGKMVVSKPLYVA AQRKE+RRARLQ Q R
Sbjct: 360 STPEEASRALAELNGKMVVSKPLYVAPAQRKEERRARLQAQFSQMR 405
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/411 (75%), Positives = 358/411 (87%), Gaps = 12/411 (2%)
Query: 1 MAQVQAQGQNVNG------------GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMG 48
MAQVQ QGQ NG GGA A QFG TSLYVGDL+ NVTDSQL+D F QMG
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMG 60
Query: 49 QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK 108
VV+VRVCRDL TRRSLGYGYVNF+N Q+AARA++ LN+ PL GKPIRVMYSHRDPS+R+
Sbjct: 61 TVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRR 120
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
SGAGNIFIKNLD++IDHKALHDTFS+FGNI+SCKVA D +GQSKGYGFVQ+ NEESAQKA
Sbjct: 121 SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKA 180
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
IEKLNGMLLNDKQVYVG FLR+QERD+ NK+KFTNVYVKNL+ESTT++DL+ +FGEYG
Sbjct: 181 IEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
ITSAVVM+DG+GKSK FGFVNFEN+DDAARAVE+LNG KFDDKEWYVG+AQKKSERE EL
Sbjct: 241 ITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 300
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
+ ++EQN+KEAADKFQ +NLY+KNLD SI DEKLK++FSPFG++TS KVMRDP+G S+GS
Sbjct: 301 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS 360
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
GFVAF+TPEEA+ A+ +++GKM+ SKPLYVA+AQRKEDRR RLQ Q R
Sbjct: 361 GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVR 411
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/399 (81%), Positives = 356/399 (89%), Gaps = 6/399 (1%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
MAQ+QA V G AN T SLYVGDL+ N+TDSQLYDLF Q GQV+SVRVCRDLS
Sbjct: 1 MAQIQAA---VAGPNGVAN---TASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLS 54
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
TRRSLGYGYVN+SN Q+AARAL++LNFTPLNGKPIR+MYSHRDPS+RKSG NIFIKNLD
Sbjct: 55 TRRSLGYGYVNYSNPQDAARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLD 114
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
K+ID+KALHDTFSAFGNILSCK+ATD +GQSKGYGFVQFDNEESAQ AI+KLNGML+NDK
Sbjct: 115 KSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDK 174
Query: 181 QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
QVYVG FLRKQER+T +NK+KF NVYVKNLSESTTEEDL+ FGE+G ITS VVMRDGDG
Sbjct: 175 QVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDG 234
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSKCFGFVNFEN+DDAA AVEALNGKKFD+KEWYVGKAQKK ERELELK +FEQ+MKE
Sbjct: 235 KSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVV 294
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
DKFQG NLYIKNLDDSI D+KLK+LFS FG+ITSCKVMRDPSGISRGSGFVAFST EEAS
Sbjct: 295 DKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEAS 354
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
RAL EMNGKMVVSKPLYVALAQRKE+RRARLQ Q R
Sbjct: 355 RALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 393
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/399 (81%), Positives = 356/399 (89%), Gaps = 6/399 (1%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
MAQ+QA V G AN T SLYVGDL+ N+TDSQLYDLF Q GQV+SVRVCRDLS
Sbjct: 1 MAQIQAA---VAGPNGVAN---TASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLS 54
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
TRRSLGYGYVN+SN Q+AARAL++LNFTPLNGKPIR+MYSHRDPS+RKSG NIFIKNLD
Sbjct: 55 TRRSLGYGYVNYSNPQDAARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLD 114
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
K+ID+KALHDTFSAFGNILSCK+ATD +GQSKGYGFVQFDNEESAQ AI+KLNGML+NDK
Sbjct: 115 KSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDK 174
Query: 181 QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
QVYVG FLRKQER+T +NK+KF NVYVKNLSESTTEEDL+ FGE+G ITS VVMRDGDG
Sbjct: 175 QVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDG 234
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSKCFGFVNFEN+DDAA AVEALNGKKFD+KEWYVGKAQKK ERELELK +FEQ+MKE
Sbjct: 235 KSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVV 294
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
DKFQG NLYIKNLDDSI D+KLK+LFS FG+ITSCKVMRDPSGISRGSGFVAFST EEAS
Sbjct: 295 DKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEAS 354
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
RAL EMNGKMVVSKPLYVALAQRKE+RRARLQ Q R
Sbjct: 355 RALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 393
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/388 (79%), Positives = 353/388 (90%), Gaps = 2/388 (0%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
N GG N NQF TSLYVGDL+ NVTDSQLYDLFNQ+GQVVSVRVCRDL+++RSLGYGYVN
Sbjct: 17 NAGGVN-NQF-VTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVN 74
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ N Q+AARALE+LNFTPL+GKPIR+MYS+RDP++R+SG GNIFIKNLDKAIDHKALHDT
Sbjct: 75 YGNPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDT 134
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFGNILSCKVA D +GQSKGYGFVQ+D+EE+AQKAIEKLNGMLLNDKQVYVG F+RK
Sbjct: 135 FSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGPFVRKH 194
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
ERD ++K++FTNV+VKNLSEST EE+L+K FGE+G ITS VM+D DGKS+CFGFVNFE
Sbjct: 195 ERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFE 254
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N++DAARAVEALNG K D+K+W+VG+AQKKSERE+ELKH+FEQ+ KEA DK QG NLYIK
Sbjct: 255 NAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYIK 314
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDDSI DEKLK+LFSP+G+ITSCKVMRDPSG+S+GSGFVAFS PEEASRAL EMNGKMV
Sbjct: 315 NLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMV 374
Query: 372 VSKPLYVALAQRKEDRRARLQVCLLQCR 399
VSKPLYVALAQRKE+RRARLQ Q R
Sbjct: 375 VSKPLYVALAQRKEERRARLQAQFSQMR 402
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/388 (79%), Positives = 356/388 (91%), Gaps = 2/388 (0%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
N GG N NQF TSLYVGDL+ NVTDSQLYDLFNQ+GQVVSVRVCRDL+++RSLGYGYVN
Sbjct: 17 NAGGVN-NQF-VTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVN 74
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ N Q+AARALE+LNFTPL+GKPIR+MYS+RDP++R+SG GNIFIKNLDKAIDHKALHDT
Sbjct: 75 YGNPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDT 134
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFGNILSCKVA D +GQSKGYGFVQ+D++E+AQKAIEKLNGMLLNDKQVYVG F+RKQ
Sbjct: 135 FSAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGPFVRKQ 194
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
ERD ++K++FTNV+VKNLSEST EE+L+K FGE+GTITS VM+D DGKS+CFGFVNFE
Sbjct: 195 ERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFE 254
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N++DAARAVEALNG K D+K+W+VG+AQKKSERE+ELKH+FEQ+ +EA DK QG NLY+K
Sbjct: 255 NAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLK 314
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDDSI D+KLK+LFSP+G+ITSCKVMRDPSG+S+GSGFVAFSTPEEASRAL EMNGKMV
Sbjct: 315 NLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMNGKMV 374
Query: 372 VSKPLYVALAQRKEDRRARLQVCLLQCR 399
VSKPLYVALAQRKE+RRARLQ Q R
Sbjct: 375 VSKPLYVALAQRKEERRARLQAQFSQMR 402
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/415 (76%), Positives = 358/415 (86%), Gaps = 16/415 (3%)
Query: 1 MAQVQAQGQNV----------------NGGGANANQFGTTSLYVGDLEANVTDSQLYDLF 44
MAQVQ Q Q NGG +A QF +TSLYVGDL+ +V DSQLYDLF
Sbjct: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
Query: 45 NQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 104
NQMGQVVSVRVCRDLSTRRSLGYGYVN++ A EA RAL+ LNFTPLNGKPIR+MYS+RDP
Sbjct: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
Query: 105 SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEES 164
++RKSGAGNIFIKNLDK+ID+KALHDTFS FGNILSCKVATD GQS+GYGFVQFDNEES
Sbjct: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A+ AI+KLNGMLLNDKQV+VG FLRKQER++ +K++F NVYVKNLSE+TTE+DL+K FG
Sbjct: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
E+G ITS VMRD DGKSKCFGFVNF++ DDAAR+VEALNGKKFDDKEWYVGKAQKK ER
Sbjct: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
E+ELK +FEQ++KE ADKF+G NLY+KNLDDSI D+KLK+LFS FG+ITSCKVMRDP+GI
Sbjct: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
SRGSGFVAFST EEAS+AL EMNGKMVVSKPLYVALAQRKE+RRARLQ Q R
Sbjct: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/380 (81%), Positives = 345/380 (90%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
QF +TSLYVGDLE+NVTDS LYDLF Q+G VVSVRVCRDLSTRRSLGYGYVN+ N Q+AA
Sbjct: 28 QFVSTSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAA 87
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RAL+MLNFTPLNGKPIR+MYS RDPS+R+SG NIFIKNLDKAID+KAL+DTFS FG IL
Sbjct: 88 RALDMLNFTPLNGKPIRIMYSFRDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFGAIL 147
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
SCK+ATD +GQSKGYGFVQFDNEESA+ A +KLNGMLLNDKQVYVG F+RKQER++ NK
Sbjct: 148 SCKIATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPFVRKQERESATNK 207
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+KF NVYVKNL ESTT+EDL+ FGEYG ITSAVVM+DGDGKSKCFGFVNFEN+DDAAR+
Sbjct: 208 TKFNNVYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAARS 267
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VEALNGKKFDDKEWYVGKAQKK+ERE+ELK +FEQ++KEA DKFQG NLY+KNLDDSI D
Sbjct: 268 VEALNGKKFDDKEWYVGKAQKKTEREVELKGRFEQSLKEAVDKFQGLNLYVKNLDDSIAD 327
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+KL++LFS FG+ITSCKVMRDP+GISRGSGFVAFST EEASRAL +MNGKMV SKPLYVA
Sbjct: 328 DKLRELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASRALADMNGKMVASKPLYVA 387
Query: 380 LAQRKEDRRARLQVCLLQCR 399
LAQRKEDRRARLQ Q R
Sbjct: 388 LAQRKEDRRARLQAQFSQMR 407
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/403 (77%), Positives = 355/403 (88%), Gaps = 4/403 (0%)
Query: 1 MAQVQAQGQNVNGGGANAN----QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVC 56
MA+VQ ++G N +F + SLYVGDL+ NVTDSQL+DLF+Q+ QVVS+RVC
Sbjct: 142 MAEVQDHEGLLSGTNDEPNIGPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVC 201
Query: 57 RDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFI 116
RD +T RSLGYGYVN+++ ++AARAL++LNFTPLNGKPIR+MYSHRDPS+RKSG GNIFI
Sbjct: 202 RDSTTHRSLGYGYVNYTDLEDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFI 261
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK IDHKALHDTFSAFGNILSCKVATD +G SKG+GFVQFD+EE+AQKAI+KLNGML
Sbjct: 262 KNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGML 321
Query: 177 LNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
LNDKQV+VG F+RKQER++ INK KF NV+VKN+SE TEEDL + FGE+G ITS VVMR
Sbjct: 322 LNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMR 381
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
DGDGKSKCFGFVNFEN DDAA +VEALNG+KFDDKEWYVGKAQKKSERE+ELK +FEQNM
Sbjct: 382 DGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNM 441
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
KEA DKFQGANLYIKNLDDSI D+KLK+LF+ FG+ITSCKVMRDP+G+SRGSGFVAFS+P
Sbjct: 442 KEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSP 501
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
EEASRAL EMN KMVVSKPLYVALAQRKEDRRARLQ Q R
Sbjct: 502 EEASRALAEMNSKMVVSKPLYVALAQRKEDRRARLQAQFSQMR 544
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 159/448 (35%), Positives = 229/448 (51%), Gaps = 73/448 (16%)
Query: 2 AQVQAQGQNVNGGGANAN-----QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVC 56
AQVQ Q Q A QF TTSLYVGDLE NV DSQLYDLF+QMG VVSVRVC
Sbjct: 3 AQVQVQPQGPGPAPNGAAGAGGNQFVTTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVC 62
Query: 57 RDLSTRRSLGYGYVNFSNAQE--------------------------------------A 78
RDLSTRRSLGYGYVN+SN Q+
Sbjct: 63 RDLSTRRSLGYGYVNYSNPQDEKEKETIYEGFCVFCLIPSNYAIFFVLGFSYIHKKRRGK 122
Query: 79 ARALEM----LNFTPLNGKPIRVM-------YSHRDPSLRKS--GAGNIFIKNLDKAIDH 125
R E+ LNF + G+ V ++ +P++ S + ++++ +LD +
Sbjct: 123 ERGGELQKRELNFLRVGGEMAEVQDHEGLLSGTNDEPNIGPSRFASASLYVGDLDLNVTD 182
Query: 126 KALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
LHD FS ++S +V D +S GYG+V + + E A +A++ LN LN K + +
Sbjct: 183 SQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDLEDAARALDVLNFTPLNGKPIRI 242
Query: 185 GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ RD I KS N+++KNL + + L +F +G I S V D G SK
Sbjct: 243 MY----SHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKG 298
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
GFV F++ + A +A++ LNG +DK+ +VG +K ERE + + KF
Sbjct: 299 HGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKE----------KFN 348
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
N+++KN+ + + +E L ++F FG ITS VMRD G S+ GFV F ++A+ ++
Sbjct: 349 --NVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVE 406
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+NG+ K YV AQ+K +R L+
Sbjct: 407 ALNGQKFDDKEWYVGKAQKKSEREIELK 434
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/408 (77%), Positives = 355/408 (87%), Gaps = 9/408 (2%)
Query: 1 MAQVQAQGQNV-------NGGGAN-ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS 52
MAQ+Q Q Q NG N ANQF TTSLYVGDLE NV DSQLYDLFNQ+GQVVS
Sbjct: 1 MAQIQVQHQTPAPVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVS 60
Query: 53 VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG 112
VRVCRDL+TRRSLGYGYVNF+N Q+AARAL++LNFTP+N K IRVMYSHRDPS RKSG
Sbjct: 61 VRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTA 120
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
NIFIKNLDK IDHKALHDTFS+FG I+SCK+ATD +GQSKGYGFVQF+ E+SAQ AI+KL
Sbjct: 121 NIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
NGML+NDKQV+VGHFLRKQ+RD ++K+KF NVYVKNLSES TE+DL+ FG YGTITSA
Sbjct: 181 NGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSA 240
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V+MRD DG+SKCFGFVNFEN++DAA+AVEALNGKK DDKEWYVGKAQKKSERE ELK +F
Sbjct: 241 VLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRF 300
Query: 293 EQNMKEA-ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
EQ +KE+ DKFQG NLY+KNLDDSI DEKLK++FS FG+ITS K+MRDP+G+SRGSGFV
Sbjct: 301 EQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFV 360
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
AFSTPEEASRAL EMNGKM+VSKPLYVA+AQRKEDRRARLQ Q R
Sbjct: 361 AFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMR 408
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/386 (76%), Positives = 353/386 (91%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G A A QFGTTSLYVGDL+ NVTDSQL+D F+QMGQVVSVRVCRDL+TRRSLGYGYVNF+
Sbjct: 30 GAAAAAQFGTTSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFT 89
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
+ Q+AARA++ LN+ PLNGKP+RVMYSHRDPS+R+SGAGNIFIKNLDK+IDHKALHDTFS
Sbjct: 90 SPQDAARAIQELNYIPLNGKPVRVMYSHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFS 149
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FGNI+SCKVA D +GQSKGYGFVQ++ EESAQKA+ +LNGMLLNDKQVYVG FLR+QER
Sbjct: 150 VFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGPFLRRQER 209
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
D+ NK+ FTNVYVKNL+ESTT++DL+ FGE+G ITSAVVM+DG+GK K FGFVNFEN+
Sbjct: 210 DSTGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENA 269
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
DDAA+AVE+LNGK FDDKEW+VG+AQKKSERE+ELK Q+EQ++KEAADKFQ +NLY+KNL
Sbjct: 270 DDAAKAVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADKFQSSNLYVKNL 329
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDS+ DEKLK+LF+P+G++TSCKVMRDP+G+SRGSGFVAFSTPEEA++A+ EM+GKM+ +
Sbjct: 330 DDSVSDEKLKELFTPYGTVTSCKVMRDPNGMSRGSGFVAFSTPEEATKAMSEMSGKMIEN 389
Query: 374 KPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVA+AQRKEDRRARLQ Q R
Sbjct: 390 KPLYVAVAQRKEDRRARLQAQFSQMR 415
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/386 (77%), Positives = 348/386 (90%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GGA A QFG TSLYVGDL+ NVTDSQL+D F QMG VV+VRVCRDL TRRSLGYGYVNF+
Sbjct: 10 GGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFT 69
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N Q+AARA++ LN+ PL GKPIRVMYSHRDPS+R+SGAGNIFIKNLD++IDHKALHDTFS
Sbjct: 70 NPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFS 129
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+FGNI+SCKVA D +GQSKGYGFVQ+ NEESAQKAIEKLNGMLLNDKQVYVG FLR+QER
Sbjct: 130 SFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQER 189
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
D+ NK+KFTNVYVKNL+ESTT++DL+ +FGEYG ITSAVVM+DG+GKSK FGFVNFEN+
Sbjct: 190 DSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENA 249
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
DDAARAVE+LNG KFDDKEWYVG+AQKKSERE EL+ ++EQN+KEAADKFQ +NLY+KNL
Sbjct: 250 DDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNL 309
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
D SI DEKLK++FSPFG++TS KVMRDP+G S+GSGFVAF+TPEEA+ A+ +++GKM+ S
Sbjct: 310 DPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIES 369
Query: 374 KPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVA+AQRKEDRR RLQ Q R
Sbjct: 370 KPLYVAIAQRKEDRRVRLQAQFSQVR 395
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/408 (77%), Positives = 356/408 (87%), Gaps = 9/408 (2%)
Query: 1 MAQVQAQGQN---------VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV 51
MAQ+Q Q Q+ V N NQF TTSLYVGDLE NV D+QLYDLFNQ+ QVV
Sbjct: 1 MAQIQVQHQSPVSAPPPNGVANAPNNPNQFVTTSLYVGDLEQNVNDAQLYDLFNQVVQVV 60
Query: 52 SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGA 111
SVRVCRDL+TRRSLGYGYVNFSN Q+AARAL++LNFTPLN +PIR+MYSHRDPSLRKSG
Sbjct: 61 SVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSLRKSGT 120
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 171
NIFIKNLDKAIDHKALHDTFS+FG ILSCK+ATD +G SKGYGFVQFD+EESAQ AI+K
Sbjct: 121 ANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEESAQNAIDK 180
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LNGML+NDKQVYVGHFLRKQ+R+ ++K+KF NVYVKNLSESTT+E+L K FGEYGTITS
Sbjct: 181 LNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMKFFGEYGTITS 240
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
AV+MRD DGKS+CFGFVNFEN DDAA+AVE LNGKK DDKEWYVGKAQKKSERE ELK +
Sbjct: 241 AVIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGR 300
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
FEQ++KE+ADK+QG NLY+KNLDD+I DEKLK++F+ +G+ITSCKVMRDP+GI RGSGFV
Sbjct: 301 FEQSIKESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGIGRGSGFV 360
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
AFSTPEEASRAL EMNGKM+ KPLYVALAQRKEDRRARLQ Q R
Sbjct: 361 AFSTPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRARLQAQFSQMR 408
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/380 (79%), Positives = 348/380 (91%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
QF TTSLYVGDL+ +VTDSQLYDLFNQ+GQVVSVRVCRDLST RSLGYGYVN+SN Q+A
Sbjct: 36 QFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDAT 95
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RA+++LNFTPLN K IRV S RDP+ RKSGAGNIFIKNLDK+ID KALH+TFS+FG I+
Sbjct: 96 RAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTII 155
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
SCK+ATD +GQSKGYGFVQ+D+EE+AQ AI+KLNGML+NDKQVYVG FLRKQ+RD+E++K
Sbjct: 156 SCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSK 215
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+KF N+YVKNLS+ST+E+DL+K+FGEYGTITS VVMRD DGKSKCFGFVNFEN +DAA+A
Sbjct: 216 TKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKA 275
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ALNGKKFDDKEWYVGKAQKKSERE+ELK +FEQ +KE DK+QG NLY+KNLDD+IDD
Sbjct: 276 VDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDD 335
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
EKLK+LFS +G+ITSCKVMRDPSGISRGSGFVAFSTPEEASRAL EMNGKM+VSKPLYVA
Sbjct: 336 EKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVA 395
Query: 380 LAQRKEDRRARLQVCLLQCR 399
LAQRKE+RRARLQ Q R
Sbjct: 396 LAQRKEERRARLQAQFSQMR 415
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 301/414 (72%), Positives = 349/414 (84%), Gaps = 15/414 (3%)
Query: 1 MAQVQAQGQNVNGGGANAN---------------QFGTTSLYVGDLEANVTDSQLYDLFN 45
MAQ+Q QGQN NGG A Q GTTSLYVGDL+A VTDSQL++ F+
Sbjct: 1 MAQIQHQGQNANGGVAVPGAAAAAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFS 60
Query: 46 QMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPS 105
Q GQVVSVRVCRD++TRRSLGYGYVN++ Q+A+RAL LNF LNG+ IRVMYS RDPS
Sbjct: 61 QAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPS 120
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESA 165
LRKSG GNIFIKNLDK+IDHKALH+TFSAFG ILSCKVA D +GQSKGYGFVQ+D +E+A
Sbjct: 121 LRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAA 180
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGE 225
Q+AI+KLNGMLLNDKQVYVG F+ K +RD K KFTNVYVKNLSES ++E+L K FGE
Sbjct: 181 QRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGE 240
Query: 226 YGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
+G TS V+MRDG+GKSK FGFVNFENSDDAARAV+ALNGK FDDKEW+VGKAQKKSERE
Sbjct: 241 FGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERE 300
Query: 286 LELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS 345
ELK +FEQ++KEAADK QG+NLY+KNLD+S+ D+KL++ F+PFG+ITSCKVMRDP+G+S
Sbjct: 301 TELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPTGVS 360
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
RGSGFVAFSTPEEASRA+ EMNGKM+V+KPLYVALAQRKEDR+ARLQ Q R
Sbjct: 361 RGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMR 414
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 301/420 (71%), Positives = 347/420 (82%), Gaps = 21/420 (5%)
Query: 1 MAQVQAQGQNVNGGGANAN---------------------QFGTTSLYVGDLEANVTDSQ 39
MAQ+Q QGQN NGG A Q GTTSLYVGDL+A VTDSQ
Sbjct: 1 MAQIQHQGQNANGGVAVPGAAAAEAAAAAAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQ 60
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
L++ F Q GQVVSVRVCRD++TRRSLGYGYVN++ Q+A+RAL LNF LNG+ IRVMY
Sbjct: 61 LFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMY 120
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S RDPSLRKSG GNIFIKNLDK+IDHKALH+TFSAFG ILSCKVA D +GQSKGYGFVQ+
Sbjct: 121 SVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQY 180
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDL 219
D +E+AQ AI+KLNGMLLNDKQVYVG F+ K +RD K KFTNVYVKNLSES ++E+L
Sbjct: 181 DTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEEL 240
Query: 220 QKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
K FGE+G TS V+MRDG+GKSK FGFVNFENSDDAARAV+ALNGK FDDKEW+VGKAQ
Sbjct: 241 NKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQ 300
Query: 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
KKSERE ELK +FEQ++KEAADK QG+NLY+KNLD+S+ D+KL++ F+PFG+ITSCKVMR
Sbjct: 301 KKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMR 360
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
DPSG+SRGSGFVAFSTPEEA+RA+ EMNGKM+V+KPLYVALAQRKEDR+ARLQ Q R
Sbjct: 361 DPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMR 420
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 300/394 (76%), Positives = 344/394 (87%), Gaps = 3/394 (0%)
Query: 9 QNVNGGGANA---NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 65
+NVN A A NQ TTSLYVGDL+ +VTDSQLYDLFNQ+GQVVSVR+CRDL++++SL
Sbjct: 6 ENVNNDVAAAPVPNQLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSL 65
Query: 66 GYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDH 125
GYGYVNFSN +AA+A+++LNFTPLN KPIR+MYSHRDPS+RKSGA NIFIKNLD+AIDH
Sbjct: 66 GYGYVNFSNPHDAAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDH 125
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
KAL+DTFS FGNILSCK+A D +G SKGYGFVQF+NEESAQ AI+KLNGMLLNDK VYVG
Sbjct: 126 KALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVG 185
Query: 186 HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
HF RKQ+RD ++ +KF NVYVKNLSES T++DL+ +FGEYGTITSAVVMRD DGKSKCF
Sbjct: 186 HFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCF 245
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG 305
GFVNFEN+D AA AVEALNGKKFDDKEWYVGKA KK ERELELK + EQ+MKE DKF G
Sbjct: 246 GFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYG 305
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
ANLY+KNLDDS+ DEKL +LFS FG++TSCK++RDP GISRGSGFVAFSTPEEA+RAL E
Sbjct: 306 ANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAE 365
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
MNGKMV KPLYVA AQ+KE+R+ARLQ Q R
Sbjct: 366 MNGKMVAGKPLYVAPAQKKEERKARLQAQFSQVR 399
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/386 (74%), Positives = 336/386 (87%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GG NQF +TS+YVGDLE NV+++QLY++F+Q G VVS+RVCRDL TRRSLGY YVN+
Sbjct: 14 GGPAPNQFVSTSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYH 73
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
+AQ+A RALE+LNFTP+NGKPIR+M+SHRDPSLRKSGA NIFIKNLDKAID+KALHDTFS
Sbjct: 74 SAQDATRALELLNFTPVNGKPIRIMFSHRDPSLRKSGAANIFIKNLDKAIDNKALHDTFS 133
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFG ILSCKVATD +GQSKGYGFVQF+ EESAQ AIEK+NGMLLNDKQV+VG F+R+QER
Sbjct: 134 AFGGILSCKVATDSSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFVGPFVRRQER 193
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
D SKF NVYVKNL E+TT+++L+K FG YG I+SAVVMRD +GKSKCFGFVNFE +
Sbjct: 194 DLSGGVSKFNNVYVKNLGENTTDDELKKVFGAYGPISSAVVMRDNEGKSKCFGFVNFELA 253
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
DDAA+AVEALNGKK D+KEWYVG+AQKKSERE EL+ +FEQ K +K+QG NLY+KNL
Sbjct: 254 DDAAKAVEALNGKKQDEKEWYVGRAQKKSEREAELRAKFEQERKSRIEKYQGVNLYLKNL 313
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD++DDEKL++LF+ +G+ITSCKVM+DP G SRGSGFVAFSTPEEA+RA+ EMN KMV S
Sbjct: 314 DDAVDDEKLRELFAEYGTITSCKVMKDPQGQSRGSGFVAFSTPEEATRAVTEMNTKMVGS 373
Query: 374 KPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVALAQRKE+RR RLQ Q R
Sbjct: 374 KPLYVALAQRKEERRVRLQAAFAQMR 399
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/394 (75%), Positives = 343/394 (87%), Gaps = 3/394 (0%)
Query: 9 QNVNGGGANA---NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 65
+NVN A A NQ TTSLYVGDL+ +VTDSQLYDLFNQ+GQVVSVR+CRDL++++SL
Sbjct: 6 ENVNNDVAAAPVPNQLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSL 65
Query: 66 GYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDH 125
GYGYVNFSN +AA+A+++LNFTPLN KPIR+MYSHRDPS+RKSGA NIFIKNLD+AIDH
Sbjct: 66 GYGYVNFSNPHDAAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDH 125
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
KAL+DTFS FGNILSCK+A D +G SKGYGFVQF+NEESAQ AI+KLNGMLLNDK VYVG
Sbjct: 126 KALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVG 185
Query: 186 HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
HF RKQ+RD ++ +KF NVYVKNLSES T++DL+ +FGEYGTITSAVVMRD DGKSKCF
Sbjct: 186 HFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCF 245
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG 305
GFVNFEN+D AA AVEALNGKKFDDKEWYVGKA KK ERELELK + EQ+MKE DKF G
Sbjct: 246 GFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYG 305
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
ANLY+KNLDDS+ DEKL +LFS FG++TSCK++RDP GISRGSGFVAFSTPEEA+RAL E
Sbjct: 306 ANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAE 365
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
MNGKMV KPLYVA AQ+KE+R+ARL Q R
Sbjct: 366 MNGKMVAGKPLYVAPAQKKEERKARLPAQFSQVR 399
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 283/379 (74%), Positives = 331/379 (87%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F +TSLYVGDLE NV+++QLY+LF Q+GQVVS+RVCRDL TRRSLGY YVN+++AQ+A R
Sbjct: 25 FVSTSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATR 84
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE+LNF+ LNG PIR+M+SHRDPS+RKSG NIFIKNLDK ID+KALHDTFSAFG ILS
Sbjct: 85 ALELLNFSVLNGNPIRIMFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFGGILS 144
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D +GQSKGYGFVQF+ EESA AIEK+NGMLLNDKQV+VG F+R+QERD S
Sbjct: 145 CKVAVDGSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGGVS 204
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NVYVKNL E+TTE+DL+ FG YGTI+SAVVMRD DGKSKCFGFVNFE+ D+AA+AV
Sbjct: 205 KFNNVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAV 264
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
EALNGKK D+KEWYVG+AQKKSERE EL+ +FEQ KE +K+QG NLY+KNLDD++DDE
Sbjct: 265 EALNGKKRDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDE 324
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LF+ +G+ITSCKVMRDP G SRGSGFVAFS+PEEA+RA+ EMNGKMV SKPLYVAL
Sbjct: 325 KLRELFADYGTITSCKVMRDPQGQSRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLYVAL 384
Query: 381 AQRKEDRRARLQVCLLQCR 399
AQRKE+RRARLQ Q R
Sbjct: 385 AQRKEERRARLQAAFAQMR 403
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust.
Identities = 284/397 (71%), Positives = 340/397 (85%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
MAQ Q Q G F +TSLYVGDLE+ V+++QLY++F+Q+GQVVS+RVCRDL
Sbjct: 1 MAQAPVQQQAPAASGPAPPNFVSTSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLI 60
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
TRRSLGY YVN++NAQ+A RALE+LNF +NGKPIR+M+SHRDPS+RKSG NIFIKNLD
Sbjct: 61 TRRSLGYAYVNYNNAQDATRALELLNFNAVNGKPIRIMFSHRDPSIRKSGTANIFIKNLD 120
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
K+ID+KALHDTF+AFG ILSCKVATD +GQSKGYGFVQF+ EESAQ AIEK+NGMLLNDK
Sbjct: 121 KSIDNKALHDTFAAFGTILSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDK 180
Query: 181 QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
QV+VG F+R+QERD SKF NVYVKNL++STT+++L+K F YG I+SAVVMRD +G
Sbjct: 181 QVFVGPFVRRQERDQSGVVSKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEG 240
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSKCFGFVNFE++DDAA+AVEALNGKKFD+KEWYVG+AQKKSERE EL+ +FEQ KE
Sbjct: 241 KSKCFGFVNFEHADDAAKAVEALNGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERI 300
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
+K+QG NLY+KNLDD+IDDEKL+++FS +G+I SCKVMRDP G SRGSGFVAFS+P+EA+
Sbjct: 301 EKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSPDEAT 360
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
RA+ EMNGKMV SKPLYVALAQRKE+RR RLQ Q
Sbjct: 361 RAVTEMNGKMVGSKPLYVALAQRKEERRNRLQAAFAQ 397
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 279/379 (73%), Positives = 338/379 (89%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL+ +V D+QL+D+F Q+G VVSVRVCRD++TRRSLGY YVN+S+ +AAR
Sbjct: 37 FPATSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAAR 96
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALEMLNFTP+NGKPIR+MYS+RDPSLRKSG NIFIKNLDK+ID+KAL+DTF FGNILS
Sbjct: 97 ALEMLNFTPINGKPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILS 156
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD +G+SKGYGFVQ++ +E+AQ AI+KLNGML+NDK+VYVG F+RKQERD +
Sbjct: 157 CKVATDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDNSPGQV 216
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NVYVKNLSE+TTE+DL++ FG++GTITSAVVMR+GDG+SKCFGFVNFE+ DDAA+AV
Sbjct: 217 KFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAV 276
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGKKFDDKEWYVG+AQKKSERE+ELK +FE+N++EAADK+Q NLY+KNLDDS+DD+
Sbjct: 277 QELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDD 336
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LF+ +G+ITSCKVMRD +G+SRGSGFVAF + E+ASRAL EMN KMV SKPLYVAL
Sbjct: 337 KLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVAL 396
Query: 381 AQRKEDRRARLQVCLLQCR 399
AQRKEDR+ARLQ Q R
Sbjct: 397 AQRKEDRKARLQAQFSQLR 415
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 293/400 (73%), Positives = 337/400 (84%), Gaps = 2/400 (0%)
Query: 1 MAQV-QAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL 59
MA + Q + GAN + T SLYVGDL+ +V D QLYDLFNQ+ QVVSVR+CRD+
Sbjct: 1 MAHIPQTPTNDAAASGANPS-MTTISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDV 59
Query: 60 STRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL 119
+T++SLGYGYVNFSNA++AA+A+++LNFTPLNGK IR+MYS RDPS RKSGA N+FIKNL
Sbjct: 60 ATQQSLGYGYVNFSNARDAAKAIDVLNFTPLNGKTIRIMYSIRDPSARKSGAANVFIKNL 119
Query: 120 DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
DKAIDHKAL DTFSAFGNILSCK+ATD +GQSKG+GFVQF++EESAQ AI+KLNGML+ND
Sbjct: 120 DKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGMLIND 179
Query: 180 KQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
KQVYVG F RKQ+R++ ++ +KF NVYVKNL E+TTE DL+ FGEYG ITSAVVMRD D
Sbjct: 180 KQVYVGPFQRKQDRESALSGTKFNNVYVKNLFEATTEADLKSIFGEYGAITSAVVMRDVD 239
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
GKSK FGFVNF N +DAA+AVEALNGK FD KEWYVGKAQKKSERELELK + EQ+ KE
Sbjct: 240 GKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKERNEQSTKET 299
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEA 359
DK+ G NLYIKNLDDS+ DE+L++LFS FG+ITSCKVMRDPSGISRGSGFVAFS E A
Sbjct: 300 VDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAFSIAEGA 359
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
S AL EMNGKMV KPLYVALAQRKEDRRARLQ Q R
Sbjct: 360 SWALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQAR 399
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 292/400 (73%), Positives = 337/400 (84%), Gaps = 2/400 (0%)
Query: 1 MAQVQAQGQNVNGGGANANQ-FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL 59
MAQV + ++ + AN T SLYVGDL +V D QLYDLFNQ+ QVVSVR+CRD+
Sbjct: 1 MAQV-LENPTIDAAASGANPSLTTISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDV 59
Query: 60 STRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL 119
+T++SLGYGYVNFSNA +AA+A+++LNFTPLNGK IR+MYS RDPS RKSGA N+FIKNL
Sbjct: 60 ATQQSLGYGYVNFSNAHDAAKAIDVLNFTPLNGKIIRIMYSIRDPSARKSGAANVFIKNL 119
Query: 120 DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
DKAIDHKAL+DTFSAFGNILSCKVATD +GQSKG+GFVQF++EESAQ AI+KLNGML+ND
Sbjct: 120 DKAIDHKALYDTFSAFGNILSCKVATDASGQSKGHGFVQFESEESAQNAIDKLNGMLIND 179
Query: 180 KQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
KQV+VG FLRKQ+R++ ++ +KF NV+VKNL +S TE DL++ FGEYG ITSAVVMRD D
Sbjct: 180 KQVFVGPFLRKQDRESALSGTKFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVD 239
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
GKSK FGFVNF N DDAA+AVEALNGK FD KEWYVGKAQKKSERELELK Q EQ KE
Sbjct: 240 GKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKGQHEQITKET 299
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEA 359
DK+ G NLYIKNLDDS+ DE+L +LFS FG+ITSCKVMRDP+GISRGSGFV+FS E A
Sbjct: 300 VDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSIAEGA 359
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
+RAL EMNGKMV KPLYVALAQRKEDRRARLQ Q R
Sbjct: 360 TRALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQSR 399
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 167/299 (55%), Gaps = 17/299 (5%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + G ++++ +L+ + LYD F+ G ++S +V D S + S G+G+V F + +
Sbjct: 105 SARKSGAANVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDASGQ-SKGHGFVQFESEE 163
Query: 77 EAARALEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
A A++ LN +N K + V R+ +L + N+F+KNL ++ L F
Sbjct: 164 SAQNAIDKLNGMLINDKQVFVGPFLRKQDRESALSGTKFNNVFVKNLLDSMTEADLERIF 223
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+G I S V D++G+SKG+GFV F N + A KA+E LNG + K+ YVG +K E
Sbjct: 224 GEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGKAQKKSE 283
Query: 193 RDTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
R+ E ++K TN+Y+KNL +S +E+L + F E+GTITS VMRD +G
Sbjct: 284 RELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNG 343
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
S+ GFV+F ++ A RA+ +NGK K YV AQ+K +R L+ QF Q+ A
Sbjct: 344 ISRGSGFVSFSIAEGATRALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQSRPAA 402
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust.
Identities = 279/385 (72%), Positives = 337/385 (87%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G QF +TSLYVGDLE NV+++QLY++F+Q+GQVVS+RVCRDL TRRSLGY YVN++N
Sbjct: 15 GPAPTQFVSTSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNN 74
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
AQ+A RALE+LNFT +NGKPIR+M+SHRDPS+RKSG NIFIKNLDK+ID+KALHDTF+A
Sbjct: 75 AQDATRALELLNFTGVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAA 134
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FGNILSCKVATD +GQSKGYGFVQF+ EESAQ AIEK+NGMLLNDKQV+VG F+R+QERD
Sbjct: 135 FGNILSCKVATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDKQVFVGPFVRRQERD 194
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
SKF NVYVKNL++ TT+++L+K FG +G I+SAVVMRD DGKSKCFGFVNFE+ D
Sbjct: 195 QAGGVSKFNNVYVKNLADVTTDDELKKVFGAWGPISSAVVMRDNDGKSKCFGFVNFEHPD 254
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DAA+AVEAL GKKFD+KEWYVG+AQKKSERE EL+ +FEQ KE +K+QG NLY+KNLD
Sbjct: 255 DAAKAVEALQGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLD 314
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D++DDEK+++LF+ +G+ITSCKVMRD G S+GSGFVAFS+P+EA+RA+ EMNGKMV +K
Sbjct: 315 DTVDDEKIRELFAEYGTITSCKVMRDHQGQSKGSGFVAFSSPDEATRAVTEMNGKMVGNK 374
Query: 375 PLYVALAQRKEDRRARLQVCLLQCR 399
PLYVALAQRKE+RR RLQ Q R
Sbjct: 375 PLYVALAQRKEERRMRLQAAFAQMR 399
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 284/380 (74%), Positives = 336/380 (88%), Gaps = 1/380 (0%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL+ +V D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVNFS+ +AAR
Sbjct: 36 FQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAAR 95
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALEMLNFTP+NGKPIR+MYS+RDPS RKSGA NIFIKNLDK+ID+KAL+DTFS FGNILS
Sbjct: 96 ALEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILS 155
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVAT+++G+SKGYGFVQF+ EE+AQ AI KLNGMLLNDK+VYVG F+RKQER+
Sbjct: 156 CKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNP 215
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NVYVKNLSESTTE++L++ FG++G ITS VVMR+GDGKS+CFGFVNFEN DDAARAV
Sbjct: 216 KFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAV 275
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI-DD 319
E LNGKKFDDKEWYV +AQKKSERE+ELK +FE+N+KEAADK QG NLY+KNLDDSI DD
Sbjct: 276 EDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDD 335
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
EKLK++F+ FG+ITSCKVMRD +G+S+GSGFVAF + E+ASRAL+ MNGKM+ SKPLYVA
Sbjct: 336 EKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVA 395
Query: 380 LAQRKEDRRARLQVCLLQCR 399
LAQRKE+RRARLQ Q R
Sbjct: 396 LAQRKEERRARLQAQFSQMR 415
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 281/375 (74%), Positives = 328/375 (87%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDLEA+VTDSQLY+LF+Q GQV+SVRVCRD+S+RRSLGY YVNF+N +AARALE+
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF PLNGKPIRVMYS+RDPS R+SG+ NIFIKNLDKAIDHK LHDTFSAFGNILSCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD GQSKG+GFVQ+D E+AQ AI+ LNGML+NDK VYVG FLRKQER+ ++K+KF N
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNLSESTT+EDL K FG YG ITSAV+M DGKS+CFGF+NF++ DDAARAVE LN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GKK +DKEWYVG+AQKKSERE+ELK +FEQ+MK+AADK+QG NLY+KNLDDSI D++L +
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LFS +G ITSCK+MRD +G+S+GSGFVAFST EEAS+AL EMNGKM+ KPLYVA AQRK
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 399
Query: 385 EDRRARLQVCLLQCR 399
EDR+A LQ Q R
Sbjct: 400 EDRKAMLQAQFSQVR 414
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust.
Identities = 284/380 (74%), Positives = 336/380 (88%), Gaps = 1/380 (0%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL+ +V D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVNFS+ +AAR
Sbjct: 36 FQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAAR 95
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALEMLNFTP+NGKPIR+MYS+RDPS RKSGA NIFIKNLDK+ID+KAL+DTFS FGNILS
Sbjct: 96 ALEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILS 155
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVAT+++G+SKGYGFVQF+ EE+AQ AI KLNGMLLNDK+VYVG F+RKQER+
Sbjct: 156 CKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNP 215
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NVYVKNLSESTTE++L++ FG++G ITS VVMR+GDGKS+CFGFVNFEN DDAARAV
Sbjct: 216 KFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAV 275
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI-DD 319
E LNGKKFDDKEWYV +AQKKSERE+ELK +FE+N+KEAADK QG NLY+KNLDDSI DD
Sbjct: 276 EDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDD 335
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
EKLK++F+ FG+ITSCKVMRD +G+S+GSGFVAF + E+ASRAL+ MNGKM+ SKPLYVA
Sbjct: 336 EKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVA 395
Query: 380 LAQRKEDRRARLQVCLLQCR 399
LAQRKE+RRARLQ Q R
Sbjct: 396 LAQRKEERRARLQAQFSQMR 415
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 283/388 (72%), Positives = 330/388 (85%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
+ GGA TTSLYVGDLEANVTDSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVN
Sbjct: 110 HAGGAAQQPLPTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVN 169
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+SN +AARA+E LNF PLN KPIRVMYS+RDPS R+SG+ NIFIKNLDK ID+K LHDT
Sbjct: 170 YSNPMDAARAMEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDT 229
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFG ILSCKVA D GQSKG+GFVQ++ EESAQ A++ LNGML+NDK VYVG FLRKQ
Sbjct: 230 FSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQ 289
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
ERD +K+KF NV+VKNLSESTT+EDL K F EYGTITSAVVM DGKS+CFGFVNFE
Sbjct: 290 ERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFE 349
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ DDAARAVE LNGKK +DKEWYVG+AQKKSERE++LK +FEQ+MK+AADK+QG NLY+K
Sbjct: 350 SPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLK 409
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDD I D++L++LFS FG ITSCK+MRD +G+S+GSGFV+FST EEAS+AL EMNGKM+
Sbjct: 410 NLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMI 469
Query: 372 VSKPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVA AQRKE+R+A LQ Q R
Sbjct: 470 SGKPLYVAFAQRKEERKAMLQAQFSQMR 497
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust.
Identities = 280/375 (74%), Positives = 327/375 (87%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDLEA+VTDSQLY+LF+Q GQV+SVRVCRD+S+RRSLGY YVNF+N +AARALE+
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF PLNGKPIRVMYS+RDPS R+SG+ NIFIKNLDKAIDHK LHDTFSAFGNILSCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD GQSKG+GFVQ+D E+AQ AI+ LNGML+NDK VYVG FLRKQER+ ++K+KF N
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNLSESTT+EDL K FG YG ITSAV+M DGKS+CFGF+NF++ DDAARAVE LN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GKK +DKEWYVG+AQKKSERE+ELK +FEQ+MK+AADK+QG NLY+KNLDDSI D++L +
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LFS +G ITSCK+MRD +G+S+GSGFVAFST EEAS+AL EMNGKM+ KPLYVA AQRK
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 399
Query: 385 EDRRARLQVCLLQCR 399
EDR+ LQ Q R
Sbjct: 400 EDRKVMLQAQFSQVR 414
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 273/379 (72%), Positives = 331/379 (87%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL+ +V D+QL+D+F Q+G VVSVRVCRD++TR+SLGY YVN++ +AAR
Sbjct: 31 FPATSLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAAR 90
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALEMLNFTP+NG+PIR+MYS+RDPSLRKSG NIFIKNLDK+ID+KAL+DTF FGNILS
Sbjct: 91 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILS 150
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD +G+SKGYGFVQ++ +E+A AIEKLNGML+NDK+VYVG F+RKQERD
Sbjct: 151 CKVATDASGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFIRKQERDNSPGNV 210
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NV+VKNLSE+TTE+DL++ FG++GTITS VVMR+GDG+SKCFGFVNFE+ D+AA AV
Sbjct: 211 KFNNVFVKNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAV 270
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGKKFDDKEWYVG+AQKKSERE+ELK +FE+N++E ADK+Q NLY+KNLDD++DDE
Sbjct: 271 QDLNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQETADKYQNTNLYLKNLDDTVDDE 330
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LF+ FG+ITSCKVMRD +G SRGSGFVAF + E+ASRAL EMN KMV SKPLYVAL
Sbjct: 331 KLRELFAEFGAITSCKVMRDSNGASRGSGFVAFKSAEDASRALAEMNNKMVGSKPLYVAL 390
Query: 381 AQRKEDRRARLQVCLLQCR 399
AQRKEDR+ARLQ Q R
Sbjct: 391 AQRKEDRKARLQAQFSQLR 409
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 283/388 (72%), Positives = 330/388 (85%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
+ GGA TTSLYVGDLEANVTDSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVN
Sbjct: 110 HAGGAAQQPLPTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVN 169
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+SN +AARA+E LNF PLN KPIRVMYS+RDPS R+SG+ NIFIKNLDK ID+K LHDT
Sbjct: 170 YSNPMDAARAMEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDT 229
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFG ILSCKVA D GQSKG+GFVQ++ EESAQ A++ LNGML+NDK VYVG FLRKQ
Sbjct: 230 FSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQ 289
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
ERD +K+KF NV+VKNLSESTT+EDL K F EYGTITSAVVM DGKS+CFGFVNFE
Sbjct: 290 ERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFE 349
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ DDAARAVE LNGKK +DKEWYVG+AQKKSERE++LK +FEQ+MK+AADK+QG NLY+K
Sbjct: 350 SPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLK 409
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDD I D++L++LFS FG ITSCK+MRD +G+S+GSGFV+FST EEAS+AL EMNGKM+
Sbjct: 410 NLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMI 469
Query: 372 VSKPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVA AQRKE+R+A LQ Q R
Sbjct: 470 SGKPLYVAFAQRKEERKAMLQAQFSQMR 497
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 272/379 (71%), Positives = 330/379 (87%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL+ +V D+QL+D+F Q+G VVSVRVCRD+++R+SLGY YVN++ +AAR
Sbjct: 122 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 181
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALEMLNFTP+NG+PIR+MYS+RDPSLRKSG NIFIKNLDK+ID+KALHDTF FGNILS
Sbjct: 182 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILS 241
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SKGYGFVQ++ +E+A AIEKLNGML+NDK+VYVG F+RKQERD
Sbjct: 242 CKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSV 301
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NVYVKNL+E+TTE+DL++ FG++GTITS VVMRDGDG+SKCFGFVNFE+ D+AA AV
Sbjct: 302 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 361
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGKKF DKEWYVG+AQKKSERE+ELK +FE+N++EAADK+Q NLY+KNLDD++DDE
Sbjct: 362 QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDE 421
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LF+ FG+ITSCKVMRD +G SRGSGFVAF + ++ASRAL EMN KMV +KPLYVAL
Sbjct: 422 KLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVAL 481
Query: 381 AQRKEDRRARLQVCLLQCR 399
AQRKEDR+ARLQ Q R
Sbjct: 482 AQRKEDRKARLQAQFSQMR 500
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust.
Identities = 279/382 (73%), Positives = 325/382 (85%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A TTSLYVGDLEA+VTDSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVNFSN +
Sbjct: 31 AQPLPTTSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMD 90
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
AARALEMLNF PLN KPIRVMYS+RDPS R+SG+ NIFIKNLDK ID+K LHDTFSAFG
Sbjct: 91 AARALEMLNFVPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGA 150
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVATD GQSKG+GFVQ++ EE AQ A++ LNGML+NDK VYVG FLRKQERD
Sbjct: 151 ILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSF 210
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+K++F NV+VKNLSESTT+EDL K F EYG ITSAVVM DGKS+CFGF+NFE+ DDA
Sbjct: 211 DKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFGFINFESPDDAV 270
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RAVE LNGKK +DKEWY G+AQKKSERE++LK +FEQ+MK+AADK+QG NLY+KNLDD I
Sbjct: 271 RAVEELNGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGI 330
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++L++LFS FG ITSCKVMRD +G+S+GSGFVAFST EEAS+A+ EMNGKM+ KPLY
Sbjct: 331 SDDQLRELFSTFGKITSCKVMRDQNGVSKGSGFVAFSTREEASQAITEMNGKMLSGKPLY 390
Query: 378 VALAQRKEDRRARLQVCLLQCR 399
VA AQRKE+R+A LQ Q R
Sbjct: 391 VAFAQRKEERKAMLQAQFSQMR 412
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 270/379 (71%), Positives = 329/379 (86%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL+ +V D+QL+D+F Q+G VVSVRVCRD+++R+SLGY YVN++ +AAR
Sbjct: 29 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 88
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALEMLNFTP+NG+PIR+MYS+RDPSLRKSG NIFIKNLDK+ID+KAL+DTF FGNILS
Sbjct: 89 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILS 148
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SKGYGFVQ++ +E+A AIEKLNGML+NDK+VYVG F+RKQERD
Sbjct: 149 CKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGNV 208
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NVYVKNL+E+TTE+DL++ FG++G ITS VVMRDGDG+SKCFGFVNFE+ D+AA AV
Sbjct: 209 KFNNVYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 268
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGKKF DKEWYVG+AQKKSERE+ELK +FE+N++EAADK+Q NLY+KNLDD++DDE
Sbjct: 269 QDLNGKKFSDKEWYVGRAQKKSEREIELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDE 328
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LF+ FG+ITSCKVMRD +G SRGSGFVAF + ++ASRAL EMN KMV +KPLYVAL
Sbjct: 329 KLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVAL 388
Query: 381 AQRKEDRRARLQVCLLQCR 399
AQRKEDR+ARLQ Q R
Sbjct: 389 AQRKEDRKARLQAQFSQMR 407
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 277/382 (72%), Positives = 327/382 (85%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A TTSLYVGDLE +V+DSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVNF+N +
Sbjct: 34 AQPLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLD 93
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
AARALE+LNF PLN KPIRVMYS+RDPS R+SG+ NIFIKNLDK ID+K+LH+TFS+FG
Sbjct: 94 AARALEVLNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKMIDNKSLHETFSSFGT 153
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVA D GQSKG+GFVQ++ EE+AQ AI+ LNGML+NDK V+VG FLRKQERD
Sbjct: 154 ILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSF 213
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+K+KF NV+VKNLSESTT+EDL K FGEYG ITSAVVM DGKS+CFGF+NFEN D A+
Sbjct: 214 DKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFGFINFENPDAAS 273
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RAV+ LNGKK +DKEWYVG+AQKKSERE+ELK +FEQ +K+AADK+QG NLY+KNLDDSI
Sbjct: 274 RAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQILKDAADKYQGLNLYLKNLDDSI 333
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++L++LFS FG ITSCKVMRD +G+S+GSGFVAFST EEAS+AL EMNGKM+ KPLY
Sbjct: 334 GDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLY 393
Query: 378 VALAQRKEDRRARLQVCLLQCR 399
VA AQRKEDR+A LQ Q R
Sbjct: 394 VAFAQRKEDRKAMLQAQFSQMR 415
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 275/322 (85%), Positives = 300/322 (93%)
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
AARAL++LNFTP NGKPIRVMYSHRDPS+RKSGAGNIFIKNLDKAIDHKALHDTFSAFG+
Sbjct: 5 AARALDVLNFTPXNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGS 64
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVA D +GQSKGYGFVQFDNEESA KAIEKLNGMLLNDKQVYVG FLRKQERD +
Sbjct: 65 ILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVV 124
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+KSKF NV+VKNLSE+TTEEDL K+F E+GT+TS VVMRD DGKS+CFGFVNFEN+DDAA
Sbjct: 125 DKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAA 184
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RAV+ LNGK DDKEWYVGKAQKKSERE+ELKH+FEQ MKEAADK+QGANLYIKNLDDSI
Sbjct: 185 RAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSI 244
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D+KLK+LF+PFG+ITSCKVMRDP+GISRGSGFVAFSTP+EASRAL+EMNGKMVVSKPLY
Sbjct: 245 GDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLY 304
Query: 378 VALAQRKEDRRARLQVCLLQCR 399
VALAQRKEDRRARLQ Q R
Sbjct: 305 VALAQRKEDRRARLQAQFSQIR 326
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 167/289 (57%), Gaps = 17/289 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + L+D F+ G ++S +V D S+ +S GYG+V F N + A +A
Sbjct: 37 GAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALD-SSGQSKGYGFVQFDNEESALKA 95
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
+E LN LN K + V RD + KS N+F+KNL + + L+ FS FG
Sbjct: 96 IEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGT 155
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
+ S V D +G+S+ +GFV F+N + A +A++ LNG L++DK+ YVG +K ER+ E+
Sbjct: 156 LTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVEL 215
Query: 198 ------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+K + N+Y+KNL +S ++ L++ F +GTITS VMRD +G S+
Sbjct: 216 KHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGS 275
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
GFV F D+A+RA+ +NGK K YV AQ+K +R L+ QF Q
Sbjct: 276 GFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQ 324
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+++ +LY+ +L+ ++ D +L +LF G + S +V RD S G G+V FS E
Sbjct: 227 ADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRD-PNGISRGSGFVAFSTPDE 285
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A+RAL +N + KP+ V + R
Sbjct: 286 ASRALVEMNGKMVVSKPLYVALAQR 310
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 268/379 (70%), Positives = 329/379 (86%), Gaps = 3/379 (0%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F +TSLYVGDL+ NV+++QLYDLFNQ+GQV+S+RVCRDL TRRSLGY YVN++N Q+A R
Sbjct: 1 FVSTSLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATR 60
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE+LNFTP+NGK +R+M+SHRDPS+RKSG NIFIKNLD+AID+KALHDTF +FGNILS
Sbjct: 61 ALELLNFTPVNGKAVRIMFSHRDPSIRKSGTANIFIKNLDRAIDNKALHDTFVSFGNILS 120
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD NGQSKGYGFVQF+ EESAQ AI+K+NGML+ +KQV+VG F+R+QER+
Sbjct: 121 CKVATDSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEKQVFVGPFVRRQERE---QNG 177
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NV+VKNL ESTT+++L++ FG +G ITSAVVMRD DGKSKCFGFVNFEN D+AA+AV
Sbjct: 178 KFNNVFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKCFGFVNFENPDEAAKAV 237
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LNGKK +DKEWYVG+AQKKSERE EL+ ++EQ KE D++QGANLY+KNLDD +DDE
Sbjct: 238 VGLNGKKIEDKEWYVGRAQKKSEREAELRAKYEQERKERIDRYQGANLYLKNLDDDVDDE 297
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+++F+ FGSITSCKVMRD G S+GSGFVA+S PEEA+RA +EMNGKM+ SKP+YVA+
Sbjct: 298 RLREIFADFGSITSCKVMRDAQGQSKGSGFVAYSAPEEANRATIEMNGKMIGSKPIYVAM 357
Query: 381 AQRKEDRRARLQVCLLQCR 399
AQRKE+RRA+LQ Q R
Sbjct: 358 AQRKEERRAKLQAQFAQMR 376
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 276/375 (73%), Positives = 322/375 (85%), Gaps = 2/375 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDLEA+VTDSQLY+LF+Q GQV+SVRVCRD+S+RRSLGY YVNF+N +AARALE+
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF PLNGKPIRVMYS+RDPS R+SG+ NIFIKNLDKAIDHK LHDTFSAFGNILSCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD GQSKG+GFVQ+D E+AQ AI+ LNGML+NDK VYVG FLRKQER+ ++K+KF N
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNLSESTT+EDL K FG YG ITSAV+M DGKS+CFGF+NF++ DDAARAVE LN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GKK +DKEWYVG+AQKKSERE+ELK +FEQ+MK+AADK+QG NLY+KNLDDSI D++L +
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LFS +G ITSCK+MRD +G+S+GSGFVAFST L EMNGKM+ KPLYVA AQRK
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFST--LPFIQLTEMNGKMISGKPLYVAFAQRK 397
Query: 385 EDRRARLQVCLLQCR 399
EDR+A LQ Q R
Sbjct: 398 EDRKAMLQAQFSQVR 412
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 275/377 (72%), Positives = 325/377 (86%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
TTSLYVGDLE +V+DSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVNFSN +AARAL
Sbjct: 45 TTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARAL 104
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E+LNF LN KPIRVMYS+RDPS R+SG+ NIFIKNLDK ID+K LH+TFS+FG ILSCK
Sbjct: 105 EVLNFAVLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCK 164
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
VA D GQSKG+GFVQ++ EE+AQ AI+ LNGML+NDK V+VG FLRKQERD +K+KF
Sbjct: 165 VAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKF 224
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
NV+VKNLSESTT+EDL K FGEYG+ITSAVVM DGKS+CFGF+NFEN D A+RAV+
Sbjct: 225 NNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAASRAVQE 284
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LNGKK +DKEWYVG+AQKKSERE+ELK +FEQ++K+AADK+QG NLY+KNLDDSI D++L
Sbjct: 285 LNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQL 344
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++LFS FG ITS KVMRD +G+S+GSGFVAFST EEAS+AL EMNGKM+ KPLYVA AQ
Sbjct: 345 RELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQ 404
Query: 383 RKEDRRARLQVCLLQCR 399
RKEDR+A LQ Q R
Sbjct: 405 RKEDRKAMLQAQFSQMR 421
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust.
Identities = 265/379 (69%), Positives = 336/379 (88%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL +V D+QL+D+F+Q+G VVSVRVCRD+++R+SLGY YVN++N +AAR
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE+LNFTP+NGKPIR+MYS+RDPS RKSG GNIFIKNLDK+ID+KAL+DTF AFGNILS
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILS 151
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CK+ATD +G+S+GYGFVQF+ +ESAQ AI+KLNGML+NDK+V+VG F+RKQ+R+ +
Sbjct: 152 CKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNI 211
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF+NVYVKNLS++ T+++L++ FG+YGTITSAVVMRD DGKS+CFGFVNFEN+D AA+AV
Sbjct: 212 KFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAV 271
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F+DKE YVG+AQKKSERE+ELK +FE+N++E A+KFQ NLY+KNL+++IDDE
Sbjct: 272 QELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDE 331
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LF+ +G+ITSCKVMRD +G+SRGSGFVAF + E+A+RAL EMNGKMV SKPLYVAL
Sbjct: 332 KLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVAL 391
Query: 381 AQRKEDRRARLQVCLLQCR 399
AQRKEDR+A+LQ Q R
Sbjct: 392 AQRKEDRKAKLQAQFSQMR 410
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 265/379 (69%), Positives = 336/379 (88%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL +V D+QL+D+F+Q+G VVSVRVCRD+++R+SLGY YVN++N +AAR
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE+LNFTP+NGKPIR+MYS+RDPS RKSG GNIFIKNLDK+ID+KAL+DTF AFGNILS
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILS 151
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CK+ATD +G+S+GYGFVQF+ +ESAQ AI+KLNGML+NDK+V+VG F+RKQ+R+ +
Sbjct: 152 CKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNI 211
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF+NVYVKNLS++ T+++L++ FG+YGTITSAVVMRD DGKS+CFGFVNFEN+D AA+AV
Sbjct: 212 KFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAV 271
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F+DKE YVG+AQKKSERE+ELK +FE+N++E A+KFQ NLY+KNL+++IDDE
Sbjct: 272 QELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDE 331
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LF+ +G+ITSCKVMRD +G+SRGSGFVAF + E+A+RAL EMNGKMV SKPLYVAL
Sbjct: 332 KLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVAL 391
Query: 381 AQRKEDRRARLQVCLLQCR 399
AQRKEDR+A+LQ Q R
Sbjct: 392 AQRKEDRKAKLQAQFSQMR 410
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 274/380 (72%), Positives = 324/380 (85%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A TTSLYVGDLE V+DSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVN+SN +
Sbjct: 28 AQPLPTTSLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLD 87
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
AARALE+LNF LN KPIRVMYS+RDPS R+SG+ NIFIKNLDK ID+K LH+TFS+FG
Sbjct: 88 AARALEVLNFAALNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGT 147
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVA D GQSKG+GFVQ+D EE+AQ AI+ LNGML+NDK V+VG F+RKQERD
Sbjct: 148 ILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFVGPFVRKQERDHSF 207
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+K+KF NV+VKNLSESTT+EDL K FGEYG ITSAVVM DGKS+CFGF+NFEN D A+
Sbjct: 208 DKTKFNNVFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRCFGFINFENPDAAS 267
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
AV+ LNGKK +DKEWYVG+AQKKSERE+ELK +FEQ++K+AADK+QG NLY+KNLDDSI
Sbjct: 268 HAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSI 327
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++L +LFS FG ITS KVMRD +G+S+GSGFVAFST EEAS+AL EMNGKM+ KPLY
Sbjct: 328 GDDQLCELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLY 387
Query: 378 VALAQRKEDRRARLQVCLLQ 397
VA AQRKEDR+A LQV +L+
Sbjct: 388 VAFAQRKEDRKAMLQVTVLK 407
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 273/368 (74%), Positives = 318/368 (86%), Gaps = 1/368 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDLEA+VTDSQLY+ F GQV+SVRVCRD+ RS G YVNF+N +AARALE+
Sbjct: 40 SLYVGDLEASVTDSQLYE-FQPGGQVMSVRVCRDIRLGRSFGKPYVNFNNPVDAARALEL 98
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF PLNGKPIRVMYS+RDPS R+SG+ NIFIKNLDKAIDHK LHDTFSAFGNILSCKVA
Sbjct: 99 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 158
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD GQSKG+GFVQ+D E+AQ AI+ LNGML+NDK VYVG FLRKQER+ ++K+KF N
Sbjct: 159 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 218
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNLSESTT+EDL K FG YG ITSAV+M DGKS+CFGF+NF++ DDAARAVE LN
Sbjct: 219 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 278
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GKK +DKEWYVG+AQKKSERE+ELK +FEQ+MK+AADK+QG NLY+KNLDDSI D++L +
Sbjct: 279 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 338
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LFS +G ITSCK+MRD +G+S+GSGFVAFST EEAS+AL EMNGKM+ KPLYVA AQRK
Sbjct: 339 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 398
Query: 385 EDRRARLQ 392
EDR+A LQ
Sbjct: 399 EDRKAMLQ 406
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 163/287 (56%), Gaps = 17/287 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L+ + L+D F+ G ++S +V D +S G+G+V + + A A
Sbjct: 124 GSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATD-EMGQSKGFGFVQYDKGEAAQSA 182
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
++ LN +N KP+ V R+ S+ K+ N+F+KNL ++ + L F A+GN
Sbjct: 183 IKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGN 242
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
I S + ++G+S+ +GF+ F + + A +A+E+LNG +NDK+ YVG +K ER+ E+
Sbjct: 243 ITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIEL 302
Query: 198 ------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+K + N+Y+KNL +S ++ L + F YG ITS +MRD +G SK
Sbjct: 303 KRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGS 362
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
GFV F ++A++A+ +NGK K YV AQ+K +R+ L+ F
Sbjct: 363 GFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQPGF 409
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 270/376 (71%), Positives = 326/376 (86%), Gaps = 1/376 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ +V D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVNFS+ +AARALEM
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEM 102
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNFTP+NGKPIR+MYS+RDPS RKSGA NIFIKNLDK+ID+KAL+DTFSAFGNILSCKVA
Sbjct: 103 LNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVA 162
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
T+++G+SKGYGFVQ++ +ESAQ AI +LNGMLLNDK+VYVG F+RKQER+ KF N
Sbjct: 163 TEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNN 222
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VYVKNLSESTTE++L++ FG +G ITS +V+R DGKS+CFGFVNFEN DDA AVE LN
Sbjct: 223 VYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLN 282
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI-DDEKLK 323
GKKFDDKE YVG+AQKKSERE++LK FE++ KE AD+ QG NLY+KNLD S+ DDEKLK
Sbjct: 283 GKKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLK 342
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+LF+ FG+ITSCKVMRD +G+++GSGFVAF + E+A+RAL+ MNGKMV SKPLYVALAQR
Sbjct: 343 ELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQR 402
Query: 384 KEDRRARLQVCLLQCR 399
KE+RRARLQ Q R
Sbjct: 403 KEERRARLQAQFSQMR 418
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 271/375 (72%), Positives = 327/375 (87%), Gaps = 1/375 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVGDL+ +V D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVNFS+ +AARA+E
Sbjct: 42 TSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAME 101
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
MLNFTP+NGKPIR+MYS+RDPS RKSGA NIFIKNLDK+ID+KAL DTFSAFG ILSCKV
Sbjct: 102 MLNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALFDTFSAFGTILSCKV 161
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
AT+++G+SKGYGFVQ++ +ESAQ AI +LNGMLLNDK+VYVG F+RKQER+ KF
Sbjct: 162 ATEISGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFN 221
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNLSESTTE++L++ FG++G ITS +V+R DGKS+CFGFVNFEN DDAARAVE L
Sbjct: 222 NVYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRCFGFVNFENPDDAARAVEDL 281
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI-DDEKL 322
NGKK DDKE YVG+AQKKSERE++LK +FE++ KE ADK QG NLY+KNLD S+ DDEKL
Sbjct: 282 NGKKLDDKELYVGRAQKKSEREMQLKEKFEKSNKETADKNQGTNLYLKNLDGSVDDDEKL 341
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K+LF+ FG+ITSCKVMRD +G+++GSGFVAF + E+ASRAL+ MNGKMV SKPLYVALAQ
Sbjct: 342 KELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDASRALVAMNGKMVGSKPLYVALAQ 401
Query: 383 RKEDRRARLQVCLLQ 397
RKE+RRARLQ Q
Sbjct: 402 RKEERRARLQAQFSQ 416
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 269/375 (71%), Positives = 325/375 (86%), Gaps = 1/375 (0%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVGDL+ +V D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVNFS+ +AARALEML
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
NFTP+NGKPIR+MYS+RDPS RKSGA NIFIKNLDK+ID+KAL+DTFSAFGNILSCKVAT
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVAT 163
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNV 205
+++G+SKGYGFVQ++ +ESAQ AI +LNGMLLNDK+VYVG F+RKQER+ KF NV
Sbjct: 164 EMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNV 223
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNG 265
YVKNLSESTTE++L++ FG +G ITS +V+R DGKS+CFGFVNFEN DDA AVE LNG
Sbjct: 224 YVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNG 283
Query: 266 KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI-DDEKLKQ 324
KKFDDKE YVG+AQKKSERE++LK FE++ KE AD+ QG NLY+KNLD S+ DDEKLK+
Sbjct: 284 KKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLKE 343
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LF+ FG+ITSCKVMRD +G+++GSGFVAF + E+A+RAL+ MNGKMV SKPLYVALAQRK
Sbjct: 344 LFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQRK 403
Query: 385 EDRRARLQVCLLQCR 399
E+RRARLQ Q R
Sbjct: 404 EERRARLQAQFSQMR 418
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 262/401 (65%), Positives = 332/401 (82%), Gaps = 13/401 (3%)
Query: 1 MAQVQAQGQNVNGGGANA-------------NQFGTTSLYVGDLEANVTDSQLYDLFNQM 47
MAQ+Q Q + G NQF +TSLYVGDL+ NVT+ QLYD+FNQ+
Sbjct: 1 MAQIQVQPSPGSAGAVPVPVPVSVPVSPAAPNQFFSTSLYVGDLDPNVTEGQLYDVFNQV 60
Query: 48 GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLR 107
V+S+RVCRDL ++RSLGY YVN++ Q+A+RALEMLNF+ +NGKPIR+M+SHRDPS+R
Sbjct: 61 APVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEMLNFSLVNGKPIRIMFSHRDPSIR 120
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQK 167
KSG NIFIKNLDK+ID+KAL+DTF+ FGNILSCKVA D +GQS+GYGFVQF+ E++AQ
Sbjct: 121 KSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFVQFEQEDAAQS 180
Query: 168 AIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG 227
AI+++NGMLL +KQV+VG F+R+QERD +KF NVYVKNL ++TT++DL++ FGE+G
Sbjct: 181 AIKQVNGMLLIEKQVFVGPFVRRQERDLTGGIAKFNNVYVKNLGDATTDDDLKRVFGEFG 240
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I+SAVVMRD +GKSKCFGFVNFEN+DDAA AVE LNGKK DDKEWYVG+AQKKSERE E
Sbjct: 241 PISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGRAQKKSEREAE 300
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347
L+ +++Q KE +DK+QG NLY+KNLDD+IDD+KL++LF FG+I SCKVMRDP G S+G
Sbjct: 301 LRARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKVMRDPQGHSKG 360
Query: 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
SGFVAFST EEA+RA+ EMNG+MV +KP+YVALAQ++++RR
Sbjct: 361 SGFVAFSTTEEANRAMTEMNGRMVANKPIYVALAQKRDERR 401
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 157/281 (55%), Gaps = 17/281 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +LD + L+D F+ +LS +V DL + +S GY +V ++ + A +A+E
Sbjct: 38 SLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEM 97
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+N K + + RD I KS N+++KNL +S + L +F ++G I S
Sbjct: 98 LNFSLVNGKPIRIMF----SHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILS 153
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G+S+ +GFV FE D A A++ +NG +K+ +VG ++ ER+L
Sbjct: 154 CKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDL----- 208
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
KF N+Y+KNL D+ D+ LK++F FG I+S VMRDP G S+ GFV
Sbjct: 209 -----TGGIAKFN--NVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFV 261
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F ++A+ A+ E+NGK + K YV AQ+K +R A L+
Sbjct: 262 NFENADDAALAVEELNGKKMDDKEWYVGRAQKKSEREAELR 302
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust.
Identities = 262/401 (65%), Positives = 332/401 (82%), Gaps = 13/401 (3%)
Query: 1 MAQVQAQGQNVNGGGANA-------------NQFGTTSLYVGDLEANVTDSQLYDLFNQM 47
MAQ+Q Q + G NQF +TSLYVGDL+ NVT+ QLYD+FNQ+
Sbjct: 1 MAQIQVQPSPGSAGAVPVPVPVSVPVSPAAPNQFFSTSLYVGDLDPNVTEGQLYDVFNQV 60
Query: 48 GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLR 107
V+S+RVCRDL ++RSLGY YVN++ Q+A+RALEMLNF+ +NGKPIR+M+SHRDPS+R
Sbjct: 61 APVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEMLNFSLVNGKPIRIMFSHRDPSIR 120
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQK 167
KSG NIFIKNLDK+ID+KAL+DTF+ FGNILSCKVA D +GQS+GYGFVQF+ E++AQ
Sbjct: 121 KSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFVQFEQEDAAQS 180
Query: 168 AIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG 227
AI+++NGMLL +KQV+VG F+R+QERD +KF NVYVKNL ++TT++DL++ FGE+G
Sbjct: 181 AIKQVNGMLLIEKQVFVGPFVRRQERDLTGGVTKFNNVYVKNLGDATTDDDLKRVFGEFG 240
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I+SAVVMRD +GKSKCFGFVNFEN+DDAA AVE LNGKK DDKEWYVG+AQKKSERE E
Sbjct: 241 PISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGRAQKKSEREAE 300
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347
L+ +++Q KE +DK+QG NLY+KNLDD+IDD+KL++LF FG+I SCKVMRDP G S+G
Sbjct: 301 LRARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKVMRDPQGHSKG 360
Query: 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
SGFVAFST EEA+RA+ EMNG+MV +KP+YVALAQ++++RR
Sbjct: 361 SGFVAFSTTEEANRAMTEMNGRMVANKPIYVALAQKRDERR 401
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 157/281 (55%), Gaps = 17/281 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +LD + L+D F+ +LS +V DL + +S GY +V ++ + A +A+E
Sbjct: 38 SLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEM 97
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+N K + + RD I KS N+++KNL +S + L +F ++G I S
Sbjct: 98 LNFSLVNGKPIRIMF----SHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILS 153
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G+S+ +GFV FE D A A++ +NG +K+ +VG ++ ER+L
Sbjct: 154 CKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDL----- 208
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
KF N+Y+KNL D+ D+ LK++F FG I+S VMRDP G S+ GFV
Sbjct: 209 -----TGGVTKFN--NVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFV 261
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F ++A+ A+ E+NGK + K YV AQ+K +R A L+
Sbjct: 262 NFENADDAALAVEELNGKKMDDKEWYVGRAQKKSEREAELR 302
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 271/401 (67%), Positives = 330/401 (82%), Gaps = 3/401 (0%)
Query: 1 MAQV-QAQ-GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD 58
MAQV QAQ + + ++ + SLYVGDL+ +V++S+LY++FNQ+GQVVS+RVCRD
Sbjct: 1 MAQVMQAQQAPTIATPISGSSPYVAPSLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRD 60
Query: 59 LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
L T++SLGY YVN+ Q+A++ALE+LNFT + GKPIR+MYSHRDPS+RKSGA NIFIKN
Sbjct: 61 LMTKKSLGYAYVNYGTHQDASQALELLNFTLVKGKPIRIMYSHRDPSIRKSGAANIFIKN 120
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
L+K+ID+KALHDTFSAFG ILSC+V D G SKGYGFVQF+ EESAQ AIEK+NGML+N
Sbjct: 121 LEKSIDNKALHDTFSAFGTILSCRVVMDDAGNSKGYGFVQFEKEESAQIAIEKVNGMLIN 180
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
D+QV V F+RKQERD +K+ F NVYVKNL+E+TT+EDL+K F +G I+SAVVMRD
Sbjct: 181 DRQVSVAPFIRKQERDMASSKN-FNNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDA 239
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
DGKSKCFGFVNFEN DDAA AVE LNGK ++KEWYVG+AQKKSERE ELK +FEQ KE
Sbjct: 240 DGKSKCFGFVNFENVDDAANAVENLNGKLINEKEWYVGRAQKKSEREAELKAKFEQVRKE 299
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358
+KFQG NLY+KN+DDSIDDEKL++LF+ FG++TSCKVM+ P G S GSGFV FS PEE
Sbjct: 300 KEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEE 359
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
A +A+ +MNGKMV SKPLYVALAQRKE+RRARLQ Q +
Sbjct: 360 AMQAVNDMNGKMVGSKPLYVALAQRKEERRARLQAQFAQMQ 400
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 264/400 (66%), Positives = 317/400 (79%), Gaps = 1/400 (0%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
++ V Q G A F SLYVGDL+ + + QLYDLF Q+ V+S+RVCRD +
Sbjct: 16 LSPVAVQQSTAMTGHTAAAGFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQA 75
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
R SLGY YVNF++ Q+A ALE LNFTPLNGKPIR+M+SHRDPS+RKSG N+FIKNLD
Sbjct: 76 RRASLGYAYVNFASPQDATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLD 135
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
+ID+KAL DTF+AFG +LSCK+A D NGQSKGYGFVQF+ EE+AQ AI++LNGML+NDK
Sbjct: 136 PSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDK 195
Query: 181 QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
QVYVG F+R QER+ KFTNVYVKNLSE+TT++DL+ FG+YG+ITSAVVMRD G
Sbjct: 196 QVYVGLFVRHQERNXGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASG 255
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
SKCFGFVNF++SD AA AVE LNG F DDK WYVGKAQ+KSERE EL+ +FEQ K
Sbjct: 256 MSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNK 315
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEA 359
+KF+G NLY+KNLDDS++DEKL +LFS FG+ITSCKVM DP G+S+GSGFVAF TPEEA
Sbjct: 316 FEKFKGXNLYLKNLDDSVNDEKLXELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEA 375
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
+RAL MNGKM+ KPLYVA+AQRKE+R+ARLQ Q R
Sbjct: 376 TRALNVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 415
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 265/381 (69%), Positives = 310/381 (81%), Gaps = 1/381 (0%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
QF SLYVGDLE NV + QLYDLF+Q+ QVVSVRVCRD + R SLGYGYVNFSN Q+AA
Sbjct: 41 QFANLSLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAA 100
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
A++ LNFTPLNGKPIR+M+SHRDPS+RKSG GN+FIKNLD +D+K LH+TF+AFG +L
Sbjct: 101 NAMKALNFTPLNGKPIRIMFSHRDPSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGTVL 160
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
SCKVA D NGQSKGYGFVQF+NEESA++AI L+GM LNDKQVYVG F+R+QER
Sbjct: 161 SCKVAVDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYVGFFVRQQERTRTNGS 220
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
KFTNVYVKNLSE+ T EDL+K FG YGTITSA+VM+D GKS+ FGFVNF++ D AA A
Sbjct: 221 PKFTNVYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAA 280
Query: 260 VEALNGKK-FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
VE LNG DDK WYVG+AQ+KSERE ELK +FEQ ++ + ANLY+KNLDD+I+
Sbjct: 281 VEKLNGTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDDNIN 340
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D KLK+LFS FGSITSCKVM D G+S+GSGFVAFSTPEEASRAL EMNGKM+ KPLYV
Sbjct: 341 DVKLKELFSEFGSITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPLYV 400
Query: 379 ALAQRKEDRRARLQVCLLQCR 399
A+AQRKE+R+ARLQ R
Sbjct: 401 AIAQRKEERKARLQAHFALVR 421
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 263/387 (67%), Positives = 314/387 (81%), Gaps = 1/387 (0%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G A F SLYVGDL+ + + QLYDLF Q+ V+S+RVCRD + R SLGY YVNF+
Sbjct: 3 GHTAAAGFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFA 62
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
+ Q+A ALE LNFTPLNGKPIR+M+SHRDPS+RKSG N+FIKNLD +ID+KAL DTF+
Sbjct: 63 SPQDATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFA 122
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFG +LSCK+A D NGQSKGYGFVQF+ EE+AQ AI++LNGML+NDKQVYVG F+R QER
Sbjct: 123 AFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQER 182
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ KFTNVYVKNLSE+TT++DL+ FG+YG+ITSAVVMRD G SKCFGFVNF++S
Sbjct: 183 NRGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSS 242
Query: 254 DDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
D AA AVE LNG F DDK WYVGKAQ+KSERE EL+ +FEQ K +KF+G NLY+KN
Sbjct: 243 DSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKN 302
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
LDDS++DEKLK+LFS FG+ITSCKVM DP G+S+GSGFVAF TPEEA+RAL MNGKM+
Sbjct: 303 LDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIG 362
Query: 373 SKPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVA+AQRKE+R+ARLQ Q R
Sbjct: 363 RKPLYVAVAQRKEERKARLQAQFAQIR 389
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 267/387 (68%), Positives = 322/387 (83%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GGG N SLYVGDL+ NVTDSQLYD F ++ QVVSVRVCRD +T SLGYGYVN+
Sbjct: 30 GGGDGVNHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNY 89
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
SN ++A +A++ LN++ LNGK IR+ YS RD S R+SG GN+F+KNLDK++D+K LH+TF
Sbjct: 90 SNTEDAEKAMQKLNYSTLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHETF 149
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S G I+SCKVA D GQS+GYGFVQFD E+SA+ AIEKLNG +LNDKQ++VG FLRK+E
Sbjct: 150 SGCGTIVSCKVAADHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEE 209
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
R++ +K KFTNVYVKNLSE TT+++L+ +FG+YG+I+SAVVMRDGDGKS+CFGFVNFEN
Sbjct: 210 RESAADKMKFTNVYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFEN 269
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+DAARAVEALNGKKFDDKEWYVGKAQKKSERELEL ++EQ +A +KF G NLY+KN
Sbjct: 270 PEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDAGNKFDGLNLYVKN 329
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
LDD++ DEKL++LF+ FG+ITSCKVMRDPSG S+GSGFVAFS EASR L EMNGKMV
Sbjct: 330 LDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVG 389
Query: 373 SKPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVALAQRKE+RRA+LQ Q R
Sbjct: 390 GKPLYVALAQRKEERRAKLQAQFSQMR 416
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 262/386 (67%), Positives = 313/386 (81%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G A A QF +SLYVGDLE NV + QL+DLF+Q+ QVVS+RVCRD + R SLGY YVNFS
Sbjct: 13 GTAEAGQFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFS 72
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N Q+AA A+E+LNFTPLNGK IR+M SHRDPS+RKSG N+FIKNLD +ID+KAL +TF+
Sbjct: 73 NPQDAANAMELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFA 132
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+FG +LSCKVA D NGQSKGYGFVQF+NEE+AQ AI +LNGML+NDK+V+VG F+R QER
Sbjct: 133 SFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQER 192
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
KFTNVYVKNLSE+T++EDL+K F YG+ITSA+VM+D GKSK FGFVNF++
Sbjct: 193 IEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSP 252
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
D AA AVE LNG F+DK WYVG+AQ+K ERE ELK +FEQ +K + ANLY+KNL
Sbjct: 253 DSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNL 312
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDEKLK+LFS FGSITSCKVM D G+S+GSGFVAFSTPEEASRAL MNGKM+
Sbjct: 313 DDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGK 372
Query: 374 KPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVA+AQR+E+R+ARLQ Q +
Sbjct: 373 KPLYVAVAQRREERKARLQAHFTQIQ 398
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 265/398 (66%), Positives = 319/398 (80%), Gaps = 10/398 (2%)
Query: 12 NGGGANAN---------QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR 62
+GGGA + +F SLYVGDL+ + + QLYDLF Q+ V+S+RVCRD + R
Sbjct: 452 SGGGAAVHGDDGTYCGGRFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARR 511
Query: 63 RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKA 122
SLGY YVNF++ Q+A ALE LNFTPLNGKPIR+M+SHRDPS+RKSG N+FIKNLD +
Sbjct: 512 ASLGYAYVNFASPQDATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPS 571
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
ID+KAL DTF+AFG +LSCK+A D NGQSKGYGFVQF+ EE+AQ AI++LNGML+NDKQV
Sbjct: 572 IDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQV 631
Query: 183 YVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
YVG F+R QER+ KFTNVYVKNLSE+TT++DL+ FG+YG+ITSAVVMRD G S
Sbjct: 632 YVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMS 691
Query: 243 KCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
KCFGFVNF++SD AA AVE LNG F DDK WYVGKAQ+KSERE EL+ +FEQ K +
Sbjct: 692 KCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFE 751
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361
KF+G NLY+KNLDDS++DEKLK+LFS FG+ITSCKVM DP G+S+GSGFVAF TPEEA+R
Sbjct: 752 KFKGTNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATR 811
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
AL MNGKM+ KPLYVA+AQRKE+R+ARLQ Q R
Sbjct: 812 ALNVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 849
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 261/386 (67%), Positives = 313/386 (81%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G A A QF +SLYVGDLE NV + QL+DLF+Q+ QVVS+RVCRD + R SLGY YVNFS
Sbjct: 23 GTAEAGQFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFS 82
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N Q+A+ A+E+LNFTPLNGK IR+M SHRDPS+RKSG N+FIKNLD +ID+KAL +TF+
Sbjct: 83 NPQDASNAMELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFA 142
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+FG++LSCKVA D NGQSKGYGFVQF+NEE+AQ AI +LNGML+NDK+V+VG F+R QER
Sbjct: 143 SFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQER 202
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
KFTNVYVKNLSE+T++EDL+K F YG ITSA+VM+D GKSK FGFVNF++
Sbjct: 203 IEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSP 262
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
D AA AVE LNG F+DK WYVG+AQ+K ERE ELK +FEQ +K + ANLY+KNL
Sbjct: 263 DSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNL 322
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDEKLK+LFS FGSITSCKVM D G+S+GSGFVAFSTPEEASRAL MNGKM+
Sbjct: 323 DDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGK 382
Query: 374 KPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVA+AQR+E+R+ARLQ Q +
Sbjct: 383 KPLYVAVAQRREERKARLQAHFTQIQ 408
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust.
Identities = 263/388 (67%), Positives = 315/388 (81%), Gaps = 5/388 (1%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GGG F SLYVGDLE NV + QLYDLF+Q+ Q+ S+RVCRD + R SLGY YVNF
Sbjct: 28 GGGP----FANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNF 83
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
+NAQ+A+ A+E+LNFTPLNGKPIR+M+S RDPS+RKSG GN+FIKNLD +ID+KALHDTF
Sbjct: 84 ANAQDASNAMELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTF 143
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+AFG +LSCKVA D +GQSKGYGFVQFDNEE+AQ AI++LNGML+NDKQVYVG F+R+QE
Sbjct: 144 AAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQE 203
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
R+ KFTNVYVKNLSE+ T+EDL+K FG YGTITSA VM+D +GKS+CFGFVNF+N
Sbjct: 204 REQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQN 263
Query: 253 SDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
D AA AVE LNG +D+ YVG+AQ+K+ERE ELK + EQ +K QGANLY+K
Sbjct: 264 PDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLK 323
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDDS DEKLK LFS FG+ITSCKVM D +G S+GSGFV+FSTPEEAS+AL EMNGK++
Sbjct: 324 NLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLI 383
Query: 372 VSKPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVA+AQRKE+R+A LQ Q R
Sbjct: 384 GRKPLYVAVAQRKEERKAHLQAQFAQIR 411
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust.
Identities = 263/388 (67%), Positives = 315/388 (81%), Gaps = 5/388 (1%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GGG F SLYVGDLE NV + QLYDLF+Q+ Q+ S+RVCRD + R SLGY YVNF
Sbjct: 28 GGGP----FANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNF 83
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
+NAQ+A+ A+E+LNFTPLNGKPIR+M+S RDPS+RKSG GN+FIKNLD +ID+KALHDTF
Sbjct: 84 ANAQDASNAMELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTF 143
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+AFG +LSCKVA D +GQSKGYGFVQFDNEE+AQ AI++LNGML+NDKQVYVG F+R+QE
Sbjct: 144 AAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQE 203
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
R+ KFTNVYVKNLSE+ T+EDL+K FG YGTITSA VM+D +GKS+CFGFVNF+N
Sbjct: 204 REQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQN 263
Query: 253 SDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
D AA AVE LNG +D+ YVG+AQ+K+ERE ELK + EQ +K QGANLY+K
Sbjct: 264 PDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLK 323
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDDS DEKLK LFS FG+ITSCKVM D +G S+GSGFV+FSTPEEAS+AL EMNGK++
Sbjct: 324 NLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLI 383
Query: 372 VSKPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVA+AQRKE+R+A LQ Q R
Sbjct: 384 GRKPLYVAVAQRKEERKAHLQAQFAQIR 411
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust.
Identities = 262/375 (69%), Positives = 317/375 (84%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ NVTDSQLYD F ++ QVVSVRVCRD +T SLGYGYVN+SN +A +A++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN++ LNGK IR+ YS RD S R+SG GN+F+KNLDK++D+K LH+ FS G I+SCKVA
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD GQS+GYGFVQFD E+SA+ AIEKLNG +LNDKQ++VG FLRK+ER++ +K KFTN
Sbjct: 167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTN 226
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VYVKNLSE+TT+++L+ +FG+YG+I+SAVVMRDGDGKS+CFGFVNFEN +DAARAVEALN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GKKFDDKEWYVGKAQKKSERELEL ++EQ + +KF G NLY+KNLDD++ DEKL++
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LF+ FG+ITSCKVMRDPSG S+GSGFVAFS EASR L EMNGKMV KPLYVALAQRK
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Query: 385 EDRRARLQVCLLQCR 399
E+RRA+LQ Q R
Sbjct: 407 EERRAKLQAQFSQMR 421
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 262/375 (69%), Positives = 317/375 (84%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ NVTDSQLYD F ++ QVVSVRVCRD +T SLGYGYVN+SN +A +A++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN++ LNGK IR+ YS RD S R+SG GN+F+KNLDK++D+K LH+ FS G I+SCKVA
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD GQS+GYGFVQFD E+SA+ AIEKLNG +LNDKQ++VG FLRK+ER++ +K KFTN
Sbjct: 167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTN 226
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VYVKNLSE+TT+++L+ +FG+YG+I+SAVVMRDGDGKS+CFGFVNFEN +DAARAVEALN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GKKFDDKEWYVGKAQKKSERELEL ++EQ + +KF G NLY+KNLDD++ DEKL++
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LF+ FG+ITSCKVMRDPSG S+GSGFVAFS EASR L EMNGKMV KPLYVALAQRK
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Query: 385 EDRRARLQVCLLQCR 399
E+RRA+LQ Q R
Sbjct: 407 EERRAKLQAQFSQMR 421
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/385 (67%), Positives = 314/385 (81%), Gaps = 2/385 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A F ++SLYVGDL+ +V + QL +LF Q+ QVVS+RVCRD + R+SLGY YVNFS+
Sbjct: 27 ATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSH 86
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
Q+A A+E LNFTP+NGKPIR+M S+RDPS+RKSG N+FIKNLD +ID+KAL DTF+AF
Sbjct: 87 QDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAF 146
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LSCKVA D NGQSKGYGFVQF++EESA+ +IEKLNGMLLNDKQVYVGHF+R QER
Sbjct: 147 GTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQER-I 205
Query: 196 EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
N S+FTNVYVKNL E+TT++DL+ F +GTITSA+VM D +GKSKCFGFVNF+N+D
Sbjct: 206 RANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDS 265
Query: 256 AARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
AA AVE L+G DDK YVG+AQ+K+ERE ELK +FEQ K +K QGANLYIKNLD
Sbjct: 266 AAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLD 325
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDEKLK+LFS +G+ITSCKVM D G+S+GSGFVAFS+P+EA++AL EMNGKM K
Sbjct: 326 DHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRK 385
Query: 375 PLYVALAQRKEDRRARLQVCLLQCR 399
PLYVA+AQRKE+R+ARLQ Q R
Sbjct: 386 PLYVAVAQRKEERKARLQAQFAQIR 410
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 258/385 (67%), Positives = 314/385 (81%), Gaps = 2/385 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A F ++SLYVGDL+ +V + QL +LF Q+ QVVS+RVCRD + R+SLGY YVNFS+
Sbjct: 27 ATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSH 86
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
Q+A A+E LNFTP+NGKPIR+M S+RDPS+RKSG N+FIKNLD +ID+KAL DTF+AF
Sbjct: 87 QDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAF 146
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LSCKVA D NGQSKGYGFVQF++EESA+ +IEKLNGMLLNDKQVYVGHF+R QER
Sbjct: 147 GTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQER-I 205
Query: 196 EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
N S+FTNVYVKNL E+TT++DL+ F +GTITSA+VM D +GKSKCFGFVNF+N+D
Sbjct: 206 RANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDS 265
Query: 256 AARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
AA AVE L+G DDK YVG+AQ+K+ERE EL+ +FEQ K +K QGANLYIKNLD
Sbjct: 266 AAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRFEKLQGANLYIKNLD 325
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDEKLK+LFS +G+ITSCKVM D G+S+GSGFVAFS+P+EA++AL EMNGKM K
Sbjct: 326 DHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRK 385
Query: 375 PLYVALAQRKEDRRARLQVCLLQCR 399
PLYVA+AQRKE+R+ARLQ Q R
Sbjct: 386 PLYVAVAQRKEERKARLQAQFAQIR 410
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 251/380 (66%), Positives = 306/380 (80%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
QF SLYVGDLE NV + QL+DLF+Q+ VVS RVCRD + SLGY YVNFSN Q+AA
Sbjct: 29 QFPNRSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAA 88
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+A+E+LNFTPLNGKPIR+M+SHRDP+ R+SG N+FIKNLD ID+KAL++TF++FG +L
Sbjct: 89 KAMEVLNFTPLNGKPIRIMFSHRDPTTRRSGHANVFIKNLDTKIDNKALYETFASFGPVL 148
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
SCKVA D NGQSKGYGF+QF+NEE AQ AI +LNGML+ND++VYVG F+R+ ER
Sbjct: 149 SCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGPFVRRLERIEANGS 208
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
KFTNVYVKNLSE+T++EDL+K F YG ITSA+VM+D +GKS+ FGFVNF++ D AA A
Sbjct: 209 PKFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAA 268
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VE LNG F DK WYVG+AQ+K ERE ELK +FEQ +K + ANLY+KNL D+ID+
Sbjct: 269 VEKLNGMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDE 328
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
E+LK+LFS FGSITSCKVM D G+S+GSGFVAFSTPEEASRAL EMNGKM+ KPLYVA
Sbjct: 329 ERLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVA 388
Query: 380 LAQRKEDRRARLQVCLLQCR 399
+AQR+E+R ARLQ Q +
Sbjct: 389 IAQRREERMARLQAHFSQIQ 408
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 239/372 (64%), Positives = 310/372 (83%), Gaps = 3/372 (0%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F +T+LYVGDL+ +V ++Q++D+F Q+G V+SVR+CRD+ T+RSLGY YVN++N Q+A+R
Sbjct: 12 FASTALYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQDASR 71
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
A+E LNF P+NGKP+R+M+S+RDPS+RKSG+GN+F+KNLDK+ID+KALHD FS +G ILS
Sbjct: 72 AIEELNFMPVNGKPVRIMFSYRDPSIRKSGSGNLFVKNLDKSIDNKALHDLFSPYGKILS 131
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CK+A D++ SKG+GFVQFD E++A AIEK+NG L+DKQ++VG F+R+QERD S
Sbjct: 132 CKIALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVRRQERDPP--AS 189
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NV+VKNLSE TT+EDLQK FG +G I+SAVVM++ DGKSKCFGFVNFEN +DA +AV
Sbjct: 190 KFNNVFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDGKSKCFGFVNFENPEDAVKAV 249
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E L+G F DKE YV +AQKK+ERE ELK +FE K+ DK NLY+KNLDD IDDE
Sbjct: 250 EDLHGTTFQDKELYVSRAQKKNEREAELKAKFEHERKDTEDK-SPTNLYLKNLDDGIDDE 308
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK +FS FG++TSCKVMRDP G S+GSGFVAFST + A RA+ +MNGKM+ SKPLYVA+
Sbjct: 309 KLKDMFSAFGNVTSCKVMRDPLGHSKGSGFVAFSTSDAALRAVAQMNGKMIGSKPLYVAM 368
Query: 381 AQRKEDRRARLQ 392
AQ+KE+R+A+L+
Sbjct: 369 AQKKEERKAKLE 380
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 162/287 (56%), Gaps = 20/287 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ +L+V +L+ ++ + L+DLF+ G+++S ++ D+S S G+G+V F A A
Sbjct: 101 GSGNLFVKNLDKSIDNKALHDLFSPYGKILSCKIALDVSNV-SKGHGFVQFDTEDAAHTA 159
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
+E +N T L+ K + V RDP K N+F+KNL + + L F FG
Sbjct: 160 IEKINGTTLHDKQLFVGPFVRRQERDPPASK--FNNVFVKNLSEITTDEDLQKLFGVFGP 217
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
I S V +++G+SK +GFV F+N E A KA+E L+G DK++YV +K ER+ E+
Sbjct: 218 ISSAVVMKEVDGKSKCFGFVNFENPEDAVKAVEDLHGTTFQDKELYVSRAQKKNEREAEL 277
Query: 198 NKSKF------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
K+KF TN+Y+KNL + +E L+ F +G +TS VMRD G SK
Sbjct: 278 -KAKFEHERKDTEDKSPTNLYLKNLDDGIDDEKLKDMFSAFGNVTSCKVMRDPLGHSKGS 336
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
GFV F SD A RAV +NGK K YV AQKK ER+ +L+ QF
Sbjct: 337 GFVAFSTSDAALRAVAQMNGKMIGSKPLYVAMAQKKEERKAKLEAQF 383
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/378 (64%), Positives = 297/378 (78%), Gaps = 3/378 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLY GDL+ VT++ L+DLF + VVSVRVCRD RRSLGY Y+NFSN +A RA+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAME 107
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TPL +PIR+M S+RDPS R SG GNIFIKNLD +ID+KAL +TFS+FG ILSCKV
Sbjct: 108 ALNYTPLFERPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKSK 201
A D+ G+SKGYGFVQF+ EESAQ AI+KLNGML+NDKQV+VGHF+R+QER D +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + E++L+K+FG++G I+SAVVMRD G S+CFGFVNFE ++ AA AVE
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG D YVG+AQKKSERE EL+ +FEQ +K QGANLY+KNLDDS+DDEK
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+ KPLY+ALA
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGLSRGFGFVAYSNPEEALRALSEMNGKMIGKKPLYIALA 407
Query: 382 QRKEDRRARLQVCLLQCR 399
QRKEDRRA LQ Q R
Sbjct: 408 QRKEDRRAHLQALFSQIR 425
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/378 (64%), Positives = 297/378 (78%), Gaps = 3/378 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLY GDL+ VT++ L+DLF + VVSVRVCRD RRSLGY Y+NFSN +A RA+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAME 107
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TPL +PIR+M S+RDPS R SG GNIFIKNLD +ID+KAL +TFS+FG ILSCKV
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKSK 201
A D+ G+SKGYGFVQF+ EESAQ AI+KLNGML+NDKQV+VGHF+R+QER D +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + E++L+K+FG++G I+SAVVMRD G S+CFGFVNFE ++ AA AVE
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG D YVG+AQKKSERE EL+ +FEQ +K QGANLY+KNLDDS+DDEK
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+ KPLY+ALA
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 382 QRKEDRRARLQVCLLQCR 399
QRKEDRRA LQ Q R
Sbjct: 408 QRKEDRRAHLQALFSQIR 425
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/378 (64%), Positives = 297/378 (78%), Gaps = 3/378 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLY GDL+ VT++ L+DLF + VVSVRVCRD RRSLGY Y+NFSN +A RA+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAME 107
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TPL +PIR+M S+RDPS R SG GNIFIKNLD +ID+KAL +TFS+FG ILSCKV
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKSK 201
A D+ G+SKGYGFVQF+ EESAQ AI+KLNGML+NDKQV+VGHF+R+QER D +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + E++L+K+FG++G I+SAVVMRD G S+CFGFVNFE ++ AA AVE
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG D YVG+AQKKSERE EL+ +FEQ +K QGANLY+KNLDDS+DDEK
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+ KPLY+ALA
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 382 QRKEDRRARLQVCLLQCR 399
QRKEDRRA LQ Q R
Sbjct: 408 QRKEDRRAHLQALFSQIR 425
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/377 (64%), Positives = 309/377 (81%), Gaps = 5/377 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A +F +SLYVGDL+ NV D+QLYDLF+Q+ V+SVRVCRD T+ SLGYGYVN+SNA+
Sbjct: 18 SAGRFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNAR 77
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+AA A+E LN+ PLNGKPIR+M+SHRDP +RK+G N+FIKNL+ +ID+KALH+TFS FG
Sbjct: 78 DAANAMENLNYVPLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFG 137
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
N+LSCKVA D NG SKG+GFVQFDN++SA+ AIEKL+G L+NDK+VYVG+F+R QER +
Sbjct: 138 NVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYFVRCQERSS- 196
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
KFTNVYVKNLSES T EDL++ F +G ITS +M+D +G SK FGFVNF++SD A
Sbjct: 197 ---PKFTNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSA 253
Query: 257 ARAVEALNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A AVE LNG +D K +VG+AQKKSERE ELK FEQ + +KFQGANLY+KN+D
Sbjct: 254 ATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDK 313
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
S+++EKLK+LFS FG+ITSCKVM D G S+G GFVAF+TPEEAS+A+ EMNGK++ KP
Sbjct: 314 SLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKP 373
Query: 376 LYVALAQRKEDRRARLQ 392
+YV++AQRKE+R+A+LQ
Sbjct: 374 VYVSVAQRKEERKAQLQ 390
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 162/284 (57%), Gaps = 14/284 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L++ +LE ++ + L++ F+ G V+S +V D S S G+G+V F N Q A A
Sbjct: 111 GFANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMD-SNGHSKGHGFVQFDNDQSAKNA 169
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+E L+ +N K + V Y R N+++KNL ++ ++ L F+ FG I S
Sbjct: 170 IEKLDGRLMNDKKVYVGYFVRCQERSSPKFTNVYVKNLSESYTNEDLKQLFNTFGVITSV 229
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV-YVGHFLRKQERDTEIN-- 198
K+ D NG SK +GFV F + +SA A+EKLNG ND +V +VG +K ER+ E+
Sbjct: 230 KIMKDENGNSKRFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAF 289
Query: 199 ----------KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
K + N+Y+KN+ +S EE L++ F E+GTITS VM D G+SK GFV
Sbjct: 290 FEQEKLKRYEKFQGANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFV 349
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
F ++A++A++ +NGK K YV AQ+K ER+ +L+ F
Sbjct: 350 AFTTPEEASKAIDEMNGKIIGQKPVYVSVAQRKEERKAQLQAHF 393
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/372 (64%), Positives = 296/372 (79%), Gaps = 3/372 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLY GDL+ VT++ L+DLF + VVSVRVCRD RRSLGY Y+NFSN +A RA+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAME 107
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TPL +PIR+M S+RDPS R SG GNIFIKNLD +ID+KAL +TFS+FG ILSCKV
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKSK 201
A D+ G+SKGYGFVQF+ EESAQ AI+KLNGML+NDKQV+VGHF+R+QER D +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + E++L+K+FG++G I+SAVVMRD G S+CFGFVNFE ++ AA AVE
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG D YVG+AQKKSERE EL+ +FEQ +K QGANLY+KNLDDS+DDEK
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+ KPLY+ALA
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 382 QRKEDRRARLQV 393
QRKEDRRA LQ+
Sbjct: 408 QRKEDRRAHLQI 419
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/390 (62%), Positives = 305/390 (78%), Gaps = 3/390 (0%)
Query: 10 NVNGGGANANQ--FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 67
N +G A Q GT+SLYVGDLE +VT++QLY+ F+ +G VVS+RVCRDL TRRSLGY
Sbjct: 21 NADGTTPAAQQPGAGTSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGY 80
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
YVNF + +AA A+++LNF +NGKPIRV+YS RDP++R+SG GNIFIKNLDKAID+KA
Sbjct: 81 AYVNFQSPNDAAHAIDVLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKA 140
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L DTF+ FG I S KVA D G SKGYGFVQF+ +E+AQ AI+ +NGM LNDKQVYVG F
Sbjct: 141 LLDTFAQFGTITSAKVAMDGQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQVYVGPF 200
Query: 188 LRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
R+ ER + ++KF NVYVKNLSE+ ++E L++ F E+G +TS V+MRD +GKSK FGF
Sbjct: 201 QRRAER-SNTGEAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGKSKGFGF 259
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
V +E + AA AVE L+G D+K W V +AQKK+ERE ELK +F+Q +E +K GAN
Sbjct: 260 VCYEEPEGAAAAVEKLDGYTEDEKTWVVCRAQKKAEREAELKAKFDQERRERMEKMAGAN 319
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LYIKNL+D DDEKL++LF FG+ITSC+VMRD SG+SRGS FVAFS+P+EA+RA+ EMN
Sbjct: 320 LYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPDEATRAVTEMN 379
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
GKMV +KPLYVALAQRKE+RR RLQ Q
Sbjct: 380 GKMVGAKPLYVALAQRKEERRMRLQAQFAQ 409
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 157/294 (53%), Gaps = 18/294 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L D F Q G + S +V D S GYG+V F + A A
Sbjct: 123 GVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKVAMD-GQGNSKGYGFVQFETQEAAQAA 181
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG---NIFIKNLDKAIDHKALHDTFSAFGNI 138
++ +N LN K + V R +G N+++KNL + + + L + F+ G +
Sbjct: 182 IDNVNGMELNDKQVYVGPFQRRAERSNTGEAKFNNVYVKNLSENLSDEKLREKFAEHGAV 241
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
SC + D G+SKG+GFV ++ E A A+EKL+G ++K V +K ER+ E+
Sbjct: 242 TSCVIMRDEEGKSKGFGFVCYEEPEGAAAAVEKLDGYTEDEKTWVVCRAQKKAEREAEL- 300
Query: 199 KSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
K+KF N+Y+KNL + T +E L++ F E+GTITS VMRD G S+
Sbjct: 301 KAKFDQERRERMEKMAGANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDASGVSRGS 360
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
FV F + D+A RAV +NGK K YV AQ+K ER + L+ QF Q M A
Sbjct: 361 AFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRKEERRMRLQAQFAQRMPGA 414
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/378 (64%), Positives = 298/378 (78%), Gaps = 3/378 (0%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
TSLY GDL+ + T++QLY+LF+ +G VVS+RVCRDL TRRSLGY YVNF +AAR
Sbjct: 29 LSATSLYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAAR 88
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
A++ LNF +NGKPIR+MYS RDP+LRKSG GNIFIKNLDK ID+KAL+DTF+ FGNI+S
Sbjct: 89 AIDALNFQVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFAQFGNIVS 148
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
KVATDL GQSKGYGFVQFD EE AQ AIEK+NGMLLNDKQVYVG F ++ ER +
Sbjct: 149 AKVATDLQGQSKGYGFVQFDTEEGAQSAIEKVNGMLLNDKQVYVGPFQKRNERGG--GPT 206
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
F NVYVKNL ES TEE L++ F ++G +TS VVM+D +GKSK FGFV +E+++ A ++V
Sbjct: 207 TFNNVYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAAGKSV 266
Query: 261 EALNG-KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
E L+G K +DK W V +AQKKSERE ELK +F+ +E +K GANLYIKNL+D++DD
Sbjct: 267 EELDGYDKIEDKAWVVCRAQKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDTVDD 326
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
KL++LF+ FG+ITSC+VMRD +G SRGS FVAFS+ +EA+RA+ EMNGKM KPLYVA
Sbjct: 327 AKLRELFAEFGTITSCRVMRDTAGASRGSAFVAFSSADEATRAVTEMNGKMAGQKPLYVA 386
Query: 380 LAQRKEDRRARLQVCLLQ 397
LAQRKEDRR RLQ Q
Sbjct: 387 LAQRKEDRRLRLQAQFAQ 404
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/375 (64%), Positives = 301/375 (80%), Gaps = 3/375 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVGDLE++ T++QLY+LF+ +G VVS+RVCRDL TRRSLGY YVNFS AQ+AARA++
Sbjct: 43 TSLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAID 102
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+LNF +NGKPIR++YS RDP++RKSG GNIFIKNLDK ID AL DTF+ FGNI+S KV
Sbjct: 103 VLNFQVVNGKPIRILYSQRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFGNIVSAKV 162
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
ATD G SKGYGF+QFD E +A++AIEK+NGM LNDK VYVG F R+ ER T ++KF
Sbjct: 163 ATDGQGNSKGYGFIQFDTEAAAKEAIEKVNGMELNDKVVYVGPFQRRAERGT--TETKFN 220
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NV+VKNL + T+E+L+K F +G +TS ++ +D DGKSK FGFV +E +DA++AVE L
Sbjct: 221 NVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKDEDGKSKGFGFVCYETPEDASKAVEEL 280
Query: 264 NGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+GK +DK+W V +AQKK+ERE ELK +FE +E +K GANLYIKNL+D DDE L
Sbjct: 281 DGKHGEEDKKWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEDGADDETL 340
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++LF FG+ITSC+VMRD SG+SRGS FVAFS+PEEA+RA+ E+NGKMV +KPLYVALAQ
Sbjct: 341 RELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPEEATRAVTELNGKMVGAKPLYVALAQ 400
Query: 383 RKEDRRARLQVCLLQ 397
RKEDRR RLQ Q
Sbjct: 401 RKEDRRMRLQAQFAQ 415
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/381 (64%), Positives = 298/381 (78%), Gaps = 2/381 (0%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q G SLYVGDLE NV ++QL+ LF ++G + S+RVCRD T RSLGY YVNF N Q+AA
Sbjct: 2 QSGNASLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRD-ETNRSLGYAYVNFVNPQDAA 60
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
A+E LNFTPLNGK IRVM+S+RDPS+RKSG N+FIKNLD +ID+K LHDTF+AFG +L
Sbjct: 61 NAMEHLNFTPLNGKSIRVMFSNRDPSIRKSGYANVFIKNLDISIDNKTLHDTFAAFGFVL 120
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
S KVA D GQSKGYGFVQFDNEESAQ AI++LNGML+NDK+VYVG F+ +QER
Sbjct: 121 SSKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLFVNRQERAQVDGS 180
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
KFTNVYVKN SE+ T+EDL++ F YGTITSAVVM+D DGKS+CFGFVNFE+ D A A
Sbjct: 181 PKFTNVYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAA 240
Query: 260 VEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
VE LNG DDK YVG+AQ+K+ERE ELK +FE +K+ G NLY+KNLD +I+
Sbjct: 241 VERLNGTTVNDDKVLYVGRAQRKAEREAELKARFELERIRKYEKYHGTNLYVKNLDYNIN 300
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D+KLK+LFS FG+ITSCKVM +P+G S+G GFVAFS P A+RAL EMNGKM+ +PLYV
Sbjct: 301 DDKLKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNANRALHEMNGKMIGRRPLYV 360
Query: 379 ALAQRKEDRRARLQVCLLQCR 399
A+AQRKE+R+A L+ Q
Sbjct: 361 AVAQRKEERKALLEAQFSQMH 381
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/378 (62%), Positives = 302/378 (79%), Gaps = 3/378 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL+ +V + QL DLFNQ+ V +VRVCRDL TRRSLGY YVNF+N ++A+RA++
Sbjct: 58 SSLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDL-TRRSLGYAYVNFANPEDASRAMD 116
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+ P+ +PIR+M S+RDPS R SG GN+FIKNLD +ID+KAL++TFSAFG ILSCKV
Sbjct: 117 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILSCKV 176
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--K 201
A D G+SKGYGFVQF+ EE+AQ AI+KLNGMLLNDKQV+VGHF+R+Q+R + + +
Sbjct: 177 AMDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESGAVPR 236
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + T+++L+K+FG+YG I+SAVVM+D G S+ FGFVNFE+ + AA AVE
Sbjct: 237 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAVE 296
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG + YVG+AQKKSERE EL+ +FEQ +K QG+NLY+KNLDDS++DEK
Sbjct: 297 KMNGISLGEDVLYVGRAQKKSEREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 356
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TSCKVM + G+SRG GFVA+S+PEEASRAL EMNGKM+ KPLYVA A
Sbjct: 357 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSSPEEASRALSEMNGKMIGRKPLYVAFA 416
Query: 382 QRKEDRRARLQVCLLQCR 399
QRKE+RRA LQ R
Sbjct: 417 QRKEERRAHLQTLFTHIR 434
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/378 (64%), Positives = 297/378 (78%), Gaps = 3/378 (0%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
TSLY GDL++N T++QLY+LF+ +G VVS+RVCRDL TRRSLGY YVNF +AAR
Sbjct: 17 LSATSLYCGDLDSNCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGADAAR 76
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
A+++LNF +NGKPIR+MYS RDP+LRKSG GNIFIKNLDK ID+KAL+DTFS FGNI+S
Sbjct: 77 AIDVLNFNVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFSQFGNIVS 136
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
KVA D G SKGYGFVQF +E+AQ+AI+K+NGMLLNDKQVYVG F R+ ER +
Sbjct: 137 AKVAADGQGVSKGYGFVQFAEQEAAQQAIDKVNGMLLNDKQVYVGPFQRRGERGG--GPT 194
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
F NVYVKNL ES E+ L++ FG G +TS V+M+DG+GKSK FGFV FE S+ A+ AV
Sbjct: 195 TFNNVYVKNLHESVDEDKLKEVFGAVGKLTSVVIMKDGEGKSKGFGFVCFEESEAASEAV 254
Query: 261 EALNG-KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
E L+G K +DK W V +AQKK+ERE ELK +F+ +E +K GANLYIKNL+D++DD
Sbjct: 255 EKLDGYDKIEDKAWVVCRAQKKAEREAELKAKFDAERRERLEKMAGANLYIKNLEDTVDD 314
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
KL++LF+ FG+ITSC+VMRD SG SRGS FVAFS+ +EA+RA+ EMNGKM +KPLYVA
Sbjct: 315 AKLRELFAEFGTITSCRVMRDASGASRGSAFVAFSSADEATRAVTEMNGKMAGTKPLYVA 374
Query: 380 LAQRKEDRRARLQVCLLQ 397
LAQRKEDRR RLQ Q
Sbjct: 375 LAQRKEDRRMRLQAQFAQ 392
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/367 (63%), Positives = 295/367 (80%), Gaps = 1/367 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T+SLYVGDLE +VT++QLY+ F+ +G VVS+RVCRDL TRRSLGY YVNF ++ +AA A+
Sbjct: 31 TSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAI 90
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
++LNF +NGKPIRV+YS RDP++R+SG GNIFIKNLDKAID+KAL DTF+ FG I S K
Sbjct: 91 DVLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAK 150
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
VA D G SKGYGFVQF+ E+AQ AI+ +NGM LNDKQVYVG F R+ +R T+ ++KF
Sbjct: 151 VAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGPFQRRADRSTQ-GEAKF 209
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
NVYVKNLSE+ ++E L++ F E+G +TS V+M+D +GKSK FGFV FE+ + AA AVE
Sbjct: 210 NNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVEN 269
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
L+G D+K W V +AQKK+ERE ELK +FE +E +K GANLYIKNL++ DDEKL
Sbjct: 270 LDGYTEDEKTWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEEGTDDEKL 329
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++LF+ FG+ITSC+VMRD SG SRGS FVAFS+P+EA+RA+ EMNGKMV +KPLYVALAQ
Sbjct: 330 RELFNEFGTITSCRVMRDASGASRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQ 389
Query: 383 RKEDRRA 389
RKE+ A
Sbjct: 390 RKEEPHA 396
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 166/282 (58%), Gaps = 18/282 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L+ ++ L++ FS+ G ++S +V DL +S GY +V F + A AI+
Sbjct: 33 SLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAIDV 92
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++N K + V + +RD + +S N+++KNL ++ + L +F ++GTITS
Sbjct: 93 LNFQVINGKPIRVLY----SQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITS 148
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
A V D G SK +GFV FE ++ A A++ +NG + +DK+ YVG Q++++R + + +
Sbjct: 149 AKVAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGPFQRRADRSTQGEAK 208
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
F N+Y+KNL +++ DEKL++ F+ G++TSC +M+D G S+G GFV
Sbjct: 209 FN-------------NVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFV 255
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQV 393
F +PE A+ A+ ++G K V AQ+K +R A L+
Sbjct: 256 CFESPEGAASAVENLDGYTEDEKTWVVCRAQKKAEREAELKA 297
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/378 (60%), Positives = 299/378 (79%), Gaps = 3/378 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL+ +V +S L DLFNQ+ V ++RVCRDL T RSLGY YVNF+N ++A+RA+E
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+ P+ +PIR+M S+RDPS R SG GN+FIKNLD +ID+KAL++TFS+FG ILSCKV
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 177
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--K 201
A D+ G+SKGYGFVQF+ EE+AQ AI+KLNGMLLNDKQV+VGHF+R+Q+R + +
Sbjct: 178 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS 237
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + T+++L+K+FG+YG I+SAVVM+D G S+ FGFVNF + + AA AVE
Sbjct: 238 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 297
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG + YVG+AQKKS+RE EL+ +FEQ +K QG+NLY+KNLDDS++DEK
Sbjct: 298 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TSCKVM + G+SRG GFVA+S PEEA A+ EMNGKM+ KPLYVALA
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 417
Query: 382 QRKEDRRARLQVCLLQCR 399
QRKE+R+A LQ Q R
Sbjct: 418 QRKEERQAHLQSLFTQIR 435
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 225/372 (60%), Positives = 301/372 (80%), Gaps = 4/372 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA---R 80
+SLYVGDL+ +VT++QL+++F+Q+G V S+RVCRD TRRSLGY YVN+++ + A R
Sbjct: 38 SSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAER 97
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+TPL G+P+R+M+SHRDP+ RKSG GNIFIKNLD+++D+KALHDTFSAFGNILS
Sbjct: 98 ALDQLNYTPLVGRPMRIMWSHRDPAFRKSGVGNIFIKNLDRSVDNKALHDTFSAFGNILS 157
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA DL G+SKGYGFV F+ +ESA+ AIEK+NGMLL K+VYVG FLR+ ER ++ ++
Sbjct: 158 CKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVGPFLRRSERSSD-SEV 216
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTNV+VKNL E+ ++++++ F E+GT+ S ++MRD +GKSK FGF+NFE + AA AV
Sbjct: 217 KFTNVFVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASAV 276
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ALNGK + KE YVG+AQKK+ERE L+ +FE+ E K+QG NLY+KNL D IDDE
Sbjct: 277 QALNGKDVNCKELYVGRAQKKAEREAMLRAKFEELRSERIAKYQGMNLYVKNLHDDIDDE 336
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L+ FS FG+ITS KVM D +G SRG GFV +++PEEA+RA+ EMNG+M+ KP+YVAL
Sbjct: 337 TLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPEEATRAVTEMNGRMIKGKPIYVAL 396
Query: 381 AQRKEDRRARLQ 392
AQR++ RRA+L+
Sbjct: 397 AQRRDVRRAQLE 408
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 165/295 (55%), Gaps = 26/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ +V + L+D F+ G ++S +V +DL S GYG+V+F + A A
Sbjct: 127 GVGNIFIKNLDRSVDNKALHDTFSAFGNILSCKVAQDLKGE-SKGYGFVHFEKDESARLA 185
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG--------NIFIKNLDKAIDHKALHDTFS 133
+E +N L GK + V P LR+S N+F+KNLD+A+ + F+
Sbjct: 186 IEKVNGMLLEGKKVYV-----GPFLRRSERSSDSEVKFTNVFVKNLDEAVSDDEVKAMFA 240
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
G + SC + D G+SKG+GF+ F+ E A A++ LNG +N K++YVG +K ER
Sbjct: 241 EHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYVGRAQKKAER 300
Query: 194 DT------------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+ I K + N+YVKNL + +E L+ F ++GTITSA VM D GK
Sbjct: 301 EAMLRAKFEELRSERIAKYQGMNLYVKNLHDDIDDETLRTEFSQFGTITSAKVMVDSAGK 360
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
S+ FGFV + + ++A RAV +NG+ K YV AQ++ R +L+ Q++Q +
Sbjct: 361 SRGFGFVCYASPEEATRAVTEMNGRMIKGKPIYVALAQRRDVRRAQLEQQYQQRV 415
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 98/192 (51%), Gaps = 14/192 (7%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
+++YV +L TE L + F + G + S V RD +S + +VN+ + D A A
Sbjct: 38 SSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAER 97
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ + VG+ + + H+ A K N++IKNLD S+D++
Sbjct: 98 ALDQLNYTP---LVGRPMR-----IMWSHR-----DPAFRKSGVGNIFIKNLDRSVDNKA 144
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L FS FG+I SCKV +D G S+G GFV F E A A+ ++NG ++ K +YV
Sbjct: 145 LHDTFSAFGNILSCKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVGPF 204
Query: 382 QRKEDRRARLQV 393
R+ +R + +V
Sbjct: 205 LRRSERSSDSEV 216
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/378 (60%), Positives = 299/378 (79%), Gaps = 3/378 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL+ +V +S L DLFNQ+ V ++RVCRDL T RSLGY YVNF+N ++A+RA+E
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+ P+ +PIR+M S+RDPS R SG GN+FIKNLD +ID+KAL++TFS+FG ILSCKV
Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 163
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--K 201
A D+ G+SKGYGFVQF+ EE+AQ AI+KLNGMLLNDKQV+VGHF+R+Q+R + +
Sbjct: 164 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS 223
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + T+++L+K+FG+YG I+SAVVM+D G S+ FGFVNF + + AA AVE
Sbjct: 224 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 283
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG + YVG+AQKKS+RE EL+ +FEQ +K QG+NLY+KNLDDS++DEK
Sbjct: 284 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 343
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TSCKVM + G+SRG GFVA+S PEEA A+ EMNGKM+ KPLYVALA
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
Query: 382 QRKEDRRARLQVCLLQCR 399
QRKE+R+A LQ Q R
Sbjct: 404 QRKEERQAHLQSLFTQIR 421
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/378 (60%), Positives = 299/378 (79%), Gaps = 3/378 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL+ +V +S L DLFNQ+ V ++RVCRDL T RSLGY YVNF+N ++A+RA+E
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+ P+ +PIR+M S+RDPS R SG GN+FIKNLD +ID+KAL++TFS+FG ILSCKV
Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 163
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--K 201
A D+ G+SKGYGFVQF+ EE+AQ AI+KLNGMLLNDKQV+VGHF+R+Q+R + +
Sbjct: 164 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS 223
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + T+++L+K+FG+YG I+SAVVM+D G S+ FGFVNF + + AA AVE
Sbjct: 224 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 283
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG + YVG+AQKKS+RE EL+ +FEQ +K QG+NLY+KNLDDS++DEK
Sbjct: 284 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 343
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TSCKVM + G+SRG GFVA+S PEEA A+ EMNGKM+ KPLYVALA
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
Query: 382 QRKEDRRARLQVCLLQCR 399
QRKE+R+A LQ Q R
Sbjct: 404 QRKEERQAHLQSLFTQIR 421
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/390 (60%), Positives = 298/390 (76%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL ++T++ L++ F+ G V+S+RVCRDL TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLD++ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D NG SKGYGFV F+ EE+A K+IEK+NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E TEE L+ F +YG ITS +M DGKSK FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFV 237
Query: 249 NFENSDDAARAVEALNGKK-FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ + A AVEALNGK+ D K YVG+AQKK+ER+ ELK +FE E +++QG N
Sbjct: 238 AFESPEAAETAVEALNGKEIIDGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD+IDDE+L++ FSPFG+ITS KVM + S+G GFV FS+PEEA++A+ EMN
Sbjct: 298 LYVKNLDDTIDDERLRKEFSPFGTITSAKVMME-DNRSKGFGFVCFSSPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G++V SKPLYVALAQRKEDR+A L +Q
Sbjct: 357 GRIVGSKPLYVALAQRKEDRKAHLTSQYMQ 386
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 169/294 (57%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S +V +D S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQD-ENGTSKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R ++ G N+++KN + + + L F +
Sbjct: 156 IEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLTEEQLRTMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRKQERD 194
G I S K+ + +G+SKG+GFV F++ E+A+ A+E LNG +++ K +YVG +K ER
Sbjct: 216 GKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVEALNGKEIIDGKPLYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL ++ +E L+K F +GTITSA VM + D +S
Sbjct: 276 QELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLRKEFSPFGTITSAKVMME-DNRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 335 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLTSQYMQRM 388
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/376 (59%), Positives = 292/376 (77%), Gaps = 2/376 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVG+L+ VT++ L+++FN +G V SVRVCRD TRRSLGY YVN+ N + RAL+
Sbjct: 74 VSLYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALD 133
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + GKP R+M+S RDP LRK+G GNIFIKNLD+ ID+KALHDTF+AFG +LSCKV
Sbjct: 134 QLNYSQIRGKPCRIMWSQRDPGLRKTGQGNIFIKNLDQGIDNKALHDTFAAFGTVLSCKV 193
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSK 201
ATD +G SKGYGFV +D+ E+A+ AI+ +NGMLLNDK+V+VG + ++ER ++I+ KS
Sbjct: 194 ATDDSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFVGQHISRKERQSKIDEMKSH 253
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKNL EE+ + F ++G ITSAV+ +D +G SK FGFVNFEN +DA RAVE
Sbjct: 254 FTNLYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVE 313
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+ K+ K +VG+AQKKSERE EL+ Q+EQ E A K+QG+NLYIKNL+D +DDEK
Sbjct: 314 ELDNKEIHGKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDEK 373
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ F PFG+ITSCKVMRD G S+G GFV FS+P+EA+RA+ EMN K+V +KPLYVALA
Sbjct: 374 LRAEFEPFGTITSCKVMRDEKGTSKGFGFVCFSSPDEATRAMSEMNNKIVGTKPLYVALA 433
Query: 382 QRKEDRRARLQVCLLQ 397
QRK+ R+ +L+ + Q
Sbjct: 434 QRKDVRKQQLESQIAQ 449
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/390 (59%), Positives = 299/390 (76%), Gaps = 8/390 (2%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N GG N + SLYVGDL A++T++ L++ F+ G V+S+RVCRDL TRRSLGY YV
Sbjct: 1 MNPGGPN---YQMASLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D GQSKGYGFV F+ EESA +IEK+NGMLLN+K+V+VG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFVGRFISR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E TEE L + F +YG+ITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMMK-DGKSRGFGFV 236
Query: 249 NFENSDDAARAVEALNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FEN D A RAV+ LN K+ D K YVG+AQKK+ER++ELK +FEQ E ++ G N
Sbjct: 237 AFENPDAAERAVQELNAKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVN 296
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD+IDDE+L++ F+P+G+ITS KVM D G S+G GFV FS P+EA++A+ EMN
Sbjct: 297 LYVKNLDDTIDDERLRKEFAPYGTITSAKVMLD-EGRSKGFGFVCFSAPDEATKAVTEMN 355
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G++V SKPLYVALAQRKE+R++ L +Q
Sbjct: 356 GRIVGSKPLYVALAQRKEERKSHLASQYIQ 385
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 171/295 (57%), Gaps = 24/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V +D +S GYG+V+F + A +
Sbjct: 97 GVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQD-EKGQSKGYGFVHFETEESANTS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN K + V + R ++ G N+++KN + + +ALH+ F +
Sbjct: 156 IEKVNGMLLNEKKVFVGRFISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALHEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV-YVGHFLRKQERD 194
G+I S +V +G+S+G+GFV F+N ++A++A+++LN L+D +V YVG +K ER
Sbjct: 216 GSITSHRVMMK-DGKSRGFGFVAFENPDAAERAVQELNAKELSDGKVLYVGRAQKKNERQ 274
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K +F N+YVKNL ++ +E L+K F YGTITSA VM D +G+
Sbjct: 275 MEL-KRRFEQLKMERLTRYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMLD-EGR 332
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F D+A +AV +NG+ K YV AQ+K ER+ L Q+ Q +
Sbjct: 333 SKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKSHLASQYIQRV 387
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 296/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG +N K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 224/377 (59%), Positives = 293/377 (77%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVNF N + RAL
Sbjct: 38 SASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERAL 97
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + GKP R+M+S RDPSLRK+G+GN+FIKNLD +ID+KALHDTFSAFGNILSCK
Sbjct: 98 ESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDTSIDNKALHDTFSAFGNILSCK 157
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
+A D +G SKGYGFV ++ EE+A AI+ ++GMLLNDK+VYVG + ++ER +I ++
Sbjct: 158 IALDESGNSKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYVGRHIPRKERQAKIEQIRA 217
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTNVYVKNL ES +E ++ F ++G ITSA+V D +GKSK FGF+NFEN +DA +AV
Sbjct: 218 KFTNVYVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAV 277
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN + + K YV +AQKK+ERE EL+ Q+EQ E K+QG NLYIKNLDD IDDE
Sbjct: 278 DTLNETEHNGKTLYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDE 337
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+Q FS +G ITS KVM D G S+G GFV FS+P+EA++A+ EMNG+M+ SKP+YVAL
Sbjct: 338 KLRQEFSVYGVITSAKVMCDEKGTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVAL 397
Query: 381 AQRKEDRRARLQVCLLQ 397
AQRKE RR++L+ + Q
Sbjct: 398 AQRKEVRRSQLEAQMAQ 414
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 17/194 (8%)
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAAR 258
S ++YV L S TE L + F G + S V RD +S + +VNF N D R
Sbjct: 36 SPSASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGER 95
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
A+E+LN K + S+R+ L+ K N++IKNLD SID
Sbjct: 96 ALESLNYTLIKGKPCRI----MWSQRDPSLR------------KTGSGNVFIKNLDTSID 139
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
++ L FS FG+I SCK+ D SG S+G GFV + T E A A+ ++G ++ K +YV
Sbjct: 140 NKALHDTFSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYV 199
Query: 379 ALAQRKEDRRARLQ 392
+++R+A+++
Sbjct: 200 GRHIPRKERQAKIE 213
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 296/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG +N K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/378 (58%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 ASAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 164/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K V + +RD + KS N+++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE+LK+LF FG S KVM D SG S+G GF
Sbjct: 186 R--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNASAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELK 277
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG + K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 296/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG +N K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 176/305 (57%), Gaps = 25/305 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +EA +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ--REAGMR 390
Query: 303 FQGAN 307
AN
Sbjct: 391 ALPAN 395
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 166/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE L++LFS FG S KVMRD SG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 166/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE L++LFS FG S KVMRD SG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELK 277
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG + K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 296/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG +N K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/377 (59%), Positives = 291/377 (77%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVNF N + RAL
Sbjct: 43 SASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERAL 102
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + GKP R+M+S RDPSLRK+G+GN+FIKNLD +ID+KALHDTFSAFGNILSCK
Sbjct: 103 ESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDPSIDNKALHDTFSAFGNILSCK 162
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
+A D +G SKGYGFV ++ EE+A AI+ +NGMLLNDK+VYVG + K+ER +I ++
Sbjct: 163 IALDESGNSKGYGFVHYETEEAADNAIKHVNGMLLNDKKVYVGRHVPKKERQAKIEQFRA 222
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTNVYVKNL ES +E+ + ++G ITSA+V D +GKSK FGFVNFEN +DA +AV
Sbjct: 223 KFTNVYVKNLDESVKDEEFNEMLAKFGPITSALVQTDDEGKSKGFGFVNFENHEDAQKAV 282
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ALN + K YV +AQKK+ERE EL+ Q+EQ E K+QG NLYIKNLDD IDDE
Sbjct: 283 DALNETEHKGKILYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDE 342
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+Q FS +G ITS KVM D S+G GFV FS+P+EA++A+ EMNG+M+ SKP+YVAL
Sbjct: 343 KLRQEFSVYGVITSAKVMCDEKDTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVAL 402
Query: 381 AQRKEDRRARLQVCLLQ 397
AQRKE RR++L+ + Q
Sbjct: 403 AQRKEIRRSQLEAQMAQ 419
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/378 (58%), Positives = 293/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 167/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 166/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE L++LFS FG S KVMRD SG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/378 (58%), Positives = 293/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 167/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/378 (58%), Positives = 293/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 167/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/378 (58%), Positives = 293/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 167/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 25/308 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +EA +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ--REAGMR 390
Query: 303 FQGANLYI 310
AN +
Sbjct: 391 ALPANAIL 398
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/378 (58%), Positives = 293/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 167/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/383 (59%), Positives = 292/383 (76%), Gaps = 5/383 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL VT++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPSGPN---YPMASLYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + KPIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDAIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSC+VATD SKGYGFV F+ EE+A KAI K+NGMLLN+K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCRVATDEEAASKGYGFVHFETEEAANKAISKVNGMLLNNKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ + +K++ FTNVY+KN + ++ L F +YG ITSA VM D GK++ FGFV
Sbjct: 178 KEREKMLGDKARCFTNVYIKNFGDELDDDKLLVIFEKYGKITSAKVMTDDSGKNRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
+FE D A RAVE LNGK + YVG+AQKK+ER+ ELK FEQ +E +++QG NL
Sbjct: 238 SFEEPDSAERAVEELNGKDMGGRPLYVGRAQKKAERQSELKRHFEQLKQERLNRYQGVNL 297
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y+KNLDD++DDE+L++ F PFG+ITS KVM D +G S+G GFV FS+PEEA++A+ EMNG
Sbjct: 298 YVKNLDDALDDERLRKEFGPFGNITSAKVMTDANGRSKGFGFVCFSSPEEATKAVTEMNG 357
Query: 369 KMVVSKPLYVALAQRKEDRRARL 391
++VVSKPLYVALAQRKEDR+A L
Sbjct: 358 RIVVSKPLYVALAQRKEDRKAHL 380
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 163/289 (56%), Gaps = 19/289 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S RV D S GYG+V+F + A +A
Sbjct: 97 GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCRVATD-EEAASKGYGFVHFETEEAANKA 155
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN K + V R+ L + N++IKN +D L F +
Sbjct: 156 ISKVNGMLLNNKKVYVGKFIPRKEREKMLGDKARCFTNVYIKNFGDELDDDKLLVIFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S KV TD +G+++G+GFV F+ +SA++A+E+LNG + + +YVG +K ER +
Sbjct: 216 GKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYVGRAQKKAERQS 275
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + N+YVKNL ++ +E L+K FG +G ITSA VM D +G+SK
Sbjct: 276 ELKRHFEQLKQERLNRYQGVNLYVKNLDDALDDERLRKEFGPFGNITSAKVMTDANGRSK 335
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L Q+
Sbjct: 336 GFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRKEDRKAHLASQY 384
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 162/292 (55%), Gaps = 17/292 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L + FS G +LS +V D+ +S GY +V F
Sbjct: 2 NPSGPNYPMASLYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N + +K + + +RD + KS NV++KNL ++ + +
Sbjct: 62 PADAERALDTMNFDAIKNKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V D + SK +GFV+FE + A +A+ +NG ++K+ YVGK +
Sbjct: 118 TFSAFGNILSCRVATDEEAASKGYGFVHFETEEAANKAISKVNGMLLNNKKVYVGKFIPR 177
Query: 282 SERELELKHQFEQNMKEAADKFQG-ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
ERE K DK + N+YIKN D +DD+KL +F +G ITS KVM D
Sbjct: 178 KERE-----------KMLGDKARCFTNVYIKNFGDELDDDKLLVIFEKYGKITSAKVMTD 226
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG +RG GFV+F P+ A RA+ E+NGK + +PLYV AQ+K +R++ L+
Sbjct: 227 DSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYVGRAQKKAERQSELK 278
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 176/305 (57%), Gaps = 25/305 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +EA +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ--REAGMR 390
Query: 303 FQGAN 307
AN
Sbjct: 391 ALPAN 395
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/378 (58%), Positives = 293/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 172/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V R+ L R N++IKN + +D + L + F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 167/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQ 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELK 277
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG + K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELK 277
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG + K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/378 (58%), Positives = 293/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 172/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 166/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 GGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/378 (58%), Positives = 292/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 166/281 (59%), Gaps = 16/281 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE L++LFS FG S KVMRD SG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 237 SYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 277
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG +N K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEINGKVIFVGRAQKKVERQAELK 277
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+K L+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E + +L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L++ F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVMKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DD LK+LFS FG S KVMRD SG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELK 277
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLR 94
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/378 (58%), Positives = 292/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/378 (58%), Positives = 292/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 20 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 79
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 80 ADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 139
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 140 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 198
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E + +L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 199 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKH 258
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 259 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 318
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 319 DDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 377
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 378 KPLYVALAQRKEERKAHL 395
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 114 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 171
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D L + FS F
Sbjct: 172 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQF 231
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 232 GKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 291
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L++ F +G+ITSA VM + DG+S
Sbjct: 292 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE-DGRS 349
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 350 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 403
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 28 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 87
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 88 TMNFDVMKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 143
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 144 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 202
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DD LK+LFS FG S KVMRD SG S+G GF
Sbjct: 203 K--------AKEF--TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGF 252
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 253 VSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELK 294
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 295/378 (78%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFIQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 166/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LF FG S KVMRDP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E + +L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVMKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DD LK+LFS FG S KVMRD SG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELK 277
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLR 94
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/378 (58%), Positives = 293/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG ++ ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKRVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 167/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ++ +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKRVERQTELK 277
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/378 (60%), Positives = 293/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L+ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L D FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG + K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E + +L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L++ F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVMKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DD LK+LFS FG S KVMRD SG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELK 277
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLR 94
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/378 (58%), Positives = 293/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN + + V + R + GA N++IKN + +D + L + F F
Sbjct: 155 IKKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 167/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/374 (59%), Positives = 287/374 (76%), Gaps = 2/374 (0%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVGDL +V ++QLY+ FN G + S+RVCRD TRRSLGY YVNF +A RAL+ L
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
NF P+NGKP R+M+S RDPSLR+SG GNIFIKNL+K ID+KA++DTFSAFGNILSCK+A
Sbjct: 81 NFDPVNGKPCRIMWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFGNILSCKIAL 140
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SKFT 203
D NG SKGY FV F+ +E+A +AIEK+NGMLL+ K+V+VGHF+ ++ER +I +K+T
Sbjct: 141 DENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYT 200
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+YVKN + ++++ + F + G I S VVMRD GKS+ FGFV++E + A +AVE L
Sbjct: 201 NLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETL 260
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K+FD + YV +AQKKSER L+ Q+EQ +E +FQG NLY+KNLDD IDD KL+
Sbjct: 261 NEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLR 320
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
Q F+ FG+ITS KVM D GISRG GFV FS+PEEA++A+ EMNG++++SKPLYVALAQR
Sbjct: 321 QEFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQR 380
Query: 384 KEDRRARLQVCLLQ 397
KEDR+A+L +Q
Sbjct: 381 KEDRKAQLAAQYVQ 394
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 159/293 (54%), Gaps = 19/293 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + +YD F+ G ++S ++ D S GY +V+F + A RA
Sbjct: 105 GVGNIFIKNLEKDIDNKAIYDTFSAFGNILSCKIALD-ENGNSKGYAFVHFETQEAANRA 163
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSG-----AGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N L+GK + V + R + K G N+++KN I D F
Sbjct: 164 IEKVNGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQC 223
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I+SC V D +G+S+G+GFV ++ E+AQKA+E LN + +++YV +K ER
Sbjct: 224 GKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETLNEKEFDLRRMYVARAQKKSERSA 283
Query: 196 EINKS----------KF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ + +F N+YVKNL + + L++ F +GTITSA VM D G S+
Sbjct: 284 LLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLRQEFANFGTITSAKVMSDEKGISR 343
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K +R+ +L Q+ Q M
Sbjct: 344 GFGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQRKEDRKAQLAAQYVQRM 396
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/378 (58%), Positives = 292/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ FG+YG S VM D +GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK + K YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN + + V + R + GA N++IKN + +D + L + F +
Sbjct: 155 IDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD NG+SKG+GFV F+ E AQKA++ +NG +N K +YVG +K ER T
Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 167/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK++F +G S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G S+G GFV+F E+A +A+ +MNGK + K +YV AQ+K +R+ L+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/376 (60%), Positives = 293/376 (77%), Gaps = 5/376 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +++T++ L++ F+ G V+S+RVCRDL TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF P+ G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDPIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D GQSKGYGFV F+ EESA +IEK+NGMLLN+K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 QDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYVGRFISRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN E TEE L+ F ++G ITS VM DGKS+ FGFV FE +DA AV+
Sbjct: 183 TNVYVKNFGEDLTEEALRDMFEKFGPITSHRVMTK-DGKSRGFGFVAFEKPEDAEEAVQK 241
Query: 263 LNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK+ D K YVG+AQKK+ER++ELK +FEQ E ++ G NLY+KNLDD+IDDE+
Sbjct: 242 LNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDDER 301
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F+P+G+ITS KVM D G S+G GFV FS P+EA++A+ EMNG++V SKPLYVALA
Sbjct: 302 LRKEFAPYGTITSAKVMLD-EGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALA 360
Query: 382 QRKEDRRARLQVCLLQ 397
QRKE+R++ L +Q
Sbjct: 361 QRKEERKSHLASQYIQ 376
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 169/295 (57%), Gaps = 24/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V +D +S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQD-EKGQSKGYGFVHFETEESANTS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN K + V + R ++ G N+++KN + + +AL D F F
Sbjct: 147 IEKVNGMLLNEKKVYVGRFISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALRDMFEKF 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV-YVGHFLRKQERD 194
G I S +V T +G+S+G+GFV F+ E A++A++KLNG L+D +V YVG +K ER
Sbjct: 207 GPITSHRVMTK-DGKSRGFGFVAFEKPEDAEEAVQKLNGKELSDGKVLYVGRAQKKNERQ 265
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K +F N+YVKNL ++ +E L+K F YGTITSA VM D +G+
Sbjct: 266 MEL-KRRFEQLKMERLTRYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMLD-EGR 323
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F D+A +AV +NG+ K YV AQ+K ER+ L Q+ Q +
Sbjct: 324 SKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKSHLASQYIQRV 378
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/384 (57%), Positives = 293/384 (76%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ F +YG S VM D GKSK FGFV+FE
Sbjct: 182 EMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA RAV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD +DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARLQVCLLQ 397
KPLYVALAQRKE+R+A L +Q
Sbjct: 361 KPLYVALAQRKEERQAHLTSQYMQ 384
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 172/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS +V TD +G+SKG+GFV F+ E AQ+A++++NG +N KQVYVG +K ER T
Sbjct: 215 GPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTSQYMQRM 386
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 166/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE E M A +F N+YIKN + +DDEKLK++F +G S +VM D
Sbjct: 177 KEREAE--------MGARAKEF--TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A RA+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELK 277
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/378 (58%), Positives = 291/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDIKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRVVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 172/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDIKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRVVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDIKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/374 (60%), Positives = 292/374 (78%), Gaps = 4/374 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+ SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A
Sbjct: 29 HYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 88
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNIL
Sbjct: 89 RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 148
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN- 198
SCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 149 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 207
Query: 199 KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
K+K FTNVY+KN E +++L++ F ++G S VMRD GKSK FGFV++E +DA
Sbjct: 208 KAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDAN 267
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+I
Sbjct: 268 KAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 327
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLY
Sbjct: 328 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 386
Query: 378 VALAQRKEDRRARL 391
VALAQRKE+R+A L
Sbjct: 387 VALAQRKEERKAHL 400
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 33 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 92
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 93 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 148
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 149 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 207
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DD+ LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 208 K--------AKEF--TNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGF 257
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 258 VSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELK 299
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 119 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 176
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D L + FS F
Sbjct: 177 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQF 236
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 237 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 296
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 297 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 354
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 355 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 408
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/378 (58%), Positives = 291/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL + T++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 165/291 (56%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/384 (59%), Positives = 296/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQVCLLQ 397
KPLYVALAQRKE+R+A L +Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/378 (58%), Positives = 292/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD I+DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGINDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGINDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 167/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG+ S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/378 (58%), Positives = 291/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSL KSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 167/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD ++KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLHKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F P +A RAL MN ++ KP+ + +QR
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/378 (60%), Positives = 293/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+ VCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/378 (60%), Positives = 294/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 20 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 79
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 80 ADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 139
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 140 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 198
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E + +L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 199 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKH 258
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 259 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 318
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 319 DDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 377
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 378 KPLYVALAQRKEERKAHL 395
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 114 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 171
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D L + FS F
Sbjct: 172 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQF 231
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 232 GKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 291
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L++ F +G+ITSA VM + DG+S
Sbjct: 292 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE-DGRS 349
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 350 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 403
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 165/281 (58%), Gaps = 16/281 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 29 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 88
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 89 MNFDVMKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 144
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 145 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 203
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DD LK+LFS FG S KVMRD SG S+G GFV
Sbjct: 204 --------AKEF--TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFV 253
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 254 SYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELK 294
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/390 (58%), Positives = 301/390 (77%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G+++V+KPLYVALAQRKEDR+A L +Q
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 181/329 (55%), Gaps = 39/329 (11%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + + L + F +
Sbjct: 156 IDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+S
Sbjct: 276 QELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 335 KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL------ 388
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
AN+ + +++ Q+F P G+
Sbjct: 389 ---ANMRM---------QQMGQIFQPGGA 405
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/378 (58%), Positives = 291/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSL KSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 167/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD ++KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLHKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F P +A RAL MN ++ KP+ + +QR
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/390 (58%), Positives = 301/390 (77%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G+++V+KPLYVALAQRKEDR+A L +Q
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 181/329 (55%), Gaps = 39/329 (11%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + + L + F +
Sbjct: 156 IDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+S
Sbjct: 276 QELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 335 KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL------ 388
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
AN+ + +++ Q+F P G+
Sbjct: 389 ---ANMRM---------QQMGQIFQPGGA 405
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/390 (58%), Positives = 301/390 (77%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G+++V+KPLYVALAQRKEDR+A L +Q
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 181/329 (55%), Gaps = 39/329 (11%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + + L + F +
Sbjct: 156 IDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+S
Sbjct: 276 QELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 335 KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL------ 388
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
AN+ + +++ Q+F P G+
Sbjct: 389 ---ANMRM---------QQMGQIFQPGGA 405
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/390 (58%), Positives = 301/390 (77%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G+++V+KPLYVALAQRKEDR+A L +Q
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 168/294 (57%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + + L + F +
Sbjct: 156 IDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+S
Sbjct: 276 QELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 335 KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL 388
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/390 (58%), Positives = 300/390 (76%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL A++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+K+NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E ++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSI+DE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSINDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G+++V+KPLYVALAQRKEDR+A L +Q
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 181/330 (54%), Gaps = 41/330 (12%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + + L + F +
Sbjct: 156 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQ 275
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL +S +E L++ F +GTITSA VM + DG+
Sbjct: 276 QEL-KRKFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMME-DGR 333
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
SK FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 334 SKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL----- 388
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
AN+ + +++ Q+F P G+
Sbjct: 389 ----ANMRM---------QQMGQMFPPGGA 405
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/390 (58%), Positives = 300/390 (76%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL A++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+K+NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E ++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSI+DE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSINDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G+++V+KPLYVALAQRKEDR+A L +Q
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 181/330 (54%), Gaps = 41/330 (12%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + + L + F +
Sbjct: 156 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQ 275
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL +S +E L++ F +GTITSA VM + DG+
Sbjct: 276 QEL-KRKFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMME-DGR 333
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
SK FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 334 SKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL----- 388
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
AN+ + +++ Q+F P G+
Sbjct: 389 ----ANMRM---------QQMGQMFPPGGA 405
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/390 (58%), Positives = 300/390 (76%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L+ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G+++V+KPLYVALAQRKEDR+A L +Q
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 181/329 (55%), Gaps = 39/329 (11%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + + L D F +
Sbjct: 156 IDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+S
Sbjct: 276 QELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 335 KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL------ 388
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
AN+ + +++ Q+F P G+
Sbjct: 389 ---ANMRM---------QQMGQIFQPGGA 405
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 231/397 (58%), Positives = 300/397 (75%), Gaps = 13/397 (3%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L+D F+ G V+S+RVCRDL TRRSLGY YV
Sbjct: 1 MNQGAPN---YPMASLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLD++ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDLIRGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D NG SKGYGFV F+ EE+A K+IEK+NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E +EE L+ F ++G ITS VM DGKSK FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ + A AV+ALNGK+ + K YVG+AQKK+ER+ ELK +FE E +++QG N
Sbjct: 238 AFESPEAAETAVDALNGKELVEGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI-------SRGSGFVAFSTPEEAS 360
LY+KNLDD+IDDE+L++ F+PFG+ITS KVM + + S+G GFV FS+PEEA+
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEAT 357
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
+A+ EMNG++V SKPLYVALAQRKEDR+A L +Q
Sbjct: 358 KAVTEMNGRIVGSKPLYVALAQRKEDRKAHLTSQYMQ 394
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 169/301 (56%), Gaps = 27/301 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S +V +D S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQD-ENGTSKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R ++ G N+++KN + + + L + F F
Sbjct: 156 IEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLSEEQLRNMFEKF 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV F++ E+A+ A++ LNG L+ K +YVG +K ER
Sbjct: 216 GKITSYKVMSKDDGKSKGFGFVAFESPEAAETAVDALNGKELVEGKPLYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD--- 239
E+ N+ + N+YVKNL ++ +E L+K F +GTITSA VM + +
Sbjct: 276 QELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMIEENKTE 335
Query: 240 ----GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
+SK FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q
Sbjct: 336 SFITTRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLTSQYMQR 395
Query: 296 M 296
M
Sbjct: 396 M 396
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/390 (58%), Positives = 300/390 (76%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L+ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G+++V+KPLYVALAQRKEDR+A L +Q
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 181/329 (55%), Gaps = 39/329 (11%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + + L D F +
Sbjct: 156 IDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+S
Sbjct: 276 QELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 335 KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL------ 388
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
AN+ + +++ Q+F P G+
Sbjct: 389 ---ANMRM---------QQMGQIFQPGGA 405
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/376 (59%), Positives = 293/376 (77%), Gaps = 4/376 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + +E L++ FG+YG S VM D GKSK FGFV+FE ++
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEE 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + K +VG+AQKK+ER+ ELK +FEQ +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 363 LYVALAQRKEERKAHL 378
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/282 (37%), Positives = 166/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L I L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN D +DDE+LK+LF +G S KVM DP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F EEA++A+ EMNGK + K L+V AQ+K +R+A L+
Sbjct: 236 VSFEKHEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELK 277
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 168/293 (57%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + F +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD G+SKG+GFV F+ E A KA+E++NG +N K ++VG +K ER
Sbjct: 215 GKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQKKAERQA 274
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ + S++ N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 275 ELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L I + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAASSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/378 (58%), Positives = 291/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E ++ L+ F +YG S VM D +GKS+ FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA RAV+ +NGK+ + K YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM D G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMD-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D L D FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GN +S +V TD NG+S+G+GFV F+ E AQ+A++++NG +N K +YVG +K ER T
Sbjct: 215 GNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM DG G+S
Sbjct: 275 EL-KRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 169/291 (58%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DD+KLK +FS +G+ S +VM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G SRG GFV+F E+A RA+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELK 277
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G+I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/378 (57%), Positives = 291/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ FG+YG S VM D GKS+ FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK + K +VG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ F+PFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN + + V + R + GA N++IKN + +D + L + F +
Sbjct: 155 IDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+S+G+GFV F+ E AQKA++ +NG LN K ++VG +K ER T
Sbjct: 215 GAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +G+ITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 166/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+ F +G+ S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G SRG GFV+F E+A +A+ +MNGK + K ++V AQ+K +R+ L+
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/390 (58%), Positives = 298/390 (76%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL ++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+K+NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD+IDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G++V SKPLYVALAQRKEDR+A L +Q
Sbjct: 357 GRIVGSKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 170/294 (57%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGA-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + + L + F +
Sbjct: 156 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+S+G+GFV F++ ++A++A+ +LNG +++ K +YVG +K ER
Sbjct: 216 GTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL ++ +E L+K F +GTITSA VM + +G+S
Sbjct: 276 QELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 335 KGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRM 388
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/378 (57%), Positives = 291/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ FG YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD +DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFGNY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS +V TD G+SKG+GFV F+ E AQKA++ +NG LN +QVYVG +K ER
Sbjct: 215 GPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQN 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 165/291 (56%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPLRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDEKLK+LF +G S +VM D
Sbjct: 177 KEREAEL----------GARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G S+G GFV+F E+A +A+ +MNGK + + +YV AQ+K +R+ L+
Sbjct: 227 TGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +PL + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPLRIMWSQRDPSLR 94
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/378 (57%), Positives = 292/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+++ RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 RDSERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 166/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ D + +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PRDSERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S ++ RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--KITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+ P ++ RAL MN ++ KP+ + +QR R
Sbjct: 59 YQQPRDSERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/378 (58%), Positives = 292/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/377 (59%), Positives = 291/377 (77%), Gaps = 4/377 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
A+ + SLYVGDL +VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 TASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 IN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ K+K FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+FE +
Sbjct: 183 LGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLD
Sbjct: 243 DANQAVEDMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SK
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
Query: 375 PLYVALAQRKEDRRARL 391
PLYVALAQRKE+R+A L
Sbjct: 362 PLYVALAQRKEERKAHL 378
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN D +DDE+LK+LFS +G S KVM DPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F E+A++A+ +MNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSFEKHEDANQAVEDMNGKDINGKMVFVGRAQKKVERQAELK 277
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A +A+E +NG +N K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPSGKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M A + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MSTTASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/376 (60%), Positives = 292/376 (77%), Gaps = 4/376 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDKAID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D NG SKGYGFV F+ EE+A K+IEK+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 QDENGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN E ++E L+ F +YG ITS VM DG S+ FGFV FE+ D A RA
Sbjct: 183 TNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACLE 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E ++QG NLY+KNLDD+IDDE+
Sbjct: 243 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F+PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALA
Sbjct: 303 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 361
Query: 382 QRKEDRRARLQVCLLQ 397
QRKEDR+A L +Q
Sbjct: 362 QRKEDRKAHLTSQYMQ 377
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 166/295 (56%), Gaps = 23/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V +D S GYG+V+F + A ++
Sbjct: 88 GVGNVFIKNLDKAIDNKAMYDTFSAFGNILSCKVAQD-ENGASKGYGFVHFETEEAANKS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R ++ G N+++KN + + L D F +
Sbjct: 147 IEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLRDMFEKY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRKQERD 194
G I S KV +G S+G+GFV F++ ++A++A +LNG L+ K +YVG +K ER
Sbjct: 207 GRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACLELNGKELVEGKPLYVGRAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ +E L+K F +GTITSA VM + DG+
Sbjct: 267 KEL-KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGR 324
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 325 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQRM 379
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEASRA 362
A+LY+ +L I + L + FSP G + S +V RD I+R G +V F P +A RA
Sbjct: 2 ASLYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRD--MITRRSLGYAYVNFQQPSDAERA 59
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
L MN M+ +P+ + +QR R
Sbjct: 60 LDTMNFDMIKGRPIRIMWSQRDPSLR 85
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/390 (58%), Positives = 296/390 (75%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGPPN---YPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RALE +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALEGMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D G SKGYGFV F+ EE+A K+IEK+NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E ++E L++ F +YG ITS VM DG S+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A RA LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E ++QG N
Sbjct: 238 AFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD+IDDE+L++ F+PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G++V +KPLYVALAQRKEDR+A L +Q
Sbjct: 357 GRIVGTKPLYVALAQRKEDRKAHLTSQYMQ 386
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 167/295 (56%), Gaps = 23/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V +D T S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R ++ G N+++KN + + L + F +
Sbjct: 156 IEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRKQERD 194
G I S KV +G S+G+GFV F++ ++A++A +LNG L+ K +YVG +K ER
Sbjct: 216 GRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQ 275
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ +E L+K F +GTITSA VM + DG+
Sbjct: 276 KEL-KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGR 333
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 334 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQRM 388
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/378 (57%), Positives = 290/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAASYPMASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN + EE L+ F +YG S VM D GKS+ FGFV+FE
Sbjct: 182 ELGARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMLE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 172/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L D F+ +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGDDMDEEKLRDVFNKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GN +S +V TD +G+S+G+GFV F+ E AQKA++++NG +N K +YVG +K ER
Sbjct: 215 GNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 168/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAASYPMASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN D +D+EKL+ +F+ +G+ S +VM D
Sbjct: 177 KEREAEL----------GARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SRG GFV+F E+A +A+ EMNGK + KP+YV AQ+K +R+A L+
Sbjct: 227 SGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELK 277
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G+I S +V RD I+R G +V
Sbjct: 1 MNPSAASYPMASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/378 (57%), Positives = 291/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD +DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS +V TD +G+SKG+GFV F+ E AQKA++++NG LN +QVYVG +K ER
Sbjct: 215 GPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYVGRAQKKGERQN 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 166/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPLRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDEKLK+LFS +G S +VM D
Sbjct: 177 KEREAEL----------GARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + + +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYVGRAQKKGERQNELK 277
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +PL + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPLRIMWSQRDPSLR 94
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/378 (58%), Positives = 292/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/390 (58%), Positives = 296/390 (75%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGPPN---YPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RALE +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALEGMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TF+AFGNILSCKVA D G SKGYGFV F+ EE+A K+IEK+NGMLLN K+VYVG F+ +
Sbjct: 118 TFTAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E ++E L++ F +YG ITS VM DG S+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A RA LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E ++QG N
Sbjct: 238 AFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD+IDDE+L++ F+PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G++V +KPLYVALAQRKEDR+A L +Q
Sbjct: 357 GRIVGTKPLYVALAQRKEDRKAHLTSQYMQ 386
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 166/295 (56%), Gaps = 23/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F G ++S +V +D T S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKTIDNKAMYDTFTAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R ++ G N+++KN + + L + F +
Sbjct: 156 IEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRKQERD 194
G I S KV +G S+G+GFV F++ ++A++A +LNG L+ K +YVG +K ER
Sbjct: 216 GRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQ 275
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ +E L+K F +GTITSA VM + DG+
Sbjct: 276 KEL-KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGR 333
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 334 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQRM 388
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/378 (59%), Positives = 291/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A + + SLYVGDL +VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAGSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAHL 378
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 168/293 (57%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I++ + N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 275 ELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN D +DDE+LK+LFS +G S KVM DP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 277
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M A + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MDAAGSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/376 (59%), Positives = 291/376 (77%), Gaps = 4/376 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL +VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGAITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 363 LYVALAQRKEERKAHL 378
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 167/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGAITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN D +DDE+LK+LFS +G S KVM DP+G S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/378 (58%), Positives = 292/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/376 (59%), Positives = 292/376 (77%), Gaps = 4/376 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+P+EA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 363 LYVALAQRKEERKAHL 378
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + D+A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 164/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+YIKN D +DDE+LK+LFS +G S KVM D SG S+G GF
Sbjct: 184 --------GAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 277
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/378 (57%), Positives = 291/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD +DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS +V TD G+SKG+GFV F+ E AQKA++ +NG LN +QVYVG +K ER
Sbjct: 215 GPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQN 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 165/291 (56%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPLRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDEKLK+LFS +G S +VM D
Sbjct: 177 KEREAEL----------GARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G S+G GFV+F E+A +A+ +MNGK + + +YV AQ+K +R+ L+
Sbjct: 227 GGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELK 277
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +PL + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPLRIMWSQRDPSLR 94
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/370 (61%), Positives = 291/370 (78%), Gaps = 4/370 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK- 201
D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ K+K
Sbjct: 122 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 180
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVY+KN E +++L++ F ++G S VMRD GKSK FGFV++E +DA +AVE
Sbjct: 181 FTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 240
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEK
Sbjct: 241 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 300
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALA
Sbjct: 301 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 359
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 360 QRKEERKAHL 369
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/281 (35%), Positives = 167/281 (59%), Gaps = 16/281 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 63 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 119 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 177
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DD+ LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 178 --------AKEF--TNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 227
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 228 SYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELK 268
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 88 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 145
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D L + FS F
Sbjct: 146 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQF 205
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 206 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 265
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 266 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 323
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 324 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 377
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/378 (57%), Positives = 292/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN + +E L++ F +YG S VM D +GKS+ FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GN +S +V TD NG+S+G+GFV F+ E AQKA++++NG +N K +YVG +K ER T
Sbjct: 215 GNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 170/291 (58%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGQPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN D +DDEKL++LFS +G+ S +VM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G SRG GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 NGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELK 277
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G+I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGQPVRIMWSQRDPSLR 94
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/390 (57%), Positives = 300/390 (76%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N GG N + SLYVGDL ++VT++ L++ F+ G V+S+RVCRD+ T+RSLGY YV
Sbjct: 1 MNPGGPN---YPMASLYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +N+ PL GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNYDPLKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFS FGNILSCKVA D +G SKGYGFV F+ EE+A K+I+K+NGMLLN K+V+VG F+ +
Sbjct: 118 TFSTFGNILSCKVAQDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVFVGKFIPR 177
Query: 191 QERDTEINK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ + +FTNVYVKN E +++ L++ F +YG ITS VM DGKSK FGFV
Sbjct: 178 KEREKELGEKAKRFTNVYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ + A +AV +LNGK+ + K +VG+AQKK+ER+ ELK +FEQ E ++QG N
Sbjct: 238 AFEDPEAAEKAVASLNGKEIVEGKPLFVGRAQKKAERQQELKRKFEQLKMERLSRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KN+DD+IDDE+L++ F+PFG+ITS KVM + G S+G GFV FS+ EEA++A+ EMN
Sbjct: 298 LYVKNIDDNIDDERLRKEFTPFGTITSAKVMLE-DGRSKGFGFVCFSSAEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G++V SKPLYVALAQRKEDR+A L +Q
Sbjct: 357 GRIVGSKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 169/295 (57%), Gaps = 23/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKSIDNKAMYDTFSTFGNILSCKVAQDESGT-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + L + F +
Sbjct: 156 IDKVNGMLLNGKRVFVGKFIPRKEREKELGEKAKRFTNVYVKNFGEDFSDDLLREMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV F++ E+A+KA+ LNG ++ K ++VG +K ER
Sbjct: 216 GRITSHKVMSKDDGKSKGFGFVAFEDPEAAEKAVASLNGKEIVEGKPLFVGRAQKKAERQ 275
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKN+ ++ +E L+K F +GTITSA VM + DG+
Sbjct: 276 QEL-KRKFEQLKMERLSRYQGVNLYVKNIDDNIDDERLRKEFTPFGTITSAKVMLE-DGR 333
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F ++++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 334 SKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQKM 388
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/378 (57%), Positives = 292/378 (77%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN + +E L++ F +YG S VM D +GKS+ FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GN +S +V TD NG+S+G+GFV F+ E AQKA++++NG +N K +YVG +K ER T
Sbjct: 215 GNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 170/291 (58%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGQPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN D +DDEKL++LFS +G+ S +VM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G SRG GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 NGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELK 277
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G+I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGQPVRIMWSQRDPSLR 94
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 217/378 (57%), Positives = 291/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN + +E L++ FG+YG S VM D +GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK + K +VG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ F PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN + + V + R + GA N++IKN ++ + L + F +
Sbjct: 155 IDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD NG+SKG+GFV F+ E AQKA++++NG +N K ++VG +K ER T
Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 168/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN D ++DE+LK++F +G S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G S+G GFV+F E+A +A+ EMNGK + K ++V AQ+K +R+ L+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELK 277
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 217/378 (57%), Positives = 291/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN + +E L++ FG+YG S VM D +GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK + K +VG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ F PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN + + V + R + GA N++IKN ++ + L + F +
Sbjct: 155 IDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD NG+SKG+GFV F+ E AQKA++++NG +N K ++VG +K ER T
Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 168/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN D ++DE+LK++F +G S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G S+G GFV+F E+A +A+ EMNGK + K ++V AQ+K +R+ L+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELK 277
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 217/382 (56%), Positives = 292/382 (76%), Gaps = 4/382 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + SLYVGDL +VT++ LY+ F+ G +VS+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 APSYPIASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG S+GYGFV F+ ++A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNVY+KN E +E L++ F ++G TS VM D G + FGFV+FEN +D
Sbjct: 184 GARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+ +NGK+ + + +VG+AQKK ER++ELK +FEQ ++ ++QG NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
IDDE+L++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 376 LYVALAQRKEDRRARLQVCLLQ 397
LYVALAQRKE+R+A L +Q
Sbjct: 363 LYVALAQRKEERQAHLITQYMQ 384
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M A + A+LY+ +L + + L + FSP G+I S +V RD I+R G +V
Sbjct: 1 MNPGAPSYPIASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGQPVRIMWSQRDPSLR 94
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/373 (60%), Positives = 290/373 (77%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A R
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-K 199
CKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+ K
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAK 186
Query: 200 SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+K FTNVY+KN E +E L+++F +YG S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+ID
Sbjct: 247 AVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYV
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERKAHL 378
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 170/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L +TFS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A KA++ +NG +N K ++VG +K ER
Sbjct: 215 GKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQA 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I++ + N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+SK
Sbjct: 275 ELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 164/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAEL-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+YIKN + +DDE+LK+ FS +G S KVM DPSG S+G GF
Sbjct: 184 --------GAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F E+A++A+ +MNGK V K ++V AQ+K +R+A L+
Sbjct: 236 VSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELK 277
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M A + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MHTATSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/378 (60%), Positives = 292/378 (77%), Gaps = 7/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F + S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSK---TLSVKVMRDPSGKSKGFGFVSYEKH 238
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 239 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 298
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 299 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 357
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 358 KPLYVALAQRKEERKAHL 375
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 19/282 (6%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDE LK+LFS S KVMRDPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGEEVDDESLKELFS---KTLSVKVMRDPSGKSKGFGF 232
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 233 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 274
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 169/294 (57%), Gaps = 26/294 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-- 212
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 213 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 271
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 272 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 329
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 383
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 212/372 (56%), Positives = 290/372 (77%), Gaps = 2/372 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L++ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 55 SASLYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 114
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + + R+M+S RDP+LRK+G GNIFIKNLD+ IDHKALHDTF+AFGN+LSCK
Sbjct: 115 EQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDTFAAFGNVLSCK 174
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD NG+S+G+GFV +D E+A AI+ +NGMLLNDK+V+VGH++ K+ER I+ KS
Sbjct: 175 VATDENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFVGHYISKKERQAHIDEQKS 234
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTN+YVKNL T+++ F ++G +TSAVV +D +GKSK FGFVNF++ + A AV
Sbjct: 235 QFTNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAV 294
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+AL+ + + K+ +V +AQKK+ERE EL+ +EQ E K+QGANLYIKNL+D +DD+
Sbjct: 295 DALHDTELNGKKLFVTRAQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDD 354
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+ F PFG+ITSCK+MRD G S+G GFV +S+PEEA++A+ EMN KM+ SKPLYV+
Sbjct: 355 KLRAEFEPFGTITSCKIMRDEKGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSP 414
Query: 381 AQRKEDRRARLQ 392
AQR+E RR +L+
Sbjct: 415 AQRREVRRQQLE 426
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 158/291 (54%), Gaps = 23/291 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + L+D F G V+S +V D RS G+G+V++ A+ A A
Sbjct: 142 GQGNIFIKNLDEQIDHKALHDTFAAFGNVLSCKVATD-ENGRSRGFGFVHYDTAEAADTA 200
Query: 82 LEMLNFTPLNGKPIRVMY--------SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +N LN K + V + +H D +KS N+++KNLD + +D F+
Sbjct: 201 IKAVNGMLLNDKKVFVGHYISKKERQAHID--EQKSQFTNLYVKNLDTEVTDDEFNDMFA 258
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FG + S V D G+SKG+GFV F + ESAQ A++ L+ LN K+++V +K ER
Sbjct: 259 KFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVDALHDTELNGKKLFVTRAQKKAER 318
Query: 194 DTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+ E+ KS + N+Y+KNL + ++ L+ F +GTITS +MRD G
Sbjct: 319 EEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRDEKGT 378
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
SK FGFV + + ++A +AV +N K K YV AQ++ R +L+ Q
Sbjct: 379 SKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSPAQRREVRRQQLESQI 429
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+++ +LY+ +LE ++ D +L F G + S ++ RD S G+G+V +S+ +EA
Sbjct: 335 SKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRD-EKGTSKGFGFVCYSSPEEA 393
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N L KP+ V + R
Sbjct: 394 TKAVAEMNNKMLGSKPLYVSPAQR 417
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 291/382 (76%), Gaps = 8/382 (2%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG----NIFIKNLDKAIDHKALHDT 131
+A RALE LNF + G+P+R+M+S RDPSLRKSG G NIFIKNLDK+ID+KAL+DT
Sbjct: 63 VDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGGGVGNIFIKNLDKSIDNKALYDT 122
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++
Sbjct: 123 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 181
Query: 192 ERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
ER+ E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+
Sbjct: 182 EREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 241
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY
Sbjct: 242 FERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLY 301
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG+
Sbjct: 302 VKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGR 360
Query: 370 MVVSKPLYVALAQRKEDRRARL 391
+V +KPLYVALAQRKE+R+A L
Sbjct: 361 IVATKPLYVALAQRKEERQAHL 382
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 101 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 158
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 159 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 218
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 219 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 278
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 279 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 336
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 337 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 390
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 166/295 (56%), Gaps = 20/295 (6%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ D + +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT----NVYVKNLSESTTEE 217
A++A+E LN ++ + V + +RD + KS N+++KNL +S +
Sbjct: 62 PVDAKRALETLNFDVIKGRPVRIMW----SQRDPSLRKSGVGGGVGNIFIKNLDKSIDNK 117
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L +F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+
Sbjct: 118 ALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 176
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
+ + ERE EL + A +F N+YIKN + +DDE+LK LF FG S KV
Sbjct: 177 FKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 226
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
M D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 281
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S ++ RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--KITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+ P +A RAL +N ++ +P+ + +QR R
Sbjct: 59 YQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 94
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/378 (58%), Positives = 289/378 (76%), Gaps = 7/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ F G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERH 238
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 239 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 298
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 299 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 357
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 358 KPLYVALAQRKEERQAHL 375
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 172/294 (58%), Gaps = 26/294 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF--- 211
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 212 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 271
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 272 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 329
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 330 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 383
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 165/291 (56%), Gaps = 19/291 (6%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF P S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDE 223
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 274
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/378 (58%), Positives = 289/378 (76%), Gaps = 7/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ F G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERH 238
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 239 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 298
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 299 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 357
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 358 KPLYVALAQRKEERQAHL 375
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 172/294 (58%), Gaps = 26/294 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF--- 211
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 212 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 271
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 272 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 329
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 330 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 383
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 165/291 (56%), Gaps = 19/291 (6%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF P S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDE 223
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 274
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/378 (58%), Positives = 289/378 (76%), Gaps = 7/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ F G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERH 238
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 239 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 298
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 299 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 357
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 358 KPLYVALAQRKEERQAHL 375
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 172/294 (58%), Gaps = 26/294 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF--- 211
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 212 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 271
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 272 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 329
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 330 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 383
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 165/291 (56%), Gaps = 19/291 (6%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF P S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDE 223
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 274
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/373 (59%), Positives = 290/373 (77%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNFS +A R
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-K 199
CKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+ K
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 200 SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+K FTNVY+KN + +E L++ F +YG S VM D GKS+ FGFV++E +DA +
Sbjct: 187 AKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AVE +NG + + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+ID
Sbjct: 247 AVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYV
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERKAHL 378
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + F +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+S+G+GFV ++ E A KA+E++NG LN K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 165/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L I L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVVKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN D +DDE+LK++F +G S KVM DPSG SRG GF
Sbjct: 186 K--------AKEF--TNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNG + K ++V AQ+K +R+A L+
Sbjct: 236 VSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELK 277
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M A + A+LY+ +L I + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
FS P +A RAL MN +V KP+ + +QR R
Sbjct: 59 FSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLR 94
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 213/376 (56%), Positives = 291/376 (77%), Gaps = 3/376 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+LE NV ++ L+++FN +G V S+RVCRD TRRSLGY YVNF NA+++ RALE
Sbjct: 80 TSLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALE 139
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TP+ G+P R+M+S RDP R++G GNIFIKNLD+AID+KALHDTF+AFG ILSCKV
Sbjct: 140 QLNYTPIRGRPCRIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSCKV 199
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
A++ +G S GYGFV +++ ++A+ AI+ +NGMLLNDK+VYVGH + K++R +I +++
Sbjct: 200 ASNEHG-SLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKIEEARAH 258
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
+TNVYVKNL + T+E+ +K F +YG ITSA + D +GKS+ FGFVNF + AA+AVE
Sbjct: 259 YTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAKAVE 318
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN +F ++ ++G+AQKKSERE EL+ +E E K+QG NLYIKNL + DDE+
Sbjct: 319 ELNDTEFHGQKLFLGRAQKKSEREEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDER 378
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F+PFG+ TS KVMR P+G SRG GFV +S PEEA++A+ EMNGKM+ ++PLYVALA
Sbjct: 379 LQEEFAPFGTTTSAKVMRTPTGASRGFGFVCYSAPEEANKAVAEMNGKMIENRPLYVALA 438
Query: 382 QRKEDRRARLQVCLLQ 397
QRK+ R +L ++Q
Sbjct: 439 QRKDVRHQQLAAQMMQ 454
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 163/292 (55%), Gaps = 20/292 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G+++S +V + SLGYG+V++ + A A
Sbjct: 166 GQGNIFIKNLDEAIDNKALHDTFAAFGKILSCKVASN--EHGSLGYGFVHYESNDAAEAA 223
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + S +D + ++ N+++KNLD A+ + F +
Sbjct: 224 IKHVNGMLLNDKKVYVGHHISKKDRQAKIEEARAHYTNVYVKNLDPAVTQEEFEKLFEKY 283
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S +ATD G+S+G+GFV F E A KA+E+LN + +++++G +K ER+
Sbjct: 284 GKITSAAIATDQEGKSRGFGFVNFSEHEQAAKAVEELNDTEFHGQKLFLGRAQKKSEREE 343
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ + SK+ N+Y+KNL E +E LQ+ F +GT TSA VMR G S+
Sbjct: 344 ELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDERLQEEFAPFGTTTSAKVMRTPTGASR 403
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
FGFV + ++A +AV +NGK +++ YV AQ+K R +L Q Q+
Sbjct: 404 GFGFVCYSAPEEANKAVAEMNGKMIENRPLYVALAQRKDVRHQQLAAQMMQH 455
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 211/382 (55%), Positives = 293/382 (76%), Gaps = 2/382 (0%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
AN + SLYVG+L+ VT+S L+++FN +G V S+RVCRD TRRSLGY YVN+ NA +
Sbjct: 36 ANTATSASLYVGELDPTVTESMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAAD 95
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
RALE LN++ + +P R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN
Sbjct: 96 GERALEQLNYSSIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGN 155
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
+LSCKVATD +G SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVG + ++ER ++I
Sbjct: 156 VLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVYVGPHISRKERQSKI 215
Query: 198 N--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+ ++ FTN+YVKN+ T+E+ + F +YG + S+++ RD G++ FGFVNFE ++
Sbjct: 216 DEMRAHFTNLYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEE 275
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+AL+ F ++ YV +AQKK+ERE EL+ Q++Q +E +K+QG NLYIKNL+D
Sbjct: 276 AQKAVDALHESDFHGRKLYVARAQKKAEREAELRKQYDQARQERMNKYQGVNLYIKNLED 335
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+DDEKL+ F PFG+ITSC+VMRD G S+G GFV +S P+EA++A+ EMN KM+ SKP
Sbjct: 336 DVDDEKLRAEFEPFGTITSCRVMRDERGKSKGFGFVCYSAPDEATKAVAEMNNKMIGSKP 395
Query: 376 LYVALAQRKEDRRARLQVCLLQ 397
LYV+LAQRKE RR +L+ + Q
Sbjct: 396 LYVSLAQRKEIRRQQLESQIAQ 417
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 226/376 (60%), Positives = 289/376 (76%), Gaps = 4/376 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL DTFSAFGNILSCKVA
Sbjct: 63 MNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D G SKGYGFV F+ EE+A K+IEK+NGMLLN K VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN E ++E L+ F +YG ITS VM DG S+ FGFV FE+ D A RA
Sbjct: 183 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E ++QG NLY+KNLDD+IDDE+
Sbjct: 243 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F+PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALA
Sbjct: 303 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 361
Query: 382 QRKEDRRARLQVCLLQ 397
QRKEDR+A L +Q
Sbjct: 362 QRKEDRKAHLTSQYMQ 377
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 168/295 (56%), Gaps = 23/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F+ G ++S +V +D T S GYG+V+F + A ++
Sbjct: 88 GVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R ++ G N+++KN + + L D F +
Sbjct: 147 IEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRKQERD 194
G I S KV +G S+G+GFV F++ ++A++A +LNG L+ K +YVG +K ER
Sbjct: 207 GRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ +E L+K F +GTITSA VM + DG+
Sbjct: 267 KEL-KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGR 324
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 325 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQRM 379
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/376 (59%), Positives = 291/376 (77%), Gaps = 4/376 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + + L++ F +YG S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+P+EA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 363 LYVALAQRKEERKAHL 378
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + D+A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 164/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+YIKN D +DD +LK+LFS +G S KVM DPSG S+G GF
Sbjct: 184 --------GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/376 (59%), Positives = 291/376 (77%), Gaps = 4/376 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + + L++ F +YG S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+P+EA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 363 LYVALAQRKEERKAHL 378
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + D+A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 164/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+YIKN D +DD +LK+LFS +G S KVM DPSG S+G GF
Sbjct: 184 --------GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/378 (57%), Positives = 289/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + T SLYVGDL V+++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPTASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RALE +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL DTFSAF
Sbjct: 63 ADAERALETMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G SKGYGFV F+ ++A++AI+K+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E + L++ FG++G S VM D G SK FGFVNFE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTDESGTSKGFGFVNFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G ++G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRNKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLY+ALAQRKE+R+A L
Sbjct: 361 KPLYIALAQRKEERQAHL 378
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F+ G ++S +V D S GYG+V+F A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALFDTFSAFGNILSCKVVCD--EHGSKGYGFVHFETRDAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN + + V + R + GA N++IKN + +D L F F
Sbjct: 155 IDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDLRLKRLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G SKG+GFV F+ E AQKA+E++NG LN K++YVG +K ER T
Sbjct: 215 GPSLSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G++
Sbjct: 275 EL-KRKFEQLKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRN 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K Y+ AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYIALAQRKEERQAHLTNQYMQRM 386
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 163/290 (56%), Gaps = 16/290 (5%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNE 162
PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 3 PSAPSYPTASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A++A+E +N ++ K V + +RD + KS N+++KNL +S + L +
Sbjct: 63 ADAERALETMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALFDT 118
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V+ D G SK +GFV+FE D A RA++ +NG +D++ +VG+ + +
Sbjct: 119 FSAFGNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
ERE EL + A +F N+YIKN + +DD +LK+LF FG S KVM D S
Sbjct: 178 EREAELGAR--------AKEF--TNVYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTDES 227
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G S+G GFV F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 228 GTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELK 277
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MHPSAPSYPTASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALETMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/373 (59%), Positives = 283/373 (75%), Gaps = 6/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ + SLYVGDL VT++ L+++F +G V S+RVCRD TRRSLGY YVNF N +A R
Sbjct: 7 YQSASLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAER 66
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPS+RKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 67 ALDTLNYTLIKGRPCRIMWSHRDPSIRKSGQGNIFIKNLDKSIDNKALYDTFSAFGNILS 126
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKV TD G SKGYGFV ++ E+A AI K+NG +LN K VYVG F+ ++ER +
Sbjct: 127 CKVVTDGKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYVGRFIARKERTPGSDPE 186
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+Y+KNL E+ TEEDL++ FG +GT+ SAV+M+D + F FVNFE+ + A RA
Sbjct: 187 KFTNIYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRAT 246
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNG+K DKE YVG+AQKKSERE L+ E E A K+QG NLYIKNLDD+++DE
Sbjct: 247 EELNGRKLGDKEVYVGRAQKKSERESFLRKLRE----ERAQKYQGINLYIKNLDDTVNDE 302
Query: 321 KLKQLFS--PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
+L +LFS PFG ITSCKVM D G SRG GFV ++ PE+AS+A+ EMNGKMV +KP+YV
Sbjct: 303 ELHKLFSALPFGQITSCKVMSDDKGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKPIYV 362
Query: 379 ALAQRKEDRRARL 391
ALA+RK+ R A+L
Sbjct: 363 ALAERKDVRSAKL 375
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 150/283 (53%), Gaps = 17/283 (6%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ +L+ + L + F A G + S +V D + +S GY +V F N A++A+
Sbjct: 9 SASLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAERAL 68
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
+ LN L+ + + RD I KS N+++KNL +S + L +F +G I
Sbjct: 69 DTLNYTLIKGRPCRI----MWSHRDPSIRKSGQGNIFIKNLDKSIDNKALYDTFSAFGNI 124
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S V+ DG G SK +GFV++E S+ A A+ +NGK + K YVG+ + ER
Sbjct: 125 LSCKVVTDGKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYVGRFIARKER----- 179
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+D + N+YIKNL ++ +E LK+ F FG++ S +M+DP I R
Sbjct: 180 -------TPGSDPEKFTNIYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFA 232
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
FV F E A RA E+NG+ + K +YV AQ+K +R + L+
Sbjct: 233 FVNFEDHEAAHRATEELNGRKLGDKEVYVGRAQKKSERESFLR 275
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A ++ +LY+ +L+ V D +L+ LF+ + GQ+ S +V D S G+G+V ++N
Sbjct: 282 AQKYQGINLYIKNLDDTVNDEELHKLFSALPFGQITSCKVMSD-DKGNSRGFGFVCYTNP 340
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHR 102
++A++A+ +N + KPI V + R
Sbjct: 341 EDASKAVSEMNGKMVANKPIYVALAER 367
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 211/377 (55%), Positives = 291/377 (77%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 45 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + +P R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN+LSCK
Sbjct: 105 EQLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCK 164
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD +G SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + ++ER ++I+ K+
Sbjct: 165 VATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVGHHISRKERQSKIDEMKA 224
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTN+Y+KN+ T+E+ + F E G +TS+V+ RD +G+S+ FGFVN+E ++A +AV
Sbjct: 225 QFTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAV 284
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K F ++ +V +AQKK+ERE EL+ EQ E K+QG NLY+KNLDD +DDE
Sbjct: 285 DNLNDKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDE 344
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+ F PFG+ITS KVMRD G+S+G GFV +S+PEEAS+A+ EMN KM+ SKPLYV+
Sbjct: 345 KLRAEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAVAEMNNKMIGSKPLYVSH 404
Query: 381 AQRKEDRRARLQVCLLQ 397
AQR+E RR +L+ + Q
Sbjct: 405 AQRREVRRQQLESQIAQ 421
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 158/300 (52%), Gaps = 26/300 (8%)
Query: 109 SGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
+GAG+ +++ LD + L + F+ G + S +V D + +S GY +V + N
Sbjct: 38 TGAGSPPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNA 97
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E+LN L+ ++ + +RD + K+ N+++KNL E + L +
Sbjct: 98 ADGERALEQLNYSLIKNRPCRI----MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDT 153
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G + S V D G SK +GFV++E ++ A A++ +NG +DK+ YVG +
Sbjct: 154 FAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVGHHISRK 213
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
ER+ E+K QF NLYIKN+D + DE+ + LF G++TS + R
Sbjct: 214 ERQSKIDEMKAQF-------------TNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQR 260
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
D G SRG GFV + T EEA +A+ +N K + L+V+ AQ+K +R L+ Q R
Sbjct: 261 DEEGRSRGFGFVNYETHEEAQKAVDNLNDKDFHGRKLFVSRAQKKAEREEELRKAHEQAR 320
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/376 (59%), Positives = 291/376 (77%), Gaps = 4/376 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + + L++ F +YG S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+P+EA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 363 LYVALAQRKEERKAHL 378
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + D+A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 164/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+YIKN D +DD +LK+LFS +G S KVM DPSG S+G GF
Sbjct: 184 --------GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/376 (60%), Positives = 291/376 (77%), Gaps = 5/376 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL A++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D G SKGYGFV F+ EESA +IEK+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 QDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN + +E L++ F +YGTITS VM DGKS+ FGFV FEN + A AV+
Sbjct: 183 TNVYVKNFGDELNDETLKEMFEKYGTITSHRVMIK-DGKSRGFGFVAFENPESAEHAVQE 241
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK+ + K YVG+AQKK+ER++ELK +FEQ E ++QG NLY+KNLDDSIDDE+
Sbjct: 242 LNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDER 301
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FSPFG+ITS KVM + G S+G GFV FS EEA++A+ EMNG++V SKPLYVALA
Sbjct: 302 LRKEFSPFGTITSAKVMLE-EGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALA 360
Query: 382 QRKEDRRARLQVCLLQ 397
QRKEDR+A L +Q
Sbjct: 361 QRKEDRKAHLASQYMQ 376
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 169/295 (57%), Gaps = 24/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-EKGNSKGYGFVHFETEESANTS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R ++ G N+++KN ++ + L + F +
Sbjct: 147 IEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGDELNDETLKEMFEKY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S +V +G+S+G+GFV F+N ESA+ A+++LNG L + K +YVG +K ER
Sbjct: 207 GTITSHRVMIK-DGKSRGFGFVAFENPESAEHAVQELNGKELGEGKILYVGRAQKKNERQ 265
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K +F N+YVKNL +S +E L+K F +GTITSA VM + +G+
Sbjct: 266 MEL-KRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVMLE-EGR 323
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F +++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 324 SKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRM 378
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/373 (59%), Positives = 289/373 (77%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNFS +A R
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-K 199
CKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+ K
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 200 SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+K FTNVY+KN + +E L++ F +YG S VM D GKS+ FGFV+FE +DA +
Sbjct: 187 AKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AVE +NG + + K +VG+AQKK ER+ ELK +FE +E ++QG NLYIKNLDD+ID
Sbjct: 247 AVEEINGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNLDDTID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYV
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERKAHL 378
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN ++ + L + F +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDEMEDEQLKEMFEKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+S+G+GFV F+ E A KA+E++NG LN K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFVGRAQKKMERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFELLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 164/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L I L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVVKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN D ++DE+LK++F +G S KVM D SG SRG GF
Sbjct: 186 K--------AKEF--TNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F E+A++A+ E+NG + K ++V AQ+K +R+A L+
Sbjct: 236 VSFEKHEDANKAVEEINGTELNGKTVFVGRAQKKMERQAELK 277
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M A + A+LY+ +L I + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
FS P +A RAL MN +V KP+ + +QR R
Sbjct: 59 FSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLR 94
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/379 (58%), Positives = 291/379 (76%), Gaps = 4/379 (1%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
A A + SLYVGDL ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AATAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 62
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSA
Sbjct: 63 PADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSA 122
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FGNILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 FGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE 181
Query: 195 TEIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
E+ K+K FTNVY+KN + ++ L++ F +YG S VM D GKS+ FGFV++E
Sbjct: 182 AEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEK 241
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+DA +AVE +NG + + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKN
Sbjct: 242 HEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKN 301
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
LDD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V
Sbjct: 302 LDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 360
Query: 373 SKPLYVALAQRKEDRRARL 391
SKPLYVALAQRKE+R+A L
Sbjct: 361 SKPLYVALAQRKEERKAHL 379
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 167/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 98 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + F +
Sbjct: 156 IEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD G+S+G+GFV ++ E A KA+E++NG LN K V+VG +K ER
Sbjct: 216 GKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQA 275
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+S
Sbjct: 276 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRS 333
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 334 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 387
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 164/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L I L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 72 TMNFDVVKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 127
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE E
Sbjct: 128 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAE--- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
M A +F N+YIKN D +DD++LK+LF +G S KVM DP+G SRG GF
Sbjct: 184 -----MGAKAKEF--TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGF 236
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V++ E+A++A+ EMNG + K ++V AQ+K +R+A L+
Sbjct: 237 VSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELK 278
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 216/378 (57%), Positives = 290/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN + +E L++ FG+YG S VM D +GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ + GK + K +VG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ F PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERQAHL 378
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 171/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN + + V + R + GA N++IKN ++ + L + F +
Sbjct: 155 IDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD NG+SKG+GFV F+ E AQKA++++ G +N K ++VG +K ER T
Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQT 274
Query: 196 EI-------NKSKFT-----NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + T N+YVKNL + +E L+K F +GTITSA VM +G G+SK
Sbjct: 275 ELKRKFEQMNQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 167/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN D ++DE+LK++F +G S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G S+G GFV+F E+A +A+ EM GK + K ++V AQ+K +R+ L+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELK 277
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 227/390 (58%), Positives = 298/390 (76%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLR+SG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDIIKGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSC+VA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCRVAQDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFISR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ + A RAV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPNAADRAVADLNGKEIAEGKIMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD+IDDE+L++ F+PFG+ITS KVM + G S+G GFV FS EEA++A+ EMN
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSVKVMME-DGRSKGFGFVCFSLAEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G++V SKPLYVALAQRKEDR+A L LQ
Sbjct: 357 GRIVGSKPLYVALAQRKEDRKAHLASQYLQ 386
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 167/294 (56%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S RV +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCRVAQDESGS-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + + L + F +
Sbjct: 156 IDRVNGMLLNGKKVYVGKFISRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+S+G+GFV F++ +A +A+ LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMSKDDGKSRGFGFVAFEDPNAADRAVADLNGKEIAEGKIMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL ++ +E L+K F +GTITS VM + DG+S
Sbjct: 276 QELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSVKVMME-DGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F +++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 335 KGFGFVCFSLAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYLQRV 388
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 212/377 (56%), Positives = 291/377 (77%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 48 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 107
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + +P R+M+S RDP+LRK+G GNIFIKNLD+AID+KALHDTF+AFG +LSCK
Sbjct: 108 EQLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGTVLSCK 167
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + ++ER +++ ++
Sbjct: 168 VATDETGRSKGYGFVHYETAEAAENAIKAVNGMLLNDKKVYVGHHISRKERQSKLEEMRA 227
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTN+YVKNL T+++ + F +YG +TSAV+ D +GKSK FGFVNFE D+A +AV
Sbjct: 228 QFTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAV 287
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN + K+ +V +AQKK+ERE EL+ +EQ E K+QG NLYIKNL+D +DD+
Sbjct: 288 DELNDFELKGKKLFVSRAQKKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDD 347
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+ F PFG+ITSCKVMRD G S+G GFV FS+P+EA++A+ EMN KM+ +KPLYV+L
Sbjct: 348 KLRAEFEPFGTITSCKVMRDEKGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 407
Query: 381 AQRKEDRRARLQVCLLQ 397
AQR+E RR +L+ + Q
Sbjct: 408 AQRREVRRQQLESQIAQ 424
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+++ +LY+ +LE +V D +L F G + S +V RD +S G+G+V FS+ EA
Sbjct: 328 SKYQGVNLYIKNLEDDVDDDKLRAEFEPFGTITSCKVMRD-EKGQSKGFGFVCFSSPDEA 386
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 387 TKAVAEMNNKMIGTKPLYVSLAQR 410
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/376 (59%), Positives = 291/376 (77%), Gaps = 4/376 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + SLYVGDL ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNFS +
Sbjct: 5 AGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + +E L++ F +YG S VM D GKS+ FGFV++E +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG + + K +VG+AQKK+ER+ ELK +FE +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 363 LYVALAQRKEERKAHL 378
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 109 SGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNE 162
+ AGN +++ +L I L++ FS G +LS +V D+ +S GY +V F
Sbjct: 3 TAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQP 62
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A++A++ +N ++ K + + +RD + KS NV++KNL +S + L +
Sbjct: 63 ADAERALDTMNFDVVKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDT 118
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + +
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
ERE EL + A +F N+YIKN D +DDE+LK+LF +G S KVM DP+
Sbjct: 178 EREAELGAK--------AKEF--TNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPT 227
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G SRG GFV++ E+A++A+ +MNG + K ++V AQ+K +R+A L+
Sbjct: 228 GKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELK 277
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 165/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + F +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D G+S+G+GFV ++ E A KA+E +NG LN K V+VG +K ER
Sbjct: 215 GKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+S
Sbjct: 275 EL-KRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L I + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
FS P +A RAL MN +V KP+ + +QR R
Sbjct: 59 FSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLR 94
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 216/375 (57%), Positives = 288/375 (76%), Gaps = 3/375 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVNF NA + RA+E
Sbjct: 46 TSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 105
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + +P R+M+S RDP+LR++G GNIFIKNLD ID+KALHDTF+AFGNILSCKV
Sbjct: 106 QLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKV 165
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
AT +G S GYGFV ++ E+A AI+ +NGMLLNDK+VYVGH + ++ER +I +S+
Sbjct: 166 ATSESG-SLGYGFVHYETAEAADAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRAR 224
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVY KN+ T+E+ +K F +YG ITS V+ RD DGKSK FGFVNFEN D+A AV+
Sbjct: 225 FTNVYCKNVDADVTDEEFEKLFTKYGKITSCVLQRDEDGKSKGFGFVNFENHDEAQTAVD 284
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+ F ++ +V +AQKKSERE EL+ +E E KFQG NLY+KN+ +S DDE+
Sbjct: 285 ELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDER 344
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ F+PFG+ITSCK+MR PSG+SRG GFV +S PEEA++A+ EMNGKM+ ++PLYVALA
Sbjct: 345 LRDEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALA 404
Query: 382 QRKEDRRARLQVCLL 396
QRK+ RR +L+ ++
Sbjct: 405 QRKDVRRQQLEAQIM 419
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+F +LY+ ++ + D +L D F G + S ++ R S S G+G+V +S +EA
Sbjct: 325 KFQGVNLYLKNIPESYDDERLRDEFAPFGAITSCKIMRAPSGV-SRGFGFVCYSAPEEAN 383
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N L+ +P+ V + R
Sbjct: 384 KAVSEMNGKMLDNRPLYVALAQR 406
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/383 (57%), Positives = 288/383 (75%), Gaps = 7/383 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N GG + SLYVGDL A+VT++ LY F+ GQ++S+RVCRD+ TRRSLGY Y+
Sbjct: 1 MNSGGP---AYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYI 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A AL+ +N+ + G+PIR+M+S RDP LRKSG GNIFIKN+D++ID+KAL+D
Sbjct: 58 NFQQPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKV D NG SKGYGFV F+ +E+A +AIE +NGMLLND++V+VGHF +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Query: 191 QERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ +FTNVY+KN E E L+ F E+G S VM D G+S+ FGFV
Sbjct: 177 KEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFV 236
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
NF N DA RAV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E ++QG NL
Sbjct: 237 NFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNL 296
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y+KNLDDSIDDEKL++ F+P+G+ITS KVM D G SRG GFV FS+PEEA++A+ EMNG
Sbjct: 297 YVKNLDDSIDDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNG 355
Query: 369 KMVVSKPLYVALAQRKEDRRARL 391
++V +KPLYVALAQRKE+R+A L
Sbjct: 356 RIVSTKPLYVALAQRKEERKAIL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +++ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAANRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + ID + L + F+ F
Sbjct: 155 IETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS V TD G+S+G+GFV F N A++A+ ++NG LN + +YVG ++ ER
Sbjct: 215 GKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQG 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL +S +E L+K F YGTITSA VM DG G S
Sbjct: 275 EL-KRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+ FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 RGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYIQRL 386
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 154/282 (54%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L+ FS G I+S +V D + +S GY ++ F A+ A++
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ + + + +RD + KS N+++KN+ ES + L +F +G I
Sbjct: 71 TMNYEVIKGRPIRI----MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG + + ERE E+
Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEM-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+YIKN + ID EKLK +F+ FG S VM D G SRG GF
Sbjct: 184 --------GAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V F +A RA+ EMNGK + + LYV AQ++ +R+ L+
Sbjct: 236 VNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELK 277
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/376 (59%), Positives = 291/376 (77%), Gaps = 4/376 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + SLYVGDL ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNFS +
Sbjct: 5 AGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + +E L++ F +YG S VM D GKS+ FGFV++E +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG + + K +VG+AQKK+ER+ ELK +FE +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 363 LYVALAQRKEERKAHL 378
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 109 SGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNE 162
+ AGN +++ +L I L++ FS G +LS +V D+ +S GY +V F
Sbjct: 3 TAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQP 62
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A++A++ +N ++ K + + +RD + KS NV++KNL +S + L +
Sbjct: 63 ADAERALDTMNFDVVKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDT 118
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + +
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
ERE EL A + N+YIKN D +DDE+LK+LF +G S KVM DP+
Sbjct: 178 EREAEL----------GAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPT 227
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G SRG GFV++ E+A++A+ +MNG + K ++V AQ+K +R+A L+
Sbjct: 228 GKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELK 277
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 165/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + F +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D G+S+G+GFV ++ E A KA+E +NG LN K V+VG +K ER
Sbjct: 215 GKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+S
Sbjct: 275 EL-KRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L I + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
FS P +A RAL MN +V KP+ + +QR R
Sbjct: 59 FSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLR 94
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 213/381 (55%), Positives = 290/381 (76%), Gaps = 6/381 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 43 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 102
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN+LSCK
Sbjct: 103 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCK 162
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL------RKQERDTE 196
VATD +G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + R+++ E
Sbjct: 163 VATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKASSRERQSKLE 222
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
K++FTN+YVKNL T++D K F ++G +TSAV+ D G+S+ FGFVNFE ++A
Sbjct: 223 EMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEA 282
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
+AVE L+ ++ ++ +V +AQKK+ERE EL+ +EQ E K+QG NLYIKNL+D
Sbjct: 283 QKAVETLHDSEYHGRKLFVSRAQKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDD 342
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
IDDE+L+Q F PFGSITS KVMRD G S+G GFV FS+P+EA++A+ EMN KM+ SKPL
Sbjct: 343 IDDERLRQEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPL 402
Query: 377 YVALAQRKEDRRARLQVCLLQ 397
YV+LAQR+E RR +L+ + Q
Sbjct: 403 YVSLAQRREVRRQQLESQIAQ 423
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+++ +LY+ +LE ++ D +L F G + S +V RD S G+G+V FS+ EA
Sbjct: 327 SKYQGVNLYIKNLEDDIDDERLRQEFEPFGSITSAKVMRD-EKGTSKGFGFVCFSSPDEA 385
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 386 TKAVAEMNNKMIGSKPLYVSLAQR 409
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/378 (58%), Positives = 284/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+ A SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 308 SGATAIPMASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQL 367
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A R LE +N + GKP+R+M+S RDPSLRKSG GNIFIKNL+K+ID+KAL+ TFSAF
Sbjct: 368 ADAERVLETMNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLEKSIDNKALYKTFSAF 427
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV +D NG SKGYGFV F+N+++A KAIEK+NG+ LN+ +VYVG F ++ER+
Sbjct: 428 GNILSCKVISDENG-SKGYGFVHFENQQAADKAIEKMNGVRLNNLKVYVGRFKSRKEREL 486
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E + L + FG++G S VM D GKSK FGFV++E
Sbjct: 487 ELGARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEKH 546
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA RAV+ +NGK+F+ K YVG+AQKK ER+ ELK FEQ +E + ++QG NLY+KNL
Sbjct: 547 EDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSRYQGVNLYVKNL 606
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDE+L++ FSPFG+ITS KVM + G SRG GFV FS PEEA++A+ EMNGK+V +
Sbjct: 607 DDSIDDERLRKAFSPFGTITSAKVMME-GGHSRGFGFVCFSAPEEAAKAVSEMNGKLVAT 665
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRK DR+ L
Sbjct: 666 KPLYVALAQRKRDRQVHL 683
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 174/293 (59%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LY F+ G ++S +V D S GYG+V+F N Q A +A
Sbjct: 402 GVGNIFIKNLEKSIDNKALYKTFSAFGNILSCKVISD--ENGSKGYGFVHFENQQAADKA 459
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + V + R + GA N++IKN + +D+ L + F F
Sbjct: 460 IEKMNGVRLNNLKVYVGRFKSRKERELELGARAREFTNVYIKNFGEDMDNDRLTEVFGKF 519
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G+ LS KV TD +G+SKG+GFV ++ E AQ+A++++NG N K++YVG +K ER T
Sbjct: 520 GHALSVKVMTDESGKSKGFGFVSYEKHEDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQT 579
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ + S++ N+YVKNL +S +E L+K+F +GTITSA VM +G G S+
Sbjct: 580 ELKRHFEQVKQERSSRYQGVNLYVKNLDDSIDDERLRKAFSPFGTITSAKVMMEG-GHSR 638
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F ++AA+AV +NGK K YV AQ+K +R++ L +Q+ Q M
Sbjct: 639 GFGFVCFSAPEEAAKAVSEMNGKLVATKPLYVALAQRKRDRQVHLTNQYMQRM 691
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 165/288 (57%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS +V D L +S GY +V F A++ +E
Sbjct: 317 SLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADAERVLET 376
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K V + +RD + KS N+++KNL +S + L K+F +G I S
Sbjct: 377 MNLDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLEKSIDNKALYKTFSAFGNILS 432
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK +GFV+FEN A +A+E +NG + ++ + YVG+ + + ERELEL +
Sbjct: 433 CKVISDENG-SKGYGFVHFENQQAADKAIEKMNGVRLNNLKVYVGRFKSRKERELELGAR 491
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +D+++L ++F FG S KVM D SG S+G GFV
Sbjct: 492 --------AREF--TNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFV 541
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
++ E+A RA+ EMNGK K +YV AQ+K +R+ L+ Q +
Sbjct: 542 SYEKHEDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVK 589
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/383 (57%), Positives = 288/383 (75%), Gaps = 7/383 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N GG + SLYVGDL A+VT++ LY F+ GQ++S+RVCRD+ TRRSLGY Y+
Sbjct: 1 MNSGGP---AYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYI 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A AL+ +N+ + G+PIR+M+S RDP LRKSG GNIFIKN+D++ID+KAL+D
Sbjct: 58 NFQQPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKV D NG SKGYGFV F+ +E+A +AIE +NGMLLND++V+VGHF +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Query: 191 QERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ +FTNVY+KN E E L+ F E+G S VM D G+S+ FGFV
Sbjct: 177 KEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFV 236
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
NF N DA RAV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E ++QG NL
Sbjct: 237 NFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNL 296
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y+KNLDDSIDDEKL++ F+P+G+ITS KVM D G SRG GFV FS+PEEA++A+ EMNG
Sbjct: 297 YVKNLDDSIDDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNG 355
Query: 369 KMVVSKPLYVALAQRKEDRRARL 391
++V +KPLYVALAQRKE+R+A L
Sbjct: 356 RIVSTKPLYVALAQRKEERKAIL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +++ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAANRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + ID + L + F+ F
Sbjct: 155 IETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS V TD G+S+G+GFV F N A++A+ ++NG LN + +YVG ++ ER
Sbjct: 215 GKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQG 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL +S +E L+K F YGTITSA VM DG G S
Sbjct: 275 EL-KRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+ FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 RGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYIQRL 386
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 154/282 (54%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L+ FS G I+S +V D + +S GY ++ F A+ A++
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ + + + +RD + KS N+++KN+ ES + L +F +G I
Sbjct: 71 TMNYEVIKGRPIRI----MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG + + ERE E+
Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEM-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+YIKN + ID EKLK +F+ FG S VM D G SRG GF
Sbjct: 184 --------GAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V F +A RA+ EMNGK + + LYV AQ++ +R+ L+
Sbjct: 236 VNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELK 277
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/376 (60%), Positives = 291/376 (77%), Gaps = 5/376 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL A++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D G SKGYGFV F+ EESA +IEK+NGMLLN K+V+VG F+ ++ER+ E+ K+K F
Sbjct: 123 QDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFVGRFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN + T+E L++ F +YGTITS VM + KS+ FGFV FEN + A AV+
Sbjct: 183 TNVYVKNFGDELTDESLKEMFEKYGTITSHRVMIK-ENKSRGFGFVAFENPESAEVAVQE 241
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK+ D K YVG+AQKK+ER++ELK +FEQ E ++QG NLY+KNLDDSIDDE+
Sbjct: 242 LNGKELGDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDER 301
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FSPFG+ITS KVM + G S+G GFV FS EEA++A+ EMNG++V SKPLYVALA
Sbjct: 302 LRKEFSPFGTITSAKVMLE-EGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALA 360
Query: 382 QRKEDRRARLQVCLLQ 397
QRKEDR+A L +Q
Sbjct: 361 QRKEDRKAHLASQYMQ 376
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 167/295 (56%), Gaps = 24/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-EKGNSKGYGFVHFETEESANTS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN K + V + R ++ G N+++KN + ++L + F +
Sbjct: 147 IEKVNGMLLNAKKVFVGRFIPRKEREKELGEKAKLFTNVYVKNFGDELTDESLKEMFEKY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV-YVGHFLRKQERD 194
G I S +V N +S+G+GFV F+N ESA+ A+++LNG L D +V YVG +K ER
Sbjct: 207 GTITSHRVMIKEN-KSRGFGFVAFENPESAEVAVQELNGKELGDGKVLYVGRAQKKNERQ 265
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K +F N+YVKNL +S +E L+K F +GTITSA VM + +G+
Sbjct: 266 MEL-KRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVMLE-EGR 323
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F +++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 324 SKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRM 378
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/376 (58%), Positives = 290/376 (77%), Gaps = 4/376 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + SLYVGDL ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNFS +
Sbjct: 5 AGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + +E L++ F +YG S VM D GKS+ FGF+++E +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG + + K +VG+AQKK ER+ ELK +FE +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 363 LYVALAQRKEERKAHL 378
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 166/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN ++ + L + F +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMNDERLKELFDKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD G+S+G+GF+ ++ E A KA+E +NG LN K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+S
Sbjct: 275 EL-KRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 109 SGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNE 162
+ AGN +++ +L I L++ FS G +LS +V D+ +S GY +V F
Sbjct: 3 TAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQP 62
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A++A++ +N ++ K + + +RD + KS NV++KNL +S + L +
Sbjct: 63 ADAERALDTMNFDVVKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDT 118
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + +
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
ERE EL + A +F N+YIKN D ++DE+LK+LF +G S KVM DP+
Sbjct: 178 EREAELGAK--------AKEF--TNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPT 227
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G SRG GF+++ E+A++A+ +MNG + K ++V AQ+K +R+A L+
Sbjct: 228 GKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELK 277
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L I + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
FS P +A RAL MN +V KP+ + +QR R
Sbjct: 59 FSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLR 94
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 226/391 (57%), Positives = 297/391 (75%), Gaps = 7/391 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N GG N + SLYVGDL+ +VT+S L++ F Q G V+S+RVCRD+ +RRSLGY YV
Sbjct: 1 MNSGGGN---YTMASLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF PL +P+R+M+S RDPSLRKSG GN+FIKNL K ID+KA+ D
Sbjct: 58 NFHQPGDAERALDTMNFEPLKNRPMRIMWSQRDPSLRKSGVGNVFIKNLHKDIDNKAIFD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSC+VATD G S+GYGFV F+ EE+A +AI K+NGMLLN+K+V+VG F+ +
Sbjct: 118 TFSAFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGKFVPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
ER+ + +K++ FTNVYVKN E + L++ F YG ITSA VM D GKS+ FGFV
Sbjct: 178 SERERMMGDKARLFTNVYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQTGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
+FEN D+A +AV+ LN K+ + K+ YVG+AQKK+ER +LK +FEQ E ++QG N
Sbjct: 238 SFENPDNAEQAVKELNDKELGNGKKIYVGRAQKKAERLSDLKRKFEQLKMERMTRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI-SRGSGFVAFSTPEEASRALLEM 366
LY+KNLDD IDDE+L++ F+P+G+ITS KVM D +G S+G GFV FS+PEEA++A+ EM
Sbjct: 298 LYVKNLDDVIDDERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEM 357
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
NG+++V KPLYVALAQRKEDRRA L +Q
Sbjct: 358 NGRIIVQKPLYVALAQRKEDRRAHLSSQFVQ 388
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/364 (59%), Positives = 279/364 (76%), Gaps = 1/364 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL+ V ++QL+ +F+QMG V SVRVCRD TRRSLGYGYVN+S+ +A RA+E
Sbjct: 38 VSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAME 97
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TP+NGK IR+M+SHRDPS RKSG GNIFIKNLD++ID+KALHDTF AFG ILSCK+
Sbjct: 98 ALNYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKI 157
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
A +G+SKGYGFV F+ +E+A AIEK+NGM L K+V+V F+++ +R ++KFT
Sbjct: 158 AHQ-DGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFT 216
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NV+VKNL EE++++ F +G IT+ V+M+D + KSK FGFVNF++ + A AVE +
Sbjct: 217 NVFVKNLDPEMAEEEIKEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETM 276
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N + + YVG+AQKK+ERE L+ QFE+ E K+QGANLY+KNLDDSIDDE LK
Sbjct: 277 NNSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLK 336
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
Q FS +G+ITS KVMRD GIS+G GFV F++PEEASRA E NG M+ KP+YVA+AQR
Sbjct: 337 QEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQR 396
Query: 384 KEDR 387
KE R
Sbjct: 397 KEIR 400
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 153/279 (54%), Gaps = 18/279 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F G ++S ++ RS GYG+V+F + A A
Sbjct: 124 GVGNIFIKNLDESIDNKALHDTFIAFGPILSCKIAHQ--DGRSKGYGFVHFETDEAANLA 181
Query: 82 LEMLNFTPLNGKPIRVM-YSHRDPSLRKSGAG---NIFIKNLDKAIDHKALHDTFSAFGN 137
+E +N L GK + V + R L +G N+F+KNLD + + + + FS FG
Sbjct: 182 IEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFTNVFVKNLDPEMAEEEIKEHFSTFGV 241
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT-- 195
I + + D N +SKG+GFV FD+ E+A+ A+E +N L + +YVG +K ER+
Sbjct: 242 ITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRAQKKAEREQIL 301
Query: 196 ----------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+ K + N+YVKNL +S +E L++ F YG ITSA VMRD G SK F
Sbjct: 302 RRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRDEKGISKGF 361
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
GFV F + ++A+RA NG + K YV AQ+K R
Sbjct: 362 GFVCFTSPEEASRAATETNGLMINGKPIYVAMAQRKEIR 400
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEASR 361
G +LY+ +LD+++ + +L +FS G +TS +V RD ++R G G+V +S+ +A R
Sbjct: 37 GVSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRD--AVTRRSLGYGYVNYSSGADAVR 94
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRR 388
A+ +N + K + + + R R
Sbjct: 95 AMEALNYTPINGKTIRIMWSHRDPSTR 121
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/391 (58%), Positives = 292/391 (74%), Gaps = 17/391 (4%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+ VCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAA-------------RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKA 122
+ RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+
Sbjct: 63 ADVMPTSTSSSPLTVTERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKS 122
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
ID+KAL+DTFSAFGNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V
Sbjct: 123 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 181
Query: 183 YVGHFLRKQERDTEIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+VG F ++ER+ E+ K+K FTNVY+KN E +E L++ F ++G S VMRD G
Sbjct: 182 FVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSG 241
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSK FGFV++E +DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E
Sbjct: 242 KSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI 301
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
++QG NLYIKNLDD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA+
Sbjct: 302 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEAT 360
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
+A+ EMNG++V SKPLYVALAQRKE+R+A L
Sbjct: 361 KAVTEMNGRIVGSKPLYVALAQRKEERKAHL 391
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 110 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 167
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 168 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 227
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 228 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 287
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 288 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 345
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 346 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 399
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 165/295 (55%), Gaps = 29/295 (9%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEES------ 164
++++ +L + L++ FS G +LS V D+ +S GY +V F
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADVMPTST 70
Query: 165 -------AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEE 217
++A++ +N ++ K + + +RD + KS NV++KNL +S +
Sbjct: 71 SSSPLTVTERALDTMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNK 126
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L +F +G I S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+
Sbjct: 127 ALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 185
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
+ + ERE EL + A +F N+YIKN + +DDE LK+LFS FG S KV
Sbjct: 186 FKSRKEREAELGAK--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKV 235
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
MRDPSG S+G GFV++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 236 MRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 290
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEE-------------ASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P + RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADVMPTSTSSSPLTVTERALDTMNFDVIKGKPIRIMWSQRDPSLR 107
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/378 (58%), Positives = 289/378 (76%), Gaps = 7/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ F G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERH 238
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 239 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 298
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 299 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 357
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 358 KPLYVALAQRKEERQAHL 375
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 172/294 (58%), Gaps = 26/294 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF--- 211
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 212 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 271
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 272 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 329
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 330 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 383
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 165/291 (56%), Gaps = 19/291 (6%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF P S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDE 223
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 274
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/388 (54%), Positives = 291/388 (75%), Gaps = 2/388 (0%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
N A+ + SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN
Sbjct: 30 NPPAPQASTAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVN 89
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ NA + RALE LN++ + + R+M+S RDP+LRK+G GN+FIKNLD+AID+KALHDT
Sbjct: 90 YLNAADGERALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDT 149
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
F AFGN+LSCKVATD +G+SKGYGFV ++ E+A AI+ +NGMLLNDK+VYVGH + ++
Sbjct: 150 FVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRK 209
Query: 192 ERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
ER ++++ K++FTN+Y+KNL T+E+ + F YG +TS++V D +GKSK FGFVN
Sbjct: 210 ERQSKLDEMKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVN 269
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
+E ++A RAV+ L+ K+ +V +AQKK+ERE EL+ +EQ E K+QG NLY
Sbjct: 270 YERHEEAQRAVDELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGVNLY 329
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
IKNL+D DD+KL+ F PFG+ITSCKVMRD G S+G GFV FS+P+EA++A+ EMN K
Sbjct: 330 IKNLEDDFDDDKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNK 389
Query: 370 MVVSKPLYVALAQRKEDRRARLQVCLLQ 397
M+ +KPLYV+LAQR+E RR +L+ + Q
Sbjct: 390 MIGTKPLYVSLAQRREVRRQQLESQIAQ 417
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/364 (59%), Positives = 278/364 (76%), Gaps = 1/364 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL+ V ++QL+ +F+QMG V SVRVCRD TRRSLGYGYVN+S+ +A RA+E
Sbjct: 37 VSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAME 96
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TP+NGK IR+M+SHRDPS RKSG GNIFIKNLD++ID+KALHDTF AFG ILSCK+
Sbjct: 97 ALNYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKI 156
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
A +G+SKGYGFV F+ +E+A AIEK+NGM L K+V+V F+++ +R ++KFT
Sbjct: 157 AHQ-DGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFT 215
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NV+VKNL EE++ + F +G IT+ V+M+D + KSK FGFVNF++ + A AVE +
Sbjct: 216 NVFVKNLDPEMAEEEINEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETM 275
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N + + YVG+AQKK+ERE L+ QFE+ E K+QGANLY+KNLDDSIDDE LK
Sbjct: 276 NNSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLK 335
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
Q FS +G+ITS KVMRD GIS+G GFV F++PEEASRA E NG M+ KP+YVA+AQR
Sbjct: 336 QEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQR 395
Query: 384 KEDR 387
KE R
Sbjct: 396 KEIR 399
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 154/279 (55%), Gaps = 18/279 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F G ++S ++ RS GYG+V+F + A A
Sbjct: 123 GVGNIFIKNLDESIDNKALHDTFIAFGPILSCKIAHQ--DGRSKGYGFVHFETDEAANLA 180
Query: 82 LEMLNFTPLNGKPIRVM-YSHRDPSLRKSGAG---NIFIKNLDKAIDHKALHDTFSAFGN 137
+E +N L GK + V + R L +G N+F+KNLD + + +++ FS FG
Sbjct: 181 IEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFTNVFVKNLDPEMAEEEINEHFSTFGV 240
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT-- 195
I + + D N +SKG+GFV FD+ E+A+ A+E +N L + +YVG +K ER+
Sbjct: 241 ITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRAQKKAEREQIL 300
Query: 196 ----------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+ K + N+YVKNL +S +E L++ F YG ITSA VMRD G SK F
Sbjct: 301 RRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRDEKGISKGF 360
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
GFV F + ++A+RA NG + K YV AQ+K R
Sbjct: 361 GFVCFTSPEEASRAATETNGLMINGKPIYVAMAQRKEIR 399
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEASR 361
G +LY+ +LD+++ + +L +FS G +TS +V RD ++R G G+V +S+ +A R
Sbjct: 36 GVSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRD--AVTRRSLGYGYVNYSSGADAVR 93
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRR 388
A+ +N + K + + + R R
Sbjct: 94 AMEALNYTPINGKTIRIMWSHRDPSTR 120
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 212/377 (56%), Positives = 290/377 (76%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 6 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 65
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN+LSCK
Sbjct: 66 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCK 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD +G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + ++ER ++I K+
Sbjct: 126 VATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKERQSKIEEMKN 185
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTN+YVKN+ T+E+ + F +G ITSAV+ D +GKS+ FGFVNF+ ++A AV
Sbjct: 186 QFTNIYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAV 245
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
EAL+ ++ +V +AQKK+ERE EL+ +EQ E K+QG NLYIKNL+D IDDE
Sbjct: 246 EALHDSDVKGRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDIDDE 305
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F PFG+ITS KVMRD GIS+G GFV FS+P+EA++A+ EMN KM+ +KPLYV+L
Sbjct: 306 RLRGEFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 365
Query: 381 AQRKEDRRARLQVCLLQ 397
AQR+E RR +L+ + Q
Sbjct: 366 AQRREVRRQQLESQIAQ 382
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+++ +LY+ +LE ++ D +L F G + S +V RD S G+G+V FS+ EA
Sbjct: 286 SKYQGVNLYIKNLEDDIDDERLRGEFEPFGNITSAKVMRD-EKGISKGFGFVCFSSPDEA 344
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 345 TKAVAEMNNKMIGTKPLYVSLAQR 368
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/388 (54%), Positives = 291/388 (75%), Gaps = 2/388 (0%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
N A+ + SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN
Sbjct: 30 NPPAPQASTAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVN 89
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ NA + RALE LN++ + + R+M+S RDP+LRK+G GN+FIKNLD+AID+KALHDT
Sbjct: 90 YLNAADGERALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDT 149
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
F AFGN+LSCKVATD +G+SKGYGFV ++ E+A AI+ +NGMLLNDK+VYVGH + ++
Sbjct: 150 FVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRK 209
Query: 192 ERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
ER ++++ K++FTN+Y+KNL T+E+ + F YG +TS++V D +GKSK FGFVN
Sbjct: 210 ERQSKLDEMKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVN 269
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
+E ++A RAV+ L+ K+ +V +AQKK+ERE EL+ +EQ E K+QG NLY
Sbjct: 270 YERHEEAQRAVDELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGINLY 329
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
IKNL+D DD+KL+ F PFG+ITSCKVMRD G S+G GFV FS+P+EA++A+ EMN K
Sbjct: 330 IKNLEDDFDDDKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNK 389
Query: 370 MVVSKPLYVALAQRKEDRRARLQVCLLQ 397
M+ +KPLYV+LAQR+E RR +L+ + Q
Sbjct: 390 MIGTKPLYVSLAQRREVRRQQLESQIAQ 417
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/375 (57%), Positives = 290/375 (77%), Gaps = 3/375 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVNF NA + RA+E
Sbjct: 47 TSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 106
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + +P R+M+S RDP+LR++G GNIFIKNLD ID+KALHDTF+AFGNILSCKV
Sbjct: 107 QLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKV 166
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
AT+ G S GYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + ++ER +I +S+
Sbjct: 167 ATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRAN 225
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVY KN+ T+E+ +K F YG ITS V+ RD DGKSK FGFVNFE+ ++A AV+
Sbjct: 226 FTNVYAKNVDPDVTDEEFEKLFTRYGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQTAVD 285
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+ F ++ +V +AQKKSERE EL+ +E E KFQG NLY+KN+ +S DDE+
Sbjct: 286 ELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDER 345
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F+PFG+ITSCK+MR PSG+SRG GFV +S PEEA++A+ EMNGKM+ ++PLYVALA
Sbjct: 346 LREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALA 405
Query: 382 QRKEDRRARLQVCLL 396
QRK+DRR +L+ ++
Sbjct: 406 QRKDDRRQQLEAQIM 420
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+F +LY+ ++ + D +L + F G + S ++ R S S G+G+V +S +EA
Sbjct: 326 KFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGV-SRGFGFVCYSVPEEAN 384
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N L+ +P+ V + R
Sbjct: 385 KAVSEMNGKMLDNRPLYVALAQR 407
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 207/377 (54%), Positives = 289/377 (76%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ VT++ ++++FN +G V S+RVCRD TRRSLGY YVN+ N + RAL
Sbjct: 44 SASLYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTADGERAL 103
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+P R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF AFGN+LSCK
Sbjct: 104 EQLNYSLIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFVAFGNVLSCK 163
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVG + ++ER ++++ K+
Sbjct: 164 VATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGPHIPRKERQSKLDEMKA 223
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTN+Y+KNL T+E+ ++ F YG++TSA+V D +G+SK FGFVN+E+ ++A AV
Sbjct: 224 QFTNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAV 283
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ L+ K+ YV +AQKK+ERE EL+ +EQ E K+QG NLY+KNL+D +DD+
Sbjct: 284 DNLHDTDLKGKKLYVTRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDD 343
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+ F PFG+ITSCKVM D G S+G GFV FS+P+EA++A+ EMN KM+ SKPLYV+L
Sbjct: 344 KLRAEFEPFGTITSCKVMSDEKGSSKGFGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSL 403
Query: 381 AQRKEDRRARLQVCLLQ 397
AQR+E RR +L+ + Q
Sbjct: 404 AQRREVRRQQLESQIAQ 420
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 17/198 (8%)
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENS 253
T I+ + ++YV L + TE + + F G + S V RD +S + +VN+ N+
Sbjct: 37 TSISSAPSASLYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNT 96
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
D RA+E LN + + +Q+ A K N++IKNL
Sbjct: 97 ADGERALEQLNYSLIKGRPCRIMWSQRDP----------------ALRKTGQGNIFIKNL 140
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
D+ ID++ L F FG++ SCKV D G S+G GFV + T E A A+ +NG ++
Sbjct: 141 DEQIDNKALHDTFVAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLND 200
Query: 374 KPLYVALAQRKEDRRARL 391
K +YV +++R+++L
Sbjct: 201 KKVYVGPHIPRKERQSKL 218
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+++ +LYV +LE +V D +L F G + S +V D S G+G+V FS+ EA
Sbjct: 324 SKYQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSD-EKGSSKGFGFVCFSSPDEA 382
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 383 TKAIAEMNNKMIGSKPLYVSLAQR 406
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 210/374 (56%), Positives = 291/374 (77%), Gaps = 2/374 (0%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RALE L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N++ + G+ R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN+LSCKVAT
Sbjct: 110 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFGNVLSCKVAT 169
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFT 203
D +G+SKGYGFV ++ E+A AI+ +NGMLLNDK+VYVG + ++ER ++I K++FT
Sbjct: 170 DEHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSKIEEMKAQFT 229
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKN+ T+E+ ++ F ++G +TSAV+ RD +G+SK FGFVNFE ++A + VE+L
Sbjct: 230 NVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESL 289
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ + + K+ +V +AQKK+ERE EL+ +EQ E K+QG NLYIKNL+D +DDE+L+
Sbjct: 290 HDFELNGKKLFVTRAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERLR 349
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
Q F PFG+ITS KVMRD G S+G GFV FS+P+EA++A+ EMN KM+ +KPLYV+LAQR
Sbjct: 350 QEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQR 409
Query: 384 KEDRRARLQVCLLQ 397
+E RR +L+ + Q
Sbjct: 410 REVRRQQLESQIAQ 423
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+++ +LY+ +LE V D +L F G + S +V RD S G+G+V FS+ EA
Sbjct: 327 SKYQGVNLYIKNLEDEVDDERLRQEFEPFGTITSAKVMRD-EKGSSKGFGFVCFSSPDEA 385
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 386 TKAVAEMNNKMIGTKPLYVSLAQR 409
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/375 (56%), Positives = 291/375 (77%), Gaps = 2/375 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL+
Sbjct: 48 SLYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQ 107
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN++ + + R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN+LSCKVA
Sbjct: 108 LNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVA 167
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
TD +G SKGYGFV ++ E+A+ AI+ +NGMLLNDK+V+VGH + ++ER ++I+ K+++
Sbjct: 168 TDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKIDEMKAQY 227
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+YVKNL +E ++ FG++G ITSA + +D +GKS+ FGFVNFE+ + AA AVE
Sbjct: 228 TNIYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVET 287
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
L+ + + ++ YV +AQKKSERE EL+ +E +E K+QG NLYIKNL+D IDDEKL
Sbjct: 288 LHDTEINGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKL 347
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+ F PFG+ITSCKVMRD S+G GFV FS+P+EA++A+ EMN KM+ SKPLYV+LAQ
Sbjct: 348 RAEFEPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVSLAQ 407
Query: 383 RKEDRRARLQVCLLQ 397
R+E RR +L+ + Q
Sbjct: 408 RREVRRQQLETQIAQ 422
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/376 (58%), Positives = 300/376 (79%), Gaps = 4/376 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ L++ F+ +G V+S+RVCRD+ TRRSLGY YVNF N +A RAL+
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF L G+P+R+M+S RDPSLRKSG GN+FIKNLD++ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDILKGRPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D GQSKGYGFV F+ E+SA ++IEK+NGMLLN K+V+VG F+ +++R+ E+ K+K +
Sbjct: 123 QDETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLY 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN+ E+ +++L + F +YG+ITS VM DG S+ FGFV FE+ ++A +AV
Sbjct: 183 TNVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTE 242
Query: 263 LNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+GK+ + K +YVG+AQKK+ER+ ELK +FEQ E +++QG NLY+KNLDD+IDDE+
Sbjct: 243 LHGKESPEGKTYYVGRAQKKAERQQELKRKFEQYKIERMNRYQGVNLYVKNLDDTIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS FG+ITS KVM D G S+G GFV FS+PEEA++A+ +MNG++V +KPLYVALA
Sbjct: 303 LRKEFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYVALA 361
Query: 382 QRKEDRRARLQVCLLQ 397
QRKEDR+A L LQ
Sbjct: 362 QRKEDRKAHLDSQYLQ 377
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/399 (56%), Positives = 301/399 (75%), Gaps = 12/399 (3%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
MA A G A A +SLYVGDL+ +VT++QL+++F+Q+G V S+RVCRD
Sbjct: 1 MATTTANGGAAVPEAAAATPVHNSSLYVGDLDRDVTEAQLFEIFSQIGPVASIRVCRDAV 60
Query: 61 TRRSLGYGYVNFSNAQEAARALEM---LNFTPL--------NGKPIRVMYSHRDPSLRKS 109
TRRSLGY YVN+++A +AA A LN+T + + KP+R+M+SHRDP+ RKS
Sbjct: 61 TRRSLGYAYVNYNSALDAAAAERAIEALNYTSVIPGKEGGEDSKPMRIMWSHRDPAFRKS 120
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
G GNIFIKNLDK ID+KALHDTF+AFG ILSCKVATDL G SKGYGFV ++ EE+AQ AI
Sbjct: 121 GVGNIFIKNLDKDIDNKALHDTFTAFGTILSCKVATDLAGNSKGYGFVHYEKEEAAQLAI 180
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
EK+NGMLL K+V+VG FL++ ER + + +TNV+VKNLSE+ T+E+++K F E+G +
Sbjct: 181 EKVNGMLLEGKKVFVGPFLKRTERPVD-KEQHYTNVFVKNLSENLTDEEVEKMFNEHGMV 239
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
TS +M+D GKSK FGF+NFE+++ A AV ALNGK+ D KE Y G+AQKK+ERE ELK
Sbjct: 240 TSFAIMKDEAGKSKGFGFINFEDAEGAHAAVTALNGKEIDGKELYCGRAQKKAEREAELK 299
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+F++ +E K+QG NLY+KNL D +DD++L+ F+P G+ITS KVM+D +G S+G G
Sbjct: 300 QKFDEVRQERIAKYQGMNLYVKNLVDEVDDDQLRAEFAPHGTITSAKVMKDSAGKSKGFG 359
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
FV +S+PEEA+RA+ EMNGKM++ KP+YVALAQR+E RR
Sbjct: 360 FVCYSSPEEATRAVTEMNGKMLLGKPMYVALAQRREVRR 398
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/379 (56%), Positives = 287/379 (75%), Gaps = 3/379 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LFN +G V S+RVCRD TRRSLGY YVNF N ++ +AL
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN+T + G+P R+M+S RDPSLRK G GN+FIKNLD AID+KALHDTFSAFG ILSCK
Sbjct: 139 DELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCK 198
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G +KGYGFV FD+ ESA AIE +NGMLLNDK+VYVGH + ++ER +++ K+
Sbjct: 199 VAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKA 258
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+KNL TE++ FG++G ITS +++D + K + FGFVN+ N + A +AV
Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAV 318
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K++ K+ YVG+AQKK ERE EL+ ++EQ E +K+QG NL+IKNL D +DDE
Sbjct: 319 DELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDE 378
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+LK FS FG+ITS K+M D G S+G GFV ++TPEEA++A+ EMN +M+ KPLYVAL
Sbjct: 379 RLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438
Query: 381 AQRKEDRRARLQVCLLQCR 399
AQRKE RR++L+ +Q R
Sbjct: 439 AQRKEVRRSQLE-AQIQAR 456
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 19/292 (6%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+ GT ++++ +L+ + + L+D F+ G+++S +V D + GYG+V+F + + A
Sbjct: 164 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESAN 222
Query: 80 RALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFS 133
A+E +N LN K + V + S R+ + K+ N++IKNLD I + D F
Sbjct: 223 AAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFG 282
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FG I S + D N + +G+GFV + N E AQKA+++LN K++YVG +K ER
Sbjct: 283 QFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER 342
Query: 194 DTEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+ E+ NK + N+++KNL + +E L+ F +GTITSA +M D GK
Sbjct: 343 EEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK 402
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
SK FGFV + ++A +AV +N + K YV AQ+K R +L+ Q +
Sbjct: 403 SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQ 454
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N++ +L++ +L+ V D +L F+ G + S ++ D +S G+G+V ++ +EA
Sbjct: 359 NKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEA 417
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N L GKP+ V + R
Sbjct: 418 NKAVTEMNQRMLAGKPLYVALAQR 441
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/382 (59%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL +VT++ LY+ F+ GQ++S+RVCRD T++SLGY YVNFS EA R
Sbjct: 9 FPLTSLYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAER 68
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
L+ +NF L GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++DTFSAFGNILS
Sbjct: 69 VLDTMNFDLLKGKPIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGNILS 128
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK- 199
CKVA D +G SKGYGFV F++ E+A KAIEK+NGMLLN K+VYVG F+ + ER+ EI +
Sbjct: 129 CKVAIDDDGVSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAEREKEIGEK 188
Query: 200 -SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
K+TNVYVKN + T+E L F YGTITS VVM + DG SK FGF+ FE + A +
Sbjct: 189 SKKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPDGTSKGFGFIAFEEPESAEK 248
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV +N + + YVG+AQKKSER ELK +EQ E ++ QGAN+YIKNLDD+ D
Sbjct: 249 AVTEMNNYELNGTNLYVGRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDDTFD 308
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
+++L++ FS FG+ITS KVM + G S+G GFV FSTPEEAS+A+ EM+G+M+ SKP+YV
Sbjct: 309 NDRLRKEFSQFGAITSAKVMTE-GGRSKGFGFVCFSTPEEASKAITEMDGRMIGSKPIYV 367
Query: 379 ALAQRKEDRRARLQV-CLLQCR 399
ALAQR EDRRA L C+ + R
Sbjct: 368 ALAQRYEDRRAYLSAQCMQRIR 389
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 18/208 (8%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV + N+T QLYDLF G + S V + S G+G++ F + A +A+
Sbjct: 193 TNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMAN-PDGTSKGFGFIAFEEPESAEKAVT 251
Query: 84 MLNFTPLNGKPIRV----MYSHRDPSLRKS------------GAGNIFIKNLDKAIDHKA 127
+N LNG + V S R L+K N++IKNLD D+
Sbjct: 252 EMNNYELNGTNLYVGRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDDTFDNDR 311
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L FS FG I S KV T+ G+SKG+GFV F E A KAI +++G ++ K +YV
Sbjct: 312 LRKEFSQFGAITSAKVMTE-GGRSKGFGFVCFSTPEEASKAITEMDGRMIGSKPIYVALA 370
Query: 188 LRKQERDTEINKSKFTNVYVKNLSESTT 215
R ++R ++ + + +S T
Sbjct: 371 QRYEDRRAYLSAQCMQRIRHQTMSPPLT 398
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N+ ++Y+ +L+ + +L F+Q G + S +V + RS G+G+V FS +EA
Sbjct: 291 NRIQGANVYIKNLDDTFDNDRLRKEFSQFGAITSAKVMTEGG--RSKGFGFVCFSTPEEA 348
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
++A+ ++ + KPI V + R
Sbjct: 349 SKAITEMDGRMIGSKPIYVALAQR 372
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/378 (56%), Positives = 290/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+++ + SLYVGDL A+VT++ LY+ F+ +G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASSSGYPLASLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ AI +NGMLLND +V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFKSRREREV 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ+ F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ +++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRKEFSPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 170/306 (55%), Gaps = 24/306 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LEA++ + LYD F+ G ++S +V D R G+G+V+F + A A
Sbjct: 97 GVGNIFIKNLEASIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQHA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSL----RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + V + S R+ + R NI++KNL +D + L + FS F
Sbjct: 155 INTMNGMLLNDHKVFVGHFKSRREREVELGARAMEFTNIYVKNLQADVDEQGLQELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D +G S+G+GFV F+ E AQKA+ +NG ++ + +YVG ++ ER
Sbjct: 215 GKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYVGRAQKRVERQN 274
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + N+YVKNL +S +E L+K F YG ITSA VM +G G SK
Sbjct: 275 ELKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGMITSAKVMTEG-GHSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ---NMKEAA 300
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M+
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRALG 393
Query: 301 DKFQGA 306
F G+
Sbjct: 394 SPFLGS 399
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 158/282 (56%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS +V D+ +S GY ++ F A++A++
Sbjct: 11 ASLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ + + + +RD + KS N+++KNL S + L +F +G I
Sbjct: 71 TMNFEMIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G S+ FGFV+FE + A A+ +NG +D + +VG + + ERE+EL
Sbjct: 127 SCKVACDEHG-SRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFKSRREREVEL-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+Y+KNL +D++ L++LFS FG + S KVMRD SG SRG GF
Sbjct: 184 --------GARAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V F T EEA +A++ MNGK V + LYV AQ++ +R+ L+
Sbjct: 236 VNFETHEEAQKAVVHMNGKEVSGRLLYVGRAQKRVERQNELK 277
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M ++ + A+LY+ +L + + L + FSP G I S +V RD + S G ++ F
Sbjct: 1 MNASSSGYPLASLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN +M+ +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFEMIKGQPIRIMWSQRDPGLR 94
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/375 (57%), Positives = 289/375 (77%), Gaps = 3/375 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVNF NA + RA+E
Sbjct: 45 TSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 104
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + +P R+M+S RDP+LR++G GNIFIKNLD ID+KALHDTF+AFGNILSCKV
Sbjct: 105 QLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKV 164
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--K 201
AT+ G S GYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + ++ER +I +S K
Sbjct: 165 ATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRAK 223
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVY KN+ T+E +K F YG ITS V+ RD DGKSK FGFVNFE+ ++A +AV+
Sbjct: 224 FTNVYCKNVDPEVTDEQFEKLFTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVD 283
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+ F ++ +V +AQKKSERE EL+ +E E KFQG NLY+KN+ +S DDE+
Sbjct: 284 ELHDSDFHGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDER 343
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F+PFG+ITSCK+MR PSG+SRG GFV +S PEEA++A+ EMNGKM+ ++PLYVALA
Sbjct: 344 LREEFAPFGTITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALA 403
Query: 382 QRKEDRRARLQVCLL 396
QRK+ RR +L+ ++
Sbjct: 404 QRKDVRRQQLEAQIM 418
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+F +LY+ ++ + D +L + F G + S ++ R S S G+G+V +S +EA
Sbjct: 324 KFQGVNLYLKNIPESYDDERLREEFAPFGTITSCKIMRAPSGV-SRGFGFVCYSVPEEAN 382
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N L+ +P+ V + R
Sbjct: 383 KAVSEMNGKMLDNRPLYVALAQR 405
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/384 (56%), Positives = 287/384 (74%), Gaps = 9/384 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N +G G + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y
Sbjct: 2 NASGPG-----YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNLD +ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D NG S+GYGFV F+ E+A +AI +NGMLLND++V+VG+F
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN E + E LQ++F +G S VM D G+SK FGF
Sbjct: 176 RREREAEYGAKAMEFTNVYIKNFGEEMSNERLQETFSIFGKTLSVKVMTDNIGRSKGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VNFE DA +AVE +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E ++QG N
Sbjct: 236 VNFEKHQDAQKAVEDMNGKEINGRMLYVGRAQKRMERQSELKRKFEQIKQERVSRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDDE+L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARL 391
G++V +KPLYVALAQRKE+R+A L
Sbjct: 355 GRIVSTKPLYVALAQRKEERKAIL 378
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 172/297 (57%), Gaps = 29/297 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + R GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSR--GYGFVHFETHEAANRA 154
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V S R+ R++ G N++IKN + + ++ L +TF
Sbjct: 155 IATMNGMLLNDRKVFVGNFKSRRE---REAEYGAKAMEFTNVYIKNFGEEMSNERLQETF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG LS KV TD G+SKG+GFV F+ + AQKA+E +NG +N + +YVG ++ E
Sbjct: 212 SIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVEDMNGKEINGRMLYVGRAQKRME 271
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R +E+ K KF N+YVKNL + +E L+K F YGTITSA VM +G
Sbjct: 272 RQSEL-KRKFEQIKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG- 329
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 161/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G I+S +V D+ +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRI----MWSQRDPGLRKSGVGNIFIKNLDDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D +G S+ +GFV+FE + A RA+ +NG +D++ +VG +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE E A + N+YIKN + + +E+L++ FS FG S KVM D
Sbjct: 176 RREREAEY----------GAKAMEFTNVYIKNFGEEMSNERLQETFSIFGKTLSVKVMTD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G S+G GFV F ++A +A+ +MNGK + + LYV AQ++ +R++ L+
Sbjct: 226 NIGRSKGFGFVNFEKHQDAQKAVEDMNGKEINGRMLYVGRAQKRMERQSELK 277
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/369 (58%), Positives = 286/369 (77%), Gaps = 4/369 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RV RD+ TRRSLGY VNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLR+SG GN+FIKNL+K ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
+D NG SKG+GFV F+ EE+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +F
Sbjct: 132 SDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN + +E L FG +G I S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K YVG+AQKK +R ELKH+FEQ ++ + ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 QKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERQAHL 378
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 170/307 (55%), Gaps = 23/307 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + LYD F+ G ++S +V D + S G+G+V+F + A RA
Sbjct: 97 GVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG--SKGHGFVHFETEEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + + + G G N++IKN +D + L+ F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G ILS KV TD G+SKG+GFV F+ E AQKA++++NG LN K +YVG +K +R T
Sbjct: 215 GQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E LQK F +GTITS VM +G G+S
Sbjct: 275 EL-KHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQRMASVRSG 392
Query: 303 FQGANLY 309
N Y
Sbjct: 393 PNPVNPY 399
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 160/282 (56%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS+ G ILS +V D + +S GY V F+ A++A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K V + +RD + +S NV++KNL+++ + L +F +G I
Sbjct: 71 TMNFDVIKGKPVRI----MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELG- 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+F N+YIKN D +DDE L LF FG I S KVM D G S+G GF
Sbjct: 185 -------TGTKEF--TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F E+A +A+ EMNGK + K +YV AQ+K+DR L+
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELK 277
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 208/377 (55%), Positives = 290/377 (76%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ V+++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 48 SASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 107
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD+AID+KALHDTF+AFGN+LSCK
Sbjct: 108 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCK 167
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + K+ER ++++ ++
Sbjct: 168 VATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISKKERQSKLDEIRA 227
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTN+YVKNL + E+ + F ++G +TSAV+ D +G SK FGFVNFE ++A AV
Sbjct: 228 QFTNIYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAV 287
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ L+ +++ ++ +V +AQKK+ERE EL+ +E E K+QG NLYIKNLDD IDDE
Sbjct: 288 DGLHDTEYNGRKLFVSRAQKKAEREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDE 347
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F PFG+ITS KVMRD G S+G GFV FS+P+EA++A+ EMN KM+ +KPLYV+L
Sbjct: 348 RLRAEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSL 407
Query: 381 AQRKEDRRARLQVCLLQ 397
AQR+E RR +L+ + Q
Sbjct: 408 AQRREVRRQQLESQIAQ 424
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 17/194 (8%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
S ++YV L + +E L + F G + S V RD +S + +VN+ N+ D
Sbjct: 45 PSPSASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGE 104
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RA+E LN + + +Q+ A K N++IKNLD++I
Sbjct: 105 RALEQLNYSLIKGRACRIMWSQRDP----------------ALRKTGQGNIFIKNLDEAI 148
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++ L F+ FG++ SCKV D G S+G GFV + T E A A+ +NG ++ K +Y
Sbjct: 149 DNKALHDTFAAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVY 208
Query: 378 VALAQRKEDRRARL 391
V K++R+++L
Sbjct: 209 VGHHISKKERQSKL 222
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+++ +LY+ +L+ + D +L F G + S +V RD S G+G+V FS+ EA
Sbjct: 328 SKYQGVNLYIKNLDDEIDDERLRAEFEPFGTITSAKVMRD-EKGSSKGFGFVCFSSPDEA 386
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 387 TKAVAEMNNKMIGAKPLYVSLAQR 410
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/372 (57%), Positives = 283/372 (76%), Gaps = 2/372 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LFN +G V S+RVCRD TRRSLGY YVNF N ++ +AL
Sbjct: 65 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 124
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN+T + G+P R+M+S RDPSLRK G GN+FIKNLD AID+KALHDTFSAFG ILSCK
Sbjct: 125 DELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCK 184
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G +KGYGFV FD+ ESA AIE +NGMLLNDK+VYVGH + ++ER +++ K+
Sbjct: 185 VAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKA 244
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+KNL TE++ FG++G ITS +++D + K + FGFVN+ N + A +AV
Sbjct: 245 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAV 304
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K++ K+ YVG+AQKK ERE EL+ +EQ E +K+QG NL+IKNL D +DDE
Sbjct: 305 DELNDKEYKGKKLYVGRAQKKHEREEELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDDE 364
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+LK FS FG+ITS K+M D G S+G GFV ++TPEEA++A+ EMN +M+ KPLYVAL
Sbjct: 365 RLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 424
Query: 381 AQRKEDRRARLQ 392
AQRKE RR++L+
Sbjct: 425 AQRKEVRRSQLE 436
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 19/292 (6%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+ GT ++++ +L+ + + L+D F+ G+++S +V D + GYG+V+F + + A
Sbjct: 150 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESAN 208
Query: 80 RALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFS 133
A+E +N LN K + V + S R+ + K+ N++IKNLD I + D F
Sbjct: 209 AAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFG 268
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FG I S + D N + +G+GFV + N E AQKA+++LN K++YVG +K ER
Sbjct: 269 QFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER 328
Query: 194 DTEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+ E+ NK + N+++KNL + +E L+ F +GTITSA +M D GK
Sbjct: 329 EEELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK 388
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
SK FGFV + ++A +AV +N + K YV AQ+K R +L+ Q +
Sbjct: 389 SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQ 440
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N++ +L++ +L+ V D +L F+ G + S ++ D +S G+G+V ++ +EA
Sbjct: 345 NKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEA 403
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N L GKP+ V + R
Sbjct: 404 NKAVTEMNQRMLAGKPLYVALAQR 427
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 210/378 (55%), Positives = 288/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD +ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG S+GYGFV F+ E+A +AIE +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN + ++ L++ F +G S VM D +G+SK FGFVNFE
Sbjct: 182 EVGARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG NLY+KNL
Sbjct: 242 EEAQKAVADMNGKEINGRLLYVGRAQKRLERQSELKRKFEQMKQERVNRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPYGTITSAKVMTE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 168/293 (57%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + R GYG+V+F + A RA
Sbjct: 97 GVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSR--GYGFVHFETHEAATRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D L + FS F
Sbjct: 155 IETMNGMLLNDRKVFVGHFKSRKEREAEVGARAIEFTNVYIKNFGDDMDDDRLREIFSRF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV F+ E AQKA+ +NG +N + +YVG ++ ER +
Sbjct: 215 GKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQKRLERQS 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E +N+ + N+YVKNL + +E L+K F YGTITSA VM +G G+SK
Sbjct: 275 ELKRKFEQMKQERVNRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 165/289 (57%), Gaps = 20/289 (6%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG G ++++ +L + L++ FS G I+S +V D+ +S GY ++ F
Sbjct: 4 SGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N ++ + + + +RD + KS NV++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V+ D +G S+ +GFV+FE + A RA+E +NG +D++ +VG + + E
Sbjct: 120 SAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE E+ A + N+YIKN D +DD++L+++FS FG S KVM D +G
Sbjct: 179 REAEV----------GARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S+G GFV F EEA +A+ +MNGK + + LYV AQ++ +R++ L+
Sbjct: 229 RSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQKRLERQSELK 277
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 218/380 (57%), Positives = 287/380 (75%), Gaps = 5/380 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLY+GDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A R
Sbjct: 8 YPMASLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKPIR+M+S RDPSLR+SG GNIFIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVVKGKPIRIMWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKV D NG SKGYGFV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEFGAK 186
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEY-GTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+FTNVY+KN + +E L++ F +Y G S VM D GKSK FGFV+FE +DA
Sbjct: 187 AREFTNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQ 246
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AV+ +N K+ + + YVG+AQKK+ER+ ELK +FE +E K+QG NLY+KNLDD+I
Sbjct: 247 KAVDEMNTKELNGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQGVNLYVKNLDDNI 306
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
+DE+L + FSPFG+ITS KVM + G SRG GFV FS+PEEA++A+ EMNG+++ SKPLY
Sbjct: 307 NDERLWKEFSPFGTITSAKVMME-EGRSRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLY 365
Query: 378 VALAQRKEDRRARLQVCLLQ 397
VALAQRKE+R+ L +Q
Sbjct: 366 VALAQRKEERKMHLTSQFMQ 385
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 169/294 (57%), Gaps = 22/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A +A
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + F +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAEFGAKAREFTNVYIKNFGDDMDDERLREYFEQY 214
Query: 136 -GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G LS KV D G+SKG+GFV F+ E AQKA++++N LN + +YVG +K ER
Sbjct: 215 VGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAIYVGRAQKKAERQ 274
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
TE+ + SK+ N+YVKNL ++ +E L K F +GTITSA VM + +G+S
Sbjct: 275 TELKRKFEMLKQERMSKYQGVNLYVKNLDDNINDERLWKEFSPFGTITSAKVMME-EGRS 333
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+ FGFV F + ++A +AV +NG+ K YV AQ+K ER++ L QF Q +
Sbjct: 334 RGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEERKMHLTSQFMQRL 387
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M A + A+LYI +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPAGPSYPMASLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN +V KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLR 94
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/377 (55%), Positives = 288/377 (76%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ V+++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 51 SASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERAL 110
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD AID+KALHDTF+AFGN+LSCK
Sbjct: 111 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDDAIDNKALHDTFAAFGNVLSCK 170
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + K++R +++ K
Sbjct: 171 VATDEMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHVSKKDRQAKLDEQKK 230
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVYVKN+ +++ ++ F +G +TSAV+ RD +G+S+ FGFVNFE ++A +AV
Sbjct: 231 QFTNVYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAV 290
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ L+ F ++ +V +AQKKSERE EL+ +EQ E K+QG NLYIKNL+D +DDE
Sbjct: 291 DTLHDSDFKGRKLFVSRAQKKSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDE 350
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+ F PFG+ITS KVMR G S+G GFV FS+P+EA++A+ EMN KM+ SKPLYV+L
Sbjct: 351 KLRDAFEPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLYVSL 410
Query: 381 AQRKEDRRARLQVCLLQ 397
AQR+E RR +L+ + Q
Sbjct: 411 AQRREVRRQQLESQIAQ 427
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+++ +LY+ +LE +V D +L D F G + S +V R S G+G+V FS+ EA
Sbjct: 331 SKYQGVNLYIKNLEDDVDDEKLRDAFEPFGAITSAKVMR-TEGGTSKGFGFVCFSSPDEA 389
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 390 TKAVAEMNNKMMGSKPLYVSLAQR 413
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/378 (56%), Positives = 288/378 (76%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ+ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 167/297 (56%), Gaps = 29/297 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + S R+ R++ G NI++KNL +D + L + F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRE---REAELGARALEFTNIYVKNLPVDVDEQGLQELF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ E
Sbjct: 212 SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVE 271
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G
Sbjct: 272 RQNEL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG- 329
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 162/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L++LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELK 277
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/369 (58%), Positives = 286/369 (77%), Gaps = 2/369 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+LE V+++ LYD+F+ +G V S+RVCRD T SLGY YVNF + + +A+E
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN+T + GKP R+M+S RDPSLRK G+GNI+IKNL AID+K+LH+TFS FGNILSCKVA
Sbjct: 99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
TD NG S+G+GFV F+NE A+ AIE ++GML+ND++VYV + K++R +++ K+KF
Sbjct: 159 TDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKF 218
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN+ + T++E+ ++ FG+YG ITSAV+ +D +GK + FGFVNFE+ AA+AV+
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN +F ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLDDSIDDEKL
Sbjct: 279 LNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKL 338
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K+ F+PFG+ITS KVMRD +G SRG GFV FSTPEEA++A+ E N ++V KPLYVA+AQ
Sbjct: 339 KEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 383 RKEDRRARL 391
RKE RR +L
Sbjct: 399 RKEVRRNQL 407
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 155/290 (53%), Gaps = 16/290 (5%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P + SGA ++++ L+ + L+D FS G++ S +V D + S GY +V F +
Sbjct: 31 PKVETSGA-SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDH 89
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
E+ KAIE+LN L+ K + +RD + K N+Y+KNL + + L ++
Sbjct: 90 EAGPKAIEQLNYTLIKGKPCRI----MWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHET 145
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V D +G S+ FGFV+FEN DA A+EA++G +D+E YV K
Sbjct: 146 FSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKK 205
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
+R+ +L+ E KF N+Y+KN+D E+ ++LF +G ITS + +D
Sbjct: 206 DRQSKLE--------EVKAKF--TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSE 255
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G RG GFV F A++A+ E+N + LYV AQ+K +R L+
Sbjct: 256 GKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELK 305
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 158/290 (54%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++Y+ +L + + L++ F+ G ++S +V D S G+G+V+F N +A A
Sbjct: 124 GSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDA 182
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E ++ +N + + V S +D + K+ N+++KN+D+ + + F +
Sbjct: 183 IEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKY 242
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + D G+ +G+GFV F++ +A KA+++LN + +++YVG +K ER
Sbjct: 243 GKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQ 302
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K +K+ N++VKNL +S +E L++ F +GTITSA VMRD G S+
Sbjct: 303 ELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSR 362
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 363 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQQIQ 412
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 17/202 (8%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNF 250
E +T ++ ++YV L + +E L F G+++S V RD S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
+ + +A+E LN K + S+R+ L+ K N+YI
Sbjct: 87 HDHEAGPKAIEQLNYTLIKGKPCRI----MWSQRDPSLR------------KKGSGNIYI 130
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNL +ID++ L + FS FG+I SCKV D +G+SRG GFV F +A A+ ++G +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGML 190
Query: 371 VVSKPLYVALAQRKEDRRARLQ 392
+ + +YVAL K+DR+++L+
Sbjct: 191 MNDQEVYVALHVSKKDRQSKLE 212
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/379 (57%), Positives = 292/379 (77%), Gaps = 4/379 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+ G V+S+RVCRDL TRRSLGY YVNF +A R
Sbjct: 9 YPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAER 68
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + G+PIR+M+S RDPSLRKSG GNIFIKNLDK ID+KAL+DTFSAFGNILS
Sbjct: 69 ALDTMNFDAIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKNIDNKALYDTFSAFGNILS 128
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CK+A D NG S GYGFV F+ EE+A+ +IEK+NGMLLN K+V+VG F+ ++ER +
Sbjct: 129 CKIAMDQNG-SLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFVGRFMSRKERLEMLGDK 187
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
KFTNVYVKNL+E+ ++ L++ F +G I SA +M +G+ + FGFV+F++ + AA+
Sbjct: 188 AKKFTNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAK 247
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AVE LN K+ + KE YVG+AQKK+ER+ ELK +FE+ E +++QG NLY+KNLD+ ID
Sbjct: 248 AVEELNNKEVEGKEIYVGRAQKKAERQAELKEKFERMKMERINRYQGVNLYVKNLDEQID 307
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FS FG+ITS +VM + G ++G GFV FS+PEEA++A+ EMNG++VV+KPLYV
Sbjct: 308 DERLRKEFSQFGTITSARVMTE-GGRTKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYV 366
Query: 379 ALAQRKEDRRARLQVCLLQ 397
ALAQRKEDR+A L +Q
Sbjct: 367 ALAQRKEDRKAHLAAQYMQ 385
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 174/304 (57%), Gaps = 21/304 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + LYD F+ G ++S ++ D + SLGYG+V+F + A +
Sbjct: 98 GVGNIFIKNLDKNIDNKALYDTFSAFGNILSCKIAMDQNG--SLGYGFVHFETEEAARNS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R L G N+++KNL++ +D K L + F F
Sbjct: 156 IEKVNGMLLNGKKVFVGRFMSRKERLEMLGDKAKKFTNVYVKNLNETMDDKKLREMFEVF 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I+S K+ GQ +G+GFV FD+ E+A KA+E+LN + K++YVG +K ER
Sbjct: 216 GKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQA 275
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E IN+ + N+YVKNL E +E L+K F ++GTITSA VM +G G++K
Sbjct: 276 ELKEKFERMKMERINRYQGVNLYVKNLDEQIDDERLRKEFSQFGTITSARVMTEG-GRTK 334
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q + +
Sbjct: 335 GFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQRKEDRKAHLAAQYMQRIAGMRMQG 394
Query: 304 QGAN 307
QG N
Sbjct: 395 QGVN 398
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N++ +LYV +L+ + D +L F+Q G + S RV + R+ G+G+V FS+ +EA
Sbjct: 290 NRYQGVNLYVKNLDEQIDDERLRKEFSQFGTITSARVMTEGG--RTKGFGFVCFSSPEEA 347
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 348 TKAVTEMNGRIVVAKPLYVALAQR 371
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/373 (57%), Positives = 286/373 (76%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TRRS Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S DPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-K 199
CKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ K
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 200 SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+K F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAYL 378
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 172/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG L+ KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E L+K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRKFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 162/291 (55%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL +S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + + D + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPVRIMW----SQHDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAEL----------GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELK 277
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+R S +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRRSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P++A AL MN ++ KP+ + +Q R
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPVRIMWSQHDPSLR 94
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/427 (51%), Positives = 294/427 (68%), Gaps = 47/427 (11%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+ANQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 104 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAF 163
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R +
Sbjct: 164 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 223
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTNVY+KN+ + T+E+ +K F ++G ITSA + RD +GKS+ FGFVNF
Sbjct: 224 KFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTH 283
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
D A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 284 DSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 343
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPS------------------------------- 342
D +DDEKL++LFSPFG+ITS KVMRD
Sbjct: 344 TDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPK 403
Query: 343 --------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ RR
Sbjct: 404 ESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 463
Query: 389 ARLQVCL 395
++L+ +
Sbjct: 464 SQLEASI 470
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/373 (57%), Positives = 286/373 (76%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TRRS Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S DPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-K 199
CKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ K
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 200 SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+K F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAYL 378
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 172/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG L+ KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E L+K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 162/291 (55%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL +S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + + D + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPVRIMW----SQHDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAEL----------GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELK 277
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+R S +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRRSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P++A AL MN ++ KP+ + +Q R
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPVRIMWSQHDPSLR 94
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/378 (56%), Positives = 287/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 167/297 (56%), Gaps = 29/297 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + S R+ R++ G NI++KNL +D + L D F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRE---REAELGARALEFTNIYVKNLPVDVDEQGLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ E
Sbjct: 212 SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVE 271
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G
Sbjct: 272 RQNEL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG- 329
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELK 277
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/373 (56%), Positives = 286/373 (76%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F++ G ++S+RVCRD+ TRR Y YVNF + ++A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHPKDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLR+SG GNIF+KNLDK+I++K L+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTASAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAHL 378
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 172/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKVLYDTASAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E L+K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNEYMQRM 386
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 165/291 (56%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + + Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A++A++ +N ++ K V + +RD + +S N++VKNL +S + L
Sbjct: 62 PKDAERALDTMNFDVIKGKPVRIMW----SQRDPSLRRSGVGNIFVKNLDKSINNKVLYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TASAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/373 (57%), Positives = 288/373 (77%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F++ G ++S+RVCRD+ TRRS Y YVNF + ++A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLR+SG GNIF+KNLDK+I++K L+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-K 199
CKV D NG SKGYGFV F+ E+A++AIEK+NG LLND++V+VG F ++ER+ E+ K
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 200 SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+K F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDARK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAHL 378
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 173/293 (59%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N T LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A+KA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E L+K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 164/291 (56%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A++A++ +N ++ K V + +RD + +S N++VKNL +S + L
Sbjct: 62 PKDAERALDTMNFDVIKGKPVRIMW----SQRDPSLRRSGVGNIFVKNLDKSINNKVLYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAEL----------GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/378 (56%), Positives = 287/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 167/297 (56%), Gaps = 29/297 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + S R+ R++ G NI++KNL +D + L D F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRE---REAELGARALEFTNIYVKNLPVDVDEQGLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ E
Sbjct: 212 SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVE 271
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G
Sbjct: 272 RQNEL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG- 329
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELK 277
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 207/374 (55%), Positives = 289/374 (77%), Gaps = 2/374 (0%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ N + RALE L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N++ + + R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN+LSCKVAT
Sbjct: 106 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVAT 165
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFT 203
D +G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVG+ + ++ER ++++ K++FT
Sbjct: 166 DEHGRSKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLDEMKAQFT 225
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+Y+KNL S T+++ ++ F +YG +TSA+V D +G SK FGFVN+E+ ++A AV+AL
Sbjct: 226 NLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYEHHEEAQSAVDAL 285
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ K+ +V +AQKK+ERE EL+ +EQ E K+QG NLYIKNL+D +DDEKL+
Sbjct: 286 HDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDEKLR 345
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F PFG+ITSCKVMRD S+G GFV FS+P+EA++A+ EMN KM+ SKPLYV+LAQR
Sbjct: 346 AEFEPFGTITSCKVMRDDKSTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQR 405
Query: 384 KEDRRARLQVCLLQ 397
+E RR +L+ + Q
Sbjct: 406 REVRRQQLESQIAQ 419
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+++ +LY+ +LE +V D +L F G + S +V RD S G+G+V FS+ EA
Sbjct: 323 SKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRD-DKSTSKGFGFVCFSSPDEA 381
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 382 TKAVAEMNNKMIGSKPLYVSLAQR 405
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/377 (56%), Positives = 287/377 (76%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ N Q+ RAL
Sbjct: 37 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERAL 96
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + + R+M+S RDP+LRK+G GNIFIKNLD+AID+KALHDTF+AFGN+LSCK
Sbjct: 97 EQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCK 156
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD NG S+GYGFV ++N ESA AI+ +NGMLLNDK+VYVGH + K+ER +I+ KS
Sbjct: 157 VATDENGNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQAKIDEQKS 216
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNV++KNL S +E ++ YG I SAVV +D G S+ FGFVN++N ++AA+AV
Sbjct: 217 QFTNVFIKNLDVSVDDEKFKQILEPYGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAV 276
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E+LN + D K+ + +AQKK+ERE EL+ +EQ E K+ G NLY+KNLDD DDE
Sbjct: 277 ESLNEVEVDGKKIFAARAQKKNEREEELRRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDE 336
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L F PFG+ITS K+MRD G S+G GFV FS+P+EA++A+ E++GKM+ SKPLYV+L
Sbjct: 337 RLVGEFEPFGTITSAKIMRDEKGTSKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSL 396
Query: 381 AQRKEDRRARLQVCLLQ 397
AQR++ RR +L+ + Q
Sbjct: 397 AQRRDVRRQQLESQIAQ 413
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ +LYV +L+ + D +L F G + S ++ RD S G+G+V FS+ EA
Sbjct: 318 KYAGVNLYVKNLDDDFDDERLVGEFEPFGTITSAKIMRD-EKGTSKGFGFVCFSSPDEAT 376
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
+A+ L+ + KP+ V + R
Sbjct: 377 KAVSELSGKMIGSKPLYVSLAQR 399
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/373 (57%), Positives = 287/373 (76%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F++ G ++S+RVCRD+ TRRS Y YVNF + ++A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLR+SG GNIF+KNLDK+I++K L+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-K 199
CKV D NG SKGYGFV F+ E+A++AIEK+NG LLND++V+VG F ++ER+ E+ K
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 200 SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+K F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAHL 378
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 172/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N T LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN K +YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E L+K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNEYMQRM 386
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 164/291 (56%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A++A++ +N ++ K V + +RD + +S N++VKNL +S + L
Sbjct: 62 PKDAERALDTMNFDVIKGKPVRIMW----SQRDPSLRRSGVGNIFVKNLDKSINNKVLYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAEL----------GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELK 277
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/381 (57%), Positives = 282/381 (74%), Gaps = 4/381 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+ G V+S+RVCRD TRRSLGY YVNF +A R
Sbjct: 16 YPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAER 75
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKPIR+M+S RDPS+R+SGAGNIFIKNLDK+ID+KA++DTFS FGNILS
Sbjct: 76 ALDTMNFDVMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILS 135
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D SKGYGFV F+ EESAQKAIEK+NGMLL K+VYVG F + R E+ ++
Sbjct: 136 CKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRAARMREMGET 195
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNV++KN ++ +E L+K F ++G ITS VM D DGKSK FGFV FEN +DA +
Sbjct: 196 ARRFTNVFIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEK 255
Query: 259 AVEALNGKKFDDKE--WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
AV ++ + D E YV +AQKK+ER ELK ++EQ E ++QG NLY+KNLDD+
Sbjct: 256 AVNEMHEYQLPDSERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDT 315
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+DDE L+Q F +G ITS KVM D +G S+G GFV F P+EA++A+ EMNGKM+ +KPL
Sbjct: 316 VDDEVLRQNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPL 375
Query: 377 YVALAQRKEDRRARLQVCLLQ 397
YVALAQRKEDR+A+L +Q
Sbjct: 376 YVALAQRKEDRKAQLASQYMQ 396
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 170/295 (57%), Gaps = 21/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S +V D + S GYG+V+F + A +A
Sbjct: 105 GAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESN-SKGYGFVHFETEESAQKA 163
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+E +N L GK + V + R +R+ G N+FIKN +D + L F+ F
Sbjct: 164 IEKVNGMLLEGKKVYVGKFQPRAARMREMGETARRFTNVFIKNFADELDKEKLEKLFAKF 223
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND--KQVYVGHFLRKQER 193
G I SC V +D +G+SKG+GFV F+N E A+KA+ +++ L D +++YV +K ER
Sbjct: 224 GKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEMHEYQLPDSERKLYVCRAQKKNER 283
Query: 194 DTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ + + N+YVKNL ++ +E L+++F YG ITSA VM D +G+
Sbjct: 284 SAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVDDEVLRQNFESYGKITSAKVMCDDNGR 343
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV FE D+A +AV +NGK K YV AQ+K +R+ +L Q+ Q +
Sbjct: 344 SKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQRL 398
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 229/412 (55%), Positives = 297/412 (72%), Gaps = 29/412 (7%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVG+L ++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGNLHTDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNA----------------------QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK 108
NF Q A RAL+ +NF + G+PIR+M+S RDPSLRK
Sbjct: 58 NFQQPADVVVVGDGGSGGGGCGSGSGSQRAERALDTMNFDIIKGRPIRIMWSQRDPSLRK 117
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
SG GN+FIKNLDK ID+KA++DTFSAFGNILSCKV D +G SKGYGFV F+ EE+A K+
Sbjct: 118 SGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKS 177
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEY 226
IEK+NGMLLN K+VYVG F+ ++ER E+ K+K FTNVYVKN E T++ L++ F +Y
Sbjct: 178 IEKVNGMLLNGKKVYVGKFIPRKERQKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 237
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERE 285
GTITS VM DGKS+ FGFV FE+ + A +AV LNGK+ + K YVG+AQKK+ER+
Sbjct: 238 GTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAERQ 297
Query: 286 LELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS 345
ELK +FEQ E +++QG NLY+KNLDD+IDDE+L++ F+PFG+ITS KVM + G S
Sbjct: 298 QELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRS 356
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
+G GFV FS PEEA++A+ EMNG++V SKPLYVALAQRKEDR+A L +Q
Sbjct: 357 KGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQ 408
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 167/294 (56%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 119 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESGA-SKGYGFVHFETEEAANKS 177
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R ++ G N+++KN + + L + F +
Sbjct: 178 IEKVNGMLLNGKKVYVGKFIPRKERQKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 237
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ SA++A+ LNG + + K +YVG +K ER
Sbjct: 238 GTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAERQ 297
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL ++ +E L+K F +GTITSA VM + +G+S
Sbjct: 298 QELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRS 356
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 357 KGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRM 410
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/376 (56%), Positives = 280/376 (74%), Gaps = 2/376 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+L+ VT++ LY++F+ +G V S+RVCRD TRRSLGY YVN+ NA +A RALE
Sbjct: 57 TSLYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAERALE 116
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + K R+M+S RDPSLRK+G GNIFIKNLD+ ID+KALHDTF+AFG+ILSCKV
Sbjct: 117 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKV 176
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSK 201
A D G SKGYGFV + ESA+ AI+ +NGM LNDK V+VG + ++ER +I+ ++
Sbjct: 177 AMDSTGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVPRRERQAKIDEVRAH 236
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+Y+KNL T E+L + F +YG +TSA V D GK + FGFVN+EN + A++AVE
Sbjct: 237 FTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENHESASKAVE 296
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K + YV +AQK+ ER+ EL+ EQ E K+QG NLYIKNLDD DDEK
Sbjct: 297 ALHDKDYKGNILYVARAQKRVERDAELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDEK 356
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ F PFG+ITSCKVM+D G+SRG GFV FS P+EA++A+ EMNGKM+ SKPLYV+LA
Sbjct: 357 LQAEFLPFGTITSCKVMKDDKGVSRGFGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSLA 416
Query: 382 QRKEDRRARLQVCLLQ 397
QRK+ R+ +L+ + Q
Sbjct: 417 QRKDVRKQQLEAQMSQ 432
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 162/305 (53%), Gaps = 19/305 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V D ST S GYG+V++ A+ A A
Sbjct: 143 GQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVAMD-STGASKGYGFVHYVTAESAEAA 201
Query: 82 LEMLNFTPLNGK----PIRVMYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K I V R + + A N++IKNL + + L++ FS +
Sbjct: 202 IKGVNGMQLNDKVVFVGIHVPRRERQAKIDEVRAHFTNLYIKNLPTEVTTEELNEMFSKY 261
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G + S V D +G+ +G+GFV ++N ESA KA+E L+ +YV ++ ERD
Sbjct: 262 GPVTSAAVQADESGKHRGFGFVNYENHESASKAVEALHDKDYKGNILYVARAQKRVERDA 321
Query: 196 EINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ ++ + N+Y+KNL + +E LQ F +GTITS VM+D G S+
Sbjct: 322 ELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDEKLQAEFLPFGTITSCKVMKDDKGVSR 381
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
FGFV F D+A +AV +NGK K YV AQ+K R+ +L+ Q Q + + +
Sbjct: 382 GFGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSLAQRKDVRKQQLEAQMSQRAQMRSQQI 441
Query: 304 QGANL 308
A +
Sbjct: 442 AAAGI 446
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/378 (56%), Positives = 287/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 167/297 (56%), Gaps = 29/297 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + S R+ R++ G NI++KNL +D + L D F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRE---REAELGARALEFTNIYVKNLPVDVDEQGLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ E
Sbjct: 212 SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVE 271
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G
Sbjct: 272 RQNEL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG- 329
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELK 277
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/378 (56%), Positives = 287/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 167/297 (56%), Gaps = 29/297 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + S R+ R++ G NI++KNL +D + L D F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRE---REAELGARALEFTNIYVKNLPVDVDEQGLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ E
Sbjct: 212 SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVE 271
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G
Sbjct: 272 RQNEL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG- 329
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELK 277
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/378 (56%), Positives = 287/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 167/297 (56%), Gaps = 29/297 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + S R+ R++ G NI++KNL +D + L D F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRE---REAELGARALEFTNIYVKNLPVDVDEQGLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ E
Sbjct: 212 SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVE 271
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G
Sbjct: 272 RQNEL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG- 329
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELK 277
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/382 (55%), Positives = 294/382 (76%), Gaps = 3/382 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
NA+ TSLYVG+L+ +VT++ L+++F+ +G V S+RVCRD TRRSLGY YVNF NA
Sbjct: 40 NADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAA 99
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RA+E LN++ + +P R+M+S RDP+LR++G GNIFIKNLD ID+KALHDTF+AFG
Sbjct: 100 DGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFG 159
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVAT+ G S GYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + ++ER +
Sbjct: 160 NILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAK 218
Query: 197 INKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
I +++ FTNVY KN+ T+++ +K F ++G ITS V+ RD DGKSK FGFVNFE+ +
Sbjct: 219 IEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHN 278
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
+A +AV+ L+ F ++ +V +AQKKSERE EL+ +E E KFQG NLY+KN+
Sbjct: 279 EAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIP 338
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
+S DDE+L++ F+PFG+ITSCK+MR PSG+SRG GFV +S PEEA++A+ EMNGKM+ ++
Sbjct: 339 ESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNR 398
Query: 375 PLYVALAQRKEDRRARLQVCLL 396
PLYVALAQRK+ RR +L+ ++
Sbjct: 399 PLYVALAQRKDVRRQQLEAQIM 420
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/373 (56%), Positives = 285/373 (76%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F++ G ++S+RVCRD+ TRRS Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLR+SG GNIF+KNLDK+I++K L+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK- 199
CKV D NG SKGYGFV F+ E+A++AIEK+NG LLND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 200 -SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 VKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKEDR+A L
Sbjct: 366 ALAQRKEDRQAHL 378
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 173/293 (59%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N T LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGTLLNDRKVFVGRFKSRKEREAELGAKVKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E L+K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L +++ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEDRQAHLTNEYMQRM 386
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 163/291 (56%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + +S N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRRSGVGNIFVKNLDKSINNKVLYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAEL----------GAKVKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/384 (54%), Positives = 288/384 (75%), Gaps = 5/384 (1%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N + G AN + SLYVGDL +VT++ LY+ F+ G V+S+RVCRDL TRRSLGY Y
Sbjct: 2 NPSTGAAN---YPIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAY 58
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
VNF A +AL+ +NF P+ G+P R+M+ RDPSLRKSG GNIFIKNLDK+ID+K+L+
Sbjct: 59 VNFQQPGHAEKALDTMNFDPIKGRPCRIMWQQRDPSLRKSGVGNIFIKNLDKSIDNKSLY 118
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCK+A D G KGYGFV F+ E++A +AI +++GMLLNDK+V+VG ++
Sbjct: 119 DTFSAFGNILSCKIAQDELGNPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFVGRWMS 178
Query: 190 KQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
K+ER ++ KFTNVYVKN + +E +++ E G I S VM D +GKSK FGF
Sbjct: 179 KKERIEKMGTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGF 238
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
V+FE ++A AV LNGK+ + + G+A+K++ER E+K + E+ +E ++FQG N
Sbjct: 239 VSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVN 298
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LYIKNLDD IDDE+L++ FSP+G+I+S KVM+D G S+G GFV FS+PEEA++A+ EMN
Sbjct: 299 LYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMN 358
Query: 368 GKMVVSKPLYVALAQRKEDRRARL 391
G++++SKPLYVALAQR+E+R+A+L
Sbjct: 359 GRILISKPLYVALAQRREERKAQL 382
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 158/290 (54%), Gaps = 20/290 (6%)
Query: 109 SGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNE 162
+GA N +++ +L + L++ FS G++LS +V DL +S GY +V F
Sbjct: 5 TGAANYPIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQP 64
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A+KA++ +N + + + Q+RD + KS N+++KNL +S + L +
Sbjct: 65 GHAEKALDTMNFDPIKGRPCRI----MWQQRDPSLRKSGVGNIFIKNLDKSIDNKSLYDT 120
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S + +D G K +GFV+FE D A A+ ++G +DK+ +VG+ K
Sbjct: 121 FSAFGNILSCKIAQDELGNPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFVGRWMSKK 180
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
ER + M KF N+Y+KN D +DDE++K++ + G I S KVM DP
Sbjct: 181 ERI--------EKMGTQPKKF--TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPE 230
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G S+G GFV+F TPEEA A+ +NGK + + L+ A+++ +R A ++
Sbjct: 231 GKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVK 280
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 158/288 (54%), Gaps = 19/288 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S ++ +D GYG+V+F A A
Sbjct: 99 GVGNIFIKNLDKSIDNKSLYDTFSAFGNILSCKIAQD-ELGNPKGYGFVHFETEDAALEA 157
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+ ++ LN K + V + + + K G N+++KN +D + + + +
Sbjct: 158 IARVDGMLLNDKKVFVGRWMSKKERIEKMGTQPKKFTNVYVKNFGDDMDDEQMKEICAEA 217
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I+S KV TD G+SKG+GFV F+ E A++A+ LNG + ++++ G ++ ER
Sbjct: 218 GKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAA 277
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E IN+ + N+Y+KNL + +E L++ F YGTI+SA VM+D G SK
Sbjct: 278 EVKAEIEKKRQERINRFQGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSK 337
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
FGFV F + ++A +AV +NG+ K YV AQ++ ER+ +L Q
Sbjct: 338 GFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQRREERKAQLAAQ 385
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/429 (52%), Positives = 295/429 (68%), Gaps = 56/429 (13%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+AQ AI+ +NGMLLNDK+V+VGH + K++R ++ K+
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTNVYVKN+ + TTEE+ + F ++G ITSA + RD + GKS+ FGFVNF + D+AA A
Sbjct: 234 NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAA 293
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VEALN K F ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D IDD
Sbjct: 294 VEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 320 EKLKQLFSPFGSITSCKVMRD--------------------------------------- 340
EKL++LFS +G+ITS KVMRD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 341 --------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDV 473
Query: 387 RRARLQVCL 395
RR++L+ +
Sbjct: 474 RRSQLEASI 482
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 288/370 (77%), Gaps = 2/370 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVG+L+ +VT+S L+++F+ +GQV ++RVCRD +++SLGY YVNF + + +ALE
Sbjct: 47 ASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALE 106
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TP+ GK R+M+S RDPSLR++G+GNIFIKNL AID+K LHDTFSAFG ILSCK+
Sbjct: 107 ELNYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFGKILSCKI 166
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SK 201
ATD NG SKG+GFV ++ ESA+ AIE +NGMLLND +VYVG L K++R +++ + +
Sbjct: 167 ATDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKMRELIAN 226
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKN++ + E+ L+++F +GTI+S + +D GKS+ FGFVNFE +DA +AVE
Sbjct: 227 FTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVE 286
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN K D ++ YVG+AQKKSER LKHQ+E +E +K+QG NL++KNLDDSIDD K
Sbjct: 287 ELNNKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAK 346
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F P+G+ITS KVM D +G S+G GFV +S+PEEA++A+ EM+ +MV KPLYVALA
Sbjct: 347 LEEEFKPYGTITSAKVMLDDAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLYVALA 406
Query: 382 QRKEDRRARL 391
QRKE RR++L
Sbjct: 407 QRKEVRRSQL 416
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 157/281 (55%), Gaps = 15/281 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + FS G + + +V D ++ QS GY +V F + +KA+E+
Sbjct: 48 SLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALEE 107
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN + K + +RD + ++ N+++KNL + + L +F +G I S
Sbjct: 108 LNYTPIKGKACRI----MWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFGKILS 163
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ D +G SK FGFV++E S+ A A+E +NG +D E YVG K +R+
Sbjct: 164 CKIATDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQ------ 217
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
M+E F N+Y+KN++ + D++KL++ FSPFG+I+S + +D SG SRG GFV
Sbjct: 218 --SKMRELIANF--TNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFV 273
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F E+A +A+ E+N K + + LYV AQ+K +R L+
Sbjct: 274 NFEKHEDAVKAVEELNNKDIDGQKLYVGRAQKKSERMESLK 314
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 162/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L + + L+D F+ G+++S ++ D S G+G+V++ ++ A A
Sbjct: 133 GSGNIFIKNLHPAIDNKTLHDTFSAFGKILSCKIATD-ENGNSKGFGFVHYEESESAKAA 191
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + V R +R+ A N+++KN++ D L +TFS F
Sbjct: 192 IENVNGMLLNDHEVYVGPHLAKKDRQSKMRELIANFTNVYVKNINLNWDEDKLRETFSPF 251
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER-- 193
G I S ++ D +G+S+G+GFV F+ E A KA+E+LN ++ +++YVG +K ER
Sbjct: 252 GTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVEELNNKDIDGQKLYVGRAQKKSERME 311
Query: 194 ----------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
++NK + N++VKNL +S + L++ F YGTITSA VM D GKSK
Sbjct: 312 SLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAKLEEEFKPYGTITSAKVMLDDAGKSK 371
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV + + ++A +A+ ++ + K YV AQ+K R +L Q +
Sbjct: 372 GFGFVCYSSPEEATKAITEMHQRMVAGKPLYVALAQRKEVRRSQLSQQIQ 421
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 17/196 (8%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDA 256
N ++YV L S TE DL + F G +++ V RD K S + +VNF++ D
Sbjct: 42 NSETLASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADG 101
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
+A+E LN K + S+R+ L+ N++IKNL +
Sbjct: 102 EKALEELNYTPIKGKACRI----MWSQRDPSLRRN------------GSGNIFIKNLHPA 145
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
ID++ L FS FG I SCK+ D +G S+G GFV + E A A+ +NG ++ +
Sbjct: 146 IDNKTLHDTFSAFGKILSCKIATDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEV 205
Query: 377 YVALAQRKEDRRARLQ 392
YV K+DR+++++
Sbjct: 206 YVGPHLAKKDRQSKMR 221
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/429 (52%), Positives = 295/429 (68%), Gaps = 56/429 (13%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+AQ AI+ +NGMLLNDK+V+VGH + K++R ++ K+
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTNVYVKN+ + TTEE+ + F ++G ITSA + RD + GKS+ FGFVNF + D+AA A
Sbjct: 234 NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAA 293
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VEALN K F ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D IDD
Sbjct: 294 VEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 320 EKLKQLFSPFGSITSCKVMRD--------------------------------------- 340
EKL++LFS +G+ITS KVMRD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 341 --------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDV 473
Query: 387 RRARLQVCL 395
RR++L+ +
Sbjct: 474 RRSQLEASI 482
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/429 (52%), Positives = 295/429 (68%), Gaps = 56/429 (13%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+AQ AI+ +NGMLLNDK+V+VGH + K++R ++ K+
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTNVYVKN+ + TTEE+ + F ++G ITSA + RD + GKS+ FGFVNF + D+AA A
Sbjct: 234 NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAA 293
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VEALN K F ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D IDD
Sbjct: 294 VEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 320 EKLKQLFSPFGSITSCKVMRD--------------------------------------- 340
EKL++LFS +G+ITS KVMRD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 341 --------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDV 473
Query: 387 RRARLQVCL 395
RR++L+ +
Sbjct: 474 RRSQLEASI 482
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/383 (55%), Positives = 292/383 (76%), Gaps = 7/383 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N GG + SLYVGDL +VT++ LY F+ G +VS+RVCRD+ TRRSLGY Y+
Sbjct: 1 MNSGGPG---YPLASLYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYI 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A AL+ +N+ + G+PIR+M+S RDP+LRKSG GNIFIKN+D +ID+KAL+D
Sbjct: 58 NFQQPADAECALDTMNYDVIKGRPIRIMWSQRDPALRKSGVGNIFIKNIDDSIDNKALYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKV D G SKGYGFV F+ +E+A +AIE +NGMLLND++V+VGHF +
Sbjct: 118 TFSAFGNILSCKVVCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Query: 191 QERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E KFTN+Y+KN ++ T+E L+++F +G S VMRD G+S+ FGFV
Sbjct: 177 KEREVEFGTKVMKFTNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFV 236
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
N+ + +DA +AV+ +NGK+ + K YVG+AQK+ ER+ ELK +F+Q ++ ++QG NL
Sbjct: 237 NYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRYQGVNL 296
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y+KNLDDSIDDE+L++ FSP+G+ITS KVM + +G S+G GFV FS+PEEA++A+ EMNG
Sbjct: 297 YVKNLDDSIDDERLRKEFSPYGTITSAKVMTE-AGQSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 369 KMVVSKPLYVALAQRKEDRRARL 391
++V +KPLYVALAQR+E+R+A L
Sbjct: 356 RIVATKPLYVALAQRREERKAIL 378
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +++ ++ + LYD F+ G ++S +V D R S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNIDDSIDNKALYDTFSAFGNILSCKVVCD--ERGSKGYGFVHFETQEAANRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + G NI+IKN + + L + FSAF
Sbjct: 155 IETMNGMLLNDRKVFVGHFKSRKEREVEFGTKVMKFTNIYIKNFGDNLTDEKLKEAFSAF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS +V D G+S+G+GFV + + E AQKA++++NG +N K +YVG ++ ER
Sbjct: 215 GKTLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQG 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL +S +E L+K F YGTITSA VM + G+S
Sbjct: 275 EL-KRKFDQLKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFSPYGTITSAKVMTEA-GQS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ++ ER+ L +++ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQRM 386
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 159/282 (56%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L+ FS G I+S +V D+ +S GY ++ F A+ A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADAECALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ + + + +RD + KS N+++KN+ +S + L +F +G I
Sbjct: 71 TMNYDVIKGRPIRI----MWSQRDPALRKSGVGNIFIKNIDDSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D G SK +GFV+FE + A RA+E +NG +D++ +VG + + ERE+E
Sbjct: 127 SCKVVCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGT 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ KF N+YIKN D++ DEKLK+ FS FG S +VMRD G SRG GF
Sbjct: 186 KVM--------KF--TNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V ++ E+A +A+ EMNGK + K +YV AQ++ +R+ L+
Sbjct: 236 VNYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQGELK 277
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/385 (57%), Positives = 283/385 (73%), Gaps = 3/385 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N N + SLY+G+L+ VT++ L++LFN +G V S+RVCRD TRRSLGY YVNF N +
Sbjct: 62 NGNTSTSASLYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNME 121
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ +AL+ LN+T + G+P R+M+S RDPSLRK G GN+FIKNLD AID+KALHDTFSAFG
Sbjct: 122 DGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG 181
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT- 195
ILSCKVA D G SKGYGFV FD+ +SA AIE +NGMLLNDK+VYVGH + +++R +
Sbjct: 182 KILSCKVAVDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYVGHHISRRDRQSK 241
Query: 196 -EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
E K+ FTNVYVKNL TTEE+ K F +YG ITS + +D GK + F FVNF D
Sbjct: 242 FEALKANFTNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHD 301
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A +AV+ LN ++ K+ YVG+AQKK ER+ EL+ Q+EQ E +K+QG NL++KNL
Sbjct: 302 SAQQAVDELNDFEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGVNLFVKNLQ 361
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+LK FS FG+ITS KVM D + S+G GFV +S PEEA++A+ EMN +M+ K
Sbjct: 362 DEIDDERLKSEFSAFGTITSAKVMTDENNKSKGFGFVCYSNPEEATKAIAEMNQRMLAGK 421
Query: 375 PLYVALAQRKEDRRARLQVCLLQCR 399
PLYVALAQRKE RR++L+ +Q R
Sbjct: 422 PLYVALAQRKEVRRSQLE-AQIQAR 445
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/298 (72%), Positives = 252/298 (84%)
Query: 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDN 161
RDPS R+SG+ NIFIKNLDK ID+K LHDTFSAFG ILSCKVA D GQSKG+GFVQ++
Sbjct: 1 RDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEK 60
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
EESAQ A++ LNGML+NDK VYVG FLRKQERD +K+KF NV+VKNLSESTT++DL K
Sbjct: 61 EESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVK 120
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
F YGTITSAVVM DGKS+CF FVNFE+ DDAARAVE LNGKK +DKEWYVG+AQKK
Sbjct: 121 VFSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKK 180
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
SERE++LK +FEQ+MK+AADK+QG NLY+KNLDD I D++L++LFS FG ITSCK+MRD
Sbjct: 181 SEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQ 240
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
+G+S+GSGFV+FST EEAS+AL EMNGKM+ KPLYVA AQRKEDR+A LQ Q R
Sbjct: 241 NGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMR 298
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 165/289 (57%), Gaps = 17/289 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L+ + + L+D F+ G ++S +V D +S G+G+V + + A A
Sbjct: 9 GSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMD-DIGQSKGFGFVQYEKEESAQSA 67
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
++ LN +N KP+ V RD S K+ N+F+KNL ++ L FS +G
Sbjct: 68 MKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVKVFSGYGT 127
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
I S V ++G+S+ + FV F++ + A +A+E+LNG +NDK+ YVG +K ER+ ++
Sbjct: 128 ITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDL 187
Query: 198 ------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+K + N+Y+KNL + T++ L++ F +G ITS +MRD +G SK
Sbjct: 188 KRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGS 247
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
GFV+F ++A++A+ +NGK K YV AQ+K +R+ L+ QF Q
Sbjct: 248 GFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQ 296
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+++ +LY+ +L+ +TD QL +LF+ G++ S ++ RD S G G+V+FS +E
Sbjct: 199 ADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRD-QNGVSKGSGFVSFSTREE 257
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A++AL +N ++GKP+ V ++ R
Sbjct: 258 ASQALTEMNGKMISGKPLYVAFAQR 282
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/379 (56%), Positives = 293/379 (77%), Gaps = 3/379 (0%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL A+VT++ L++ F+ G ++S+RVCRD+ TRRSLGY YVNF +A R
Sbjct: 8 YPMNSLYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF L G+PIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++DTFSAFG+ILS
Sbjct: 68 ALDTMNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGHILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV TD NG +KGYGFV F+ +E+A KAIEK+NGMLLN K+VYVG+F+ ++ER ++ +
Sbjct: 128 CKVVTDENGVNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGYFIPRKERLMQMGDH 187
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+ +FTNV++KNL+E + L + G+YG+I SA +M D D KSK FGF++FE+ + A
Sbjct: 188 QKQFTNVFIKNLAEDVDDGKLAEFGGQYGSILSAKIMFD-DSKSKGFGFISFEDHEAAND 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
V+ +NG + + + Y G+AQKK+ER ELK +FE +E + ++QG NLYIKNLDD ID
Sbjct: 247 FVKTINGSEVNGRTLYAGRAQKKAERAAELKARFEALKQERSTRYQGVNLYIKNLDDEID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FS +G+ITS KVM D S+G GFV FS+PEEA++A+ EMNG+++V+KPLYV
Sbjct: 307 DERLRKEFSRYGTITSAKVMSDDKANSKGFGFVCFSSPEEATKAVTEMNGRILVAKPLYV 366
Query: 379 ALAQRKEDRRARLQVCLLQ 397
ALAQRK++RRA+L +Q
Sbjct: 367 ALAQRKDERRAQLASQYMQ 385
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 164/294 (55%), Gaps = 22/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S +V D + GYG+V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKAMYDTFSAFGHILSCKVVTD-ENGVNKGYGFVHFETQEAANKA 155
Query: 82 LEMLNFTPLNGKPIRVMY-SHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V Y R L + G N+FIKNL + +D L + +
Sbjct: 156 IEKVNGMLLNGKKVYVGYFIPRKERLMQMGDHQKQFTNVFIKNLAEDVDDGKLAEFGGQY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G+ILS K+ D + +SKG+GF+ F++ E+A ++ +NG +N + +Y G +K ER
Sbjct: 216 GSILSAKIMFD-DSKSKGFGFISFEDHEAANDFVKTINGSEVNGRTLYAGRAQKKAERAA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K++F N+Y+KNL + +E L+K F YGTITSA VM D S
Sbjct: 275 EL-KARFEALKQERSTRYQGVNLYIKNLDDEIDDERLRKEFSRYGTITSAKVMSDDKANS 333
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER +L Q+ Q +
Sbjct: 334 KGFGFVCFSSPEEATKAVTEMNGRILVAKPLYVALAQRKDERRAQLASQYMQRV 387
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/376 (57%), Positives = 287/376 (76%), Gaps = 2/376 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+L+ VT++ LY++F+ +G V S+RVCRD TRRSLGY YVN+ NA +A RALE
Sbjct: 84 TSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALE 143
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + K R+M+S RDPSLRK+G GNIFIKNLD+ ID+KALHDTF+AFG+ILSCKV
Sbjct: 144 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKV 203
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSK 201
ATD +G SKGYGFV + ESA+ AI+ +NGM LNDK V+VG + +++R +I+ +S+
Sbjct: 204 ATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQ 263
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+Y+KNL TT E+L + FG++G ITSA V D GK + FGFVN+EN + A++AV+
Sbjct: 264 FTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVD 323
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K + YV +AQK++ER+ ELK EQ E K+QG NLY+KNLDD DDEK
Sbjct: 324 ALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEK 383
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ F+PFG+ITSCKVM+D G S+G GFV FS+P+EA++A+ EMNGKM+ SKPLYV+LA
Sbjct: 384 LQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLA 443
Query: 382 QRKEDRRARLQVCLLQ 397
QRKE R+ +L+ + Q
Sbjct: 444 QRKEVRKQQLEAQMSQ 459
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 155/291 (53%), Gaps = 19/291 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V D S GYG+V++ + A A
Sbjct: 170 GQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVATD-EHGASKGYGFVHYVTGESAEAA 228
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V RD + +S N++IKNL + L++ F F
Sbjct: 229 IKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKF 288
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S V +D +G+ +G+GFV ++N ESA KA++ L+ +YV ++ ERD
Sbjct: 289 GPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYVARAQKRTERDA 348
Query: 196 EINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K+ + N+YVKNL + +E LQ F +GTITS VM+D G SK
Sbjct: 349 ELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGTSK 408
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
FGFV F + D+A +AV +NGK K YV AQ+K R+ +L+ Q Q
Sbjct: 409 GFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVRKQQLEAQMSQ 459
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/370 (56%), Positives = 290/370 (78%), Gaps = 4/370 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL +VT+S LY++F+ +G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + G+PIR+M+SHRDP LRKSG GNIFIKNL+ +ID+KAL+DTFS FG+ILS KV
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
+ +G S+G+GFV F+ E+AQKAI +NGMLLND++V+VGHF +Q+R+ E+
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKNL + E+ LQ F ++G + S VMRD +G+S+ FGFVNFE ++A +AV+
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG NLY+KNLDDSI+DE+
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G ITS KVM + S S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 369 QRKEERKAIL 378
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 188/354 (53%), Gaps = 27/354 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V + R G+G+V+F + A +A
Sbjct: 97 GMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R G NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GN+ S KV D NGQS+G+GFV F+ E AQKA++ +NG ++ + +YVG ++ ER +
Sbjct: 215 GNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQS 274
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + N+YVKNL +S +E L++ F YG ITSA VM + SK
Sbjct: 275 ELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESS-HSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA-DK 302
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRPSHPVLSS 393
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
FQ Y L ++ + ++ GSIT + DP ++ G + P
Sbjct: 394 FQQPTSY---LLPAVPQSTAQAVYYSSGSITPMQ--PDPRWTAQPHGPPSTCPP 442
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 162/281 (57%), Gaps = 16/281 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS GNILS +V D+ +S GY ++ F A++A++
Sbjct: 12 SLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + RD + KS N+++KNL S + L +F +G+I S
Sbjct: 72 MNFEVIKGQPIRI----MWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ V+ + G S+ FGFV+FE + A +A+ +NG +D++ +VG + + +RE EL
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A N+Y+KNL ++D+++L+ LFS FG++ S KVMRD +G SRG GFV
Sbjct: 184 -------GARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F EEA +A+ MNGK V + LYV AQ++ +R++ L+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELK 277
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 119/211 (56%), Gaps = 23/211 (10%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A G T++YV +L ANV + +L DLF+Q G + SV+V RD S +S G+G+VNF +E
Sbjct: 185 ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRGFGFVNFEKHEE 243
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKS------------GAGNIFIKNLDK 121
A +A++ +N ++G+ + V + R L++ N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+I+ + L + FS +G I S KV T+ + SKG+GFV F + E A KA+ ++NG ++ K
Sbjct: 304 SINDERLKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 362
Query: 182 VYVGHFLRKQERDTEINKSKFTNVYVKNLSE 212
+YV RK+ER K+ TN Y + S
Sbjct: 363 LYVALAQRKEER-----KAILTNQYRRRPSH 388
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/378 (55%), Positives = 286/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 167/297 (56%), Gaps = 29/297 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + S R+ R++ G NI++KNL +D + L D F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRE---REAELGARALEFTNIYVKNLPVDVDEQGLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ E
Sbjct: 212 SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVE 271
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G
Sbjct: 272 RQNEL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG- 329
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 162/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELK 277
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/378 (55%), Positives = 286/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 167/297 (56%), Gaps = 29/297 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + S R+ R++ G NI++KNL +D + L D F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRE---REAELGARALEFTNIYVKNLPVDVDEQGLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ E
Sbjct: 212 SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVE 271
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G
Sbjct: 272 RQNEL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG- 329
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 162/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELK 277
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/370 (56%), Positives = 290/370 (78%), Gaps = 4/370 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL +VT+S LY++F+ +G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + G+PIR+M+SHRDP LRKSG GNIFIKNL+ +ID+KAL+DTFS FG+ILS KV
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
+ +G S+G+GFV F+ E+AQKAI +NGMLLND++V+VGHF +Q+R+ E+
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKNL + E+ LQ F ++G + S VMRD +G+S+ FGFVNFE ++A +AV+
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG NLY+KNLDDSI+DE+
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G ITS KVM + S S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 369 QRKEERKAIL 378
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 188/354 (53%), Gaps = 27/354 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V + R G+G+V+F + A +A
Sbjct: 97 GMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R G NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GN+ S KV D NGQS+G+GFV F+ E AQKA++ +NG ++ + +YVG ++ ER +
Sbjct: 215 GNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQS 274
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + N+YVKNL +S +E L++ F YG ITSA VM + SK
Sbjct: 275 ELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESS-HSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA-DK 302
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRPSHPVLSS 393
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
FQ Y L ++ + ++ GSIT + DP ++ G + P
Sbjct: 394 FQQPTSY---LLPAVPQSTAQAVYYSSGSITPMQ--PDPRWTAQPHGPPSTCPP 442
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 162/281 (57%), Gaps = 16/281 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS GNILS +V D+ +S GY ++ F A++A++
Sbjct: 12 SLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + RD + KS N+++KNL S + L +F +G+I S
Sbjct: 72 MNFEVIKGQPIRI----MWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ V+ + G S+ FGFV+FE + A +A+ +NG +D++ +VG + + +RE EL
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A N+Y+KNL ++D+++L+ LFS FG++ S KVMRD +G SRG GFV
Sbjct: 184 -------GARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F EEA +A+ MNGK V + LYV AQ++ +R++ L+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELK 277
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 119/211 (56%), Gaps = 23/211 (10%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A G T++YV +L ANV + +L DLF+Q G + SV+V RD S +S G+G+VNF +E
Sbjct: 185 ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRGFGFVNFEKHEE 243
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKS------------GAGNIFIKNLDK 121
A +A++ +N ++G+ + V + R L++ N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+I+ + L + FS +G I S KV T+ + SKG+GFV F + E A KA+ ++NG ++ K
Sbjct: 304 SINDERLKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 362
Query: 182 VYVGHFLRKQERDTEINKSKFTNVYVKNLSE 212
+YV RK+ER K+ TN Y + S
Sbjct: 363 LYVALAQRKEER-----KAILTNQYRRRPSH 388
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/369 (57%), Positives = 283/369 (76%), Gaps = 2/369 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+L+ +V+++ LYD+F+ +G V S+RVCRD T SLGY YVNF + + +A+E
Sbjct: 39 SLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAIEQ 98
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN+T + GKP R+M+S RDPSLRK G+GNI+IKNL AID+K+LH+TFS FGNILSCKVA
Sbjct: 99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
TD NG S+G+GFV F+NE A+ AIE +NGML+ND++VYV + K++R +++ K+KF
Sbjct: 159 TDDNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHVSKKDRQSKLEEVKAKF 218
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+YVKN+ T++E+ ++ F +YG ITSAV+ +D +GK + FGF+NFE+ AARAV+
Sbjct: 219 TNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDE 278
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN F + YVG+AQKK ER+ ELK Q+E E K+QG NL+IKNLDDSIDDEKL
Sbjct: 279 LNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKL 338
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K F+PFG+ITS KVM+D +G SRG GFV FSTPEEA++A+ E N ++V KPLYVA+AQ
Sbjct: 339 KDEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIAQ 398
Query: 383 RKEDRRARL 391
RKE RR +L
Sbjct: 399 RKEVRRNQL 407
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 159/290 (54%), Gaps = 16/290 (5%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P + SGA ++++ LD ++ L+D FS G++ S +V D + S GY +V F +
Sbjct: 31 PKVETSGA-SLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDH 89
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
E+ +KAIE+LN L+ K + +RD + K N+Y+KNL + + L ++
Sbjct: 90 EAGRKAIEQLNYTLIKGKPCRI----MWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHET 145
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V D +G S+ FGFV+FEN DA A+EA+NG +D+E YV K
Sbjct: 146 FSTFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHVSKK 205
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
+R+ +L+ E KF N+Y+KN+D E+ +QLFS +G ITS + +D
Sbjct: 206 DRQSKLE--------EVKAKF--TNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSE 255
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G RG GF+ F A+RA+ E+N + LYV AQ+K +R+ L+
Sbjct: 256 GKLRGFGFINFEDHSTAARAVDELNESDFRGQTLYVGRAQKKHERQQELK 305
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 152/290 (52%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++Y+ +L + + L++ F+ G ++S +V D S G+G+V+F N +A A
Sbjct: 124 GSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-DNGVSRGFGFVHFENESDARDA 182
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N +N + + V + S +D + K+ NI++KN+D + FS +
Sbjct: 183 IEAVNGMLMNDQEVYVAWHVSKKDRQSKLEEVKAKFTNIYVKNIDLETSQEEFEQLFSKY 242
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + D G+ +G+GF+ F++ +A +A+++LN + +YVG +K ER
Sbjct: 243 GKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELNESDFRGQTLYVGRAQKKHERQQ 302
Query: 196 EINKSKFT------------NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K T N+++KNL +S +E L+ F +GTITS VM+D G S+
Sbjct: 303 ELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKDEAGSSR 362
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 363 GFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIAQRKEVRRNQLAQQIQ 412
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 17/202 (8%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNF 250
E +T ++ ++YV L S +E L F G+++S V RD S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
+ + +A+E LN K + S+R+ L+ K N+YI
Sbjct: 87 HDHEAGRKAIEQLNYTLIKGKPCRI----MWSQRDPSLR------------KKGSGNIYI 130
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNL +ID++ L + FS FG+I SCKV D +G+SRG GFV F +A A+ +NG +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVNGML 190
Query: 371 VVSKPLYVALAQRKEDRRARLQ 392
+ + +YVA K+DR+++L+
Sbjct: 191 MNDQEVYVAWHVSKKDRQSKLE 212
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/378 (55%), Positives = 286/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 167/297 (56%), Gaps = 29/297 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + S R+ R++ G NI++KNL +D + L D F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRE---REAELGARALEFTNIYVKNLPVDVDEQGLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ E
Sbjct: 212 SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVE 271
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G
Sbjct: 272 RQNEL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG- 329
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 162/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELK 277
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/391 (55%), Positives = 285/391 (72%), Gaps = 4/391 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
G + SLYVGDL +VT++ L++ F+ G V+S+RVCRD TRRSLGY YV
Sbjct: 5 ATAGAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYV 64
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + GKPIR+M+S RDPS+R+SGAGNIFIKNLDK+ID+KA++D
Sbjct: 65 NFQQPADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYD 124
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFS FGNILSCKVA D SKGYGFV F+ EESAQKAIEK+NGMLL K+VYVG F +
Sbjct: 125 TFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPR 184
Query: 191 QERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
R E+ ++ +FTNVY+KN ++ +E L+K F ++G ITSA VM D DGKSK FGFV
Sbjct: 185 TARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFV 244
Query: 249 NFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
FEN +DA +AV ++ + +++ YV +AQKK+ER ELK ++EQ E ++QG
Sbjct: 245 AFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGV 304
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
NLY+KNLDD+++D+ LKQ F +G ITS KVM D +G S+G GFV F P+EA++A+ EM
Sbjct: 305 NLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEM 364
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
NGKM+ +KPLYVALAQRKEDR+A+L +Q
Sbjct: 365 NGKMMCTKPLYVALAQRKEDRKAQLASQYMQ 395
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 169/295 (57%), Gaps = 21/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S +V D + S GYG+V+F + A +A
Sbjct: 104 GAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESN-SKGYGFVHFETEESAQKA 162
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+E +N L GK + V + R LR+ G N++IKN +D +AL FS F
Sbjct: 163 IEKVNGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEKLFSKF 222
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLRKQER 193
G I S V D +G+SKG+GFV F+N E A+KA+ +++ L ++++YV +K ER
Sbjct: 223 GKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNER 282
Query: 194 DTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ + + N+YVKNL ++ ++ L+++F YG ITSA VM D +G+
Sbjct: 283 SAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGR 342
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV FE D+A +AV +NGK K YV AQ+K +R+ +L Q+ Q +
Sbjct: 343 SKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQRL 397
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/388 (56%), Positives = 290/388 (74%), Gaps = 5/388 (1%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
N GAN + SLYVGDL VT++ L++ F+ G VVS+RVCRD+ TRRSLGY YVN
Sbjct: 3 NTAGAN---YPIASLYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMITRRSLGYAYVN 59
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
F +A RAL+ +NF L G+PIR+M+S RDPSLR+SG GNIFIKNLDK ID+KA++DT
Sbjct: 60 FQQPADAERALDSMNFDVLRGRPIRIMWSQRDPSLRRSGVGNIFIKNLDKTIDNKAMYDT 119
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFGNILSCKVA D G SKGYGFV F+ EESA AI K+NGMLLN K+V+VG F+ ++
Sbjct: 120 FSAFGNILSCKVAQDEAGNSKGYGFVHFETEESAVNAITKVNGMLLNGKKVFVGRFIPRK 179
Query: 192 ERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
+R+ E+ K+K FTNVY+KN + +E L + F +YG +TS VM DGKS+ FGFV
Sbjct: 180 DRERELGEKAKYFTNVYIKNFGDEFDDEKLFECFSKYGKVTSHKVMSSDDGKSRGFGFVC 239
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
+E+ D A RA + ++ K + K +VG+AQK++ER+ EL+ +FEQ E +++QG NLY
Sbjct: 240 YEDPDAAERACDDMHAKDMNGKTLFVGRAQKRNERQTELRRKFEQMKIERLNRYQGVNLY 299
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLDD+IDDE+L++ F+P+G+ITS KVM + G GFV FS+PEEA++A+ EMNG+
Sbjct: 300 VKNLDDTIDDERLRKEFAPYGTITSAKVMTEGGRNKGGFGFVCFSSPEEATKAVTEMNGR 359
Query: 370 MVVSKPLYVALAQRKEDRRARLQVCLLQ 397
++VSKPLYVALAQRKEDR+A+L +Q
Sbjct: 360 ILVSKPLYVALAQRKEDRKAQLASQYMQ 387
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 164/293 (55%), Gaps = 19/293 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V +D S GYG+V+F + A A
Sbjct: 98 GVGNIFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-EAGNSKGYGFVHFETEESAVNA 156
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LNGK + V + R R+ G N++IKN D + L + FS +
Sbjct: 157 ITKVNGMLLNGKKVFVGRFIPRKDRERELGEKAKYFTNVYIKNFGDEFDDEKLFECFSKY 216
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G + S KV + +G+S+G+GFV +++ ++A++A + ++ +N K ++VG ++ ER T
Sbjct: 217 GKVTSHKVMSSDDGKSRGFGFVCYEDPDAAERACDDMHAKDMNGKTLFVGRAQKRNERQT 276
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + N+YVKNL ++ +E L+K F YGTITSA VM +G
Sbjct: 277 ELRRKFEQMKIERLNRYQGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMTEGGRNKG 336
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K +R+ +L Q+ Q M
Sbjct: 337 GFGFVCFSSPEEATKAVTEMNGRILVSKPLYVALAQRKEDRKAQLASQYMQRM 389
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/376 (57%), Positives = 287/376 (76%), Gaps = 2/376 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+L+ VT++ LY++F+ +G V S+RVCRD TRRSLGY YVN+ NA +A RALE
Sbjct: 173 TSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALE 232
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + K R+M+S RDPSLRK+G GNIFIKNLD+ ID+KALHDTF+AFG+ILSCKV
Sbjct: 233 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKV 292
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSK 201
ATD +G SKGYGFV + ESA+ AI+ +NGM LNDK V+VG + +++R +I+ +S+
Sbjct: 293 ATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQ 352
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+Y+KNL TT E+L + FG++G ITSA V D GK + FGFVN+EN + A++AV+
Sbjct: 353 FTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVD 412
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K + YV +AQK++ER+ ELK EQ E K+QG NLY+KNLDD DDEK
Sbjct: 413 ALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEK 472
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ F+PFG+ITSCKVM+D G S+G GFV FS+P+EA++A+ EMNGKM+ SKPLYV+LA
Sbjct: 473 LQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLA 532
Query: 382 QRKEDRRARLQVCLLQ 397
QRKE R+ +L+ + Q
Sbjct: 533 QRKEVRKQQLEAQMSQ 548
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 160/305 (52%), Gaps = 19/305 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V D S GYG+V++ + A A
Sbjct: 259 GQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVATD-EHGASKGYGFVHYVTGESAEAA 317
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V RD + +S N++IKNL + L++ F F
Sbjct: 318 IKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKF 377
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S V +D +G+ +G+GFV ++N ESA KA++ L+ +YV ++ ERD
Sbjct: 378 GPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYVARAQKRTERDA 437
Query: 196 EINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K+ + N+YVKNL + +E LQ F +GTITS VM+D G SK
Sbjct: 438 ELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGTSK 497
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
FGFV F + D+A +AV +NGK K YV AQ+K R+ +L+ Q Q + + +
Sbjct: 498 GFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVRKQQLEAQMSQRSQMRSQQI 557
Query: 304 QGANL 308
A +
Sbjct: 558 AAAGI 562
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/429 (51%), Positives = 294/429 (68%), Gaps = 49/429 (11%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 104 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAF 163
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R +
Sbjct: 164 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 223
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTNVY+KN+ + T+E+ +K F ++G ITSA + RD +GKS+ FGFVNF
Sbjct: 224 KFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTH 283
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
D A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 284 DSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 343
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPS------------------------------- 342
D +DDEKL++LFSPFG+ITS KVMRD
Sbjct: 344 TDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEK 403
Query: 343 ----------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+
Sbjct: 404 PKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDV 463
Query: 387 RRARLQVCL 395
RR++L+ +
Sbjct: 464 RRSQLEASI 472
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/391 (55%), Positives = 285/391 (72%), Gaps = 4/391 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
G + SLYVGDL +VT++ L++ F+ G V+S+RVCRD TRRSLGY YV
Sbjct: 5 ATAGAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYV 64
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + GKPIR+M+S RDPS+R+SGAGNIFIKNLDK+ID+KA++D
Sbjct: 65 NFQQPADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYD 124
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFS FGNILSCKVA D SKGYGFV F+ EESAQKAIEK+NGMLL K+VYVG F +
Sbjct: 125 TFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPR 184
Query: 191 QERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
R E+ ++ +FTNVY+KN ++ +E L+K F ++G ITSA VM D DGKSK FGFV
Sbjct: 185 TARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFV 244
Query: 249 NFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
FEN +DA +AV ++ + +++ YV +AQKK+ER ELK ++EQ E ++QG
Sbjct: 245 AFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGV 304
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
NLY+KNLDD+++D+ LKQ F +G ITS KVM D +G S+G GFV F P+EA++A+ EM
Sbjct: 305 NLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEM 364
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
NGKM+ +KPLYVALAQRKEDR+A+L +Q
Sbjct: 365 NGKMMCTKPLYVALAQRKEDRKAQLASQYMQ 395
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 169/295 (57%), Gaps = 21/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S +V D + S GYG+V+F + A +A
Sbjct: 104 GAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESN-SKGYGFVHFETEESAQKA 162
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+E +N L GK + V + R LR+ G N++IKN +D +AL FS F
Sbjct: 163 IEKVNGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEKLFSKF 222
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLRKQER 193
G I S V D +G+SKG+GFV F+N E A+KA+ +++ L ++++YV +K ER
Sbjct: 223 GKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNER 282
Query: 194 DTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ + + N+YVKNL ++ ++ L+++F YG ITSA VM D +G+
Sbjct: 283 SAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGR 342
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV FE D+A +AV +NGK K YV AQ+K +R+ +L Q+ Q +
Sbjct: 343 SKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQRL 397
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/430 (51%), Positives = 294/430 (68%), Gaps = 50/430 (11%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
N NQ + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 42 PNPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 101
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 102 ADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 161
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R +
Sbjct: 162 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 221
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTNVYVKN+ T+E+ ++ FG+YG ITSA + RD GKS+ FGFVN+ +
Sbjct: 222 KFEEMKANFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRGFGFVNYVDH 281
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+A AV+ LN K F ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 282 QNAQSAVDELNDKDFHSQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNL 341
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGI----------------------------- 344
D +DD+KL++LFSPFG+ITS KVMRD G+
Sbjct: 342 TDDVDDDKLRELFSPFGTITSAKVMRDTVGVSSDSDKEEGKEASEKEGEEASEKEETKVK 401
Query: 345 -------------------SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385
S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+
Sbjct: 402 AEDEEKTETKKPEKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 461
Query: 386 DRRARLQVCL 395
R+++L+ +
Sbjct: 462 VRKSQLEASI 471
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/354 (61%), Positives = 277/354 (78%), Gaps = 4/354 (1%)
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+ +NF + GKPIR+M+
Sbjct: 2 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 61
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGY FV F
Sbjct: 62 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHF 120
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-FTNVYVKNLSESTTEE 217
+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ K+K FTNVY+KN E +E
Sbjct: 121 ETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 180
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L++ F ++G S VMRD GKSK FGFV++E +DA +AVE +NGK+ K +VG+
Sbjct: 181 SLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 240
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL++ FSPFGSITS KV
Sbjct: 241 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 300
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
M + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQRKE+R+A L
Sbjct: 301 MLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHL 353
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 72 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 129
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 130 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 189
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 190 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 249
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 250 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 307
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 308 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 361
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 160/266 (60%), Gaps = 16/266 (6%)
Query: 128 LHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
L++ FS G +LS +V D+ +S GY +V F A++A++ +N ++ K + +
Sbjct: 2 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRI-- 59
Query: 187 FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
+RD + KS NV++KNL +S + L +F +G I S V+ D +G SK +
Sbjct: 60 --MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYA 116
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL + A +F
Sbjct: 117 FVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK--------AKEF--T 166
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV++ E+A++A+ EM
Sbjct: 167 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEM 226
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQ 392
NGK + K ++V AQ+K +R+A L+
Sbjct: 227 NGKEISGKIIFVGRAQKKVERQAELK 252
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/378 (56%), Positives = 289/378 (76%), Gaps = 2/378 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A N +TSLYVG+L+ +V+++ LYDLF+ +G V S+RVCRD T+ SLGY YVNFS+
Sbjct: 39 AGDNDVTSTSLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAYVNFSDH 98
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +A+E LN+TP+ GK R+M+S RDPSLRK G GNIFIKNL++ ID+KAL DTFS F
Sbjct: 99 EAGKQAIEKLNYTPIKGKLCRIMWSQRDPSLRKKGHGNIFIKNLNQDIDNKALFDTFSVF 158
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILS K+ATD G+SKG+GFV F+ E +A +AI+ LNGMLLN +++YV L ++ERD+
Sbjct: 159 GNILSSKIATDETGKSKGFGFVHFEEESAANEAIDALNGMLLNGQEIYVAPHLTRKERDS 218
Query: 196 EINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
++ ++K FTNVYVKN+ TT+E+ ++ FG+ GT+TS + R DGK K FGFVN+E+
Sbjct: 219 QLEETKAHFTNVYVKNIDLETTDEEFKEFFGKIGTVTSVALERGPDGKLKGFGFVNYEDH 278
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE LNG +F D+E +VG+AQKK ER LK Q+E E K+QG NL++KNL
Sbjct: 279 NDAVKAVEELNGAEFKDQELFVGRAQKKYERIQSLKKQYESTRLEKMAKYQGVNLFVKNL 338
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ F+PFG+ITS KVMR +G S+G GFV FS+PEEA++A+ E N ++V
Sbjct: 339 DDSIDDEKLQEEFAPFGNITSVKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQQIVAG 398
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVA+AQRK+ RR++L
Sbjct: 399 KPLYVAIAQRKDVRRSQL 416
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 156/290 (53%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L ++ + L+D F+ G ++S ++ D T +S G+G+V+F A A
Sbjct: 133 GHGNIFIKNLNQDIDNKALFDTFSVFGNILSSKIATD-ETGKSKGFGFVHFEEESAANEA 191
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ LN LNG+ I V RD L ++ A N+++KN+D + + F
Sbjct: 192 IDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNIDLETTDEEFKEFFGKI 251
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G + S + +G+ KG+GFV +++ A KA+E+LNG D++++VG +K ER
Sbjct: 252 GTVTSVALERGPDGKLKGFGFVNYEDHNDAVKAVEELNGAEFKDQELFVGRAQKKYERIQ 311
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K +K+ N++VKNL +S +E LQ+ F +G ITS VMR +GKSK
Sbjct: 312 SLKKQYESTRLEKMAKYQGVNLFVKNLDDSIDDEKLQEEFAPFGNITSVKVMRTENGKSK 371
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F + ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 372 GFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 421
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 17/191 (8%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVE 261
T++YV L S +E L F G++ S V RD K+ + +VNF + + +A+E
Sbjct: 47 TSLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAYVNFSDHEAGKQAIE 106
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN K + S+R+ L+ K N++IKNL+ ID++
Sbjct: 107 KLNYTPIKGKLCRI----MWSQRDPSLR------------KKGHGNIFIKNLNQDIDNKA 150
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L FS FG+I S K+ D +G S+G GFV F A+ A+ +NG ++ + +YVA
Sbjct: 151 LFDTFSVFGNILSSKIATDETGKSKGFGFVHFEEESAANEAIDALNGMLLNGQEIYVAPH 210
Query: 382 QRKEDRRARLQ 392
+++R ++L+
Sbjct: 211 LTRKERDSQLE 221
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ ++ D +L + F G + SV+V R +S G+G+V FS+ +EA +A+
Sbjct: 331 VNLFVKNLDDSIDDEKLQEEFAPFGNITSVKVMR-TENGKSKGFGFVCFSSPEEATKAIT 389
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 390 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 424
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/373 (57%), Positives = 284/373 (76%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TRRS Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S DPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-K 199
CKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ K
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 200 SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+K F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G SRG GFV FS+PEEA++A+ EMNG +V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSRGFGFVCFSSPEEATKAVTEMNGIIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
+LA RKE+R+A L
Sbjct: 366 SLAHRKEERQAYL 378
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 170/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG L+ KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E L+K+F +GTITSA VM +G G+S+
Sbjct: 275 ELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEG-GRSR 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG K YV A +K ER+ L +++ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGIIVATKPLYVSLAHRKEERQAYLTNEYMQRM 386
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 162/291 (55%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL +S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + + D + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPVRI----MWSQHDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAEL----------GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELK 277
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+R S +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRRSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P++A AL MN ++ KP+ + +Q R
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPVRIMWSQHDPSLR 94
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/378 (55%), Positives = 286/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER
Sbjct: 123 GNILSCKVACDKHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G+S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y +AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + S S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTEGSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 163/294 (55%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDKHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R + GA NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D +G+S+ +GFV F+ E AQKA+ +NG ++ + +Y ++ ER
Sbjct: 215 GKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQN 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL +S ++ L+K F YG ITSA VM +G S
Sbjct: 275 EL-KRKFEQMKQDRLSRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGS-HS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 162/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G+ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDKHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ER EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RRERAAEL----------GARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SR GFV F EEA +A++ MNGK V + LY + AQ++ +R+ L+
Sbjct: 226 NSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELK 277
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/378 (55%), Positives = 284/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A + +SLYVGDL +VT++ LY+ F+ +G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 AGGQGYPLSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNL+ +ID KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF +ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFVGHFKSHREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ FTN+YVKNL E+ LQ F E+G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGAQALAFTNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV+ +NGK+ ++ YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSI DEKL+ +FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG +V +
Sbjct: 302 DDSISDEKLRTVFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGCIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 174/317 (54%), Gaps = 36/317 (11%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETNEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + SHR+ R++ G NI++KNL +D + L D F
Sbjct: 155 ISTMNGMLLNDRKVFVGHFKSHRE---REAELGAQALAFTNIYVKNLHVDMDEQGLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
FG +LS KV D +G S+G+GFV F+ E AQKA++ +NG ++ +Q+YVG ++ E
Sbjct: 212 FEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRGE 271
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R E+ K +F N+YVKNL +S ++E L+ F YG ITSA VM +G
Sbjct: 272 RQNEL-KRRFEQMKQDRQTRYQGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTEG- 329
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM--- 296
G SK FGFV F + ++A +AV +NG K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALAQRKEERKAILTNQYMQRLSTV 389
Query: 297 ----KEAADKFQGANLY 309
+ FQ N Y
Sbjct: 390 QALGRPVMGSFQQPNSY 406
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 156/281 (55%), Gaps = 16/281 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++TFS G ILS +V D+ +S GY ++ F A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G S+ FGFV+FE ++ A +A+ +NG +D++ +VG + ERE EL
Sbjct: 128 CKVACDEHG-SRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFVGHFKSHREREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A N+Y+KNL +D++ L+ LF FG + S KVMRD SG SRG GFV
Sbjct: 184 -------GAQALAFTNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F EEA +A+ MNGK V + LYV AQ++ +R+ L+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELK 277
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M+ + ++LY+ +L + + L + FSP G I S +V RD + S G ++ F
Sbjct: 1 MQAGGQGYPLSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN +++ +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFEVIKGQPIRIMWSQRDPGLR 94
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/373 (58%), Positives = 283/373 (75%), Gaps = 9/373 (2%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F ++SLYVGDL +V++S L+++FNQ+G V ++R+CRD +TRRSL Y Y+N+ N+ +A R
Sbjct: 5 FSSSSLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAER 64
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN TP+ GK R+M+S RDPSLRKSG GNIFIKNLDK +DHKAL+DTFSAFGNILS
Sbjct: 65 ALDTLNNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFGNILS 124
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKV TD SKG+GFV ++++ESA+KAI K+NGM++N+++V+VG F +ER +
Sbjct: 125 CKVVTDETNTSKGFGFVHYESQESAEKAIAKVNGMMINNQKVFVGPFKSSKERGA-TQEV 183
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
K+TNV++KNLSE +E+ L +G IT+ +M D GKSK FGF NFE++D A AV
Sbjct: 184 KYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKGFGFANFEHADAAKGAV 243
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E NGK F K YVG+AQKK ERE ELKH+FE K+QG NLYIKNLDDSID +
Sbjct: 244 ENENGKMFSGKVIYVGRAQKKLEREAELKHKFE-------TKYQGVNLYIKNLDDSIDSD 296
Query: 321 KLKQLFSPFGSITSCKVMRDPSG-ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
KL+ FS +G+ITS KVMRD G S+G GFV +STP+EAS+A+ EM+G+MV SKPLYVA
Sbjct: 297 KLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEASKAVAEMHGRMVGSKPLYVA 356
Query: 380 LAQRKEDRRARLQ 392
AQRK+ RRA+L+
Sbjct: 357 FAQRKDVRRAQLE 369
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 159/280 (56%), Gaps = 12/280 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ V LYD F+ G ++S +V D T S G+G+V++ + + A +A
Sbjct: 94 GIGNIFIKNLDKTVDHKALYDTFSAFGNILSCKVVTD-ETNTSKGFGFVHYESQESAEKA 152
Query: 82 LEMLNFTPLNGKPIRV---MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
+ +N +N + + V S + ++ N+FIKNL + + + L D A G I
Sbjct: 153 IAKVNGMMINNQKVFVGPFKSSKERGATQEVKYTNVFIKNLSEDVSEQQLTDLLQAHGKI 212
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
+ + TD G+SKG+GF F++ ++A+ A+E NG + + K +YVG +K ER+ E+
Sbjct: 213 TNLCIMTDEKGKSKGFGFANFEHADAAKGAVENENGKMFSGKVIYVGRAQKKLEREAEL- 271
Query: 199 KSKF------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS-KCFGFVNFE 251
K KF N+Y+KNL +S + L+ +F YGTITS+ VMRD G S K FGFV +
Sbjct: 272 KHKFETKYQGVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYS 331
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
D+A++AV ++G+ K YV AQ+K R +L+ Q
Sbjct: 332 TPDEASKAVAEMHGRMVGSKPLYVAFAQRKDVRRAQLEAQ 371
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 102/192 (53%), Gaps = 17/192 (8%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVE 261
+++YV +L +E L + F + G + + + RD + S + ++N+ NS DA RA++
Sbjct: 8 SSLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAERALD 67
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN K + S+R+ L+ K N++IKNLD ++D +
Sbjct: 68 TLNNTPIKGKACRI----MWSQRDPSLR------------KSGIGNIFIKNLDKTVDHKA 111
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L FS FG+I SCKV+ D + S+G GFV + + E A +A+ ++NG M+ ++ ++V
Sbjct: 112 LYDTFSAFGNILSCKVVTDETNTSKGFGFVHYESQESAEKAIAKVNGMMINNQKVFVGPF 171
Query: 382 QRKEDRRARLQV 393
+ ++R A +V
Sbjct: 172 KSSKERGATQEV 183
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/394 (56%), Positives = 283/394 (71%), Gaps = 5/394 (1%)
Query: 3 QVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR 62
+V A +N+ G NA + ++YVGDL V ++ L+++F+ +G V SVRVCRD+ TR
Sbjct: 57 KVAAATRNI-GTETNAPSVSSATIYVGDLHPEVNEANLFEVFSAIGPVASVRVCRDIVTR 115
Query: 63 RSLGYGYVNFSNAQEAARALEMLNF---TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL 119
RSLGY YVNF + +A RALE +NF KP+R+M+ +RDP++RKSGAGN+FIKNL
Sbjct: 116 RSLGYAYVNFHSMDDAERALETMNFYACPQTRDKPMRLMWKNRDPTIRKSGAGNVFIKNL 175
Query: 120 DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
DKAID+K L DTFS FGNILSCKVATD G S GYGFV F+N E A+ AI K+NGMLLND
Sbjct: 176 DKAIDNKTLFDTFSVFGNILSCKVATDDEGNSLGYGFVHFENPEDAETAINKVNGMLLND 235
Query: 180 KQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST-TEEDLQKSFGEYGTITSAVVMRDG 238
KQVYVG+F +QER+ FTNVY KNL S TEE +++ F YG ITS V D
Sbjct: 236 KQVYVGYFKSRQEREASEETHIFTNVYTKNLIPSMCTEEKIRELFSLYGEITSVYVPVDE 295
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+ K F FVNF + AA+AVE LNG+ F+ K YVG+AQKK+ERE EL+ + E E
Sbjct: 296 NEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYVGRAQKKAEREAELRRKAENKRAE 355
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358
K+QG NLY++NL D +D+E L++ FS FG++TSC+VMRD G+SRG GFV FSTPEE
Sbjct: 356 ILKKYQGVNLYVRNLPDDMDEEGLRKEFSNFGTLTSCRVMRDDKGVSRGFGFVCFSTPEE 415
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
A++A+ EMNGKM+ KPLYV LAQRKE R+A+L+
Sbjct: 416 ATKAVTEMNGKMMGKKPLYVCLAQRKEIRQAQLE 449
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 153/287 (53%), Gaps = 18/287 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F+ G ++S +V D SLGYG+V+F N ++A A
Sbjct: 166 GAGNVFIKNLDKAIDNKTLFDTFSVFGNILSCKVATD-DEGNSLGYGFVHFENPEDAETA 224
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSLRKSGAGNIFIKNLDKAI-DHKALHDTFSAFG 136
+ +N LN K + V Y R+ S N++ KNL ++ + + + FS +G
Sbjct: 225 INKVNGMLLNDKQVYVGYFKSRQEREASEETHIFTNVYTKNLIPSMCTEEKIRELFSLYG 284
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I S V D N KG+ FV F E A KA+E+LNG K +YVG +K ER+ E
Sbjct: 285 EITSVYVPVDENEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYVGRAQKKAEREAE 344
Query: 197 I------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ K + N+YV+NL + EE L+K F +GT+TS VMRD G S+
Sbjct: 345 LRRKAENKRAEILKKYQGVNLYVRNLPDDMDEEGLRKEFSNFGTLTSCRVMRDDKGVSRG 404
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
FGFV F ++A +AV +NGK K YV AQ+K R+ +L+ Q
Sbjct: 405 FGFVCFSTPEEATKAVTEMNGKMMGKKPLYVCLAQRKEIRQAQLEAQ 451
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 18/196 (9%)
Query: 24 TSLYVGDLEANV-TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T++Y +L ++ T+ ++ +LF+ G++ SV V D G+ +VNF+ + AA+A+
Sbjct: 259 TNVYTKNLIPSMCTEEKIRELFSLYGEITSVYVPVD-ENEVPKGFAFVNFAKPECAAKAV 317
Query: 83 EMLNFTPLNGKPIRV----MYSHRDPSLRKSGAG------------NIFIKNLDKAIDHK 126
E LN GK + V + R+ LR+ N++++NL +D +
Sbjct: 318 EELNGRDFEGKSLYVGRAQKKAEREAELRRKAENKRAEILKKYQGVNLYVRNLPDDMDEE 377
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
L FS FG + SC+V D G S+G+GFV F E A KA+ ++NG ++ K +YV
Sbjct: 378 GLRKEFSNFGTLTSCRVMRDDKGVSRGFGFVCFSTPEEATKAVTEMNGKMMGKKPLYVCL 437
Query: 187 FLRKQERDTEINKSKF 202
RK+ R ++ +
Sbjct: 438 AQRKEIRQAQLEAQRI 453
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/370 (56%), Positives = 290/370 (78%), Gaps = 4/370 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL +VT+S LY++F+ +G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + G+PIR+M+SHRDP LRKSG GNIFIKNL+ +ID+KAL+DTFS FG+ILS KV
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
+ +G S+G+GFV F+ E+AQKAI +NGMLLND++V+VGHF +Q+R+ E+
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKNL + E+ LQ F ++G + S VMRD +G+S+ FGFVNFE ++A +AV+
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG NLY+KNLDDSI+DE+
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G ITS KVM + S S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 369 QRKEERKAIL 378
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 186/347 (53%), Gaps = 27/347 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V + R G+G+V+F + A +A
Sbjct: 97 GMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R G NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GN+ S KV D NGQS+G+GFV F+ E AQKA++ +NG ++ + +YVG ++ ER +
Sbjct: 215 GNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQS 274
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + N+YVKNL +S +E L++ F YG ITSA VM + SK
Sbjct: 275 ELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESS-HSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA-DK 302
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRPSHPVLSS 393
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
FQ Y L ++ + ++ GSIT + DP ++ G
Sbjct: 394 FQQPTSY---LLPAVPQSTAQAVYYSSGSITPMQP--DPRWTAQPHG 435
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 162/281 (57%), Gaps = 16/281 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS GNILS +V D+ +S GY ++ F A++A++
Sbjct: 12 SLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + RD + KS N+++KNL S + L +F +G+I S
Sbjct: 72 MNFEVIKGQPIRI----MWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ V+ + G S+ FGFV+FE + A +A+ +NG +D++ +VG + + +RE EL
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A N+Y+KNL ++D+++L+ LFS FG++ S KVMRD +G SRG GFV
Sbjct: 184 -------GARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F EEA +A+ MNGK V + LYV AQ++ +R++ L+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELK 277
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 119/211 (56%), Gaps = 23/211 (10%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A G T++YV +L ANV + +L DLF+Q G + SV+V RD S +S G+G+VNF +E
Sbjct: 185 ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRGFGFVNFEKHEE 243
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKS------------GAGNIFIKNLDK 121
A +A++ +N ++G+ + V + R L++ N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+I+ + L + FS +G I S KV T+ + SKG+GFV F + E A KA+ ++NG ++ K
Sbjct: 304 SINDERLKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 362
Query: 182 VYVGHFLRKQERDTEINKSKFTNVYVKNLSE 212
+YV RK+ER K+ TN Y + S
Sbjct: 363 LYVALAQRKEER-----KAILTNQYRRRPSH 388
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/384 (55%), Positives = 287/384 (74%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNLD +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG S+G+GFV F+ E+A +AI +NGMLLND++V+VGHF +QER+
Sbjct: 123 GNILSCKVVCDENG-SRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKSRQEREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKN +E LQ+ F ++G S VM D +G+S+ FGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDENGQSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + YVG+AQK+SER+ ELK +FEQ +E +++QG NLY+KNL
Sbjct: 242 EEAQKAVSNMNGKELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDIIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 374 KPLYVALAQRKEDRRARLQVCLLQ 397
KPLYVALAQRKE+R+A L +Q
Sbjct: 361 KPLYVALAQRKEERKAILTSQYMQ 384
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 165/293 (56%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + R G+G+V+F + A +A
Sbjct: 97 GIGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDENGSR--GFGFVHFETHEAANQA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R NI++KN + +D + L + FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRQEREAELGARALEFTNIYVKNFEGDMDDECLQELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NGQS+G+GFV F+ E AQKA+ +NG L + +YVG ++ ER +
Sbjct: 215 GKTLSVKVMVDENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYVGRAQKRSERQS 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E +N+ + N+YVKNL + +E L+K F YG ITSA VM +G G SK
Sbjct: 275 ELKRRFEQMKQERVNRYQGVNLYVKNLDDIIDDEKLRKEFSPYGVITSAKVMTEG-GHSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L Q+ Q +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTSQYMQRL 386
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 164/292 (56%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FSA G I+S +V D+ +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRI----MWSQRDPGLRKSGIGNIFIKNLDDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D +G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDENG-SRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KN + +DDE L++LFS FG S KVM D
Sbjct: 176 RQEREAEL----------GARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G SRG GFV F EEA +A+ MNGK + + LYV AQ++ +R++ L+
Sbjct: 226 ENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYVGRAQKRSERQSELK 277
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/369 (57%), Positives = 283/369 (76%), Gaps = 4/369 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RV RD+ TRRSLGY VNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLR+SG GN+FIKNL+K ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
D NG SKG+GFV F+ EE+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +F
Sbjct: 132 CDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN + ++ L FG +G + S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K YVG AQKK +R +ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 QKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 370 RKEERQAHL 378
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 166/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + LYD F+ G ++S +V D + S G+G+V+F + A RA
Sbjct: 97 GVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG--SKGHGFVHFETEEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V R+ L R N++IKN +D K L+ F F
Sbjct: 155 IEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV TD G+SKG+GFV F+ E AQKA++++NG LN K +YVG +K +R
Sbjct: 215 GQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHI 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E LQK F +GTITS VM +G G+S
Sbjct: 275 EL-KRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQRM 386
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 160/282 (56%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS+ G ILS +V D + +S GY V F+ A++A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K V + +RD + +S NV++KNL+++ + L +F +G I
Sbjct: 71 TMNFDVIKGKPVRI----MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGT 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ ++ N+YIKN D +DD+ L LF FG + S KVM D G S+G GF
Sbjct: 186 RTKEF----------TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F E+A +A+ EMNGK + K +YV AQ+K DR L+
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELK 277
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/413 (54%), Positives = 291/413 (70%), Gaps = 31/413 (7%)
Query: 8 GQNVNG--GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 65
GQ NG A+A F + SLYVGDL +VT++ L+++FN +G V S+RVCRD TRRSL
Sbjct: 66 GQRPNGLNAAASAANFVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSL 125
Query: 66 GYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDH 125
GY YVN+ Q+A R+L+ LN+T + G+P R+M+ HRDPSLRKSG GNIF+KNLDK ID+
Sbjct: 126 GYAYVNYQGIQDAERSLDTLNYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDN 185
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
KAL+DTFS FGNILSCKVA D NG SKGYGFV ++NEESA+ AI+K+NGML+ K VYVG
Sbjct: 186 KALYDTFSLFGNILSCKVAVDENGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVG 245
Query: 186 HFLRKQERDTEINKSKFTNVYVKNLSESTTEE-DLQKSFGEYGTITSAVVMRDGDGKSKC 244
F+R+ ERD + ++K+TNVY+KN+ + +E L+++F +YG+ITS VV +D G +
Sbjct: 246 PFIRRAERDN-LAETKYTNVYIKNMPSAWEDEARLRETFAKYGSITSLVVRKDPKG--RL 302
Query: 245 FGFVNFENSDDAARAVEALNGKKFDD----KE---------------------WYVGKAQ 279
F F NF + D A AVEALNGK+ D KE +VG Q
Sbjct: 303 FAFCNFADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKDEEGQKREGEQILFVGPHQ 362
Query: 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
K+ R L+ +FEQ ++ D+FQG NLYIKN+DDSIDDEKL+QLF PFGSITS KVMR
Sbjct: 363 SKAHRSAMLRAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMR 422
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
D G+SR GFV F +PEEA++A+ EM+ K+V KPLYV LA+R+E R RLQ
Sbjct: 423 DERGVSRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRLMRLQ 475
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 164/314 (52%), Gaps = 48/314 (15%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ N+ + LYD F+ G ++S +V D S GYG+V++ N + A A
Sbjct: 170 GNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVAVD-ENGHSKGYGFVHYENEESARSA 228
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNLDKAIDHKA-LHDTFSAFG 136
++ +N + GK + V + RD +L ++ N++IKN+ A + +A L +TF+ +G
Sbjct: 229 IDKVNGMLIGGKTVYVGPFIRRAERD-NLAETKYTNVYIKNMPSAWEDEARLRETFAKYG 287
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND----------------- 179
+I S V D G + + F F + +SA+ A+E LNG + D
Sbjct: 288 SITSLVVRKDPKG--RLFAFCNFADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKDE 345
Query: 180 --------KQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEED 218
+ ++VG K R + ++KF N+Y+KN+ +S +E
Sbjct: 346 EGQKREGEQILFVGPHQSKAHRSAML-RAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEK 404
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L++ F +G+ITSA VMRD G S+CFGFV F + ++A +AV ++ K K YVG A
Sbjct: 405 LRQLFEPFGSITSAKVMRDERGVSRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLA 464
Query: 279 QKKSERELELKHQF 292
+++ +R + L+ +F
Sbjct: 465 ERREQRLMRLQQRF 478
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/378 (56%), Positives = 287/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 164/294 (55%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ ER
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G G S
Sbjct: 275 EL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELK 277
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 231/433 (53%), Positives = 298/433 (68%), Gaps = 50/433 (11%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL ++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQE-------------------------------------------AARALEMLNF 87
NF + A RAL+ +NF
Sbjct: 58 NFQQPADVVVNVVTQRGFTRMAACVPHTCLANVPTIVPTMLDPRPHSTVNAERALDTMNF 117
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+ G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA D
Sbjct: 118 DMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDE 177
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-FTNV 205
+G SKGYGFV F+ EE+A K+I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K FTNV
Sbjct: 178 SGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNV 237
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNG 265
YVKN E TE+ L+ F +YGTITS VM DGKS+ FGFV FE+ D A +AV LNG
Sbjct: 238 YVKNFGEDMTEDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNG 297
Query: 266 KKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG NLY+KNLDD+IDDE+L++
Sbjct: 298 KEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRK 357
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMNG++V SKPLYVALAQRK
Sbjct: 358 EFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRK 416
Query: 385 EDRRARLQVCLLQ 397
EDR+A L +Q
Sbjct: 417 EDRKAHLASQYMQ 429
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 169/294 (57%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 140 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGA-SKGYGFVHFETEEAANKS 198
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + + L D F +
Sbjct: 199 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTEDKLKDMFEKY 258
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 259 GTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCMYVGRAQKKAERQ 318
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL ++ +E L+K F +GTITSA VM + +G+S
Sbjct: 319 QELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRS 377
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 378 KGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRM 431
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/354 (59%), Positives = 277/354 (78%), Gaps = 4/354 (1%)
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+ +NF + GKP+R+M+
Sbjct: 2 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F
Sbjct: 62 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHF 120
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEE 217
+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E +E
Sbjct: 121 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDE 180
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L+ FG++G S VM D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+
Sbjct: 181 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 240
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KV
Sbjct: 241 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 300
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
M + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 301 MME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 353
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 72 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 129
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 130 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 189
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 190 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 249
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 250 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 307
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 308 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 361
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 156/266 (58%), Gaps = 16/266 (6%)
Query: 128 LHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
L++ FS G ILS +V D+ +S GY +V F A++A++ +N ++ K V +
Sbjct: 2 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 187 FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
+RD + KS N+++KNL +S + L +F +G I S V+ D +G SK +G
Sbjct: 62 ----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYG 116
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
FV+FE + A RA+E +NG +D++ +VG+ + + ERE EL + A +F
Sbjct: 117 FVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR--------AKEF--T 166
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N+YIKN + +DDE+LK LF FG S KVM D SG S+G GFV+F E+A +A+ EM
Sbjct: 167 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 226
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQ 392
NGK + K +YV AQ+K +R+ L+
Sbjct: 227 NGKELNGKQIYVGRAQKKVERQTELK 252
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/412 (54%), Positives = 291/412 (70%), Gaps = 30/412 (7%)
Query: 8 GQNVNGG-GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
GQ NGG A A F + SLYVGDL +VT++ L+++FN +G V S+RVCRD TRRSLG
Sbjct: 66 GQRPNGGMNAGAANFVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLG 125
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVN+ Q+A R+L+ LN+T + G+P R+M+ HRDPSLRKSG GNIF+KNLDK ID+K
Sbjct: 126 YAYVNYQGIQDAERSLDTLNYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNK 185
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FGNILSCKVA D NG SKGYGFV ++NEESA+ AI+K+NGML+ K VYVG
Sbjct: 186 ALYDTFSLFGNILSCKVAVDDNGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGP 245
Query: 187 FLRKQERDTEINKSKFTNVYVKNLSESTTEED-LQKSFGEYGTITSAVVMRDGDGKSKCF 245
F+R+ ERD + ++K+TNVY+KN+ + +E L+++F ++G+ITS VV +D G + F
Sbjct: 246 FIRRAERDN-LAEAKYTNVYIKNMPSAWEDESRLRETFSKFGSITSLVVRKDPKG--RLF 302
Query: 246 GFVNFENSDDAARAVEALNGKKFDD----KE---------------------WYVGKAQK 280
F NF + D A AVEALNGK+ D KE +VG Q
Sbjct: 303 AFCNFADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKEEEGQKREGDQILFVGPHQS 362
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
K+ R L+ +FEQ ++ D+FQG NLYIKN+DDSIDDEKL+QLF PFGSITS KVMRD
Sbjct: 363 KAHRSAMLRAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRD 422
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G+SR GFV F +PEEA++A+ EM+ K+V KPLYV LA+R+E R RLQ
Sbjct: 423 ERGVSRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRLMRLQ 474
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 168/328 (51%), Gaps = 49/328 (14%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ N+ + LYD F+ G ++S +V D S GYG+V++ N + A A
Sbjct: 169 GNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVAVD-DNGHSKGYGFVHYENEESARSA 227
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNLDKAI-DHKALHDTFSAFG 136
++ +N + GK + V + RD +L ++ N++IKN+ A D L +TFS FG
Sbjct: 228 IDKVNGMLIGGKTVYVGPFIRRAERD-NLAEAKYTNVYIKNMPSAWEDESRLRETFSKFG 286
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND----------------- 179
+I S V D G + + F F + +SA+ A+E LNG + D
Sbjct: 287 SITSLVVRKDPKG--RLFAFCNFADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKEE 344
Query: 180 --------KQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEED 218
+ ++VG K R + ++KF N+Y+KN+ +S +E
Sbjct: 345 EGQKREGDQILFVGPHQSKAHRSAML-RAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEK 403
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L++ F +G+ITSA VMRD G S+CFGFV F + ++A +AV ++ K K YVG A
Sbjct: 404 LRQLFEPFGSITSAKVMRDERGVSRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLA 463
Query: 279 QKKSERELELKHQFE-QNMKEAADKFQG 305
+++ +R + L+ +F +++ AA G
Sbjct: 464 ERREQRLMRLQQRFRLPSLRPAAAALPG 491
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/384 (55%), Positives = 289/384 (75%), Gaps = 9/384 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N +G G + SLYVGDL A+VT++ LY+ F G ++S+RVCRD++TRRSL Y Y
Sbjct: 2 NASGPG-----YPLASLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFS FGNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF
Sbjct: 117 DTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E+ +FTN+YVKNL E+ LQ F ++G + S VM+D +G S+ FGF
Sbjct: 176 RREREAELRARAMEFTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VNFE ++A +AV +NGK+ ++ YVG+AQK+ ER+ ELK +FEQ ++ +++QG N
Sbjct: 236 VNFEKHEEAQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQDRLNRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARL 391
G+++ +KPLYVALAQRKE+RRA L
Sbjct: 355 GRIIGTKPLYVALAQRKEERRAIL 378
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 166/293 (56%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ LR NI++KNL +D + L D FS F
Sbjct: 155 ISTMNGMLLNDRKVFVGHFKSRREREAELRARAMEFTNIYVKNLQVDMDEQGLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D NG S+G+GFV F+ E AQKA+ +NG ++ +Q+YVG ++ ER
Sbjct: 215 GKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYVGRAQKRVERQN 274
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + N+YVKNL +S +E L+K F YG ITSA VM +G G SK
Sbjct: 275 ELKRKFEQMKQDRLNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER L +Q+ Q +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQRKEERRAILSNQYMQRL 386
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 162/289 (56%), Gaps = 20/289 (6%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG G ++++ +L + L++ F G ILS +V D+ +S Y ++ F
Sbjct: 4 SGPGYPLASLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRRE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL+ A + N+Y+KNL +D++ L+ LFS FG + S KVM+D +G
Sbjct: 179 REAELR----------ARAMEFTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDNNG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SRG GFV F EEA +A+++MNGK V + LYV AQ++ +R+ L+
Sbjct: 229 HSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELK 277
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/376 (58%), Positives = 280/376 (74%), Gaps = 9/376 (2%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A F ++SLYVGDL +VTDSQL+++FNQ+G V ++R+CRD +TRRSL Y YVN+ N +
Sbjct: 2 AASFSSSSLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPAD 61
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ LN T + GK R+M+S RDPSLRKSG GNIFIKNLDK++DHKAL DTFSAFGN
Sbjct: 62 AERALDTLNNTLVKGKACRIMWSQRDPSLRKSGVGNIFIKNLDKSVDHKALFDTFSAFGN 121
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV TD SKG+GFV +++++SA KAI K+NGM++ND++V+VG F +ER +
Sbjct: 122 ILSCKVVTDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVGPFKSSKERG-QT 180
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+ K+TNVYVKNLSE EE+L+ YG IT+ +M D KSK FGF NFE D+A
Sbjct: 181 QELKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAK 240
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
VEA NGK F K YVG+AQKK ERE ELKH+FE K+QG NLYIKN+DDSI
Sbjct: 241 NCVEAENGKLFHGKVIYVGRAQKKMEREAELKHKFE-------TKYQGVNLYIKNIDDSI 293
Query: 318 DDEKLKQLFSPFGSITSCKVMR-DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
D +KL+ F+ +G+ITS KVMR D S S+G GFV ++TP+EAS+A+ EM+G+MV +KPL
Sbjct: 294 DSDKLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCYTTPDEASKAVAEMHGRMVGNKPL 353
Query: 377 YVALAQRKEDRRARLQ 392
YVA AQRKE RR L+
Sbjct: 354 YVAFAQRKEIRRQHLE 369
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 154/280 (55%), Gaps = 12/280 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ +V L+D F+ G ++S +V D T S G+G+V++ + A +A
Sbjct: 94 GVGNIFIKNLDKSVDHKALFDTFSAFGNILSCKVVTD-ETNVSKGFGFVHYESQDSADKA 152
Query: 82 LEMLNFTPLNGKPIRV---MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
+ +N +N + + V S ++ N+++KNL + ++ + L D +G I
Sbjct: 153 IMKVNGMIINDQKVFVGPFKSSKERGQTQELKYTNVYVKNLSEDVNEEELRDLLVPYGKI 212
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
+ + +D +SKG+GF F+ + A+ +E NG L + K +YVG +K ER+ E+
Sbjct: 213 TNLTIMSDEKSKSKGFGFANFETPDEAKNCVEAENGKLFHGKVIYVGRAQKKMEREAEL- 271
Query: 199 KSKF------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG-KSKCFGFVNFE 251
K KF N+Y+KN+ +S + L+ +F YGTITSA VMRD SK FGFV +
Sbjct: 272 KHKFETKYQGVNLYIKNIDDSIDSDKLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCYT 331
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
D+A++AV ++G+ +K YV AQ+K R L+ Q
Sbjct: 332 TPDEASKAVAEMHGRMVGNKPLYVAFAQRKEIRRQHLEAQ 371
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/384 (54%), Positives = 287/384 (74%), Gaps = 9/384 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N +G G + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+++RRSLGY Y
Sbjct: 2 NASGPG-----YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+P+R+M+S RDP LRKSG GN+FIKNLD +ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D NG S+G+GFV F+ +E+A +AIE +NGMLLND++V+VGHF
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN + + L++ F +G S VM D G+SK FGF
Sbjct: 176 RKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VNFE ++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E ++QG N
Sbjct: 236 VNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDDE+L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARL 391
G++V +KPLYVALAQRKE+R+A L
Sbjct: 355 GRIVSTKPLYVALAQRKEERKAIL 378
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 166/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + R G+G+V+F + A RA
Sbjct: 97 GVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSR--GHGFVHFETQEAATRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D L + FS F
Sbjct: 155 IETMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D G+SKG+GFV F+ E AQKA+ +NG +N + VYVG ++ ER +
Sbjct: 215 GKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQS 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F YGTITSA VM +G G S
Sbjct: 275 EL-KRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 164/292 (56%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G ILS +V D+ + +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + V + +RD + KS NV++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGRPVRI----MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D +G S+ GFV+FE + A RA+E +NG +D++ +VG +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE E A + N+YIKN D +DD +L+++FS FG S KVM D
Sbjct: 176 RKEREAEF----------GARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G S+G GFV F EEA +A+ +MNGK + + +YV AQ++ +R++ L+
Sbjct: 226 NTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELK 277
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/384 (57%), Positives = 288/384 (75%), Gaps = 7/384 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F + SLYVGDL VT++QL+++FN +G VVS+RVCRD TRRSLGY YVNF A +A R
Sbjct: 42 FPSGSLYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAER 101
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN++ + GKP R+M+S RDP++RKSG GN+FIKNLDK ID+KAL DTFSAFGNILS
Sbjct: 102 ALDTLNYSLIRGKPCRIMWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFGNILS 161
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK- 199
CKV TD NG SKGYGFV ++ +E+A+ AI K+NGM++N KQV+VG F+ ++ER E+ +
Sbjct: 162 CKVVTDENG-SKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIFVPRKER-VELGEG 219
Query: 200 -SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
+KFTNV+VKNL E TT+ L F ++G ITS V+M+ D KSK FGFV +E +DA
Sbjct: 220 VTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQ 279
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
AV ALNG + K +V +AQKK+ERE ELK +++ E +K+QG NLY+KNLDD+I
Sbjct: 280 AAVNALNGTELAGKTLFVARAQKKAEREAELKQRYDALRLERINKYQGINLYVKNLDDAI 339
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKP 375
D++K++ F+PFG+ITS K+MRD G SRG GF+ FS+ EEA++A+ EMNG+ + KP
Sbjct: 340 DEDKIRTEFAPFGTITSVKIMRDEKGKSRGFGFICFSSAEEATKAVTEMNGQTIQGFPKP 399
Query: 376 LYVALAQRKEDRRARLQVCLLQCR 399
LYVALAQR EDRRA+L Q R
Sbjct: 400 LYVALAQRAEDRRAQLAAHFAQQR 423
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/376 (57%), Positives = 284/376 (75%), Gaps = 1/376 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALE 83
SLYVGDLEA+V + QL LF+Q+ V S VCRD++ R+SLGYGYVNF + ++A RA+E
Sbjct: 85 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 144
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNFT +NGKPIRVM+S+RDP+LRKSG N+FIKNL+ ID+K+L++ FS+FG ILS KV
Sbjct: 145 NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 204
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
ATD NG+SKGYGF+QF++E SA+ AI LNGML N ++++VG F+R+QER+ + + FT
Sbjct: 205 ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT 264
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL + ++ DL F +G ITSA+VMRD +G S+CFGFVNFE S+ A AV+ L
Sbjct: 265 NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL 324
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NGK D YV +AQKKSER+ ELK +FE + + +K Q NLY+KNLDD I+DE L+
Sbjct: 325 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 384
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+LF FG + SCKVM D G S+G GFV+F+T E+A+ A+L+MNGKMV KPLYVA+AQR
Sbjct: 385 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 444
Query: 384 KEDRRARLQVCLLQCR 399
KE+R+A L + R
Sbjct: 445 KEERKAFLAAHFARVR 460
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 151/288 (52%), Gaps = 19/288 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE N+ + LY++F+ G ++S +V D + + S GYG++ F + A A
Sbjct: 171 GLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGK-SKGYGFIQFESESSAKDA 229
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN----IFIKNLDKAIDHKALHDTFSAFGN 137
+ LN NG+ I V R +G N +++KNL K L + FS+FG
Sbjct: 230 INGLNGMLANGQKIFVGLFIRRQEREHTGDANNFTNVYVKNLPKHFSDNDLLNEFSSFGA 289
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
I S V D NG S+ +GFV F+ E A+ A++ LNG + D +YV +K ER E+
Sbjct: 290 ITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAEL 349
Query: 198 NKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
K+KF N+Y+KNL + +E L+K F +G + S VM D G+SK
Sbjct: 350 -KAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKG 408
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
GFV+F +DA A+ +NGK K YV AQ+K ER+ L F
Sbjct: 409 CGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHF 456
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/376 (57%), Positives = 284/376 (75%), Gaps = 1/376 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALE 83
SLYVGDLEA+V + QL LF+Q+ V S VCRD++ R+SLGYGYVNF + ++A RA+E
Sbjct: 61 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 120
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNFT +NGKPIRVM+S+RDP+LRKSG N+FIKNL+ ID+K+L++ FS+FG ILS KV
Sbjct: 121 NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 180
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
ATD NG+SKGYGF+QF++E SA+ AI LNGML N ++++VG F+R+QER+ + + FT
Sbjct: 181 ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT 240
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL + ++ DL F +G ITSA+VMRD +G S+CFGFVNFE S+ A AV+ L
Sbjct: 241 NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL 300
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NGK D YV +AQKKSER+ ELK +FE + + +K Q NLY+KNLDD I+DE L+
Sbjct: 301 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 360
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+LF FG + SCKVM D G S+G GFV+F+T E+A+ A+L+MNGKMV KPLYVA+AQR
Sbjct: 361 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 420
Query: 384 KEDRRARLQVCLLQCR 399
KE+R+A L + R
Sbjct: 421 KEERKAFLAAHFARVR 436
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 151/288 (52%), Gaps = 19/288 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE N+ + LY++F+ G ++S +V D + + S GYG++ F + A A
Sbjct: 147 GLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGK-SKGYGFIQFESESSAKDA 205
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN----IFIKNLDKAIDHKALHDTFSAFGN 137
+ LN NG+ I V R +G N +++KNL K L + FS+FG
Sbjct: 206 INGLNGMLANGQKIFVGLFIRRQEREHTGDANNFTNVYVKNLPKHFSDNDLLNEFSSFGA 265
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
I S V D NG S+ +GFV F+ E A+ A++ LNG + D +YV +K ER E+
Sbjct: 266 ITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAEL 325
Query: 198 NKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
K+KF N+Y+KNL + +E L+K F +G + S VM D G+SK
Sbjct: 326 -KAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKG 384
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
GFV+F +DA A+ +NGK K YV AQ+K ER+ L F
Sbjct: 385 CGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHF 432
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/378 (55%), Positives = 285/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIRGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDNHG-SRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVTDMNGKEVRGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRREFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 165/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D S G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--NHGSRGFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R NI++KNL +D + L D FS F
Sbjct: 155 IVTMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D +G S+G+GFV F+ E AQKA+ +NG + + +YVG ++ ER
Sbjct: 215 GKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYVGRAQKRVERQN 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K +F N+YVKNL +S +E L++ F YG ITSA VM +G G S
Sbjct: 275 EL-KRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRREFSPYGVITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 163/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIRGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDNHG-SRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SRG GFV F EEA +A+ +MNGK V + LYV AQ++ +R+ L+
Sbjct: 226 DSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYVGRAQKRVERQNELK 277
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/373 (56%), Positives = 284/373 (76%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY F+ G ++S+RVCRD+ TRRSLGY YVNF +A
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAEC 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +N+ + G+PIR+M+S RDP LRKSG GNIFIKN+D++ID+KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKV D G SKGYGFV F+ +E+A +AIE +NGMLLND++V+VGHF ++ER+ E
Sbjct: 128 CKVVCDEKG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGSK 186
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
KFTNVY+KN E T+E L++ F +G S VM+D G+S+ FGFVN+ + +DA +
Sbjct: 187 AMKFTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV +NGK+ + K YVG+AQK+ ER+ ELK +F+Q ++ ++QG NLY+KNLDDSID
Sbjct: 247 AVNEMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ F+P+G+ITS KVM D S S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKEFAPYGTITSAKVMTDGSQ-SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQR+E+R+A L
Sbjct: 366 ALAQRREERKAIL 378
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +++ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCD--EKGSKGYGFVHFETQEAANRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + G+ N++IKN + + L + FSAF
Sbjct: 155 IETMNGMLLNDRKVFVGHFKSRKEREVEFGSKAMKFTNVYIKNFGEDFTDEKLKEVFSAF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS +V D G+S+G+GFV + + E AQKA+ ++NG +N K +YVG ++ ER
Sbjct: 215 GRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVNEMNGKEINGKILYVGRAQKRLERQG 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL +S +E L+K F YGTITSA VM DG +S
Sbjct: 275 EL-KRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGS-QS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ++ ER+ L +++ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQRL 386
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 159/282 (56%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L+ FS G I+S +V D+ +S GY +V F A+ A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ + + + +RD + KS N+++KN+ ES + L +F +G I
Sbjct: 71 TMNYDVIKGRPIRI----MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D G SK +GFV+FE + A RA+E +NG +D++ +VG + + ERE+E
Sbjct: 127 SCKVVCDEKG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGS 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A KF N+YIKN + DEKLK++FS FG S +VM+D G SRG GF
Sbjct: 186 K--------AMKF--TNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V ++ E+A +A+ EMNGK + K LYV AQ++ +R+ L+
Sbjct: 236 VNYAHHEDAQKAVNEMNGKEINGKILYVGRAQKRLERQGELK 277
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M + + A+LY+ +L + + L Q FSP G I S +V RD I+R G +V
Sbjct: 1 MNSSGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRD--IITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F P +A AL MN ++ +P+ + +QR
Sbjct: 59 FQQPADAECALDTMNYDVIKGRPIRIMWSQR 89
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/379 (56%), Positives = 284/379 (74%), Gaps = 11/379 (2%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGD+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVNF N +A R
Sbjct: 73 FQTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNLVDAER 132
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NFT + G P R+M+S RDPSLRKSG GNIF+KNLD +ID+KAL+DTFS FGNILS
Sbjct: 133 ALDTMNFTCIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDPSIDNKALYDTFSLFGNILS 192
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER-DTEINK 199
CKVA D GQSKGYG+V ++ E+A +AI K+NGML+ +V+VGHF ++QER D E
Sbjct: 193 CKVANDPTGQSKGYGYVHYETAEAATEAINKINGMLIAGTEVFVGHFQKRQERPDIE--- 249
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS-KCFGFVNFENSDDAAR 258
+TN YVKNL T+ DL++ F +G + SAVVM+D + + + FGFVN+E++D A
Sbjct: 250 -DWTNCYVKNLPTQWTDADLRREFEPFGQVNSAVVMKDPNSATNRGFGFVNYEDADGAHA 308
Query: 259 AVEALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
AVE L+GK F D E YVGKAQK++ERE EL+ +F+Q E +K+QG NLY+KNL
Sbjct: 309 AVEGLSGKTFKGVNGVDLELYVGKAQKRTERERELRQKFDQLKLERINKYQGVNLYVKNL 368
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD + DE+L++ F+ +G+ITS +VMRD +G SRG GFV FSTPEEA+ A+ EMNGK++
Sbjct: 369 DDLLQDEELREAFTNYGTITSARVMRDSTGNSRGFGFVCFSTPEEAATAVAEMNGKLITG 428
Query: 374 KPLYVALAQRKEDRRARLQ 392
KP+YVA AQRKE RRA+L+
Sbjct: 429 KPVYVAFAQRKEVRRAQLE 447
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 153/292 (52%), Gaps = 20/292 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD F+ G ++S +V D T +S GYGYV++ A+ A A
Sbjct: 162 GVGNIFVKNLDPSIDNKALYDTFSLFGNILSCKVAND-PTGQSKGYGYVHYETAEAATEA 220
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
+ +N + G + V + R N ++KNL L F FG + S
Sbjct: 221 INKINGMLIAGTEVFVGHFQKRQERPDIEDWTNCYVKNLPTQWTDADLRREFEPFGQVNS 280
Query: 141 CKVATDLNGQS-KGYGFVQFDNEESAQKAIEKLNGMLLN-----DKQVYVGHFLRKQERD 194
V D N + +G+GFV +++ + A A+E L+G D ++YVG ++ ER+
Sbjct: 281 AVVMKDPNSATNRGFGFVNYEDADGAHAAVEGLSGKTFKGVNGVDLELYVGKAQKRTERE 340
Query: 195 TE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E INK + N+YVKNL + +E+L+++F YGTITSA VMRD G S
Sbjct: 341 RELRQKFDQLKLERINKYQGVNLYVKNLDDLLQDEELREAFTNYGTITSARVMRDSTGNS 400
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ FGFV F ++AA AV +NGK K YV AQ+K R +L+ Q Q
Sbjct: 401 RGFGFVCFSTPEEAATAVAEMNGKLITGKPVYVAFAQRKEVRRAQLEAQHAQ 452
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/373 (56%), Positives = 281/373 (75%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TR S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL +NF + GKP+R+M+S RDPSLRK G GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALHTMNFDVIKGKPLRIMWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L + FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLWKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAYL 378
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 130/371 (35%), Positives = 194/371 (52%), Gaps = 35/371 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E L K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLWKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM------- 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRTASVRAVP 393
Query: 297 ---KEAADKFQGANLYIKNLDDSIDDEKLKQL-FSPFGSITSCK---VMRDPSGISRGSG 349
+ F A +N ++ QL SP + + PS I G+
Sbjct: 394 NQRAPPSGYFMAAVPQTQNHAAYYPPSQVAQLRPSPRWTAQGARPHPFQNKPSAIRPGAP 453
Query: 350 FVAFSTPEEAS 360
V FST AS
Sbjct: 454 RVPFSTMRPAS 464
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 165/298 (55%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A+ +N ++ K + + +RD + K N++VKNL +S + L
Sbjct: 62 PKDAEHALHTMNFDVIKGKPLRIMW----SQRDPSLRKRGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ Q +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+RGS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
F P++A AL MN ++ KPL + +QR R R
Sbjct: 59 FQHPKDAEHALHTMNFDVIKGKPLRIMWSQRDPSLRKR 96
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/373 (56%), Positives = 281/373 (75%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TR S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL +NF + GKP+R+M+S RDPSLRK G GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALHTMNFDVIKGKPLRIMWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L + FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLWKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAYL 378
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 130/371 (35%), Positives = 194/371 (52%), Gaps = 35/371 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E L K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLWKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM------- 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRTASVRAVP 393
Query: 297 ---KEAADKFQGANLYIKNLDDSIDDEKLKQL-FSPFGSITSCK---VMRDPSGISRGSG 349
+ F A +N ++ QL SP + + PS I G+
Sbjct: 394 NQRAPPSGYFMAAVPQTQNHAAYYPPSQVAQLRPSPRWTAQGARPHPFQNKPSAIRPGAP 453
Query: 350 FVAFSTPEEAS 360
V FST AS
Sbjct: 454 RVPFSTMRPAS 464
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 165/298 (55%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A+ +N ++ K + + +RD + K N++VKNL +S + L
Sbjct: 62 PKDAEHALHTMNFDVIKGKPLRIMW----SQRDPSLRKRGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ Q +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+RGS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
F P++A AL MN ++ KPL + +QR R R
Sbjct: 59 FQHPKDAEHALHTMNFDVIKGKPLRIMWSQRDPSLRKR 96
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/378 (55%), Positives = 283/378 (74%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E LQ F ++G I S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ F+P+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRKEFAPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 170/298 (57%), Gaps = 31/298 (10%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +LE ++ + LYD F+ G ++S +V C D +R G+G+V+F + A
Sbjct: 97 GVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR---GFGFVHFETHEAAQN 153
Query: 81 ALEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDT 131
A+ +N LN + + V + S R+ R++ G NI++KNL +D + L D
Sbjct: 154 AIRTMNGMLLNDRKVFVGHFKSRRE---REAELGARALEFTNIYVKNLHVDVDERCLQDL 210
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FS FG ILS KV D +G S+G+GFV F+ E AQKA+ +NG ++ + +YVG ++
Sbjct: 211 FSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRV 270
Query: 192 ERDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
ER E+ K +F N+YVKNL +S +E L+K F YG ITSA VM +G
Sbjct: 271 ERQNEL-KRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEG 329
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 -GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYIQRL 386
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 160/289 (55%), Gaps = 20/289 (6%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 4 SGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N ++ + + + +RD + KS NV++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V+ D G S+ FGFV+FE + A A+ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRRE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL A + N+Y+KNL +D+ L+ LFS FG I S KVMRD SG
Sbjct: 179 REAEL----------GARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SRG GFV F E+A +A+ +MNGK V + LYV AQ++ +R+ L+
Sbjct: 229 HSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELK 277
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/370 (56%), Positives = 289/370 (78%), Gaps = 4/370 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL +VT++ LY++F+ +G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 74 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 133
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + G+PIR+M+SHRDP LRKSG GNIFIKNL+ +ID+KAL+DTFS FG+ILS KV
Sbjct: 134 TMNFEMIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 193
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
+ +G S+G+GFV F+ E+AQKAI +NGMLLND++V+VGHF +Q+R+ E+
Sbjct: 194 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 252
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL E+ LQ F ++G + S VMRD +G+S+ FGFVNFE ++A +AV+
Sbjct: 253 FTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 312
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG NLY+KNLDDSI+DE+
Sbjct: 313 HMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKNLDDSINDER 372
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G ITS KVM + S S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALA
Sbjct: 373 LKEVFSAYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 431
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 432 QRKEERKAIL 441
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 187/354 (52%), Gaps = 27/354 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V + R G+G+V+F + A +A
Sbjct: 160 GMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKA 217
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R G N+++KNL +D + L D FS F
Sbjct: 218 INTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQF 277
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G + S KV D NGQS+G+GFV F+ E AQKA++ +NG + + +YVG ++ ER +
Sbjct: 278 GKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQS 337
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + N+YVKNL +S +E L++ F YG ITSA VM + SK
Sbjct: 338 ELKRRFEQVKQERQNRYQGVNLYVKNLDDSINDERLKEVFSAYGVITSAKVMTESS-HSK 396
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM-KEAADK 302
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ + + +
Sbjct: 397 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRQLSRPVLSS 456
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
FQ Y L ++ + ++ +GS + + DP + G + P
Sbjct: 457 FQQPTNY---LLSAVSQSTAQAVY--YGSGSMAPMQPDPRWAVQPHGPSSTCPP 505
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 165/304 (54%), Gaps = 16/304 (5%)
Query: 90 LNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-N 148
L G P + DP + ++++ +L + L++ FS G ILS +V D+
Sbjct: 52 LLGDPFLGALNTMDPGGQACALSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVAT 111
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVK 208
+S GY ++ F A++A++ +N ++ + + + RD + KS N+++K
Sbjct: 112 RRSLGYAYINFQQPADAERALDTMNFEMIKGQPIRI----MWSHRDPGLRKSGMGNIFIK 167
Query: 209 NLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF 268
NL S + L +F +G+I S+ V+ + G S+ FGFV+FE + A +A+ +NG
Sbjct: 168 NLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLL 226
Query: 269 DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
+D++ +VG + + +RE EL A N+Y+KNL +D++ L+ LFS
Sbjct: 227 NDRKVFVGHFKSRQKREAEL----------GARALGFTNVYVKNLHMDMDEQGLQDLFSQ 276
Query: 329 FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
FG + S KVMRD +G SRG GFV F EEA +A+ MNGK V + LYV AQ++ +R+
Sbjct: 277 FGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQ 336
Query: 389 ARLQ 392
+ L+
Sbjct: 337 SELK 340
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 119/210 (56%), Gaps = 23/210 (10%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A G T++YV +L ++ + L DLF+Q G++ SV+V RD S +S G+G+VNF +E
Sbjct: 248 ARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRD-SNGQSRGFGFVNFEKHEE 306
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKS------------GAGNIFIKNLDK 121
A +A++ +N + G+ + V + R L++ N+++KNLD
Sbjct: 307 AQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKNLDD 366
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+I+ + L + FSA+G I S KV T+ + SKG+GFV F + E A KA+ ++NG ++ K
Sbjct: 367 SINDERLKEVFSAYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 425
Query: 182 VYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
+YV RK+ER K+ TN Y + LS
Sbjct: 426 LYVALAQRKEER-----KAILTNQYRRQLS 450
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/418 (51%), Positives = 296/418 (70%), Gaps = 45/418 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ Q+ +AL
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGEKAL 122
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 123 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 182
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVG+ + K++R ++ K+
Sbjct: 183 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 242
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ TEE+ ++ F +YG +TS+ + RD +GKS+ FGFVNF AA+AV
Sbjct: 243 NFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAAKAV 302
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNGK+F +E YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D +DD+
Sbjct: 303 EELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDVDDD 362
Query: 321 KLKQLFSPFGSITSCKVMRD-----PSGI------------------------------- 344
KL+Q+FS FG ITS KVMRD P+G
Sbjct: 363 KLRQMFSEFGPITSAKVMRDAPPEPPAGSEGDKEGKDKENKKESEKEGEGEAAEKKTEKK 422
Query: 345 -------SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
S+G GFV FS P++A++A+ EMN +MV KPLYVALAQRK+ R+++L+ +
Sbjct: 423 VERKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVDGKPLYVALAQRKDVRKSQLEASI 480
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/376 (56%), Positives = 290/376 (77%), Gaps = 2/376 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RALE
Sbjct: 44 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 103
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN+LSCKV
Sbjct: 104 QLNYSSIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKV 163
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSK 201
ATD +G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVG+ + ++ER +++ K++
Sbjct: 164 ATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMKAQ 223
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKN TEE+ F ++G++TSAV+ RD +G+S+ FGFVNFE D+A +AVE
Sbjct: 224 FTNIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVE 283
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+ F K+ +V +AQKK+ERE EL+ +EQ E KFQG NLYIKNL+D +DD++
Sbjct: 284 GLHDLDFKGKKLFVSRAQKKAEREQELRQSYEQAKMEKMSKFQGVNLYIKNLEDDLDDDR 343
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ F PFGSITS KVMRD G S+G GFV FS+P+EA++A+ EMN KM+ +KPLYV+LA
Sbjct: 344 LRTEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLA 403
Query: 382 QRKEDRRARLQVCLLQ 397
QR++ RR +L+ + Q
Sbjct: 404 QRRDVRRQQLESQIAQ 419
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
++F +LY+ +LE ++ D +L F G + S +V RD S G+G+V FS+ EA
Sbjct: 323 SKFQGVNLYIKNLEDDLDDDRLRTEFEPFGSITSAKVMRD-EKGTSKGFGFVCFSSPDEA 381
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 382 TKAVAEMNNKMIGTKPLYVSLAQR 405
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/378 (55%), Positives = 285/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+A +AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ A ++QG NLY+KNL
Sbjct: 242 EEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 167/295 (56%), Gaps = 25/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +LE ++ + LYD F+ G ++S +V C D +R G+G+V+F + A +
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR---GFGFVHFETHEAAHQ 153
Query: 81 ALEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSA 134
A+ +N LN + + V + R+ L R NI++KNL +D + L D FS
Sbjct: 154 AIATMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQ 213
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +LS KV D G S+G+GFV F+ E AQKA+ +NG ++ + +YVG ++ ER
Sbjct: 214 FGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQ 273
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K +F N+YVKNL +S +E L+K F YG ITSA VM +G G
Sbjct: 274 NEL-KRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GH 331
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 163/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGQPVRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G SRG GFV F EEA +A+++MNGK V + LYV AQ++ +R+ L+
Sbjct: 226 DIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELK 277
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/384 (54%), Positives = 289/384 (75%), Gaps = 9/384 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N G G + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y
Sbjct: 2 NATGAG-----YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD++ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D +G S+GYGFV F+ +E+A +AI+ +NGMLLND++V+VGHF
Sbjct: 117 DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN E ++ L++ F +G S VM D G+S+ FGF
Sbjct: 176 RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VN+ N ++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG N
Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDD++L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARL 391
G++V +KPLYVALAQRKE+R+A L
Sbjct: 355 GRIVSTKPLYVALAQRKEERKAIL 378
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 172/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D R GYG+V+F + A RA
Sbjct: 97 GVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETQEAANRA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSA 134
++ +N LN + + V + S R+ L + GA N++IKN + +D K L + FSA
Sbjct: 155 IQTMNGMLLNDRKVFVGHFKSRREREL-EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSA 213
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FGN LS KV D G+S+G+GFV + N E AQKA+ ++NG +N + +YVG ++ ER
Sbjct: 214 FGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQ 273
Query: 195 TE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E IN+ + N+YVKNL + ++ L+K F YGTITSA VM +G G S
Sbjct: 274 GELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 166/292 (56%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ +GAG ++++ +L + L++ FS G I+S +V D+ +S GY ++ F
Sbjct: 1 MNATGAGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS NV++KNL ES + L
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDESIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ +GFV+FE + A RA++ +NG +D++ +VG +
Sbjct: 117 DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERELE A + N+YIKN + +DD++L+++FS FG+ S KVM D
Sbjct: 176 RRERELEY----------GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G SRG GFV + EEA +A+ EMNGK V + +YV AQ++ +R+ L+
Sbjct: 226 DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELK 277
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/378 (55%), Positives = 285/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+A +AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ A ++QG NLY+KNL
Sbjct: 242 EEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 167/295 (56%), Gaps = 25/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +LE ++ + LYD F+ G ++S +V C D +R G+G+V+F + A +
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR---GFGFVHFETHEAAHQ 153
Query: 81 ALEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSA 134
A+ +N LN + + V + R+ L R NI++KNL +D + L D FS
Sbjct: 154 AIATMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQ 213
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +LS KV D G S+G+GFV F+ E AQKA+ +NG ++ + +YVG ++ ER
Sbjct: 214 FGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQ 273
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K +F N+YVKNL +S +E L+K F YG ITSA VM +G G
Sbjct: 274 NEL-KRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GH 331
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 163/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGQPVRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G SRG GFV F EEA +A+++MNGK V + LYV AQ++ +R+ L+
Sbjct: 226 DIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELK 277
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/384 (54%), Positives = 287/384 (74%), Gaps = 12/384 (3%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ N + RALE L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNVTDGERALEQL 105
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK----------ALHDTFSAF 135
N++ + G+ R+M+S RDP+LRK+G GNIFIKNLD+ ID+K ALHDTF+AF
Sbjct: 106 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDELIDNKVRTAQKTPPHALHDTFAAF 165
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GN+LSCKVATD G+S+GYG+V ++ E+A+ AI+ +NGMLLNDK+VYVG+ + ++ER +
Sbjct: 166 GNVLSCKVATDEQGRSRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYVGYHISRKERQS 225
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
++ ++ FTN+YVKNL T++ + F ++G +TSAV+ D +GKSK FGFVNFEN
Sbjct: 226 KLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKSKGFGFVNFENH 285
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ AA+AV+ L+ F+ K+ +V +AQKK+ERE EL+ +E E K+QG NLYIKNL
Sbjct: 286 EQAAKAVDTLHDTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQGVNLYIKNL 345
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
+D +DDEKL+ F PFG+ITSCKVMRD G S+G GFV FS+P+EA++A+ EMN KM+ S
Sbjct: 346 EDDVDDEKLRAEFEPFGTITSCKVMRDDKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGS 405
Query: 374 KPLYVALAQRKEDRRARLQVCLLQ 397
KPLYV+LAQR+E RR +L+ + Q
Sbjct: 406 KPLYVSLAQRREVRRQQLESQIAQ 429
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+++ +LY+ +LE +V D +L F G + S +V RD S G+G+V FS+ EA
Sbjct: 333 SKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRD-DKGTSKGFGFVCFSSPDEA 391
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 392 TKAVAEMNNKMIGSKPLYVSLAQR 415
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 286/371 (77%), Gaps = 2/371 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVG+L+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++ + A+
Sbjct: 42 TASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAI 101
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDPS+RK G+GNIFIKNL ID+K L++TFS FGNILSCK
Sbjct: 102 EKLNYTAIKGRPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFGNILSCK 161
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK- 201
+A D G+SKG+GFV F+NEE+A++AI+ +NGMLLN ++VYV + K++R +++++++
Sbjct: 162 IANDETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYVAPHVSKKDRQSKLDEARA 221
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKNL TEED + F YGTITS + +D +GKS+ FGFV+FEN +DA +AV
Sbjct: 222 NFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAV 281
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
EALN ++ + YVG+AQKK ER ELK Q++ + E K+QG NL+IKNLDDSIDDE
Sbjct: 282 EALNDTEYKGQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDE 341
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK+ F+PFG+ITS +VMR +G S+G GFV FSTPEEA+RA+ E N ++V KPLYVA+
Sbjct: 342 KLKEEFAPFGTITSARVMRTENGKSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAI 401
Query: 381 AQRKEDRRARL 391
AQRK+ RR++L
Sbjct: 402 AQRKDVRRSQL 412
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 158/290 (54%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L ++ + LY+ F+ G ++S ++ D T +S G+G+V+F N + A A
Sbjct: 129 GSGNIFIKNLHPDIDNKTLYETFSVFGNILSCKIAND-ETGKSKGFGFVHFENEEAAREA 187
Query: 82 LEMLNFTPLNGKPI----RVMYSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNG+ + V R L ++ A N+++KNLD + + F +
Sbjct: 188 IDAINGMLLNGQEVYVAPHVSKKDRQSKLDEARANFTNVYVKNLDLEATEEDFENLFKPY 247
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + D G+S+G+GFV F+N E A KA+E LN + +YVG +K ER
Sbjct: 248 GTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQTLYVGRAQKKYERLQ 307
Query: 196 EINK----SKF--------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K SK N+++KNL +S +E L++ F +GTITSA VMR +GKSK
Sbjct: 308 ELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRTENGKSK 367
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A RA+ N + K YV AQ+K R +L Q +
Sbjct: 368 GFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 417
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 150/282 (53%), Gaps = 15/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ LD ++ L+D FS G++ S +V D + S GY +V F++ E+ + AIE
Sbjct: 43 ASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIE 102
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
KLN + + + +RD + K N+++KNL + L ++F +G I
Sbjct: 103 KLNYTAIKGRPCRIMW----SQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFGNIL 158
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S + D GKSK FGFV+FEN + A A++A+NG + +E YV K +R+ +L
Sbjct: 159 SCKIANDETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYVAPHVSKKDRQSKLD- 217
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
EA F N+Y+KNLD +E + LF P+G+ITS + +D G SRG GF
Sbjct: 218 -------EARANF--TNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGF 268
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V F E+A +A+ +N + LYV AQ+K +R L+
Sbjct: 269 VDFENHEDAVKAVEALNDTEYKGQTLYVGRAQKKYERLQELK 310
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L++ +L+ ++ D +L + F G + S RV R +S G+G+V FS +EA RA+
Sbjct: 328 NLFIKNLDDSIDDEKLKEEFAPFGTITSARVMR-TENGKSKGFGFVCFSTPEEATRAITE 386
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 387 KNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 420
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/384 (54%), Positives = 287/384 (74%), Gaps = 9/384 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N +G G + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+++RRSLGY Y
Sbjct: 2 NASGPG-----YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+P+R+M+S RDP LRKSG GN+FIKNLD +ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D NG S+G+GFV F+ +E+A +AI+ +NGMLLND++V+VGHF
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN + + L++ F +G S VM D G+SK FGF
Sbjct: 176 RKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VNFE ++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E ++QG N
Sbjct: 236 VNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDDE+L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARL 391
G++V +KPLYVALAQRKE+R+A L
Sbjct: 355 GRIVSTKPLYVALAQRKEERKAIL 378
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 166/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + R G+G+V+F + A RA
Sbjct: 97 GVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSR--GHGFVHFETQEAATRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN + + V + R + GA N++IKN +D L + FS F
Sbjct: 155 IQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D G+SKG+GFV F+ E AQKA+ +NG +N + VYVG ++ ER +
Sbjct: 215 GKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQS 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F YGTITSA VM +G G S
Sbjct: 275 EL-KRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 164/292 (56%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G ILS +V D+ + +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + V + +RD + KS NV++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGRPVRI----MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D +G S+ GFV+FE + A RA++ +NG +D++ +VG +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE E A + N+YIKN D +DD +L+++FS FG S KVM D
Sbjct: 176 RKEREAEF----------GARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G S+G GFV F EEA +A+ +MNGK + + +YV AQ++ +R++ L+
Sbjct: 226 HTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELK 277
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/378 (55%), Positives = 284/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NG++ + YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 166/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHEAAQNA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSL----RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + S R+ + R NI++KNL +D + L D FS F
Sbjct: 155 ISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D +G S+G+GFV F+ E AQKA+ +NG ++ + +YVG ++ ER
Sbjct: 215 GKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQN 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K +F N+YVKNL +S +E L+K F YG ITSA VM +G G S
Sbjct: 275 EL-KRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 164/292 (56%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE+EL A + N+Y+KNL +D+++L+ LFS FG + S KVMRD
Sbjct: 176 RREREVEL----------GARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SRG GFV F EEA +A++ MNG+ V + LYV AQ++ +R+ L+
Sbjct: 226 DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELK 277
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 213/388 (54%), Positives = 291/388 (75%), Gaps = 7/388 (1%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GGG + SLYVGDL+ ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 GGGPT---YPCASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNF 60
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++DTF
Sbjct: 61 QQPADAERALDTMNFDTIKGKPMRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTF 120
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
SAFGNILSCKVA D G SKG+GFV F+ +E+A +A+ K+NGM+LN K+VYVG F+ + E
Sbjct: 121 SAFGNILSCKVAQDETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKVYVGRFVPRSE 180
Query: 193 RDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250
R + ++ +FTN+YVKN + ++ L+ F +YG + SA VM D G S+ FGFV++
Sbjct: 181 RLAAMGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSY 240
Query: 251 ENSDDAARAVEALNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
E D A +A E +N + DD + YVG+AQKK+ER+ ELK +FE+ +E ++QG NLY
Sbjct: 241 EEPDSAGKACEEMNDMEVDDGRRIYVGRAQKKAERQAELKAKFEKIKQERIQRYQGVNLY 300
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLD +ID+E L++ FS FG+ITS KVM + +G S+G GFV FS+PEEA++A+ EMNG+
Sbjct: 301 VKNLDSTIDEEILRKEFSQFGTITSSKVMTE-NGRSKGFGFVCFSSPEEATKAVTEMNGR 359
Query: 370 MVVSKPLYVALAQRKEDRRARLQVCLLQ 397
+VVSKPLYVALAQRKEDR+A+L +Q
Sbjct: 360 IVVSKPLYVALAQRKEDRKAQLASQYMQ 387
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 183/331 (55%), Gaps = 30/331 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S +V +D T S G+G+V+F + A A
Sbjct: 98 GVGNVFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQD-ETGSSKGFGFVHFETQEAADEA 156
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+ +N LNGK + V + R L G NI++KN D L D F +
Sbjct: 157 MAKVNGMMLNGKKVYVGRFVPRSERLAAMGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKY 216
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G ++S KV TD G S+G+GFV ++ +SA KA E++N M ++D +++YVG +K ER
Sbjct: 217 GKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGKACEEMNDMEVDDGRRIYVGRAQKKAERQ 276
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K+KF N+YVKNL + EE L+K F ++GTITS+ VM + +G+
Sbjct: 277 AEL-KAKFEKIKQERIQRYQGVNLYVKNLDSTIDEEILRKEFSQFGTITSSKVMTE-NGR 334
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM----- 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K +R+ +L Q+ Q M
Sbjct: 335 SKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRKEDRKAQLASQYMQRMAGMRM 394
Query: 297 --KEAADKFQGANLYIKNLDDSIDDEKLKQL 325
+ FQG++ ++ ++ ++ Q+
Sbjct: 395 PAPQPNQMFQGSSYFMPSMQPRYFPSQMAQV 425
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/378 (55%), Positives = 284/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ F SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F +G + S VMRD G S+ FGFVNF+
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRILGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 169/295 (57%), Gaps = 25/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +LE ++ + LYD F+ G ++S +V C D +R G+G+V+F + A +
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR---GFGFVHFETHEAAQQ 153
Query: 81 ALEMLNFTPLNGKPIRVMY--SHRDPSL----RKSGAGNIFIKNLDKAIDHKALHDTFSA 134
A+ +N LN + + V + S R+ + R NI++KNL +D + L D FS
Sbjct: 154 AITTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSR 213
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +LS KV D +G S+G+GFV F E AQKA+ +NG ++ + +YVG ++ ER
Sbjct: 214 FGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQ 273
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+E+ K +F N+YVKNL +S +E L+K F YG ITSA VM +G G
Sbjct: 274 SEL-KRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GH 331
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 166/292 (56%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGPGFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE+EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREVEL----------GARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SRG GFV F EEA +A+++MNGK V + LYV AQ++ +R++ L+
Sbjct: 226 DSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELK 277
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/378 (55%), Positives = 284/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NG++ + YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 166/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHEAAQNA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSL----RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + S R+ + R NI++KNL +D + L D FS F
Sbjct: 155 ISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D +G S+G+GFV F+ E AQKA+ +NG ++ + +YVG ++ ER
Sbjct: 215 GKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQN 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K +F N+YVKNL +S +E L+K F YG ITSA VM +G G S
Sbjct: 275 EL-KRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 163/289 (56%), Gaps = 20/289 (6%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 4 SGPGYPLASLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V+ D G S+ FGFV+FE + A A+ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRRE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE+EL A + N+Y+KNL +D+++L+ LFS FG + S KVMRD SG
Sbjct: 179 REVEL----------GARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SRG GFV F EEA +A++ MNG+ V + LYV AQ++ +R+ L+
Sbjct: 229 HSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELK 277
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/373 (56%), Positives = 282/373 (75%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TR S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AIEK+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAYL 378
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 132/371 (35%), Positives = 196/371 (52%), Gaps = 35/371 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S V D + S GYG+V+F + A RA
Sbjct: 97 GMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNG+ + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E L+K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM------- 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVP 393
Query: 297 ---KEAADKFQGANLYIKNLDDSIDDEKLKQL-FSPFGSITSCK---VMRDPSGISRGSG 349
+ F A +N ++ QL SP + + PS I G+
Sbjct: 394 NQRAPPSGYFMTAVPQTQNHAAYYPPSQIAQLRPSPRWTAQGARPHPFQNKPSAIRPGAP 453
Query: 350 FVAFSTPEEAS 360
V FST AS
Sbjct: 454 RVPFSTMRPAS 464
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 166/298 (55%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K + + +RD + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRIMW----SQRDPSLRKSGMGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ Q +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+RGS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P++A AL MN ++ KPL + +QR R
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPLRIMWSQRDPSLR 94
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/373 (55%), Positives = 283/373 (75%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY F+ G ++S+RVCRD+ TRRSLGY Y+NF +A
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAEC 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +N+ + G+PIR+M+S RDP LRKSG GNIFIKN+D++ID+KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKV D G SKGYGFV F+ EE+A +AIE +NGMLLND++V+VGHF ++ER+ E+
Sbjct: 128 CKVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKSRKEREEELGSK 186
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
KFTN+Y+KN E +E L++ F +G S VM+D G+S+ FGFVNF + +DA +
Sbjct: 187 ALKFTNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K YVG+AQK+ ER+ ELK +FE ++ ++QG NLY+KNLDDSID
Sbjct: 247 AVDEMNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDSID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ F+P+G+ITS KVM D SRG GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKEFAPYGTITSAKVMTD-GPQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQR+E+R+A L
Sbjct: 366 ALAQRREERKAIL 378
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 176/315 (55%), Gaps = 30/315 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +++ ++ + LYD F+ G ++S +V D R S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCD--ERGSKGYGFVHFETEEAANRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + G+ NI+IKN + + + L + F+AF
Sbjct: 155 IETMNGMLLNDRKVFVGHFKSRKEREEELGSKALKFTNIYIKNFGEDYNDEKLKEVFAAF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS +V D G+S+G+GFV F + E AQKA++++NG LN K +YVG ++ ER
Sbjct: 215 GRTLSVRVMKDERGRSRGFGFVNFAHHEDAQKAVDEMNGKELNGKVIYVGRAQKRLERQG 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL +S +E L+K F YGTITSA VM DG +S
Sbjct: 275 EL-KRKFELIKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGP-QS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM------ 296
+ FGFV F + ++A +AV +NG+ K YV AQ++ ER+ L +++ Q +
Sbjct: 333 RGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQRLATLRTM 392
Query: 297 -KEAADKFQGANLYI 310
D +Q A Y+
Sbjct: 393 TSPIIDSYQQAGYYM 407
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 160/282 (56%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L+ FS G I+S +V D+ +S GY ++ F A+ A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ + + + +RD + KS N+++KN+ ES + L +F +G I
Sbjct: 71 TMNYDVIKGRPIRIMW----SQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D G SK +GFV+FE + A RA+E +NG +D++ +VG + + ERE EL
Sbjct: 127 SCKVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKSRKEREEELGS 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A KF N+YIKN + +DEKLK++F+ FG S +VM+D G SRG GF
Sbjct: 186 K--------ALKF--TNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V F+ E+A +A+ EMNGK + K +YV AQ++ +R+ L+
Sbjct: 236 VNFAHHEDAQKAVDEMNGKELNGKVIYVGRAQKRLERQGELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M + + A+LY+ +L + + L Q FSP G I S +V RD I+R G ++
Sbjct: 1 MNSSGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRD--IITRRSLGYAYIN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F P +A AL MN ++ +P+ + +QR
Sbjct: 59 FQQPADAECALDTMNYDVIKGRPIRIMWSQR 89
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/427 (51%), Positives = 293/427 (68%), Gaps = 48/427 (11%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N NQ + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 43 NPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 102
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 103 DGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG 162
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 163 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 222
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVYVKN+ T+E+ ++ FG++G ITSA + RD GKS+ FGFVN+ + +
Sbjct: 223 FEEMKANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHE 282
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
+A AV+ LN K F ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 283 NAQTAVDDLNDKDFHGQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLT 342
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGI------------------------------ 344
D +DDEKL++LFS FG+ITS KVMRD G
Sbjct: 343 DDVDDEKLRELFSAFGTITSAKVMRDTVGAGSDSEKEETKESSEEVEEPKEEETNAKTED 402
Query: 345 ----------------SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ R+
Sbjct: 403 EDKTDAKKSDKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRK 462
Query: 389 ARLQVCL 395
++L+ +
Sbjct: 463 SQLEASI 469
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 156/293 (53%), Gaps = 21/293 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L + FS+ G + S +V D + +S GY +V ++N
Sbjct: 42 PNPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 101
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ + + +RD + K+ NV++KNL + + L +
Sbjct: 102 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 157
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K
Sbjct: 158 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 217
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+Y+KN+D + DE+ ++LF FG ITS + R
Sbjct: 218 DRQSKFEEMKANF-------------TNVYVKNIDPEVTDEEFRELFGKFGDITSATISR 264
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
D SG SRG GFV + E A A+ ++N K + LYV AQ+K +R L+
Sbjct: 265 DDSGKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYVGRAQKKHEREEELR 317
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/373 (56%), Positives = 285/373 (76%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F++ G ++S+RVCRD+ TRRS Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGN+LS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F E+A++AIEK+NG+ LND +V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFVGRFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD+ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDAID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V ++PLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATEPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAYL 378
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 172/291 (59%), Gaps = 21/291 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G V+S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNVLSCKVVCDENG--SKGYGFVHFGTREAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N PLN + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGIPLNDCKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL ++ +E L+K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRKFEQMKQDRITRYQVVNLYVKNLDDAIDDERLRKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
FGFV F + ++A +AV +NG+ + YV AQ+K ER+ L +++ Q
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATEPLYVALAQRKEERQAYLTNEYMQ 384
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 163/291 (56%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K + + +RD + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G + S V+ D +G SK +GFV+F + A RA+E +NG +D + +VG+ + +
Sbjct: 118 TVSAFGNVLSCKVVCDENG-SKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQ 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/378 (55%), Positives = 284/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G+S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y +AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQDRLSRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD KL++ FSP+G ITS KVM + S S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDGKLRKEFSPYGVITSAKVMTEGSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 163/293 (55%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETYEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R + GA NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D +G+S+ +GFV F+ E AQKA+ +NG ++ + +Y ++ ER
Sbjct: 215 GKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQN 274
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ + S++ N+YVKNL +S + L+K F YG ITSA VM +G SK
Sbjct: 275 ELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGKLRKEFSPYGVITSAKVMTEGS-HSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRV 386
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 163/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G+ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDEHG-SRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ER EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RRERAAEL----------GARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SR GFV F EEA +A++ MNGK V + LY + AQ++ +R+ L+
Sbjct: 226 SSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELK 277
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/370 (59%), Positives = 282/370 (76%), Gaps = 3/370 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V +S L+D F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLDKAID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV FE ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ ++ + G NLY+KNLDD+IDD++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ FSP+G+ITS KVM D G S+G GFV F+ P EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRVAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAPSEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 363 QRKEERKAHL 372
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 159/283 (56%), Gaps = 16/283 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + ++ L D FS+ G +LS +V D + +S GY +V F A++A++
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N L+ +K + + +RD + +S NV++KNL ++ + + +F +G I
Sbjct: 62 TMNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 118 SCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GF
Sbjct: 177 -------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 351 VAFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQ 392
VAF T E A A+ +NGK M K LYVA AQ+K +R+ L+
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELK 270
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 161/295 (54%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV F+ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ ++ L+ +F YG ITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRVAFSPYGNITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F +A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFNAPSEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/373 (56%), Positives = 282/373 (75%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TR S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AIEK+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLQKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAYL 378
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 196/371 (52%), Gaps = 35/371 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S V D + S GYG+V+F + A RA
Sbjct: 97 GMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNG+ + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E LQK+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM------- 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVP 393
Query: 297 ---KEAADKFQGANLYIKNLDDSIDDEKLKQL-FSPFGSITSCK---VMRDPSGISRGSG 349
+ F A +N ++ QL SP + + PS I G+
Sbjct: 394 NQRAPPSGYFMTAVPQTQNHAAYYPPSQITQLRPSPRWTAQGARPHPFQNKPSAIRPGAP 453
Query: 350 FVAFSTPEEAS 360
V FST AS
Sbjct: 454 RVPFSTMRPAS 464
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 166/298 (55%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K + + +RD + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRIMW----SQRDPSLRKSGMGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ Q +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+RGS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P++A AL MN ++ KPL + +QR R
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPLRIMWSQRDPSLR 94
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/396 (54%), Positives = 292/396 (73%), Gaps = 6/396 (1%)
Query: 7 QGQNVNGGGANANQFGTT--SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
Q Q G A G T SLY+GDLE +VT++ L+++FN +G V S+RVCRD TRRS
Sbjct: 46 QQQTAFTGAAAPIMTGATPASLYIGDLEPSVTEAMLFEVFNMVGPVASIRVCRDAVTRRS 105
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
LGYGY+N+ + +A RAL+ LN+T + G P+R+M+S+RDP+LR++G GNIFIKNL ID
Sbjct: 106 LGYGYINYLDIADAERALDTLNYTTVRGNPVRIMWSNRDPALRRAGTGNIFIKNLHTTID 165
Query: 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
HKALHDTFSAFG ILSCK+A D +S G+GFV ++ E A+ AI+ +NGMLLND+QVYV
Sbjct: 166 HKALHDTFSAFGKILSCKIAMD-GERSLGHGFVHYETMEMAENAIKHVNGMLLNDQQVYV 224
Query: 185 GHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
G + K+ER + I +SKFTN+YVKN+ S ++ ++ F +GT S V+M D +G S
Sbjct: 225 GLHISKKERSSTIEEKRSKFTNIYVKNIDASVDQKAFEEMFHPFGTTVSCVLMVDEEGNS 284
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFVN+EN +DA RAVE ++ K+ K+ YVG+AQKK ERE EL+ Q+E+ +E K
Sbjct: 285 KEFGFVNYENHEDARRAVEEMHEKEIGGKQIYVGRAQKKFEREEELRRQYEKIREEKLSK 344
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASR 361
+QG NL++KN+D+SIDDEKL+Q FS FG+ITS K+M D +GIS+G GFV FS P+EA++
Sbjct: 345 YQGVNLFVKNIDESIDDEKLRQEFSVFGAITSTKIMVDEKTGISKGFGFVCFSNPDEATK 404
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
A+ EMN +M+ +KP+YVALAQRKE RR +L + Q
Sbjct: 405 AVTEMNNRMLANKPIYVALAQRKEVRRQQLAAQMQQ 440
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 173/312 (55%), Gaps = 26/312 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
GT ++++ +L + L+D F+ G+++S ++ D RSLG+G+V++ + A A
Sbjct: 151 GTGNIFIKNLHTTIDHKALHDTFSAFGKILSCKIAMD--GERSLGHGFVHYETMEMAENA 208
Query: 82 LEMLNFTPLNGKPI----RVMYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN + + + R ++ ++S NI++KN+D ++D KA + F F
Sbjct: 209 IKHVNGMLLNDQQVYVGLHISKKERSSTIEEKRSKFTNIYVKNIDASVDQKAFEEMFHPF 268
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +SC + D G SK +GFV ++N E A++A+E+++ + KQ+YVG +K ER+
Sbjct: 269 GTTVSCVLMVDEEGNSKEFGFVNYENHEDARRAVEEMHEKEIGGKQIYVGRAQKKFEREE 328
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKS 242
E+ + SK+ N++VKN+ ES +E L++ F +G ITS +M D G S
Sbjct: 329 ELRRQYEKIREEKLSKYQGVNLFVKNIDESIDDEKLRQEFSVFGAITSTKIMVDEKTGIS 388
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F N D+A +AV +N + +K YV AQ+K R +L Q +Q A +
Sbjct: 389 KGFGFVCFSNPDEATKAVTEMNNRMLANKPIYVALAQRKEVRRQQLAAQMQQRAMRAHQQ 448
Query: 303 -----FQGANLY 309
+ GA+++
Sbjct: 449 MMPPGYPGASIF 460
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/373 (56%), Positives = 282/373 (75%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TR S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AIEK+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLQKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAYL 378
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 196/371 (52%), Gaps = 35/371 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S V D + S GYG+V+F + A RA
Sbjct: 97 GMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNG+ + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E LQK+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM------- 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVP 393
Query: 297 ---KEAADKFQGANLYIKNLDDSIDDEKLKQL-FSPFGSITSCK---VMRDPSGISRGSG 349
+ F A +N ++ QL SP + + PS I G+
Sbjct: 394 NQRAPPSGYFMTAVPQTQNHAAYYPPSQITQLRPSPRWTAQGARPHPFQNKPSAIRPGAP 453
Query: 350 FVAFSTPEEAS 360
V FST AS
Sbjct: 454 RVPFSTMRPAS 464
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 166/298 (55%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K + + +RD + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRIMW----SQRDPSLRKSGMGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ Q +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+RGS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P++A AL MN ++ KPL + +QR R
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPLRIMWSQRDPSLR 94
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/376 (57%), Positives = 283/376 (75%), Gaps = 1/376 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALE 83
SLYVGDLEA+V + QL LF+Q+ V S VCRD++ +SLGYGYVNF + ++A RA+E
Sbjct: 62 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGSKSLGYGYVNFMSREDATRAME 121
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNFT +NGKPIRVM+S+RDP+LRKSG N+FIKNL+ ID+K+L++ FS+FG ILS KV
Sbjct: 122 NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 181
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
ATD NG+SKGYGF+QF++E SA+ AI LNGML N ++++VG F+R+QER+ + + FT
Sbjct: 182 ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT 241
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL + ++ DL F +G ITSA+VMRD +G S+CFGFVNFE S+ A AV+ L
Sbjct: 242 NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL 301
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NGK D YV +AQKKSER+ ELK +FE + + +K Q NLY+KNLDD I+DE L+
Sbjct: 302 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 361
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+LF FG + SCKVM D G S+G GFV+F+T E+A+ A+L+MNGKMV KPLYVA+AQR
Sbjct: 362 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 421
Query: 384 KEDRRARLQVCLLQCR 399
KE+R+A L + R
Sbjct: 422 KEERKAFLAAHFARVR 437
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 151/288 (52%), Gaps = 19/288 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE N+ + LY++F+ G ++S +V D + + S GYG++ F + A A
Sbjct: 148 GLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGK-SKGYGFIQFESESSAKDA 206
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN----IFIKNLDKAIDHKALHDTFSAFGN 137
+ LN NG+ I V R +G N +++KNL K L + FS+FG
Sbjct: 207 INGLNGMLANGQKIFVGLFIRRQEREHTGDANNFTNVYVKNLPKHFSDNDLLNEFSSFGA 266
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
I S V D NG S+ +GFV F+ E A+ A++ LNG + D +YV +K ER E+
Sbjct: 267 ITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAEL 326
Query: 198 NKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
K+KF N+Y+KNL + +E L+K F +G + S VM D G+SK
Sbjct: 327 -KAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKG 385
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
GFV+F +DA A+ +NGK K YV AQ+K ER+ L F
Sbjct: 386 CGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHF 433
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/383 (56%), Positives = 284/383 (74%), Gaps = 14/383 (3%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY+ F+ G ++S+RV RD +TRRSLGY VNF ++A R
Sbjct: 8 YSLASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLD++ID KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-- 198
CKV D NG SKGYGFV F+ +E A++AIEK+NGM LND++V+VG F +++R E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVY+KNL E +E LQ F ++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFTNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQF----------EQNMKEAADKFQGANL 308
AV+ +NGK + K+ YVG+AQKK ER+ ELKH+F EQ ++ + + QG NL
Sbjct: 247 AVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQGVNL 306
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y+KNLDD IDDE+L++ FSPFG+ITS KV + G S+G GFV FS+PEEA++A+ EMNG
Sbjct: 307 YVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNG 365
Query: 369 KMVVSKPLYVALAQRKEDRRARL 391
++V +KPLYVALAQRKE+R+A L
Sbjct: 366 RIVATKPLYVALAQRKEERQAHL 388
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 175/307 (57%), Gaps = 39/307 (12%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ LYD F+ G ++S +V D + S GYG+V+F +EA RA
Sbjct: 97 GVGNIFVKNLDRSIDSKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERA 154
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+E +N LN + + V S RD R++ G N++IKNL + +D + L F
Sbjct: 155 IEKMNGMFLNDRKVFVGRFKSRRD---RQAELGARAKEFTNVYIKNLGEDMDDERLQGLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG LS KV TD +G+SKG+GFV F+ E A+KA++++NG LN KQ+YVG +K E
Sbjct: 212 SKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVE 271
Query: 193 RDTEINKSKF-----------------------TNVYVKNLSESTTEEDLQKSFGEYGTI 229
R TE+ K KF N+YVKNL + +E L+K F +GTI
Sbjct: 272 RQTEL-KHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTI 330
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
TSA V +G G+SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L
Sbjct: 331 TSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLS 389
Query: 290 HQFEQNM 296
+Q+ Q M
Sbjct: 390 NQYMQRM 396
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 168/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS+ G ILS +V D +S GY V F
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
E A++A++ +N ++ K V + +RD + KS N++VKNL S + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE ++A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
+R+ EL + A +F N+YIKNL + +DDE+L+ LFS FG S KVM D
Sbjct: 177 RDRQAELGAR--------AKEF--TNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELK 277
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/388 (56%), Positives = 286/388 (73%), Gaps = 24/388 (6%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K++
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKL-------- 169
Query: 191 QERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250
FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV F
Sbjct: 170 -----------FTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAF 218
Query: 251 ENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
E+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG NLY
Sbjct: 219 EDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLY 278
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMNG+
Sbjct: 279 VKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGR 337
Query: 370 MVVSKPLYVALAQRKEDRRARLQVCLLQ 397
++V+KPLYVALAQRKEDR+A L +Q
Sbjct: 338 IIVTKPLYVALAQRKEDRKAHLASQYMQ 365
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 176/323 (54%), Gaps = 48/323 (14%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
++ +N LNGK + N+++KN + + L + F +G I S
Sbjct: 156 IDRVNGMLLNGKKLFT---------------NVYVKNFGEDMTDDKLKEMFEKYGTITSH 200
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEI--- 197
KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER E+
Sbjct: 201 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 260
Query: 198 ---------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+SK FGFV
Sbjct: 261 FEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFV 319
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q + AN+
Sbjct: 320 CFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL---------ANM 370
Query: 309 YIKNLDDSIDDEKLKQLFSPFGS 331
+ +++ Q+F P G+
Sbjct: 371 RM---------QQMGQIFQPGGA 384
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/373 (55%), Positives = 285/373 (76%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F++ G ++S+RVCRD+ T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGN+LS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ E+A++AIEK+NG+ LND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD+ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITRYQVVNLYVKNLDDAID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAYL 378
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 173/291 (59%), Gaps = 21/291 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G V+S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNVLSCKVVCDENG--SKGYGFVHFETREAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N PLN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGIPLNDRKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL ++ +E L+K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKCKFEQMKQDRITRYQVVNLYVKNLDDAIDDERLRKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQ 384
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 166/298 (55%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K + + +RD + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G + S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNVLSCKVVCDENG-SKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQ 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ Q +
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKCKFEQMK 284
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/380 (56%), Positives = 288/380 (75%), Gaps = 5/380 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A R
Sbjct: 8 YPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK- 199
CK+A+D NG SKGYGFV F+ EE+A++AIEK+NGMLLN K+VYVG F+ ++ER +
Sbjct: 128 CKIASDENG-SKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYVGKFIPRKERIALLGDK 186
Query: 200 -SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN + ++ +++ F +G I SA VM D GKS+ FGFV++E + A +
Sbjct: 187 MKRFNNVYIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEK 246
Query: 259 AVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
AV+ LNG + K Y G+AQKK+ER+ ELK +FE+ E +++QG NLY+KNLDD +
Sbjct: 247 AVDNLNGMELGGGKVLYAGRAQKKAERQAELKDKFEKIKMERINRYQGVNLYVKNLDDVV 306
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ FS FG+ITS +VM + G S+G GFV FS+PEEA++A+ EMNG+++VSKPLY
Sbjct: 307 DDERLRKEFSQFGTITSARVMSE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIIVSKPLY 365
Query: 378 VALAQRKEDRRARLQVCLLQ 397
VALAQRKEDRRA L +Q
Sbjct: 366 VALAQRKEDRRAHLASQYMQ 385
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 167/294 (56%), Gaps = 22/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S ++ D + S GYG+V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIASDENG--SKGYGFVHFETEEAARQA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R + G N++IKN +D + + F F
Sbjct: 155 IEKVNGMLLNGKKVYVGKFIPRKERIALLGDKMKRFNNVYIKNFGDELDDDKIRELFDPF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV-YVGHFLRKQERD 194
G I+S KV TD G+S+G+GFV ++ E+A+KA++ LNGM L +V Y G +K ER
Sbjct: 215 GKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNLNGMELGGGKVLYAGRAQKKAERQ 274
Query: 195 TE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E IN+ + N+YVKNL + +E L+K F ++GTITSA VM +G G+S
Sbjct: 275 AELKDKFEKIKMERINRYQGVNLYVKNLDDVVDDERLRKEFSQFGTITSARVMSEG-GRS 333
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K +R L Q+ Q M
Sbjct: 334 KGFGFVCFSSPEEATKAVTEMNGRIIVSKPLYVALAQRKEDRRAHLASQYMQRM 387
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N++ +LYV +L+ V D +L F+Q G + S RV + RS G+G+V FS+ +EA
Sbjct: 290 NRYQGVNLYVKNLDDVVDDERLRKEFSQFGTITSARVMSEGG--RSKGFGFVCFSSPEEA 347
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 348 TKAVTEMNGRIIVSKPLYVALAQR 371
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/399 (54%), Positives = 300/399 (75%), Gaps = 5/399 (1%)
Query: 2 AQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST 61
A V+ QG + + + + SLYVG+L+ +VT++ L+++FN +G V S+RVCRD T
Sbjct: 8 ATVETQGSSTSA--PESAPLASASLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVT 65
Query: 62 RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDK 121
RRSLGY YVNF +A RALE LN++ + G+ R+M+S RDPSLRK GNIFIKNLD
Sbjct: 66 RRSLGYAYVNFHRMADAERALETLNYSMIKGRSCRIMWSQRDPSLRKGNNGNIFIKNLDP 125
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+IDHKALHDTFSAFGNILSCK+A D G SKGYGFV ++ E+A+ AI+ +NGMLLND++
Sbjct: 126 SIDHKALHDTFSAFGNILSCKIAHDEQGNSKGYGFVHYETLEAAESAIKSVNGMLLNDRK 185
Query: 182 VYVGHFLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
V+VGH + ++ER++++ +S+ FTN+YVKN+ T+E+L + FG+YGTITS V+ RD D
Sbjct: 186 VFVGHHISRKERESKLGESRVQFTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRDDD 245
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
G SK FGFVNFE DA AV+ L+ K F ++ YV +AQKK+ERE EL+ Q+E+ E
Sbjct: 246 GTSKGFGFVNFEKHQDAQNAVDDLHKKDFRGQDLYVSRAQKKNEREEELRRQYEEAKLEK 305
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEE 358
K+QG NLY+KNLDD +DD++L+ FS +G ITS K+MRD + ISRG GFV F++PE+
Sbjct: 306 MSKYQGVNLYVKNLDDDMDDDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPED 365
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
A+RA+ EMNG+++ SKP+YVA+AQRKE RR++L++ + Q
Sbjct: 366 ATRAVTEMNGRIIGSKPIYVAIAQRKEVRRSQLEIQMAQ 404
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/378 (55%), Positives = 286/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A + +SLYVGDL +VT++ LY+ F+ +G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 AGGQGYPLSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNL+ +ID KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFVGHFKSQREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNLS E+ LQ F +G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGAQALEFTNIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV+ +NGK+ ++ YVG+AQK++ER+ ELK +FEQ ++ +++G NLY+KNL
Sbjct: 242 EEAQKAVDHMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQLKQDRQTRYRGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSI DEKL+ +FSP+G ITS KVM + S+G GFV FS+PEEA++A+ EMNG +V +
Sbjct: 302 DDSISDEKLRTVFSPYGVITSAKVMTE-GDHSKGFGFVCFSSPEEATKAVTEMNGCIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 174/316 (55%), Gaps = 34/316 (10%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETNEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + S R+ R++ G NI++KNL +D + L D F
Sbjct: 155 IGTMNGMLLNDRKVFVGHFKSQRE---REAELGAQALEFTNIYVKNLSVDMDEQGLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
AFGN+LS KV D +G S+G+GFV F+ E AQKA++ +NG ++ +Q+YVG ++ E
Sbjct: 212 FAFGNMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRAE 271
Query: 193 RDTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
R E+ + + N+YVKNL +S ++E L+ F YG ITSA VM +GD
Sbjct: 272 RQNELKRRFEQLKQDRQTRYRGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTEGD- 330
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM---- 296
SK FGFV F + ++A +AV +NG K YV AQ+K ER+ L +Q+ + +
Sbjct: 331 HSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALAQRKEERKAILTNQYMKRLSTVQ 390
Query: 297 ---KEAADKFQGANLY 309
+ FQ N Y
Sbjct: 391 ALSRPVLGSFQQPNSY 406
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 159/281 (56%), Gaps = 16/281 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++TFS G ILS +V D+ +S GY ++ F A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G S+ FGFV+FE ++ A +A+ +NG +D++ +VG + + ERE EL
Sbjct: 128 CKVACDEHG-SRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFVGHFKSQREREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+Y+KNL +D++ L+ LF FG++ S KVMRD SG SRG GFV
Sbjct: 184 -------GAQALEFTNIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F EEA +A+ MNGK V + LYV AQ++ +R+ L+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRAERQNELK 277
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/381 (56%), Positives = 284/381 (74%), Gaps = 4/381 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+ G V+S+RVCRD TRRSLGY YVNF +A R
Sbjct: 15 YPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAER 74
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKPIR+M+S RDPS+R+SGAGNIFIKNLDK+ID+KA++DTFS FGNILS
Sbjct: 75 ALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILS 134
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D SKGYGFV F+ EESAQKAIEK+NGMLL K+VYVG F + R E+ ++
Sbjct: 135 CKVANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRMARLREMGET 194
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVY+KN ++ +E L+K F ++G ITSA VM D DGKSK FGFV FEN +DA +
Sbjct: 195 TRRFTNVYIKNFADELDKEALEKLFFKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEK 254
Query: 259 AVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
AV ++ + +++ YV +AQKK+ER ELK ++EQ E ++QG NLY+KNLDD+
Sbjct: 255 AVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDT 314
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
++D+ LKQ F +G ITS KVM D +G S+G GFV F P+EA++A+ EMNGKM+ +KPL
Sbjct: 315 VNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPL 374
Query: 377 YVALAQRKEDRRARLQVCLLQ 397
YVALAQRKEDR+A+L +Q
Sbjct: 375 YVALAQRKEDRKAQLASQYMQ 395
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 167/295 (56%), Gaps = 21/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S +V D S GYG+V+F + A +A
Sbjct: 104 GAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVAND-EELNSKGYGFVHFETEESAQKA 162
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+E +N L GK + V + R LR+ G N++IKN +D +AL F F
Sbjct: 163 IEKVNGMLLEGKKVYVGKFQPRMARLREMGETTRRFTNVYIKNFADELDKEALEKLFFKF 222
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLRKQER 193
G I S V D +G+SKG+GFV F+N E A+KA+ +++ L ++++YV +K ER
Sbjct: 223 GKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNER 282
Query: 194 DTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ + + N+YVKNL ++ ++ L+++F YG ITSA VM D +G+
Sbjct: 283 SAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGR 342
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV FE D+A +AV +NGK K YV AQ+K +R+ +L Q+ Q +
Sbjct: 343 SKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQRL 397
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/369 (56%), Positives = 276/369 (74%), Gaps = 4/369 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TR SLGY YVNF + +A R LE
Sbjct: 3 SLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N + GKP+R+M+S RDPSLRKSG GNIF+KNL+K+ID++AL D FS FGNILSCKV
Sbjct: 63 MNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLEKSIDNRALFDAFSGFGNILSCKVV 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKF 202
+D NG SKGYGFV F+ +ESA+KAIEK+NG++L +V+VGHF ++ER+ E+ +F
Sbjct: 123 SDENG-SKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFKSRKERELELGARAREF 181
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E L + FG +G S VM D G+SK FGFV++ +DA RAV+
Sbjct: 182 TNVYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVDE 241
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + + YVG+AQKK ER+ ELK FEQ ++ ++QG NLY+KNLDD+IDDE+L
Sbjct: 242 MNGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQDRVTRYQGVNLYVKNLDDTIDDERL 301
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+ FSPFG+ITS KVM + G SRG GFV FS P+EA++A+ EMNGK+V SKPLYVALAQ
Sbjct: 302 RTEFSPFGTITSAKVMME-GGHSRGFGFVCFSAPDEAAKAVTEMNGKLVTSKPLYVALAQ 360
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 361 RKEERQAHL 369
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 169/295 (57%), Gaps = 25/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +LE ++ + L+D F+ G ++S +V D + S GYG+V+F + A +A
Sbjct: 88 GVGNIFVKNLEKSIDNRALFDAFSGFGNILSCKVVSDENG--SKGYGFVHFETQESAEKA 145
Query: 82 LEMLNFTPLNGKPIRVMYSH------RDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFS 133
+E +N L K ++V H R+ L R N++IKN + +D+ L + F
Sbjct: 146 IEKMNGIVL--KSLKVFVGHFKSRKERELELGARAREFTNVYIKNFGEDMDNARLGEIFG 203
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FG LS KV TD G+SKG+GFV + E AQ+A++++NG LN +++YVG +K ER
Sbjct: 204 RFGRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVDEMNGKELNGRRIYVGRAQKKGER 263
Query: 194 DTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
TE + + + N+YVKNL ++ +E L+ F +GTITSA VM +G G
Sbjct: 264 QTELKRHFEQIKQDRVTRYQGVNLYVKNLDDTIDDERLRTEFSPFGTITSAKVMMEG-GH 322
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
S+ FGFV F D+AA+AV +NGK K YV AQ+K ER+ L +Q+ + M
Sbjct: 323 SRGFGFVCFSAPDEAAKAVTEMNGKLVTSKPLYVALAQRKEERQAHLTNQYMRRM 377
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 158/289 (54%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS +V D+ +S GY +V F AQ+ +E
Sbjct: 2 ASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K V + +RD + KS N++VKNL +S L +F +G I
Sbjct: 62 TMNLDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLEKSIDNRALFDAFSGFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK +GFV+FE + A +A+E +NG + +VG + + ERELEL
Sbjct: 118 SCKVVSDENG-SKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFKSRKERELEL-- 174
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+YIKN + +D+ +L ++F FG S KVM D G S+G GF
Sbjct: 175 --------GARAREFTNVYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDERGRSKGFGF 226
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
V+++T E+A RA+ EMNGK + + +YV AQ+K +R+ L+ Q +
Sbjct: 227 VSYATHEDAQRAVDEMNGKELNGRRIYVGRAQKKGERQTELKRHFEQIK 275
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/374 (57%), Positives = 284/374 (75%), Gaps = 1/374 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V ++ L++ F++ G V+S+RVCRDL T+RSLGY YVNF +A RAL+
Sbjct: 16 SLYVGDLLPDVNEAVLFEQFSKAGPVLSIRVCRDLITKRSLGYAYVNFQQPADAERALDT 75
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N+ P+ G+P R+M+S RDPSLR+SG GNIFIKNLDK+IDHKAL+DTFSAFGNILSCKVA
Sbjct: 76 MNYEPIKGQPCRIMWSQRDPSLRRSGVGNIFIKNLDKSIDHKALYDTFSAFGNILSCKVA 135
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD-TEINKSKFT 203
TD N SKG+GFV FD +E+A AIEK+NG LLND +VYVG F+ +++R T +T
Sbjct: 136 TDGNRHSKGFGFVHFDEQEAADLAIEKVNGKLLNDMKVYVGKFIPRKDRSHTNGFNQHYT 195
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NV++KN E T+ L F +YG+I SAVVM+DG+G SK FGFV+FE+ + A+ AV+A+
Sbjct: 196 NVFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKDGEGLSKGFGFVSFESHEAASAAVQAV 255
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ + ++ Y G+AQKK+ER EL + E+ +E ++QG NLYIKNL+D++ +EKLK
Sbjct: 256 HNSIVNGRQVYCGRAQKKNERSRELMRRKEEQRQERLSRYQGVNLYIKNLEDTLGEEKLK 315
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
FS FGSITS K+M D G S+G GFV FS+PEEA++A+ EMNG++VVSKPLYVALAQR
Sbjct: 316 SEFSKFGSITSAKIMTDEFGHSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQR 375
Query: 384 KEDRRARLQVCLLQ 397
KE+R+A L +Q
Sbjct: 376 KEERQAHLAAQRMQ 389
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 158/294 (53%), Gaps = 22/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ LYD F+ G ++S +V D R S G+G+V+F + A A
Sbjct: 101 GVGNIFIKNLDKSIDHKALYDTFSAFGNILSCKVATD-GNRHSKGFGFVHFDEQEAADLA 159
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTFSA 134
+E +N LN ++V P +S N+FIKN + L+D F
Sbjct: 160 IEKVNGKLLND--MKVYVGKFIPRKDRSHTNGFNQHYTNVFIKNFGEDFTDTMLYDVFEK 217
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
+G+I+S V D G SKG+GFV F++ E+A A++ ++ ++N +QVY G +K ER
Sbjct: 218 YGSIVSAVVMKDGEGLSKGFGFVSFESHEAASAAVQAVHNSIVNGRQVYCGRAQKKNERS 277
Query: 195 TEINKSK------------FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ + K N+Y+KNL ++ EE L+ F ++G+ITSA +M D G S
Sbjct: 278 RELMRRKEEQRQERLSRYQGVNLYIKNLEDTLGEEKLKSEFSKFGSITSAKIMTDEFGHS 337
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L Q Q +
Sbjct: 338 KGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRKEERQAHLAAQRMQRI 391
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/371 (56%), Positives = 289/371 (77%), Gaps = 2/371 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVGDL+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++ + +A+
Sbjct: 39 SASLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKAI 98
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+ R+M+S RDP+LRK G+ NIFIKNL ID+KAL+DTFS FGNILS K
Sbjct: 99 EKLNYTPIKGRLCRIMWSQRDPALRKKGSANIFIKNLHSDIDNKALYDTFSVFGNILSSK 158
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK- 201
+ATD G+SKG+GFV F+++ +A++AI+ LNGMLLN ++++VG L ++ERD+++ +SK
Sbjct: 159 IATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKERDSQLEESKA 218
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN++ TT+E+ + F +YG + SA + + DGK K FGFV+FEN +DAA+AV
Sbjct: 219 NFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAV 278
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNG +F D+E +V +AQKK ER ELK Q+E + E K+QG NL+IKNLDDSIDDE
Sbjct: 279 EELNGSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFIKNLDDSIDDE 338
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK+ F+P+G+ITS +VMR +G SRG GFV FSTPEEA++A+ E N ++V KPLYVA+
Sbjct: 339 KLKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 398
Query: 381 AQRKEDRRARL 391
AQRK+ RR++L
Sbjct: 399 AQRKDVRRSQL 409
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 162/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L +++ + LYD F+ G ++S ++ D T +S G+G+V+F + A A
Sbjct: 126 GSANIFIKNLHSDIDNKALYDTFSVFGNILSSKIATD-ETGKSKGFGFVHFEDDTAAKEA 184
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAF 135
++ LN LNG+ I V RD L +S A NI++KN++ + + FS +
Sbjct: 185 IDALNGMLLNGQEIFVGPHLSRKERDSQLEESKANFTNIYVKNINLETTDEEFTELFSKY 244
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS + +G+ KG+GFV F+N E A KA+E+LNG D++++V +K ER
Sbjct: 245 GKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAVEELNGSQFKDQELFVSRAQKKYERMQ 304
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K +K+ N+++KNL +S +E L++ F YG ITS VMR +GKS+
Sbjct: 305 ELKKQYEASRLEKMAKYQGVNLFIKNLDDSIDDEKLKEEFAPYGNITSVRVMRTENGKSR 364
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 365 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 414
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 155/283 (54%), Gaps = 15/283 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ +LD ++ L+D FS G++ S +V D + S GY +V F++ E+ +KAI
Sbjct: 39 SASLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKAI 98
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
EKLN + + + +RD + K N+++KNL + L +F +G I
Sbjct: 99 EKLNYTPIKGRLCRI----MWSQRDPALRKKGSANIFIKNLHSDIDNKALYDTFSVFGNI 154
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S+ + D GKSK FGFV+FE+ A A++ALNG + +E +VG + ER+ +L+
Sbjct: 155 LSSKIATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKERDSQLE 214
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
E+ F N+Y+KN++ DE+ +LFS +G + S + + G +G G
Sbjct: 215 --------ESKANF--TNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFG 264
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
FV F E+A++A+ E+NG + L+V+ AQ+K +R L+
Sbjct: 265 FVDFENHEDAAKAVEELNGSQFKDQELFVSRAQKKYERMQELK 307
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L++ +L+ ++ D +L + F G + SVRV R +S G+G+V FS +EA +A+
Sbjct: 324 VNLFIKNLDDSIDDEKLKEEFAPYGNITSVRVMR-TENGKSRGFGFVCFSTPEEATKAIT 382
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 383 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 417
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/372 (58%), Positives = 284/372 (76%), Gaps = 5/372 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA---QEAAR 80
+SLYVGDLE +VT++QL++LF+ +G V S+RVCRD TRRSLGY YVN+++A Q A R
Sbjct: 21 SSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAAER 80
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
A+E LN+ LNGKP+R+M+SHRDPS RKSG GNIFIKNLDK+ID KALHDTFSAFG ILS
Sbjct: 81 AMETLNYHVLNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKSIDAKALHDTFSAFGKILS 140
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD NG SKGYGFV F+++ +A +AI+ +N + K VYVG F ++ +R K
Sbjct: 141 CKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQ--GKD 198
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TNV+VKNL +++L K E+G +TSAVVM+D G SK FGF+NF++++ AA+ V
Sbjct: 199 VYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGSSKGFGFINFKDAECAAKCV 258
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
EALN K+ K Y G+AQKK+ERE L+ + E++ +E K+QG NLY+KNL D +DD+
Sbjct: 259 EALNDKEIGGKVLYAGRAQKKTEREAMLRQKVEESKQERYLKYQGMNLYVKNLADEVDDD 318
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L+ LF+ G+ITSCKVM+D SG S+G GFV F++ +EA+RA+ EMNGKMV KPLYVAL
Sbjct: 319 ALRDLFTSCGTITSCKVMKDTSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLYVAL 378
Query: 381 AQRKEDRRARLQ 392
AQRK+ RRA+L+
Sbjct: 379 AQRKDVRRAQLE 390
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 150/287 (52%), Gaps = 15/287 (5%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + G ++++ +L+ ++ L+D F+ G+++S +V D + S GYG+V+F +
Sbjct: 105 SARKSGVGNIFIKNLDKSIDAKALHDTFSAFGKILSCKVATD-ANGVSKGYGFVHFEDQA 163
Query: 77 EAARALEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
A RA++ +N + GK + V D K N+F+KNL + L +
Sbjct: 164 AADRAIQTVNQKEIEGKIVYVGPFQKRADRPQGKDVYTNVFVKNLPAELGDDELSKMATE 223
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG + S V D G SKG+GF+ F + E A K +E LN + K +Y G +K ER+
Sbjct: 224 FGEVTSAVVMKDEKGSSKGFGFINFKDAECAAKCVEALNDKEIGGKVLYAGRAQKKTERE 283
Query: 195 TEIN------------KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
+ K + N+YVKNL++ ++ L+ F GTITS VM+D GKS
Sbjct: 284 AMLRQKVEESKQERYLKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKDTSGKS 343
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
K FGFV F + D+A RAV +NGK K YV AQ+K R +L+
Sbjct: 344 KGFGFVCFTSHDEATRAVTEMNGKMVKGKPLYVALAQRKDVRRAQLE 390
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/384 (56%), Positives = 280/384 (72%), Gaps = 16/384 (4%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY+ F+ G ++S+RV RD TRRSLGY VNF ++A R
Sbjct: 8 YSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLD++ID K L+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ +E A++AIEK+NGM LND +V+VG F +++R E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVY+KNL E +E LQ FG +G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ-----------GAN 307
AVE +NGK + K+ YVG+AQKK ER+ ELKH+F Q MK+ K + G N
Sbjct: 247 AVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ-MKQDKHKIERVPQDRSVRCKGVN 305
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDDE+L++ FSPFG+ITS KV + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMN 364
Query: 368 GKMVVSKPLYVALAQRKEDRRARL 391
GK+V +KPLYVALAQRKE+R+A L
Sbjct: 365 GKIVATKPLYVALAQRKEERQAHL 388
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 174/307 (56%), Gaps = 39/307 (12%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ LYD F+ G ++S +V D + S GYG+V+F +EA RA
Sbjct: 97 GVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERA 154
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+E +N LN + V S RD R++ G N++IKNL + +D + L D F
Sbjct: 155 IEKMNGMFLNDHKVFVGRFKSRRD---RQAELGARAKEFTNVYIKNLGEDMDDERLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
FG LS KV TD +G+SKG+GFV F+ E A+KA+E++NG LN KQ+YVG +K E
Sbjct: 212 GRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVE 271
Query: 193 RDTEINKSKF-----------------------TNVYVKNLSESTTEEDLQKSFGEYGTI 229
R TE+ K KF N+YVKNL + +E L+K F +GTI
Sbjct: 272 RQTEL-KHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTI 330
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
TSA V +G G+SK FGFV F + ++A +AV +NGK K YV AQ+K ER+ L
Sbjct: 331 TSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRKEERQAHLS 389
Query: 290 HQFEQNM 296
+Q+ Q M
Sbjct: 390 NQYMQRM 396
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S GY V F
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
E A++A++ +N ++ K V + +RD + KS N++VKNL S + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE ++A RA+E +NG +D + +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
+R+ EL + A +F N+YIKNL + +DDE+L+ LF FG S KVM D
Sbjct: 177 RDRQAELGAR--------AKEF--TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELK 277
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 37/227 (16%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ +L ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 184 GARAKEF--TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGK-SKGFGFVSFER 240
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR---------------------------DPSLR 107
++A +A+E +N LNGK I V + + D S+R
Sbjct: 241 HEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVR 300
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQK 167
G N+++KNLD ID + L FS FG I S KV + G+SKG+GFV F + E A K
Sbjct: 301 CKGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATK 358
Query: 168 AIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
A+ ++NG ++ K +YV RK+ER ++ +N Y++ ++ ++
Sbjct: 359 AVTEMNGKIVATKPLYVALAQRKEER-----QAHLSNQYMQRMASTS 400
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+R G V
Sbjct: 1 MNPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRD--RITRRSLGYASVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F E+A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQLEDAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/375 (57%), Positives = 283/375 (75%), Gaps = 14/375 (3%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
++SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRRSL Y YVN+ NA +A RAL
Sbjct: 9 SSSLYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAADAERAL 68
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN TP+ GKP R+M+S RDPSLRKSG GN+FIKNLDK IDHKAL+DTFSAFGNILSCK
Sbjct: 69 DTLNNTPIRGKPCRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCK 128
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKS 200
V TD N SKG+GFV +++++SA KAI K+NGM++N ++V+VG F +ER TEI
Sbjct: 129 VVTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEI--- 185
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARA 259
KFTNV+ KNL+E T + L++ YGTIT+ +M D GKSK F F NFE++D A
Sbjct: 186 KFTNVFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADAAKNV 245
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VE NGK F K Y G+AQKK ERE ELKH FE K+QG NLYIKN+DDSID+
Sbjct: 246 VEIENGKVFHGKPLYAGRAQKKIEREAELKHTFET-------KYQGVNLYIKNIDDSIDN 298
Query: 320 EKLKQLFSPFGSITSCKVMR-DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
+KL+++FS FG+ITS VM+ D + S+G GFV +++P+EA+RA+ EMNG+M+ +KPLYV
Sbjct: 299 DKLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEATRAVTEMNGRMIGTKPLYV 358
Query: 379 ALAQRKEDRRARLQV 393
ALAQRK+ RRA+L++
Sbjct: 359 ALAQRKDIRRAQLEM 373
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 165/305 (54%), Gaps = 20/305 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + LYD F+ G ++S +V D S G+G+V++ + A +A
Sbjct: 96 GVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DNNSSKGFGFVHYESQDSADKA 154
Query: 82 LEMLNFTPLNGK-----PIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ +N +NG+ P + P+ K N+F KNL + + L + + +G
Sbjct: 155 IAKVNGMMINGQKVFVGPFKSSKERGQPTEIK--FTNVFFKNLAEDVTSDQLKELLAPYG 212
Query: 137 NILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
I + + D G+SKG+ F F++ ++A+ +E NG + + K +Y G +K ER+
Sbjct: 213 TITNVAIMLDEKTGKSKGFAFANFESADAAKNVVEIENGKVFHGKPLYAGRAQKKIEREA 272
Query: 196 EI-----NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVN 249
E+ K + N+Y+KN+ +S + L++ F ++GTITSAVVM+D SK FGFV
Sbjct: 273 ELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVC 332
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER--ELELKHQ--FEQNMKEA-ADKFQ 304
+ + D+A RAV +NG+ K YV AQ+K R +LE++HQ F+ M++ A +
Sbjct: 333 YTSPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFKAGMRQTMAPAYS 392
Query: 305 GANLY 309
G ++
Sbjct: 393 GGPVF 397
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/370 (58%), Positives = 282/370 (76%), Gaps = 3/370 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLDKAID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLIRDKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGTSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV +E ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK D K YV +AQKK+ER+ ELK +FE+ K+ + G NLY+KNLDDSIDDE+
Sbjct: 243 LNGKDMGDGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS +G+ITS KVM D G S+G GFV F +P EA+ A+ E+NG+++ SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALA 362
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 363 QRKEERKAHL 372
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 159/283 (56%), Gaps = 16/283 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + I+ L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N L+ DK + + +RD + +S NV++KNL ++ + + +F +G I
Sbjct: 62 TMNFDLIRDKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 118 SCKVATDEKGTSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GF
Sbjct: 177 -------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 351 VAFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQ 392
VA+ T E A A+ +NGK M K LYVA AQ+K +R+ L+
Sbjct: 228 VAYETTEAAEAAVQALNGKDMGDGKTLYVARAQKKAERQQELK 270
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 164/295 (55%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATD-EKGTSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV ++ E+A+ A++ LNG + D K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGDGKTLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL +S +E L+K F YGTITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/389 (55%), Positives = 284/389 (73%), Gaps = 14/389 (3%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY+ F+ G ++S+RV RD +TRRSLGY VNF ++A R
Sbjct: 8 YSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLD++ID K L+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ +E A++AIEK+NGM LND++V+VG F +++R E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVY+KNL E +E LQ F +G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQF----------EQNMKEAADKFQGANL 308
AV+ +NGK + K+ YVG+AQKK ER+ ELKH+F EQ ++ + + QG NL
Sbjct: 247 AVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNL 306
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y+KNLDD IDDE+L++ FSPFG+ITS KV + G S+G GFV FS+PEEA++A+ EMNG
Sbjct: 307 YVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNG 365
Query: 369 KMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
++V +KPLYVALAQRKE+R+A L +Q
Sbjct: 366 RIVATKPLYVALAQRKEERQAHLSNQYMQ 394
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 176/307 (57%), Gaps = 39/307 (12%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ LYD F+ G ++S +V D + S GYG+V+F +EA RA
Sbjct: 97 GVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERA 154
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+E +N LN + + V S RD R++ G N++IKNL + +D + L D F
Sbjct: 155 IEKMNGMFLNDRKVFVGRFKSRRD---RQAELGARAKEFTNVYIKNLGEDMDDERLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG LS KV TD +G+SKG+GFV F+ E A+KA++++NG LN KQ+YVG +K E
Sbjct: 212 SRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVE 271
Query: 193 RDTEINKSKF-----------------------TNVYVKNLSESTTEEDLQKSFGEYGTI 229
R TE+ K KF N+YVKNL + +E L+K F +GTI
Sbjct: 272 RQTEL-KHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTI 330
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
TSA V +G G+SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L
Sbjct: 331 TSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLS 389
Query: 290 HQFEQNM 296
+Q+ Q M
Sbjct: 390 NQYMQRM 396
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 167/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D +S GY V F
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
E A++A++ +N ++ K V + +RD + KS N++VKNL S + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE ++A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
+R+ EL + A +F N+YIKNL + +DDE+L+ LFS FG S KVM D
Sbjct: 177 RDRQAELGAR--------AKEF--TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELK 277
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M + + A+LY+ +L + + L + FSP G I S +V RD + S G V F
Sbjct: 1 MNPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
E+A RAL MN ++ KP+ + +QR R
Sbjct: 61 QLEDAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/384 (56%), Positives = 280/384 (72%), Gaps = 16/384 (4%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY+ F+ G ++S+RV RD TRRSLGY VNF ++A R
Sbjct: 8 YSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLD++ID K L+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ +E A++AIEK+NGM LND +V+VG F +++R E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVY+KNL E +E LQ FG +G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ-----------GAN 307
AVE +NGK + K+ YVG+AQKK ER+ ELKH+F Q MK+ K + G N
Sbjct: 247 AVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ-MKQDKHKIERVPQDRSVRCKGVN 305
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDDE+L++ FSPFG+ITS KV + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMN 364
Query: 368 GKMVVSKPLYVALAQRKEDRRARL 391
GK+V +KPLYVALAQRKE+R+A L
Sbjct: 365 GKIVATKPLYVALAQRKEERQAHL 388
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 174/307 (56%), Gaps = 39/307 (12%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ LYD F+ G ++S +V D + S GYG+V+F +EA RA
Sbjct: 97 GVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERA 154
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+E +N LN + V S RD R++ G N++IKNL + +D + L D F
Sbjct: 155 IEKMNGMFLNDHKVFVGRFKSRRD---RQAELGARAKEFTNVYIKNLGEDMDDERLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
FG LS KV TD +G+SKG+GFV F+ E A+KA+E++NG LN KQ+YVG +K E
Sbjct: 212 GRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVE 271
Query: 193 RDTEINKSKF-----------------------TNVYVKNLSESTTEEDLQKSFGEYGTI 229
R TE+ K KF N+YVKNL + +E L+K F +GTI
Sbjct: 272 RQTEL-KHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTI 330
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
TSA V +G G+SK FGFV F + ++A +AV +NGK K YV AQ+K ER+ L
Sbjct: 331 TSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRKEERQAHLS 389
Query: 290 HQFEQNM 296
+Q+ Q M
Sbjct: 390 NQYMQRM 396
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 166/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S GY V F
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
E A++A++ +N ++ K V + +RD + KS N++VKNL S + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE ++A RA+E +NG +D + +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
+R+ EL + A +F N+YIKNL + +DDE+L+ LF FG S KVM D
Sbjct: 177 RDRQAELGAR--------AKEF--TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELK 277
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 37/227 (16%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ +L ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 184 GARAKEF--TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGK-SKGFGFVSFER 240
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR---------------------------DPSLR 107
++A +A+E +N LNGK I V + + D S+R
Sbjct: 241 HEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVR 300
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQK 167
G N+++KNLD ID + L FS FG I S KV + G+SKG+GFV F + E A K
Sbjct: 301 CKGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATK 358
Query: 168 AIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
A+ ++NG ++ K +YV RK+ER ++ +N Y++ ++ ++
Sbjct: 359 AVTEMNGKIVATKPLYVALAQRKEER-----QAHLSNQYMQRMASTS 400
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+R G V
Sbjct: 1 MNPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRD--RITRRSLGYASVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F E+A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQLEDAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/374 (58%), Positives = 271/374 (72%), Gaps = 5/374 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL V + QL+ LF+Q+ V +VRVCRD+ + SLGYGYVNF + QEA RALE
Sbjct: 35 ASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALE 94
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNFTPL GK IRVM+S+RDPSLRKSG N+F+KNL+ ID K L++ FS+FG ILSCKV
Sbjct: 95 ALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKV 154
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
ATD GQSKGYGFVQ++ EESA+ AI LNGML N+++++VG +R+++R+ KFT
Sbjct: 155 ATDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREV-----KFT 209
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVY+KNL +E+DL++ F +G ITSAVVMRD DG SKCFGFVNF+ + A AVE
Sbjct: 210 NVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKA 269
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NGK DK YVG+AQKK ER+ ELK +F + DK G NLY+KN+DD I+DE LK
Sbjct: 270 NGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLK 329
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+LF FG + SCKVM D G S+GSGFV+F+T E RA+ MNG++V KPLYV LAQ
Sbjct: 330 KLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQP 389
Query: 384 KEDRRARLQVCLLQ 397
KE+R+A L Q
Sbjct: 390 KEERKAMLMAHFAQ 403
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 157/299 (52%), Gaps = 19/299 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L+V +LE N+ LY++F+ G ++S +V D S +S GYG+V + + A A
Sbjct: 121 GRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVATD-SAGQSKGYGFVQYETEESAEAA 179
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+ LN N + + V RD R+ N++IKNL L F+ FG I
Sbjct: 180 INGLNGMLANNRKMFVGLHMRRRD---REVKFTNVYIKNLPTEFSEDDLRQEFAPFGEIT 236
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE------- 192
S V D +G SK +GFV F E A +A+EK NG + DK +YVG +K+E
Sbjct: 237 SAVVMRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKT 296
Query: 193 -----RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
RD +++K N+Y+KN+ + +E L+K F E+G + S VM D G+SK GF
Sbjct: 297 RFGRGRDNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGF 356
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ-NMKEAADKFQG 305
V+F ++ RA+ +NG+ K YVG AQ K ER+ L F Q N+ AA ++ G
Sbjct: 357 VSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPKEERKAMLMAHFAQRNLAMAASQYAG 415
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/370 (55%), Positives = 288/370 (77%), Gaps = 4/370 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL +VT++ LY++F+ +G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + G+PIR+M+SHRDP LR+SG GNIFIKNL+ +ID+KAL+DTFS FG+ILS KV
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
+ +G S+G+GFV F+ E+AQKAI +NGMLLND++V+VGHF +Q+R+ E+
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKNL E+ LQ F ++G S VMRD +G+S+ FGF+NFE ++A +AV+
Sbjct: 190 FTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVD 249
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG NLY+KNLDDSI+D++
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDR 309
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G ITS KVM + S S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 369 QRKEERKAIL 378
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/354 (31%), Positives = 186/354 (52%), Gaps = 27/354 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V + R G+G+V+F + A +A
Sbjct: 97 GMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R G NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G S KV D NGQS+G+GF+ F+ E AQKA++ +NG ++ + +YVG ++ ER
Sbjct: 215 GKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQN 274
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + N+YVKNL +S ++ L++ F YG ITSA VM + SK
Sbjct: 275 ELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESS-HSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM-KEAADK 302
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ + + +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRSVLSS 393
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
FQ Y L ++ + ++ + S + + DP ++ G + P
Sbjct: 394 FQQPTSY---LLPAVHQSTTQTMY--YSSASIAPMQPDPRWTAQPHGPSSTCPP 442
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 156/281 (55%), Gaps = 16/281 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS +V D+ +S GY ++ F A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + RD + +S N+++KNL S + L +F +G+I S
Sbjct: 72 MNFEMIKGQPIRI----MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ V+ + G S+ FGFV+FE + A +A+ +NG +D++ +VG + + +RE EL
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A N+Y+KNL +D++ L+ LFS FG S KVMRD +G SRG GF+
Sbjct: 184 -------GARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFI 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F EEA +A+ MNGK V + LYV AQ++ +R+ L+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELK 277
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 118/213 (55%), Gaps = 23/213 (10%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A G T++YV +L ++ + L DLF+Q G+ SV+V RD S +S G+G++NF +E
Sbjct: 185 ARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEE 243
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKS------------GAGNIFIKNLDK 121
A +A++ +N ++G+ + V + R L++ N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+I+ L + FS +G I S KV T+ + SKG+GFV F + E A KA+ ++NG ++ K
Sbjct: 304 SINDDRLKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 362
Query: 182 VYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
+YV RK+ER K+ TN Y + LS S
Sbjct: 363 LYVALAQRKEER-----KAILTNQYRRRLSRSV 390
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 18/199 (9%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFEN 252
DT + +++YV +L TE L + F GTI S V RD +S + ++NF+
Sbjct: 2 DTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
DA RA++ +N + + + S R+ L+ + N++IKN
Sbjct: 62 PADAERALDTMNFEMIKGQPIRI----MWSHRDPGLR------------RSGMGNIFIKN 105
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
L++SID++ L FS FGSI S KV+ + G SRG GFV F T E A +A+ MNG ++
Sbjct: 106 LENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLN 164
Query: 373 SKPLYVALAQRKEDRRARL 391
+ ++V + ++ R A L
Sbjct: 165 DRKVFVGHFKSRQKREAEL 183
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/384 (54%), Positives = 284/384 (73%), Gaps = 9/384 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N +G G + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y
Sbjct: 2 NASGAG-----YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNL+ +ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFS FGNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF
Sbjct: 117 DTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E+ + FTN+YVKNL E LQ F ++G + S VMRD G S+ FGF
Sbjct: 176 RREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VNFE ++A +AV +NG + + YVG+AQK+ ER+ ELK +FE ++ ++ QG N
Sbjct: 236 VNFEKHEEAQKAVMDMNGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARL 391
G+++ +KPLYVALAQRKE+R+A L
Sbjct: 355 GRIIGTKPLYVALAQRKEERKAIL 378
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +LE ++ + LYD F+ G ++S +V C D +R G+G+V+F + A +
Sbjct: 97 GVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR---GFGFVHFETHEAAQQ 153
Query: 81 ALEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSA 134
A+ +N LN + + V + R+ L R + NI++KNL +D + L D FS
Sbjct: 154 AISTMNGMLLNDRKVFVGHFKSRREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQ 213
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +LS KV D +G S+G+GFV F+ E AQKA+ +NGM ++ + +YVG ++ ER
Sbjct: 214 FGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLYVGRAQKRGERQ 273
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F YG ITSA VM +G G S
Sbjct: 274 NELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 164/292 (56%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SGAG ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGAGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS NV++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNVFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL + A F N+Y+KNL +D+ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAELGAR--------ATAF--TNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SRG GFV F EEA +A+++MNG V + LYV AQ++ +R+ L+
Sbjct: 226 DSGHSRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLYVGRAQKRGERQNELK 277
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/370 (58%), Positives = 282/370 (76%), Gaps = 3/370 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLDKAID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV +E ++ A AV+A
Sbjct: 183 TNVYVKNFTEEFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ K+ + G NLY+KNLDDSIDDE+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS +G+ITS KVM D G S+G GFV F +P EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDDEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 363 QRKEERKAHL 372
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 158/283 (55%), Gaps = 16/283 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + I+ L + FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N L+ +K + + +RD + +S NV++KNL ++ + + +F +G I
Sbjct: 62 TMNFDLIRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 118 SCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GF
Sbjct: 177 -------EKAKLF--TNVYVKNFTEEFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 351 VAFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQ 392
VA+ T E A A+ +NGK M K LYVA AQ+K +R+ L+
Sbjct: 228 VAYETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELK 270
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 164/295 (55%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEEFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV ++ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL +S +E L+K F YGTITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDDEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/416 (51%), Positives = 295/416 (70%), Gaps = 43/416 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAITRRSLGYAYVNYNTTVDGEKAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+V+VGH + K++R ++ K+
Sbjct: 180 VAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTN+YVKN+ TEE+ ++ F ++G +TSA + RD + GKS+ FGFVNF N + AA A
Sbjct: 240 NFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHAATA 299
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LNGK F ++ YVG+AQKK ERE EL+ +E E A K+QG NLY+KNLDD IDD
Sbjct: 300 VDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARMEKASKYQGVNLYVKNLDDEIDD 359
Query: 320 EKLKQLFSPFGSITSCKVMRD--------------------------------------- 340
EKL++LF+PFG+ITS KVMRD
Sbjct: 360 EKLRELFAPFGAITSAKVMRDTPAETADAEDKKEKDEEKNKENKKEGEAETEEASAPKAK 419
Query: 341 -PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
P G S+G GFV F+ P+EA++A+ +MN +MV +KPLYVALAQRK+ R+++L+ +
Sbjct: 420 RPLGKSKGFGFVCFNNPDEATKAVSDMNQRMVSNKPLYVALAQRKDVRKSQLEASI 475
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/369 (56%), Positives = 275/369 (74%), Gaps = 1/369 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL V+DS L F+++G V+S RVCRDL+TR+SLGYGYVNF + + A +ALE
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+LN+ PL G+PIR+M+S RDPSLRKSG GNIFIKNLDK+I+ K L+DTFS FG ILSCK+
Sbjct: 73 VLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKI 132
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
D NGQSKGYGFV F+ EE A++AIEK+N M++ D+ VYVG F+ K ER ++ K KF
Sbjct: 133 VMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN 192
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+YVKN T E L++ F E+G I SA VM+D +GKSK FGFV + + D A AV +
Sbjct: 193 NLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTM 252
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ-GANLYIKNLDDSIDDEKL 322
+GK+ + + Y +AQ+K ER+ ELK + E+ E + NLY+KNLDD+IDD++L
Sbjct: 253 HGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRL 312
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS GSITS KVM+D + S+G GFV F+ PE+A+RA+ +MNG ++ SKPLYVALAQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 383 RKEDRRARL 391
RKEDRRA+L
Sbjct: 373 RKEDRRAKL 381
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 160/281 (56%), Gaps = 17/281 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + AL FS G +LS +V DL QS GYG+V F++ + A++A+E
Sbjct: 14 SLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEV 73
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L + + + +RD + KS N+++KNL +S +++L +F +G I S
Sbjct: 74 LNYEPLMGRPIRI----MWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
++ D +G+SK +GFV+FE + A RA+E +N D+ YVGK K+ER
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTER------- 182
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
K A K + NLY+KN D+EKLK++FS FG I S VM+D G S+G GFV
Sbjct: 183 -----KSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+ P+ A A+ M+GK + + LY A AQRKE+R+ L+
Sbjct: 238 CYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEELK 278
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 163/298 (54%), Gaps = 26/298 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ +LYD F+ G+++S ++ D +S GYG+V+F + A RA
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERA 157
Query: 82 LEMLNFTPLNGKPIRVMY-------SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+E +N + RV+Y + R RK N+++KN D++ L + FS
Sbjct: 158 IEKINNMIIRD---RVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNEKLKEMFSE 214
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG I S V D G+SKG+GFV + + + A+ A+ ++G + + +Y RK+ER
Sbjct: 215 FGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQ 274
Query: 195 TEINKSKF--------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
E+ K K N+YVKNL ++ ++ L+++F +G+ITSA VM+D +
Sbjct: 275 EEL-KQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANN 333
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+SK FGFV F N + AARAV +NG K YV AQ+K +R +L + +Q + +
Sbjct: 334 RSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRLAQ 391
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/412 (53%), Positives = 293/412 (71%), Gaps = 30/412 (7%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G NA + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++
Sbjct: 43 GSTNAPH--SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYN 100
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N + RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+
Sbjct: 101 NTADGERALEELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDIAIDNKALHDTFA 160
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFGNILSCKVA D NG SKGYGFV ++ E+A AI+ +NGMLLN+K+VYVGH + K+ER
Sbjct: 161 AFGNILSCKVAQDENGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVYVGHHIPKKER 220
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNF 250
++ + K+ FTNVYVKN+ ++++ + F +G ITSA + RDGD G S+ FGFVNF
Sbjct: 221 QSKFDEMKANFTNVYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGFGFVNF 280
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
+ + AA AV+AL+ + + +VG+AQKK ERE EL+ Q+E E A K+QG NLY+
Sbjct: 281 SSHEAAAAAVDALHETELKGQALFVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYV 340
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-------------------------SGIS 345
KNLDD IDDE+L+Q FSP+G+ITS KVMRD G S
Sbjct: 341 KNLDDEIDDERLRQEFSPYGTITSAKVMRDSLDSPKEKDGEESKVGEPEEKATDKKQGKS 400
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
+G GFV FS P+EAS+A+ EMN +MV KPLYVALAQRK+ R+++L+ + Q
Sbjct: 401 KGFGFVCFSNPDEASKAVAEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQQ 452
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/387 (53%), Positives = 292/387 (75%), Gaps = 2/387 (0%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A++ LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIDQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
L ++ERD+++ ++K +TN+YVKN++ TT+E Q+ F ++G I SA + +D DGK K
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKG 260
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+EN +DA +AVEALN + ++ YVG+AQKK+ER LK Q+E E K+Q
Sbjct: 261 FGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDDS+DDEKL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRSENGKSKGFGFVCFSTPEEATKAIT 380
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARL 391
E N ++V KPLYVA+AQRK+ RR++L
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQL 407
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 162/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L ++ + LYD F+ G ++S ++ D +S G+G+V+F A A
Sbjct: 124 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEA 182
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ LN LNG+ I V RD L ++ A N+++KN++ + + F+ F
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEKFQEMFAQF 242
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG---------H 186
G I+S + D +G+ KG+GFV ++N E A KA+E LN LN +++YVG H
Sbjct: 243 GPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMH 302
Query: 187 FLRKQE---RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
L+KQ R ++ K + N++VKNL +S +E L++ F YGTITSA VMR +GKSK
Sbjct: 303 VLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRSENGKSK 362
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 363 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 412
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 25/195 (12%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVE 261
++YV +L + +E L F G+++S V RD K+ + +VNF + + +A++
Sbjct: 38 ASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAID 97
Query: 262 ALNGKKFDDK----EWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
LN + W S+R+ L+ K N++IKNL I
Sbjct: 98 QLNYTPIKGRLCRIMW--------SQRDPSLR------------KKGSGNIFIKNLHPDI 137
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++ L FS FG I S K+ D +G S+G GFV F A A+ +NG ++ + +Y
Sbjct: 138 DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIY 197
Query: 378 VALAQRKEDRRARLQ 392
VA +++R ++L+
Sbjct: 198 VAPHLSRKERDSQLE 212
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ +V D +L + F G + S +V R +S G+G+V FS +EA +A+
Sbjct: 322 VNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRS-ENGKSKGFGFVCFSTPEEATKAIT 380
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 415
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/434 (49%), Positives = 291/434 (67%), Gaps = 55/434 (12%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N NQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 44 NNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 103
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 104 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG 163
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 164 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 223
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ K+ FTN+Y+KN+ TEE+ +K F ++G ITSA + RD +GKS+ FGFVN+ +
Sbjct: 224 FDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHE 283
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ ++ K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 284 SAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 343
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---------------------------- 346
D +DDEKL++LF P+G+ITS KVMRD + R
Sbjct: 344 DDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEE 403
Query: 347 -------------------------GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
G GFV FS+P+EAS+A+ EMN +MV KPLYVALA
Sbjct: 404 KPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALA 463
Query: 382 QRKEDRRARLQVCL 395
QRK+ RR++L+ +
Sbjct: 464 QRKDVRRSQLEASI 477
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 204/378 (53%), Positives = 286/378 (75%), Gaps = 4/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A ++ SLY+GDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ATRAEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD +ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G+ILSCKV D G S+GYGFV F+ +E+A +AI+ +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E +FTNVY+KN E ++ L++ F +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG NLY+KNL
Sbjct: 242 EEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDD++L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 361 KPLYVALAQRKEERKAIL 378
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 112/295 (37%), Positives = 174/295 (58%), Gaps = 25/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +L+ ++ + LYD F+ G ++S +V C + +R GYG+V+F + A R
Sbjct: 97 GVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR---GYGFVHFETQEAANR 153
Query: 81 ALEMLNFTPLNGKPIRVMY--SHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFS 133
A++ +N LN + + V + S R+ L + GA N++IKN + +D K L + FS
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRREREL-EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFS 212
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFGN LS KV D +G+S+G+GFV + N E AQKA+ ++NG +N + VYVG ++ ER
Sbjct: 213 AFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIER 272
Query: 194 DTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E IN+ + N+YVKNL + ++ L+K F YGTITS VM +G G
Sbjct: 273 QGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG-GH 331
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 161/282 (57%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
+++I +L + L++ FS G I+S +V D+ +S GY ++ F A++A++
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ + + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D G S+ +GFV+FE + A RA++ +NG +D++ +VG + + ERELE
Sbjct: 127 SCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEY-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+YIKN + +DD++LK++FS FG+ S KVM D SG SRG GF
Sbjct: 184 --------GAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V + EEA +A+ EMNGK V + +YV AQ++ +R+ L+
Sbjct: 236 VNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELK 277
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/370 (59%), Positives = 279/370 (75%), Gaps = 3/370 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ +S L+D F+ G V+S+RVCRD+ +RRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF L KPIR+M+S RDPSLR+SG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLLRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKANSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV FE ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ K+ D G NLY+KNLDDSIDDE+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHDSAFGVNLYVKNLDDSIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L + FSP+G+ITS KVM D G S+G GFV F + EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LCKEFSPYGTITSAKVMTDEEGRSKGFGFVCFISANEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 363 QRKEERKAHL 372
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 159/283 (56%), Gaps = 16/283 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + I+ L D FS+ G +LS +V D ++ +S GY +V F A++A++
Sbjct: 2 ASLYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N LL +K + + +RD + +S NV++KNL ++ + + +F +G I
Sbjct: 62 TMNFDLLRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKTIDNKAIYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 118 SCKVATDEKANSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GF
Sbjct: 177 -------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 351 VAFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQ 392
VAF T E A A+ +NGK M K LYVA AQ+K +R+ L+
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELK 270
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 164/295 (55%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVATD-EKANSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV F+ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL +S +E L K F YGTITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKKKRHDSAFGVNLYVKNLDDSIDDERLCKEFSPYGTITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F ++++A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFISANEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 283/370 (76%), Gaps = 3/370 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLDKAID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN ++ +E L+++F YG ITS VM DGKSK FGFV +E ++ A AV+A
Sbjct: 183 TNVYIKNFTDEFDDEKLKENFEPYGKITSYKVMSKDDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ K+ + G NLY+KNLDDSIDDE+
Sbjct: 243 LNGKDMGEGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS +G+ITS KVM D G S+G GFV F +P EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 363 QRKEERKAHL 372
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 158/283 (55%), Gaps = 16/283 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + I+ L + FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N L+ +K + + +RD + +S NV++KNL ++ + + +F +G I
Sbjct: 62 TMNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 118 SCKVATDEKGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+YIKN D DDEKLK+ F P+G ITS KVM G S+G GF
Sbjct: 177 -------EKAKLF--TNVYIKNFTDEFDDEKLKENFEPYGKITSYKVMSKDDGKSKGFGF 227
Query: 351 VAFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQ 392
VA+ T E A A+ +NGK M K LYVA AQ+K +R+ L+
Sbjct: 228 VAYETTEAAEAAVQALNGKDMGEGKTLYVARAQKKAERQQELK 270
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 163/295 (55%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATD-EKGHSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N++IKN D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYIKNFTDEFDDEKLKENFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV ++ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKDDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKTLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL +S +E L+K F YGTITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/387 (53%), Positives = 293/387 (75%), Gaps = 2/387 (0%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A+E LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
L ++ERD+++ ++K +TN+YVKN++ TT+E Q+ F ++G I SA + +D DGK K
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG 260
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+E +DA +AVEALN + + ++ YVG+AQKK+ER LK Q+E E K+Q
Sbjct: 261 FGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDDS+DDEKL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAIT 380
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARL 391
E N ++V KPLYVA+AQRK+ RR++L
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQL 407
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 161/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L ++ + LYD F+ G ++S ++ D +S G+G+V+F A A
Sbjct: 124 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEA 182
Query: 82 LEMLNFTPLNGKPIRVM----YSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ LN LNG+ I V RD L ++ A N+++KN++ + + F+ F
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKF 242
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG---------H 186
G I+S + D +G+ KG+GFV ++ E A KA+E LN LN +++YVG H
Sbjct: 243 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMH 302
Query: 187 FLRKQE---RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
L+KQ R ++ K + N++VKNL +S +E L++ F YGTITSA VMR +GKSK
Sbjct: 303 VLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSK 362
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 363 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 412
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 25/195 (12%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVE 261
++YV +L S +E L F G+++S V RD K+ + +VNF + + +A+E
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 262 ALNGKKFDDK----EWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
LN + W S+R+ L+ K N++IKNL I
Sbjct: 98 QLNYTPIKGRLCRIMW--------SQRDPSLR------------KKGSGNIFIKNLHPDI 137
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++ L FS FG I S K+ D +G S+G GFV F A A+ +NG ++ + +Y
Sbjct: 138 DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIY 197
Query: 378 VALAQRKEDRRARLQ 392
VA +++R ++L+
Sbjct: 198 VAPHLSRKERDSQLE 212
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ +V D +L + F G + S +V R +S G+G+V FS +EA +A+
Sbjct: 322 VNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEATKAIT 380
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 415
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/387 (53%), Positives = 293/387 (75%), Gaps = 2/387 (0%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A+E LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
L ++ERD+++ ++K +TN+YVKN++ TT+E Q+ F ++G I SA + +D DGK K
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG 260
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+E +DA +AVEALN + + ++ YVG+AQKK+ER LK Q+E E K+Q
Sbjct: 261 FGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDDS+DDEKL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAIT 380
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARL 391
E N ++V KPLYVA+AQRK+ RR++L
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQL 407
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 161/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L ++ + LYD F+ G ++S ++ D +S G+G+V+F A A
Sbjct: 124 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEA 182
Query: 82 LEMLNFTPLNGKPIRVM----YSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ LN LNG+ I V RD L ++ A N+++KN++ + + F+ F
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKF 242
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG---------H 186
G I+S + D +G+ KG+GFV ++ E A KA+E LN LN +++YVG H
Sbjct: 243 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMH 302
Query: 187 FLRKQE---RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
L+KQ R ++ K + N++VKNL +S +E L++ F YGTITSA VMR +GKSK
Sbjct: 303 VLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSK 362
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 363 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 412
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 25/195 (12%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVE 261
++YV +L S +E L F G+++S V RD K+ + +VNF + + +A+E
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 262 ALNGKKFDDK----EWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
LN + W S+R+ L+ K N++IKNL I
Sbjct: 98 QLNYTPIKGRLCRIMW--------SQRDPSLR------------KKGSGNIFIKNLHPDI 137
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++ L FS FG I S K+ D +G S+G GFV F A A+ +NG ++ + +Y
Sbjct: 138 DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIY 197
Query: 378 VALAQRKEDRRARLQ 392
VA +++R ++L+
Sbjct: 198 VAPHLSRKERDSQLE 212
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ +V D +L + F G + S +V R +S G+G+V FS +EA +A+
Sbjct: 322 VNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEATKAIT 380
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 415
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/387 (53%), Positives = 293/387 (75%), Gaps = 2/387 (0%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A+E LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
L ++ERD+++ ++K +TN+YVKN++ TT+E Q+ F ++G I SA + +D DGK K
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG 260
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+E +DA +AVEALN + + ++ YVG+AQKK+ER LK Q+E E K+Q
Sbjct: 261 FGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDDS+DDEKL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAIT 380
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARL 391
E N ++V KPLYVA+AQRK+ RR++L
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQL 407
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 161/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L ++ + LYD F+ G ++S ++ D +S G+G+V+F A A
Sbjct: 124 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEA 182
Query: 82 LEMLNFTPLNGKPIRVM----YSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ LN LNG+ I V RD L ++ A N+++KN++ + + F+ F
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKF 242
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG---------H 186
G I+S + D +G+ KG+GFV ++ E A KA+E LN LN +++YVG H
Sbjct: 243 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMH 302
Query: 187 FLRKQE---RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
L+KQ R ++ K + N++VKNL +S +E L++ F YGTITSA VMR +GKSK
Sbjct: 303 VLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSK 362
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 363 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 412
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 25/195 (12%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVE 261
++YV +L S +E L F G+++S V RD K+ + +VNF + + +A+E
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 262 ALNGKKFDDK----EWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
LN + W S+R+ L+ K N++IKNL I
Sbjct: 98 QLNYTPIKGRLCRIMW--------SQRDPSLR------------KKGSGNIFIKNLHPDI 137
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++ L FS FG I S K+ D +G S+G GFV F A A+ +NG ++ + +Y
Sbjct: 138 DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIY 197
Query: 378 VALAQRKEDRRARLQ 392
VA +++R ++L+
Sbjct: 198 VAPHLSRKERDSQLE 212
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ +V D +L + F G + S +V R +S G+G+V FS +EA +A+
Sbjct: 322 VNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEATKAIT 380
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 415
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/369 (56%), Positives = 270/369 (73%), Gaps = 1/369 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVGDL T++ LY F+++G V+S R+CRDL+TR SLGYGYVNF ++A RALE
Sbjct: 1 TSLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALE 60
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+ G+PIR+M+S RDPSLRKSG GNIFIKNLDK ID K L+DTFS G ILSCK+
Sbjct: 61 NLNYESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIGKILSCKI 120
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
A D +G SKGYGFV F+ EE A++AIEK+NGM++ND+ VYVG F+ +R + K +F
Sbjct: 121 AMDEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDRKSASGKLRFN 180
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+YVKN TT+E L+ F E+G I S V ++ +GKSK FGFV F + D A +AV +
Sbjct: 181 NIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVM 240
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF-QGANLYIKNLDDSIDDEKL 322
+GK+ + + Y +AQ+K ER+ ELK + E+ E K+ G NLY+KNLDD+IDDE+L
Sbjct: 241 HGKEINGRALYASRAQRKEERQEELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDERL 300
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K+ FS +G ITS KVM D +G S+G GFV F+ PE+A+RA+ EMN +V SKPLYVALAQ
Sbjct: 301 KEAFSHYGPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMNATLVGSKPLYVALAQ 360
Query: 383 RKEDRRARL 391
RKEDRRA+L
Sbjct: 361 RKEDRRAKL 369
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 166/297 (55%), Gaps = 24/297 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + QLYD F+ +G+++S ++ D S GYG+V+F + A RA
Sbjct: 87 GKGNIFIKNLDKTIDQKQLYDTFSFIGKILSCKIAMD-EHGNSKGYGFVHFEKEECAERA 145
Query: 82 LEMLNFTPLNGKPIRVMYSHR--DPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSA 134
+E +N +N RV+Y + S RKS +G NI++KN + L D FS
Sbjct: 146 IEKINGMMIND---RVVYVGKFIPSSDRKSASGKLRFNNIYVKNFPPDTTDEKLRDMFSE 202
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG I SC V + G+SKG+GFV F + + A++A+ ++G +N + +Y RK+ER
Sbjct: 203 FGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVMHGKEINGRALYASRAQRKEERQ 262
Query: 195 TEINK----------SKFT---NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ + SK+ N+YVKNL ++ +E L+++F YG ITSA VM D +G+
Sbjct: 263 EELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDERLKEAFSHYGPITSAKVMTDANGR 322
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
SK FGFV F + AARAV +N K YV AQ+K +R +L + +Q + +
Sbjct: 323 SKGFGFVCFTQPEQAARAVTEMNATLVGSKPLYVALAQRKEDRRAKLIAEHQQRLAQ 379
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 157/283 (55%), Gaps = 21/283 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEK 171
++++ +L L+ FS G +LS ++ DL + S GYG+V F+ + A++A+E
Sbjct: 2 SLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALEN 61
Query: 172 LNGMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
LN + ++G +R +RD + KS N+++KNL ++ ++ L +F G I
Sbjct: 62 LN------YESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIGKI 115
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S + D G SK +GFV+FE + A RA+E +NG +D+ YVGK S+R
Sbjct: 116 LSCKIAMDEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDR----- 170
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
K A+ K + N+Y+KN DEKL+ +FS FG I SC V ++P G S+G G
Sbjct: 171 -------KSASGKLRFNNIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFG 223
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
FV F P+ A +A+ M+GK + + LY + AQRKE+R+ L+
Sbjct: 224 FVCFHDPDHAEQAVRVMHGKEINGRALYASRAQRKEERQEELK 266
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/387 (53%), Positives = 293/387 (75%), Gaps = 2/387 (0%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A+E LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
L ++ERD+++ ++K +TN+YVKN++ TT+E Q+ F ++G I SA + +D DGK K
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG 260
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+E +DA +AVEALN + + ++ YVG+AQKK+ER LK Q+E E K+Q
Sbjct: 261 FGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDDS+DDEKL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAIT 380
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARL 391
E N ++V KPLYVA+AQRK+ RR++L
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQL 407
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 161/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L ++ + LYD F+ G ++S ++ D +S G+G+V+F A A
Sbjct: 124 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEA 182
Query: 82 LEMLNFTPLNGKPIRVM----YSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ LN LNG+ I V RD L ++ A N+++KN++ + + F+ F
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKF 242
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG---------H 186
G I+S + D +G+ KG+GFV ++ E A KA+E LN LN +++YVG H
Sbjct: 243 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMH 302
Query: 187 FLRKQE---RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
L+KQ R ++ K + N++VKNL +S +E L++ F YGTITSA VMR +GKSK
Sbjct: 303 VLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSK 362
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 363 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 412
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 25/195 (12%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVE 261
++YV +L S +E L F G+++S V RD K+ + +VNF + + +A+E
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 262 ALNGKKFDDK----EWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
LN + W S+R+ L+ K N++IKNL I
Sbjct: 98 QLNYTPIKGRLCRIMW--------SQRDPSLR------------KKGSGNIFIKNLHPDI 137
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++ L FS FG I S K+ D +G S+G GFV F A A+ +NG ++ + +Y
Sbjct: 138 DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIY 197
Query: 378 VALAQRKEDRRARLQ 392
VA +++R ++L+
Sbjct: 198 VAPHLSRKERDSQLE 212
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ +V D +L + F G + S +V R +S G+G+V FS +EA +A+
Sbjct: 322 VNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEATKAIT 380
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 415
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 210/380 (55%), Positives = 286/380 (75%), Gaps = 4/380 (1%)
Query: 16 ANANQFGTTS--LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
AN + TTS LYVG+L+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF+
Sbjct: 40 ANNSNVDTTSASLYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFN 99
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
+ + A+E LN++P+ GKP R+M+S RDP+LRK GAGNIFIKNL ID+KALHDTFS
Sbjct: 100 DHESGRTAIEKLNYSPIKGKPCRIMWSQRDPALRKKGAGNIFIKNLHPDIDNKALHDTFS 159
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FGNILSCK+ATD G+SKG+GFV F+ + +A +A++ +NGM+LN ++VYV + K++R
Sbjct: 160 VFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREVYVAQHVSKKDR 219
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
++++ K+ FTNVYVKN+ T E++ F +YG ITS + +D +GK + FGF+NFE
Sbjct: 220 ESKLEEVKANFTNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFE 279
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N DDAA+AVE LN +F ++ YVG+AQKK ER ELK Q+E + E K+QG NL++K
Sbjct: 280 NHDDAAKAVEELNDLEFKGQKLYVGRAQKKYERLQELKKQYEASRLEKLAKYQGVNLFVK 339
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDDSIDDEKL+ F+PFGSITS KVMR+ G S+ GFV FSTPEEA++A+ E N ++V
Sbjct: 340 NLDDSIDDEKLEAEFAPFGSITSAKVMRNEEGKSKNFGFVCFSTPEEATKAITEKNQQIV 399
Query: 372 VSKPLYVALAQRKEDRRARL 391
KPLYVA+AQRK+ RR++L
Sbjct: 400 AGKPLYVAIAQRKDVRRSQL 419
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 157/290 (54%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L ++ + L+D F+ G ++S ++ D T +S G+G+V+F A A
Sbjct: 136 GAGNIFIKNLHPDIDNKALHDTFSVFGNILSCKIATD-ETGKSKGFGFVHFEEDNAAVEA 194
Query: 82 LEMLNFTPLNGKPI----RVMYSHRDPSLR--KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNG+ + V R+ L K+ N+++KN+D FS +
Sbjct: 195 VDAINGMMLNGREVYVAQHVSKKDRESKLEEVKANFTNVYVKNVDVDTPEDEFTALFSKY 254
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + D G+ +G+GF+ F+N + A KA+E+LN + +++YVG +K ER
Sbjct: 255 GPITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEELNDLEFKGQKLYVGRAQKKYERLQ 314
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K +K+ N++VKNL +S +E L+ F +G+ITSA VMR+ +GKSK
Sbjct: 315 ELKKQYEASRLEKLAKYQGVNLFVKNLDDSIDDEKLEAEFAPFGSITSAKVMRNEEGKSK 374
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 375 NFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 424
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 103/328 (31%), Positives = 162/328 (49%), Gaps = 25/328 (7%)
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN---------IFIKNLDKAIDH 125
A + LE LN G P + P+ ++ A N +++ LD ++
Sbjct: 5 ADKTVEQLEKLNINETEGAPA-ASETEGTPAASETEANNSNVDTTSASLYVGELDPSVSE 63
Query: 126 KALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
L+D FS G + S +V D + S GY +V F++ ES + AIEKLN + K +
Sbjct: 64 ALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGRTAIEKLNYSPIKGKPCRI 123
Query: 185 GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+RD + K N+++KNL + L +F +G I S + D GKSK
Sbjct: 124 ----MWSQRDPALRKKGAGNIFIKNLHPDIDNKALHDTFSVFGNILSCKIATDETGKSKG 179
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFV+FE + A AV+A+NG + +E YV + K +RE +L+ E F
Sbjct: 180 FGFVHFEEDNAAVEAVDAINGMMLNGREVYVAQHVSKKDRESKLE--------EVKANF- 230
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
N+Y+KN+D +++ LFS +G ITS + +D G RG GF+ F ++A++A+
Sbjct: 231 -TNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAKAVE 289
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQ 392
E+N + LYV AQ+K +R L+
Sbjct: 290 ELNDLEFKGQKLYVGRAQKKYERLQELK 317
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ ++ D +L F G + S +V R+ +S +G+V FS +EA +A+
Sbjct: 334 VNLFVKNLDDSIDDEKLEAEFAPFGSITSAKVMRN-EEGKSKNFGFVCFSTPEEATKAIT 392
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 393 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 427
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/384 (53%), Positives = 286/384 (74%), Gaps = 9/384 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N G G + SLY+GDL +VT++ LY+ F+ G ++S+RVCRD++TRRSL Y Y
Sbjct: 2 NATGAG-----YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD++ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D +G S+GYGFV F+ E+A +AI+ +NGMLLND++V+VGHF
Sbjct: 117 DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN E ++ L++ F +G S VM D G+S+ FGF
Sbjct: 176 RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VN+ N ++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG N
Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDD++L++ F P+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARL 391
G++V +KPLYVALAQRKE+R+A L
Sbjct: 355 GRIVSTKPLYVALAQRKEERKAIL 378
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 174/294 (59%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D R GYG+V+F + A RA
Sbjct: 97 GVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETHEAANRA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSA 134
++ +N LN + + V + S R+ L + GA N++IKN + +D K L + FSA
Sbjct: 155 IQTMNGMLLNDRKVFVGHFKSRREREL-EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSA 213
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FGN LS KV D +G+S+G+GFV + N E AQKA+ ++NG +N + +YVG ++ ER
Sbjct: 214 FGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQ 273
Query: 195 TE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
+E IN+ + N+YVKNL + ++ L+K F YGTITSA VM +G G S
Sbjct: 274 SELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 166/292 (56%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ +GAG +++I +L + L++ FS G I+S +V D+ +S Y ++ F
Sbjct: 1 MNATGAGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS NV++KNL ES + L
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDESIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ +GFV+FE + A RA++ +NG +D++ +VG +
Sbjct: 117 DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERELE A + N+YIKN + +DD++L+++FS FG+ S KVM D
Sbjct: 176 RRERELEY----------GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SRG GFV + EEA +A+ EMNGK V + +YV AQ++ +R++ L+
Sbjct: 226 DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELK 277
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/373 (55%), Positives = 281/373 (75%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AI+K+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAYL 378
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 172/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNG+ + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E L+K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 165/298 (55%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ DL S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + KS N++VKNL +S + L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ Q +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S ++ RD I+ GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--LITSGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F ++A AL MN ++ KP+ + +QR R
Sbjct: 59 FQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/375 (58%), Positives = 279/375 (74%), Gaps = 6/375 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL +V ++QL+ +F+Q+ +VSVRVCRD+ + SLGYGYVNF + QEA ALE
Sbjct: 37 SSLYVGDLAESVDETQLHAVFSQVAPLVSVRVCRDIVSGVSLGYGYVNFYSRQEATCALE 96
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF PL+GK IRVM+S+RDPSLRKSG N+F+KNL+ +ID K L++ FS+FG ILSCKV
Sbjct: 97 ALNFAPLSGKHIRVMFSNRDPSLRKSGRANLFVKNLEPSIDSKNLYEMFSSFGTILSCKV 156
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
ATD GQSKGYGFVQ++ EESAQ AI +LNGML ND++++VG +R++ R+ KFT
Sbjct: 157 ATDSAGQSKGYGFVQYETEESAQDAINRLNGMLANDREMFVGLHMRRRNREV-----KFT 211
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVY+KNL +++DL++ F +G ITSAVVMRD +G SKCFGFVNFE + A AV+
Sbjct: 212 NVYIKNLPTEFSDDDLRQEFAPFGEITSAVVMRDVNGVSKCFGFVNFEKPEFALEAVKKA 271
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE-AADKFQGANLYIKNLDDSIDDEKL 322
NGK +DK YVG+AQKK+ER+ ELK +F+Q ++ DK G NLY+KN+DDSI+DE L
Sbjct: 272 NGKVINDKTLYVGRAQKKAERQAELKTKFKQEDRDKKVDKPNGINLYLKNIDDSINDEGL 331
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K LF FG +TSCKVM D G S+GSGFV F+T E A+ MNG++V KPLYV LAQ
Sbjct: 332 KILFEEFGQVTSCKVMVDAQGRSKGSGFVLFATAEAGHSAINGMNGRIVGKKPLYVGLAQ 391
Query: 383 RKEDRRARLQVCLLQ 397
KE+RRA L Q
Sbjct: 392 PKEERRAMLMAHFAQ 406
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 158/299 (52%), Gaps = 18/299 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L+V +LE ++ LY++F+ G ++S +V D S +S GYG+V + + A A
Sbjct: 123 GRANLFVKNLEPSIDSKNLYEMFSSFGTILSCKVATD-SAGQSKGYGFVQYETEESAQDA 181
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LN N + + V R + R+ N++IKNL L F+ FG I S
Sbjct: 182 INRLNGMLANDREMFVGLHMRRRN-REVKFTNVYIKNLPTEFSDDDLRQEFAPFGEITSA 240
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
V D+NG SK +GFV F+ E A +A++K NG ++NDK +YVG +K ER E+ K+K
Sbjct: 241 VVMRDVNGVSKCFGFVNFEKPEFALEAVKKANGKVINDKTLYVGRAQKKAERQAEL-KTK 299
Query: 202 F--------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
F N+Y+KN+ +S +E L+ F E+G +TS VM D G+SK GF
Sbjct: 300 FKQEDRDKKVDKPNGINLYLKNIDDSINDEGLKILFEEFGQVTSCKVMVDAQGRSKGSGF 359
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ-NMKEAADKFQG 305
V F ++ A+ +NG+ K YVG AQ K ER L F Q N+ AA + G
Sbjct: 360 VLFATAEAGHSAINGMNGRIVGKKPLYVGLAQPKEERRAMLMAHFAQRNLAMAASPYAG 418
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/384 (53%), Positives = 286/384 (74%), Gaps = 9/384 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N G G + SLY+GDL +VT++ LY+ F+ G ++S+RVCRD++TRRSL Y Y
Sbjct: 2 NATGAG-----YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD++ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D +G S+GYGFV F+ E+A +AI+ +NGMLLND++V+VGHF
Sbjct: 117 DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN E ++ L++ F +G S VM D G+S+ FGF
Sbjct: 176 RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VN+ N ++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG N
Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDD++L++ F P+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARL 391
G++V +KPLYVALAQRKE+R+A L
Sbjct: 355 GRIVSTKPLYVALAQRKEERKAIL 378
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 174/294 (59%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D R GYG+V+F + A RA
Sbjct: 97 GVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETHEAANRA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSA 134
++ +N LN + + V + S R+ L + GA N++IKN + +D K L + FSA
Sbjct: 155 IQTMNGMLLNDRKVFVGHFKSRREREL-EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSA 213
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FGN LS KV D +G+S+G+GFV + N E AQKA+ ++NG +N + +YVG ++ ER
Sbjct: 214 FGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQ 273
Query: 195 TE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
+E IN+ + N+YVKNL + ++ L+K F YGTITSA VM +G G S
Sbjct: 274 SELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 166/292 (56%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ +GAG +++I +L + L++ FS G I+S +V D+ +S Y ++ F
Sbjct: 1 MNATGAGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS NV++KNL ES + L
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDESIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ +GFV+FE + A RA++ +NG +D++ +VG +
Sbjct: 117 DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERELE A + N+YIKN + +DD++L+++FS FG+ S KVM D
Sbjct: 176 RRERELEY----------GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SRG GFV + EEA +A+ EMNGK V + +YV AQ++ +R++ L+
Sbjct: 226 DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELK 277
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/379 (56%), Positives = 285/379 (75%), Gaps = 7/379 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA-- 75
+ +SLYVGDLE +VT++QL++LF+ +G V S+RVCRD TRRSLGY YVN+++A
Sbjct: 17 STPLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALD 76
Query: 76 -QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
Q A RA+E LN+ +NGKP+R+M+SHRDPS RKSG GNIFIKNLDK ID KALHDTFSA
Sbjct: 77 PQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSA 136
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG ILSCKVATD NG SKGYGFV F+++ +A +AI+ +N + K VYVG F ++ +R
Sbjct: 137 FGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRP 196
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
++ +TNV+VKNL +++L K E+G ITSAVVM+D G SK FGF+NF++++
Sbjct: 197 QDV----YTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAE 252
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
AA+ VE LN ++ K Y G+AQKK+ERE L+ + E++ +E K+QG NLY+KNL
Sbjct: 253 SAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQGMNLYVKNLS 312
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D +DD+ L++LF+ G+ITSCKVM+D SG S+G GFV F++ +EA+RA+ EMNGKMV K
Sbjct: 313 DEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGK 372
Query: 375 PLYVALAQRKEDRRARLQV 393
PLYVALAQRK+ RRA+L+
Sbjct: 373 PLYVALAQRKDVRRAQLEA 391
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 154/292 (52%), Gaps = 13/292 (4%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + G ++++ +L+ + L+D F+ G+++S +V D + S GYG+V+F +
Sbjct: 107 SARKSGVGNIFIKNLDKTIDAKALHDTFSAFGKILSCKVATD-ANGVSKGYGFVHFEDQA 165
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
A RA++ +N + GK + V + + N+F+KNL I L + G
Sbjct: 166 AADRAIQTVNQKEIEGKIVYVGPFQKRADRPQDVYTNVFVKNLPADIGDDELGKMATEHG 225
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I S V D G SKG+GF+ F + ESA K +E LN ++ K +Y G +K ER+
Sbjct: 226 EITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAM 285
Query: 197 IN------------KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ K + N+YVKNLS+ ++ L++ F GTITS VM+DG GKSK
Sbjct: 286 LRQKAEESKQERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKDGSGKSKG 345
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + D+A RAV +NGK K YV AQ+K R +L+ + M
Sbjct: 346 FGFVCFTSHDEATRAVTEMNGKMVKGKPLYVALAQRKDVRRAQLEANMQARM 397
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAF 353
+ A+ ++LY+ +L+ + + +L +LFS G + S +V RD ++R G +V +
Sbjct: 14 QPASTPLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRD--AVTRRSLGYAYVNY 71
Query: 354 ST---PEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
++ P+ A RA+ +N +V KP+ + + R R
Sbjct: 72 NSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSAR 109
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/373 (55%), Positives = 281/373 (75%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AI+K+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAYL 378
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 172/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNG+ + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E L+K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 165/298 (55%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ DL S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + KS N++VKNL +S + L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ Q +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S ++ RD I+ GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--LITSGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F ++A AL MN ++ KP+ + +QR R
Sbjct: 59 FQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/373 (55%), Positives = 281/373 (75%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AI+K+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAYL 378
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 172/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNG+ + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E L+K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 165/298 (55%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ DL S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + KS N++VKNL +S + L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ Q +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S ++ RD I+ GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--LITSGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F ++A AL MN ++ KP+ + +QR R
Sbjct: 59 FQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/448 (48%), Positives = 299/448 (66%), Gaps = 58/448 (12%)
Query: 6 AQGQNVNGGG-----ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
AQG N + G A + + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD
Sbjct: 41 AQGDNADAAGPTPGSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAV 100
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
TRRSLGY YVN++ + +ALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD
Sbjct: 101 TRRSLGYAYVNYNTTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLD 160
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
AID+KALHDTF+AFGNILSCKVA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K
Sbjct: 161 VAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEK 220
Query: 181 QVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
+VYVGH + K++R ++ K+ FTN+YVKN++ T+++ + F +G +TS+ + RD
Sbjct: 221 KVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQ 280
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+GKS+ FGFVNF + AA+AV+ LNGK F ++ YVG+AQKK ERE EL+ +E E
Sbjct: 281 EGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARME 340
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD------------------ 340
A K+QG NLYIKNLDD +DDEKL+QLF+ FG ITS KVMRD
Sbjct: 341 KASKYQGVNLYIKNLDDEVDDEKLRQLFADFGPITSAKVMRDNATESGNEDEGSSDDKEN 400
Query: 341 ---------------------------------PSGISRGSGFVAFSTPEEASRALLEMN 367
P G S+G GFV FS P++A++A+ EMN
Sbjct: 401 EPKKEEGEEKAEEAKSEDKEDADKKADKKSDKKPHGKSKGFGFVCFSNPDDATKAVAEMN 460
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQVCL 395
+MV KPLYVALAQRK+ R+++L+ +
Sbjct: 461 QRMVNGKPLYVALAQRKDVRKSQLEASI 488
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/373 (55%), Positives = 281/373 (75%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AI+K+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAYL 378
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 172/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNG+ + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E L+K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 165/298 (55%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ DL S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + KS N++VKNL +S + L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ Q +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S ++ RD I+ GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--LITSGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F ++A AL MN ++ KP+ + +QR R
Sbjct: 59 FQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/370 (58%), Positives = 281/370 (75%), Gaps = 3/370 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V +S L+D F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLD+AID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV FE ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ ++ + G NLY+KNLDD+IDD++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ FSP+G+ITS KVM D G S+G GFV F+ EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 363 QRKEERKAHL 372
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 158/283 (55%), Gaps = 16/283 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + ++ L D FS+ G +LS +V D + +S GY +V F A++A++
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N L+ +K + + +RD + +S NV++KNL + + + +F +G I
Sbjct: 62 TMNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 118 SCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GF
Sbjct: 177 -------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 351 VAFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQ 392
VAF T E A A+ +NGK M K LYVA AQ+K +R+ L+
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELK 270
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 162/295 (54%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV F+ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ ++ L+ +F YG ITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + +A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/387 (53%), Positives = 293/387 (75%), Gaps = 2/387 (0%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A+E LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
L ++ERD+++ ++K +TN+YVKN++ TT+E Q+ F ++G I SA + +D DGK K
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG 260
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+E +DA +AVEALN + + ++ YVG+AQKK+ER LK Q+E E K+Q
Sbjct: 261 FGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDDS+DDEKL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAIT 380
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARL 391
E N ++V KPLYVA+AQRK+ RR++L
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQL 407
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 161/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L ++ + LYD F+ G ++S ++ D +S G+G+V+F A A
Sbjct: 124 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEA 182
Query: 82 LEMLNFTPLNGKPIRVM----YSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ LN LNG+ I V RD L ++ A N+++KN++ + + F+ F
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKF 242
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG---------H 186
G I+S + D +G+ KG+GFV ++ E A KA+E LN LN +++YVG H
Sbjct: 243 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMH 302
Query: 187 FLRKQE---RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
L+KQ R ++ K + N++VKNL +S +E L++ F YGTITSA VMR +GKSK
Sbjct: 303 VLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSK 362
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 363 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 412
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 17/191 (8%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVE 261
++YV +L S +E L F G+++S V RD K+ + +VNF + + +A+E
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN + + S+R+ L+ K N++IKNL ID++
Sbjct: 98 QLNYTPIKGRLCRI----MWSQRDPSLR------------KKGSGNIFIKNLHPDIDNKA 141
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L FS FG I S K+ D +G S+G GFV F A A+ +NG ++ + +YVA
Sbjct: 142 LYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPH 201
Query: 382 QRKEDRRARLQ 392
+++R ++L+
Sbjct: 202 LSRKERDSQLE 212
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ +V D +L + F G + S +V R +S G+G+V FS +EA +A+
Sbjct: 322 VNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEATKAIT 380
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 415
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 210/370 (56%), Positives = 287/370 (77%), Gaps = 4/370 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ L++ F+ +G ++S+RVCR + TR SLGY YVNF N +A RAL+
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF L G P+R+M+S RDPSLRKSG GN+FIKNLD++ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDILKGHPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--F 202
D G SKGYGFV F+ ++SA ++IEK+NGMLLN K+V+VG F+ + +R+ E+ + +
Sbjct: 123 QDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQRAKLY 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN+ E+ E++L + F +YGTITS VM DG S+ FGFV FE+ +A +AV
Sbjct: 183 TNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTE 242
Query: 263 LNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+GKK + K +YV +AQKK+ER+ ELK +FEQ E +++QG NLY+KNLDD+IDDE+
Sbjct: 243 LHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS FG+I S KVM D G S+G GFV FS+PEEA++A+ +MNG++V +KPLYV LA
Sbjct: 303 LRREFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLA 361
Query: 382 QRKEDRRARL 391
QRK+DR+A L
Sbjct: 362 QRKKDRKAHL 371
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 169/292 (57%), Gaps = 21/292 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S +V +D T S GYG+V+F Q A ++
Sbjct: 88 GVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQD-ETGNSKGYGFVHFETKQSATQS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R+ ++ G N++IKN+D+ ++ K L + F +
Sbjct: 147 IEKVNGMLLNGKKVFVGRFVGRNDREKELGQRAKLYTNVYIKNIDENVNEKELFEMFKKY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I SCKV +G S+G+GFV F++ + A+KA+ +L+G + K YV +K ER
Sbjct: 207 GTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQ 266
Query: 195 TE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E IN+ + N+YVKNL ++ +E L++ F +GTI SA VM D DG+S
Sbjct: 267 QELKRKFEQYKIERINRYQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMD-DGRS 325
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
K FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q
Sbjct: 326 KGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRKKDRKAHLDSQYSQ 377
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FS G+I S +V R + S G +V F +A RAL
Sbjct: 2 ASLYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALD 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
MN ++ P+ + +QR R
Sbjct: 62 TMNFDILKGHPMRIMWSQRDPSLR 85
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/380 (56%), Positives = 285/380 (75%), Gaps = 5/380 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+ G ++S+RVCRD+ TRRSLGY YVNF +A R
Sbjct: 8 YPMASLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++DTFSAFG+ILS
Sbjct: 68 ALDSMNFDVIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGDILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F EE+A K+IEK+NGMLLN K+VYVG F+ ++ER +
Sbjct: 128 CKVVCDENG-SKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFMSRKERYDAMGGQ 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR-DGDGKSKCFGFVNFENSDDAA 257
+ KFTNV+VKN + +E L++ F YG I S VM+ D G++K FGFV FE+ DA
Sbjct: 187 QKKFTNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAE 246
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
A + LN K + + YVG+AQKK ER+ EL+++FE E A+++QG NLY+KNLDDS+
Sbjct: 247 NACDDLNMKDINGRILYVGRAQKKIERQAELRNRFELMKAERANRYQGVNLYVKNLDDSL 306
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ F PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLY
Sbjct: 307 DDERLRKEFMPFGTITSAKVMSE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 365
Query: 378 VALAQRKEDRRARLQVCLLQ 397
VALAQRKEDR+A L +Q
Sbjct: 366 VALAQRKEDRKAHLASQFMQ 385
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 166/294 (56%), Gaps = 22/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S +V D + S GYG+V+F+ + A ++
Sbjct: 97 GVGNVFIKNLDKSIDNKAMYDTFSAFGDILSCKVVCDENG--SKGYGFVHFATEEAANKS 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R G N+F+KN +D + L + F +
Sbjct: 155 IEKVNGMLLNGKKVYVGKFMSRKERYDAMGGQQKKFTNVFVKNFGDELDDEGLREMFERY 214
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I+S KV D +G++KG+GFV F++ A+ A + LN +N + +YVG +K ER
Sbjct: 215 GKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDLNMKDINGRILYVGRAQKKIERQ 274
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM +G G+S
Sbjct: 275 AELRNRFELMKAERANRYQGVNLYVKNLDDSLDDERLRKEFMPFGTITSAKVMSEG-GRS 333
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L QF Q M
Sbjct: 334 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEDRKAHLASQFMQRM 387
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 159/292 (54%), Gaps = 17/292 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L + FS+ G ILS +V D+ +S GY +V F
Sbjct: 2 NPSGPSYPMASLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + + + +RD + KS NV++KNL +S + +
Sbjct: 62 PADAERALDSMNFDVIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+F + A +++E +NG + K+ YVGK +
Sbjct: 118 TFSAFGDILSCKVVCDENG-SKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFMSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR-D 340
ER + Q KF N+++KN D +DDE L+++F +G I S KVM+ D
Sbjct: 177 KERYDAMGGQ--------QKKF--TNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDD 226
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG ++G GFV F P +A A ++N K + + LYV AQ+K +R+A L+
Sbjct: 227 HSGRNKGFGFVCFEDPIDAENACDDLNMKDINGRILYVGRAQKKIERQAELR 278
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
AN++ +LYV +L+ ++ D +L F G + S +V + RS G+G+V FS+ +E
Sbjct: 289 ANRYQGVNLYVKNLDDSLDDERLRKEFMPFGTITSAKVMSEGG--RSKGFGFVCFSSPEE 346
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A +A+ +N ++ KP+ V + R
Sbjct: 347 ATKAVTEMNGRIVSTKPLYVALAQR 371
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/433 (49%), Positives = 290/433 (66%), Gaps = 53/433 (12%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A +Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN+++
Sbjct: 34 ATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDT 93
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
RAL+ LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 94 AHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 153
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R +
Sbjct: 154 GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 213
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+Y+KN+ +E+ +K F ++G ITSA + RD +GKS+ FGFVNF
Sbjct: 214 KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTH 273
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 274 ESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNL 333
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD--------------------------------- 340
D +DD+KL++LF P+G+ITS KVMRD
Sbjct: 334 TDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAA 393
Query: 341 ------------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQ
Sbjct: 394 EEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 453
Query: 383 RKEDRRARLQVCL 395
RK+ RR++L+ +
Sbjct: 454 RKDVRRSQLEASI 466
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 167/314 (53%), Gaps = 21/314 (6%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E N TP N V + + + ++++ LD ++ L++ FS+ G + S +
Sbjct: 13 ENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 72
Query: 143 VATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
V D + +S GY +V +++ ++A+++LN L+ K + +RD + K+
Sbjct: 73 VCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTG 128
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
NV++KNL + + L +F +G I S V +D G SK +GFV++E ++ A A++
Sbjct: 129 QGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Query: 262 ALNGKKFDDKEWYVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
+NG +DK+ +VG K +R+ E+K F N+YIKN+D ++
Sbjct: 189 HVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDPEVE 235
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+ ++LF FG ITS + RD G SRG GFV FST E A A+ EMN K V S+ LYV
Sbjct: 236 DEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Query: 379 ALAQRKEDRRARLQ 392
AQ+K +R L+
Sbjct: 296 GRAQKKHEREEELR 309
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER--ELELKHQFEQNMK 297
GKSK FGFV F + D+A++AV +N + + K YV AQ+K R +LE Q N++
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIR 473
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/369 (56%), Positives = 274/369 (74%), Gaps = 1/369 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL V+DS L F+++G V+S RVCRDL+TR SLGYGYVNF + + A +ALE
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+LN+ L G+PIR+M+S RDPSLRKSG GNIFIKNLDK+I+ K L+DTFS FG ILSCK+
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKI 132
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
D NGQSKGYGFV F+ EE A++AIEK+N M++ D+ VYVG F+ K ER ++ K KF
Sbjct: 133 VMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN 192
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+Y+KN T E L++ F E+G I SA VM+D +GKSK FGFV F + D A AV+ +
Sbjct: 193 NLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTM 252
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ-GANLYIKNLDDSIDDEKL 322
+GK+ + + Y +AQ+K ER+ ELK + E+ E + NLY+KNLDD+IDD++L
Sbjct: 253 HGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS GSITS KVM+D + S+G GFV F+ PE+A+RA+ +MNG ++ SKPLYVALAQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 383 RKEDRRARL 391
RKEDRRA+L
Sbjct: 373 RKEDRRAKL 381
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 159/281 (56%), Gaps = 17/281 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + AL FS G +LS +V DL S GYG+V F++ + A++A+E
Sbjct: 14 SLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEV 73
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L + + + +RD + KS N+++KNL +S +++L +F +G I S
Sbjct: 74 LNYESLMGRPIRI----MWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
++ D +G+SK +GFV+FE + A RA+E +N D+ YVGK K+ER
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTER------- 182
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
K A K + NLYIKN D+EKLK++F+ FG I S VM+D G S+G GFV
Sbjct: 183 -----KSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F P+ A A+ M+GK + + LY A AQRKE+R+ L+
Sbjct: 238 CFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELK 278
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 165/297 (55%), Gaps = 24/297 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ +LYD F+ G+++S ++ D +S GYG+V+F + A RA
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERA 157
Query: 82 LEMLNFTPLNGKPIRVMY-------SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+E +N + RV+Y + R RK N++IKN D++ L + F+
Sbjct: 158 IEKINNMIIRD---RVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNE 214
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG I S V D G+SKG+GFV F + + A+ A++ ++G + + +Y RK+ER
Sbjct: 215 FGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQ 274
Query: 195 TEINK----------SKF---TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ + S + N+YVKNL ++ ++ L+++F +G+ITSA VM+D + +
Sbjct: 275 EELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNR 334
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
SK FGFV F N + AARAV +NG K YV AQ+K +R +L + +Q M +
Sbjct: 335 SKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRMAQ 391
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 285/372 (76%), Gaps = 2/372 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 66 SASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAI 125
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFSAFG ILS K
Sbjct: 126 EELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVK 185
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD GQSK +GFV ++ EE+AQ AIE +NGMLLND++VYVG + K++R++++ K+
Sbjct: 186 VATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKA 245
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TN+YVKN+ + TE++ ++ F +G ITS + +D +GKSK FGFVNFE + AA+AV
Sbjct: 246 NYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAV 305
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLD+ ID E
Sbjct: 306 EELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSE 365
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFG+ITS KVM D +G S+G GFV FSTPEEA++A+ EMN +MV KPLYVAL
Sbjct: 366 KLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVAL 425
Query: 381 AQRKEDRRARLQ 392
AQRK+ RR++L+
Sbjct: 426 AQRKDVRRSQLE 437
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 165/296 (55%), Gaps = 19/296 (6%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + G ++++ +L + + L+D F+ G+++SV+V D +S +G+V++
Sbjct: 147 PSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETE 205
Query: 76 QEAARALEMLNFTPLNGKPI----RVMYSHRDPSLR--KSGAGNIFIKNLDKAIDHKALH 129
+ A A+E +N LN + + V R+ L K+ NI++KN+D A K
Sbjct: 206 EAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFE 265
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
+ F+ FG I S + D G+SKG+GFV F+ E+A KA+E+LN +N +++YVG +
Sbjct: 266 ELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQK 325
Query: 190 KQERDTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K+ER E+ K SK+ N++VKNL E E L++ F +GTITS+ VM D
Sbjct: 326 KRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD 385
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
GKSK FGFV F ++A +A+ +N + + K YV AQ+K R +L+ Q +
Sbjct: 386 DAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQ 441
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/369 (56%), Positives = 274/369 (74%), Gaps = 1/369 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL V+DS L F+++G V+S RVCRDL+TR SLGYGYVNF + + A +ALE
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+LN+ L G+PIR+M+S RDPSLRKSG GNIFIKNLDK+I+ K L+DTFS FG ILSCK+
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKI 132
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
D NGQSKGYGFV F+ EE A++AIEK+N M++ D+ VYVG F+ K ER ++ K KF
Sbjct: 133 VMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN 192
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+Y+KN T E L++ F E+G I SA VM+D +GKSK FGFV F + D A AV+ +
Sbjct: 193 NLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTM 252
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ-GANLYIKNLDDSIDDEKL 322
+GK+ + + Y +AQ+K ER+ ELK + E+ E + NLY+KNLDD+IDD++L
Sbjct: 253 HGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS GSITS KVM+D + S+G GFV F+ PE+A+RA+ +MNG ++ SKPLYVALAQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 383 RKEDRRARL 391
RKEDRRA+L
Sbjct: 373 RKEDRRAKL 381
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 159/281 (56%), Gaps = 17/281 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + AL FS G +LS +V DL S GYG+V F++ + A++A+E
Sbjct: 14 SLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEV 73
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L + + + +RD + KS N+++KNL +S +++L +F +G I S
Sbjct: 74 LNYESLMGRPIRI----MWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
++ D +G+SK +GFV+FE + A RA+E +N D+ YVGK K+ER
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTER------- 182
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
K A K + NLYIKN D+EKLK++F+ FG I S VM+D G S+G GFV
Sbjct: 183 -----KSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F P+ A A+ M+GK + + LY A AQRKE+R+ L+
Sbjct: 238 CFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELK 278
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 165/297 (55%), Gaps = 24/297 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ +LYD F+ G+++S ++ D +S GYG+V+F + A RA
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERA 157
Query: 82 LEMLNFTPLNGKPIRVMY-------SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+E +N + RV+Y + R RK N++IKN D++ L + F+
Sbjct: 158 IEKINNMIIRD---RVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNE 214
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG I S V D G+SKG+GFV F + + A+ A++ ++G + + +Y RK+ER
Sbjct: 215 FGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQ 274
Query: 195 TEINK----------SKF---TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ + S + N+YVKNL ++ ++ L+++F +G+ITSA VM+D + +
Sbjct: 275 EELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNR 334
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
SK FGFV F N + AARAV +NG K YV AQ+K +R +L + +Q M +
Sbjct: 335 SKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRMAQ 391
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/369 (56%), Positives = 274/369 (74%), Gaps = 1/369 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL V+DS L F+++G V+S RVCRDL+TR SLGYGYVNF + + A +ALE
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+LN+ L G+PIR+M+S RDPSLRKSG GNIFIKNLDK+I+ K L+DTFS FG ILSCK+
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKI 132
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
D NGQSKGYGFV F+ EE A++AIEK+N M++ D+ VYVG F+ K ER ++ K KF
Sbjct: 133 VMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN 192
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+Y+KN T E L++ F E+G I SA VM+D +GKSK FGFV F + D A AV+ +
Sbjct: 193 NLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTM 252
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ-GANLYIKNLDDSIDDEKL 322
+GK+ + + Y +AQ+K ER+ ELK + E+ E + NLY+KNLDD+IDD++L
Sbjct: 253 HGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS GSITS KVM+D + S+G GFV F+ PE+A+RA+ +MNG ++ SKPLYVALAQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 383 RKEDRRARL 391
RKEDRRA+L
Sbjct: 373 RKEDRRAKL 381
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 159/281 (56%), Gaps = 17/281 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + AL FS G +LS +V DL S GYG+V F++ + A++A+E
Sbjct: 14 SLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEV 73
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L + + + +RD + KS N+++KNL +S +++L +F +G I S
Sbjct: 74 LNYESLMGRPIRI----MWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
++ D +G+SK +GFV+FE + A RA+E +N D+ YVGK K+ER
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTER------- 182
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
K A K + NLYIKN D+EKLK++F+ FG I S VM+D G S+G GFV
Sbjct: 183 -----KSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F P+ A A+ M+GK + + LY A AQRKE+R+ L+
Sbjct: 238 CFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELK 278
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 165/297 (55%), Gaps = 24/297 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ +LYD F+ G+++S ++ D +S GYG+V+F + A RA
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERA 157
Query: 82 LEMLNFTPLNGKPIRVMY-------SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+E +N + RV+Y + R RK N++IKN D++ L + F+
Sbjct: 158 IEKINNMIIRD---RVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNE 214
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG I S V D G+SKG+GFV F + + A+ A++ ++G + + +Y RK+ER
Sbjct: 215 FGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQ 274
Query: 195 TEINK----------SKF---TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ + S + N+YVKNL ++ ++ L+++F +G+ITSA VM+D + +
Sbjct: 275 EELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNR 334
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
SK FGFV F N + AARAV +NG K YV AQ+K +R +L + +Q M +
Sbjct: 335 SKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRMAQ 391
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/379 (55%), Positives = 286/379 (75%), Gaps = 3/379 (0%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+Q G V+S+RVCRDL TRRSLGY YVNF +A R
Sbjct: 8 YPIASLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
A++ +N+ P+ G+P R+M+S RDP+LR+SG GNIFIKNLDK ID+K L+D FSAFGNILS
Sbjct: 68 AIDTMNYDPIKGRPCRIMWSQRDPTLRRSGVGNIFIKNLDKNIDNKGLYDAFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CK+A D S+GYGFV ++ +E+A +AI K+NGM+LNDK+V+VG F+ K+ER ++
Sbjct: 128 CKIAVDSKNVSRGYGFVHYETKEAAHEAIAKVNGMMLNDKKVFVGEFMSKRERLEKLGDQ 187
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
KF NV+VKN +S EE L++ FG++G ITS VVM + GKSK FGFV FE + A
Sbjct: 188 AKKFKNVFVKNFGDSLDEEKLKEMFGKHGEITSCVVMAE-SGKSKGFGFVAFEAPEAAEA 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV LNG + + ++ V +AQKK+ER +ELK +FE E +++QG NLYIKNL+D +D
Sbjct: 247 AVNELNGLEIEGRKLVVCRAQKKAERTMELKSRFEAQKMERINRYQGVNLYIKNLEDGLD 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L+ FS +G+ITS KVM+D GIS+G GFV FS+P+EA++A+ EMNG+++V+KPLYV
Sbjct: 307 DERLRSEFSTYGTITSAKVMKDEKGISKGFGFVCFSSPDEATKAVTEMNGRILVTKPLYV 366
Query: 379 ALAQRKEDRRARLQVCLLQ 397
ALAQRKE+RRA+L LQ
Sbjct: 367 ALAQRKEERRAQLSTQFLQ 385
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 163/294 (55%), Gaps = 22/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + LYD F+ G ++S ++ D S S GYG+V++ + A A
Sbjct: 97 GVGNIFIKNLDKNIDNKGLYDAFSAFGNILSCKIAVD-SKNVSRGYGFVHYETKEAAHEA 155
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSA 134
+ +N LN K + V S R+ L K G N+F+KN ++D + L + F
Sbjct: 156 IAKVNGMMLNDKKVFVGEFMSKRE-RLEKLGDQAKKFKNVFVKNFGDSLDEEKLKEMFGK 214
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I SC V + +G+SKG+GFV F+ E+A+ A+ +LNG+ + +++ V +K ER
Sbjct: 215 HGEITSCVVMAE-SGKSKGFGFVAFEAPEAAEAAVNELNGLEIEGRKLVVCRAQKKAERT 273
Query: 195 TE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E IN+ + N+Y+KNL + +E L+ F YGTITSA VM+D G S
Sbjct: 274 MELKSRFEAQKMERINRYQGVNLYIKNLEDGLDDERLRSEFSTYGTITSAKVMKDEKGIS 333
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + D+A +AV +NG+ K YV AQ+K ER +L QF Q +
Sbjct: 334 KGFGFVCFSSPDEATKAVTEMNGRILVTKPLYVALAQRKEERRAQLSTQFLQRV 387
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 102/200 (51%), Gaps = 20/200 (10%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G A +F +++V + ++ + +L ++F + G++ S V + + +S G+G+V F
Sbjct: 185 GDQAKKF--KNVFVKNFGDSLDEEKLKEMFGKHGEITSCVVMAE--SGKSKGFGFVAFEA 240
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPS----------------LRKSGAGNIFIKN 118
+ A A+ LN + G+ + V + + + + N++IKN
Sbjct: 241 PEAAEAAVNELNGLEIEGRKLVVCRAQKKAERTMELKSRFEAQKMERINRYQGVNLYIKN 300
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
L+ +D + L FS +G I S KV D G SKG+GFV F + + A KA+ ++NG +L
Sbjct: 301 LEDGLDDERLRSEFSTYGTITSAKVMKDEKGISKGFGFVCFSSPDEATKAVTEMNGRILV 360
Query: 179 DKQVYVGHFLRKQERDTEIN 198
K +YV RK+ER +++
Sbjct: 361 TKPLYVALAQRKEERRAQLS 380
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/433 (49%), Positives = 290/433 (66%), Gaps = 53/433 (12%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A +Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN+++
Sbjct: 34 ATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDT 93
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
RAL+ LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 94 AHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 153
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R +
Sbjct: 154 GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 213
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+Y+KN+ +E+ +K F ++G ITSA + RD +GKS+ FGFVNF
Sbjct: 214 KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTH 273
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 274 ESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNL 333
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD--------------------------------- 340
D +DD+KL++LF P+G+ITS KVMRD
Sbjct: 334 TDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAA 393
Query: 341 ------------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQ
Sbjct: 394 EEKEKEEEKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 453
Query: 383 RKEDRRARLQVCL 395
RK+ RR++L+ +
Sbjct: 454 RKDVRRSQLEASI 466
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 167/314 (53%), Gaps = 21/314 (6%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E N TP N V + + + ++++ LD ++ L++ FS+ G + S +
Sbjct: 13 ENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 72
Query: 143 VATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
V D + +S GY +V +++ ++A+++LN L+ K + +RD + K+
Sbjct: 73 VCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTG 128
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
NV++KNL + + L +F +G I S V +D G SK +GFV++E ++ A A++
Sbjct: 129 QGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Query: 262 ALNGKKFDDKEWYVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
+NG +DK+ +VG K +R+ E+K F N+YIKN+D ++
Sbjct: 189 HVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDPEVE 235
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+ ++LF FG ITS + RD G SRG GFV FST E A A+ EMN K V S+ LYV
Sbjct: 236 DEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Query: 379 ALAQRKEDRRARLQ 392
AQ+K +R L+
Sbjct: 296 GRAQKKHEREEELR 309
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER--ELELKHQFEQNMK 297
GKSK FGFV F + D+A++AV +N + + K YV AQ+K R +LE Q N++
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIR 473
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/370 (58%), Positives = 281/370 (75%), Gaps = 3/370 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V +S L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF L KPIR+M+S RDPSLR+SG GN+FIKNLD+AID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLLRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV FE ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ ++ + G NLY+KNLDD+IDD++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ FSP+G+ITS KVM D G S+G GFV F+ EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 363 QRKEERKAHL 372
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 157/283 (55%), Gaps = 16/283 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + ++ L + FS G +LS +V D + +S GY +V F A++A++
Sbjct: 2 ASLYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N LL +K + + +RD + +S NV++KNL + + + +F +G I
Sbjct: 62 TMNFDLLRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 118 SCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GF
Sbjct: 177 -------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 351 VAFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQ 392
VAF T E A A+ +NGK M K LYVA AQ+K +R+ L+
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELK 270
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 162/295 (54%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV F+ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ ++ L+ +F YG ITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + +A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/433 (49%), Positives = 290/433 (66%), Gaps = 53/433 (12%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A +Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN+++
Sbjct: 34 ATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDT 93
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
RAL+ LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 94 AHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 153
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R +
Sbjct: 154 GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 213
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+Y+KN+ +E+ +K F ++G ITSA + RD +GKS+ FGFVNF
Sbjct: 214 KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTH 273
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 274 ESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNL 333
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD--------------------------------- 340
D +DD+KL++LF P+G+ITS KVMRD
Sbjct: 334 TDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAA 393
Query: 341 ------------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQ
Sbjct: 394 EEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 453
Query: 383 RKEDRRARLQVCL 395
RK+ RR++L+ +
Sbjct: 454 RKDVRRSQLEASI 466
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 167/314 (53%), Gaps = 21/314 (6%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E N TP N V + + + ++++ LD ++ L++ FS+ G + S +
Sbjct: 13 ENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 72
Query: 143 VATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
V D + +S GY +V +++ ++A+++LN L+ K + +RD + K+
Sbjct: 73 VCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTG 128
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
NV++KNL + + L +F +G I S V +D G SK +GFV++E ++ A A++
Sbjct: 129 QGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Query: 262 ALNGKKFDDKEWYVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
+NG +DK+ +VG K +R+ E+K F N+YIKN+D ++
Sbjct: 189 HVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDPEVE 235
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+ ++LF FG ITS + RD G SRG GFV FST E A A+ EMN K V S+ LYV
Sbjct: 236 DEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Query: 379 ALAQRKEDRRARLQ 392
AQ+K +R L+
Sbjct: 296 GRAQKKHEREEELR 309
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER--ELELKHQFEQNMK 297
GKSK FGFV F + D+A++AV +N + + K YV AQ+K R +LE Q N++
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIR 473
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/373 (55%), Positives = 281/373 (75%), Gaps = 4/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AI+K+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S +M D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 366 ALAQRKEERQAYL 378
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 172/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD + G ++S V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNG+ + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS ++ TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVELMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I + + N+YVKNL + +E L+K+F +GTITSA VM +G G+SK
Sbjct: 275 ELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +++ Q M
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 165/298 (55%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ DL S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + KS N++VKNL +S + L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S ++M D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVELMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ Q +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S ++ RD I+ GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--LITSGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F ++A AL MN ++ KP+ + +QR R
Sbjct: 59 FQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/374 (58%), Positives = 271/374 (72%), Gaps = 5/374 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL V + QL+ LF+Q+ V +VRVCRD+ + SLGYGYVNF + QEA RALE
Sbjct: 2 ASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALE 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNFTPL GK IRVM+S+RDPSLRKSG N+F+KNL+ ID K L++ FS+FG ILSCKV
Sbjct: 62 ALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKV 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
ATD GQSKGYGFVQ++ EESA+ AI LNGML N+++++VG +R+++R+ KFT
Sbjct: 122 ATDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREV-----KFT 176
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVY+KNL +E+DL++ F +G ITSAVVMRD DG SKCFGFVNF+ + A AVE
Sbjct: 177 NVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKA 236
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NGK DK YVG+AQKK ER+ ELK +F + DK G NLY+KN+DD I+DE LK
Sbjct: 237 NGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLK 296
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+LF FG + SCKVM D G S+GSGFV+F+T E RA+ MNG++V KPLYV LAQ
Sbjct: 297 KLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQP 356
Query: 384 KEDRRARLQVCLLQ 397
KE+R+A L Q
Sbjct: 357 KEERKAMLMAHFAQ 370
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 156/297 (52%), Gaps = 15/297 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L+V +LE N+ LY++F+ G ++S +V D S +S GYG+V + + A A
Sbjct: 88 GRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVATD-SAGQSKGYGFVQYETEESAEAA 146
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LN N + + V R R+ N++IKNL L F+ FG I S
Sbjct: 147 INGLNGMLANNRKMFVGLHMRRRD-REVKFTNVYIKNLPTEFSEDDLRQEFAPFGEITSA 205
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE--------- 192
V D +G SK +GFV F E A +A+EK NG + DK +YVG +K+E
Sbjct: 206 VVMRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRF 265
Query: 193 ---RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
RD +++K N+Y+KN+ + +E L+K F E+G + S VM D G+SK GFV+
Sbjct: 266 GRGRDNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVS 325
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ-NMKEAADKFQG 305
F ++ RA+ +NG+ K YVG AQ K ER+ L F Q N+ AA ++ G
Sbjct: 326 FATAEAGQRAINRMNGRIVGKKPLYVGLAQPKEERKAMLMAHFAQRNLAMAASQYAG 382
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/413 (51%), Positives = 293/413 (70%), Gaps = 40/413 (9%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGEKAL 117
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 118 EELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+AQ+AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 178 VAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 237
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN++ ++++ ++ F YG ITS+ + RD DGKS+ FGFVN+ + A +AV
Sbjct: 238 NFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTTHESAYKAV 297
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F ++ YVG+AQKK ERE EL+ +E E A K+QG NLYIKNLDD +DDE
Sbjct: 298 DELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDE 357
Query: 321 KLKQLFSPFGSITSCKVMRD-PS------------------------------------- 342
KL+ +FS FG ITS KVMRD PS
Sbjct: 358 KLRHMFSEFGPITSAKVMRDAPSDGSDEEKEDEQEAEPKKEGNVVEADEEGSEKKGDKKF 417
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P++A++A+ EM+ +M+ KPLYVALAQRK+ R+++L+ +
Sbjct: 418 GKSKGFGFVCFSNPDDATKAVAEMSQRMINGKPLYVALAQRKDVRKSQLEASI 470
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/383 (55%), Positives = 290/383 (75%), Gaps = 5/383 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q + SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ N+ +
Sbjct: 106 QPSSASLYVGELDPSVTEAILFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNSSDGE 165
Query: 80 RALEMLNFTPLNGKPI---RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
RALE LN++ + GKP R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF AFG
Sbjct: 166 RALEQLNYSLIKGKPWHVSRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFVAFG 225
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
N+LSCKVA D G SKGYGFV ++ E+A AI+ ++GMLLNDK+VYVG + ++ER ++
Sbjct: 226 NVLSCKVAVDEQGNSKGYGFVHYETAEAADAAIKAVDGMLLNDKKVYVGRHIPRKERQSK 285
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
++ +++FTN+YVKNL E++ +K F YGTITSAV+ D DGKSK FGFVN+E +
Sbjct: 286 LDEIRAQFTNIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKSKGFGFVNYETHE 345
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A +AV+ALN K + K+ +VG+AQK++ER+ EL+ F+ E K QG NLYIKN+D
Sbjct: 346 MAQKAVDALNEKDINGKKLFVGRAQKRNERDEELRRTFDAAKMERLAKLQGVNLYIKNID 405
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D +DDEKL+ F P+G+ITS K+MRD G+S+G GFV FSTP+EA+RA+ EMN KM+ SK
Sbjct: 406 DDMDDEKLRAEFEPYGTITSSKIMRDDKGVSKGFGFVCFSTPDEATRAIAEMNNKMIGSK 465
Query: 375 PLYVALAQRKEDRRARLQVCLLQ 397
PLYV+LAQR++ RR +L+ + Q
Sbjct: 466 PLYVSLAQRRDVRRQQLESQISQ 488
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 161/301 (53%), Gaps = 23/301 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G V+S +V D S GYG+V++ A+ A A
Sbjct: 199 GQGNIFIKNLDEGIDNKALHDTFVAFGNVLSCKVAVD-EQGNSKGYGFVHYETAEAADAA 257
Query: 82 LEMLNFTPLNGKPI----RVMYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ ++ LN K + + R L + A NI++KNLD ID F +
Sbjct: 258 IKAVDGMLLNDKKVYVGRHIPRKERQSKLDEIRAQFTNIYVKNLDTEIDEDEFRKLFEPY 317
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + D +G+SKG+GFV ++ E AQKA++ LN +N K+++VG ++ ERD
Sbjct: 318 GTITSAVLNLDADGKSKGFGFVNYETHEMAQKAVDALNEKDINGKKLFVGRAQKRNERDE 377
Query: 196 EINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ ++ + N+Y+KN+ + +E L+ F YGTITS+ +MRD G SK
Sbjct: 378 ELRRTFDAAKMERLAKLQGVNLYIKNIDDDMDDEKLRAEFEPYGTITSSKIMRDDKGVSK 437
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ----NMKEA 299
FGFV F D+A RA+ +N K K YV AQ++ R +L+ Q Q M++A
Sbjct: 438 GFGFVCFSTPDEATRAIAEMNNKMIGSKPLYVSLAQRRDVRRQQLESQISQRNQIRMQQA 497
Query: 300 A 300
A
Sbjct: 498 A 498
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/440 (49%), Positives = 300/440 (68%), Gaps = 45/440 (10%)
Query: 1 MAQVQAQGQNVNGGGANANQFG-----TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV 55
+A Q Q ++ G G N + SLYVG+L+ +VT++ L++LF+Q+G V S+RV
Sbjct: 86 VAAGQFQNEDQEGAGPTPNSAAPHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRV 145
Query: 56 CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIF 115
CRD TRRSLGY YVN++ + +ALE LN+T + G+P R+M+S RDP+LRK+G GN+F
Sbjct: 146 CRDAVTRRSLGYAYVNYNATADGEKALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVF 205
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
IKNLD AID+KALHDTF+AFGNILSCKVA D NG SKGYGFV ++ +E+A AI+ +NGM
Sbjct: 206 IKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAANAIKHVNGM 265
Query: 176 LLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
LLN+K+VYVG+ + K++R ++ K+ FTNVYVKN+ T+E+ ++ F +YG +TS+
Sbjct: 266 LLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSS 325
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
+ R +GKS+ FGFVNF + A++AVE LNGK F +E YVG+AQKK ERE EL+ +E
Sbjct: 326 LARSDEGKSRGFGFVNFTTHEAASKAVEELNGKDFRGQELYVGRAQKKHEREEELRRSYE 385
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS----------- 342
+E A+K+QG NLYIKNL D +DD+KL+Q+FS +G ITS KVMRD
Sbjct: 386 AARQEKANKYQGVNLYIKNLGDDVDDDKLRQMFSEYGPITSAKVMRDSVVESAAEDEKDK 445
Query: 343 ---------------------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
G S+G GFV FS P++A++A+ EMN +M+ +KP
Sbjct: 446 ENKKEDEEEKEGETAEKKAETKEKRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMIDNKP 505
Query: 376 LYVALAQRKEDRRARLQVCL 395
LYVALAQRK+ R+++L+ +
Sbjct: 506 LYVALAQRKDVRKSQLEASI 525
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 281/370 (75%), Gaps = 2/370 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVG+L+ N+T++ LYD+F+ +G + S+RVCRD T+ SLGY YVN+++ + +A++
Sbjct: 50 ASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQ 109
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+ +NG+P R+M+S RDP++RK G+GNIFIKNL AID+KALH+TFS FG +LSCKV
Sbjct: 110 ELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKV 169
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
A D NG S+G+GFV F E A+ AIE +NGML+N +VYV + K++R +++ ++K
Sbjct: 170 ALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKAN 229
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKN+ TT+E+ ++ F +YG I SA + +D +GK K FGFVNF + + AA+AVE
Sbjct: 230 FTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVE 289
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK+F + YVG+AQKK ER ELK Q+EQ E KFQG NL+IKNLDDSIDDEK
Sbjct: 290 ELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEK 349
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK+ F+P+G+ITS +VMRD G S+G GFV FS+PEEA++A+ E N ++V KPLYVA+A
Sbjct: 350 LKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIA 409
Query: 382 QRKEDRRARL 391
QRK+ RR++L
Sbjct: 410 QRKDVRRSQL 419
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 158/290 (54%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L + + L++ F+ G+V+S +V D S G+G+V+F +A A
Sbjct: 136 GSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDA 194
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRK-----SGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N +NG + V M+ + + K + NI++KN+D + FS +
Sbjct: 195 IEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQY 254
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I+S + D G+ KG+GFV F + +A KA+E+LNG + +YVG +K ER
Sbjct: 255 GEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAE 314
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K +KF N+++KNL +S +E L++ F YGTITSA VMRD +G SK
Sbjct: 315 ELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSK 374
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F + ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 375 GFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 424
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 152/289 (52%), Gaps = 15/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ LD I L+D FS G I S +V D + S GY +V + + E+ +KAI+
Sbjct: 50 ASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQ 109
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+LN +N + + ERD I K N+++KNL + + L ++F +G +
Sbjct: 110 ELNYAEINGRPCRI----MWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVL 165
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D +G S+ FGFV+F+ DA A+EA+NG + E YV K +R +L+
Sbjct: 166 SCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLE- 224
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
EA F N+Y+KN+D DE+ +QLFS +G I S + +D G +G GF
Sbjct: 225 -------EAKANF--TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGF 275
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
V F A++A+ E+NGK S+ LYV AQ+K +R L+ Q R
Sbjct: 276 VNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYR 324
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+F +L++ +L+ ++ D +L + F G + S RV RD S G+G+V FS+ +EA
Sbjct: 330 KFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRD-QEGNSKGFGFVCFSSPEEAT 388
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
+A+ N + GKP+ V + R R A I +N
Sbjct: 389 KAMTEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 427
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/400 (52%), Positives = 288/400 (72%), Gaps = 25/400 (6%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N +G G + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y
Sbjct: 2 NASGPG-----YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD +ID+KAL+
Sbjct: 57 INFQQPVDAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D NG S+GYGFV F+ E+A +AIE +NGMLLND++V+VGHF
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN + ++ L++ F ++G S VM D G+SK FGF
Sbjct: 176 RKEREAEFGAKAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSTGRSKGFGF 235
Query: 248 VNFENSDDAAR----------------AVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
VNFE ++A + AV +NGK+ + + YVG+AQK+ ER+ ELK +
Sbjct: 236 VNFEKHEEAQKARGSSCCAQRPPLRWQAVADMNGKEINGRIVYVGRAQKRLERQSELKRK 295
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
FEQ +E ++QG NLY+KNLDD IDD++L++ FSP+G+ITS KVM + G S+G GFV
Sbjct: 296 FEQIKQERVSRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFV 354
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 355 CFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAIL 394
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 166/310 (53%), Gaps = 39/310 (12%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + R GYG+V+F + A RA
Sbjct: 97 GVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSR--GYGFVHFETHEAATRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D L + FS F
Sbjct: 155 IETMNGMLLNDRKVFVGHFKSRKEREAEFGAKAMEFTNVYIKNFGDDMDDDRLREIFSKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKA----------------IEKLNGMLLND 179
G LS KV D G+SKG+GFV F+ E AQKA + +NG +N
Sbjct: 215 GKTLSVKVMMDSTGRSKGFGFVNFEKHEEAQKARGSSCCAQRPPLRWQAVADMNGKEING 274
Query: 180 KQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEY 226
+ VYVG ++ ER +E+ K KF N+YVKNL + ++ L+K F Y
Sbjct: 275 RIVYVGRAQKRLERQSEL-KRKFEQIKQERVSRYQGVNLYVKNLDDGIDDDRLRKEFSPY 333
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
GTITSA VM +G G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+
Sbjct: 334 GTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKA 392
Query: 287 ELKHQFEQNM 296
L +Q+ Q +
Sbjct: 393 ILTNQYMQRL 402
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 164/305 (53%), Gaps = 36/305 (11%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG G ++++ +L + L++ FS G I+S +V D+ +S GY ++ F
Sbjct: 4 SGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPV 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N ++ + + + +RD + KS NV++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V+ D +G S+ +GFV+FE + A RA+E +NG +D++ +VG + + E
Sbjct: 120 SAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE E A + N+YIKN D +DD++L+++FS FG S KVM D +G
Sbjct: 179 REAEF----------GAKAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSTG 228
Query: 344 ISRGSGFVAFSTPEEASRA----------------LLEMNGKMVVSKPLYVALAQRKEDR 387
S+G GFV F EEA +A + +MNGK + + +YV AQ++ +R
Sbjct: 229 RSKGFGFVNFEKHEEAQKARGSSCCAQRPPLRWQAVADMNGKEINGRIVYVGRAQKRLER 288
Query: 388 RARLQ 392
++ L+
Sbjct: 289 QSELK 293
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/385 (55%), Positives = 284/385 (73%), Gaps = 5/385 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + SLYVGDL T++ LYD F+Q G V+S+RVCRD+ TRRSLGY YVNF ++
Sbjct: 5 APSYPMASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPED 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RA++ +NF L GK IR+M+S RDP+LRKSG GNIFIKNLDK ID+K L+DTFSAFGN
Sbjct: 65 AERAIDTMNFDELKGKAIRIMWSQRDPALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV +L G+SKGYGFV F+ EE+A KAIEKL+GML+NDK+V+VG F + ER E
Sbjct: 125 ILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREY 184
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNV++KNL + L + FGE+G++ S + D +GKS+ FGFV+FE +
Sbjct: 185 GDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHEC 244
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A + VE L+ K+F+ K+ +VG+AQKK+ER+ ELK +FE+ E ++QG NLY+KNLDD
Sbjct: 245 AEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDD 304
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDP---SGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
SI D+ L++ F+P+G+ITS KVM D S+G GFV F++ EEA++A+ EMNG+++
Sbjct: 305 SITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIA 364
Query: 373 SKPLYVALAQRKEDRRARLQVCLLQ 397
SKPLYVALAQRK++R+A LQ +Q
Sbjct: 365 SKPLYVALAQRKDERKAHLQQQYMQ 389
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 175/318 (55%), Gaps = 31/318 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + LYD F+ G ++S +V +L+ S GYG+V+F + A +A
Sbjct: 97 GVGNIFIKNLDKTIDNKMLYDTFSAFGNILSCKVNVNLAGE-SKGYGFVHFETEEAAVKA 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E L+ +N K + V + R +R+ G N+FIKNL D L + F
Sbjct: 156 IEKLDGMLMNDKKVFVGRFKSRGERVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEH 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G+++S +ATD NG+S+ +GFV F+ E A+K +EKL+ K+++VG +K ER
Sbjct: 216 GSVMSVALATDENGKSRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQA 275
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD--- 239
E+ K KF N+YVKNL +S T++ L++ F YG ITS+ VM D D
Sbjct: 276 EL-KVKFEKLKHERNQRYQGVNLYVKNLDDSITDDILREHFAPYGNITSSKVMTDTDVEG 334
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE- 298
+SK FGFV F ++++A +AV +NG+ K YV AQ+K ER+ L+ Q+ Q +
Sbjct: 335 TRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVALAQRKDERKAHLQQQYMQRVTTG 394
Query: 299 ------AADKFQGANLYI 310
++ Q NLY+
Sbjct: 395 MRLQAFPTNQPQYGNLYM 412
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/420 (50%), Positives = 292/420 (69%), Gaps = 47/420 (11%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 61 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTTDGEKAL 120
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 121 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 180
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+V+VGH + K++R ++ K+
Sbjct: 181 VAQDESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKA 240
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTN+YVKN+ T+E+ ++ F ++G +TSA + RD D GKS+ FGFVNF N + AA A
Sbjct: 241 NFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATA 300
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LNGK F ++ YVG+AQKK ERE EL+ +E E A K+QG NLY+KNLDD +DD
Sbjct: 301 VDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDD 360
Query: 320 EKLKQLFSPFGSITSCKVMRDPS------------------------------------- 342
EKL++LF+PFG+ITS KVMRD +
Sbjct: 361 EKLRELFTPFGAITSAKVMRDSAAETAEAEKKEEEKNKENKKEGDAEEGEKADGEKKEAP 420
Query: 343 -------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P+EA++A+ +MN MV KPLYVALAQRK+ R+ +L+ +
Sbjct: 421 KSEKRTVGKSKGFGFVCFSNPDEATKAIADMNQNMVNGKPLYVALAQRKDVRKGQLEASI 480
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/370 (58%), Positives = 279/370 (75%), Gaps = 3/370 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLD+ ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRQIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D G SKGYGFV F+ EE+A +IEK+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 LDEKGNSKGYGFVHFETEEAANTSIEKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L+ F YG ITS VM DGKSK FGFV FE ++ A AV+A
Sbjct: 183 TNVYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ K+ + G NLY+KNLDDSIDDE+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS +G+ITS KVM D G S+G GFV F +P EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 363 QRKEERKAHL 372
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 164/295 (55%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDRQIDNKAIYDTFSAFGNILSCKVALD-EKGNSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V R+ L + N+++KN + D + L D F +
Sbjct: 147 IEKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEEFDDEKLKDFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV F+ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL +S +E L+K F YGTITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 156/283 (55%), Gaps = 16/283 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + I+ L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N L+ +K + + +RD + +S NV++KNL + + +F +G I
Sbjct: 62 TMNFDLIRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRQIDNKAIYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G SK +GFV+FE + A ++E +NG + K+ YVGK + ERE EL
Sbjct: 118 SCKVALDEKGNSKGYGFVHFETEEAANTSIEKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + DDEKLK F P+G ITS KVM G S+G GF
Sbjct: 177 -------EKAKLF--TNVYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 351 VAFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQ 392
VAF T E A A+ +NGK M K LYVA AQ+K +R+ L+
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELK 270
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/417 (50%), Positives = 295/417 (70%), Gaps = 44/417 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 118 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVG+ + K++R ++ K+
Sbjct: 178 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 237
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ T+ED ++ F ++G +TS+ + RD +GK++ FGFVNF + A +AV
Sbjct: 238 NFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTHEAAFKAV 297
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNGK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNLDD +DDE
Sbjct: 298 EELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 357
Query: 321 KLKQLFSPFGSITSCKVMRD-PS------------------------------------- 342
KL+Q+F+ FG ITS KVMRD P
Sbjct: 358 KLRQMFAEFGPITSAKVMRDVPQEGEEEAKDQEKDKENQKEGEKEGESAEGAEKKTEKKS 417
Query: 343 ----GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P++A++A+ EMN +M+ +KPLYVALAQRK+ R+++L+ +
Sbjct: 418 DKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASI 474
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/390 (54%), Positives = 287/390 (73%), Gaps = 3/390 (0%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
+G ++ N TSLYVG+L+ +VT++ L+++F+ +G V S+RVCRD TR+SLGY YVN
Sbjct: 67 SGTPSDGNAPKNTSLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVN 126
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ NA + +ALE LN++ + G+ R+M+S RDPSLRK+G GNIFIKNLD AID+KALHDT
Sbjct: 127 YHNADDGEKALEELNYSLIKGRACRIMWSQRDPSLRKTGTGNIFIKNLDPAIDNKALHDT 186
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFG ILSCKVA D G SKGYGFV F + +SA AIE +NGMLLNDK+VYVGH + ++
Sbjct: 187 FSAFGTILSCKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVGHHVSRR 246
Query: 192 ERDT--EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
+R + E K+ FTNVY+KN+ T+E+ F ++G ITS +++D GK + FGFVN
Sbjct: 247 DRQSKFEAMKANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVN 306
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
FE+ + A +AV+ +N +F K+ YVG+AQK+ ERE EL+ ++EQ E K+QG NL+
Sbjct: 307 FESHEAAQKAVDEMNDYEFHGKKLYVGRAQKRHEREAELRKRYEQMKLEKMSKYQGVNLF 366
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
IKNL D +DD LK FS FG+ITS KVM D +G S+G GFV +S+PEEA++A+ EMN +
Sbjct: 367 IKNLSDEVDDNLLKTEFSAFGTITSAKVMTDENGKSKGFGFVCYSSPEEATKAIAEMNQR 426
Query: 370 MVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
M+ KPLYVALAQRK+ RR++L+ +Q R
Sbjct: 427 MLAGKPLYVALAQRKDVRRSQLE-AQIQAR 455
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/433 (49%), Positives = 293/433 (67%), Gaps = 55/433 (12%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+ +Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 41 STSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 100
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 101 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 160
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 161 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 220
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KNL + +EE+ ++ F ++G ITSA + RD +GKS+ FGFVN+ D
Sbjct: 221 FEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHD 280
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 281 SAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 340
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---------------------------- 346
D IDDEKL+++F+P+G+ITS KVMRD + I R
Sbjct: 341 DDIDDEKLREMFAPYGTITSAKVMRD-TNIERTQTPDSDKEKKEESKEEKPEAAEKTEEA 399
Query: 347 ------------------------GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
G GFV FS+P+EAS+A+ EMN +M+ KPLYVALAQ
Sbjct: 400 AKESGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQ 459
Query: 383 RKEDRRARLQVCL 395
RK+ RR++L+ +
Sbjct: 460 RKDVRRSQLEASI 472
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/370 (58%), Positives = 281/370 (75%), Gaps = 3/370 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V +S L+D F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLD+AID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV FE ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ ++ + G NLY+KNLDD+IDD++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ FSP+G+ITS KVM D G S+G GFV F+ EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 363 QRKEERKAHL 372
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 158/283 (55%), Gaps = 16/283 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + ++ L D FS+ G +LS +V D + +S GY +V F A++A++
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N L+ +K + + +RD + +S NV++KNL + + + +F +G I
Sbjct: 62 TMNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 118 SCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GF
Sbjct: 177 -------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 351 VAFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQ 392
VAF T E A A+ +NGK M K LYVA AQ+K +R+ L+
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELK 270
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 160/291 (54%), Gaps = 22/291 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV F+ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ ++ L+ +F YG ITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
SK FGFV F + +A AV LNG+ K YV AQ+K ER+ L Q+
Sbjct: 326 SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQY 376
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/350 (58%), Positives = 273/350 (78%), Gaps = 4/350 (1%)
Query: 44 FNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103
F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+ +NF + G+P+R+M+S RD
Sbjct: 18 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQRD 77
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEE 163
PSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ E
Sbjct: 78 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHE 136
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQK 221
+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E +E L++
Sbjct: 137 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKE 196
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
F +YG S VM D GKSK FGFV+FE +DA +AV+ +NGK+ + ++ YVG+AQKK
Sbjct: 197 LFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKK 256
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ER+ ELK +FEQ ++ ++QG NLY+KNLDD +DDE+L++ FSPFG+ITS KVM +
Sbjct: 257 GERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME- 315
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 316 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 365
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 172/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 84 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 141
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS +
Sbjct: 142 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKY 201
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS +V TD +G+SKG+GFV F+ E AQKA++ +NG LN +QVYVG +K ER
Sbjct: 202 GPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQN 261
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 262 EL-KRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG-GRS 319
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 320 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 373
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 153/262 (58%), Gaps = 16/262 (6%)
Query: 132 FSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
FS G ILS +V D+ +S GY +V F A++A++ +N ++ + + +
Sbjct: 18 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMW---- 73
Query: 191 QERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250
+RD + KS N+++KNL +S + L +F +G I S V+ D +G SK +GFV+F
Sbjct: 74 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHF 132
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
E + A RA+E +NG +D++ +VG+ + + ERE EL A + N+YI
Sbjct: 133 ETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL----------GARAREFTNVYI 182
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KN + +DDEKLK+LFS +G S +VM D SG S+G GFV+F E+A +A+ +MNGK
Sbjct: 183 KNFGEDMDDEKLKELFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKE 242
Query: 371 VVSKPLYVALAQRKEDRRARLQ 392
+ + +YV AQ+K +R+ L+
Sbjct: 243 LNGRQVYVGRAQKKGERQNELK 264
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/368 (57%), Positives = 282/368 (76%), Gaps = 2/368 (0%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L+ +VT++ LYDLF+ +G V S+RVCRD T+ SLGY YVNF + A+E L
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKL 101
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N+TP+ G+P R+M+S RDPSLRK G+GN+FIKNL AID+KALHDTFS FGNILSCK+AT
Sbjct: 102 NYTPIKGRPCRIMWSQRDPSLRKKGSGNVFIKNLHPAIDNKALHDTFSVFGNILSCKIAT 161
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFT 203
D G+S+ +GFV F+ EE+A++AI+ +NGMLLN +VYV + K++R ++++ KS FT
Sbjct: 162 DETGKSRKFGFVHFEEEEAAKEAIDAINGMLLNGLEVYVAPHVSKKDRQSKLDEVKSNFT 221
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKN+ TT+E+ +K F YG ITSAV+ RD +GK + FGFVNFE+ + A +A E L
Sbjct: 222 NVYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKACEEL 281
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N F ++ YVG+AQKK ER ELK Q+E + E K+QG NL++KNLDDS+DD+KL+
Sbjct: 282 NDTDFKGQKLYVGRAQKKYERLQELKKQYESSRMEKLAKYQGVNLFVKNLDDSVDDQKLE 341
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+ F+PFG+ITS KVMRD +G S+G GFV FSTPEEA++A+ E N ++V KPLYVA+AQR
Sbjct: 342 EEFAPFGTITSVKVMRDEAGNSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 401
Query: 384 KEDRRARL 391
KE RR++L
Sbjct: 402 KEVRRSQL 409
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 154/290 (53%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L + + L+D F+ G ++S ++ D T +S +G+V+F + A A
Sbjct: 126 GSGNVFIKNLHPAIDNKALHDTFSVFGNILSCKIATD-ETGKSRKFGFVHFEEEEAAKEA 184
Query: 82 LEMLNFTPLNGKPIRVM--YSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNG + V S +D + KS N+++KN+D + FS +
Sbjct: 185 IDAINGMLLNGLEVYVAPHVSKKDRQSKLDEVKSNFTNVYVKNIDSETTQEEFEKMFSNY 244
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + D G+ +G+GFV F++ +A KA E+LN +++YVG +K ER
Sbjct: 245 GAITSAVLERDNEGKLRGFGFVNFEDHNAALKACEELNDTDFKGQKLYVGRAQKKYERLQ 304
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K +K+ N++VKNL +S ++ L++ F +GTITS VMRD G SK
Sbjct: 305 ELKKQYESSRMEKLAKYQGVNLFVKNLDDSVDDQKLEEEFAPFGTITSVKVMRDEAGNSK 364
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 365 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRSQLAQQIQ 414
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 142/280 (50%), Gaps = 15/280 (5%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ LD ++ L+D FS G++ S +V D + S GY +V F + + + AIEKL
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKL 101
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N + + + +RD + K NV++KNL + + L +F +G I S
Sbjct: 102 NYTPIKGRPCRI----MWSQRDPSLRKKGSGNVFIKNLHPAIDNKALHDTFSVFGNILSC 157
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+ D GKS+ FGFV+FE + A A++A+NG + E YV K +R+ +L
Sbjct: 158 KIATDETGKSRKFGFVHFEEEEAAKEAIDAINGMLLNGLEVYVAPHVSKKDRQSKLD--- 214
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
E F N+Y+KN+D E+ +++FS +G+ITS + RD G RG GFV
Sbjct: 215 -----EVKSNF--TNVYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVN 267
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F A +A E+N + LYV AQ+K +R L+
Sbjct: 268 FEDHNAALKACEELNDTDFKGQKLYVGRAQKKYERLQELK 307
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ +V D +L + F G + SV+V RD S G+G+V FS +EA +A+
Sbjct: 324 VNLFVKNLDDSVDDQKLEEEFAPFGTITSVKVMRD-EAGNSKGFGFVCFSTPEEATKAIT 382
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 383 EKNQQIVAGKPLYVAIAQRKEVRRSQLAQQIQARN 417
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/416 (50%), Positives = 292/416 (70%), Gaps = 43/416 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+GAGNIFIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 178
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 179 VAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ T+E+ ++ F ++G +TS+ + RD +GKS+ FGFVNF + AA+AV
Sbjct: 239 NFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAV 298
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D +DD+
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDD 358
Query: 321 KLKQLFSPFGSITSCKVMRDP--------------------------------------- 341
KL+ +FS +G ITS KVMRD
Sbjct: 359 KLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGD 418
Query: 342 --SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P++A++A+ EMN +MV KPLYVALAQRK+ R+++L+ +
Sbjct: 419 RKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASI 474
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 203/372 (54%), Positives = 288/372 (77%), Gaps = 3/372 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVG+L+ V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++ + +A+
Sbjct: 39 TASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAI 98
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+P R+M+S RDPSLRK G+GNIFIKNL ID+KALHDTFS FGNILSCK
Sbjct: 99 EKLNYTPIKGQPCRIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFGNILSCK 158
Query: 143 VATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+ATD + G SKG+GFV F+++E+A++AI+ +NGMLLN ++VYV + +++R +++ ++K
Sbjct: 159 IATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLLNGQEVYVAPHVSRKDRQSKLEEAK 218
Query: 202 --FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
FTNVY+KN+S T E++ ++ F + +TS + +D +GK + FGFVN+E AA+A
Sbjct: 219 ANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKA 278
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VE LNG +F ++ +VG+AQKK ER+ EL+ Q+EQ+ E +K+QG NL+IKNLDDSIDD
Sbjct: 279 VEELNGVEFHGQQLHVGRAQKKYERQQELRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDD 338
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
E+L++ FSPFG+ITS KVM +G S+G GFV FSTPEEA++A+ E N ++V KPLYVA
Sbjct: 339 ERLREEFSPFGTITSVKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 398
Query: 380 LAQRKEDRRARL 391
+AQRK+ RR++L
Sbjct: 399 IAQRKDVRRSQL 410
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 154/290 (53%), Gaps = 18/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L A++ + L+D F+ G ++S ++ D T S G+G+V+F + + A A
Sbjct: 126 GSGNIFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREA 185
Query: 82 LEMLNFTPLNGKPI----RVMYSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNG+ + V R L ++ A N++IKN+ + + F
Sbjct: 186 IDAINGMLLNGQEVYVAPHVSRKDRQSKLEEAKANFTNVYIKNISLETPEQEFEEFFKKV 245
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
+ S + D G+ +G+GFV ++ A KA+E+LNG+ + +Q++VG +K ER
Sbjct: 246 APVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAVEELNGVEFHGQQLHVGRAQKKYERQQ 305
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K + N+++KNL +S +E L++ F +GTITS VM +GKSK
Sbjct: 306 ELRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDDERLREEFSPFGTITSVKVMTTENGKSK 365
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 366 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 415
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 164/322 (50%), Gaps = 22/322 (6%)
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPSLR-KSGAGNIFIKNLDKAIDHKALHDTFS 133
A + A LE LN L P S S + ++ ++++ LD + L+D FS
Sbjct: 5 ADKTAEQLEQLN---LQEAPQTAPTSTDSDSQKVETSTASLYVGELDPTVSEALLYDIFS 61
Query: 134 AFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
G++ S +V D + S GY +V F++ E+ ++AIEKLN + + + +
Sbjct: 62 PIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAIEKLNYTPIKGQPCRI----MWSQ 117
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFE 251
RD + K N+++KNL + L +F +G I S + D G SK FGFV+FE
Sbjct: 118 RDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFE 177
Query: 252 NSDDAAR-AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
SD+AAR A++A+NG + +E YV + +R+ +L+ EA F N+YI
Sbjct: 178 -SDEAAREAIDAINGMLLNGQEVYVAPHVSRKDRQSKLE--------EAKANF--TNVYI 226
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KN+ +++ ++ F +TS + +D G RG GFV + T A++A+ E+NG
Sbjct: 227 KNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAVEELNGVE 286
Query: 371 VVSKPLYVALAQRKEDRRARLQ 392
+ L+V AQ+K +R+ L+
Sbjct: 287 FHGQQLHVGRAQKKYERQQELR 308
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L++ +L+ ++ D +L + F+ G + SV+V +S G+G+V FS +EA +A+
Sbjct: 325 VNLFIKNLDDSIDDERLREEFSPFGTITSVKVM-TTENGKSKGFGFVCFSTPEEATKAIT 383
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 384 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 418
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/417 (50%), Positives = 292/417 (70%), Gaps = 44/417 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 67 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKAL 126
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + GKP R+M+S RDP+LRK+G GNIFIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 127 EELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 186
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVG+ + K++R ++ K+
Sbjct: 187 VATDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 246
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TNVY+KN++ TEE+ ++ F ++G ITS+ + RD +GK + FGFVN+ AA+ V
Sbjct: 247 NYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFGFVNYSTHASAAKCV 306
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E +NGK++ +E YVG+AQKK ERE EL+ +E E +K+QG NLYIKNL D +DDE
Sbjct: 307 EEMNGKEWRGQELYVGRAQKKHEREEELRKSYEAARLEKQNKYQGVNLYIKNLSDEVDDE 366
Query: 321 KLKQLFSPFGSITSCKVMRD----PS---------------------------------- 342
KL+ +F+ FG ITS KVMRD P+
Sbjct: 367 KLRAMFAEFGPITSAKVMRDTPPEPAKDEKNKENNKESEKEGEKKEGEGEGDKKPEVKKP 426
Query: 343 ----GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV F+ P++A++A+ EMN +MV KPLYVALAQRKE R+++L+ +
Sbjct: 427 ERKLGKSKGFGFVCFANPDDATKAVAEMNQRMVDGKPLYVALAQRKEVRKSQLEASI 483
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/370 (57%), Positives = 280/370 (75%), Gaps = 3/370 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D G SKGYGFV F+ EE+A +I+++NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 IDEKGNSKGYGFVHFETEEAANTSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV +E ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ K+ D G NLY+KNLDD+IDDE+
Sbjct: 243 LNGKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS +G+ITS KVM D G S+G GFV F +P EA+ A+ E+NG+++ SKPLYVALA
Sbjct: 303 LRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALA 362
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 363 QRKEERKAHL 372
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 158/283 (55%), Gaps = 16/283 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + I+ L + FS G +LS +V D + +S GY +V F A++A++
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N L+ +K + + +RD + +S NV++KNL + + + +F +G I
Sbjct: 62 TMNFDLIRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 118 SCKVAIDEKGNSKGYGFVHFETEEAANTSIDRVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GF
Sbjct: 177 -------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 351 VAFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQ 392
VA+ T E A A+ +NGK M SK LYVA AQ+K +R+ L+
Sbjct: 228 VAYETTEAAEAAVQALNGKDMGESKSLYVARAQKKAERQQELK 270
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 164/295 (55%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAID-EKGNSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + D + L + F +
Sbjct: 147 IDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV ++ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGESKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ +E L+K F YGTITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKKKRHDSVFGVNLYVKNLDDTIDDERLRKDFSMYGTITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 276/372 (74%), Gaps = 4/372 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL+ NVT+ QL+++F+ +G V S+RVCRD TRRSLGY YVNF N +A R
Sbjct: 21 LASASLYVGDLDPNVTEPQLFEVFSVVGPVASIRVCRDAMTRRSLGYAYVNFHNVVDAER 80
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + GK R+M+ HRDPS+RKSGAGNIFIKNLDK +D + LHDTFS FGNILS
Sbjct: 81 ALDTLNYTQIKGKACRIMWKHRDPSIRKSGAGNIFIKNLDKTVDTRTLHDTFSQFGNILS 140
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKV+ D + S+G+GFVQF+ E A +AI K+NGMLL DK+++VG F+ + ER++ +
Sbjct: 141 CKVSMDEHANSRGFGFVQFETAEEANEAISKVNGMLLEDKRLFVGPFIPRGERESTNGER 200
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVYVKN ++ +++D +KSF YG ITS +MR DG SKCFGFVNF+ +DDA +
Sbjct: 201 RFTNVYVKNFPDNVSDDDFRKSFERYGEITSCKIMRKEDGTSKCFGFVNFKEADDAKKCC 260
Query: 261 EALNGKKF--DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
E +NG+K +++ Y G+A+K+SER+ +LK +++Q E Q NLYIKNLDD+ID
Sbjct: 261 EEMNGQKPFGGERDIYAGRAEKESERKEKLKKKYDQIRMERLKNNQLVNLYIKNLDDTID 320
Query: 319 DEKLKQLFSPFGSITSCKVMRDP--SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
DEKL+Q F FG+ITS KVMRD +S+G GFV F+ PEEA+RA+ MNG+MV +KP+
Sbjct: 321 DEKLRQTFEQFGTITSAKVMRDKDRPEVSKGFGFVCFAQPEEATRAVTAMNGQMVGTKPI 380
Query: 377 YVALAQRKEDRR 388
YVAL Q E RR
Sbjct: 381 YVALHQPIEIRR 392
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 151/294 (51%), Gaps = 30/294 (10%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ V L+D F+Q G ++S +V D S G+G+V F A+EA A
Sbjct: 110 GAGNIFIKNLDKTVDTRTLHDTFSQFGNILSCKVSMDEHA-NSRGFGFVQFETAEEANEA 168
Query: 82 LEMLNFTPLNGKPIRVMYSHRDP-SLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+ +N L K R+ P R+S G N+++KN + +F +
Sbjct: 169 ISKVNGMLLEDK--RLFVGPFIPRGERESTNGERRFTNVYVKNFPDNVSDDDFRKSFERY 226
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM--LLNDKQVYVGHFLRKQER 193
G I SCK+ +G SK +GFV F + A+K E++NG ++ +Y G ++ ER
Sbjct: 227 GEITSCKIMRKEDGTSKCFGFVNFKEADDAKKCCEEMNGQKPFGGERDIYAGRAEKESER 286
Query: 194 DTEINK------------SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
++ K ++ N+Y+KNL ++ +E L+++F ++GTITSA VMRD D
Sbjct: 287 KEKLKKKYDQIRMERLKNNQLVNLYIKNLDDTIDDEKLRQTFEQFGTITSAKVMRDKDRP 346
Query: 242 --SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
SK FGFV F ++A RAV A+NG+ K YV Q +E++ Q +
Sbjct: 347 EVSKGFGFVCFAQPEEATRAVTAMNGQMVGTKPIYVALHQP-----IEIRRQMQ 395
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 286/372 (76%), Gaps = 2/372 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVG+LE ++ ++ L+++F+ +GQV S+RVCRD T+RSLGY YVN+ N ++ +A+
Sbjct: 59 TASLYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAI 118
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN++ + G+PIR+M+S RDP+ R++G GN+FIKNL AID+KALHDTFSAFG ILSCK
Sbjct: 119 DELNYSVVKGQPIRIMWSQRDPAKRRNGEGNVFIKNLHPAIDNKALHDTFSAFGRILSCK 178
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--S 200
VATD GQSKG+GFV F++ E+AQ AIE +NGMLLN+ +VYVG + +++R +++ +
Sbjct: 179 VATDNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHVARRDRQSKLEEVIK 238
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN+ +EE++++ F +GT+TS + +D +GKS+ F FVN+E + A +++
Sbjct: 239 SFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSI 298
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E+LN + + K+ YVG+AQKKSER ELK Q+E E K QG NL++KNLDDSIDDE
Sbjct: 299 ESLNDQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDE 358
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK+ F FG+I+S KVM D SG S+G GFV+FS+PEEASRA+ EMN M+ KPLYVAL
Sbjct: 359 KLKEEFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVAL 418
Query: 381 AQRKEDRRARLQ 392
AQRK+ RR++L+
Sbjct: 419 AQRKDVRRSQLE 430
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 160/293 (54%), Gaps = 25/293 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + L+D F+ G+++S +V D + +S G+G+V+F + + A A
Sbjct: 146 GEGNVFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-NFGQSKGFGFVHFESPEAAQAA 204
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLRKS-------GAGNIFIKNLDKAIDHKALHDTF 132
+E +N LN + V + RD R+S N+++KN+D + + + F
Sbjct: 205 IENVNGMLLNNNEVYVGPHVARRD---RQSKLEEVIKSFTNVYVKNIDLEASEEEVKELF 261
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+ FG + S + D G+S+G+ FV ++ E+A K+IE LN K++YVG +K E
Sbjct: 262 TPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIESLNDQDYKGKKLYVGRAQKKSE 321
Query: 193 RDTEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
R E+ KS+ N++VKNL +S +E L++ F +GTI+S VM D G
Sbjct: 322 RLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMIDESG 381
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
KSK FGFV+F + ++A+RA+ +N K YV AQ+K R +L+ Q +
Sbjct: 382 KSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVALAQRKDVRRSQLEQQIQ 434
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/370 (57%), Positives = 280/370 (75%), Gaps = 3/370 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D G SKGYGFV F+ EE+A +I+++NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 IDEKGNSKGYGFVHFETEEAANMSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV +E ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ K+ D G NLY+KNLDD+IDDE+
Sbjct: 243 LNGKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS +G+ITS KVM D G S+G GFV F +P EA+ A+ E+NG+++ SKPLYVALA
Sbjct: 303 LRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALA 362
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 363 QRKEERKAHL 372
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 158/283 (55%), Gaps = 16/283 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + I+ L + FS G +LS +V D + +S GY +V F A++A++
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N L+ +K + + +RD + +S NV++KNL + + + +F +G I
Sbjct: 62 TMNFDLIRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 118 SCKVAIDEKGNSKGYGFVHFETEEAANMSIDRVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GF
Sbjct: 177 -------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 351 VAFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQ 392
VA+ T E A A+ +NGK M SK LYVA AQ+K +R+ L+
Sbjct: 228 VAYETTEAAEAAVQALNGKDMGESKSLYVARAQKKAERQQELK 270
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 164/295 (55%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAID-EKGNSKGYGFVHFETEEAANMS 146
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + D + L + F +
Sbjct: 147 IDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV ++ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGESKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ +E L+K F YGTITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKKKRHDSVFGVNLYVKNLDDTIDDERLRKDFSMYGTITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/415 (50%), Positives = 292/415 (70%), Gaps = 42/415 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+GAGNIFIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 178
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 179 VAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ T+E+ ++ F ++G +TS+ + RD +GK++ FGFVNF + AA+AV
Sbjct: 239 NFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQAV 298
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D +DD+
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDD 358
Query: 321 KLKQLFSPFGSITSCKVMRDP--------------------------------------- 341
KL+ +FS +G ITS KVMRD
Sbjct: 359 KLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGEAEEEQKEGSEKKTEKKGDR 418
Query: 342 -SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P++A++A+ EMN +MV KPLYVALAQRK+ R+++L+ +
Sbjct: 419 KLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASI 473
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/433 (48%), Positives = 296/433 (68%), Gaps = 53/433 (12%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++
Sbjct: 51 AAAHPQASASLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNST 110
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +ALE LN+T + +P R+M+S RDP+LRK+G GNIFIKNLD AID+KALHDTF+AF
Sbjct: 111 ADGEKALEELNYTLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAF 170
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G SKGYGFV ++ +E+AQ+AI+ +NGMLLN+K+VYVGH + K++R +
Sbjct: 171 GNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQS 230
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFEN 252
+ K+ +TN+Y+KNL T+++ +K F +YG +TS+ + RD + GKS+ FGF+NF
Sbjct: 231 KFEEMKANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTT 290
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+ AA+AVE LN ++ +E YVG+AQKK ERE EL+ +E +E A K+ G NLYIKN
Sbjct: 291 HESAAKAVEELNSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKASKYVGVNLYIKN 350
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPS------------------------------ 342
LDD +DDEKL++LF+P+G ITS KVMR+ +
Sbjct: 351 LDDEVDDEKLRELFAPYGPITSAKVMRETASESDEEGKETKETEEVKEVKEEEEKPKVEG 410
Query: 343 --------------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
G S+G GFV FS P++A++A+ EMN +MV KPLYVA+AQ
Sbjct: 411 AAEGEADASGEKQAAARPKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVSGKPLYVAIAQ 470
Query: 383 RKEDRRARLQVCL 395
+KE R+++L+ +
Sbjct: 471 KKEVRKSQLEASI 483
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/419 (50%), Positives = 293/419 (69%), Gaps = 46/419 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 118
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 178
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 179 VAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+S ++++ ++ F +YG ITS+ + RD +GKS+ FGFVNF + AA+AV
Sbjct: 239 NFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAV 298
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E L+GK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNLDD +DDE
Sbjct: 299 EELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 358
Query: 321 KLKQLFSPFGSITSCKVMRD-PSGISRGS------------------------------- 348
KL+Q+F+ FG ITS KVMRD PS S
Sbjct: 359 KLRQMFAEFGPITSAKVMRDAPSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDADKKADK 418
Query: 349 ------------GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
GFV FS P++A++A+ EMN +M+ KPLYVALAQRK+ R+++L+ +
Sbjct: 419 KGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEASI 477
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/354 (58%), Positives = 274/354 (77%), Gaps = 4/354 (1%)
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
LY+ F+ G ++S+RV RD+ TRRSLGY VNF +A RAL+ +NF + GKP+R+M+
Sbjct: 2 LYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S RDPSLR+SG GN+FIKNL+K ID+KAL+DTFSAFGNILSCKV +D NG SKG+GFV F
Sbjct: 62 SQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHF 120
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEE 217
+ EE+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN + +E
Sbjct: 121 ETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDE 180
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L FG +G I S VM D GKSK FGFV+FE +DA +AV+ +NGK+ + K YVG+
Sbjct: 181 TLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGR 240
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
AQKK +R ELKH+FEQ ++ + ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KV
Sbjct: 241 AQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKV 300
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
M + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 301 MTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHL 353
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 170/307 (55%), Gaps = 23/307 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + LYD F+ G ++S +V D + S G+G+V+F + A RA
Sbjct: 72 GVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG--SKGHGFVHFETEEAAERA 129
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + + + G G N++IKN +D + L+ F F
Sbjct: 130 IEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRF 189
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G ILS KV TD G+SKG+GFV F+ E AQKA++++NG LN K +YVG +K +R T
Sbjct: 190 GQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHT 249
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E LQK F +GTITS VM +G G+S
Sbjct: 250 EL-KHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEG-GRS 307
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 308 KGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQRMASVRSG 367
Query: 303 FQGANLY 309
N Y
Sbjct: 368 PNPVNPY 374
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 153/266 (57%), Gaps = 16/266 (6%)
Query: 128 LHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
L++ FS+ G ILS +V D + +S GY V F+ A++A++ +N ++ K V +
Sbjct: 2 LYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVRI-- 59
Query: 187 FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
+RD + +S NV++KNL+++ + L +F +G I S V+ D +G SK G
Sbjct: 60 --MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHG 116
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
FV+FE + A RA+E +NG +D++ +VG+ + + ERE EL +F
Sbjct: 117 FVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELG--------TGTKEF--T 166
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N+YIKN D +DDE L LF FG I S KVM D G S+G GFV+F E+A +A+ EM
Sbjct: 167 NVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEM 226
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQ 392
NGK + K +YV AQ+K+DR L+
Sbjct: 227 NGKELNGKHIYVGRAQKKDDRHTELK 252
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/368 (58%), Positives = 276/368 (75%), Gaps = 1/368 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V +S L+D F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLD+AID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++E++ FTN
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQELGEKAKLFTN 182
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VYVKN +E +E L++ F YG ITS VM DGKSK FGFV FE ++ A AV+ALN
Sbjct: 183 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 242
Query: 265 GKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
GK + K YV +AQKK+ER+ ELK +FE+ ++ + G NLY+KNLDD+IDD++L+
Sbjct: 243 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 302
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
FSP+G+ITS KVM D G S+G GFV F+ EA+ A+ E+NG++V SKPLYVALAQR
Sbjct: 303 IAFSPYGNITSAKVMTDEEGRSKGFGFVCFNPESEATCAVTELNGRVVGSKPLYVALAQR 362
Query: 384 KEDRRARL 391
KE+R+A L
Sbjct: 363 KEERKADL 370
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 157/283 (55%), Gaps = 18/283 (6%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + ++ L D FS+ G +LS +V D + +S GY +V F A++A++
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N L+ +K + + +RD + +S NV++KNL + + + +F +G I
Sbjct: 62 TMNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G SK +GFV+FE + A +++ +NG + K+ YVGK + E+EL
Sbjct: 118 SCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQEL---- 173
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GF
Sbjct: 174 ------GEKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 225
Query: 351 VAFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQ 392
VAF T E A A+ +NGK M K LYVA AQ+K +R+ L+
Sbjct: 226 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELK 268
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 162/293 (55%), Gaps = 20/293 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAFGN 137
++ +N LNGK + V ++ L + N+++KN + D + L + F +G
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEQELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGK 206
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTE 196
I S KV + +G+SKG+GFV F+ E+A+ A++ LNG + + K +YV +K ER E
Sbjct: 207 ITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQE 266
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL ++ ++ L+ +F YG ITSA VM D +G+SK
Sbjct: 267 L-KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSK 325
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F +A AV LNG+ K YV AQ+K ER+ +L Q+ ++M
Sbjct: 326 GFGFVCFNPESEATCAVTELNGRVVGSKPLYVALAQRKEERKADLASQYMRHM 378
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/416 (50%), Positives = 292/416 (70%), Gaps = 43/416 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+GAGNIFIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 180 VAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ T+++ ++ F ++G +TS+ + RD +GK++ FGFVNF + AA+AV
Sbjct: 240 NFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKAV 299
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D +DDE
Sbjct: 300 DDLNGKDFRGQDLYVGRAQKKHEREEELRRSYEAARLEKANKYQGVNLYIKNLGDDVDDE 359
Query: 321 KLKQLFSPFGSITSCKVMRDP--------------------------------------- 341
KL+ +FS +G ITS KVMRD
Sbjct: 360 KLRAMFSEYGPITSAKVMRDSLIEGEEKDEKDKENKKEGETKEEEEKEGSAEKKTEKKGD 419
Query: 342 --SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P++A++A+ EMN +MV KPLYVALAQRK+ R+++L+ +
Sbjct: 420 RKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASI 475
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/419 (50%), Positives = 293/419 (69%), Gaps = 46/419 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 180 VAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+Y+KN+S ++++ ++ F +YG ITS+ + RD +GKS+ FGFVNF + AA+AV
Sbjct: 240 NFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAV 299
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E L+GK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNLDD +DDE
Sbjct: 300 EELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 359
Query: 321 KLKQLFSPFGSITSCKVMRD-PSGISRGS------------------------------- 348
KL+Q+F+ FG ITS KVMRD PS S
Sbjct: 360 KLRQMFAEFGPITSAKVMRDAPSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDADKKADK 419
Query: 349 ------------GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
GFV FS P++A++A+ EMN +M+ KPLYVALAQRK+ R+++L+ +
Sbjct: 420 KGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEASI 478
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/370 (60%), Positives = 280/370 (75%), Gaps = 3/370 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF L KPIR+M+S RDPSLR+SG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLLRNKPIRIMWSQRDPSLRRSGIGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A AIEK+NGMLLN K+VYVG F+ ++ER+ ++ K+K F
Sbjct: 123 TDDKGTSKGYGFVHFETEEAANNAIEKVNGMLLNGKKVYVGKFIPRKEREKDLGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN + +E L++ F YG ITS VM DGKSKCFGFV FE ++ A AVEA
Sbjct: 183 TNVYVKNFGDDVDDEKLKEMFDPYGKITSYKVMIKEDGKSKCFGFVAFETTEAAEAAVEA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK D K YV +AQKK+ER+ ELK +FE+ K+ + G NLY+KNLDD+IDDE+
Sbjct: 243 LNGKDMGDGKALYVARAQKKAERQQELKRKFEELKKKRQESVYGVNLYVKNLDDTIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS FG+ITS KVM D G S+G GFV F P EA+ A+ EMNG++V SKPLYVALA
Sbjct: 303 LRKEFSLFGTITSAKVMTDEDGRSKGFGFVCFVAPHEATCAVTEMNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARL 391
QRKEDR+A L
Sbjct: 363 QRKEDRKAHL 372
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 160/282 (56%), Gaps = 16/282 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + I+ L + FS G +LS +V D + +S GY +V F A++A++
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N LL +K + + +RD + +S NV++KNL ++ + + +F +G I S
Sbjct: 63 MNFDLLRNKPIRI----MWSQRDPSLRRSGIGNVFIKNLDKTIDNKAIYDTFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G SK +GFV+FE + A A+E +NG + K+ YVGK + ERE
Sbjct: 119 CKVATDDKGTSKGYGFVHFETEEAANNAIEKVNGMLLNGKKVYVGKFIPRKERE------ 172
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
+++ E A F N+Y+KN D +DDEKLK++F P+G ITS KVM G S+ GFV
Sbjct: 173 --KDLGEKAKLF--TNVYVKNFGDDVDDEKLKEMFDPYGKITSYKVMIKEDGKSKCFGFV 228
Query: 352 AFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQ 392
AF T E A A+ +NGK M K LYVA AQ+K +R+ L+
Sbjct: 229 AFETTEAAEAAVEALNGKDMGDGKALYVARAQKKAERQQELK 270
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 160/295 (54%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A A
Sbjct: 88 GIGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVATD-DKGTSKGYGFVHFETEEAANNA 146
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V R+ L + N+++KN +D + L + F +
Sbjct: 147 IEKVNGMLLNGKKVYVGKFIPRKEREKDLGEKAKLFTNVYVKNFGDDVDDEKLKEMFDPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+SK +GFV F+ E+A+ A+E LNG + D K +YV +K ER
Sbjct: 207 GKITSYKVMIKEDGKSKCFGFVAFETTEAAEAAVEALNGKDMGDGKALYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ +E L+K F +GTITSA VM D DG+
Sbjct: 267 QEL-KRKFEELKKKRQESVYGVNLYVKNLDDTIDDERLRKEFSLFGTITSAKVMTDEDGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F +A AV +NG+ K YV AQ+K +R+ L Q+ ++M
Sbjct: 326 SKGFGFVCFVAPHEATCAVTEMNGRVVGSKPLYVALAQRKEDRKAHLASQYMRHM 380
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/369 (55%), Positives = 284/369 (76%), Gaps = 2/369 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+L+ V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++ + +A+E
Sbjct: 36 SLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIEQ 95
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN+TP+ G+ R+M+S RDP+LRK G+GNIFIKNL ID+KAL +TFS FGNILS K+A
Sbjct: 96 LNYTPIKGRLCRIMWSQRDPALRKKGSGNIFIKNLHPDIDNKALFETFSVFGNILSSKIA 155
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--F 202
TD G+SKG+GFV F++E SA++AI+ LNGMLLN +++YV L ++ERD+++ ++K F
Sbjct: 156 TDETGKSKGFGFVHFEHESSAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHF 215
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN++ TT+E+ + F +YG + S+ + + DGK K FGFV+FE +DAA+AVE
Sbjct: 216 TNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEE 275
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LNG +F D+ +V +AQKK ER ELK Q+E + E K+QG NL++KNLDDSIDDEKL
Sbjct: 276 LNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEKL 335
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K+ F+P+G+ITS +VMR +G S+G GFV FSTPEEA++A+ E N ++V KPLYVA+AQ
Sbjct: 336 KEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 395
Query: 383 RKEDRRARL 391
RK+ RR++L
Sbjct: 396 RKDVRRSQL 404
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 162/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L ++ + L++ F+ G ++S ++ D T +S G+G+V+F + A A
Sbjct: 121 GSGNIFIKNLHPDIDNKALFETFSVFGNILSSKIATD-ETGKSKGFGFVHFEHESSAKEA 179
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ LN LNG+ I V RD L ++ A N+++KN++ + ++ F+ +
Sbjct: 180 IDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNINLETTDEEFNELFAKY 239
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GN+LS + +G+ KG+GFV F+ E A KA+E+LNG D+ ++V +K ER
Sbjct: 240 GNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEELNGTEFKDQTLFVSRAQKKYERMQ 299
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K +K+ N++VKNL +S +E L++ F YGTITS VMR +GKSK
Sbjct: 300 ELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEKLKEEFAPYGTITSVRVMRTDNGKSK 359
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 360 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 409
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 151/283 (53%), Gaps = 15/283 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
++++ LD + L+D FS G++ S +V D + S GY +V F++ E+ +KAI
Sbjct: 34 PASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAI 93
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN + + + +RD + K N+++KNL + L ++F +G I
Sbjct: 94 EQLNYTPIKGRLCRI----MWSQRDPALRKKGSGNIFIKNLHPDIDNKALFETFSVFGNI 149
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S+ + D GKSK FGFV+FE+ A A++ALNG + +E YV + ER+ +L+
Sbjct: 150 LSSKIATDETGKSKGFGFVHFEHESSAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQLE 209
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
K N+Y+KN++ DE+ +LF+ +G++ S + + G +G G
Sbjct: 210 E----------TKAHFTNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFG 259
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
FV F E+A++A+ E+NG + L+V+ AQ+K +R L+
Sbjct: 260 FVDFEKHEDAAKAVEELNGTEFKDQTLFVSRAQKKYERMQELK 302
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/380 (58%), Positives = 287/380 (75%), Gaps = 5/380 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A R
Sbjct: 13 YPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 73 ALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CK+ D +G S+GYGFV F+ EE+A+ AIEK+NGMLLN K+V+VG F+ ++ER +
Sbjct: 133 CKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDK 191
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR-DGDGKSKCFGFVNFENSDDAA 257
KF NVYVKN SE +E L+ F YG I SA VM DG GK K FGFV+FE+ + A
Sbjct: 192 MRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAE 251
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVEALNG K YVG+AQKK ER+ ELK +FE+ E +++QG NLY+KNLDD+I
Sbjct: 252 KAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKNLDDNI 311
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ F+ FG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++VV+KPLY
Sbjct: 312 DDERLRKEFAQFGTITSAKVMTE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLY 370
Query: 378 VALAQRKEDRRARLQVCLLQ 397
VALAQRKEDR+A L +Q
Sbjct: 371 VALAQRKEDRKAHLASQYMQ 390
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 172/295 (58%), Gaps = 24/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVR-VCRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +L+ ++ + LYD F+ G ++S + VC + +R GYG+V+F + A
Sbjct: 102 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHGSR---GYGFVHFETEEAARI 158
Query: 81 ALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSA 134
A+E +N LNGK + V + R L G N+++KN + I+ + L D F
Sbjct: 159 AIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRKFNNVYVKNFSEEINDETLRDMFEP 218
Query: 135 FGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+G I+S KV TD +G+ KG+GFV F++ E+A+KA+E LNG + K +YVG +K ER
Sbjct: 219 YGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIER 278
Query: 194 DTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E IN+ + N+YVKNL ++ +E L+K F ++GTITSA VM +G G+
Sbjct: 279 QAELKEKFERIRMERINRYQGVNLYVKNLDDNIDDERLRKEFAQFGTITSAKVMTEG-GR 337
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 338 SKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQRKEDRKAHLASQYMQRI 392
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N++ +LYV +L+ N+ D +L F Q G + S +V + RS G+G+V FS+ +EA
Sbjct: 295 NRYQGVNLYVKNLDDNIDDERLRKEFAQFGTITSAKVMTEGG--RSKGFGFVCFSSPEEA 352
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 353 TKAVTEMNGRIVVAKPLYVALAQR 376
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/417 (50%), Positives = 292/417 (70%), Gaps = 44/417 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 118 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVG+ + K++R ++ K+
Sbjct: 178 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 237
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN+ T+++ ++ F ++G +TS+ + RD +GK + FGFVNF + A +AV
Sbjct: 238 NFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTHEAAFKAV 297
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNGK F +E YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNLDD +DDE
Sbjct: 298 EDLNGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 357
Query: 321 KLKQLFSPFGSITSCKVMRDPS-------------------------------------- 342
KL+Q+F+ FG ITS KVMRD
Sbjct: 358 KLRQMFAEFGPITSAKVMRDTPQEGEEEVKDQEKDKENQKEAENEAESAESAEKKAEKKS 417
Query: 343 ----GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P++A++A+ EMN +M+ +KPLYVALAQRK+ R+++L+ +
Sbjct: 418 DKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASI 474
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/376 (59%), Positives = 294/376 (78%), Gaps = 4/376 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ L++ F+ +G VVSVRVCRD TRRSLGY YVNF N +A AL+
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSAVGVVVSVRVCRDNITRRSLGYAYVNFQNMADAECALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF LNG P+R+M+S RDPSLRKSG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFEILNGCPMRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D GQSKGYGFV FD E+SA ++IEK+NGMLLN K+V+VG F+ +++R+ E+ K+K F
Sbjct: 123 QDETGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN+ E+ +++L + F +YG+ITS VM DG S+ FGFV FE+ +A +AV
Sbjct: 183 TNVYIKNIDENVNDKELFEMFEKYGSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSE 242
Query: 263 LNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+GK+ + K +YVG+AQKK+ER+ ELK +FEQ E +++QG NLY+KNLDD+IDDE
Sbjct: 243 LHGKESPEGKTYYVGRAQKKAERQNELKRKFEQYKIERMNRYQGINLYVKNLDDTIDDEH 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS FG+ITS KVM D G S+G GFV FS+PEEA++A+ EMN ++V +KPLYVALA
Sbjct: 303 LRREFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEATKAVTEMNNRIVGTKPLYVALA 361
Query: 382 QRKEDRRARLQVCLLQ 397
QRKE+R+A L LQ
Sbjct: 362 QRKEERKAHLNAQYLQ 377
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 172/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D T +S GYG+V+F Q A ++
Sbjct: 88 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ETGQSKGYGFVHFDMEQSATQS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R ++ G N++IKN+D+ ++ K L + F +
Sbjct: 147 IEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLFTNVYIKNIDENVNDKELFEMFEKY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G+I SCKV +G S+G+GFV F++ + A+KA+ +L+G + K YVG +K ER
Sbjct: 207 GSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSELHGKESPEGKTYYVGRAQKKAERQ 266
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL ++ +E L++ F +GTITSA VM D DG+S
Sbjct: 267 NELKRKFEQYKIERMNRYQGINLYVKNLDDTIDDEHLRREFSVFGTITSAKVMMD-DGRS 325
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
K FGFV F + ++A +AV +N + K YV AQ+K ER+ L Q+ Q+
Sbjct: 326 KGFGFVCFSSPEEATKAVTEMNNRIVGTKPLYVALAQRKEERKAHLNAQYLQS 378
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/398 (53%), Positives = 285/398 (71%), Gaps = 24/398 (6%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST------RRS----- 64
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD RRS
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDXXXXXXXRWRRSHHPEL 62
Query: 65 ---------LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIF 115
+ + + + RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIF
Sbjct: 63 LPAPQPGEEVQFCARKIPRVEPSERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIF 122
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
IKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGM
Sbjct: 123 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGM 181
Query: 176 LLNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
LLND++V+VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++G S
Sbjct: 182 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 241
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
VM D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FE
Sbjct: 242 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFE 301
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
Q ++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV F
Sbjct: 302 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCF 360
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
S+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 361 SSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 398
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 117 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 174
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 175 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 234
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 235 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 294
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 295 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 352
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 353 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 406
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 163/311 (52%), Gaps = 36/311 (11%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL--------------- 147
+PS ++++ +L + L++ FS G ILS +V D
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDXXXXXXXRWRRSHHPE 61
Query: 148 ------NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
G+ + + E +++A++ +N ++ K V + +RD + KS
Sbjct: 62 LLPAPQPGEEVQFCARKIPRVEPSERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSG 117
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE + A RA+E
Sbjct: 118 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 176
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG +D++ +VG+ + + ERE EL + A +F N+YIKN + +DDE+
Sbjct: 177 KMNGMLLNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDER 226
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK LF FG S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV A
Sbjct: 227 LKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 286
Query: 382 QRKEDRRARLQ 392
Q+K +R+ L+
Sbjct: 287 QKKVERQTELK 297
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/434 (49%), Positives = 296/434 (68%), Gaps = 57/434 (13%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
AN N + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN+++A
Sbjct: 50 ANPN---SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 106
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 107 ADGERALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAF 166
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G SKGYGFV ++ ++A +AI+ +NGMLLN+K+V+VGH + K++R +
Sbjct: 167 GNILSCKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKKDRMS 226
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+YVKN+ TT+++ ++ F +YG ITSA + D GK + FGFVNF
Sbjct: 227 KFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRH 286
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DAA+AV+ LN F ++ YVG+AQKK ERE EL+ Q+E +E + K+QG NLY+KNL
Sbjct: 287 EDAAKAVDELNDLDFKGQKLYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNL 346
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPS------------------------------- 342
D IDDE+L+++F P+G+ITS KVMRD +
Sbjct: 347 ADEIDDEELRKIFEPYGAITSAKVMRDTTPLDKVEGAEKEDGEKKESESSAEDKEEEKKD 406
Query: 343 ---------------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
G S+G GFV FS P+EA++A+ E+N KM+ SKPLYVALA
Sbjct: 407 DADELAKKLDTVTIGGEKKVLGKSKGFGFVCFSNPDEATKAVTELNQKMIHSKPLYVALA 466
Query: 382 QRKEDRRARLQVCL 395
QRKE R+++L+ +
Sbjct: 467 QRKEVRKSQLEASI 480
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 155/290 (53%), Gaps = 15/290 (5%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++
Sbjct: 47 PTNANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 106
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E+LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 107 ADGERALEELNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 162
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V D G SK +GFV++E SD A +A++++NG ++K+ +VG K
Sbjct: 163 FAAFGNILSCKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKK 222
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
+R +FE+ K N+Y+KN+D D++ ++LF +G ITS + D
Sbjct: 223 DR----MSKFEEM------KANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQ 272
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G RG GFV F E+A++A+ E+N + LYV AQ+K +R L+
Sbjct: 273 GKVRGFGFVNFIRHEDAAKAVDELNDLDFKGQKLYVGRAQKKHEREEELR 322
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/374 (56%), Positives = 278/374 (74%), Gaps = 13/374 (3%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
++SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRRSL Y YVN+ N +A RAL
Sbjct: 9 SSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERAL 68
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN TP+ GK R+M+S RDPSLRKSG GN+FIKNLDK IDHKAL+DTFSAFGNILSCK
Sbjct: 69 DTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCK 128
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKS 200
V TD SKG+GFV ++ +ESA KAI K+NGM++N ++V+VG F +ER TE+
Sbjct: 129 VVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEV--- 185
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTNV+ KNLSE + L++ +YG IT+ +M D GKSK FGF NFE+++ A V
Sbjct: 186 KFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVV 245
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E NGK F K Y G+AQKK ERE ELKH FE K+QG NLYIKN+DDSID++
Sbjct: 246 ENENGKIFHGKPIYAGRAQKKIEREAELKHTFE-------TKYQGVNLYIKNIDDSIDND 298
Query: 321 KLKQLFSPFGSITSCKVMR-DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
KL+++FS FG+ITS VM+ D + S+G GFV ++ P+EA+RA+ EMNG+M+ +KPLYVA
Sbjct: 299 KLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVA 358
Query: 380 LAQRKEDRRARLQV 393
LAQRK+ RRA+L++
Sbjct: 359 LAQRKDIRRAQLEM 372
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 154/287 (53%), Gaps = 14/287 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + LYD F+ G ++S +V D S G+G+V++ + A +A
Sbjct: 96 GVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKA 154
Query: 82 LEMLNFTPLNGK-----PIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ +N +NG+ P + P+ K N+F KNL + + L + +G
Sbjct: 155 IAKVNGMMINGQKVFVGPFKSSKERGQPTEVK--FTNVFFKNLSEDVGPDQLKELLQQYG 212
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I + + D G+SKG+GF F++ E+A+ +E NG + + K +Y G +K ER+ E
Sbjct: 213 EITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAE 272
Query: 197 I-----NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNF 250
+ K + N+Y+KN+ +S + L++ F ++GTITSA+VM+D SK FGFV +
Sbjct: 273 LKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCY 332
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
D+A RAV +NG+ K YV AQ+K R +L+ Q +Q K
Sbjct: 333 TAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFK 379
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/400 (53%), Positives = 293/400 (73%), Gaps = 9/400 (2%)
Query: 2 AQVQAQGQNVNGG-----GANANQFGTTS--LYVGDLEANVTDSQLYDLFNQMGQVVSVR 54
A V Q NV+ G A+++Q TS LYVG+L +V ++ L+++F+ +GQV S+R
Sbjct: 21 APVATQETNVSSGNEGEDAADSSQLPDTSASLYVGELNPSVNEALLFEIFSPVGQVSSIR 80
Query: 55 VCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNI 114
VCRD T++SLGY YVNF ++ +A+E LN++ ++G+P R+M+S RDPSLR++G GNI
Sbjct: 81 VCRDAVTKKSLGYAYVNFHKLEDGEKAIEELNYSLIDGRPCRIMWSQRDPSLRRNGEGNI 140
Query: 115 FIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
FIKNL AID+KALHDTFSAFG ILSCKVATD G SK +GFV ++ E+A+ AIE +NG
Sbjct: 141 FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAAKAAIENVNG 200
Query: 175 MLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
MLLND++VYVG + K++R+++ K+ FTNVYVKN+ +EE+++K F YG ITS
Sbjct: 201 MLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRKLFEPYGKITSL 260
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+ +D +GKSK FGFVNFE+ + A +AVE LN K + ++ YVG+AQKK ER ELK Q+
Sbjct: 261 HLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLYVGRAQKKRERIEELKRQY 320
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
E E K+QG NL++KNLDDSID KL++ F PFG+ITS +VM D G S+G GFV
Sbjct: 321 EAARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVC 380
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
FS+PEEA++A+ EMN +M KPLYVALAQRK+ RR++L+
Sbjct: 381 FSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLE 420
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 162/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + L+D F+ G+++S +V D S +G+V++ A+ A A
Sbjct: 136 GEGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EQGNSKCFGFVHYETAEAAKAA 194
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V S +D + K+ N+++KN+D + + F +
Sbjct: 195 IENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRKLFEPY 254
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + D G+SKG+GFV F++ E+A KA+E+LN +N +++YVG +K+ER
Sbjct: 255 GKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLYVGRAQKKRERIE 314
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ + SK+ N++VKNL +S L++ F +GTITSA VM D GKSK
Sbjct: 315 ELKRQYEAARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSK 374
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F + ++A +A+ +N + F K YV AQ+K R +L+ Q +
Sbjct: 375 GFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLEQQIQ 424
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/344 (61%), Positives = 270/344 (78%), Gaps = 4/344 (1%)
Query: 50 VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKS 109
V+S+RVCRD+ TRRSL Y YVNF +A RAL+ +NF + GKPIR+M+S RDPSLRKS
Sbjct: 24 VLSIRVCRDMITRRSLFYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKS 83
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
G GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGY FV F+ +++A +AI
Sbjct: 84 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAI 142
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYG 227
EK+NGMLLND++V+VG F ++ER+ E+ K+K FTNVY+KN + +E L++ FG+YG
Sbjct: 143 EKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYG 202
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S VM D GKSK FGFV+FE ++A +AVE +NGK + K +VG+AQKK ER+ E
Sbjct: 203 KTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 262
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347
LK +FEQ +E ++QG NLYIKNLDD+IDDEKL++ FSPFGSITS KVM + G S+G
Sbjct: 263 LKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKG 321
Query: 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
GFV FS+PEEA++A+ EMNG++V SKPLYVALAQRKE+R+A L
Sbjct: 322 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHL 365
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 167/293 (56%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 84 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 141
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + F +
Sbjct: 142 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKY 201
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 202 GKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQKKVERQA 261
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I++ + N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+SK
Sbjct: 262 ELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSK 320
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 321 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 373
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 152/256 (59%), Gaps = 16/256 (6%)
Query: 138 ILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
+LS +V D+ +S Y +V F A++A++ +N ++ K + + +RD
Sbjct: 24 VLSIRVCRDMITRRSLFYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW----SQRDPS 79
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+ KS NV++KNL +S + L +F +G I S V+ D +G SK + FV+FE D A
Sbjct: 80 LRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAA 138
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
RA+E +NG +D++ +VG+ + + ERE EL + A +F N+YIKN D
Sbjct: 139 DRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK--------AKEF--TNVYIKNFGDD 188
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+DDE+LK+LF +G S KVM DP+G S+G GFV+F EEA++A+ EMNGK + K +
Sbjct: 189 MDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMV 248
Query: 377 YVALAQRKEDRRARLQ 392
+V AQ+K +R+A L+
Sbjct: 249 FVGRAQKKVERQAELK 264
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/420 (50%), Positives = 291/420 (69%), Gaps = 47/420 (11%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 124 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 183
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +N MLLN+K+VYVG+ + K++R ++ K+
Sbjct: 184 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKA 243
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+S T+E+ + F +YG +TS+ + RD +GKS+ FGFVNF + AA+AV
Sbjct: 244 NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAV 303
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNGK+F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D IDD+
Sbjct: 304 EELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDD 363
Query: 321 KLKQLFSPFGSITSCKVMRDPS-------------------------------------- 342
KL+Q+FS +G ITS KVMRD
Sbjct: 364 KLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTE 423
Query: 343 -------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P++A++A+ EMN +M+ KPLYVALAQRK+ R+ +L+ +
Sbjct: 424 KKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEASI 483
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/447 (48%), Positives = 297/447 (66%), Gaps = 61/447 (13%)
Query: 10 NVNGGGANANQFGTT------------SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR 57
NV G +A+ G T SLYVG+LE VT++ L++LF+ +G V S+RVCR
Sbjct: 35 NVEGAQGDADTAGPTPNSAVPQPQASASLYVGELEPQVTEAMLFELFSHIGPVASIRVCR 94
Query: 58 DLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIK 117
D TRRSLGY YVN++ + +ALE LN+T +NG+P R+M+S RDP+LRK+G GN+FIK
Sbjct: 95 DAVTRRSLGYAYVNYNTTSDGEKALEELNYTVINGRPCRIMWSQRDPALRKNGQGNVFIK 154
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD AID+KALHDTF+AFGNILSCKVA D +G SKGYGFV ++ +E+A +AI+ +NGMLL
Sbjct: 155 NLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAAQAIKHVNGMLL 214
Query: 178 NDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
N+K+VYVGH + K++R ++ K+ FTNVYVKN++ ++++ + F +YG +TS+ +
Sbjct: 215 NEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINSEASDDEFRDLFTKYGEVTSSSLA 274
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
RD +GKS+ FGFVNF + A++AVE LNGK F ++ YVG+AQKK ERE EL+ +E
Sbjct: 275 RDQEGKSRGFGFVNFTTHEAASQAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAA 334
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS------------- 342
+E A+K+QG NLYIKNL D +DDEKL+ +FS FG ITS KVMRD
Sbjct: 335 RQEKANKYQGVNLYIKNLSDDVDDEKLRAMFSEFGPITSAKVMRDSISEGEDEEKAEEET 394
Query: 343 ----------------------------------GISRGSGFVAFSTPEEASRALLEMNG 368
G S+G GFV FS PE+A++A+ +MN
Sbjct: 395 PAPEAEVKKEDSEADADSQEAADKKDAKKGDKKLGKSKGFGFVCFSNPEDATKAVADMNQ 454
Query: 369 KMVVSKPLYVALAQRKEDRRARLQVCL 395
+M+ +KPLYVALAQRK+ R+ +L+ +
Sbjct: 455 RMIDNKPLYVALAQRKDVRKNQLEQSI 481
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 164/343 (47%), Gaps = 74/343 (21%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ + AA+A
Sbjct: 147 GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAAAQA 205
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSL--------RKSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +N LN K +V H P K+ N+++KN++ D F+
Sbjct: 206 IKHVNGMLLNEK--KVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINSEASDDEFRDLFT 263
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+G + S +A D G+S+G+GFV F E+A +A+E+LNG + +YVG +K ER
Sbjct: 264 KYGEVTSSSLARDQEGKSRGFGFVNFTTHEAASQAVEELNGKDFRGQDLYVGRAQKKHER 323
Query: 194 DTEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-- 239
+ E+ NK + N+Y+KNLS+ +E L+ F E+G ITSA VMRD
Sbjct: 324 EEELRKSYEAARQEKANKYQGVNLYIKNLSDDVDDEKLRAMFSEFGPITSAKVMRDSISE 383
Query: 240 ---------------------------------------------GKSKCFGFVNFENSD 254
GKSK FGFV F N +
Sbjct: 384 GEDEEKAEEETPAPEAEVKKEDSEADADSQEAADKKDAKKGDKKLGKSKGFGFVCFSNPE 443
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
DA +AV +N + D+K YV AQ+K R K+Q EQ+++
Sbjct: 444 DATKAVADMNQRMIDNKPLYVALAQRKDVR----KNQLEQSIQ 482
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/369 (56%), Positives = 275/369 (74%), Gaps = 2/369 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+L+ VT+S LY+ F+ +G V S+RVCRD T+RSLGYGYVNF + RALE
Sbjct: 53 SLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALEE 112
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN+ + G R+M+S RDPSLR+SG+GNIFIKNLD AI++K LHDTFS+FG +LSCKVA
Sbjct: 113 LNYAEIKGVRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSFGKVLSCKVA 172
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SKF 202
TD NG SKG+GFV ++++E+AQ AIE +NGMLLN +++YVG L K++R++ + +
Sbjct: 173 TDENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYVGPHLAKKDRESRFQEMIKNY 232
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNV+VKN +TE++L++ F YG ITS + D +G +K FGFVNF DDA +AVEA
Sbjct: 233 TNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEA 292
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN K++ K YVG+AQKK+ER EL ++E + E K+Q NL+IKNLD+SIDD +L
Sbjct: 293 LNDKEYKGKPLYVGRAQKKNERVHELTKKYEADRLEKLQKYQSVNLFIKNLDESIDDARL 352
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ F PFG+ITS KVM D +G SRG GFV STPEEA++A+ EMN +MV +KPLYVALAQ
Sbjct: 353 EEEFKPFGTITSAKVMLDENGKSRGFGFVCLSTPEEATKAISEMNQRMVANKPLYVALAQ 412
Query: 383 RKEDRRARL 391
K RR++L
Sbjct: 413 PKAIRRSQL 421
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 152/291 (52%), Gaps = 21/291 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L+ + + L+D F+ G+V+S +V D S G+G+V++ + + A A
Sbjct: 138 GSGNIFIKNLDPAIENKTLHDTFSSFGKVLSCKVATD-ENGNSKGFGFVHYESDEAAQAA 196
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKS-------GAGNIFIKNLDKAIDHKALHDTFSA 134
+E +N LNG+ I V H R+S N+F+KN D L + F +
Sbjct: 197 IENINGMLLNGREIYVG-PHLAKKDRESRFQEMIKNYTNVFVKNFDTESTEDELRELFES 255
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
+G I S + D G +KG+GFV F + A KA+E LN K +YVG +K ER
Sbjct: 256 YGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALNDKEYKGKPLYVGRAQKKNERV 315
Query: 195 TEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K + N+++KNL ES + L++ F +GTITSA VM D +GKS
Sbjct: 316 HELTKKYEADRLEKLQKYQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLDENGKS 375
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
+ FGFV ++A +A+ +N + +K YV AQ K+ R +L Q +
Sbjct: 376 RGFGFVCLSTPEEATKAISEMNQRMVANKPLYVALAQPKAIRRSQLAQQIQ 426
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 17/192 (8%)
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAV 260
++YV L + TE DL + F G++ S V RD K S +G+VNF + RA+
Sbjct: 51 LASLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERAL 110
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN A+ K R + Q + +++ + N++IKNLD +I+++
Sbjct: 111 EELN------------YAEIKGVRCRLMWSQRDPSLRRSGS----GNIFIKNLDPAIENK 154
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L FS FG + SCKV D +G S+G GFV + + E A A+ +NG ++ + +YV
Sbjct: 155 TLHDTFSSFGKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYVGP 214
Query: 381 AQRKEDRRARLQ 392
K+DR +R Q
Sbjct: 215 HLAKKDRESRFQ 226
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ + +L++ +L+ ++ D++L + F G + S +V D +S G+G+V S +EA
Sbjct: 332 KYQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLD-ENGKSRGFGFVCLSTPEEAT 390
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKS 109
+A+ +N + KP+ V + ++R+S
Sbjct: 391 KAISEMNQRMVANKPLYVALAQPK-AIRRS 419
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/387 (55%), Positives = 285/387 (73%), Gaps = 11/387 (2%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGD+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVNF N +A R
Sbjct: 42 FHTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAER 101
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NFT + G P R+M+S RDPSLRKSG GNIF+KNLD +ID+KAL+DTFS FGNILS
Sbjct: 102 ALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILS 161
Query: 141 CKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
CKVA + G SKGYG+V ++ E+A +AI K+NGML+ +V+VG F ++Q+R +
Sbjct: 162 CKVAIEHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGQFQKRQDRP---DA 218
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD--GDGKSKCFGFVNFENSDDAA 257
+TN YVKN+ T+ DL K F +G + SAVVM+D ++ FGFVN+E SD A
Sbjct: 219 DDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAH 278
Query: 258 RAVEALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+AV+ALNGK + D E YVGKAQK+SERE EL+++FEQ E +K+QG NLY+KN
Sbjct: 279 KAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKN 338
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
LDD + D++L++ F+ G+ITS +VMRDP+G SRG GFV FSTPEEA++A+ EMNGK++
Sbjct: 339 LDDQLSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLIS 398
Query: 373 SKPLYVALAQRKEDRRARLQVCLLQCR 399
KP+YVALAQRKE RRA+L+ Q R
Sbjct: 399 GKPVYVALAQRKEVRRAQLEAQHAQQR 425
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/371 (54%), Positives = 285/371 (76%), Gaps = 2/371 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++ + A+
Sbjct: 41 SASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAI 100
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+ P+ G P R+M+S RDPS+RK G+GNIFIKNL ID+KALHDTFS FGNILSCK
Sbjct: 101 EKLNYAPIKGVPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKALHDTFSVFGNILSCK 160
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK- 201
+ATD G S+G+GFV F+++E+A++AI+ +NGMLLN ++VYV + K++R ++++++K
Sbjct: 161 IATDEAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKKDRQSKLDEAKA 220
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN+ T +E+ ++ F + G ITSA + +D +GK + FGFVN+EN +DAA+AV
Sbjct: 221 NFTNVYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAV 280
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN F + +VG+AQKK ER ELK Q+E E +K+QG NL++KNLDD+IDD+
Sbjct: 281 EELNETDFKGQTLHVGRAQKKHERLQELKKQYEAFRLEKLEKYQGVNLFVKNLDDTIDDQ 340
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+ E N ++V KPLYVA+
Sbjct: 341 KLEEEFAPYGTITSVKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 400
Query: 381 AQRKEDRRARL 391
AQRK+ RR++L
Sbjct: 401 AQRKDVRRSQL 411
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 153/290 (52%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L ++ + L+D F+ G ++S ++ D S G+G+V+F + + A A
Sbjct: 128 GSGNIFIKNLHPDIDNKALHDTFSVFGNILSCKIATD-EAGNSRGFGFVHFEDDEAAKEA 186
Query: 82 LEMLNFTPLNGKPIRVM--YSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNG+ + V S +D + K+ N+++KN+ + + F+
Sbjct: 187 IDAINGMLLNGQEVYVAQHVSKKDRQSKLDEAKANFTNVYVKNIHPDTGDEEFEEFFTKV 246
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + D G+ +G+GFV ++N A KA+E+LN + ++VG +K ER
Sbjct: 247 GPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELNETDFKGQTLHVGRAQKKHERLQ 306
Query: 196 EINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K + N++VKNL ++ ++ L++ F YGTITS VMR +GKSK
Sbjct: 307 ELKKQYEAFRLEKLEKYQGVNLFVKNLDDTIDDQKLEEEFAPYGTITSVKVMRSENGKSK 366
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 367 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 416
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 166/321 (51%), Gaps = 21/321 (6%)
Query: 76 QEAARALEMLNFTPLNGKPIR-VMYSHRDPSLRK--SGAGNIFIKNLDKAIDHKALHDTF 132
++ A LE LN + +P + V + +P +K + + ++++ LD ++ L+D F
Sbjct: 6 EKTAEQLEQLN---IQDEPQQNVAPASNEPESQKVETSSASLYVGELDPSVSEALLYDIF 62
Query: 133 SAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
S G++ S +V D + S GY +V F++ E+ + AIEKLN + V +
Sbjct: 63 SPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEKLNYAPIKG----VPCRIMWS 118
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + K N+++KNL + L +F +G I S + D G S+ FGFV+FE
Sbjct: 119 QRDPSMRKKGSGNIFIKNLHPDIDNKALHDTFSVFGNILSCKIATDEAGNSRGFGFVHFE 178
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ + A A++A+NG + +E YV + K +R+ +L EA F N+Y+K
Sbjct: 179 DDEAAKEAIDAINGMLLNGQEVYVAQHVSKKDRQSKLD--------EAKANF--TNVYVK 228
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N+ DE+ ++ F+ G ITS + +D G RG GFV + +A++A+ E+N
Sbjct: 229 NIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELNETDF 288
Query: 372 VSKPLYVALAQRKEDRRARLQ 392
+ L+V AQ+K +R L+
Sbjct: 289 KGQTLHVGRAQKKHERLQELK 309
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ + D +L + F G + SV+V R +S G+G+V FS +EA +A+
Sbjct: 326 VNLFVKNLDDTIDDQKLEEEFAPYGTITSVKVMRS-ENGKSKGFGFVCFSTPEEATKAIT 384
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 385 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 419
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/372 (56%), Positives = 285/372 (76%), Gaps = 2/372 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 48 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAI 107
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFSAFG ILSCK
Sbjct: 108 EELNYTPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 167
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+
Sbjct: 168 VATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKA 227
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ + TEE+ +K F YG ITS + +D DGKSK FGFVNFE D A +AV
Sbjct: 228 NFTNIYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAV 287
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLDDSID E
Sbjct: 288 EELNDKEINGQKIYVGRAQKKRERMEELKKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSE 347
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFG+ITS KVM D +G S+G GFV F+TPEEA++A+ EMN +MV +KPLYVAL
Sbjct: 348 KLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNQRMVNNKPLYVAL 407
Query: 381 AQRKEDRRARLQ 392
AQRK+ RR++L+
Sbjct: 408 AQRKDVRRSQLE 419
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 168/296 (56%), Gaps = 19/296 (6%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + G ++++ +L + + L+D F+ G+++S +V D +S +G+V++ A
Sbjct: 129 PSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-ELGQSKCFGFVHYETA 187
Query: 76 QEAARALEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALH 129
+ A A+E +N LN + + V S +D + K+ NI++KN+D A +
Sbjct: 188 EAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLAYTEEEFE 247
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
F+ +G I S + D +G+SKG+GFV F+ ++A KA+E+LN +N +++YVG +
Sbjct: 248 KLFAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAVEELNDKEINGQKIYVGRAQK 307
Query: 190 KQERDTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K+ER E+ K +K+ N++VKNL +S E L++ F +GTITSA VM D
Sbjct: 308 KRERMEELKKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSAKVMVD 367
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
GKSK FGFV F ++A +A+ +N + ++K YV AQ+K R +L+ Q +
Sbjct: 368 DAGKSKGFGFVCFTTPEEATKAITEMNQRMVNNKPLYVALAQRKDVRRSQLEQQIQ 423
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/377 (54%), Positives = 279/377 (74%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 47 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 106
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD++ID+KALHDTF+AFG+ILSCK
Sbjct: 107 EHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCK 166
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
V TD NG+S+G+ FV + E+A AI+ +NGMLLNDK+VYVGH + K+ER +++ ++
Sbjct: 167 VGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRA 226
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVY+KN+ T+ + + +G S + RD G SK FGFVN+EN + A +AV
Sbjct: 227 QFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEQGVSKGFGFVNYENHESAKQAV 286
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + K+ Y G+AQ KSERE ELK E+ E K G NLYIKNLDD DD+
Sbjct: 287 DELNEKEINGKKLYAGRAQTKSEREAELKKSHEEKRIENEAKSAGVNLYIKNLDDEWDDD 346
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F FG+ITS KVMRD SG+SRG GFV +S+P+EA++A+ EMNGKM+ +KPLYVAL
Sbjct: 347 RLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 406
Query: 381 AQRKEDRRARLQVCLLQ 397
AQRK+ RR L+ + Q
Sbjct: 407 AQRKDVRRQALESQIAQ 423
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 158/296 (53%), Gaps = 21/296 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F G ++S +V D +S G+ +V++S + A A
Sbjct: 134 GQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAA 192
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA-------GNIFIKNLDKAIDHKALHDTFSA 134
++ +N LN K + V + H R S N++IKN+D + D
Sbjct: 193 IKAVNGMLLNDKKVYVGH-HVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKP 251
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +S ++ D G SKG+GFV ++N ESA++A+++LN +N K++Y G K ER+
Sbjct: 252 FGPTISVALSRDEQGVSKGFGFVNYENHESAKQAVDELNEKEINGKKLYAGRAQTKSERE 311
Query: 195 TEINKSK------------FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ KS N+Y+KNL + ++ L+ F +GTITS+ VMRD G S
Sbjct: 312 AELKKSHEEKRIENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVS 371
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+ FGFV + + D+A +AV +NGK K YV AQ+K R L+ Q Q ++
Sbjct: 372 RGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQ 427
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/422 (51%), Positives = 294/422 (69%), Gaps = 49/422 (11%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 59 SASLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 118
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 119 EELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 178
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 179 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN+S TE+D ++ F +YG +TS+ + RD +GKS+ FGFVNF + AA+AV
Sbjct: 239 NFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAAKAV 298
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNLDD +DD+
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDD 358
Query: 321 KLKQLFSPFGSITSCKVMRDPS-------------------------------------- 342
KL+Q+FS FG ITS KVMRD
Sbjct: 359 KLRQMFSEFGPITSAKVMRDTPVENEDEKPAEEKKEEQEDKDKENKPEETKEGEEGAEKK 418
Query: 343 ---------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQV 393
G S+G GFV FS P++A++A+ EMN +MV +KPLYVALAQRK+ R+++L+
Sbjct: 419 AEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVSNKPLYVALAQRKDVRKSQLEA 478
Query: 394 CL 395
+
Sbjct: 479 SI 480
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/441 (49%), Positives = 290/441 (65%), Gaps = 59/441 (13%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G A NQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++
Sbjct: 35 GDAANNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYN 94
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N + RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+
Sbjct: 95 NTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFA 154
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFGNILSCKVA D SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R
Sbjct: 155 AFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR 214
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
++ K+ FTN+Y+KN+ T+++ + F +G ITSA + D DGKS+ FGFVN+
Sbjct: 215 QSKFEEMKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKSRGFGFVNYA 274
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N + A AV +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+K
Sbjct: 275 NHESAEAAVAEMNEKEVKTQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVK 334
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVM-----RDPS------------------------ 342
NL D IDDEKL+ LF+P+G+ITS KVM R P+
Sbjct: 335 NLTDDIDDEKLRDLFTPYGTITSAKVMRDAAERSPTPEAEDKETKGSEEKEVKTEETAEV 394
Query: 343 ----------------------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
G S+G GFV FS+P+EAS+A+ EMN +MV +K
Sbjct: 395 KTEETTEEKKTEEQGEASEEKKAEKKAFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNAK 454
Query: 375 PLYVALAQRKEDRRARLQVCL 395
PLYVALAQRK+ RR++L+ +
Sbjct: 455 PLYVALAQRKDVRRSQLEASI 475
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 161/307 (52%), Gaps = 22/307 (7%)
Query: 91 NGKPIRVMY-SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LN 148
NG P+ + D + + + ++++ LD ++ L++ FS+ G + S +V D +
Sbjct: 23 NGAPVEATSEAAGDAANNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVT 82
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVK 208
+S GY +V ++N ++A+E LN L+ K + +RD + K+ NV++K
Sbjct: 83 RRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIK 138
Query: 209 NLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF 268
NL + + L +F +G I S V +D SK +GFV++E ++ A A++ +NG
Sbjct: 139 NLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLL 198
Query: 269 DDKEWYVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQL 325
+DK+ +VG K +R+ E+K F N+YIKN+D I D++ + +
Sbjct: 199 NDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDLEITDDEFRVM 245
Query: 326 FSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385
F FG ITS + D G SRG GFV ++ E A A+ EMN K V ++ LYV AQ+K
Sbjct: 246 FEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKTQKLYVGRAQKKH 305
Query: 386 DRRARLQ 392
+R L+
Sbjct: 306 EREEELR 312
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/377 (54%), Positives = 279/377 (74%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD++ID+KALHDTF+AFG+ILSCK
Sbjct: 105 EHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCK 164
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
V TD NG+S+G+ FV + E+A AI+ +NGMLLNDK+VYVGH + K+ER +++ ++
Sbjct: 165 VGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRA 224
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVY+KN+ T+ + + +G S + RD G SK FGFVN+EN + A +AV
Sbjct: 225 QFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAV 284
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + K+ Y G+AQ KSERE ELK E+ E K G NLY+KNLDD DD+
Sbjct: 285 DELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDD 344
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F FG+ITS KVMRD SG+SRG GFV +S+P+EA++A+ EMNGKM+ +KPLYVAL
Sbjct: 345 RLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 404
Query: 381 AQRKEDRRARLQVCLLQ 397
AQRK+ RR L+ + Q
Sbjct: 405 AQRKDVRRQALESQIAQ 421
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 158/296 (53%), Gaps = 21/296 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F G ++S +V D +S G+ +V++S + A A
Sbjct: 132 GQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAA 190
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA-------GNIFIKNLDKAIDHKALHDTFSA 134
++ +N LN K + V + H R S N++IKN+D + D
Sbjct: 191 IKAVNGMLLNDKKVYVGH-HVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKP 249
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +S ++ D G SKG+GFV ++N ESA+KA+++LN +N K++Y G K ER+
Sbjct: 250 FGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSERE 309
Query: 195 TEINKSK------------FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ KS N+YVKNL + ++ L+ F +GTITS+ VMRD G S
Sbjct: 310 AELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVS 369
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+ FGFV + + D+A +AV +NGK K YV AQ+K R L+ Q Q ++
Sbjct: 370 RGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQ 425
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/425 (50%), Positives = 294/425 (69%), Gaps = 52/425 (12%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD +RRSLGY YVN++ + +AL
Sbjct: 60 SASLYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISRRSLGYAYVNYNTTADGEKAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+V+VGH + K++R ++ K+
Sbjct: 180 VAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTN+YVKN+ TEE+ ++ F ++G +TSA + RD + GKS+ FGFVNF N + AA A
Sbjct: 240 NFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATA 299
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LNGK F ++ YVG+AQKK ERE EL+ +E E A K+QG NLY+KNLDD IDD
Sbjct: 300 VDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARIEKASKYQGVNLYVKNLDDDIDD 359
Query: 320 EKLKQLFSPFGSITSCKVMRD-PS------------------------------------ 342
EKL++LF FGSITS KVMRD P+
Sbjct: 360 EKLRELFQSFGSITSAKVMRDTPAETAEAEEKKEKDEEKNKENKDTKETKETKKEGEAET 419
Query: 343 ------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
G S+G GFV F+ P+EA++A+ +MN +MV +KPLYVALAQRK+ R+++
Sbjct: 420 EEASAPKAKRSLGKSKGFGFVCFNNPDEATKAVSDMNQRMVNNKPLYVALAQRKDVRKSQ 479
Query: 391 LQVCL 395
L+ +
Sbjct: 480 LEASI 484
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/378 (54%), Positives = 280/378 (74%), Gaps = 7/378 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NG++ + YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALA E R+A L
Sbjct: 361 KPLYVALA---EGRKAIL 375
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 164/292 (56%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE+EL A + N+Y+KNL +D+++L+ LFS FG + S KVMRD
Sbjct: 176 RREREVEL----------GARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SRG GFV F EEA +A++ MNG+ V + LYV AQ++ +R+ L+
Sbjct: 226 VSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELK 277
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/382 (54%), Positives = 283/382 (74%), Gaps = 10/382 (2%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ + SLYVGDL ++++ L+DLF+++G ++S+R+CRD TR+SLGY YVNF N Q+A R
Sbjct: 3 YSSASLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAER 62
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+ + G PIR+M+S RDPS+RKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 63 ALDTLNYASVKGIPIRIMWSQRDPSIRKSGIGNIFIKNLDKSIDNKALYDTFSAFGNILS 122
Query: 141 CKVATDL--------NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
CKV N +S GYGFV F+ +E+A+KAI K+NGMLLN KQV+VG F++K E
Sbjct: 123 CKVCQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKINGMLLNGKQVFVGPFVKKTE 182
Query: 193 RDTEI-NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
R + N+ FTN+YVKNL S E++L + F ++G I +AVVMR +G SK FGF+NF
Sbjct: 183 RLKILSNEDSFTNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRGENGASKEFGFINFA 242
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A A++ +N K F +K+ +VG+AQKK+ER +LK F++ +E +K++G NLY+K
Sbjct: 243 DHASALIAIDEMNEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLNLYVK 302
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDDS+DDE+L+Q FS FG ITS KVM D + SRG GFV F TPE A++AL EM+G M+
Sbjct: 303 NLDDSVDDERLRQEFSKFGDITSAKVMSD-NKQSRGFGFVCFKTPEAANKALTEMSGHMI 361
Query: 372 VSKPLYVALAQRKEDRRARLQV 393
SKPLYV AQ KE RR++L+
Sbjct: 362 GSKPLYVNFAQPKELRRSQLEA 383
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 164/297 (55%), Gaps = 29/297 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR---------SLGYGYVNF 72
G ++++ +L+ ++ + LYD F+ G ++S +VC+ +T++ S GYG+V+F
Sbjct: 92 GIGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVCQ--ATKKGDNGGDNVESAGYGFVHF 149
Query: 73 SNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKA 127
+ A +A+ +N LNGK + V + + L+ + NI++KNLD ++D K
Sbjct: 150 ETQEAAEKAIAKINGMLLNGKQVFVGPFVKKTERLKILSNEDSFTNIYVKNLDASVDEKE 209
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L + FS FG I + V NG SK +GF+ F + SA AI+++N +K+++VG
Sbjct: 210 LSEVFSKFGEIQNAVVMRGENGASKEFGFINFADHASALIAIDEMNEKDFKNKKLFVGRA 269
Query: 188 LRKQER------------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
+K ER ++NK K N+YVKNL +S +E L++ F ++G ITSA VM
Sbjct: 270 QKKNERRAKLKEYFQKLKQEKVNKYKGLNLYVKNLDDSVDDERLRQEFSKFGDITSAKVM 329
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
D + +S+ FGFV F+ + A +A+ ++G K YV AQ K R +L+ Q+
Sbjct: 330 SD-NKQSRGFGFVCFKTPEAANKALTEMSGHMIGSKPLYVNFAQPKELRRSQLEAQY 385
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 106/196 (54%), Gaps = 18/196 (9%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
+N+ T++YV +L+A+V + +L ++F++ G++ + V R S +G++NF++
Sbjct: 188 SNEDSFTNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRG-ENGASKEFGFINFADHAS 246
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLR----------------KSGAGNIFIKNLDK 121
A A++ +N K + V + + R K N+++KNLD
Sbjct: 247 ALIAIDEMNEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLNLYVKNLDD 306
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
++D + L FS FG+I S KV +D N QS+G+GFV F E+A KA+ +++G ++ K
Sbjct: 307 SVDDERLRQEFSKFGDITSAKVMSD-NKQSRGFGFVCFKTPEAANKALTEMSGHMIGSKP 365
Query: 182 VYVGHFLRKQERDTEI 197
+YV K+ R +++
Sbjct: 366 LYVNFAQPKELRRSQL 381
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/385 (54%), Positives = 285/385 (74%), Gaps = 11/385 (2%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ F SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPIFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ AI +NGMLLND++V+VGHF +QER+
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQEREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEY-----GTITSAVVMRDGDGKSKCFGFV 248
E+ +FTN+YVKNL E LQ+ F ++ G + S VMRD G S+ FGFV
Sbjct: 182 ELGARAMEFTNIYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFV 241
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF--QGA 306
NFE ++A +AV +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ +++ +G
Sbjct: 242 NFEKHEEAQKAVMDMNGKEVRGRLLYVGRAQKRMERQNELKRKFEQMKQDRLNRYHVRGV 301
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
NLY+KNLDDSI+DEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EM
Sbjct: 302 NLYVKNLDDSINDEKLRKEFSPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEM 360
Query: 367 NGKMVVSKPLYVALAQRKEDRRARL 391
NG++V +KPLYVALAQRKE+R+A L
Sbjct: 361 NGRIVGTKPLYVALAQRKEERKAIL 385
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 165/302 (54%), Gaps = 32/302 (10%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +LE ++ + LYD F+ G ++S +V C D +R G+G+V+F + A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR---GFGFVHFETHEAAQL 153
Query: 81 ALEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSA 134
A+ +N LN + + V + R+ L R NI++KNL +D L + FS
Sbjct: 154 AISTMNGMLLNDRKVFVGHFKSRQEREAELGARAMEFTNIYVKNLQVDMDEWGLQELFSQ 213
Query: 135 F-----GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
F G +LS KV D +G S+G+GFV F+ E AQKA+ +NG + + +YVG +
Sbjct: 214 FDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGRLLYVGRAQK 273
Query: 190 KQERDTEINKSKF---------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
+ ER E+ K KF N+YVKNL +S +E L+K F YG ITSA V
Sbjct: 274 RMERQNEL-KRKFEQMKQDRLNRYHVRGVNLYVKNLDDSINDEKLRKEFSPYGMITSAKV 332
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
M +G G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q
Sbjct: 333 MTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQ 391
Query: 295 NM 296
+
Sbjct: 392 RL 393
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 159/287 (55%), Gaps = 21/287 (7%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS +V D+ +S GY ++ F A++A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ + + + +RD + KS N+++KNL +S + L +F +G I
Sbjct: 71 TMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D G S+ FGFV+FE + A A+ +NG +D++ +VG + + ERE EL
Sbjct: 127 SCKVVCDDHG-SRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQEREAEL-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPF-----GSITSCKVMRDPSGIS 345
A + N+Y+KNL +D+ L++LFS F G + S KVMRD SG S
Sbjct: 184 --------GARAMEFTNIYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHS 235
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
RG GFV F EEA +A+++MNGK V + LYV AQ++ +R+ L+
Sbjct: 236 RGFGFVNFEKHEEAQKAVMDMNGKEVRGRLLYVGRAQKRMERQNELK 282
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M + F A+LY+ +L + + L + FSP G I S +V RD + S G ++ F
Sbjct: 1 MNASGPIFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN +++ +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFEVIKGQPIRIMWSQRDPGLR 94
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/377 (54%), Positives = 277/377 (73%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 56 SASLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 115
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + +P R+M+S RDP+LRK+G GNIFIKNLD ID+KALHDTF+AFGNILSCK
Sbjct: 116 EHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSCK 175
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKS 200
VATD NG S+G+ FV ++ E+A AI+ +NGMLLNDK+VYVGH + K+ER +++ ++
Sbjct: 176 VATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEEQRA 235
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+++KNL T++DL+ F +G I SA + DG SK F FVN+ D A +AV
Sbjct: 236 KFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAV 295
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + K+ YVG+AQK++ER+ EL+ E+ E K G NLY+KN+DD DD+
Sbjct: 296 DELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKNIDDEWDDD 355
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F G+ITS KVMRD G SRG GFV FS P+EA+RA+ EMNGKM+ +KPLYV+L
Sbjct: 356 RLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSL 415
Query: 381 AQRKEDRRARLQVCLLQ 397
AQ+KE RR L+ + Q
Sbjct: 416 AQKKEVRRQALESQMQQ 432
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 157/292 (53%), Gaps = 21/292 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V D S G+ +V++ + A A
Sbjct: 143 GQGNIFIKNLDDKIDNKALHDTFAAFGNILSCKVATD-ENGNSRGFAFVHYETGEAADAA 201
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA-------GNIFIKNLDKAIDHKALHDTFSA 134
++ +N LN K + V + H R+S NIFIKNL+ K L D F
Sbjct: 202 IKSVNGMLLNDKKVYVGH-HISKKERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKP 260
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG I+S ++ +G SKG+ FV + ++A+KA+++LN +N K++YVG ++ ERD
Sbjct: 261 FGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERD 320
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ +K+ N+YVKN+ + ++ L+ F GTITSA VMRD G S
Sbjct: 321 EELRRMHEERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGAS 380
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ FGFV F D+A RAV+ +NGK K YV AQKK R L+ Q +Q
Sbjct: 381 RGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSLAQKKEVRRQALESQMQQ 432
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/377 (54%), Positives = 277/377 (73%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 56 SASLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 115
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + +P R+M+S RDP+LRK+G GNIFIKNLD ID+KALHDTF+AFGNILSCK
Sbjct: 116 EHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSCK 175
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKS 200
VATD NG S+G+ FV ++ E+A AI+ +NGMLLNDK+VYVGH + K+ER +++ ++
Sbjct: 176 VATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEEQRA 235
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+++KNL T++DL+ F +G I SA + DG SK F FVN+ D A +AV
Sbjct: 236 KFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAV 295
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + K+ YVG+AQK++ER+ EL+ E+ E K G NLY+KN+DD DD+
Sbjct: 296 DELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKNIDDEWDDD 355
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F G+ITS KVMRD G SRG GFV FS P+EA+RA+ EMNGKM+ +KPLYV+L
Sbjct: 356 RLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSL 415
Query: 381 AQRKEDRRARLQVCLLQ 397
AQ+KE RR L+ + Q
Sbjct: 416 AQKKEVRRQALESQMQQ 432
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 157/292 (53%), Gaps = 21/292 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V D S G+ +V++ + A A
Sbjct: 143 GQGNIFIKNLDDKIDNKALHDTFAAFGNILSCKVATD-ENGNSRGFAFVHYETGEAADAA 201
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA-------GNIFIKNLDKAIDHKALHDTFSA 134
++ +N LN K + V + H R+S NIFIKNL+ K L D F
Sbjct: 202 IKSVNGMLLNDKKVYVGH-HISKKERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKP 260
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG I+S ++ +G SKG+ FV + ++A+KA+++LN +N K++YVG ++ ERD
Sbjct: 261 FGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERD 320
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ +K+ N+YVKN+ + ++ L+ F GTITSA VMRD G S
Sbjct: 321 EELRRMHEERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGAS 380
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ FGFV F D+A RAV+ +NGK K YV AQKK R L+ Q +Q
Sbjct: 381 RGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSLAQKKEVRRQALESQMQQ 432
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/369 (55%), Positives = 278/369 (75%), Gaps = 4/369 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+RVCRD T RSLGY YVNF + +A R +
Sbjct: 111 SLYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTD 170
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N + GKP+R+M+S RDPSLRKSG GN+F+KNL+K+I++K+L+D FS+FGNILSCKV
Sbjct: 171 MNLYIIKGKPVRLMWSQRDPSLRKSGIGNVFVKNLEKSINNKSLYDAFSSFGNILSCKVI 230
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKF 202
TD NG SKGYGFV F++ ESA++AI+K+NG+LLND +++VGHF +++R++E+ +F
Sbjct: 231 TDDNG-SKGYGFVHFEHRESAERAIQKMNGILLNDLKIFVGHFKSRKDRESELGAQTREF 289
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E E+ L K F ++G S VMRD G+SK FGFVNF+ +DA A++
Sbjct: 290 TNVYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDN 349
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + ++ Y G+AQKK ER+ +L+ FEQ + ++QG NLYIKNLDD IDDE L
Sbjct: 350 MNGKELNGRQIYAGRAQKKLERQTQLQRHFEQLKQNRIVRYQGVNLYIKNLDDDIDDENL 409
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS FG+ITS KVM + +G S+G GFV FS PEEA+ A+ EMNG++V SKPLYVALAQ
Sbjct: 410 RKEFSSFGTITSAKVMMN-NGRSKGFGFVCFSAPEEATTAVTEMNGRLVASKPLYVALAQ 468
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 469 RKEERKAHL 477
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 166/296 (56%), Gaps = 27/296 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +LE ++ + LYD F+ G ++S +V D + S GYG+V+F + + A RA
Sbjct: 196 GIGNVFVKNLEKSINNKSLYDAFSSFGNILSCKVITDDNG--SKGYGFVHFEHRESAERA 253
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
++ +N LN I V + S +D R+S G N++IKN + +D L F
Sbjct: 254 IQKMNGILLNDLKIFVGHFKSRKD---RESELGAQTREFTNVYIKNFGEDMDEDRLSKIF 310
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
FG LS KV D G+SKG+GFV F E AQ AI+ +NG LN +Q+Y G +K E
Sbjct: 311 EKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAGRAQKKLE 370
Query: 193 RDTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
R T++ + + N+Y+KNL + +E+L+K F +GTITSA VM + +G
Sbjct: 371 RQTQLQRHFEQLKQNRIVRYQGVNLYIKNLDDDIDDENLRKEFSSFGTITSAKVMMN-NG 429
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+SK FGFV F ++A AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 430 RSKGFGFVCFSAPEEATTAVTEMNGRLVASKPLYVALAQRKEERKAHLANQYVQRM 485
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 159/290 (54%), Gaps = 16/290 (5%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ S ++++ +L + L++ FS G ILS +V D + +S GY +V F +
Sbjct: 102 PNSPNSTMASLYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHL 161
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A++ + +N ++ K V L +RD + KS NV+VKNL +S + L +
Sbjct: 162 ADAERVMTDMNLYIIKGKPVR----LMWSQRDPSLRKSGIGNVFVKNLEKSINNKSLYDA 217
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V+ D +G SK +GFV+FE+ + A RA++ +NG +D + +VG + +
Sbjct: 218 FSSFGNILSCKVITDDNG-SKGYGFVHFEHRESAERAIQKMNGILLNDLKIFVGHFKSRK 276
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
+RE EL A + N+YIKN + +D+++L ++F FG S KVMRD
Sbjct: 277 DRESEL----------GAQTREFTNVYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDDC 326
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G S+G GFV F E+A A+ MNGK + + +Y AQ+K +R+ +LQ
Sbjct: 327 GRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAGRAQKKLERQTQLQ 376
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/381 (54%), Positives = 283/381 (74%), Gaps = 5/381 (1%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GG N + SLYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVN+
Sbjct: 56 GGVAEN---SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNYH 112
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +A++ LN++ + G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFS
Sbjct: 113 KFEDGEKAIDELNYSLVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFS 172
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFG ILSCKVATD GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R
Sbjct: 173 AFGRILSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFVGKHVSKKDR 232
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+++ K+ +TN+YVKN+ TE++ ++ F YG ITS + +D DGKSK FGFVN+E
Sbjct: 233 ESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKSKGFGFVNYE 292
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
A AVEALN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL+IK
Sbjct: 293 EHKSAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFIK 352
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDD ID EKL++ F PFG+ITS KVM D +G S+G GFV FSTPEEA++A+ EMN +M+
Sbjct: 353 NLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMI 412
Query: 372 VSKPLYVALAQRKEDRRARLQ 392
KPLYVALAQRK+ RR++L+
Sbjct: 413 NGKPLYVALAQRKDVRRSQLE 433
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 163/296 (55%), Gaps = 19/296 (6%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + G ++++ +L + + L+D F+ G+++S +V D +S +G+V++
Sbjct: 143 PSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-DMGQSKCFGFVHYETG 201
Query: 76 QEAARALEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALH 129
+ A A+E +N LN + + V S +D + K+ NI++KN+D K
Sbjct: 202 EAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKFEEMKANYTNIYVKNIDLGFTEKEFE 261
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
+ F+ +G I S + D +G+SKG+GFV ++ +SA A+E LN +N +++YVG +
Sbjct: 262 ELFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVDAVEALNDKEINGQKIYVGRAQK 321
Query: 190 KQERDTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K+ER E+ K SK+ N+++KNL + E L++ F +GTITSA VM D
Sbjct: 322 KRERTEELKKQYEAIRLEKLSKYQGVNLFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVD 381
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
GKSK FGFV F ++A +A+ +N + + K YV AQ+K R +L+ Q +
Sbjct: 382 DAGKSKGFGFVCFSTPEEATKAITEMNQRMINGKPLYVALAQRKDVRRSQLEQQIQ 437
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/377 (54%), Positives = 282/377 (74%), Gaps = 2/377 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N ++ + SLYVGDL+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++
Sbjct: 28 NQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHD 87
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
A A+E LNFTP+ GK R+M+S RDPSLRK GAGNIFIKNL ID+KAL+DTFS FG
Sbjct: 88 AAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFG 147
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILS KVATD G+SKG+G+V F+ +ESA +AI+ LNGMLLN +++YVG L K+ER+++
Sbjct: 148 NILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESK 207
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KN++ TT+++ ++ ++G S V+ R +G++K FGFVNF N +
Sbjct: 208 FEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHE 267
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA + VE LN +F + YV +AQKK ER+ ELK Q+E E K+QG NL+IKNLD
Sbjct: 268 DAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLD 327
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
DSIDD+KL++ F+P+G+ITS KVM +G S+G GFV FSTPEEA++A+ E N ++V K
Sbjct: 328 DSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGK 387
Query: 375 PLYVALAQRKEDRRARL 391
PLYVA+AQRK+ RR++L
Sbjct: 388 PLYVAIAQRKDVRRSQL 404
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 152/286 (53%), Gaps = 21/286 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ +LD ++ L+D FS G + S +V D + S GY +V F++ ++A+ AI
Sbjct: 34 SASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAI 93
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
EKLN + K + +RD + K N+++KNL + L +F +G I
Sbjct: 94 EKLNFTPIKGKLCRI----MWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNI 149
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S+ V D GKSK FG+V+FE + A+ A++ALNG + +E YVG K ERE
Sbjct: 150 LSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFE 209
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+YIKN++ D++ ++L + FG S + R P G ++
Sbjct: 210 EMKANF-------------TNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENK 256
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G GFV F E+A + + E+N +PLYV AQ+K +R+ L+
Sbjct: 257 GFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELK 302
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 152/291 (52%), Gaps = 21/291 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L ++ + LYD F+ G ++S +V D T +S G+GYV+F + A+ A
Sbjct: 121 GAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEA 179
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLR-------KSGAGNIFIKNLDKAIDHKALHDTFSA 134
++ LN LNG+ I V H R K+ N++IKN++ K + +
Sbjct: 180 IDALNGMLLNGQEIYVG-PHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAK 238
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG S + G++KG+GFV F N E A K +E+LN + +YV +K ER
Sbjct: 239 FGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQ 298
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K +K+ N+++KNL +S ++ L++ F YGTITSA VM +GKS
Sbjct: 299 QELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKS 358
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
K FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 359 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 409
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 29/231 (12%)
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN--VYVKNLSESTTEEDLQKS 222
+K E+L + L DKQ E E N+S+ + +YV +L S +E L
Sbjct: 5 TEKTAEQLENLSLQDKQ----------EGTNEENQSETVSASLYVGDLDPSVSEAHLYDI 54
Query: 223 FGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
F G ++S V RD K+ + +VNF + D A A+E LN K +
Sbjct: 55 FSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRI----MW 110
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
S+R+ L+ K N++IKNL ID++ L FS FG+I S KV D
Sbjct: 111 SQRDPSLR------------KKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDE 158
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G S+G G+V F E AS A+ +NG ++ + +YV K++R ++ +
Sbjct: 159 TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFE 209
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L++ +L+ ++ D +L + F G + S +V +S G+G+V FS +EA +A+
Sbjct: 320 NLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMT-TENGKSKGFGFVCFSTPEEATKAITE 378
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 379 KNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 412
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/400 (53%), Positives = 290/400 (72%), Gaps = 9/400 (2%)
Query: 2 AQVQAQGQNVNGG-----GANANQFGTTS--LYVGDLEANVTDSQLYDLFNQMGQVVSVR 54
A V Q NV+ G A++ Q TS LYVG+L +V ++ L+++F+ +GQV S+R
Sbjct: 21 APVAIQETNVSSGNEGEDAADSTQLPDTSASLYVGELNPSVNEASLFEIFSPVGQVSSIR 80
Query: 55 VCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNI 114
VCRD T++SLGY YVNF ++ +A++ LN++ ++G+P R+M+S RDPSLR++G GNI
Sbjct: 81 VCRDAVTKKSLGYAYVNFHKLEDGEKAIDDLNYSLIDGRPCRIMWSQRDPSLRRNGEGNI 140
Query: 115 FIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
FIKNL AID+KALHDTFSAFG ILSCKVATD G SK +GFV ++ E+A+ AIE +NG
Sbjct: 141 FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAARAAIENVNG 200
Query: 175 MLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
MLLND++VYVG + K++R+++ K+ FTNVYVKN+ +EE+++ F YG ITS
Sbjct: 201 MLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRNLFEPYGKITSL 260
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+ +D +GKSK FGFVNFE+ + A +AVE LN K + + YVG+AQKK ER ELK Q+
Sbjct: 261 HLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLYVGRAQKKRERIEELKRQY 320
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
E E K+QG NL++KNLDDSID KL++ F PFG+ITS +VM D G S+G GFV
Sbjct: 321 ETARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVC 380
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
FS+PEEA++A+ EMN +M KPLYVALAQRK+ RR++L+
Sbjct: 381 FSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLE 420
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 162/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + L+D F+ G+++S +V D S +G+V++ A+ A A
Sbjct: 136 GEGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EQGNSKCFGFVHYETAEAARAA 194
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V S +D + K+ N+++KN+D + + + F +
Sbjct: 195 IENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRNLFEPY 254
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + D G+SKG+GFV F++ E+A KA+E+LN +N + +YVG +K+ER
Sbjct: 255 GKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLYVGRAQKKRERIE 314
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ + SK+ N++VKNL +S L++ F +GTITSA VM D GKSK
Sbjct: 315 ELKRQYETARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSK 374
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F + ++A +A+ +N + F K YV AQ+K R +L+ Q +
Sbjct: 375 GFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLEQQIQ 424
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/377 (54%), Positives = 279/377 (74%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 47 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 106
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD++ID+KALHDTF+AFG+ILSCK
Sbjct: 107 EHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCK 166
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
V TD NG+S+G+ FV + E+A AI+ +NGMLLNDK+VYVGH + K+ER +++ ++
Sbjct: 167 VGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRA 226
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVY+KN+ T+ + + +G S + RD G SK FGFVN+E+ + A +AV
Sbjct: 227 QFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYEHHESARKAV 286
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + K+ Y G+AQ KSERE ELK E+ E K G NLYIKNLDD DD+
Sbjct: 287 DELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYIKNLDDEWDDD 346
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F FG+ITS KVMRD SG+SRG GFV +S+P+EA++A+ EMNGKM+ +KPLYVAL
Sbjct: 347 RLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 406
Query: 381 AQRKEDRRARLQVCLLQ 397
AQRK+ RR L+ + Q
Sbjct: 407 AQRKDVRRQALESQIAQ 423
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 158/296 (53%), Gaps = 21/296 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F G ++S +V D +S G+ +V++S + A A
Sbjct: 134 GQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAA 192
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA-------GNIFIKNLDKAIDHKALHDTFSA 134
++ +N LN K + V + H R S N++IKN+D + D
Sbjct: 193 IKAVNGMLLNDKKVYVGH-HVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKP 251
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +S ++ D G SKG+GFV +++ ESA+KA+++LN +N K++Y G K ER+
Sbjct: 252 FGPTISVALSRDEKGVSKGFGFVNYEHHESARKAVDELNEKEVNGKKLYAGRAQTKSERE 311
Query: 195 TEINKSK------------FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ KS N+Y+KNL + ++ L+ F +GTITS+ VMRD G S
Sbjct: 312 AELKKSHEEKRLENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVS 371
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+ FGFV + + D+A +AV +NGK K YV AQ+K R L+ Q Q ++
Sbjct: 372 RGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQ 427
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/444 (48%), Positives = 298/444 (67%), Gaps = 54/444 (12%)
Query: 6 AQGQ-NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
AQG+ + A A+ + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRS
Sbjct: 29 AQGEVSTPTSAAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRS 88
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
LGY YVN++++++ +ALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID
Sbjct: 89 LGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAID 148
Query: 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
+KALHDTF+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+V
Sbjct: 149 NKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFV 208
Query: 185 GHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
GH + K+ER ++ K+ FTN+YVKN+ ++ED + F ++G ITSA + RD GKS
Sbjct: 209 GHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKS 268
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
+ FGFVN+ + A+ AV+ALN F ++ YVG+AQKK ERE EL+ Q+E E K
Sbjct: 269 RGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSK 328
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD--PS------------------ 342
+QG NLYIKNL+D +DDEKL+ +F+PFG+ITS KVMRD P+
Sbjct: 329 YQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDESKEES 388
Query: 343 -------------------------------GISRGSGFVAFSTPEEASRALLEMNGKMV 371
G S+G GFV FS P+EA++A+ EMN KM+
Sbjct: 389 EEAKDESKEDSDDKKDEKADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMI 448
Query: 372 VSKPLYVALAQRKEDRRARLQVCL 395
+KPLYVALAQRK+ R+ +L+ +
Sbjct: 449 ENKPLYVALAQRKDVRKNQLEATI 472
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/446 (49%), Positives = 293/446 (65%), Gaps = 56/446 (12%)
Query: 9 QNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYG 68
+ N G + Q + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY
Sbjct: 40 ETPNSAGPSTTQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYA 99
Query: 69 YVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKAL 128
YVN++N + RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KAL
Sbjct: 100 YVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKAL 159
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
HDTF+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH +
Sbjct: 160 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 219
Query: 189 RKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCF 245
K++R ++ K+ FTNVYVKNL + E+ ++ F +YG ITSA + RDG+ GKS+ F
Sbjct: 220 AKKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGF 279
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG 305
GFVNF + AA AVE LN K++ ++ YVG+AQKK ERE EL+ Q E E A K+QG
Sbjct: 280 GFVNFVKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQG 339
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG---------------------- 343
NLY+KNL D IDDEKL+ LF FG+ITS +VMRD +G
Sbjct: 340 VNLYVKNLTDDIDDEKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEA 399
Query: 344 ----------------------------ISRGSGF--VAFSTPEEASRALLEMNGKMVVS 373
+ + GF V FS P+EAS+A+ EMN +MV
Sbjct: 400 KKESGEEDSADKSDKVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNG 459
Query: 374 KPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVALAQRK+ R+++L+ +Q R
Sbjct: 460 KPLYVALAQRKDVRKSQLEAS-IQAR 484
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/382 (56%), Positives = 283/382 (74%), Gaps = 10/382 (2%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL +VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLN-----FTPLNGKPIRVMY-SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ + F GK +++ S RDPSLRKSG GN+FIKNLDK+ID+KAL+DT
Sbjct: 65 GEYGNLLFDRMDVCFHVAGGKAFTLLWFSERDPSLRKSGVGNVFIKNLDKSIDNKALYDT 124
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFGNILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++
Sbjct: 125 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRR 183
Query: 192 ERDTEIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
ER+ E+ K+K FTNVY+KN E +E L+++F +YG S VM D GKSK FGFV+
Sbjct: 184 EREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVS 243
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
FE +DA +AV+ +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLY
Sbjct: 244 FERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLY 303
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
IKNLDD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG+
Sbjct: 304 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGR 362
Query: 370 MVVSKPLYVALAQRKEDRRARL 391
+V SKPLYVALAQRKE+R+A L
Sbjct: 363 IVGSKPLYVALAQRKEERKAHL 384
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 170/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 103 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 160
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L +TFS +
Sbjct: 161 IEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKY 220
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A KA++ +NG +N K ++VG +K ER
Sbjct: 221 GKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQA 280
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I++ + N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+SK
Sbjct: 281 ELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSK 339
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 340 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 392
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 161/290 (55%), Gaps = 26/290 (8%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F Q+ +
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF------QQPAD 64
Query: 171 KLNGMLLNDKQVYVGH--------FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
G LL D+ H L ERD + KS NV++KNL +S + L +
Sbjct: 65 GEYGNLLFDRMDVCFHVAGGKAFTLLWFSERDPSLRKSGVGNVFIKNLDKSIDNKALYDT 124
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + +
Sbjct: 125 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRR 183
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
ERE EL A + N+YIKN + +DDE+LK+ FS +G S KVM DPS
Sbjct: 184 EREAEL----------GAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPS 233
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G S+G GFV+F E+A++A+ +MNGK V K ++V AQ+K +R+A L+
Sbjct: 234 GKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELK 283
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/376 (54%), Positives = 281/376 (74%), Gaps = 4/376 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++T++ LYD F G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLR+SG GN+FIKNLD++ID+KAL+DTFS+FGNILSCKV
Sbjct: 63 MNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVV 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D+NG SKG+GFV ++++ESAQ+AIEK+NGML+ DK+V+V F + +R E + F
Sbjct: 123 CDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHF 181
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITS-AVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
TN++VKNL +S + L K+F ++G + S V+ + G SKC GF++F+ D A AVE
Sbjct: 182 TNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVE 241
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
++ K+ + K+ Y G+AQKK+ER ELK ++E+ +E ++QG NLY+KNLDDSIDDE
Sbjct: 242 IMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEG 301
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F FG+ITS KV+ D +G S+G GFV FS+PEEA++A+ EMNG++ KPLYV LA
Sbjct: 302 LREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLA 361
Query: 382 QRKEDRRARLQVCLLQ 397
QRKEDR+A LQ +Q
Sbjct: 362 QRKEDRKAHLQQQYMQ 377
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 171/295 (57%), Gaps = 23/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D++ S G+G+V++ + + A RA
Sbjct: 88 GQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING--SKGFGFVHYESDESAQRA 145
Query: 82 LEMLNFTPLNGKPIRVM-YSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+E +N + K + V + R+ +R+ G N+F+KNL + D AL F F
Sbjct: 146 IEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQF 205
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G ++S KV D G SK +GF+ F + A+ A+E ++ + K++Y G +K ER
Sbjct: 206 GEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERS 265
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+E+ K+K+ N+YVKNL +S +E L+++F ++G ITSA V+ D +G+
Sbjct: 266 SEL-KAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNGR 324
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ F K YVG AQ+K +R+ L+ Q+ Q +
Sbjct: 325 SKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQYMQRV 379
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/381 (54%), Positives = 278/381 (72%), Gaps = 4/381 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLY+GDL +VT+S L++ F+ G V+S+RVCRD ++R SLGY YVNF +A R
Sbjct: 49 YSMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAER 108
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF ++G+P+R+M+S RDP+ R++G GNIFIKNLD+ ID+K+++DTFS FGNILS
Sbjct: 109 ALDTMNFETIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILS 168
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D +G S+GYGFV F+ EESAQ AIEK+NGMLL+ K+VYVG F + +R E+ +S
Sbjct: 169 CKVAADEDGSSRGYGFVHFETEESAQIAIEKVNGMLLSGKKVYVGKFQTRAQRLKELGES 228
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
K+TNV+VKN E +E L K F +YG ITSAVVM D DGK K FGFV + + D A +
Sbjct: 229 GLKYTNVFVKNFGEHLDQEKLTKMFSKYGEITSAVVMTDADGKPKGFGFVAYADPDAAQK 288
Query: 259 AVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
AV+ LN K + D + V +AQKKSER +LK ++E +E ++QG NLY+KN+D+
Sbjct: 289 AVDDLNEKTLEGTDLKLSVCRAQKKSERTADLKRKYEALKQERVQRYQGVNLYVKNIDEE 348
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+ DE L+ F+ FG+ITS KVM D +G S+G GFV F PEEA+ A+ EMN KM+ SKPL
Sbjct: 349 LTDEGLRAHFASFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMMGSKPL 408
Query: 377 YVALAQRKEDRRARLQVCLLQ 397
YVALAQRKEDRRA+L +Q
Sbjct: 409 YVALAQRKEDRRAQLASQYMQ 429
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 163/299 (54%), Gaps = 21/299 (7%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F +
Sbjct: 134 ARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVAAD-EDGSSRGYGFVHFETEES 192
Query: 78 AARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDT 131
A A+E +N L+GK + V + R L++ G N+F+KN + +D + L
Sbjct: 193 AQIAIEKVNGMLLSGKKVYVGKFQTRAQRLKELGESGLKYTNVFVKNFGEHLDQEKLTKM 252
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLR 189
FS +G I S V TD +G+ KG+GFV + + ++AQKA++ LN L D ++ V +
Sbjct: 253 FSKYGEITSAVVMTDADGKPKGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKLSVCRAQK 312
Query: 190 KQERDTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K ER + + + + N+YVKN+ E T+E L+ F +GTITSA VM D
Sbjct: 313 KSERTADLKRKYEALKQERVQRYQGVNLYVKNIDEELTDEGLRAHFASFGTITSAKVMVD 372
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+G+SK FGFV FE ++A AV +N K K YV AQ+K +R +L Q+ Q +
Sbjct: 373 ENGRSKGFGFVCFEKPEEATAAVTEMNSKMMGSKPLYVALAQRKEDRRAQLASQYMQKL 431
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/394 (54%), Positives = 286/394 (72%), Gaps = 10/394 (2%)
Query: 8 GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 67
GQN G + + SLYVGDL +V +S L++ F+ G V+S+RVCRD +TR SLGY
Sbjct: 21 GQNQTG-----SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGY 75
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
YVNF +A RA++ +NF L+GKP+R+M+S RDP++R+SGAGNIFIKNLDK ID+K+
Sbjct: 76 AYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKS 135
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
++DTFS FGNILSCKVA D +G SKGYGFV F+ EE+AQ AI+K+NGMLL K+V+VG F
Sbjct: 136 IYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKF 195
Query: 188 LRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+ +R+ E+ ++ +FTNVYVKN + +E L+K F ++G ITS VM +GKSK F
Sbjct: 196 QPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGF 254
Query: 246 GFVNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
GFV F N ++A AV+AL+ + D + +V +AQKKSER ELK + EQ+ E K+
Sbjct: 255 GFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKY 314
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
QG NLY+KNLD+++DD+ LK+ F +G+ITS KVM D +G S+G GFV F PEEA+ A+
Sbjct: 315 QGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAV 374
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
EMN KMV SKPLYVA+AQRKEDRRA+L +Q
Sbjct: 375 TEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQ 408
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 159/295 (53%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A A
Sbjct: 118 GAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNA 176
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
++ +N L GK + V + R R+ G N+++KN + + L F+ F
Sbjct: 177 IQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKF 236
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLRKQER 193
GNI SC+V T + G+SKG+GFV F N E A+ A++ L+ + D +++V +K ER
Sbjct: 237 GNITSCEVMT-VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSER 295
Query: 194 DTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K + N+YVKNL E+ ++ L+K F YG ITSA VM D +G+
Sbjct: 296 HAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGR 355
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV FE ++A AV +N K K YV AQ+K +R +L Q+ Q +
Sbjct: 356 SKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRL 410
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/423 (50%), Positives = 293/423 (69%), Gaps = 47/423 (11%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 DELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 180 VAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTN+YVKN+ T++D + F ++G +TS+ + RD + GKS+ FGFVNF + +DA++A
Sbjct: 240 NFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VE LN K+F + YVG+AQKK ERE EL+ +E +E A K+QG NLYIKNLDD +DD
Sbjct: 300 VEELNEKEFHGQNLYVGRAQKKHEREEELRRSYEAARQEKASKYQGVNLYIKNLDDEVDD 359
Query: 320 EKLKQLFSPFGSITSCKVMR--------DPS----------------------------- 342
+KL+QLFS FG ITS KVMR +P
Sbjct: 360 DKLRQLFSEFGPITSAKVMRETLAEGADEPEAKDAADAKENVKEDEEAAKTEGDEGDAKA 419
Query: 343 ------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLL 396
G S+G GFV F P++A++A+ EMN +MV KPLYVALAQRK+ R+ +L+ +
Sbjct: 420 DKKPKLGKSKGFGFVCFGNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRKNQLEAS-I 478
Query: 397 QCR 399
Q R
Sbjct: 479 QAR 481
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/394 (54%), Positives = 285/394 (72%), Gaps = 10/394 (2%)
Query: 8 GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 67
GQN G + + SLYVGDL +V +S L++ F+ G V+S+RVCRD +TR SLGY
Sbjct: 21 GQNQTG-----SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGY 75
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
YVNF +A RA++ +NF L+GKP+R+M+S RDP++R+SGAGNIFIKNLDK ID+K+
Sbjct: 76 AYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKS 135
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
++DTFS FGNILSCKVA D +G SKGYGFV F+ EE+AQ AI+K+NGMLL K+V+VG F
Sbjct: 136 IYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKF 195
Query: 188 LRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+ +R+ E+ ++ +FTNVYVKN + +E L+K F ++G ITS VM +GKSK F
Sbjct: 196 QPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTV-EGKSKGF 254
Query: 246 GFVNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
GFV F N ++A AV+AL+ + D + +V +AQKKSER ELK + EQ+ E K+
Sbjct: 255 GFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKY 314
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
QG NLY+KNLD+++DD+ LK+ F +G+ITS KVM D +G S+G GFV F PEEA+ A+
Sbjct: 315 QGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAV 374
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
EMN KMV SKPLYVA+ QRKEDRRA+L +Q
Sbjct: 375 TEMNSKMVCSKPLYVAIGQRKEDRRAQLASQYMQ 408
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/388 (54%), Positives = 278/388 (71%), Gaps = 32/388 (8%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK---------- 167
Query: 191 QERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250
KN E T++ L++ F +YGTITS VM DGKS+ FGFV F
Sbjct: 168 -----------------KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAF 210
Query: 251 ENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
E+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG NLY
Sbjct: 211 EDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLY 270
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMNG+
Sbjct: 271 VKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGR 329
Query: 370 MVVSKPLYVALAQRKEDRRARLQVCLLQ 397
++V+KPLYVALAQRKEDR+A L +Q
Sbjct: 330 IIVTKPLYVALAQRKEDRKAHLASQYMQ 357
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 171/323 (52%), Gaps = 56/323 (17%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
++ +N LNGK KN + + L + F +G I S
Sbjct: 156 IDRVNGMLLNGK-----------------------KNFGEDMTDDKLKEMFEKYGTITSH 192
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEI--- 197
KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER E+
Sbjct: 193 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 252
Query: 198 ---------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+SK FGFV
Sbjct: 253 FEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFV 311
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q + AN+
Sbjct: 312 CFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL---------ANM 362
Query: 309 YIKNLDDSIDDEKLKQLFSPFGS 331
+ +++ Q+F P G+
Sbjct: 363 RM---------QQMGQIFQPGGA 376
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/376 (54%), Positives = 281/376 (74%), Gaps = 4/376 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++T++ LYD F G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLR+SG GN+FIKNLD++ID+KAL+DTFS+FGNILSCKV
Sbjct: 63 MNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVV 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D+NG SKG+GFV ++++ESAQ+AIEK+NGML+ DK+V+V F + +R E + F
Sbjct: 123 CDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHF 181
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITS-AVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
TN++VKNL +S + L ++F ++G + S V+ + G SKC GF++F+ D A AVE
Sbjct: 182 TNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVE 241
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
++ K+ + K+ Y G+AQKK+ER ELK ++E+ +E ++QG NLY+KNLDDSIDDE
Sbjct: 242 IMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEG 301
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F FG+ITS KV+ D +G S+G GFV FS+PEEA++A+ EMNG++ KPLYV LA
Sbjct: 302 LREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLA 361
Query: 382 QRKEDRRARLQVCLLQ 397
QRKEDR+A LQ +Q
Sbjct: 362 QRKEDRKAHLQQQYMQ 377
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 172/295 (58%), Gaps = 23/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D++ S G+G+V++ + + A RA
Sbjct: 88 GQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING--SKGFGFVHYESDESAQRA 145
Query: 82 LEMLNFTPLNGKPIRVM-YSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+E +N + K + V + R+ +R+ G N+F+KNL + D AL + F F
Sbjct: 146 IEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLENFEQF 205
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G ++S KV D G SK +GF+ F + A+ A+E ++ + K++Y G +K ER
Sbjct: 206 GEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERS 265
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+E+ K+K+ N+YVKNL +S +E L+++F ++G ITSA V+ D +G+
Sbjct: 266 SEL-KAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNGR 324
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ F K YVG AQ+K +R+ L+ Q+ Q +
Sbjct: 325 SKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQYMQRV 379
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 275/372 (73%), Gaps = 2/372 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ LY++F+ +GQV S+RVCRD T++SLGY YVN+ ++ RAL
Sbjct: 50 SASLYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDGERAL 109
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ ++G+P R+M+S RDPSLR++G GNIFIKNL ID+KALHDTFSAFG ILSCK
Sbjct: 110 EQLNYSLIDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPDIDNKALHDTFSAFGRILSCK 169
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD +G+SK +GFV ++ E+A AIE +NGM LND++V+VG + K++R + K+
Sbjct: 170 VATDEHGRSKCFGFVHYETAEAADAAIENVNGMSLNDREVFVGKHISKKDRVAKFEEMKA 229
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNV+VKN TE +L F YG ITS +D +GKSK FGF+NFEN D A +AV
Sbjct: 230 NFTNVFVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDAAVKAV 289
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLDDS+ E
Sbjct: 290 EELNDKEVNGQKIYVGRAQKKRERIEELKKQYETTRLEKLSKYQGVNLFVKNLDDSLTSE 349
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L++ F PFG+ITS KVM D +G S+G GFV FS PEEA++A+ EMN +MV+ KPLYVAL
Sbjct: 350 MLEEEFKPFGTITSAKVMVDETGKSKGFGFVCFSAPEEATKAITEMNQRMVLGKPLYVAL 409
Query: 381 AQRKEDRRARLQ 392
AQRK+ RR++L+
Sbjct: 410 AQRKDVRRSQLE 421
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 160/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L ++ + L+D F+ G+++S +V D RS +G+V++ A+ A A
Sbjct: 137 GDGNIFIKNLHPDIDNKALHDTFSAFGRILSCKVATD-EHGRSKCFGFVHYETAEAADAA 195
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V S +D + K+ N+F+KN L F +
Sbjct: 196 IENVNGMSLNDREVFVGKHISKKDRVAKFEEMKANFTNVFVKNFGSDFTEAELAAMFEPY 255
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S D G+SKG+GF+ F+N ++A KA+E+LN +N +++YVG +K+ER
Sbjct: 256 GKITSLYFEKDSEGKSKGFGFINFENHDAAVKAVEELNDKEVNGQKIYVGRAQKKRERIE 315
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K SK+ N++VKNL +S T E L++ F +GTITSA VM D GKSK
Sbjct: 316 ELKKQYETTRLEKLSKYQGVNLFVKNLDDSLTSEMLEEEFKPFGTITSAKVMVDETGKSK 375
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ +N + K YV AQ+K R +L+ Q +
Sbjct: 376 GFGFVCFSAPEEATKAITEMNQRMVLGKPLYVALAQRKDVRRSQLEQQIQ 425
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/388 (55%), Positives = 277/388 (71%), Gaps = 32/388 (8%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL A++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+K+NGMLLN K
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK---------- 167
Query: 191 QERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250
KN E T++ L++ F +YGTITS VM DGKS+ FGFV F
Sbjct: 168 -----------------KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAF 210
Query: 251 ENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
E+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E ++QG NLY
Sbjct: 211 EDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLY 270
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLDDSI+DE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMNG+
Sbjct: 271 VKNLDDSINDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMNGR 329
Query: 370 MVVSKPLYVALAQRKEDRRARLQVCLLQ 397
++V+KPLYVALAQRKEDR+A L +Q
Sbjct: 330 IIVTKPLYVALAQRKEDRKAHLASQYMQ 357
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 171/324 (52%), Gaps = 58/324 (17%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
++ +N LNGK KN + + L + F +G I S
Sbjct: 156 IDKVNGMLLNGK-----------------------KNFGEDMTDDKLKEMFEKYGTITSH 192
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINKS 200
KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER E+ K
Sbjct: 193 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQEL-KR 251
Query: 201 KF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
KF N+YVKNL +S +E L++ F +GTITSA VM + DG+SK FGF
Sbjct: 252 KFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMME-DGRSKGFGF 310
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
V F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q + AN
Sbjct: 311 VCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL---------AN 361
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGS 331
+ + +++ Q+F P G+
Sbjct: 362 MRM---------QQMGQMFPPGGA 376
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/388 (54%), Positives = 277/388 (71%), Gaps = 32/388 (8%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK---------- 167
Query: 191 QERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250
KN E T++ L+ F +YGTITS VM DGKS+ FGFV F
Sbjct: 168 -----------------KNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAF 210
Query: 251 ENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
E+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG NLY
Sbjct: 211 EDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLY 270
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMNG+
Sbjct: 271 VKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGR 329
Query: 370 MVVSKPLYVALAQRKEDRRARLQVCLLQ 397
++V+KPLYVALAQRKEDR+A L +Q
Sbjct: 330 IIVTKPLYVALAQRKEDRKAHLASQYMQ 357
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 171/323 (52%), Gaps = 56/323 (17%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
++ +N LNGK KN + + L D F +G I S
Sbjct: 156 IDRVNGMLLNGK-----------------------KNFGEDMTDDKLKDMFEKYGTITSH 192
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEI--- 197
KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER E+
Sbjct: 193 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 252
Query: 198 ---------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+SK FGFV
Sbjct: 253 FEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFV 311
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q + AN+
Sbjct: 312 CFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL---------ANM 362
Query: 309 YIKNLDDSIDDEKLKQLFSPFGS 331
+ +++ Q+F P G+
Sbjct: 363 RM---------QQMGQIFQPGGA 376
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 282/372 (75%), Gaps = 2/372 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 51 TASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAI 110
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++P+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFS FG ILSCK
Sbjct: 111 EELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCK 170
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+
Sbjct: 171 VATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKA 230
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ +EEDL+K F YG ITS + +D +GKSK FGFVN+E + A +AV
Sbjct: 231 NFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAV 290
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL+IKNLDD+ID E
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSE 350
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFG+ITS +VM D +G S+G GFV FS+PEEA++A+ EMN +M KPLYVAL
Sbjct: 351 KLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVAL 410
Query: 381 AQRKEDRRARLQ 392
AQRK+ RR++L+
Sbjct: 411 AQRKDVRRSQLE 422
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 167/296 (56%), Gaps = 19/296 (6%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + G ++++ +L + + L+D F+ G+++S +V D +S +G+V++ A
Sbjct: 132 PSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATD-DMGQSKCFGFVHYETA 190
Query: 76 QEAARALEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALH 129
+ A A+E +N LN + + V S +D + K+ NI++KN+D + L
Sbjct: 191 EAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLK 250
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
F+ +G I S + D G+SKG+GFV ++ E+A KA+E+LN +N +++YVG +
Sbjct: 251 KLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQK 310
Query: 190 KQERDTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K+ER E+ K SK+ N+++KNL ++ E L++ F +GTITSA VM D
Sbjct: 311 KRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVD 370
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
GKSK FGFV F + ++A +A+ +N + F K YV AQ+K R +L+ Q +
Sbjct: 371 ETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQLEQQIQ 426
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/394 (56%), Positives = 285/394 (72%), Gaps = 10/394 (2%)
Query: 8 GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 67
GQN G + + SLYVGDL +V +S L++ F+ G V+S+RVCRD +TR SLGY
Sbjct: 21 GQNPTG-----SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGY 75
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
YVNF +A RA++ +NF L+GKP+R+M+S RDP++R+SGAGNIFIKNLDK ID+K+
Sbjct: 76 AYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKS 135
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
++DTFS FGNILSCKVA D G SKGYGFV F+ EE+AQ AI+K+NGMLL K+V+VG F
Sbjct: 136 IYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKF 195
Query: 188 LRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+ +R+ E+ ++ K+TNVYVKN + +E L+K F +YGTITS VM DGKSK F
Sbjct: 196 QPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSCDVMTS-DGKSKGF 254
Query: 246 GFVNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
GFV F ++A AV+ALN + D + +V +AQKKSER ELK + EQ+ E K+
Sbjct: 255 GFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKY 314
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
QG NLY+KNLD+S+DDE LK+ F FG+ITS KVM D +G S+G GFV F PEEA+ A+
Sbjct: 315 QGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAV 374
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
EMN KMV SKPLYVALAQRKEDRRA+L +Q
Sbjct: 375 TEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQ 408
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 158/295 (53%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A A
Sbjct: 118 GAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAID-EEGSSKGYGFVHFETEEAAQNA 176
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
++ +N L GK + V + R R+ G N+++KN + ++L F+ +
Sbjct: 177 IQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKY 236
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLRKQER 193
G I SC V T +G+SKG+GFV F E A+ A++ LN + +D +++V +K ER
Sbjct: 237 GTITSCDVMTS-DGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSER 295
Query: 194 DTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K + N+YVKNL ES +E L+K F +G ITSA VM D +G+
Sbjct: 296 HAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGR 355
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV FE ++A AV +N K K YV AQ+K +R +L Q+ Q +
Sbjct: 356 SKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRL 410
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/389 (53%), Positives = 286/389 (73%), Gaps = 7/389 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ F SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGFPLASLYVGDLHPDVTEAMLYEKFSLAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A AL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+++ID+KAL+DTFS F
Sbjct: 63 ADAELALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEESIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLN+++V+V HF +QER+
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETREAAQQAISTMNGMLLNNRKVFVSHFKSRQEREA 181
Query: 196 E--INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E + +FTNVYVKNL E+ L++ F ++G S VMRD G S+ FGFVNFE
Sbjct: 182 ELGVRAMEFTNVYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK---FQGANLYI 310
++A +AV +NGK+ + YVG+AQK +ER+ ELK +F+Q + D+ +QG NLY+
Sbjct: 242 EEAQKAVMDMNGKEVRGQLLYVGRAQKWAERQNELKRKFQQMKQMKQDRLNHYQGVNLYV 301
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNLDDSID+E+L++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG +
Sbjct: 302 KNLDDSIDNERLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGCI 360
Query: 371 VVSKPLYVALAQRKEDRRARLQVCLLQCR 399
+ +KPLYVALAQRK++R+A L +Q R
Sbjct: 361 LGTKPLYVALAQRKDERKAILTNQFMQQR 389
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/449 (47%), Positives = 293/449 (65%), Gaps = 55/449 (12%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
+A QA+ NQ + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD
Sbjct: 26 VAAAQAEAPTPTSAAPAHNQ-NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAV 84
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
TRRSLGY YVN++++++ +ALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD
Sbjct: 85 TRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLD 144
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
AID+KALHDTF+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K
Sbjct: 145 HAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK 204
Query: 181 QVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
+V+VGH + K+ER ++ K+ FTN+YVKN+ ++E+ ++ F ++G ITSA + RD
Sbjct: 205 KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDE 264
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
GKS+ FGFVN+ + A+ AV+ALN F ++ YVG+AQKK ERE EL+ Q+E E
Sbjct: 265 QGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLE 324
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR------------ 346
K+QG NLYIKNL+D +DDEKL+ +F+PFG+ITS KVMRD R
Sbjct: 325 KQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAERSETPGDEKKEEA 384
Query: 347 ----------------------------------------GSGFVAFSTPEEASRALLEM 366
G GFV FS P+EA++A+ EM
Sbjct: 385 KEESEKTEESNEGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEM 444
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQVCL 395
N KM+ KPLYVALAQRK+ R+ +L+ +
Sbjct: 445 NQKMIEGKPLYVALAQRKDVRKNQLEATI 473
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/379 (56%), Positives = 283/379 (74%), Gaps = 5/379 (1%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
SLYV DL +VT+ L+ F+ G V+SVRVCRD+ TRRSLGY YVNF +A RA
Sbjct: 8 AVASLYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERA 67
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ +NF + G+PIR+ + RDPSLRKSG GN+FIK LDK+ID+KAL+DTFSAFGNI SC
Sbjct: 68 LDTMNFDIIKGRPIRITWYQRDPSLRKSGVGNVFIKKLDKSIDNKALYDTFSAFGNISSC 127
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINK 199
K+ D +G S+GYGFV F+ +E+A+ AIEK+NGMLLN K+V+VG F+ ++ER ++
Sbjct: 128 KIVCDEHG-SRGYGFVHFETDEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLDLGM 186
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG-KSKCFGFVNFENSDDAAR 258
KF NVYVKNLSE T +E L++ F YG I SA VM D KSK FGFV+FEN + A +
Sbjct: 187 RKFNNVYVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AVEALNG K YVG+AQ K ER+ ELK +FE+ KE +++QG NL++KNLDD+ID
Sbjct: 247 AVEALNGNDNAGKILYVGRAQTKIERQAELKEKFERIRKERINRYQGVNLFVKNLDDNID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D++L++ F+ FG+ITS KVM + +G S+G GFV FS+PEEA++A++EMN K++ ++PLYV
Sbjct: 307 DKRLRKEFAQFGTITSAKVMTE-NGRSKGFGFVYFSSPEEATKAIVEMNEKIIEARPLYV 365
Query: 379 ALAQRKEDRRARLQVCLLQ 397
ALAQRKEDR+A L + +Q
Sbjct: 366 ALAQRKEDRKAYLALLNMQ 384
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N++ +L+V +L+ N+ D +L F Q G + S +V + RS G+G+V FS+ +EA
Sbjct: 289 NRYQGVNLFVKNLDDNIDDKRLRKEFAQFGTITSAKVMTE--NGRSKGFGFVYFSSPEEA 346
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + +P+ V + R
Sbjct: 347 TKAIVEMNEKIIEARPLYVALAQR 370
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 282/372 (75%), Gaps = 2/372 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 50 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 109
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFSAFG ILSCK
Sbjct: 110 EELNYTPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 169
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+
Sbjct: 170 VAADEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKA 229
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ + +EE +K F YG ITS + +D DGKSK FGFVNFEN D A +AV
Sbjct: 230 NFTNIYVKNIDLNYSEESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAV 289
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLDD+ID E
Sbjct: 290 EELNDKEINGQKIYVGRAQKKRERLEELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSE 349
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F FG+ITS KVM D +G S+G GFV F+TPEEA++A+ EMN +M+ KPLYVAL
Sbjct: 350 KLEEEFKSFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVAL 409
Query: 381 AQRKEDRRARLQ 392
AQRK+ RR++L+
Sbjct: 410 AQRKDVRRSQLE 421
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 168/296 (56%), Gaps = 19/296 (6%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + G ++++ +L + + L+D F+ G+++S +V D +S +G+V++ A
Sbjct: 131 PSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVAAD-EFGQSKCFGFVHYETA 189
Query: 76 QEAARALEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALH 129
+ A A+E +N LN + + V S +D + K+ NI++KN+D ++
Sbjct: 190 EAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFE 249
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
F+ +G I S + D +G+SKG+GFV F+N +SA KA+E+LN +N +++YVG +
Sbjct: 250 KLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELNDKEINGQKIYVGRAQK 309
Query: 190 KQERDTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K+ER E+ K +K+ N++VKNL ++ E L++ F +GTITSA VM D
Sbjct: 310 KRERLEELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSEKLEEEFKSFGTITSAKVMVD 369
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
GKSK FGFV F ++A +A+ +N + + K YV AQ+K R +L+ Q +
Sbjct: 370 DAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQ 425
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/394 (56%), Positives = 285/394 (72%), Gaps = 10/394 (2%)
Query: 8 GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 67
GQN G + + SLYVGDL +V +S L++ F+ G V+S+RVCRD +TR SLGY
Sbjct: 21 GQNPTG-----SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGY 75
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
YVNF +A RA++ +NF L+GKP+R+M+S RDP++R+SGAGNIFIKNLDK ID+K+
Sbjct: 76 AYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKS 135
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
++DTFS FGNILSCKVA D G SKGYGFV F+ EE+AQ AI+K+NGMLL K+V+VG F
Sbjct: 136 IYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKF 195
Query: 188 LRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+ +R+ E+ ++ KFTNVYVKN E ++ L+K F +YGTITS VM +GKSK F
Sbjct: 196 QPRAQRNRELGETAKKFTNVYVKNFGEHYNKDTLEKLFAKYGTITSCDVMTS-EGKSKGF 254
Query: 246 GFVNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
GFV F ++A AV+ALN + D + +V +AQKKSER ELK + EQ+ E K+
Sbjct: 255 GFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKY 314
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
QG NLY+KNLD+S+DDE LK+ F FG+ITS KVM D +G S+G GFV F PEEA+ A+
Sbjct: 315 QGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAV 374
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
EMN KMV SKPLYVALAQRKEDRRA+L +Q
Sbjct: 375 SEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQ 408
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 156/295 (52%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A A
Sbjct: 118 GAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAID-EEGSSKGYGFVHFETEEAAQNA 176
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
++ +N L GK + V + R R+ G N+++KN + + L F+ +
Sbjct: 177 IQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKKFTNVYVKNFGEHYNKDTLEKLFAKY 236
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLRKQER 193
G I SC V T G+SKG+GFV F E A+ A++ LN + +D +++V +K ER
Sbjct: 237 GTITSCDVMTS-EGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSER 295
Query: 194 DTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K + N+YVKNL ES +E L+K F +G ITSA VM D +G+
Sbjct: 296 HAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGR 355
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV FE ++A AV +N K K YV AQ+K +R +L Q+ Q +
Sbjct: 356 SKGFGFVCFEKPEEATTAVSEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRL 410
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/449 (47%), Positives = 293/449 (65%), Gaps = 55/449 (12%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
+A QA+ NQ + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD
Sbjct: 26 VAAAQAEAPTPTSAAPAHNQ-NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAV 84
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
TRRSLGY YVN++++++ +ALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD
Sbjct: 85 TRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLD 144
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
AID+KALHDTF+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K
Sbjct: 145 HAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK 204
Query: 181 QVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
+V+VGH + K+ER ++ K+ FTN+YVKN+ ++E+ ++ F ++G ITSA + RD
Sbjct: 205 KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDE 264
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
GKS+ FGFVN+ + A+ AV+ALN F ++ YVG+AQKK ERE EL+ Q+E E
Sbjct: 265 QGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLE 324
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR------------ 346
K+QG NLYIKNL+D +DDEKL+ +F+PFG+ITS KVMRD R
Sbjct: 325 KQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAERSETPGDEKKEES 384
Query: 347 ----------------------------------------GSGFVAFSTPEEASRALLEM 366
G GFV FS P+EA++A+ EM
Sbjct: 385 KEEAEKTEESKEGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEM 444
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQVCL 395
N KM+ KPLYVALAQRK+ R+ +L+ +
Sbjct: 445 NQKMIEGKPLYVALAQRKDVRKNQLEATI 473
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/446 (49%), Positives = 289/446 (64%), Gaps = 56/446 (12%)
Query: 9 QNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYG 68
+ N + Q + SLYVG+L+++VT++ L++LF+ +GQV S+RVCRD TRRSLGY
Sbjct: 40 ETPNSAAPSTTQPHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYA 99
Query: 69 YVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKAL 128
YVN++N + RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KAL
Sbjct: 100 YVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKAL 159
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
HDTF+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH +
Sbjct: 160 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 219
Query: 189 RKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCF 245
K++R ++ K+ FTNVYVKNL T E+ ++ FG+YG ITSA + D + GKS+ F
Sbjct: 220 AKKDRQSKFEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGF 279
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG 305
GFVNF + AA AVE LN K+F ++ YVG+AQKK ERE EL+ Q E E A K+QG
Sbjct: 280 GFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQG 339
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSC------------------------------ 335
NLY+KNL D IDDEKL+ LF FG+ITS
Sbjct: 340 VNLYVKNLTDDIDDEKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEA 399
Query: 336 ----------------------KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
K + G S+G GFV FS P+EAS+A+ EMN +MV
Sbjct: 400 KKESAEEESSDKSDKAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNG 459
Query: 374 KPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVALAQRK+ R+++L+ +Q R
Sbjct: 460 KPLYVALAQRKDVRKSQLEAS-IQAR 484
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/446 (49%), Positives = 289/446 (64%), Gaps = 56/446 (12%)
Query: 9 QNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYG 68
+ N + Q + SLYVG+L+++VT++ L++LF+ +GQV S+RVCRD TRRSLGY
Sbjct: 40 ETPNSAAPSTTQPHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYA 99
Query: 69 YVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKAL 128
YVN++N + RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KAL
Sbjct: 100 YVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKAL 159
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
HDTF+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH +
Sbjct: 160 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 219
Query: 189 RKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCF 245
K++R ++ K+ FTNVYVKNL T E+ ++ FG+YG ITSA + D + GKS+ F
Sbjct: 220 AKKDRQSKFEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGF 279
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG 305
GFVNF + AA AVE LN K+F ++ YVG+AQKK ERE EL+ Q E E A K+QG
Sbjct: 280 GFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQG 339
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSC------------------------------ 335
NLY+KNL D IDDEKL+ LF FG+ITS
Sbjct: 340 VNLYVKNLTDDIDDEKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEA 399
Query: 336 ----------------------KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
K + G S+G GFV FS P+EAS+A+ EMN +MV
Sbjct: 400 KKESAEEESSDKSDKAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNG 459
Query: 374 KPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVALAQRK+ R+++L+ +Q R
Sbjct: 460 KPLYVALAQRKDVRKSQLEAS-IQAR 484
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/437 (50%), Positives = 288/437 (65%), Gaps = 58/437 (13%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 50 QPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGE 109
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNIL
Sbjct: 110 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN- 198
SCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 229
Query: 199 -KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDA 256
K+ FTNVYVKNL T E+ ++ F +YG ITSA + RD + GKS+ FGFVNF N D A
Sbjct: 230 MKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSA 289
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
A AVE LN K++ ++ YVG+AQKK ERE EL+ Q E E A K+QG NLY+KNL D
Sbjct: 290 AAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDD 349
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSG--------------------------------- 343
IDDEKL+ LF FG+ITS +VMRD G
Sbjct: 350 IDDEKLRDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVKEETKKEAGGEDS 409
Query: 344 -------------------ISRGSGF--VAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+ + GF V FS P+EAS+A+ EMN +MV KPLYVALAQ
Sbjct: 410 AEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Query: 383 RKEDRRARLQVCLLQCR 399
RK+ R+++L+ +Q R
Sbjct: 470 RKDVRKSQLEAS-IQAR 485
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 157/294 (53%), Gaps = 22/294 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L + FS+ G + S +V D + +S GY +V ++N
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 221
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+Y+KNL+ + +E+ ++LF +G ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYVKNLEPEVTNEEFRELFEKYGEITSASLSR 268
Query: 340 D-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
D +G SRG GFV F + A+ A+ ++N K + LYV AQ+K +R L+
Sbjct: 269 DNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELR 322
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 283/372 (76%), Gaps = 2/372 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+ P+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFSAFG ILSCK
Sbjct: 111 EELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 170
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+
Sbjct: 171 VATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKA 230
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ + +EE +K F +G ITS + +D DGKSK FGFVNFE+ + A +AV
Sbjct: 231 NFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAV 290
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLDD+ID E
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSE 350
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFG+ITS KVM D +G S+G GFV F+TPEEA++A+ EMN +M+ KPLYVAL
Sbjct: 351 KLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVAL 410
Query: 381 AQRKEDRRARLQ 392
AQRK+ RR++L+
Sbjct: 411 AQRKDVRRSQLE 422
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 168/296 (56%), Gaps = 19/296 (6%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + G ++++ +L + + L+D F+ G+++S +V D +S +G+V++ A
Sbjct: 132 PSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETA 190
Query: 76 QEAARALEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALH 129
+ A A+E +N LN + + V S +D + K+ NI++KN+D ++
Sbjct: 191 EAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFE 250
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
FS FG I S + D +G+SKG+GFV F++ ESA KA+E+LN +N +++YVG +
Sbjct: 251 KLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQK 310
Query: 190 KQERDTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K+ER E+ K +K+ N++VKNL ++ E L++ F +GTITSA VM D
Sbjct: 311 KRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD 370
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
GKSK FGFV F ++A +A+ +N + + K YV AQ+K R +L+ Q +
Sbjct: 371 EAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQ 426
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/419 (50%), Positives = 293/419 (69%), Gaps = 46/419 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+++VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 61 SASLYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKAL 120
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 121 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 180
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+V+VGH + K++R ++ K+
Sbjct: 181 VAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKA 240
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG-KSKCFGFVNFENSDDAARA 259
FTN+YVKN+ T+E+ ++ F ++G +TSA + RD D KS+ FGFVNF N + AA+A
Sbjct: 241 NFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKA 300
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LNGK F ++ YVG+AQKK ERE EL+ +E E A K+QG NLY+KNLDD +DD
Sbjct: 301 VDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDD 360
Query: 320 EKLKQLFSPFGSITSCKVMRDPS------------------------------------- 342
+KL++LF+PFGSITS KVMRD
Sbjct: 361 DKLRELFTPFGSITSAKVMRDTPAETAEAEEKEKKDSEKNKENIKEGETAEAENTEDKPK 420
Query: 343 ------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV F+ PEEAS+A+ +MN +MV +KPLYVALAQRK+ R+ +L+ +
Sbjct: 421 SEKRTVGKSKGFGFVCFNNPEEASKAVTDMNQRMVNNKPLYVALAQRKDVRKNQLEASI 479
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/387 (54%), Positives = 283/387 (73%), Gaps = 7/387 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA-- 75
+ +SLYVGDLE +VT++QL++LF+ +G V S+RVCRD TRRSLGY YVN+++A
Sbjct: 17 STPLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALD 76
Query: 76 -QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
Q A RA+E LN+ +NGKP+R+M+SHRDPS RKSG GNIFIKNLDK ID KALHDTFSA
Sbjct: 77 PQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSA 136
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG ILSCKVATD NG SKGYGFV F+++ +A +AI+ +N + K VYV F ++ +R
Sbjct: 137 FGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKKIEGKIVYVAPFQKRADRP 196
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
++ +TNV+VKNL +++L K E+G ITSAVVM+D G SK FGF+NF++++
Sbjct: 197 RA--RTLYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAE 254
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL- 313
AA+ VE LN ++ K Y G+AQKK+ERE L+ + E++ +E K+Q NLY+KNL
Sbjct: 255 SAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQSMNLYVKNLS 314
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR-ALLEMNGKMVV 372
D+ +DD+ L++LF+ G+ITSCKVM+D SG S+G GFV F++ +EA+R + EMNGKMV
Sbjct: 315 DEEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEATRPPVTEMNGKMVK 374
Query: 373 SKPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVALAQRK+ RRA +Q R
Sbjct: 375 GKPLYVALAQRKDVRRATQLEANMQAR 401
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAF 353
+ A+ ++LY+ +L+ + + +L +LFS G + S +V RD ++R G +V +
Sbjct: 14 QPASTPLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRD--AVTRRSLGYAYVNY 71
Query: 354 ST---PEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
++ P+ A RA+ +N +V KP+ + + R R
Sbjct: 72 NSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSAR 109
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/388 (53%), Positives = 283/388 (72%), Gaps = 17/388 (4%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
+G + N + SLYVG+L+ +VT++ L++LFN +G V S+RVCRD TRRSLGY YVN
Sbjct: 59 SGVPVSQNNSNSASLYVGELDPSVTEAMLFELFNNIGAVASIRVCRDAVTRRSLGYAYVN 118
Query: 72 FSNAQEA-----ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
F N+ + RAL+ LN+T + GKP R+M+S RDPSLRK+G GN+FIKNLD +ID+K
Sbjct: 119 FHNSSDVNLLTGERALDELNYTLIKGKPCRIMWSQRDPSLRKTGTGNVFIKNLDASIDNK 178
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
ALHDTF+AFG+ILSCKVA D G SKGYGFV + ESA+ AI K VYVGH
Sbjct: 179 ALHDTFTAFGSILSCKVAVDELGNSKGYGFVHYKTSESAEAAI----------KHVYVGH 228
Query: 187 FLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ K++R ++ + K KFTNVYVKN+ +E + ++ F ++G +TS + D +GKS+
Sbjct: 229 HVSKKDRQSKFDDMKLKFTNVYVKNIDPEISEAEFEELFKKFGNVTSLSLSVDENGKSRG 288
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+EN +DAARAVE L+ ++ D++ YV +AQKK ERE EL+ Q+EQ + +K+
Sbjct: 289 FGFVNYENHEDAARAVEELHDTEYKDRKLYVCRAQKKHEREEELRKQYEQAKLDKLNKYN 348
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDD IDDE+L+Q FS +G+ITS K+M D +G S+G GFV FS+P+EA++A+
Sbjct: 349 GINLFVKNLDDDIDDERLRQEFSIYGTITSAKIMVDDNGKSKGFGFVCFSSPDEATKAIT 408
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQ 392
EMN +MV KPLYVALAQRK+ RR++L+
Sbjct: 409 EMNQRMVSGKPLYVALAQRKDVRRSQLE 436
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 157/283 (55%), Gaps = 17/283 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
GT ++++ +L+A++ + L+D F G ++S +V D S GYG+V++ ++ A A
Sbjct: 162 GTGNVFIKNLDASIDNKALHDTFTAFGSILSCKVAVD-ELGNSKGYGFVHYKTSESAEAA 220
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
++ + K R D L+ + N+++KN+D I + F FGN+ S
Sbjct: 221 IKHVYVGHHVSKKDR-QSKFDDMKLKFT---NVYVKNIDPEISEAEFEELFKKFGNVTSL 276
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---- 197
++ D NG+S+G+GFV ++N E A +A+E+L+ D+++YV +K ER+ E+
Sbjct: 277 SLSVDENGKSRGFGFVNYENHEDAARAVEELHDTEYKDRKLYVCRAQKKHEREEELRKQY 336
Query: 198 --------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
NK N++VKNL + +E L++ F YGTITSA +M D +GKSK FGFV
Sbjct: 337 EQAKLDKLNKYNGINLFVKNLDDDIDDERLRQEFSIYGTITSAKIMVDDNGKSKGFGFVC 396
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
F + D+A +A+ +N + K YV AQ+K R +L+ Q
Sbjct: 397 FSSPDEATKAITEMNQRMVSGKPLYVALAQRKDVRRSQLESQI 439
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/433 (50%), Positives = 286/433 (66%), Gaps = 57/433 (13%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 50 QPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGE 109
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNIL
Sbjct: 110 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN- 198
SCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 229
Query: 199 -KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDA 256
K+ FTNVYVKNL T E+ ++ F +YG ITSA + RD + GKS+ FGFVNF N D A
Sbjct: 230 MKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSA 289
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
A AVE LN K++ ++ YVG+AQKK ERE EL+ Q E E A K+QG NLY+KNL D
Sbjct: 290 AAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDD 349
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSG--------------------------------- 343
IDDEKL+ LF FG+ITS +VMRD G
Sbjct: 350 IDDEKLRDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVREETKKEAGGEDS 409
Query: 344 -------------------ISRGSGF--VAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+ + GF V FS P+EAS+A+ EMN +MV KPLYVALAQ
Sbjct: 410 AEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Query: 383 RKEDRRARLQVCL 395
RK+ R+++L+ +
Sbjct: 470 RKDVRKSQLEASI 482
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 157/294 (53%), Gaps = 22/294 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L + FS+ G + S +V D + +S GY +V ++N
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 221
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+Y+KNL+ + +E+ ++LF +G ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYVKNLEPEVTNEEFRELFEKYGEITSASLSR 268
Query: 340 D-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
D +G SRG GFV F + A+ A+ ++N K + LYV AQ+K +R L+
Sbjct: 269 DNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELR 322
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/371 (56%), Positives = 283/371 (76%), Gaps = 2/371 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+TSLYVGDL+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++ + A+
Sbjct: 39 STSLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAYVNFADHEAGKVAI 98
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+ R+M+S RDP+LRK G GNIFIKNL+ ID+KAL+DTFS FGNILS K
Sbjct: 99 ERLNYTPIKGRLCRIMWSQRDPALRKKGNGNIFIKNLNADIDNKALYDTFSVFGNILSSK 158
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK- 201
+ATD NG SKG+GFV F+ E +A++AI+ LNGMLLN +++YV L ++ERD+++ K++
Sbjct: 159 IATDENGNSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEKTRA 218
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN+ TTEE+ ++ F + G +S V+ + DGK K FGFVN+EN +DA +AV
Sbjct: 219 NFTNVYVKNVPLDTTEEEFKELFEKPGKTSSIVLEKGEDGKLKGFGFVNYENHEDALKAV 278
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN +F +E YVG+AQKK ER LK Q+E E K+QG NL+IKNLDDSIDDE
Sbjct: 279 EELNNTEFKGQELYVGRAQKKYERMQALKQQYEATRLEKMAKYQGVNLFIKNLDDSIDDE 338
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK+ F+PFG+ITS KVMR +G S+G GFV FS+PEEA++A+ E N ++V KPLYVA+
Sbjct: 339 KLKEEFAPFGTITSTKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAI 398
Query: 381 AQRKEDRRARL 391
AQRKE RR++L
Sbjct: 399 AQRKEVRRSQL 409
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 151/290 (52%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L A++ + LYD F+ G ++S ++ D S G+G+V+F A A
Sbjct: 126 GNGNIFIKNLNADIDNKALYDTFSVFGNILSSKIATD-ENGNSKGFGFVHFEEEAAAKEA 184
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAF 135
++ LN LNG+ I V RD L K+ A N+++KN+ + + F
Sbjct: 185 IDALNGMLLNGQEIYVAPHLSRKERDSQLEKTRANFTNVYVKNVPLDTTEEEFKELFEKP 244
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G S + +G+ KG+GFV ++N E A KA+E+LN +++YVG +K ER
Sbjct: 245 GKTSSIVLEKGEDGKLKGFGFVNYENHEDALKAVEELNNTEFKGQELYVGRAQKKYERMQ 304
Query: 196 EIN------------KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K + N+++KNL +S +E L++ F +GTITS VMR +GKSK
Sbjct: 305 ALKQQYEATRLEKMAKYQGVNLFIKNLDDSIDDEKLKEEFAPFGTITSTKVMRTENGKSK 364
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F + ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 365 GFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRSQLAQQIQ 414
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 146/286 (51%), Gaps = 17/286 (5%)
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQK 167
S + ++++ +LD ++ L+D FS G++ S +V D + S GY +V F + E+ +
Sbjct: 37 SNSTSLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAYVNFADHEAGKV 96
Query: 168 AIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG 227
AIE+LN + + + +RD + K N+++KNL+ + L +F +G
Sbjct: 97 AIERLNYTPIKGRLCRI----MWSQRDPALRKKGNGNIFIKNLNADIDNKALYDTFSVFG 152
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I S+ + D +G SK FGFV+FE A A++ALNG + +E YV + ER+ +
Sbjct: 153 NILSSKIATDENGNSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQ 212
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLD-DSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
L+ + N+Y+KN+ D+ ++E + P G +S + + G +
Sbjct: 213 LEK----------TRANFTNVYVKNVPLDTTEEEFKELFEKP-GKTSSIVLEKGEDGKLK 261
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G GFV + E+A +A+ E+N + LYV AQ+K +R L+
Sbjct: 262 GFGFVNYENHEDALKAVEELNNTEFKGQELYVGRAQKKYERMQALK 307
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 20/229 (8%)
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A KA E+L + + D+Q + + ++ N T++YV +L S +E L F
Sbjct: 5 ADKAAEQLEQLNIKDEQQNAPSSTGSEGQQSDSNS---TSLYVGDLDPSVSEALLYDIFS 61
Query: 225 EYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
G++TS V RD K+ + +VNF + + A+E LN + + +Q+
Sbjct: 62 PIGSVTSIRVCRDAITKTSLGYAYVNFADHEAGKVAIERLNYTPIKGRLCRIMWSQRDP- 120
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
A K N++IKNL+ ID++ L FS FG+I S K+ D +G
Sbjct: 121 ---------------ALRKKGNGNIFIKNLNADIDNKALYDTFSVFGNILSSKIATDENG 165
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S+G GFV F A A+ +NG ++ + +YVA +++R ++L+
Sbjct: 166 NSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLE 214
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/419 (50%), Positives = 291/419 (69%), Gaps = 46/419 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 118 EELNYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVG+ + K++R ++ K+
Sbjct: 178 VAQDETGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 237
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN+S T+ + ++ F +YG +TS+ + RD +GKS+ FGFVNF + A +AV
Sbjct: 238 NFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAYKAV 297
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNG F +E YVG+AQKK ERE EL+ +E E A K+QG NLYIKNLDD +DD+
Sbjct: 298 DELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDD 357
Query: 321 KLKQLFSPFGSITSCKVMRDP--------------------------------------- 341
KL+Q+FS FG ITS KVMRD
Sbjct: 358 KLRQMFSEFGPITSAKVMRDSLQEGEEEVKDQEKDKENQKEAENEAEAESAENAEKKAEK 417
Query: 342 -----SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P++A++A+ EMN +M+ +KPLYVALAQRK+ R+++L+ +
Sbjct: 418 KGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASI 476
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/393 (51%), Positives = 287/393 (73%), Gaps = 2/393 (0%)
Query: 2 AQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST 61
A+ +A+ ++ G+ +Q SLYVG+L+ +VT++ L+++FN +G V SVRVCRD T
Sbjct: 24 AEGEAKTESSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAIT 83
Query: 62 RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDK 121
RRSLGY YVNF N + RALE LN++P+ +P R+M+S RDP+LRK+GAGNI+IKNLD
Sbjct: 84 RRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDP 143
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
AID+KALHDTFSAFG ILSCK+ATD G S+G+GFV +++ ESA+ AI+ +NGMLLNDK+
Sbjct: 144 AIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKK 203
Query: 182 VYVGHFLRKQER--DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
V+VG + K +R E K+ FTNV++KNL TE + ++ ++G +S + + +
Sbjct: 204 VFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDE 263
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
GK FGFV+++ D A +A++ L+ +F + + G+A+KK ER EL+ Q+E + E
Sbjct: 264 GKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEK 323
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEA 359
+K+QG NLYIKNLDD+IDD+KL+ F+P G+ITS KVM D +G S+G GFV +S+PEEA
Sbjct: 324 LNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEA 383
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
++A+ EMN ++V KPLYV LAQRK+ RR++LQ
Sbjct: 384 TKAVTEMNHRLVAGKPLYVVLAQRKDVRRSQLQ 416
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 153/290 (52%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++Y+ +L+ + + L+D F+ GQ++S ++ D S G+G+V++ +A+ A A
Sbjct: 132 GAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATD-EFGNSRGFGFVHYESAESAESA 190
Query: 82 LEMLNFTPLNGKPI----RVMYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V S R S +K+ N+FIKNL I + + F
Sbjct: 191 IQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKF 250
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G S ++T+ G+ G+GFV + + A KAI+ L+ +++ G +K ER
Sbjct: 251 GETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERAD 310
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ NK + N+Y+KNL ++ ++ L+ F +GTITSA VM D GKSK
Sbjct: 311 ELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSK 370
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV + + ++A +AV +N + K YV AQ+K R +L+ Q +
Sbjct: 371 GFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVRRSQLQQQIQ 420
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/400 (52%), Positives = 281/400 (70%), Gaps = 4/400 (1%)
Query: 2 AQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST 61
A +Q N G + SLY+GDL +V+++ L++ F+ G V+S+RVCRD ++
Sbjct: 35 AVIQQGPPPTNIGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTS 94
Query: 62 RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDK 121
R SLGY YVNF +A RAL+ +NF ++G+P+R+M+S RDP+ R++G GNIFIKNLD+
Sbjct: 95 RLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDR 154
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
ID+K+++DTFS FGNILSCKVATD G SKGYGFV F+ E SAQ AIEK+NGMLL+DK+
Sbjct: 155 VIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKK 214
Query: 182 VYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
VYVG F + +R E+ +S K+TNV+VKN E +E L F ++G ITSAVVM D
Sbjct: 215 VYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQ 274
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMK 297
GK K FGFV F + D A +AVE LN + D + V +AQKKSER ELK ++E +
Sbjct: 275 GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQ 334
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPE 357
E ++QG NLY+KN+++ ++D+ L+ FS FG+ITS KVM D +G S+G GFV F PE
Sbjct: 335 ERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPE 394
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
EA+ A+ +MN KM+ +KPLYVALAQRKEDRRA+L +Q
Sbjct: 395 EATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQ 434
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 21/299 (7%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F
Sbjct: 139 ARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATD-DEGNSKGYGFVHFETEHS 197
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDT 131
A A+E +N L+ K + V + R L +SG N+F+KN + +D + L
Sbjct: 198 AQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAM 257
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLR 189
FS FG I S V TD G+ KG+GFV F ++++A +A+EKLN +L D ++ V +
Sbjct: 258 FSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQK 317
Query: 190 KQERDTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K ER E + + + N+YVKN+ E ++ L+ F +GTITSA VM D
Sbjct: 318 KSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVD 377
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+G+SK FGFV FE ++A AV +N K K YV AQ+K +R +L Q+ Q +
Sbjct: 378 ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRL 436
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/446 (49%), Positives = 291/446 (65%), Gaps = 56/446 (12%)
Query: 9 QNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYG 68
+ N G + Q + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY
Sbjct: 40 ETPNSAGPSTTQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYA 99
Query: 69 YVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKAL 128
YVN++N + RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KAL
Sbjct: 100 YVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKAL 159
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
HDTF+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH +
Sbjct: 160 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 219
Query: 189 RKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCF 245
K++R ++ K+ FTNVYVKNL + E+ ++ F +YG ITSA + RDG+ GKS+ F
Sbjct: 220 AKKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGF 279
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG 305
GF F + AA AVE LN K++ ++ YVG+AQKK ERE EL+ Q E E A K+QG
Sbjct: 280 GFFYFLKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQG 339
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG---------------------- 343
NLY+KNL D IDDEKL+ LF FG+ITS +VMRD +G
Sbjct: 340 VNLYVKNLTDDIDDEKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEA 399
Query: 344 ----------------------------ISRGSGF--VAFSTPEEASRALLEMNGKMVVS 373
+ + GF V FS P+EAS+A+ EMN +MV
Sbjct: 400 KKESGEEDSADKSDKVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNG 459
Query: 374 KPLYVALAQRKEDRRARLQVCLLQCR 399
KPLYVALAQRK+ R+++L+ +Q R
Sbjct: 460 KPLYVALAQRKDVRKSQLEAS-IQAR 484
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/353 (56%), Positives = 265/353 (75%), Gaps = 2/353 (0%)
Query: 47 MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSL 106
+G V S+RVCRD TRRSLGY YVNF NA + RALE LN+TP+ GKP R+M+S RDP+L
Sbjct: 2 IGSVASIRVCRDAVTRRSLGYAYVNFMNAADGERALEQLNYTPIKGKPCRIMWSQRDPAL 61
Query: 107 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQ 166
RK+ GNIFIKNLD++ID+KALHDTF+AFGNILSCKVA D NG SKGYGFV ++ E+A+
Sbjct: 62 RKTSLGNIFIKNLDESIDNKALHDTFAAFGNILSCKVALDENGLSKGYGFVHYEGGEAAE 121
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFG 224
AI+ +NGMLLNDK VYVGH + ++ER +I+ +S +TN+YVK L+ +E + + F
Sbjct: 122 AAIQAVNGMLLNDKVVYVGHHVPRRERQAKIDEVRSNYTNLYVKGLAPEISEAEFSELFA 181
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+YG +TSAV+ D DGKSK FGFVNF + + AA+A+ L+ + + YV +AQKK ER
Sbjct: 182 KYGQVTSAVLQVDQDGKSKGFGFVNFADHEAAAKALTELHDSEHKGQTLYVSRAQKKGER 241
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
E ELK +EQ + + K+QG NLY+KNL+D +D+EK+ F+ FG+ITS K+MRD G
Sbjct: 242 EEELKKSYEQQKYDKSLKYQGVNLYVKNLEDDMDEEKVTAEFAAFGTITSTKIMRDEKGA 301
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
S+G GFV FS+P+EA++A+ E+NGKM KPLYV+LAQRK+ R+ +L+ L Q
Sbjct: 302 SKGFGFVCFSSPDEATKAVTELNGKMFGQKPLYVSLAQRKDVRKQQLEAQLAQ 354
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 103/191 (53%), Gaps = 19/191 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LYV L +++++ +LF + GQV S + D +S G+G+VNF++ + AA+AL
Sbjct: 160 TNLYVKGLAPEISEAEFSELFAKYGQVTSAVLQVD-QDGKSKGFGFVNFADHEAAAKALT 218
Query: 84 MLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHK 126
L+ + G+ + V + + D SL+ G N+++KNL+ +D +
Sbjct: 219 ELHDSEHKGQTLYVSRAQKKGEREEELKKSYEQQKYDKSLKYQGV-NLYVKNLEDDMDEE 277
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
+ F+AFG I S K+ D G SKG+GFV F + + A KA+ +LNG + K +YV
Sbjct: 278 KVTAEFAAFGTITSTKIMRDEKGASKGFGFVCFSSPDEATKAVTELNGKMFGQKPLYVSL 337
Query: 187 FLRKQERDTEI 197
RK R ++
Sbjct: 338 AQRKDVRKQQL 348
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/400 (52%), Positives = 282/400 (70%), Gaps = 4/400 (1%)
Query: 2 AQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST 61
A +Q N G + SLY+GDL +VT+S L++ F+ G V+S+RVCRD ++
Sbjct: 40 AAIQQGPPQTNIGYPPNATYSMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTS 99
Query: 62 RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDK 121
R SLGY YVNF +A RAL+ +NF ++G+P+R+M+S RDP+ R++G GNIFIKNLD+
Sbjct: 100 RLSLGYAYVNFQQPADAERALDTMNFEIIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDR 159
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
ID+K+++DTFS FGNILSCKVATD +G SKGYGFV F+ E SAQ AIEK+NGMLL+DK+
Sbjct: 160 VIDNKSIYDTFSLFGNILSCKVATDDDGNSKGYGFVHFETEASAQTAIEKVNGMLLSDKK 219
Query: 182 VYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
V+VG F + +R E+ +S K+TNV+VKN E E L++ F +YG I SAVVM D +
Sbjct: 220 VFVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDEAKLKEMFSKYGEINSAVVMTDAE 279
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKE--WYVGKAQKKSERELELKHQFEQNMK 297
GK K FGFV + + + A++AV+ LN + E V +AQKKSER ELK ++E +
Sbjct: 280 GKPKGFGFVAYADPEAASKAVDDLNESILEGTELKLSVCRAQKKSERSAELKRKYEALKQ 339
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPE 357
E ++QG NLY+KN+++ + DE L+ F+ FG+ITS KVM D +G S+G GFV F PE
Sbjct: 340 ERVQRYQGVNLYVKNIEEELTDEGLRAHFAQFGTITSAKVMVDENGRSKGFGFVCFEKPE 399
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
EA+ A+ EMN KM+ +KPLYVALAQRKEDRRA+L +Q
Sbjct: 400 EATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQ 439
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 161/299 (53%), Gaps = 21/299 (7%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F
Sbjct: 144 ARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVATD-DDGNSKGYGFVHFETEAS 202
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDT 131
A A+E +N L+ K + V + R L +SG N+F+KN + +D L +
Sbjct: 203 AQTAIEKVNGMLLSDKKVFVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDEAKLKEM 262
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLR 189
FS +G I S V TD G+ KG+GFV + + E+A KA++ LN +L + ++ V +
Sbjct: 263 FSKYGEINSAVVMTDAEGKPKGFGFVAYADPEAASKAVDDLNESILEGTELKLSVCRAQK 322
Query: 190 KQERDTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K ER E + + + N+YVKN+ E T+E L+ F ++GTITSA VM D
Sbjct: 323 KSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEELTDEGLRAHFAQFGTITSAKVMVD 382
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+G+SK FGFV FE ++A AV +N K K YV AQ+K +R +L Q+ Q +
Sbjct: 383 ENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRL 441
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/402 (52%), Positives = 283/402 (70%), Gaps = 9/402 (2%)
Query: 4 VQAQGQNVNGG----GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL 59
V QG N G NA + SLY+GDL +VT+S L++ F+ G V+S+RVCRD
Sbjct: 32 VMQQGPPANMGYPPNAPNAT-YSMASLYIGDLHPDVTESMLFEKFSMAGPVLSIRVCRDN 90
Query: 60 STRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL 119
++R SLGY YVNF +A RAL+ +NF ++G+P+R+M+S RDP+ R++G GNIFIKNL
Sbjct: 91 TSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNL 150
Query: 120 DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
D+ ID+K+++DTFS FGNILSCKVATD G SKGYGFV F+ E SA AIEK+NGMLL+D
Sbjct: 151 DRVIDNKSIYDTFSLFGNILSCKVATDEEGNSKGYGFVHFETEASALTAIEKVNGMLLSD 210
Query: 180 KQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K+V+VG F + +R E+ +S K+TNV++KN + E+ L + F +YG ITSAVVM D
Sbjct: 211 KKVFVGKFQPRAQRMKELGESGLKYTNVFIKNFGDHLDEKKLTEMFSKYGEITSAVVMTD 270
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQN 295
GK K FGFV F + D A +AV+ LN + D + V +AQKKSER ELK ++E
Sbjct: 271 NSGKPKGFGFVAFVDPDAAIKAVDTLNESTLEGTDLKLSVCRAQKKSERTAELKRKYEAL 330
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST 355
+E ++QG NLY+KN+++ + D+ L++ F+ FGSITS KVM D +G S+G GFV F
Sbjct: 331 KQERVQRYQGVNLYVKNIEEEMTDDGLREHFANFGSITSAKVMVDENGRSKGFGFVCFEK 390
Query: 356 PEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
PEEA+ A+ EMN KM+ +KPLYVALAQRKEDRRA+L +Q
Sbjct: 391 PEEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQ 432
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 21/299 (7%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F
Sbjct: 137 ARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVATD-EEGNSKGYGFVHFETEAS 195
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDT 131
A A+E +N L+ K + V + R L +SG N+FIKN +D K L +
Sbjct: 196 ALTAIEKVNGMLLSDKKVFVGKFQPRAQRMKELGESGLKYTNVFIKNFGDHLDEKKLTEM 255
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLR 189
FS +G I S V TD +G+ KG+GFV F + ++A KA++ LN L D ++ V +
Sbjct: 256 FSKYGEITSAVVMTDNSGKPKGFGFVAFVDPDAAIKAVDTLNESTLEGTDLKLSVCRAQK 315
Query: 190 KQERDTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K ER E + + + N+YVKN+ E T++ L++ F +G+ITSA VM D
Sbjct: 316 KSERTAELKRKYEALKQERVQRYQGVNLYVKNIEEEMTDDGLREHFANFGSITSAKVMVD 375
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+G+SK FGFV FE ++A AV +N K K YV AQ+K +R +L Q+ Q +
Sbjct: 376 ENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRL 434
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/369 (54%), Positives = 268/369 (72%), Gaps = 1/369 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVGDL ++ D QL F+++G V VCRD+++R+SLGYGYVNF + ++A RALE
Sbjct: 2 TSLYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALE 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+N+ + G+PIR+M+S RDPSLRKSG GNIFIKNL K I+ K L+DTFS FG ILSCK+
Sbjct: 62 QMNYEVVMGRPIRIMWSQRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFGRILSCKI 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
A D NG SKGYGFV F+NEE A++AI+K+N M + K VYVG+F+ + +R ++ K KF
Sbjct: 122 AMDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRKSQNRKQKFN 181
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+YVKN T +E L++ F E+G I SA VM+D +GKSK FGFV + N + A AV A+
Sbjct: 182 NIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFGFVCYLNPEHAEAAVAAM 241
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF-QGANLYIKNLDDSIDDEKL 322
+GK+ + Y +AQ+K ER+ ELK + E+ E K+ NLY+KNLDD IDDE+L
Sbjct: 242 HGKEIGGRSLYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKNLDDEIDDERL 301
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K++FS +G I+S KVM D + S+G GFV F+ PE+A++A+ E NG++ SKPLYVA+AQ
Sbjct: 302 KEIFSKYGPISSAKVMTDSNNRSKGFGFVCFTNPEQATKAVTEANGRVEYSKPLYVAIAQ 361
Query: 383 RKEDRRARL 391
RKEDRRA L
Sbjct: 362 RKEDRRAEL 370
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 163/286 (56%), Gaps = 21/286 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG-QSKGYGFVQFDNEESAQKAIEK 171
++++ +L I+ L FS G + V D+ +S GYG+V F++ + A++A+E+
Sbjct: 3 SLYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALEQ 62
Query: 172 LNGMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
+N +V +G +R +RD + KS N+++KNL+++ +++L +F +G I
Sbjct: 63 MN------YEVVMGRPIRIMWSQRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFGRI 116
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S + D +G SK +GFV+FEN + A RA++ +N K YVG +S+R+
Sbjct: 117 LSCKIAMDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRK---- 172
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
QN K+ KF N+Y+KN DDEKLK++F+ FG I S VM+D G S+G G
Sbjct: 173 ---SQNRKQ---KFN--NIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFG 224
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
FV + PE A A+ M+GK + + LY + AQRKE+R+ L++ L
Sbjct: 225 FVCYLNPEHAEAAVAAMHGKEIGGRSLYASRAQRKEERQEELKLRL 270
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 157/292 (53%), Gaps = 18/292 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + +LYD F+ G+++S ++ D S GYG+V+F N + A RA
Sbjct: 88 GLGNIFIKNLAKTIEQKELYDTFSLFGRILSCKIAMD-ENGNSKGYGFVHFENEECAKRA 146
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
++ +N + GK + V S R RK NI++KN D + L + F+ FG
Sbjct: 147 IQKVNNMSICGKVVYVGNFIPRSDRKSQNRKQKFNNIYVKNFPPETDDEKLKEMFTEFGE 206
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
I S V D G+SKG+GFV + N E A+ A+ ++G + + +Y RK+ER E+
Sbjct: 207 IKSACVMKDSEGKSKGFGFVCYLNPEHAEAAVAAMHGKEIGGRSLYASRAQRKEERQEEL 266
Query: 198 N----------KSKFT---NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+SK+ N+YVKNL + +E L++ F +YG I+SA VM D + +SK
Sbjct: 267 KLRLEKQKAERRSKYVSNVNLYVKNLDDEIDDERLKEIFSKYGPISSAKVMTDSNNRSKG 326
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F N + A +AV NG+ K YV AQ+K +R EL + Q++
Sbjct: 327 FGFVCFTNPEQATKAVTEANGRVEYSKPLYVAIAQRKEDRRAELAAKHTQHL 378
>gi|156846854|ref|XP_001646313.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156116988|gb|EDO18455.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 580
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/388 (53%), Positives = 288/388 (74%), Gaps = 2/388 (0%)
Query: 6 AQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 65
A+ + + GG + + SLYVG+L+ +V+++ LYD+F+ +G V S+RVCRD T+ SL
Sbjct: 33 AEVSSASNGGNSGTAVDSASLYVGELDPSVSEALLYDIFSPIGPVSSIRVCRDAVTKTSL 92
Query: 66 GYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDH 125
GY YVNF++ A+E LN+TP+ GKP R+M+S RDPS+RK+G+GNIFIKNL ID+
Sbjct: 93 GYAYVNFNDHDSGKVAIEKLNYTPIKGKPCRIMWSQRDPSMRKNGSGNIFIKNLHADIDN 152
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
KALHDTFS FGNILSCK+ATD G+SKG+GFV F+ + +A +AI+ +NGM+LN +VYV
Sbjct: 153 KALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDTAASEAIDAINGMMLNGLEVYVA 212
Query: 186 HFLRKQERDT--EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ +++R++ E K+ FTNVYVKN+ TEE+ ++ F ++G ITS + +D +GK +
Sbjct: 213 AHVSRKDRESKFEAAKANFTNVYVKNVDLEATEEEFEELFKKFGPITSISMEKDSEGKFR 272
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
FGFVN+EN + AA+AV+ LN +F ++ YVG+AQKK ER ELK Q+E+ E K+
Sbjct: 273 GFGFVNYENHESAAKAVDELNDLEFKSQKLYVGRAQKKYERLQELKKQYEEAKLEKMAKY 332
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
QG NL++KNLDD+IDDE LK+ F FG+ITS KVMR+ +G S+G GFV FS+PEEA+RA+
Sbjct: 333 QGVNLFVKNLDDTIDDELLKKEFESFGTITSVKVMRNETGKSKGFGFVCFSSPEEATRAI 392
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARL 391
E N ++V KPLYVALAQRK+ RR++L
Sbjct: 393 TEKNQQIVAGKPLYVALAQRKDVRRSQL 420
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 162/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L A++ + L+D F+ G ++S ++ D T +S G+G+V+F A+ A
Sbjct: 137 GSGNIFIKNLHADIDNKALHDTFSVFGNILSCKIATD-ETGKSKGFGFVHFEEDTAASEA 195
Query: 82 LEMLNFTPLNGKPIRVM--YSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNG + V S +D + K+ N+++KN+D + + F F
Sbjct: 196 IDAINGMMLNGLEVYVAAHVSRKDRESKFEAAKANFTNVYVKNVDLEATEEEFEELFKKF 255
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + D G+ +G+GFV ++N ESA KA+++LN + +++YVG +K ER
Sbjct: 256 GPITSISMEKDSEGKFRGFGFVNYENHESAAKAVDELNDLEFKSQKLYVGRAQKKYERLQ 315
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K +K+ N++VKNL ++ +E L+K F +GTITS VMR+ GKSK
Sbjct: 316 ELKKQYEEAKLEKMAKYQGVNLFVKNLDDTIDDELLKKEFESFGTITSVKVMRNETGKSK 375
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F + ++A RA+ N + K YV AQ+K R +L Q +
Sbjct: 376 GFGFVCFSSPEEATRAITEKNQQIVAGKPLYVALAQRKDVRRSQLAQQIQ 425
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 149/283 (52%), Gaps = 15/283 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L+D FS G + S +V D + S GY +V F++ +S + AI
Sbjct: 50 SASLYVGELDPSVSEALLYDIFSPIGPVSSIRVCRDAVTKTSLGYAYVNFNDHDSGKVAI 109
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
EKLN + K + +RD + K+ N+++KNL + L +F +G I
Sbjct: 110 EKLNYTPIKGKPCRI----MWSQRDPSMRKNGSGNIFIKNLHADIDNKALHDTFSVFGNI 165
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S + D GKSK FGFV+FE A+ A++A+NG + E YV + +RE
Sbjct: 166 LSCKIATDETGKSKGFGFVHFEEDTAASEAIDAINGMMLNGLEVYVAAHVSRKDRE---- 221
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+FE A K N+Y+KN+D +E+ ++LF FG ITS + +D G RG G
Sbjct: 222 SKFE------AAKANFTNVYVKNVDLEATEEEFEELFKKFGPITSISMEKDSEGKFRGFG 275
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
FV + E A++A+ E+N S+ LYV AQ+K +R L+
Sbjct: 276 FVNYENHESAAKAVDELNDLEFKSQKLYVGRAQKKYERLQELK 318
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ + D L F G + SV+V R+ T +S G+G+V FS+ +EA RA+
Sbjct: 335 VNLFVKNLDDTIDDELLKKEFESFGTITSVKVMRN-ETGKSKGFGFVCFSSPEEATRAIT 393
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 394 EKNQQIVAGKPLYVALAQRKDVRRSQLAQQIQARN 428
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/354 (55%), Positives = 269/354 (75%), Gaps = 4/354 (1%)
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
LY+ F+ G ++S+RVCRD++TRRSL Y Y+NF +A RAL+ +NF + G+PIR+M+
Sbjct: 2 LYEKFSPAGPILSIRVCRDVATRRSLCYAYINFQQPADAERALDTMNFEVIKGQPIRIMW 61
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS FGNILSCKV D +G S+G+GFV F
Sbjct: 62 SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHF 120
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEE 217
+ ++AQ+AI +NGMLLND++V+VGHF ++ER+ E+ +FTN+YVKNL E
Sbjct: 121 ETHDAAQRAISTMNGMLLNDRKVFVGHFKSRREREAELGARVMEFTNIYVKNLQVDVDER 180
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
LQ F ++G + S VMRD G S+ FGFVNFE ++A +AV +NGK+ + YVG+
Sbjct: 181 GLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYVGR 240
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
AQK+ ER+ ELK +FEQ ++ +++QG NLY+KNLDDSI+DEKL++ FSP+G ITS KV
Sbjct: 241 AQKRLERQNELKRRFEQMKQDRLNRYQGVNLYVKNLDDSINDEKLRKEFSPYGVITSAKV 300
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
M + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 301 MTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAIL 353
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 168/296 (56%), Gaps = 27/296 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F A RA
Sbjct: 72 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHDAAQRA 129
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + S R+ R++ G NI++KNL +D + L D F
Sbjct: 130 ISTMNGMLLNDRKVFVGHFKSRRE---REAELGARVMEFTNIYVKNLQVDVDERGLQDLF 186
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG +LS KV D +G S+G+GFV F+ E AQKA+ +NG ++ + +YVG ++ E
Sbjct: 187 SQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYVGRAQKRLE 246
Query: 193 RDTEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
R E+ N+ + N+YVKNL +S +E L+K F YG ITSA VM +G G
Sbjct: 247 RQNELKRRFEQMKQDRLNRYQGVNLYVKNLDDSINDEKLRKEFSPYGVITSAKVMTEG-G 305
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 306 HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 361
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 150/266 (56%), Gaps = 16/266 (6%)
Query: 128 LHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
L++ FS G ILS +V D+ +S Y ++ F A++A++ +N ++ + + +
Sbjct: 2 LYEKFSPAGPILSIRVCRDVATRRSLCYAYINFQQPADAERALDTMNFEVIKGQPIRI-- 59
Query: 187 FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
+RD + KS N+++KNL +S + L +F +G I S V+ D G S+ FG
Sbjct: 60 --MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFG 116
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
FV+FE D A RA+ +NG +D++ +VG + + ERE EL A +
Sbjct: 117 FVHFETHDAAQRAISTMNGMLLNDRKVFVGHFKSRREREAEL----------GARVMEFT 166
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N+Y+KNL +D+ L+ LFS FG + S KVMRD SG SRG GFV F EEA +A++ M
Sbjct: 167 NIYVKNLQVDVDERGLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHM 226
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQ 392
NGK V + LYV AQ++ +R+ L+
Sbjct: 227 NGKEVSGRLLYVGRAQKRLERQNELK 252
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/426 (49%), Positives = 296/426 (69%), Gaps = 53/426 (12%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGEKAL 117
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 118 EELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 178 VAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 237
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ TE+D ++ F ++G +TS+ + RD +GKS+ FGFVNF + A++AV
Sbjct: 238 NFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAV 297
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNLDD +DD+
Sbjct: 298 DDLNGKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDD 357
Query: 321 KLKQLFSPFGSITSCKVMRD-PS------------------------------------- 342
KL+Q+FS FG ITS KVMR+ P+
Sbjct: 358 KLRQMFSEFGPITSAKVMRETPTEGDEDKKEETQDDKEKENKEEAKEEANEETKEGEEAK 417
Query: 343 -------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
G S+G GFV FS P++A++A+ EMN +M+ +KPLYVALAQRK+ R++
Sbjct: 418 DDKKTEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKS 477
Query: 390 RLQVCL 395
+L+ +
Sbjct: 478 QLEASI 483
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 196/376 (52%), Positives = 278/376 (73%), Gaps = 2/376 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RALE
Sbjct: 40 ASLYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 99
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + G+P R+M+S RDP+LRK+G GNIFIKNLD++ID+KALHDTF+AFG ILSCKV
Sbjct: 100 HLNYSAIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDESIDNKALHDTFAAFGEILSCKV 159
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT--EINKSK 201
D +G+S+G+ FV + E+A AI+ ++GM+LNDK+V+VGH + K+ER + E ++
Sbjct: 160 GVDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKVFVGHHIGKKERQSKAEEQRAH 219
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNV+VKN+ S TE++ + ++G S + D +GKSK FGFVN+ + + A +AV+
Sbjct: 220 FTNVFVKNVDLSVTEKEFEDLVSKFGETVSIALSLDEEGKSKGFGFVNYVSHEAAEKAVD 279
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN K+ + ++ + G+AQK+ ER+ EL+ E+ +E K G NLY+KNLDD DD++
Sbjct: 280 ELNDKEVNGQKLWAGRAQKRVERDTELRKTIEEKRQEFDAKSAGVNLYVKNLDDEWDDDR 339
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ F FG+ITSCKVM+D G+SR GFV +S+PEEA++A+ EMNGKM+ SKPLYVALA
Sbjct: 340 LRAEFDSFGTITSCKVMKDERGVSRNFGFVCYSSPEEATKAVSEMNGKMIGSKPLYVALA 399
Query: 382 QRKEDRRARLQVCLLQ 397
QR+E RR L+ + Q
Sbjct: 400 QRREARRQALESQIAQ 415
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 162/292 (55%), Gaps = 21/292 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F G+++S +V D +S G+ +V++ + A A
Sbjct: 126 GQGNIFIKNLDESIDNKALHDTFAAFGEILSCKVGVD-EDGKSRGFAFVHYQTGEAADAA 184
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA-------GNIFIKNLDKAIDHKALHDTFSA 134
++ ++ LN K + V + H R+S A N+F+KN+D ++ K D S
Sbjct: 185 IKGVDGMMLNDKKVFVGH-HIGKKERQSKAEEQRAHFTNVFVKNVDLSVTEKEFEDLVSK 243
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +S ++ D G+SKG+GFV + + E+A+KA+++LN +N ++++ G ++ ERD
Sbjct: 244 FGETVSIALSLDEEGKSKGFGFVNYVSHEAAEKAVDELNDKEVNGQKLWAGRAQKRVERD 303
Query: 195 TEINK------------SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
TE+ K S N+YVKNL + ++ L+ F +GTITS VM+D G S
Sbjct: 304 TELRKTIEEKRQEFDAKSAGVNLYVKNLDDEWDDDRLRAEFDSFGTITSCKVMKDERGVS 363
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ FGFV + + ++A +AV +NGK K YV AQ++ R L+ Q Q
Sbjct: 364 RNFGFVCYSSPEEATKAVSEMNGKMIGSKPLYVALAQRREARRQALESQIAQ 415
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEASR 361
GA+LY+ LD S+ + L ++F+ G + S +V RD ++R G +V + + R
Sbjct: 39 GASLYVGELDPSVTEAMLFEIFNIIGPVASIRVCRD--AVTRRSLGYAYVNYLNAADGER 96
Query: 362 ALLEMNGKMVVSKPLYVALAQR 383
AL +N + +P + +QR
Sbjct: 97 ALEHLNYSAIKGRPCRIMWSQR 118
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 282/372 (75%), Gaps = 2/372 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVNF ++ +A+
Sbjct: 50 SASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAI 109
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+P R+M+S RDPSLR++G GNIFIKNL AID+KALHDTF+AFG ILSCK
Sbjct: 110 EDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCK 169
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD G SK +GFV ++ E+A+ AIE +NGMLLND++VYVG + K++R+++ K+
Sbjct: 170 VATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKA 229
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY KN+ +EE+ +K F YG ITS + +D +GKSK FGFVNFEN + A +AV
Sbjct: 230 NFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAV 289
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL+IKNLDD+ID E
Sbjct: 290 DELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSE 349
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFGSITS +VM D +G S+G GFV FS+PEEA++A+ EMN +M+ KPLYVAL
Sbjct: 350 KLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVAL 409
Query: 381 AQRKEDRRARLQ 392
AQRK+ RR++L+
Sbjct: 410 AQRKDVRRSQLE 421
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 160/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + L+D F G+++S +V D S +G+V++ A+ A A
Sbjct: 137 GDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATD-DMGISKCFGFVHYETAEAAEAA 195
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V S +D + K+ N++ KN+D + F A+
Sbjct: 196 IENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAY 255
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + D G+SKG+GFV F+N ESA KA+++LN +N +++YVG +K+ER
Sbjct: 256 GKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLE 315
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K SK+ N+++KNL ++ E L++ F +G+ITSA VM D GKSK
Sbjct: 316 ELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSK 375
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F + ++A +A+ +N + K YV AQ+K R +L+ Q +
Sbjct: 376 GFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQ 425
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 297 KEAADKFQ----GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFV 351
+EAAD Q A+LY+ L+ S+++ L ++FSP G + S +V RD + S G +V
Sbjct: 38 EEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYV 97
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F E+ +A+ ++N ++ +P + +QR R
Sbjct: 98 NFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLR 134
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/386 (53%), Positives = 283/386 (73%), Gaps = 6/386 (1%)
Query: 11 VNGG--GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYG 68
++GG G + T SLYVGDL +VT+S LY+ F+ G ++S+RVCRD T+ SLGY
Sbjct: 30 LSGGSHGHSTPNSPTASLYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYA 89
Query: 69 YVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKAL 128
YVNF + A L +N + G PIR+M+S RDP RK G GN+F+KNL+K+ID+KAL
Sbjct: 90 YVNFQHRAHAEWVLATMNLDVIKGNPIRIMWSQRDPGQRKRGVGNVFVKNLEKSIDNKAL 149
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
+DTFS FG ILSCKV +D NG SKGYGFV F+ +ESA KAIEK+NGMLLN+ +V+VG F
Sbjct: 150 YDTFSTFGRILSCKVISDENG-SKGYGFVHFETQESAGKAIEKMNGMLLNNLKVFVGRFK 208
Query: 189 RKQERDTEIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
++ER++E+ K+K +TN+Y+KN E+ ++ L + F +YG S VM D G+SK FG
Sbjct: 209 SRRERESELGVKAKDYTNIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKGFG 268
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
FV+F++ +DA AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ + ++QG
Sbjct: 269 FVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHIRYQGV 328
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
NLYIKNLDD+I+DE L++ FSPFG+ITS KVM + +G S+G GFV FS+ ++A++A EM
Sbjct: 329 NLYIKNLDDTINDEHLRKEFSPFGTITSAKVMME-NGRSKGFGFVCFSSSKDAAKASREM 387
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQ 392
NGK+V SKPLYV+LAQRKE+RR L+
Sbjct: 388 NGKLVASKPLYVSLAQRKEERRMHLK 413
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 172/292 (58%), Gaps = 27/292 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +LE ++ + LYD F+ G+++S +V D S GYG+V+F + A +A
Sbjct: 131 GVGNVFVKNLEKSIDNKALYDTFSTFGRILSCKVISD--ENGSKGYGFVHFETQESAGKA 188
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+E +N LN + V S R+ R+S G NI+IKN + +D + L + F
Sbjct: 189 IEKMNGMLLNNLKVFVGRFKSRRE---RESELGVKAKDYTNIYIKNFGENMDDQRLTEIF 245
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+ +G LS KV TD G+SKG+GFV F + E AQ A++ +NG LN KQ+YVG +K+E
Sbjct: 246 AKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRAQKKRE 305
Query: 193 RDTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
R TE+ + + N+Y+KNL ++ +E L+K F +GTITSA VM + +G
Sbjct: 306 RQTELKRHFEQIKQNQHIRYQGVNLYIKNLDDTINDEHLRKEFSPFGTITSAKVMME-NG 364
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+SK FGFV F +S DAA+A +NGK K YV AQ+K ER + LK+Q+
Sbjct: 365 RSKGFGFVCFSSSKDAAKASREMNGKLVASKPLYVSLAQRKEERRMHLKNQY 416
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 20/196 (10%)
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAAR 258
S ++YV +L TE L + F G I S V RD S + +VNF++ A
Sbjct: 42 SPTASLYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYAYVNFQHRAHA-- 99
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA-NLYIKNLDDSI 317
EW + + ++ + Q ++ + +G N+++KNL+ SI
Sbjct: 100 -------------EWVLATMNLDVIKGNPIRIMWSQ--RDPGQRKRGVGNVFVKNLEKSI 144
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++ L FS FG I SCKV+ D +G S+G GFV F T E A +A+ +MNG ++ + ++
Sbjct: 145 DNKALYDTFSTFGRILSCKVISDENG-SKGYGFVHFETQESAGKAIEKMNGMLLNNLKVF 203
Query: 378 VALAQRKEDRRARLQV 393
V + + +R + L V
Sbjct: 204 VGRFKSRRERESELGV 219
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/371 (53%), Positives = 276/371 (74%), Gaps = 3/371 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL+ +VT+S LY++F+++GQV S+RVCRB T++SL Y YVN+ +EA AL+
Sbjct: 60 ASLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHALD 119
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
L F + GK R+M+S RDPS+RK G GN+FIKNL ID+K L+DTFS FG ILSCK+
Sbjct: 120 TLAFCDIKGKQCRIMWSQRDPSMRKKGTGNVFIKNLHPDIDNKTLYDTFSTFGKILSCKI 179
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SK 201
ATD +G SKG+GFV +D+ ESA+ AIE +NGMLLN+ +VYV + +++R++++ +
Sbjct: 180 ATDEHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVYVAPHIPRKDRESKMQEMIKN 239
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKN TE+ L++ F YG +TS + D +GK++ FGFVNFE+ +AA+AV+
Sbjct: 240 FTNVYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKARGFGFVNFEDHXEAAKAVD 299
Query: 262 ALNGKKFD-DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
ALN K+ + + YVG+AQKK ERE L+ Q++Q +E K+QG NL++KNLDD+IDD
Sbjct: 300 ALNEKELEGGRILYVGRAQKKREREESLRKQWQQARQERISKYQGVNLFVKNLDDTIDDT 359
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK+ F+P+G ITS KVM + +G SRG GFV ++ PEEA+RA+ EM+ +MV+ KPLYVAL
Sbjct: 360 KLKEEFAPYGKITSAKVMTNDAGKSRGFGFVCYTKPEEATRAINEMHQRMVMGKPLYVAL 419
Query: 381 AQRKEDRRARL 391
AQRKE R +L
Sbjct: 420 AQRKEVRHNQL 430
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 158/293 (53%), Gaps = 22/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
GT ++++ +L ++ + LYD F+ G+++S ++ D S G+G+V++ +A+ A A
Sbjct: 146 GTGNVFIKNLHPDIDNKTLYDTFSTFGKILSCKIATD-EHGHSKGFGFVHYDDAESAKAA 204
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA-------GNIFIKNLDKAIDHKALHDTFSA 134
+E +N LN + V H R+S N+++KN + L + F A
Sbjct: 205 IENVNGMLLNNMEVYVA-PHIPRKDRESKMQEMIKNFTNVYVKNFGPEMTEDQLREMFEA 263
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV-YVGHFLRKQER 193
+G + S + TD G+++G+GFV F++ A KA++ LN L ++ YVG +K+ER
Sbjct: 264 YGKVTSTYLPTDNEGKARGFGFVNFEDHXEAAKAVDALNEKELEGGRILYVGRAQKKRER 323
Query: 194 DTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+ + K SK+ N++VKNL ++ + L++ F YG ITSA VM + GK
Sbjct: 324 EESLRKQWQQARQERISKYQGVNLFVKNLDDTIDDTKLKEEFAPYGKITSAKVMTNDAGK 383
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
S+ FGFV + ++A RA+ ++ + K YV AQ+K R +L QF+Q
Sbjct: 384 SRGFGFVCYTKPEEATRAINEMHQRMVMGKPLYVALAQRKEVRHNQLSQQFQQ 436
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 108/204 (52%), Gaps = 17/204 (8%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFV 248
K +D++ N+ F ++YV +L S TE DL + F + G ++S V RB KS C+ +V
Sbjct: 47 KDTKDSKDNEQTFASLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYV 106
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
N++ ++A A++ L K+ + +Q+ + +M++ N+
Sbjct: 107 NYQKREEAEHALDTLAFCDIKGKQCRIMWSQR------------DPSMRKKGT----GNV 150
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
+IKNL ID++ L FS FG I SCK+ D G S+G GFV + E A A+ +NG
Sbjct: 151 FIKNLHPDIDNKTLYDTFSTFGKILSCKIATDEHGHSKGFGFVHYDDAESAKAAIENVNG 210
Query: 369 KMVVSKPLYVALAQRKEDRRARLQ 392
++ + +YVA ++DR +++Q
Sbjct: 211 MLLNNMEVYVAPHIPRKDRESKMQ 234
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/335 (59%), Positives = 259/335 (77%), Gaps = 4/335 (1%)
Query: 59 LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
+ TRRSLGY YVNF +A RAL+ +NF + GKP+R+M+S RDP LRKSG GNIFIKN
Sbjct: 1 MITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPPLRKSGVGNIFIKN 60
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLN
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 119
Query: 179 DKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
D++V VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++G S VM
Sbjct: 120 DRKVSVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 179
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ
Sbjct: 180 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 239
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+P
Sbjct: 240 QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSP 298
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
EEA++A+ MNG++V +KPLYVALAQRKE+R+A L
Sbjct: 299 EEATKAVTGMNGRIVATKPLYVALAQRKEERQAHL 333
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 52 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 109
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 110 IEKMNGMLLNDRKVSVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 169
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 170 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 229
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 230 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 287
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 288 KGFGFVCFSSPEEATKAVTGMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 341
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 143/246 (58%), Gaps = 15/246 (6%)
Query: 147 LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVY 206
+ +S GY +V F A++A++ +N ++ K V + +RD + KS N++
Sbjct: 2 ITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW----SQRDPPLRKSGVGNIF 57
Query: 207 VKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK 266
+KNL +S + L +F +G I S V+ D +G SK +GFV+FE + A RA+E +NG
Sbjct: 58 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGM 116
Query: 267 KFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLF 326
+D++ VG+ + + ERE EL + A +F N+YIKN + +DDE+LK LF
Sbjct: 117 LLNDRKVSVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLF 166
Query: 327 SPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
FG S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +
Sbjct: 167 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 226
Query: 387 RRARLQ 392
R+ L+
Sbjct: 227 RQTELK 232
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/436 (48%), Positives = 291/436 (66%), Gaps = 56/436 (12%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++++
Sbjct: 40 APAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSS 99
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +ALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 100 EDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAF 159
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K+ER +
Sbjct: 160 GNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMS 219
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+YVKN+ +++D + F ++G ITSA + RD GKS+ FGFVN+
Sbjct: 220 KFEEMKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKH 279
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ A+ AV+ALN F ++ YVG+AQKK ERE EL+ Q+E E K+QG NLYIKNL
Sbjct: 280 EAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNL 339
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD--PSGIS-------------------------- 345
+D +DDEKL+ +F+PFG+ITS KVMRD P+ S
Sbjct: 340 NDDVDDEKLRDMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDETKEETEKPEEAKDESK 399
Query: 346 ------------------------RGSGF--VAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ GF V FS P+EA++A+ EMN KM+ +KPLYVA
Sbjct: 400 EDSDDKKDEKADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVA 459
Query: 380 LAQRKEDRRARLQVCL 395
LAQRK+ R+ +L+ +
Sbjct: 460 LAQRKDVRKNQLEATI 475
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 268/373 (71%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VTD QL+D F+ + SVR+CRD ST RSL YGYVNF + Q+A A+E+
Sbjct: 15 SLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAIEV 74
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N + LNG+ IRVM+S RD RKSG GN+F+KNL +I+ L + F FGN+LS KVA
Sbjct: 75 MNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVA 134
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
T +G+SKGYGFVQF++EESA AIE LNG + DKQ+YVG F+RK +R K+TN
Sbjct: 135 TSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQIYVGKFVRKSDRVLANPDIKYTN 194
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YVKNL EE LQ+ F E+G I+S ++ RD +G S+ FGF+NFENSDDA RA+E LN
Sbjct: 195 LYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLN 254
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G + K Y+ +AQKK+ERE L+ +E+ KE K++G+N+Y+KN+DD + DE+L++
Sbjct: 255 GSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDEELRE 314
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS FG+ITS K+MRD GI++G GFV FS P+EA RA+ + G M KPLY+A+AQRK
Sbjct: 315 RFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRK 374
Query: 385 EDRRARLQVCLLQ 397
EDR+ +L++ Q
Sbjct: 375 EDRQMQLKLQFAQ 387
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 172/300 (57%), Gaps = 23/300 (7%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+A + G +++V +L ++ L +LF + G V+S +V +S GYG+V F +
Sbjct: 94 ADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATS-DDGKSKGYGFVQFESE 152
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHR-------DPSLRKSGAGNIFIKNLDKAIDHKAL 128
+ A A+E LN + K I V R +P ++ + N+++KNLD I + L
Sbjct: 153 ESANAAIESLNGFTVGDKQIYVGKFVRKSDRVLANPDIKYT---NLYVKNLDPEIGEEHL 209
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
+ FS FG I S ++ D NG S+G+GF+ F+N + A++A+E LNG L K +Y+
Sbjct: 210 QEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLNGSQLGSKVIYIARAQ 269
Query: 189 RKQERDT------------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
+K ER+ ++ K K +NVYVKN+ + T+E+L++ F ++GTITS+ +MR
Sbjct: 270 KKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDEELRERFSQFGTITSSKLMR 329
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
D G +K FGFV F N D+A RAV L G F K Y+ AQ+K +R+++LK QF Q +
Sbjct: 330 DDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRL 389
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/424 (49%), Positives = 288/424 (67%), Gaps = 54/424 (12%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++ A + RALE L
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N+T + G+P R+M+S RDP LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ 174
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFT 203
D N SKGYGFV ++ E+A +AI+ +NGMLLN+K+V+VGH + K++R +++ K+ FT
Sbjct: 175 DENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFT 234
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEA 262
N+YVKN+ TT+ + ++ F +YG ITSA + D + GK++ FGFVN+ +DA +AVE
Sbjct: 235 NIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVEE 294
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN F ++ YVG+AQKK ERE EL+ Q+E +E + K+ G NLY+KNL D IDD++L
Sbjct: 295 LNDSDFKGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDEL 354
Query: 323 KQLFSPFGSITSCKVMRD--PS-------------------------------------- 342
+++F P+G+ITS KVMRD P+
Sbjct: 355 RKVFEPYGAITSAKVMRDTLPADGSETPAKKEGDAEEKEAEPEKDGEKKDDVDDLSKKLD 414
Query: 343 -----------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
G S+G GFV FS P+EA++A+ E+N KMV KPLYVALAQRKE R+++L
Sbjct: 415 TVTIQGEKKLLGKSKGFGFVCFSNPDEATKAVTELNQKMVHGKPLYVALAQRKEVRKSQL 474
Query: 392 QVCL 395
+ +
Sbjct: 475 EASI 478
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 282/372 (75%), Gaps = 2/372 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVNF + +A+
Sbjct: 50 SASLYVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQAI 109
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+P R+M+S RDPSLR++G GNIFIKNL AID+KALHDTFSAFG ILSCK
Sbjct: 110 EDLNYSLIEGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGRILSCK 169
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD G SK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+
Sbjct: 170 VATDELGNSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKFEEMKA 229
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNV+VKNL+ T+++L++ F YG ITS+ + +D +GKSK FGFVNF+N +DA +AV
Sbjct: 230 NFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKAV 289
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + YVG+AQKK ER EL+ Q+E E K+QG NL+IKNLDD+ID E
Sbjct: 290 DELNNKEIAGQPIYVGRAQKKRERMEELRRQYEATKLEKLSKYQGVNLFIKNLDDTIDSE 349
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+ F PFG+ITS +VM D G S+G GFV FS+PEEA++A+ EMN +MV KPLYVAL
Sbjct: 350 KLENEFKPFGNITSARVMVDEQGKSKGFGFVCFSSPEEATKAITEMNQRMVEGKPLYVAL 409
Query: 381 AQRKEDRRARLQ 392
AQRK+ RR++L+
Sbjct: 410 AQRKDVRRSQLE 421
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 160/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + L+D F+ G+++S +V D S +G+V++ A+ A A
Sbjct: 137 GEGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-ELGNSKCFGFVHYETAEAAEAA 195
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V S +D + K+ N+F+KNL + L + FSA+
Sbjct: 196 IENVNGMLLNDREVFVGKHVSKKDRESKFEEMKANFTNVFVKNLAPEYTDQELKELFSAY 255
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + DL G+SKG+GFV FDN A KA+++LN + + +YVG +K+ER
Sbjct: 256 GPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKAVDELNNKEIAGQPIYVGRAQKKRERME 315
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ + SK+ N+++KNL ++ E L+ F +G ITSA VM D GKSK
Sbjct: 316 ELRRQYEATKLEKLSKYQGVNLFIKNLDDTIDSEKLENEFKPFGNITSARVMVDEQGKSK 375
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F + ++A +A+ +N + + K YV AQ+K R +L+ Q +
Sbjct: 376 GFGFVCFSSPEEATKAITEMNQRMVEGKPLYVALAQRKDVRRSQLEQQIQ 425
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/404 (51%), Positives = 284/404 (70%), Gaps = 39/404 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA-- 79
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F QEAA
Sbjct: 26 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFET-QEAAER 82
Query: 80 ------------------------------RALEMLNFTPLNGKPIRVMYSHRDPSLRKS 109
RAL+ +NF + GKP+R+M+S RDPSLRKS
Sbjct: 83 AIEKMNGMLLNXXXXEASNIDSENVFPAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKS 142
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
G GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AI
Sbjct: 143 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAI 201
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYG 227
EK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++G
Sbjct: 202 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 261
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S VM D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ E
Sbjct: 262 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 321
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347
LK +FEQ ++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G
Sbjct: 322 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKG 380
Query: 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
GFV FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 381 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 424
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/335 (46%), Positives = 210/335 (62%), Gaps = 39/335 (11%)
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ----------------------- 181
D NG SKGYGFV F+ +E+A++AIEK+NGMLLN
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNXXXXEASNIDSENVFPAAERALDTMN 119
Query: 182 --VYVGHFLR--KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
V G +R +RD + KS N+++KNL +S + L +F +G I S V+ D
Sbjct: 120 FDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 179
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
+G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 180 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR------ 232
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPE 357
A +F N+YIKN + +DDE+LK LF FG S KVM D SG S+G GFV+F E
Sbjct: 233 --AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 288
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 289 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 323
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 143 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 200
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 201 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 260
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 261 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 320
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 321 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 378
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 379 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 432
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/365 (54%), Positives = 267/365 (73%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVG+L +V+D QL D F++ + SVRVCRD ST RSL YGYVNF + ++A RA+
Sbjct: 12 TASLYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFISPEDAIRAI 71
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E N TPLNGK +RVM+SHRDP R++G GN+++KNL ++ID+ L + F FG +LSCK
Sbjct: 72 ETKNHTPLNGKLMRVMWSHRDPDARRNGIGNVYVKNLSESIDNVGLQELFGEFGTVLSCK 131
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
VAT +G+SKG+GFVQF++E+SA AIEKLNG ++ DKQ+YVG F++K +R +K+
Sbjct: 132 VATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYVGKFVKKSDRVLPSPDAKY 191
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+YVKNL TEE LQ+ F E+G I S + RD G S+ FGFVNFEN DDA A+E
Sbjct: 192 TNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMER 251
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NG + K YVG+AQK++ERE L+ QFE+ KE KF+G+N+Y+KN+DD + DE+L
Sbjct: 252 MNGTELGSKVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEEL 311
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS G+ITS K+M+D G S+G GFV FS+ EEAS+A+ +G M KPLYVA+AQ
Sbjct: 312 REHFSQCGTITSAKLMKDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYVAIAQ 371
Query: 383 RKEDR 387
RKE+R
Sbjct: 372 RKEER 376
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 108/285 (37%), Positives = 164/285 (57%), Gaps = 17/285 (5%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + G ++YV +L ++ + L +LF + G V+S +V +S G+G+V F +
Sbjct: 93 PDARRNGIGNVYVKNLSESIDNVGLQELFGEFGTVLSCKVA-TFEDGKSKGHGFVQFESE 151
Query: 76 QEAARALEMLNFTPLNGKPIRV--MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDT 131
A A+E LN + + K I V D L A N+++KNLD I + L +
Sbjct: 152 DSANSAIEKLNGSIVGDKQIYVGKFVKKSDRVLPSPDAKYTNLYVKNLDPGITEELLQEK 211
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG------ 185
FS FG I+S +A D G S+G+GFV F+N + A+ A+E++NG L K +YVG
Sbjct: 212 FSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERMNGTELGSKVLYVGRAQKRA 271
Query: 186 ---HFLRKQ---ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
LR+Q +R +I K K +NVYVKN+ + T+E+L++ F + GTITSA +M+D
Sbjct: 272 EREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEELREHFSQCGTITSAKLMKDDK 331
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
G+SK FGFV F +S++A++AV +G F K YV AQ+K ER
Sbjct: 332 GRSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYVAIAQRKEER 376
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 102/194 (52%), Gaps = 17/194 (8%)
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENS 253
+ I+ + ++YV L ++ L +F E+ T+ S V RD G+S C+G+VNF +
Sbjct: 5 STISATATASLYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFISP 64
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA RA+E N + K V + + + A + N+Y+KNL
Sbjct: 65 EDAIRAIETKNHTPLNGKLMRVMWSHRDPD----------------ARRNGIGNVYVKNL 108
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
+SID+ L++LF FG++ SCKV G S+G GFV F + + A+ A+ ++NG +V
Sbjct: 109 SESIDNVGLQELFGEFGTVLSCKVATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGD 168
Query: 374 KPLYVALAQRKEDR 387
K +YV +K DR
Sbjct: 169 KQIYVGKFVKKSDR 182
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/399 (51%), Positives = 279/399 (69%), Gaps = 25/399 (6%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD-----LSTRRSLGYGYV 70
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD L TRRSLGY Y+
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRFLPTRRSLGYAYI 62
Query: 71 NF-------SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAI 123
NF AQ A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +I
Sbjct: 63 NFQQPADGEEQAQRAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSI 122
Query: 124 DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
D+KAL+DTFS FGNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+
Sbjct: 123 DNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVF 181
Query: 184 VGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
VGHF ++ER+ E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G
Sbjct: 182 VGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGH 241
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
S+CFGFVNFE ++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++
Sbjct: 242 SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLR 301
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVM---------RDPSGISRGSGFVA 352
++QG NLY+KNLDDSIDD+KL++ FSP+G ITS K + DP G S ++
Sbjct: 302 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKGVGAGYPFWGSADPVGTCSPSAALS 361
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
EEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 362 -GLKEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAIL 399
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 165/303 (54%), Gaps = 30/303 (9%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL------NGQSKGYG 155
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRFLPTRRSLGYA 60
Query: 156 FVQF----DNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINKSKFTNVYVKN 209
++ F D EE AQ+A L+ M + ++ G +R +RD + KS N+++KN
Sbjct: 61 YINFQQPADGEEQAQRAERALDTM---NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKN 117
Query: 210 LSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD 269
L +S + L +F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +
Sbjct: 118 LEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLN 176
Query: 270 DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPF 329
D++ +VG + + ERE EL A + N+Y+KNL +D++ L+ LFS F
Sbjct: 177 DRKVFVGHFKSRREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQF 226
Query: 330 GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
G + S KVMRD SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+
Sbjct: 227 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 286
Query: 390 RLQ 392
L+
Sbjct: 287 ELK 289
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 36/305 (11%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 109 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHEAAQQA 166
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + S R+ R++ G NI++KNL +D + L D F
Sbjct: 167 INTMNGMLLNDRKVFVGHFKSRRE---REAELGARALEFTNIYVKNLPVDVDEQGLQDLF 223
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ E
Sbjct: 224 SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVE 283
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG- 238
R E+ K +F N+YVKNL +S ++ L+K F YG ITSA + G
Sbjct: 284 RQNEL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKGVGAGY 342
Query: 239 ------DGKSKCFGFVNFEN-SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
D C ++A +AV +NG+ K YV AQ+K ER+ L +Q
Sbjct: 343 PFWGSADPVGTCSPSAALSGLKEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQ 402
Query: 292 FEQNM 296
+ Q +
Sbjct: 403 YMQRL 407
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/381 (54%), Positives = 281/381 (73%), Gaps = 5/381 (1%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GG N + SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+
Sbjct: 54 GGVAEN---SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYH 110
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +A++ LN++ + +P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFS
Sbjct: 111 KFEDGEKAIDELNYSLIENRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFS 170
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFG ILSCKVATD GQSK +GFV ++ E+A+ AIE +NGMLLND++VYVG + K++R
Sbjct: 171 AFGRILSCKVATDDLGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHVSKKDR 230
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+++ K+ +TN+YVKN+ +E++ + F YG ITS + +D DGKSK FGFVN+E
Sbjct: 231 ESKFEEMKANYTNIYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNYE 290
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
A AVEALN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++K
Sbjct: 291 EHKSAVEAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFVK 350
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDD ID EKL++ F PFG+ITS KVM D +G SRG GFV FSTPEEA++A+ EMN +MV
Sbjct: 351 NLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSRGFGFVCFSTPEEATKAITEMNQRMV 410
Query: 372 VSKPLYVALAQRKEDRRARLQ 392
KPLYVALAQRK+ RR++L+
Sbjct: 411 NGKPLYVALAQRKDVRRSQLE 431
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 165/296 (55%), Gaps = 19/296 (6%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + G ++++ +L + + L+D F+ G+++S +V D +S +G+V++ A
Sbjct: 141 PSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-DLGQSKCFGFVHYETA 199
Query: 76 QEAARALEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALH 129
+ A A+E +N LN + + V S +D + K+ NI++KN+D K
Sbjct: 200 EAAEAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANYTNIYVKNIDLEFSEKEFE 259
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
D F+ +G I S + D +G+SKG+GFV ++ +SA +A+E LN +N +++YVG +
Sbjct: 260 DLFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVEAVEALNDKEINGQKIYVGRAQK 319
Query: 190 KQERDTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K+ER E+ K SK+ N++VKNL + E L++ F +GTITSA VM D
Sbjct: 320 KRERTEELKKQYEAIRLEKLSKYQGVNLFVKNLDDQIDSEKLEEEFKPFGTITSAKVMVD 379
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
GKS+ FGFV F ++A +A+ +N + + K YV AQ+K R +L+ Q +
Sbjct: 380 DAGKSRGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQ 435
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/375 (57%), Positives = 274/375 (73%), Gaps = 4/375 (1%)
Query: 21 FGTT-SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
FG++ S+YVG+LEA+VT+ QL DLF+Q VVSVR+C D T RSLGY YVNF + ++A
Sbjct: 27 FGSSVSVYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAK 86
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
ALE NFT +NGK IRVM+S+RDP+LR+SGA N+FIKNL+ I K+LH FS FG IL
Sbjct: 87 VALEYFNFTVVNGKSIRVMFSNRDPTLRRSGAANLFIKNLEPNIVAKSLHQMFSRFGIIL 146
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND--KQVYVGHFLRKQERDTEI 197
SCKVATDLNG+SKGYGFVQF +EESA+ A+ LNG L N KQ+YV F+R++ER
Sbjct: 147 SCKVATDLNGKSKGYGFVQFVSEESAKDAMNALNGKLANGNGKQLYVDLFIRREERQHIG 206
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
SKFTNVY KNL + T++DL + F +GTITSAVVM+DGDG+SKCFGFVN+E ++ A
Sbjct: 207 GASKFTNVYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGDGESKCFGFVNYEKTEYAE 266
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
AVE LNGK D YVG+A++K ER+ ELK +F++ + K +G NLY+KNLD SI
Sbjct: 267 EAVEKLNGKIISDVALYVGRAKRKQERQAELKEKFDKERNDKIRKSKGCNLYLKNLDCSI 326
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG-KMVVSKPL 376
DDE L+ LF F I +CKVM D G S+G GFV F+T E A++A+ N K+V +K L
Sbjct: 327 DDEYLRNLFGRFDDIGTCKVMVDSEGRSKGFGFVLFTTIEAANKAVSXRNERKLVGTKLL 386
Query: 377 YVALAQRKEDRRARL 391
YV +AQRKE+R A L
Sbjct: 387 YVCVAQRKEERSAIL 401
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 157/283 (55%), Gaps = 19/283 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ NL+ ++ + L D FS ++S ++ D + G+S GY +V F + E A+ A+E
Sbjct: 32 SVYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAKVALEY 91
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
N ++N K + V RD + +S N+++KNL + + L + F +G I S
Sbjct: 92 FNFTVVNGKSIRVMF----SNRDPTLRRSGAANLFIKNLEPNIVAKSLHQMFSRFGIILS 147
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK--KFDDKEWYVGKAQKKSERELELK 289
V D +GKSK +GFV F + + A A+ ALNGK + K+ YV ++ ER
Sbjct: 148 CKVATDLNGKSKGYGFVQFVSEESAKDAMNALNGKLANGNGKQLYVDLFIRREER----- 202
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
Q++ A KF N+Y KNL D+ L ++F+PFG+ITS VM+D G S+ G
Sbjct: 203 ----QHIG-GASKF--TNVYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGDGESKCFG 255
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
FV + E A A+ ++NGK++ LYV A+RK++R+A L+
Sbjct: 256 FVNYEKTEYAEEAVEKLNGKIISDVALYVGRAKRKQERQAELK 298
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/371 (54%), Positives = 263/371 (70%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
SLYVGDL + V D L++ F + + SVRVCRD T +SL YGYVNF + Q+A RA+
Sbjct: 11 PASLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRAM 70
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
++ N + LNGK IRVM+SH DPS RKSG GN+F+KNL +ID+ LHD F +GNILS K
Sbjct: 71 KLKNNSYLNGKVIRVMWSHPDPSARKSGRGNVFVKNLAGSIDNAGLHDLFQKYGNILSSK 130
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
V +G+SKGYGFVQF++EESA AIEKLNG + DKQ+YVG F+RK +R +K+
Sbjct: 131 VVMSGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIYVGKFVRKGDRILPGYDAKY 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+Y+KNL TE LQ+ F +G I S V+ +D +G SK F FVN+EN DDA +A+EA
Sbjct: 191 TNLYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDARKAMEA 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NG KF K YV +AQKK+ERE L QFE+ KE K+Q +NLY+KN+DD + D++L
Sbjct: 251 MNGLKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKEL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+ LFS G+ITS KVMRD GIS+G GFV FS PEEA++A+ NG M KPLY+A+AQ
Sbjct: 311 RDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLYIAIAQ 370
Query: 383 RKEDRRARLQV 393
RK DR+ +L +
Sbjct: 371 RKMDRKTQLNL 381
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ ++LYV +++ +VTD +L DLF+ G + SV+V RD S G+G+V FSN +EA
Sbjct: 290 KYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRD-DKGISKGFGFVCFSNPEEAN 348
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
+A+ N + KP+ + + R
Sbjct: 349 KAVRSFNGCMFHRKPLYIAIAQR 371
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/367 (53%), Positives = 266/367 (72%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
SLYVGDL +V+DS L D F++ + SVRVC+D ST +SL YGY+NF + Q+A RA
Sbjct: 10 APASLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRA 69
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+E+ N + LNGK +RVM+S RDP RKS GN+F+KNL ++ID+ L D F +GNILS
Sbjct: 70 IELKNNSTLNGKAMRVMWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSS 129
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KV T +G+SKGYGFVQF++EES++ AIEKLNG + DK++YVG F++K +R ++
Sbjct: 130 KVVTSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRILPGPDAR 189
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
+TN+Y+KNL +E LQ+ F +G I S V+ +D +G SK FGFVN++N DDA +A+E
Sbjct: 190 YTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAME 249
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
A+NG + K YV +AQKK+ERE L HQFE+ KE K++G+N+Y+KN+DD + DE+
Sbjct: 250 AMNGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEE 309
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ FS G+ITS K+MRD GIS+G GFV FSTPEEA++A+ +G M KPLYVALA
Sbjct: 310 LRDHFSACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVALA 369
Query: 382 QRKEDRR 388
QRKEDR+
Sbjct: 370 QRKEDRK 376
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 158/285 (55%), Gaps = 17/285 (5%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + +L+V +L ++ ++ L D+F + G ++S +V +S GYG+V F + +
Sbjct: 93 DARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKVVTS-EDGKSKGYGFVQFESEE 151
Query: 77 EAARALEMLNFTPLNGKPIRV--MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTF 132
+ A+E LN + K + V D L A N+++KNLD + L + F
Sbjct: 152 SSKVAIEKLNGYTVADKELYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEATLQEKF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S+FG I+S +A D NG SKG+GFV +DN + A+KA+E +NG L K +YV +K E
Sbjct: 212 SSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARAQKKAE 271
Query: 193 RDT------------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
R+ +I K K +N+YVKN+ + ++E+L+ F GTITSA +MRD G
Sbjct: 272 REQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGTITSAKIMRDDKG 331
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
SK FGFV F ++A +AV +G + K YV AQ+K +R+
Sbjct: 332 ISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVALAQRKEDRK 376
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/387 (51%), Positives = 276/387 (71%), Gaps = 13/387 (3%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ N F T SLYVGDL +V +S L+++F+ +G V S+RVCRD TRRSLGY YVNF
Sbjct: 31 ASDNPFQTPSLYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAVTRRSLGYSYVNFHQM 90
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RA++ +NF+ + GKP R+M+S RDPSLR+SG GNIF+KNL++AID+K L+DTFS F
Sbjct: 91 ADAERAMDTMNFSMIKGKPCRIMWSQRDPSLRRSGVGNIFVKNLNEAIDNKQLYDTFSLF 150
Query: 136 GNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
GNILSCKV TD G S GYG+V ++ E+A AIEKL+GML++ ++V VGHF+R+ +R
Sbjct: 151 GNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQEVQVGHFMRRNDRP 210
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +TN Y+KN+ + L + F ++G + SA V R+ ++ FGF+NF +
Sbjct: 211 ---DIDSWTNCYIKNVPYEWDDARLNQEFAQFGEVLSATVSREDTNQTLGFGFINFAEHE 267
Query: 255 DAARAVEALNGKKFD--------DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
A AVEALNGK++ ++ YVG+AQKKSERE EL+ +FE + KFQG
Sbjct: 268 SAVAAVEALNGKEYTTTLDGEEITQQIYVGRAQKKSERERELRAKFEAEKMDRISKFQGV 327
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFSTPEEASRALLE 365
NLY+KNLDDS+ D+ L+ F+ G+ITS +VM+D G SRG GFV +STPEE++RA+ E
Sbjct: 328 NLYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNE 387
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARLQ 392
MNGK++ +KP++VALAQR+E RRA+L+
Sbjct: 388 MNGKLIANKPIFVALAQRREVRRAQLE 414
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 159/292 (54%), Gaps = 22/292 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L + + QLYD F+ G ++S +V D S+GYGYV++ A+ A A
Sbjct: 125 GVGNIFVKNLNEAIDNKQLYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAA 184
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
+E L+ ++G+ ++V + R+ N +IKN+ D L+ F+ FG +LS
Sbjct: 185 IEKLDGMLIDGQEVQVGHFMRRNDRPDIDSWTNCYIKNVPYEWDDARLNQEFAQFGEVLS 244
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND--------KQVYVGHFLRKQE 192
V+ + Q+ G+GF+ F ESA A+E LNG +Q+YVG +K E
Sbjct: 245 ATVSREDTNQTLGFGFINFAEHESAVAAVEALNGKEYTTTLDGEEITQQIYVGRAQKKSE 304
Query: 193 RDTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-D 239
R+ E+ SKF N+YVKNL +S T++ L+ F GTITSA VM+D D
Sbjct: 305 RERELRAKFEAEKMDRISKFQGVNLYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKD 364
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
G+S+ FGFV + +++ RAV +NGK +K +V AQ++ R +L+ Q
Sbjct: 365 GRSRGFGFVCYSTPEESTRAVNEMNGKLIANKPIFVALAQRREVRRAQLEAQ 416
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 223/435 (51%), Positives = 284/435 (65%), Gaps = 51/435 (11%)
Query: 8 GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 67
GQN G + + SLYVGDL +V +S L++ F+ G V+S+RVCRD +TR SLGY
Sbjct: 21 GQNPTG-----SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGY 75
Query: 68 GYVNFSNAQE----------------AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGA 111
YVNF + A RA++ +NF L+GKP+R+M+S RDP++R+SGA
Sbjct: 76 AYVNFQQPADGKSFFQFMSFLTFLITAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGA 135
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCK-----------VATDLNGQSKGYGFVQFD 160
GNIFIKNLDK ID+K+++DTFS FGNILSCK VA D G SKGYGFV F+
Sbjct: 136 GNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVTFPIEHLKTVVAIDDEGSSKGYGFVHFE 195
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEED 218
EE+AQ AI+K+NGMLL K+V+VG F + +R+ E+ ++ KFTNVYVKN + +E
Sbjct: 196 TEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKKFTNVYVKNFGDHYNKET 255
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD--DKEWYVG 276
L+K F +YG ITS VM DGKSK FGFV F ++A AV+ALN D D + +V
Sbjct: 256 LEKLFAKYGAITSCDVMTS-DGKSKGFGFVAFAQPEEAEAAVQALNDSAVDGSDLKLHVC 314
Query: 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
+AQKKSER ELK + EQ+ E K+QG NLY+KNLD+S+DDE LK+ F FG+ITS K
Sbjct: 315 RAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAK 374
Query: 337 --------------VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
VM D +G S+G GFV F PEEA+ A+ EMN KMV SKPLYVALAQ
Sbjct: 375 VGLVPLEFFISLFQVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQ 434
Query: 383 RKEDRRARLQVCLLQ 397
RKEDRRA+L +Q
Sbjct: 435 RKEDRRAQLASQYMQ 449
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 159/319 (49%), Gaps = 45/319 (14%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSL----------GYGYVN 71
G ++++ +L+ + + +YD F+ G ++S +V + +++ GYG+V+
Sbjct: 134 GAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVTFPIEHLKTVVAIDDEGSSKGYGFVH 193
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDH 125
F + A A++ +N L GK + V + R R+ G N+++KN +
Sbjct: 194 FETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKKFTNVYVKNFGDHYNK 253
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN--DKQVY 183
+ L F+ +G I SC V T +G+SKG+GFV F E A+ A++ LN ++ D +++
Sbjct: 254 ETLEKLFAKYGAITSCDVMTS-DGKSKGFGFVAFAQPEEAEAAVQALNDSAVDGSDLKLH 312
Query: 184 VGHFLRKQERDTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
V +K ER E+ K + N+YVKNL ES +E L+K F +G ITS
Sbjct: 313 VCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITS 372
Query: 232 A--------------VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
A VM D +G+SK FGFV FE ++A AV +N K K YV
Sbjct: 373 AKVGLVPLEFFISLFQVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVAL 432
Query: 278 AQKKSERELELKHQFEQNM 296
AQ+K +R +L Q+ Q +
Sbjct: 433 AQRKEDRRAQLASQYMQRL 451
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 277/369 (75%), Gaps = 2/369 (0%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVNF + +RA+E L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N++ ++G+P R+M+S RDPSLR++G GNIFIKNL AID+KALHDTFSAFG ILSCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFT 203
D GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+ FT
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL+ ++ F +G +TS + D +GKS+ FGFVNFEN + A AV+ +
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K+ D ++ YVG+AQKK ER ELK +E E K+QG NL++KNLDDSID EKL+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLE 359
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+ F PFG+ITS +VM D +G S+G GFV FS+PEEA++A+ EMN +M+ KPLYVALAQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 384 KEDRRARLQ 392
K+ RR++L+
Sbjct: 420 KDVRRSQLE 428
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 164/290 (56%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + L+D F+ G+++S +V D +S +G+V++ A+ A A
Sbjct: 144 GDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-ELGQSKCFGFVHYETAEAAEAA 202
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V S RD + K+ N+++KNL +D+ + F F
Sbjct: 203 IENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPF 262
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G + S + TD G+S+G+GFV F+N ESA A++++N ++ +++YVG +K+ER
Sbjct: 263 GPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLD 322
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ + SK+ N++VKNL +S E L++ F +GTITSA VM D GKSK
Sbjct: 323 ELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSK 382
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F + ++A +A+ +N + K YV AQ+K R +L+ Q +
Sbjct: 383 GFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQIQ 432
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 187/320 (58%), Positives = 252/320 (78%), Gaps = 2/320 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 122
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 123 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 182
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVG+ + K++R ++ K+
Sbjct: 183 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 242
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TNVYVKN++ TEE+ ++ F +YG +TS+ + RD +GKS+ FGFVNF D AA+AV
Sbjct: 243 NYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAV 302
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNGK+F +E YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D IDD+
Sbjct: 303 EELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKANKYQGVNLYIKNLADDIDDD 362
Query: 321 KLKQLFSPFGSITSCKVMRD 340
KL+Q+FS FG ITS KVMRD
Sbjct: 363 KLRQMFSEFGPITSAKVMRD 382
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 162/283 (57%), Gaps = 15/283 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G++ S +V D + +S GY +V +++ +KA+
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 122
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 123 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 178
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S V +D +G SK +GFV++E + AA+A++ +NG ++K+ YVG K +R+
Sbjct: 179 LSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQ---- 234
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+FE+ K N+Y+KN++ + +E+ ++LFS +G +TS + RD G SRG G
Sbjct: 235 SKFEEM------KANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFG 288
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
FV FST + A++A+ E+NGK + LYV AQ+K +R L+
Sbjct: 289 FVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQKKHEREEELR 331
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 42/53 (79%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P++A++A+ EMN +MV KPLYVALAQRK+ R+++L+ +
Sbjct: 438 GKSKGFGFVCFSNPDDATKAVAEMNQRMVEGKPLYVALAQRKDVRKSQLEASI 490
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
GKSK FGFV F N DDA +AV +N + + K YV AQ+K R+ +L+
Sbjct: 438 GKSKGFGFVCFSNPDDATKAVAEMNQRMVEGKPLYVALAQRKDVRKSQLE 487
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ ++N ++ K +YV RK R +++ S
Sbjct: 438 GKSKGFGFVCFSNPDDATKAVAEMNQRMVEGKPLYVALAQRKDVRKSQLEAS 489
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/386 (52%), Positives = 279/386 (72%), Gaps = 25/386 (6%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GGA Q T SLYVG+L+ V+++ L+++FN +G V S+RVCRD TRRSLGY YVN+
Sbjct: 166 GGAAVPQ--TASLYVGELDHTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYL 223
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
NA + R RDP+LRK+G GNIFIKNLD+AID+KALHDTF+
Sbjct: 224 NAADGER---------------------RDPALRKTGQGNIFIKNLDEAIDNKALHDTFA 262
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFGN+LSCKVATD G+S+GYG+V ++ ESA+ AI+ +N MLLNDKQV+VGH + ++ER
Sbjct: 263 AFGNVLSCKVATDETGKSRGYGYVHYETAESAEAAIKAVNRMLLNDKQVFVGHHISRKER 322
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
++I+ +++FTN+YVKNL TE + + F E+G ITSAV+ D +GKS+ FGFVN+E
Sbjct: 323 QSQIDEARAQFTNIYVKNLDTDITEAEFRVMFEEFGNITSAVLQTDNEGKSRGFGFVNYE 382
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N ++A RAV ++ K+ K +VG+AQKKSER+ EL E +E +K+ G NLY+K
Sbjct: 383 NHEEAERAVNEMHEKEIKGKVLFVGRAQKKSERQSELARSHEAAKQERQNKYAGVNLYVK 442
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDD +DD+KL+ F FG+ITSCKVMR+ IS+G GFV FSTP+EA++A+ EMN KM+
Sbjct: 443 NLDDDVDDDKLRAEFEAFGTITSCKVMRNERDISKGFGFVCFSTPDEATKAVTEMNNKMI 502
Query: 372 VSKPLYVALAQRKEDRRARLQVCLLQ 397
+KPLYV+LAQR++ RR +L+ ++Q
Sbjct: 503 GTKPLYVSLAQRRDVRRQQLEGQIMQ 528
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N++ +LYV +L+ +V D +L F G + S +V R+ S G+G+V FS EA
Sbjct: 432 NKYAGVNLYVKNLDDDVDDDKLRAEFEAFGTITSCKVMRN-ERDISKGFGFVCFSTPDEA 490
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
+A+ +N + KP+ V + R R+ G I +N
Sbjct: 491 TKAVTEMNNKMIGTKPLYVSLAQRRDVRRQQLEGQIMQRN 530
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/341 (57%), Positives = 256/341 (75%), Gaps = 5/341 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ FG+YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDSGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK + K YVG+A KK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDDMNGKDMNGKAIYVGRA-KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 300
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS
Sbjct: 301 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFS 340
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 163/284 (57%), Gaps = 16/284 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK++F +G S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385
SG S+G GFV+F E+A +A+ +MNGK + K +YV A++ E
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAKKVE 270
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 101/191 (52%), Gaps = 18/191 (9%)
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAV 260
++YV +L + TE L + F G I S V RD +S + +VNF+ DA RA+
Sbjct: 10 MASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ +N K + S+R+ L+ K N++IKNLD SID++
Sbjct: 70 DTMNFDVIKGKPVRI----MWSQRDPSLR------------KSGVGNIFIKNLDKSIDNK 113
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGR 172
Query: 381 AQRKEDRRARL 391
+ +++R A L
Sbjct: 173 FKSRKEREAEL 183
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 277/369 (75%), Gaps = 2/369 (0%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVNF + +RA+E L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N++ ++G+P R+M+S RDPSLR++G GNIFIKNL AID+KALHDTFSAFG ILSCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFT 203
D GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+ FT
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL+ ++ F +G +TS + D +GKS+ FGFVNFEN + A AV+ +
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K+ D ++ YVG+AQKK ER ELK +E E K+QG NL++KNLDDSID EKL+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLLKYQGVNLFVKNLDDSIDSEKLE 359
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+ F PFG+ITS +VM D +G S+G GFV FS+PEEA++A+ EMN +M+ KPLYVALAQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 384 KEDRRARLQ 392
K+ RR++L+
Sbjct: 420 KDVRRSQLE 428
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 162/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + L+D F+ G+++S +V D +S +G+V++ A+ A A
Sbjct: 144 GDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-ELGQSKCFGFVHYETAEAAEAA 202
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V S RD + K+ N+++KNL +D+ + F F
Sbjct: 203 IENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPF 262
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G + S + TD G+S+G+GFV F+N ESA A++++N ++ +++YVG +K+ER
Sbjct: 263 GPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLD 322
Query: 196 EIN------------KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K + N++VKNL +S E L++ F +GTITSA VM D GKSK
Sbjct: 323 ELKRLYESTRLEKLLKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSK 382
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F + ++A +A+ +N + K YV AQ+K R +L+ Q +
Sbjct: 383 GFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQIQ 432
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/422 (48%), Positives = 280/422 (66%), Gaps = 49/422 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL ++T++ LYD F G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + GKPIR+M+S RDPSLR+SG GN+FIKNLD++ID+KAL+DTFS+FGNILSCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKV 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--K 201
D+NG SKG+GFV ++++ESAQ+AIEK+NGML+ DK+V+V F + +R E +
Sbjct: 122 VCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKH 180
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITS-AVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN++VKNL +S + L K+F ++G + S V+ + G SKC GF++F+ D A AV
Sbjct: 181 FTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAV 240
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E ++ K+ + K+ Y G+AQKK+ER ELK ++E+ +E ++QG NLY+KNLDDSIDDE
Sbjct: 241 EIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDE 300
Query: 321 KLKQLFSPFGSITSCKVMRD---------------------------------------- 340
L++ F FG+ITS KV+ D
Sbjct: 301 GLREAFKQFGNITSAKVITDLNEKDEVGQAKSDQAPEEEGEAVEEKKTEDSEAAGDAPGP 360
Query: 341 -----PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS+PEEA++A+ EMNG++ KPLYV LAQRKEDR+A LQ
Sbjct: 361 EKPVSKKGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQY 420
Query: 396 LQ 397
+Q
Sbjct: 421 MQ 422
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 172/340 (50%), Gaps = 68/340 (20%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D++ S G+G+V++ + + A RA
Sbjct: 88 GQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING--SKGFGFVHYESDESAQRA 145
Query: 82 LEMLNFTPLNGKPIRVM-YSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+E +N + K + V + R+ +R+ G N+F+KNL + D AL F F
Sbjct: 146 IEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQF 205
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G ++S KV D G SK +GF+ F + A+ A+E ++ + K++Y G +K ER
Sbjct: 206 GEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERS 265
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---- 237
+E+ K+K+ N+YVKNL +S +E L+++F ++G ITSA V+ D
Sbjct: 266 SEL-KAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNEK 324
Query: 238 ------------------------------GD-----------GKSKCFGFVNFENSDDA 256
GD G+SK FGFV F + ++A
Sbjct: 325 DEVGQAKSDQAPEEEGEAVEEKKTEDSEAAGDAPGPEKPVSKKGRSKGFGFVCFSSPEEA 384
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+AV +NG+ F K YVG AQ+K +R+ L+ Q+ Q +
Sbjct: 385 TKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQYMQRV 424
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/367 (53%), Positives = 261/367 (71%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
SLYVGDL NV+D+ L D F+ + SVRVC+D ST +SL YGYVNF + Q+A RA
Sbjct: 10 APASLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRA 69
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+E+ N + LNGK +RVM+S RDP RK+ GN+F+KNL ++ID+ L D F +GNILS
Sbjct: 70 IELKNNSTLNGKAMRVMWSRRDPDARKNAIGNLFVKNLPESIDNAGLQDMFKKYGNILSS 129
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KV +G+SKGYGFVQF++EES+ AIEKLNG + DKQ+YVG F++K +R ++
Sbjct: 130 KVVMSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGPDAR 189
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
+TN+Y+KNL +E LQ+ F +G I S V+ +D G SK FGFVN++N DDA RA+E
Sbjct: 190 YTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKRAME 249
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
A+NG K K YV +AQKK+ERE L HQFE+ KE K++G+N+Y+KN+DD + DE+
Sbjct: 250 AMNGSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVSDEE 309
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ FS G ITS K+MRD GIS+G GFV FSTPEEA++A+ +G M KPLYVALA
Sbjct: 310 LRDHFSACGIITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
Query: 382 QRKEDRR 388
QRKEDR+
Sbjct: 370 QRKEDRK 376
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/335 (59%), Positives = 259/335 (77%), Gaps = 5/335 (1%)
Query: 60 STRRSLGYGYVNFSNAQEAA-RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
S R SLG +NF N AA RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKN
Sbjct: 9 SRRPSLGGIILNFENFLLAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKN 68
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLN
Sbjct: 69 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 127
Query: 179 DKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
D++V+VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++G S VM
Sbjct: 128 DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 187
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ
Sbjct: 188 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 247
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+P
Sbjct: 248 QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSP 306
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
EEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 307 EEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 341
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 60 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 117
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 118 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 177
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 178 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 237
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 238 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 295
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 296 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 349
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 137/229 (59%), Gaps = 15/229 (6%)
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
+A++A++ +N ++ K V + +RD + KS N+++KNL +S + L +F
Sbjct: 27 AAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 82
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + E
Sbjct: 83 SAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 141
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D SG
Sbjct: 142 REAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 191
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 192 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 240
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/320 (58%), Positives = 249/320 (77%), Gaps = 2/320 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N + RAL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTFS FGNILSCK
Sbjct: 120 EDLNYTSIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+A +AI+ +NGMLLNDK+V+VGH + K++R +++ K+
Sbjct: 180 VAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQSKLEEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+KN+ ES ++E+ K F YG + SA + RD +GKS+ FGFVNF + + AA+AV
Sbjct: 240 NFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAV 299
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+F K+ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL D +DD+
Sbjct: 300 EELNDKEFHGKKLYVGRAQKKHEREEELRRQYEAARMEKASKYQGVNLYVKNLTDDVDDD 359
Query: 321 KLKQLFSPFGSITSCKVMRD 340
KL++LFS +G+ITS KVMRD
Sbjct: 360 KLRELFSSYGTITSAKVMRD 379
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 162/290 (55%), Gaps = 15/290 (5%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
PS + ++++ LD ++ L + FS+ G + S +V D + +S GY +V ++N
Sbjct: 53 PSTAAQHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 112
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN + + + +RD + K+ NV++KNL + + L +
Sbjct: 113 ADGERALEDLNYTSIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 168
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F ++G I S V +D G SK +GFV++E ++ A +A++++NG +DK+ +VG K
Sbjct: 169 FSQFGNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKR 228
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
+R+ +L+ K N+YIKN+D+S+ DE+ +LF P+G + S + RD +
Sbjct: 229 DRQSKLEEM----------KANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDEN 278
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G SRG GFV F++ E A++A+ E+N K K LYV AQ+K +R L+
Sbjct: 279 GKSRGFGFVNFASHESAAKAVEELNDKEFHGKKLYVGRAQKKHEREEELR 328
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 41/53 (77%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P+EAS+A+ EMN KMV KPLYVALAQRK+ RR +L+ +
Sbjct: 440 GKSKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQRKDVRRNQLEASI 492
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 63 RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102
+S G+G+V FSN EA++A+ +N +NGKP+ V + R
Sbjct: 441 KSKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQR 480
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/378 (55%), Positives = 279/378 (73%), Gaps = 8/378 (2%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVG+L +VT++ LY+ + + + V ++++ + Y + +
Sbjct: 3 AAASSYPMASLYVGNLHGDVTEAMLYEKLSPR-DLTHLWVIKNITN--CVLYPRLKCVSL 59
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 60 V-AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 118
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 119 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 177
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 178 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKH 237
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 238 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 297
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSIT +VM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 298 DDTIDDEKLRKEFSPFGSITRAEVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 356
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 357 KPLYVALAQRKEERKAHL 374
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 93 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 150
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 151 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 210
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 211 GKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 270
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+IT A VM + DG+S
Sbjct: 271 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITRAEVMLE-DGRS 328
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 329 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 382
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 140/228 (61%), Gaps = 15/228 (6%)
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A++A++ +N ++ K + + +RD + KS NV++KNL +S + L +F
Sbjct: 61 AERALDTMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 116
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+G I S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ER
Sbjct: 117 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 175
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
E EL + A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G
Sbjct: 176 EAELGAK--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGK 225
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S+G GFV++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 226 SKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 273
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/378 (53%), Positives = 269/378 (71%), Gaps = 5/378 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N + + SLYVGDL+ +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ + Q
Sbjct: 24 NQQLYNSASLYVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNYYSVQ 83
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A ALE LN+ + G P R+M+S++DP+LRKSGAGNIF+KNLD++ID KA +DTFS FG
Sbjct: 84 DAEAALESLNYIDIKGHPTRIMWSNKDPTLRKSGAGNIFVKNLDRSIDTKAFYDTFSHFG 143
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
ILSCKVA D NG SKGYGFV +D EESA++AIEK+NGM++ K+V V F++KQ+RD
Sbjct: 144 PILSCKVAMDENGVSKGYGFVHYDTEESAKEAIEKVNGMVIGGKKVEVSPFIKKQDRDPA 203
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+ FTN+YV+N S EE L++ +YG ITS ++ DG G+ F FVNF + A
Sbjct: 204 -SVDVFTNLYVRNFPVSWDEEALKQFLDKYGEITSMMIKEDGKGRK--FAFVNFAEPEMA 260
Query: 257 ARAVEALNGKKFDD--KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
AVEALNG K ++ + V Q K++R+ LK Q+ + + +NLYIKNLD
Sbjct: 261 KEAVEALNGTKLEEGSEPLLVCPHQDKAKRQAFLKSQYISGLDGSIASKASSNLYIKNLD 320
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
DS DE L++LF FGSITSCK+MRD SG+SRG GFV FS PEEA++A+ M+ K+V K
Sbjct: 321 DSFTDESLQELFGQFGSITSCKIMRDASGVSRGFGFVCFSRPEEATKAIAGMHLKIVKGK 380
Query: 375 PLYVALAQRKEDRRARLQ 392
PLYV LA++KE R +RLQ
Sbjct: 381 PLYVGLAEKKEQRLSRLQ 398
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 102/195 (52%), Gaps = 21/195 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LYV + + + L ++ G++ S+ + D R+ + +VNF+ + A A+E
Sbjct: 209 TNLYVRNFPVSWDEEALKQFLDKYGEITSMMIKEDGKGRK---FAFVNFAEPEMAKEAVE 265
Query: 84 MLNFTPLN-GKPIRVMYSHRDPSLRKS-----------------GAGNIFIKNLDKAIDH 125
LN T L G ++ H+D + R++ + N++IKNLD +
Sbjct: 266 ALNGTKLEEGSEPLLVCPHQDKAKRQAFLKSQYISGLDGSIASKASSNLYIKNLDDSFTD 325
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
++L + F FG+I SCK+ D +G S+G+GFV F E A KAI ++ ++ K +YVG
Sbjct: 326 ESLQELFGQFGSITSCKIMRDASGVSRGFGFVCFSRPEEATKAIAGMHLKIVKGKPLYVG 385
Query: 186 HFLRKQERDTEINKS 200
+K++R + + +S
Sbjct: 386 LAEKKEQRLSRLQQS 400
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 187/327 (57%), Positives = 250/327 (76%), Gaps = 2/327 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
NA+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 41 PNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 100
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 101 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 160
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R +
Sbjct: 161 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 220
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTNVY+KN+ + TEE+ ++ F ++G ITSA + RD +GKS+ FGFVNF
Sbjct: 221 KFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTH 280
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 281 ESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 340
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD 340
D +DDEKL++LF P+G+ITS KVMRD
Sbjct: 341 TDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 127/392 (32%), Positives = 204/392 (52%), Gaps = 62/392 (15%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L++ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 135 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNA 193
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + S +D + K+ N++IKN+D+ + + + F F
Sbjct: 194 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKF 253
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S ++ D G+S+G+GFV F ESAQ A++++N + +++YVG +K ER+
Sbjct: 254 GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREE 313
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K SK+ N+YVKNL++ +E L++ FG YGTITSA VMRD
Sbjct: 314 ELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD------ 367
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
N E + DKE +A K++E+E + E+ ++ AD
Sbjct: 368 ----TNIERTQTPE-----------SDKEKENKEATKENEKESSEAEKAEKTEEKPADS- 411
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
G D + L G S+G GFV FS+P+EAS+A+
Sbjct: 412 -GDEKKEDKESKKADKKGL--------------------GKSKGFGFVCFSSPDEASKAV 450
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
EMN +MV KPLYVALAQRK+ RR++L+ +
Sbjct: 451 TEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 482
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 163/302 (53%), Gaps = 21/302 (6%)
Query: 95 IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKG 153
+ + S P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 154 YGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSES 213
Y +V ++N ++A+E LN L+ K + +RD + K+ NV++KNL +
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW 273
+ L +F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 274 YVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG 330
+VG K +R+ E+K F N+YIKN+D + +E+ ++LF FG
Sbjct: 208 FVGHHISKKDRQSKFEEMKANF-------------TNVYIKNIDQDVTEEEFRELFEKFG 254
Query: 331 SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
ITS + RD G SRG GFV FST E A A+ EMN K + ++ LYV AQ+K +R
Sbjct: 255 EITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Query: 391 LQ 392
L+
Sbjct: 315 LR 316
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/361 (56%), Positives = 266/361 (73%), Gaps = 11/361 (3%)
Query: 47 MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSL 106
+G V S+RVCRD TRRSLGY YVNF N +A RAL+ +NFT + G P R+M+S RDPSL
Sbjct: 14 VGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPCRIMWSQRDPSL 73
Query: 107 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESA 165
RKSG GNIF+KNLD +ID+KAL+DTFS FGNILSCKVA + G SKGYG+V ++ E+A
Sbjct: 74 RKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAA 133
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGE 225
+AI K+NGML+ +V+VGHF ++Q+R + +TN YVKN+ T+ DL K F
Sbjct: 134 TEAIAKINGMLIAGTEVFVGHFQKRQDRP---DADDWTNCYVKNIPTQWTDADLLKEFEP 190
Query: 226 YGTITSAVVMRDG--DGKSKCFGFVNFENSDDAARAVEALNGKKFD-----DKEWYVGKA 278
+G + SAVVM+D ++ FGFVN+E SD A +AV+ALNGK + D E YVGKA
Sbjct: 191 FGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKA 250
Query: 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVM 338
QK+SERE EL+++FEQ E +K+QG NLY+KNLDD + D++L++ F+ G+ITS +VM
Sbjct: 251 QKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVM 310
Query: 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQC 398
RDP+G SRG GFV FSTPEEA++A+ EMNGK++ KP+YVALAQRKE RRA+L+ Q
Sbjct: 311 RDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQQ 370
Query: 399 R 399
R
Sbjct: 371 R 371
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 156/293 (53%), Gaps = 20/293 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD F+ G ++S +V + +T S GYGYV++ A+ A A
Sbjct: 77 GVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEA 136
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
+ +N + G + V + R N ++KN+ L F FG +LS
Sbjct: 137 IAKINGMLIAGTEVFVGHFQKRQDRPDADDWTNCYVKNIPTQWTDADLLKEFEPFGKVLS 196
Query: 141 CKVATDLNG--QSKGYGFVQFDNEESAQKAIEKLNGMLLN-----DKQVYVGHFLRKQER 193
V D ++G+GFV ++ ++A KA++ LNG D ++YVG ++ ER
Sbjct: 197 AVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSER 256
Query: 194 DTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+ E INK + N+YVKNL + ++++L+++F E GTITS+ VMRD +G
Sbjct: 257 ERELRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGN 316
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
S+ FGFV F ++A +AV +NGK K YV AQ+K R +L+ Q Q
Sbjct: 317 SRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQ 369
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 187/327 (57%), Positives = 250/327 (76%), Gaps = 2/327 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
NA+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 41 PNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 100
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 101 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 160
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R +
Sbjct: 161 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 220
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTNVY+KN+ + TEE+ ++ F ++G ITSA + RD +GKS+ FGFVNF
Sbjct: 221 KFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTH 280
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 281 ESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 340
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD 340
D +DDEKL++LF P+G+ITS KVMRD
Sbjct: 341 TDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 127/392 (32%), Positives = 204/392 (52%), Gaps = 62/392 (15%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L++ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 135 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNA 193
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + S +D + K+ N++IKN+D+ + + + F F
Sbjct: 194 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKF 253
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S ++ D G+S+G+GFV F ESAQ A++++N + +++YVG +K ER+
Sbjct: 254 GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREE 313
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K SK+ N+YVKNL++ +E L++ FG YGTITSA VMRD
Sbjct: 314 ELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD------ 367
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
N E + DKE +A K++E+E + E+ ++ AD
Sbjct: 368 ----TNIERTQTPE-----------SDKEKENKEATKENEKESSEAEKAEKTEEKPADS- 411
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
G D + L G S+G GFV FS+P+EAS+A+
Sbjct: 412 -GDEKKEDKESKKADKKGL--------------------GKSKGFGFVCFSSPDEASKAV 450
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
EMN +MV KPLYVALAQRK+ RR++L+ +
Sbjct: 451 TEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 482
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 163/302 (53%), Gaps = 21/302 (6%)
Query: 95 IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKG 153
+ + S P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 154 YGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSES 213
Y +V ++N ++A+E LN L+ K + +RD + K+ NV++KNL +
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW 273
+ L +F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 274 YVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG 330
+VG K +R+ E+K F N+YIKN+D + +E+ ++LF FG
Sbjct: 208 FVGHHISKKDRQSKFEEMKANF-------------TNVYIKNIDQDVTEEEFRELFEKFG 254
Query: 331 SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
ITS + RD G SRG GFV FST E A A+ EMN K + ++ LYV AQ+K +R
Sbjct: 255 EITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Query: 391 LQ 392
L+
Sbjct: 315 LR 316
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/345 (57%), Positives = 261/345 (75%), Gaps = 12/345 (3%)
Query: 49 QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK 108
+ V V RDL+ + S+ Q+A RAL+ +NF + GKP+R+M+S RDPSLRK
Sbjct: 80 KTVQVPALRDLT--------FYYSSSRQDAERALDTMNFDVIKGKPVRIMWSQRDPSLRK 131
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
SG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++A
Sbjct: 132 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERA 190
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEY 226
IEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++
Sbjct: 191 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 250
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G S VM D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+
Sbjct: 251 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 310
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+
Sbjct: 311 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSK 369
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 370 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 414
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 133 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 190
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 191 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 250
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 251 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 310
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 311 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 368
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 369 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 422
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 139/237 (58%), Gaps = 15/237 (6%)
Query: 156 FVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTT 215
F + + A++A++ +N ++ K V + +RD + KS N+++KNL +S
Sbjct: 92 FYYSSSRQDAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSID 147
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+ L +F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +V
Sbjct: 148 NKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 206
Query: 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
G+ + + ERE EL + A +F N+YIKN + +DDE+LK LF FG S
Sbjct: 207 GRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSV 256
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 257 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 313
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/325 (57%), Positives = 247/325 (76%), Gaps = 2/325 (0%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
ANQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 46 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGN
Sbjct: 106 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 165
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 198 N--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+ FTNVY+KNL +++ +K F ++G ITSA + RD +GKS+ FGFVNF +
Sbjct: 226 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 285
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL D
Sbjct: 286 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LF P+G+ITS KVMRD
Sbjct: 346 DIDDEKLRELFGPYGTITSAKVMRD 370
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 134/392 (34%), Positives = 210/392 (53%), Gaps = 64/392 (16%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L++ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 138 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNA 196
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + S +D + K+ N++IKNLD ID F F
Sbjct: 197 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKF 256
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S ++ D G+S+G+GFV F ESAQ A+E++N + +++YVG +K ER+
Sbjct: 257 GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREE 316
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K SK+ N+YVKNL++ +E L++ FG YGTITSA VMRD +
Sbjct: 317 ELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDTN---- 372
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
V E+S ++A GK +K++ +E N KEA +
Sbjct: 373 ----VERESSPESA------------------GK-EKEANKE---------NDKEATPEA 400
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
+ A + +EK K+ + K + P G S+G GFV FS+P+EAS+A+
Sbjct: 401 EKAEEKAEEKPAESSEEKDKE---------AKKSDKKPFGKSKGFGFVCFSSPDEASKAV 451
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
EMN +MV KPLYVALAQRK+ RR++L+ +
Sbjct: 452 TEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 483
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 158/286 (55%), Gaps = 21/286 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N ++A+
Sbjct: 51 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 110
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E LN L+ K + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 111 EDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNI 166
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K +R+
Sbjct: 167 LSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE 226
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+YIKNLD IDD++ +++F FG ITS + RD G SR
Sbjct: 227 EMKANF-------------TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSR 273
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G GFV FST E A A+ EMN K + S+ LYV AQ+K +R L+
Sbjct: 274 GFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELR 319
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFST 355
AA++ A+LY+ LD S+ + L +LFS G + S +V RD ++R G +V ++
Sbjct: 45 AANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRD--AVTRRSLGYAYVNYNN 102
Query: 356 PEEASRALLEMNGKMVVSKPLYVALAQR 383
+ RAL ++N ++ KP + +QR
Sbjct: 103 TADGERALEDLNYTLIKGKPCRIMWSQR 130
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/325 (57%), Positives = 247/325 (76%), Gaps = 2/325 (0%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
ANQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 48 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 107
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGN
Sbjct: 108 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 167
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 168 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 227
Query: 198 N--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+ FTNVY+KNL +++ +K F ++G ITSA + RD +GKS+ FGFVNF +
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL D
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LF P+G+ITS KVMRD
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRD 372
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 161/293 (54%), Gaps = 21/293 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+YIKNLD IDD++ +++F FG ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSR 268
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
D G SRG GFV FST E A A+ EMN K + S+ LYV AQ+K +R L+
Sbjct: 269 DQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELR 321
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
+ P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ RR++L+ +
Sbjct: 428 KKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 484
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/363 (53%), Positives = 261/363 (71%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +++DSQL+D F+ + SVR+CRD S+ +SL YGYVNF + +A RA+E+
Sbjct: 11 SLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEV 70
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N + LNGK IRVM+S RDP RKS GN+F+KNL ++ID+ L D F FGNILS KV
Sbjct: 71 KNHSTLNGKAIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVV 130
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+G+SKGYGFVQF+ EESA AIE+LNG L+ DKQ+YVG F++K +R + +++TN
Sbjct: 131 MSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDRISSGPDTRYTN 190
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL +E L++ F +G I S V +D +G SK FGFVNF+N +DA RA+E +N
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMN 250
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G + K YV +AQKK+ERE L QFE+ KE K++G+N+Y+KN+DD++ DE L+
Sbjct: 251 GLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRD 310
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS G+ITS K+MRD GIS+G GFV FSTPEEA++A+ +G M KPLYV+LAQRK
Sbjct: 311 HFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRK 370
Query: 385 EDR 387
EDR
Sbjct: 371 EDR 373
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ +++YV +++ NV+D L D F+ G + S ++ RD S G+G+V FS +EA
Sbjct: 288 KYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEAN 346
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
+A+ + +GKP+ V + R
Sbjct: 347 KAVNSFHGFMFHGKPLYVSLAQR 369
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/342 (55%), Positives = 257/342 (75%), Gaps = 7/342 (2%)
Query: 6 AQGQNVNGGG-----ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
AQG N + G A + + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD
Sbjct: 41 AQGDNADTAGPTPSSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAV 100
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
TRRSLGY YVN++ + +ALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD
Sbjct: 101 TRRSLGYAYVNYNTTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLD 160
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
AID+KALHDTF+AFGNILSCKVA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K
Sbjct: 161 VAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEK 220
Query: 181 QVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
+VYVGH + K++R ++ K+ FTN+Y+KN+S T+++ + F +G +TS+ + RD
Sbjct: 221 KVYVGHHIPKKDRQSKFEEMKANFTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQ 280
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+GKS+ FGFVNF + AA+AV+ LNGK F ++ YVG+AQKK ERE EL+ +E E
Sbjct: 281 EGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARME 340
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
A+K+QG NLYIKNLDD +DDEKL+QLF+ FG ITS KVMRD
Sbjct: 341 KANKYQGVNLYIKNLDDDVDDEKLRQLFADFGPITSAKVMRD 382
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 159/286 (55%), Gaps = 21/286 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G++ S +V D + +S GY +V ++ +KA+
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 122
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 123 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 178
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D +G SK +GFV++E + A++A++ +NG ++K+ YVG K +R+
Sbjct: 179 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 238
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+YIKN+ + D++ + LF+PFG +TS + RD G SR
Sbjct: 239 EMKANF-------------TNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSR 285
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G GFV F+T E A++A+ ++NGK + LYV AQ+K +R L+
Sbjct: 286 GFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELR 331
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 42/53 (79%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P++A++A+ EMN +MV KPLYVALAQRK+ R+++L+ +
Sbjct: 437 GKSKGFGFVCFSNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRKSQLEASI 489
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 52/143 (36%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--------------- 62
AN++ +LY+ +L+ +V D +L LF G + S +V RD +T
Sbjct: 342 ANKYQGVNLYIKNLDDDVDDEKLRQLFADFGPITSAKVMRDNATDSGNEDEGSSEEKETE 401
Query: 63 ------------------------------------RSLGYGYVNFSNAQEAARALEMLN 86
+S G+G+V FSN +A +A+ +N
Sbjct: 402 AKKDEEEEEKPEEAKTDDKEDADKKSDKKSDKKLHGKSKGFGFVCFSNPDDATKAVAEMN 461
Query: 87 FTPLNGKPIRVMYSHRDPSLRKS 109
+NGKP+ V + R +RKS
Sbjct: 462 QRMVNGKPLYVALAQRK-DVRKS 483
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/325 (57%), Positives = 247/325 (76%), Gaps = 2/325 (0%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
ANQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 48 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 107
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGN
Sbjct: 108 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 167
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 168 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 227
Query: 198 N--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+ FTNVY+KNL +++ +K F ++G ITSA + RD +GKS+ FGFVNF +
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL D
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LF P+G+ITS KVMRD
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRD 372
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 161/293 (54%), Gaps = 21/293 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+YIKNLD IDD++ +++F FG ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSR 268
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
D G SRG GFV FST E A A+ EMN K + S+ LYV AQ+K +R L+
Sbjct: 269 DQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELR 321
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
+ P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ RR++L+ +
Sbjct: 428 KKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 484
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/371 (52%), Positives = 261/371 (70%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
S+YVGDL +V + L+ F + G + SVRVCRD T SL YGYVNF + Q+A RA+
Sbjct: 11 PASIYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNFRSQQDAIRAI 70
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
++ N + LNGK IRVM+ HRDP+ RKSG GN+F+KNL +ID+ LHD F +GNILS K
Sbjct: 71 KLRNNSYLNGKVIRVMWLHRDPNARKSGRGNVFVKNLAGSIDNAGLHDLFKKYGNILSSK 130
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
V +G+SKGYGFVQF+ EESA AIEKLNG + +KQ+YVG F+RK +R +K+
Sbjct: 131 VVMSEDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVGKFVRKGDRILPGYDAKY 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+Y+KNL TE LQ+ F +G I S + +D +G SK F FVN+EN DDA +A+EA
Sbjct: 191 TNLYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAKKAMEA 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NG +F K YV +AQKK+ERE L QFE+ KE K+Q +NLY+KN+DD + D++L
Sbjct: 251 MNGLQFGSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKEL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+ LFS G+ITS KVMRD GIS+G GFV FS PEEA++A++ NG KPLY+A+AQ
Sbjct: 311 RDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVMSFNGCTFHRKPLYIAIAQ 370
Query: 383 RKEDRRARLQV 393
RK++R+ +L +
Sbjct: 371 RKKERKTQLNL 381
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ ++LYV +++ +VTD +L DLF+ G + SV+V RD S G+G+V FSN +EA
Sbjct: 290 KYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRD-DKGISKGFGFVCFSNPEEAN 348
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
+A+ N + KP+ + + R
Sbjct: 349 KAVMSFNGCTFHRKPLYIAIAQR 371
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/338 (57%), Positives = 255/338 (75%), Gaps = 14/338 (4%)
Query: 56 CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIF 115
CRD R L + A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIF
Sbjct: 220 CRDEPQRPQLPH----------AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIF 269
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
IKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGM
Sbjct: 270 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGM 328
Query: 176 LLNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
LLND++V+VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++G S
Sbjct: 329 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 388
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
VM D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FE
Sbjct: 389 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFE 448
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
Q ++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV F
Sbjct: 449 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCF 507
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
S+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 508 SSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 545
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 264 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 321
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 322 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 381
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 382 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 441
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 442 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 499
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 500 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 553
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 136/228 (59%), Gaps = 15/228 (6%)
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L +F
Sbjct: 232 AERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 287
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ER
Sbjct: 288 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 346
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
E EL + A +F N+YIKN + +DDE+LK LF FG S KVM D SG
Sbjct: 347 EAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 396
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 397 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 444
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/397 (51%), Positives = 278/397 (70%), Gaps = 17/397 (4%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + F + SLYVGDL + ++ L+++FN +G V S+RVCRD TRRSLGY YVNF N
Sbjct: 3 GGSTVPFHSASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHN 62
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+A RAL+ +N+T + KP R+M+S RDP+LRKSG GN+F+KNLD +IDHKAL DTFS
Sbjct: 63 VSDAERALDTMNYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDASIDHKALFDTFSL 122
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FGNILSCKVATD G+S+GYG+V +++E++A AI K+N M + DK+VYVGHF+R+ ER
Sbjct: 123 FGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTERS 182
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+S +TN+YVKN EE L+K+F +G ITS DG + FG+VNFE D
Sbjct: 183 ---GQSDWTNLYVKNFPADWDEETLRKAFETFGAITSCKAAAAADGSA--FGWVNFEAHD 237
Query: 255 DAARAVEALNG-----------KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
A A++ALNG +VG+AQKK ERE ELK +F+ E K+
Sbjct: 238 AAVAAMDALNGIAELPGQAGGAPTTLKAPLFVGRAQKKIERERELKAKFDAAKIERIKKY 297
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
QG NL++KNLDD +DD++L++ F+ +G+ITS +VMR+P +G SRG GFV FS+PEEA++A
Sbjct: 298 QGVNLFVKNLDDGLDDDQLRENFAEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKA 357
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
+ EMN K+V+ KP++VALAQRKE RRA+L+ Q R
Sbjct: 358 VTEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQRR 394
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 158/304 (51%), Gaps = 30/304 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+A++ L+D F+ G ++S +V D RS GYGYV++ + A A
Sbjct: 98 GVGNVFVKNLDASIDHKALFDTFSLFGNILSCKVATD-EAGRSQGYGYVHYESEDAATDA 156
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
+ +N + K + V + R +S N+++KN D + L F FG I S
Sbjct: 157 INKINSMTICDKEVYVGHFVRRTERSGQSDWTNLYVKNFPADWDEETLRKAFETFGAITS 216
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ-----------VYVGHFLR 189
CK A +G + +G+V F+ ++A A++ LNG+ Q ++VG +
Sbjct: 217 CKAAAAADGSA--FGWVNFEAHDAAVAAMDALNGIAELPGQAGGAPTTLKAPLFVGRAQK 274
Query: 190 KQERDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
K ER+ E+ K+KF N++VKNL + ++ L+++F EYGTITSA VMR
Sbjct: 275 KIEREREL-KAKFDAAKIERIKKYQGVNLFVKNLDDGLDDDQLRENFAEYGTITSARVMR 333
Query: 237 D-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
+ G S+ FGFV F + ++AA+AV +N K K +V AQ+K R +L+ Q Q
Sbjct: 334 EPATGTSRGFGFVCFSSPEEAAKAVTEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQR 393
Query: 296 MKEA 299
A
Sbjct: 394 RTTA 397
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/375 (53%), Positives = 271/375 (72%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
SLYVGDL ++TD L+D F++ + SVR+CRD S+ RSL YGYVNF + Q+A+ A+
Sbjct: 11 PASLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAI 70
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E N T L+GK IRVM+SHRDP R+SG GN+F+KNL +ID+ L F FGNILSCK
Sbjct: 71 EAKNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKNLSDSIDNVRLQAMFQKFGNILSCK 130
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
V +G+SKGYGFVQF++EE A AIEKLNG +++ KQ+Y G F+RK +R +K+
Sbjct: 131 VVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFVRKTDRVLPNPDAKY 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+Y+KNL TEE L++ F E+G I S V+ +D +G S+ FGFVNFE+ +DA RA+EA
Sbjct: 191 TNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEA 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LNG + K YV +AQKK+ERE L+ QFE+ E K++G+N+Y+KN+DD+++D+ L
Sbjct: 251 LNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNVNDDDL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS G ITS K+MRD GIS+G GFV FSTP+EAS+A+ +G M KPLYVA+AQ
Sbjct: 311 REHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAIAQ 370
Query: 383 RKEDRRARLQVCLLQ 397
RKEDR+A+LQ+ Q
Sbjct: 371 RKEDRQAQLQLHYAQ 385
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 174/305 (57%), Gaps = 33/305 (10%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFS 73
+A + G +++V +L ++ + +L +F + G ++S C+ + T +S GYG+V F
Sbjct: 92 PDARRSGIGNVFVKNLSDSIDNVRLQAMFQKFGNILS---CKVVVTEDGKSKGYGFVQFE 148
Query: 74 NAQEAARALEMLNFTPLNGKPI----------RVMYSHRDPSLRKSGAGNIFIKNLDKAI 123
+ + A A+E LN ++GK I RV+ +P + + N++IKNLD +
Sbjct: 149 SEEYANAAIEKLNGFIIDGKQIYAGKFVRKTDRVL---PNPDAKYT---NLYIKNLDPDV 202
Query: 124 DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
+AL + F FG I S ++ D NG S+G+GFV F++ E A++A+E LNG+ L K +Y
Sbjct: 203 TEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLY 262
Query: 184 VG---------HFLRKQ---ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
V LR+Q +R+ +I K + +NVYVKN+ ++ ++DL++ F G ITS
Sbjct: 263 VARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNVNDDDLREHFSVCGKITS 322
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
A +MRD G SK FGFV F D+A++AV +G F K YV AQ+K +R+ +L+
Sbjct: 323 AKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAIAQRKEDRQAQLQLH 382
Query: 292 FEQNM 296
+ Q M
Sbjct: 383 YAQRM 387
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/395 (51%), Positives = 273/395 (69%), Gaps = 30/395 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ +VT++ LY++FN +G V S+RVCRD TRRSLGY YVNF N +A RAL+
Sbjct: 35 SLYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERALDT 94
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN++P+ GK R+M+SHRDP+LRK+G N+F+KNLDK ID+KAL+DTFS FGNILSCKVA
Sbjct: 95 LNYSPIRGKQCRIMWSHRDPTLRKAGNANVFVKNLDKTIDNKALYDTFSLFGNILSCKVA 154
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
TD +G+S+GYGFV F+N+ESA KAI KLNGM++ +K VYVG F + ER + KF
Sbjct: 155 TDDDGKSRGYGFVHFENDESAHKAITKLNGMMIGEKAVYVGPFQKHAERAEQHGDEPRKF 214
Query: 203 TNVYVKNLSES-TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
TNVY+K+L ES TTEED+QK+F E+G ITS + D G+ F FVN+E+ D AA+AVE
Sbjct: 215 TNVYIKHLPESWTTEEDVQKAFEEFGKITSVAIQTDRKGRR--FAFVNYEDFDSAAKAVE 272
Query: 262 ALNGKKFDDKE-----------------------WYVGKAQKKSERELELKHQFEQNMKE 298
A+NGK +E YV +AQ K+ER EL+++F+ E
Sbjct: 273 AMNGKDMRTQEEIDAGKGEEESTEEGSDEMPEYKLYVTRAQTKTERSAELRNKFQAKNTE 332
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357
Q NLY+KNL + +DDEKL+Q+F FG ITS KVM D +G+SRG GFV F+
Sbjct: 333 KVGN-QSCNLYVKNLPEDVDDEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQA 391
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+ +A+ M+ K+ KPL+VA+A++++ R RLQ
Sbjct: 392 DGEKAIQAMHLKLYGGKPLFVAVAEKRDARIERLQ 426
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 154/317 (48%), Gaps = 53/317 (16%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ + + LYD F+ G ++S +V D +S GYG+V+F N + A +A
Sbjct: 120 GNANVFVKNLDKTIDNKALYDTFSLFGNILSCKVATD-DDGKSRGYGFVHFENDESAHKA 178
Query: 82 LEMLNFTPLNGKPIRV---------MYSHRDPSLRKSGAGNIFIKNLDKA-IDHKALHDT 131
+ LN + K + V H D + + N++IK+L ++ + +
Sbjct: 179 ITKLNGMMIGEKAVYVGPFQKHAERAEQHGDEPRKFT---NVYIKHLPESWTTEEDVQKA 235
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG----------------- 174
F FG I S + TD G+ + FV +++ +SA KA+E +NG
Sbjct: 236 FEEFGKITSVAIQTDRKGRR--FAFVNYEDFDSAAKAVEAMNGKDMRTQEEIDAGKGEEE 293
Query: 175 ------MLLNDKQVYVGHFLRKQERDTEINKSKF------------TNVYVKNLSESTTE 216
+ + ++YV K ER E+ ++KF N+YVKNL E +
Sbjct: 294 STEEGSDEMPEYKLYVTRAQTKTERSAEL-RNKFQAKNTEKVGNQSCNLYVKNLPEDVDD 352
Query: 217 EDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
E L++ F ++G ITS VM D + G S+ FGFV F N D +A++A++ K + K +V
Sbjct: 353 EKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQADGEKAIQAMHLKLYGGKPLFV 412
Query: 276 GKAQKKSERELELKHQF 292
A+K+ R L+ ++
Sbjct: 413 AVAEKRDARIERLQQRY 429
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 96/187 (51%), Gaps = 17/187 (9%)
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAV 260
F ++YV +L TE L + F G + S V RD +S + +VNF N DA RA+
Sbjct: 33 FASLYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERAL 92
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + S R+ L+ K AN+++KNLD +ID++
Sbjct: 93 DTLNYSPIRGKQCRI----MWSHRDPTLR------------KAGNANVFVKNLDKTIDNK 136
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L FS FG+I SCKV D G SRG GFV F E A +A+ ++NG M+ K +YV
Sbjct: 137 ALYDTFSLFGNILSCKVATDDDGKSRGYGFVHFENDESAHKAITKLNGMMIGEKAVYVGP 196
Query: 381 AQRKEDR 387
Q+ +R
Sbjct: 197 FQKHAER 203
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/316 (60%), Positives = 250/316 (79%), Gaps = 4/316 (1%)
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 299 LYVALAQRKEERQAHL 314
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 33 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 90
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F F
Sbjct: 91 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 150
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 151 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 210
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 211 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 268
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 269 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 322
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 137/228 (60%), Gaps = 15/228 (6%)
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L +F
Sbjct: 1 AERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 56
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ER
Sbjct: 57 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 115
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
E EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D SG
Sbjct: 116 EAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK 165
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 166 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 213
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/316 (60%), Positives = 249/316 (78%), Gaps = 4/316 (1%)
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 299 LYVALAQRKEERQAHL 314
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 33 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 90
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 91 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 150
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 151 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 210
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 211 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 268
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 269 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 322
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 136/228 (59%), Gaps = 15/228 (6%)
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L +F
Sbjct: 1 AERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 56
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ER
Sbjct: 57 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 115
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
E EL + A +F N+YIKN + +DDE+LK LF FG S KVM D SG
Sbjct: 116 EAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 165
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 166 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 213
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/385 (52%), Positives = 266/385 (69%), Gaps = 31/385 (8%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A F SLYVGDL +VT++ L++ F+ G V+S+RVCRD TRRSLGY YVN+
Sbjct: 4 AIAQNFAMASLYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAVTRRSLGYAYVNYQQT 63
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF P+ G+PIR+M+S RDPSLR+SG GN+FIKNLDK IDHKA++DTFS F
Sbjct: 64 PDAERALDTMNFDPVFGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKDIDHKAIYDTFSNF 123
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVATD NG SKGYG YVG F+ + +R
Sbjct: 124 GNILSCKVATDENGVSKGYG---------------------------YVGKFIPRAQRMR 156
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
EI ++ KFTNVYVKN E+ T++ L F ++G I S VVM++ D KSK FGFV+FEN
Sbjct: 157 EIGETTRKFTNVYVKNFDENFTDQCLVDLFSKFGKIQSCVVMKE-DDKSKGFGFVSFENP 215
Query: 254 DDAARAVEALNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+DA AV+ +N + K+ YVG+AQKK+ER+ ELK ++E E +++G NLY+KN
Sbjct: 216 EDAEAAVKEMNEYQLPSGKKLYVGRAQKKAERQAELKRRYEMLKLERIQQYEGVNLYLKN 275
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
LDDS+DD +L++ F FG ITS KVM D G S+G GFV FS+P+EA+RA+ EMN + +
Sbjct: 276 LDDSVDDAQLRKAFEKFGVITSAKVMTDEKGQSKGFGFVCFSSPDEATRAVSEMNNQKLG 335
Query: 373 SKPLYVALAQRKEDRRARLQVCLLQ 397
+KPLYVALAQRKEDR+A+L L+Q
Sbjct: 336 NKPLYVALAQRKEDRKAQLASQLVQ 360
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 156/300 (52%), Gaps = 38/300 (12%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ +YD F+ G ++S +V D S GYGYV
Sbjct: 98 GVGNVFIKNLDKDIDHKAIYDTFSNFGNILSCKVATD-ENGVSKGYGYV----------- 145
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
GK I R+ N+++KN D+ + L D FS FG I SC
Sbjct: 146 ----------GKFIPRAQRMREIGETTRKFTNVYVKNFDENFTDQCLVDLFSKFGKIQSC 195
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG-MLLNDKQVYVGHFLRKQERDTE---- 196
V + + +SKG+GFV F+N E A+ A++++N L + K++YVG +K ER E
Sbjct: 196 VVMKE-DDKSKGFGFVSFENPEDAEAAVKEMNEYQLPSGKKLYVGRAQKKAERQAELKRR 254
Query: 197 --------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
I + + N+Y+KNL +S + L+K+F ++G ITSA VM D G+SK FGFV
Sbjct: 255 YEMLKLERIQQYEGVNLYLKNLDDSVDDAQLRKAFEKFGVITSAKVMTDEKGQSKGFGFV 314
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F + D+A RAV +N +K +K YV AQ+K +R+ +L Q Q + A +FQ +
Sbjct: 315 CFSSPDEATRAVSEMNNQKLGNKPLYVALAQRKEDRKAQLASQLVQRVN--ALRFQTVGM 372
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/316 (60%), Positives = 249/316 (78%), Gaps = 4/316 (1%)
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 6 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 65
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 66 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 124
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +D
Sbjct: 125 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 184
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD
Sbjct: 185 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 244
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP
Sbjct: 245 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 303
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 304 LYVALAQRKEERQAHL 319
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 38 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 95
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 96 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 155
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 156 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 215
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 216 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 273
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 274 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 327
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 137/229 (59%), Gaps = 15/229 (6%)
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
+A++A++ +N ++ K V + +RD + KS N+++KNL +S + L +F
Sbjct: 5 AAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 60
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + E
Sbjct: 61 SAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 119
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D SG
Sbjct: 120 REAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 169
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 170 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 218
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/324 (58%), Positives = 250/324 (77%), Gaps = 3/324 (0%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 50 QPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGE 109
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNIL
Sbjct: 110 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN- 198
SCKVA D G SKGYGFV ++ E+AQ AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEE 229
Query: 199 -KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDA 256
K+ FTNVYVKN+ + TT+E+ ++ F ++G ITSA + RD + GKS+ FGFVNF + + A
Sbjct: 230 MKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESA 289
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
A AV+ LN K F ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D
Sbjct: 290 AAAVDNLNEKDFKSQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDD 349
Query: 317 IDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL+ LFS +G+ITS KVMRD
Sbjct: 350 IDDEKLRDLFSGYGTITSAKVMRD 373
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 202/393 (51%), Gaps = 70/393 (17%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 140 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNA 198
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ N+++KN+D+ + + F F
Sbjct: 199 IKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTDEEFRELFEKF 258
Query: 136 GNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I S +A D +G+S+G+GFV F + ESA A++ LN +++YVG +K ER+
Sbjct: 259 GEITSATLARDSESGKSRGFGFVNFTSHESAAAAVDNLNEKDFKSQKLYVGRAQKKHERE 318
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L+ F YGTITSA VMRD
Sbjct: 319 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRDLFSGYGTITSAKVMRDN---- 374
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
+ E+S D+ +K+++ E + E++ EAA+K
Sbjct: 375 -----LAAESSSDS----------------------EKEAKSEGKENEPPEESKDEAAEK 407
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
+ + + D+KL G S+G GFV FS+P+EAS+A
Sbjct: 408 AETKDTKEAKTESKKADKKL-------------------LGKSKGFGFVCFSSPDEASKA 448
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
+ EMN +MV KPLYVALAQRK+ RR++L+ +
Sbjct: 449 VTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 481
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 155/287 (54%), Gaps = 22/287 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS+ G + S +V D + +S GY +V ++N ++A+
Sbjct: 53 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 112
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 113 EDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 168
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K +R+
Sbjct: 169 LSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFE 228
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
E+K F N+Y+KN+D DE+ ++LF FG ITS + RD SG S
Sbjct: 229 EMKANF-------------TNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKS 275
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
RG GFV F++ E A+ A+ +N K S+ LYV AQ+K +R L+
Sbjct: 276 RGFGFVNFTSHESAAAAVDNLNEKDFKSQKLYVGRAQKKHEREEELR 322
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/398 (50%), Positives = 277/398 (69%), Gaps = 24/398 (6%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ + SLYVGDL +V ++ L+++F+Q+G V S+RVCRD TRRSLGY YVNF N +A R
Sbjct: 39 YHSASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAER 98
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NFT + + R+M+S RDPSLR+SG GNIF+KNLD+ +D+KAL+DTFS FGNILS
Sbjct: 99 ALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILS 158
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SKGYG+V ++ SA AI K+NGML+ KQV+VGHF+R RD ++
Sbjct: 159 CKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVHVGHFVR---RDNRAGQA 215
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSA---VVMRDGDG------------KSKCF 245
+TN+YVK L S + L++ F ++G +TS V ++G G KS+ F
Sbjct: 216 DWTNLYVKGLPSSWDDAKLREEFEKHGAVTSCKVQVAPQEGQGDESKEKGKGGEGKSRGF 275
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKE----WYVGKAQKKSERELELKHQFEQNMKEAAD 301
GFVNFE + A +A+EALN + D E Y +AQKKSER EL+ + +Q E +
Sbjct: 276 GFVNFEEHESAVKAIEALNNAEMPDGEGTTTLYCARAQKKSERARELQSKHDQVKMERMN 335
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS--GISRGSGFVAFSTPEEA 359
KFQG N+Y+KNLD+ + ++ +++ F+P+G+ITS +VM D S S+G GFV FS PEEA
Sbjct: 336 KFQGVNVYVKNLDEGVTEDAMREAFAPYGTITSARVMVDNSNNNQSKGFGFVCFSAPEEA 395
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
++A+ EMNGKM+++KP+YVALAQR+E RR +L+ Q
Sbjct: 396 TKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQ 433
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357
A + A+LY+ +L + + L ++FS G + S +V RD + S G +V F
Sbjct: 35 AIAPYHSASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVA 94
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+A RAL MN + + + +QR R
Sbjct: 95 DAERALDTMNFTTIKDQACRIMWSQRDPSLR 125
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/314 (60%), Positives = 249/314 (79%), Gaps = 4/314 (1%)
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNIL
Sbjct: 87 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 146
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-- 197
SCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 147 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 205
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +DA
Sbjct: 206 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 265
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD I
Sbjct: 266 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 325
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLY
Sbjct: 326 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 384
Query: 378 VALAQRKEDRRARL 391
VALAQRKE+R+A L
Sbjct: 385 VALAQRKEERQAHL 398
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 117 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 174
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F F
Sbjct: 175 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 234
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 235 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 294
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 295 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 352
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 353 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 406
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 136/227 (59%), Gaps = 15/227 (6%)
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGE 225
++A++ +N ++ K V + +RD + KS N+++KNL +S + L +F
Sbjct: 86 KRALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 141
Query: 226 YGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
+G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ERE
Sbjct: 142 FGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 200
Query: 286 LELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS 345
EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D SG S
Sbjct: 201 AELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS 250
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 251 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 297
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/321 (57%), Positives = 252/321 (78%), Gaps = 3/321 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ + K+
Sbjct: 180 VAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTN+YVKN++ T+++ + F +YG +TS+ + RD + GKS+ FGFVNF + +DA++A
Sbjct: 240 NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LN K+F + YVG+AQKK ERE EL+ +E +E A K+QG NLYIKNLDD +DD
Sbjct: 300 VQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDD 359
Query: 320 EKLKQLFSPFGSITSCKVMRD 340
EKL+QLFS FG ITS KVMRD
Sbjct: 360 EKLRQLFSEFGPITSAKVMRD 380
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 159/287 (55%), Gaps = 22/287 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G++ S +V D + +S GY +V ++ +KA+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D +G SK +GFV++E + A++A++ +NG ++K+ YVG K +R+
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFD 235
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGIS 345
E+K F N+Y+KN++ + D++ + LF +G +TS + RD +G S
Sbjct: 236 EMKANF-------------TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKS 282
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
RG GFV F++ E+AS+A+ E+N K + LYV AQ+K +R L+
Sbjct: 283 RGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELR 329
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 163/344 (47%), Gaps = 75/344 (21%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ + A++A
Sbjct: 147 GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQA 205
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSL--------RKSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +N LN K +V H P K+ NI++KN++ + F
Sbjct: 206 IKHVNGMLLNEK--KVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFE 263
Query: 134 AFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+G++ S +A D G+S+G+GFV F + E A KA+++LN + + +YVG +K E
Sbjct: 264 KYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHE 323
Query: 193 RDTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-- 238
R+ E+ KS + N+Y+KNL + +E L++ F E+G ITSA VMRD
Sbjct: 324 REEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
Query: 239 ----------------------------DGKSK-----------------CFGFVNFENS 253
D K + FGFV F N
Sbjct: 384 EPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANP 443
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
DDA +AV +N + ++K YV AQ+K R K+Q EQ+++
Sbjct: 444 DDATKAVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 38/47 (80%)
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
GFV F+ P++A++A+ EMN +MV +KPLYVALAQRK+ R+ +L+ +
Sbjct: 436 GFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQSI 482
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/314 (60%), Positives = 249/314 (79%), Gaps = 4/314 (1%)
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNIL
Sbjct: 82 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 141
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-- 197
SCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 142 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 200
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +DA
Sbjct: 201 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 260
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD I
Sbjct: 261 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 320
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLY
Sbjct: 321 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 379
Query: 378 VALAQRKEDRRARL 391
VALAQRKE+R+A L
Sbjct: 380 VALAQRKEERQAHL 393
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 112 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 169
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F F
Sbjct: 170 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 229
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 230 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 289
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 290 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 347
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 348 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 401
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 136/227 (59%), Gaps = 15/227 (6%)
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGE 225
++A++ +N ++ K V + +RD + KS N+++KNL +S + L +F
Sbjct: 81 ERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 136
Query: 226 YGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
+G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ERE
Sbjct: 137 FGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 195
Query: 286 LELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS 345
EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D SG S
Sbjct: 196 AELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS 245
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 246 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 292
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/329 (57%), Positives = 251/329 (76%), Gaps = 2/329 (0%)
Query: 35 VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94
VT++ L++ F+ G V+S+RVCRDL RRSLGY YVNF +A RAL+ +NF + G+P
Sbjct: 4 VTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVKGRP 63
Query: 95 IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGY 154
IR+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++DTFSAFGNILSCKVATD SKGY
Sbjct: 64 IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGY 123
Query: 155 GFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSE 212
GFV F+ EE+A AI+K+NGMLLN ++V+VG F+ + ER+ ++ + +F NVY+KN +
Sbjct: 124 GFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFMNVYIKNFGD 183
Query: 213 STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
+E L++ F +YG ITSA VM D GK K FGFV+FE+ ++A +AV LN K+ + K
Sbjct: 184 DLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKV 243
Query: 273 WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSI 332
YVG+AQKKSER ELK +FEQ + +++QG NLY+KNLDDSIDDE+L++ F+PFG+I
Sbjct: 244 LYVGRAQKKSERAAELKRRFEQLKMDRINRYQGVNLYVKNLDDSIDDERLRKEFTPFGTI 303
Query: 333 TSCKVMRDPSGISRGSGFVAFSTPEEASR 361
TS KVM D +G S+G GFV FS PEEA++
Sbjct: 304 TSAKVMTDSNGRSKGFGFVCFSAPEEATK 332
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 153/271 (56%), Gaps = 15/271 (5%)
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+ L + FS+ G +LS +V DL + S GY +V F A++A++ +N ++ +
Sbjct: 4 VTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVKGRP 63
Query: 182 VYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+ + +RD + KS NV++KNL +S + + +F +G I S V D +
Sbjct: 64 IRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESN 119
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
SK +GFV+FE + A A++ +NG + ++ +VGK +SERE +L + + M
Sbjct: 120 SKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFM----- 174
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361
N+YIKN D +DDEKL+++F +G ITS KVM D +G +G GFV+F PE A +
Sbjct: 175 -----NVYIKNFGDDLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEK 229
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
A+ ++N K + K LYV AQ+K +R A L+
Sbjct: 230 AVNDLNNKELNGKVLYVGRAQKKSERAAELK 260
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/325 (57%), Positives = 247/325 (76%), Gaps = 3/325 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ F +YG S VM D GKSK FGFV+FE
Sbjct: 182 EMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA RAV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVM 338
DD +DDE+L++ FSPFG+ITS KVM
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVM 326
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 166/291 (57%), Gaps = 16/291 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE E M A +F N+YIKN + +DDEKLK++F +G S +VM D
Sbjct: 177 KEREAE--------MGARAKEF--TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A RA+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELK 277
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQR 383
P +A RAL MN ++ +P+ + +QR
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQR 89
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/314 (59%), Positives = 247/314 (78%), Gaps = 4/314 (1%)
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNIL
Sbjct: 2 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 61
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-- 197
SCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 62 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 120
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA
Sbjct: 121 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 180
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD I
Sbjct: 181 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 240
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP Y
Sbjct: 241 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFY 299
Query: 378 VALAQRKEDRRARL 391
VALAQRKE+R+A L
Sbjct: 300 VALAQRKEERQAHL 313
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 32 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 89
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 90 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 149
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 150 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 209
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 210 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 267
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K +YV AQ+K ER+ L +Q Q M
Sbjct: 268 KGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQHMQRM 321
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 135/227 (59%), Gaps = 15/227 (6%)
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGE 225
++A++ +N ++ K V + +RD + KS N+++KNL +S + L +F
Sbjct: 1 ERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 56
Query: 226 YGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
+G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ERE
Sbjct: 57 FGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 115
Query: 286 LELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS 345
EL + A +F N+YIKN + +DDE+LK LF FG S KVM D SG S
Sbjct: 116 AELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS 165
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 166 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 212
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/329 (56%), Positives = 245/329 (74%), Gaps = 2/329 (0%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G A NQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++
Sbjct: 35 GDAANNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYN 94
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N + RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+
Sbjct: 95 NTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFA 154
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFGNILSCKVA D SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R
Sbjct: 155 AFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR 214
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
++ K+ FTN+Y+KN+ T+++ + F +G ITSA + D DGKS+ FGFVN+
Sbjct: 215 QSKFEEMKANFTNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGKSRGFGFVNYA 274
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N + A AV +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+K
Sbjct: 275 NHESAEAAVAEMNEKEVKSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVK 334
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
NL D IDDEKL+ LF+P+G+ITS KVMRD
Sbjct: 335 NLTDDIDDEKLRDLFTPYGTITSAKVMRD 363
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 161/307 (52%), Gaps = 22/307 (7%)
Query: 91 NGKPIRVMY-SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LN 148
NG P+ + D + + + ++++ LD ++ L++ FS+ G + S +V D +
Sbjct: 23 NGAPVEATPEAAGDAANNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVT 82
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVK 208
+S GY +V ++N ++A+E LN L+ K + +RD + K+ NV++K
Sbjct: 83 RRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIK 138
Query: 209 NLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF 268
NL + + L +F +G I S V +D SK +GFV++E ++ A A++ +NG
Sbjct: 139 NLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLL 198
Query: 269 DDKEWYVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQL 325
+DK+ +VG K +R+ E+K F N+YIKN+D I D++ + +
Sbjct: 199 NDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDLEITDDEFRTM 245
Query: 326 FSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385
F FG ITS + D G SRG GFV ++ E A A+ EMN K V S+ LYV AQ+K
Sbjct: 246 FEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKSQKLYVGRAQKKH 305
Query: 386 DRRARLQ 392
+R L+
Sbjct: 306 EREEELR 312
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 43/53 (81%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ RR++L+ +
Sbjct: 424 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 476
>gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/235 (79%), Positives = 210/235 (89%)
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
AQ AI+KLNGML+NDKQVYVGHFLRKQER++ +KF NVYVKNLSESTT++ L+K FG
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDGLKKVFG 60
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
E+G ITSAVVMRD DGKSKCFGF+NFE ++DAA+AVE+LNGKKFDDKEWYVGKAQKKSER
Sbjct: 61 EFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSER 120
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
E ELK +FEQ KEA DK+QG NLY+KNLDD+IDDEKLK+LFS FG+ITSCKVMRDPSGI
Sbjct: 121 EQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGI 180
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
SRGSGFVAFST EEASRAL EMNGKM+VSKPLYVALAQRKE+RRA+L+ Q R
Sbjct: 181 SRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLRAQFSQLR 235
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 107/196 (54%), Gaps = 18/196 (9%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+YV +L + TD L +F + G + S V RD + +S +G++NF A++AA+A+E L
Sbjct: 41 VYVKNLSESTTDDGLKKVFGEFGNITSAVVMRD-ADGKSKCFGFINFETAEDAAKAVESL 99
Query: 86 NFTPLNGKPIRV----MYSHRDPSLR------------KSGAGNIFIKNLDKAIDHKALH 129
N + K V S R+ L+ K N+++KNLD ID + L
Sbjct: 100 NGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLK 159
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
+ FS FG I SCKV D +G S+G GFV F E A +A+ ++NG ++ K +YV R
Sbjct: 160 ELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQR 219
Query: 190 KQERDTEINKSKFTNV 205
K+ER ++ +++F+ +
Sbjct: 220 KEERRAKL-RAQFSQL 234
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 182/320 (56%), Positives = 245/320 (76%), Gaps = 2/320 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 114 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 173
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ +E+AQ+AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 174 VAQDETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 233
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+KN++ T++ + F +G +TS+ + RD DGKS+ FGFVNF + A+ AV
Sbjct: 234 NFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAV 293
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K F +E YVG+AQKK ERE EL+ +E E A K+QG NLYIKNLDD +DDE
Sbjct: 294 EELNNKDFHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDE 353
Query: 321 KLKQLFSPFGSITSCKVMRD 340
KL+ +F+ FG ITS KVMRD
Sbjct: 354 KLRTMFTEFGPITSAKVMRD 373
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 153/286 (53%), Gaps = 21/286 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G + S +V D + +S GY +V +++ +KA+
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 114 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 169
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D G SK +GFV++E + A +A++ +NG ++K+ YVG K +R+
Sbjct: 170 LSCKVAQDETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 229
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+YIKN+ + D++ + LF G +TS + RDP G SR
Sbjct: 230 EMKANF-------------TNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSR 276
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G GFV F+T E AS A+ E+N K + LYV AQ+K +R L+
Sbjct: 277 GFGFVNFTTHEAASAAVEELNNKDFHGQELYVGRAQKKHEREEELR 322
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 38/47 (80%)
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
GFV FS P++A++A+ EMN +M+ KPLYVALAQRK+ R+++L+ +
Sbjct: 433 GFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEASI 479
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/316 (59%), Positives = 247/316 (78%), Gaps = 4/316 (1%)
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGYGFV F+ +E+A++ EK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERVSEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 363 LYVALAQRKEERQAHL 378
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A R
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERV 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 SEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 145/253 (57%), Gaps = 23/253 (9%)
Query: 147 LNGQSKGYGFVQFDNEES-------AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
L G ++G G++ N E+ A++A++ +N ++ K V + +RD + K
Sbjct: 41 LGGHARG-GWLAPRNPEAPRTAHGRAERALDTMNFDVIKGKPVRIMW----SQRDPSLRK 95
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
S N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE + A R
Sbjct: 96 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERV 154
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
E +NG +D++ +VG+ + + ERE EL + A +F N+YIKN + +DD
Sbjct: 155 SEKMNGMLLNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDD 204
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
E+LK LF FG S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 380 LAQRKEDRRARLQ 392
AQ+K +R+ L+
Sbjct: 265 RAQKKVERQTELK 277
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/383 (52%), Positives = 277/383 (72%), Gaps = 5/383 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +
Sbjct: 103 AAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLAD 162
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RD LRKSG GN+FIKNLD++ID+K L++ FSAFG
Sbjct: 163 AQRALDTMNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK 222
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G S+GY FV F N+ +A +AIE++NG LL D +++VG F +++R+ E+
Sbjct: 223 ILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAEL 281
Query: 198 -NKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK+ +FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 282 RNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 341
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + + +VG+AQKKSER+ ELK FEQ +E + QG LYIKNLDD
Sbjct: 342 AKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQLKQERFRRCQGMKLYIKNLDD 401
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL + FS FGSI+ K+MR+ G S+G G + FS+PEEA++A+ EMNG+++ SKP
Sbjct: 402 TIDDEKLWREFSSFGSISRVKIMRE-EGRSKGFGLICFSSPEEATKAMAEMNGRILGSKP 460
Query: 376 LYVALAQRKEDRRA-RLQVCLLQ 397
LY+ALAQ+ +R A + CL Q
Sbjct: 461 LYIALAQKPXERNAYHGRPCLQQ 483
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/371 (53%), Positives = 272/371 (73%), Gaps = 4/371 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +A
Sbjct: 105 KYRQASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQ 164
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+AL+ +NF + GKPIR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FSAFG IL
Sbjct: 165 KALDTMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 224
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-N 198
S KV +D G S+GY FV F N+ +A +AIE++NG LL D +++VG F +++R+ E+ N
Sbjct: 225 SSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 283
Query: 199 K-SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
K ++FTNVYVKN + +E L++ F +YG S VM D GKSK FGFV+F++ + A
Sbjct: 284 KVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHEAAK 343
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVE +NGK + + +VG+AQKKSER+ ELK FEQ +E + QG LYIKNLDD+I
Sbjct: 344 KAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTI 403
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDEKL + FS FGSI+ K+MR+ G S+G G + FS+PEEA++A+ EMNG+++ SKPLY
Sbjct: 404 DDEKLWREFSSFGSISRVKIMRE-EGRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLY 462
Query: 378 VALAQRKEDRR 388
+ALAQR +R+
Sbjct: 463 IALAQRPXERK 473
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 163/289 (56%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FSA G +LS ++ DL +S GY +V F AQKA++
Sbjct: 109 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 168
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + KS NV++KNL +S + L + F +G I
Sbjct: 169 TMNFDMIKGKPIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 224
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G S+ + FV+F+N + A RA+E +NG D +VG+ + + +RE EL++
Sbjct: 225 SSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 283
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ + N+Y+KN D +DDE+LK++FS +G S KVM D G S+G GF
Sbjct: 284 KVNEF----------TNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGF 333
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
V+F + E A +A+ EMNGK V + L+V AQ+K +R+A L+ Q +
Sbjct: 334 VSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLK 382
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 110/202 (54%), Gaps = 20/202 (9%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
N+F T++YV + ++ D +L ++F++ G+ +SV+V D S +S G+G+V+F + +
Sbjct: 285 VNEF--TNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTD-SGGKSKGFGFVSFDSHEA 341
Query: 78 AARALEMLNFTPLNGKPIRV---------------MYSH-RDPSLRKSGAGNIFIKNLDK 121
A +A+E +N +NG+ + V M+ + R+ ++IKNLD
Sbjct: 342 AKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDD 401
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
ID + L FS+FG+I K+ + G+SKG+G + F + E A KA+ ++NG +L K
Sbjct: 402 TIDDEKLWREFSSFGSISRVKIMRE-EGRSKGFGLICFSSPEEATKAMAEMNGRILGSKP 460
Query: 182 VYVGHFLRKQERDTEINKSKFT 203
+Y+ R ER +++ F
Sbjct: 461 LYIALAQRPXERKNFLHQPVFA 482
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/378 (51%), Positives = 261/378 (69%), Gaps = 36/378 (9%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG------------------------- 97
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
V D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 98 -------VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 149
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE
Sbjct: 150 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 209
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 210 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 269
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 270 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 328
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 329 KPLYVALAQRKEERQAHL 346
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 149/291 (51%), Gaps = 48/291 (16%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSG-------------------- 97
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 98 ------------VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 144
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 145 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 194
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 195 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 245
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 152 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 208
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 209 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 267
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 268 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 326
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 327 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 355
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVC 394
F P +A RAL MN ++ KP+ + +QR R VC
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVVC 100
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/344 (57%), Positives = 261/344 (75%), Gaps = 7/344 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N GG N + SLYVGDL ++VT + L++ F+ G V+S+RVC+D+ TRRSLGY Y
Sbjct: 2 NQGPGGPN---YPMASLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAY 58
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
VNF +A RAL+ +NF L G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++
Sbjct: 59 VNFQQPADAERALDTMNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMY 118
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+K+NGMLLN K+V+VG F+
Sbjct: 119 DTFSAFGNILSCKVAQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVGKFIP 178
Query: 190 KQERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E+ K+K FTNVYVKN E T++ L++ F +YG ITS V+ + D KS+ FGF
Sbjct: 179 RKEREKELGEKAKLFTNVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSRGFGF 238
Query: 248 VNFENSDDAARAVEALNGKK-FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
V FE+ + A RAVE LNGK+ + K+ YVG+AQKK+ER+ ELK +FEQ E +++QG
Sbjct: 239 VAFEDPEAAERAVEDLNGKEIIEGKQLYVGRAQKKAERQQELKRKFEQLKMERMNRYQGV 298
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
NLY+KNLDD+IDDE+L++ FSPFG+ITS KVM + S+G GF
Sbjct: 299 NLYVKNLDDTIDDERLRKEFSPFGTITSAKVMLEERR-SKGFGF 341
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 158/289 (54%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 14 SLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERALDT 73
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L + + + +RD + KS NV++KNL ++ + + +F +G I S
Sbjct: 74 MNFDTLKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILS 129
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V +D G SK +GFV+FE + A ++++ +NG + K+ +VGK + ERE EL
Sbjct: 130 CKVAQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVGKFIPRKEREKELG-- 187
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + D+ LK++F +G ITS V+ + SRG GFV
Sbjct: 188 ------EKAKLF--TNVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSRGFGFV 239
Query: 352 AFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRRARLQVCLLQCR 399
AF PE A RA+ ++NGK ++ K LYV AQ+K +R+ L+ Q +
Sbjct: 240 AFEDPEAAERAVEDLNGKEIIEGKQLYVGRAQKKAERQQELKRKFEQLK 288
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/325 (57%), Positives = 249/325 (76%), Gaps = 3/325 (0%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 53 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 112
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNI
Sbjct: 113 ERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 172
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
LSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++
Sbjct: 173 LSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFE 232
Query: 199 --KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDD 255
K+ FTN+YVKN+ + T+E+ + F +YG ITSA + RD + GKS+ FGFVNF + +
Sbjct: 233 EMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEA 292
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A+ AVEALN + ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D
Sbjct: 293 ASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSD 352
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LFS +G+ITS KVMR+
Sbjct: 353 DIDDEKLRELFSSYGNITSAKVMRE 377
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 122/397 (30%), Positives = 201/397 (50%), Gaps = 65/397 (16%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 144 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNA 202
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ NI++KN+++ + + F +
Sbjct: 203 IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKY 262
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I S ++ D G+S+G+GFV F + E+A A+E LN L +++YVG +K ER+
Sbjct: 263 GEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHERE 322
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L++ F YG ITSA VMR+
Sbjct: 323 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMREA---- 378
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
V+ + + + K+ DK G+++ +SE
Sbjct: 379 ----IVDVPAETEKGKEADKEKAKEAGDKSEEKGESKSESE------------------- 415
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
D S +EK + G S K + G S+G GFV FS P+EAS+A
Sbjct: 416 -----------DKSKSEEKSE------GKTESAKPEKRHLGKSKGFGFVCFSNPDEASKA 458
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
+ EMN +MV KPLYVALAQRK+ R+++L+ +Q R
Sbjct: 459 VTEMNQRMVHGKPLYVALAQRKDVRKSQLEAS-IQAR 494
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 157/294 (53%), Gaps = 22/294 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ + + +RD + K+ NV++KNL + + L +
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+Y+KN++ + DE+ + LF +G ITS + R
Sbjct: 226 DRQSKFEEMKANF-------------TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSR 272
Query: 340 D-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
D +G SRG GFV FS E AS A+ +N + + LYV AQ+K +R L+
Sbjct: 273 DNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELR 326
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/317 (59%), Positives = 250/317 (78%), Gaps = 4/317 (1%)
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 109 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 168
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 169 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 227
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S V+ D GKSK FGFV+FE +
Sbjct: 228 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDESGKSKGFGFVSFERHE 287
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 288 DARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 347
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 348 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 406
Query: 375 PLYVALAQRKEDRRARL 391
PLYVALAQRKE+R+A L
Sbjct: 407 PLYVALAQRKEERQAHL 423
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 142 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 199
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 200 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 259
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A+KA++++NG LN KQ+YVG +K ER T
Sbjct: 260 GPALSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQT 319
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 320 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 377
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 378 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 431
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 136/228 (59%), Gaps = 15/228 (6%)
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L +F
Sbjct: 110 AERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 165
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ER
Sbjct: 166 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 224
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
E EL + A +F N+YIKN + +DDE+LK LF FG S KV+ D SG
Sbjct: 225 EAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDESGK 274
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 275 SKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 322
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/329 (54%), Positives = 252/329 (76%), Gaps = 2/329 (0%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G A+ + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++
Sbjct: 52 GAQAAHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYN 111
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
+ +ALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+
Sbjct: 112 TTIDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFA 171
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFGNILSCKVA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+V+VGH + K++R
Sbjct: 172 AFGNILSCKVAQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDR 231
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
++ K+ FTN+YVKN+ T++ ++ F ++G +TSA + RD GK++ FGFVNF
Sbjct: 232 QSKFEEMKANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNFI 291
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N + A+ AV+ LNGK F ++ YVG+AQKK ERE EL+ +E E A K+QG NLY+K
Sbjct: 292 NHEHASAAVDELNGKDFMGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVK 351
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
NL+D +DDEKL++LF+P+G+ITS KVMRD
Sbjct: 352 NLEDDVDDEKLRELFAPYGAITSAKVMRD 380
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 154/284 (54%), Gaps = 21/284 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + FS G++ S +V D + +S GY +V ++ +KA+E+
Sbjct: 63 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKALEE 122
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ + + +RD + K+ NV++KNL + + L +F +G I S
Sbjct: 123 LNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILS 178
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL---EL 288
V +D G SK +GFV++E + A++A++ +NG ++K+ +VG K +R+ E+
Sbjct: 179 CKVAQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEM 238
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
K F N+Y+KN+ D++ ++LF FG +TS + RD +G +RG
Sbjct: 239 KANF-------------TNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGF 285
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
GFV F E AS A+ E+NGK + + LYV AQ+K +R L+
Sbjct: 286 GFVNFINHEHASAAVDELNGKDFMGQDLYVGRAQKKHEREEELR 329
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 42/53 (79%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV F+ P+EA++A+ EMN +MV KPLYVALAQRK+ R+++L+ +
Sbjct: 447 GKSKGFGFVCFNNPDEATKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASI 499
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/339 (55%), Positives = 253/339 (74%), Gaps = 3/339 (0%)
Query: 5 QAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
+A G+ +Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRS
Sbjct: 55 EAAGEPSGTSAPATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRS 114
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
LGY YVN++N + RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID
Sbjct: 115 LGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAID 174
Query: 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
+KALHDTF+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+V
Sbjct: 175 NKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV 234
Query: 185 GHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GK 241
GH + K++R ++ K+ FTN+YVKN+ + T+E+ + F +YG ITSA + RD + GK
Sbjct: 235 GHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGK 294
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
S+ FGFVNF + + A+ AVEALN + ++ YVG+AQKK ERE EL+ Q+E E A
Sbjct: 295 SRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKAS 354
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
K+QG NLYIKNL D IDDEKL++LFS +G+ITS KVMR+
Sbjct: 355 KYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 393
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 123/395 (31%), Positives = 196/395 (49%), Gaps = 63/395 (15%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 160 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNA 218
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ NI++KN+++ + + F +
Sbjct: 219 IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKY 278
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I S ++ D G+S+G+GFV F + E+A A+E LN L +++YVG +K ER+
Sbjct: 279 GEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHERE 338
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L++ F YG ITSA VMR+
Sbjct: 339 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE----- 393
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
V E D E + D E K + KSE E
Sbjct: 394 -AIVDVPAETEKDKEADKEKAKKETGDKSEE---KGESKSESE----------------- 432
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
D S +EK + G S K + G S+G GFV FS P+EAS+A
Sbjct: 433 -----------DKSKSEEKTE------GKTESAKPEKKHLGKSKGFGFVCFSNPDEASKA 475
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
+ EMN +MV KPLYVALAQRK+ R++++ ++
Sbjct: 476 VTEMNQRMVHGKPLYVALAQRKDVRKSQVSTKVIH 510
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 157/294 (53%), Gaps = 22/294 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 66 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 125
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ + + +RD + K+ NV++KNL + + L +
Sbjct: 126 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 181
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K
Sbjct: 182 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 241
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+Y+KN++ + DE+ + LF +G ITS + R
Sbjct: 242 DRQSKFEEMKANF-------------TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSR 288
Query: 340 D-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
D +G SRG GFV FS E AS A+ +N + + LYV AQ+K +R L+
Sbjct: 289 DNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELR 342
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G S K G+SKG+GFV F N + A KA+ ++N +++ K +YV RK R +
Sbjct: 443 GKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKS 502
Query: 196 EIN-------KSKFTNVY 206
+++ +S+ TN+Y
Sbjct: 503 QVSTKVIHFLRSQVTNIY 520
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/325 (57%), Positives = 249/325 (76%), Gaps = 3/325 (0%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 53 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 112
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNI
Sbjct: 113 ERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 172
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
LSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++
Sbjct: 173 LSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFE 232
Query: 199 --KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDD 255
K+ FTN+YVKN+ + T+E+ + F +YG ITSA + RD + GKS+ FGFVNF + +
Sbjct: 233 EMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEA 292
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A+ AVEALN + ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D
Sbjct: 293 ASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSD 352
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LFS +G+ITS KVMR+
Sbjct: 353 DIDDEKLRELFSSYGNITSAKVMRE 377
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 197/393 (50%), Gaps = 63/393 (16%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 144 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNA 202
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ NI++KN+++ + + F +
Sbjct: 203 IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKY 262
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I S ++ D G+S+G+GFV F + E+A A+E LN L +++YVG +K ER+
Sbjct: 263 GEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHERE 322
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L++ F YG ITSA VMR
Sbjct: 323 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMR------ 376
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
E DA E + + G KSE + E K + E
Sbjct: 377 --------EAIVDAPAEAEKDKEADKEKAKKEAGD---KSEEKGEAKSESE--------- 416
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
D S +EK + G S K + G S+G GFV FS P+EAS+A
Sbjct: 417 -----------DKSKSEEKTE------GKTESAKPEKKHLGKSKGFGFVCFSNPDEASKA 459
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
+ EMN +MV KPLYVALAQRK+ R+++L+ +
Sbjct: 460 VTEMNQRMVHGKPLYVALAQRKDVRKSQLEASI 492
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 17/191 (8%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV L S TE L + F G + S V RD +S + +VN+ N+ D RA+E
Sbjct: 58 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 117
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN + + S+R+ L+ K N++IKNLD +ID++
Sbjct: 118 DLNYTLIKGRPCRI----MWSQRDPALR------------KTGQGNVFIKNLDTAIDNKA 161
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L F+ FG+I SCKV +D G S+G GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 162 LHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHH 221
Query: 382 QRKEDRRARLQ 392
K+DR+++ +
Sbjct: 222 IAKKDRQSKFE 232
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/316 (61%), Positives = 248/316 (78%), Gaps = 4/316 (1%)
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 71 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 130
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 131 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 189
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+FE +D
Sbjct: 190 GAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHED 249
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD
Sbjct: 250 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 309
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKP
Sbjct: 310 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 368
Query: 376 LYVALAQRKEDRRARL 391
LYVALAQRKE+R+A L
Sbjct: 369 LYVALAQRKEERKAHL 384
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 168/293 (57%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 103 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 160
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + FS +
Sbjct: 161 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKY 220
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 221 GKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 280
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I++ + N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 281 ELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSK 339
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 340 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 392
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 140/229 (61%), Gaps = 15/229 (6%)
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N ++ K + + +RD + KS NV++KNL +S + L +F
Sbjct: 70 PAERALDTMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 125
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + E
Sbjct: 126 SAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKE 184
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL + A +F N+YIKN D +DDE+LK+LFS +G S KVM DP+G
Sbjct: 185 REAELGAK--------AKEF--TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTG 234
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S+G GFV+F E+A++A+ EMNGK + K ++V AQ+K +R+A L+
Sbjct: 235 KSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 283
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/325 (57%), Positives = 249/325 (76%), Gaps = 3/325 (0%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 53 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 112
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNI
Sbjct: 113 ERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 172
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
LSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++
Sbjct: 173 LSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFE 232
Query: 199 --KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDD 255
K+ FTN+YVKN+ + T+E+ + F +YG ITSA + RD + GKS+ FGFVNF + +
Sbjct: 233 EMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEA 292
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A+ AVEALN + ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D
Sbjct: 293 ASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSD 352
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LFS +G+ITS KVMR+
Sbjct: 353 DIDDEKLRELFSSYGNITSAKVMRE 377
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/395 (31%), Positives = 196/395 (49%), Gaps = 63/395 (15%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 144 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNA 202
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ NI++KN+++ + + F +
Sbjct: 203 IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKY 262
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I S ++ D G+S+G+GFV F + E+A A+E LN L +++YVG +K ER+
Sbjct: 263 GEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHERE 322
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L++ F YG ITSA VMR+
Sbjct: 323 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE----- 377
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
V E D E + D E K + KSE E
Sbjct: 378 -AIVDVPAETEKDKEADKEKAKKEGGDKSEE---KGESKSESE----------------- 416
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
D S +EK + G S K + G S+G GFV FS P+EAS+A
Sbjct: 417 -----------DKSKSEEKTE------GKTESTKPEKKHLGKSKGFGFVCFSNPDEASKA 459
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
+ EMN +MV KPLYVALAQRK+ R++++ ++
Sbjct: 460 VTEMNQRMVHGKPLYVALAQRKDVRKSQVSTKVIH 494
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 157/294 (53%), Gaps = 22/294 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ + + +RD + K+ NV++KNL + + L +
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+Y+KN++ + DE+ + LF +G ITS + R
Sbjct: 226 DRQSKFEEMKANF-------------TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSR 272
Query: 340 D-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
D +G SRG GFV FS E AS A+ +N + + LYV AQ+K +R L+
Sbjct: 273 DNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELR 326
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G S K G+SKG+GFV F N + A KA+ ++N +++ K +YV RK R +
Sbjct: 427 GKTESTKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKS 486
Query: 196 EIN-------KSKFTNVY 206
+++ +S+FTN+Y
Sbjct: 487 QVSTKVIHLIRSQFTNIY 504
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/442 (46%), Positives = 282/442 (63%), Gaps = 76/442 (17%)
Query: 4 VQAQGQNVNGGGANA----NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL 59
V+AQG N + G + + SLYVG+L+ +VT++ L++LF+Q+G V S+R
Sbjct: 36 VEAQGDNADAAGPTPTTAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIR----- 90
Query: 60 STRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL 119
ALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNL
Sbjct: 91 ---------------------ALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNL 129
Query: 120 DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
D AID+KALHDTF+AFGNILSCKVA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+
Sbjct: 130 DVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNE 189
Query: 180 KQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K+VYVGH + K++R ++ K+ FTNVYVKN++ T+++ + F +G +TS+ + RD
Sbjct: 190 KKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIANEVTDDEFRDLFAAFGDVTSSSLARD 249
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
+GKS+ FGFVNF + AA+AVE LN K F ++ YVG+AQKK ERE EL+ +E
Sbjct: 250 QEGKSRGFGFVNFTTHEAAAKAVEDLNNKDFRGQDLYVGRAQKKHEREEELRKSYEAARL 309
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PS-------------- 342
E A+K+QG NLYIKNLDD +DDEKL+ LF+ FG ITS KVMRD P+
Sbjct: 310 EKANKYQGVNLYIKNLDDEVDDEKLRTLFADFGPITSAKVMRDTPTDSKEDEEGSSEEKE 369
Query: 343 -----------------------------GISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
G S+G GFV FS P++A++A+ EMN +MV
Sbjct: 370 KENKPEAEEKTEEKEGSEKKEKKSDKKLHGKSKGFGFVCFSNPDDATKAVAEMNQRMVHG 429
Query: 374 KPLYVALAQRKEDRRARLQVCL 395
KPLYVALAQRK+ R+++L+ +
Sbjct: 430 KPLYVALAQRKDVRKSQLEASI 451
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/309 (60%), Positives = 244/309 (78%), Gaps = 4/309 (1%)
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKF 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +F
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 119
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 179
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 239
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 240 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 298
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 299 RKEERQAHL 307
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 26 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 83
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 84 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 143
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 144 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 203
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 204 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 261
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 262 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 315
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE
Sbjct: 17 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 75
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A RA+E +NG +D++ +VG+ + + ERE EL + A +F N+YIK
Sbjct: 76 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIK 125
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N + +DDE+LK LF FG S KVM D SG S+G GFV+F E+A +A+ EMNGK +
Sbjct: 126 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 185
Query: 372 VSKPLYVALAQRKEDRRARLQ 392
K +YV AQ+K +R+ L+
Sbjct: 186 NGKQIYVGRAQKKVERQTELK 206
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/309 (60%), Positives = 244/309 (78%), Gaps = 4/309 (1%)
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKF 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +F
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 119
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 179
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 239
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 240 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 298
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 299 RKEERQAHL 307
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 26 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 83
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 84 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 143
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 144 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 203
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 204 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 261
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 262 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 315
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE
Sbjct: 17 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 75
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A RA+E +NG +D++ +VG+ + + ERE EL + A +F N+YIK
Sbjct: 76 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIK 125
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N + +DDE+LK LF FG S KVM D SG S+G GFV+F E+A +A+ EMNGK +
Sbjct: 126 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 185
Query: 372 VSKPLYVALAQRKEDRRARLQ 392
K +YV AQ+K +R+ L+
Sbjct: 186 NGKQIYVGRAQKKVERQTELK 206
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/325 (57%), Positives = 249/325 (76%), Gaps = 3/325 (0%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 53 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 112
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNI
Sbjct: 113 ERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 172
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
LSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++
Sbjct: 173 LSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFE 232
Query: 199 --KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDD 255
K+ FTN+YVKN+ + T+E+ + F +YG ITSA + RD + GKS+ FGFVNF + +
Sbjct: 233 EMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEA 292
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A+ AVEALN + ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D
Sbjct: 293 ASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSD 352
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LFS +G+ITS KVMR+
Sbjct: 353 DIDDEKLRELFSSYGNITSAKVMRE 377
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 124/391 (31%), Positives = 196/391 (50%), Gaps = 63/391 (16%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 144 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNA 202
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ NI++KN+++ + + F +
Sbjct: 203 IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKY 262
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I S ++ D G+S+G+GFV F + E+A A+E LN L +++YVG +K ER+
Sbjct: 263 GEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHERE 322
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L++ F YG ITSA VMR
Sbjct: 323 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMR------ 376
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
E DA E + + G KSE + E K + E
Sbjct: 377 --------EAIVDAPAEAEKDKEADKEKAKKEAGD---KSEEKGEAKSESE--------- 416
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
D S +EK + G S K + G S+G GFV FS P+EAS+A
Sbjct: 417 -----------DKSKSEEKTE------GKTESAKPEKKHLGKSKGFGFVCFSNPDEASKA 459
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQV 393
+ EMN +MV KPLYVALAQRK+ R+++L+
Sbjct: 460 VTEMNQRMVHGKPLYVALAQRKDVRKSQLET 490
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 97/190 (51%), Gaps = 17/190 (8%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV L S TE L + F G + S V RD +S + +VN+ N+ D RA+E
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN + + +Q+ A K N++IKNLD +ID++ L
Sbjct: 119 LNYTLIKGRPCRIMWSQRDP----------------ALRKTGQGNVFIKNLDTAIDNKAL 162
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
F+ FG+I SCKV +D G S+G GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 163 HDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 222
Query: 383 RKEDRRARLQ 392
K+DR+++ +
Sbjct: 223 AKKDRQSKFE 232
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/339 (55%), Positives = 253/339 (74%), Gaps = 3/339 (0%)
Query: 5 QAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
+A G++ +Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRS
Sbjct: 39 EAAGESSGTTAPATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRS 98
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
LGY YVN++N + RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID
Sbjct: 99 LGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAID 158
Query: 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
+KALHDTF+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+V
Sbjct: 159 NKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV 218
Query: 185 GHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GK 241
GH + K++R ++ K+ FTN+YVKN+ + T+E+ + F +YG ITSA + RD + GK
Sbjct: 219 GHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGK 278
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
S+ FGFVNF + + A+ AVE LN + ++ YVG+AQKK ERE EL+ Q+E E A
Sbjct: 279 SRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKAS 338
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
K+QG NLYIKNL D IDDEKL++LFS +G+ITS KVMR+
Sbjct: 339 KYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 121/393 (30%), Positives = 200/393 (50%), Gaps = 61/393 (15%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 144 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNA 202
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ NI++KN+++ + + F +
Sbjct: 203 IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKY 262
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I S ++ D G+S+G+GFV F + E+A A+E LN L +++YVG +K ER+
Sbjct: 263 GEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHERE 322
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L++ F YG ITSA VMR+
Sbjct: 323 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMREAISDV 382
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
++ + + G K +DK A+ KS+ + E K + E+ + D
Sbjct: 383 PA---DAEKDKEADKEKAKKETGDKPEDK------AETKSDEKSEDKSKSEEKTEGKTD- 432
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
GA K+L G S+G GFV FS P+EAS+A
Sbjct: 433 --GAKTEKKHL-----------------------------GKSKGFGFVCFSNPDEASKA 461
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
+ EMN +MV KPLYVALAQRK+ R+++L+ +
Sbjct: 462 VTEMNQRMVHGKPLYVALAQRKDVRKSQLEASI 494
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 17/190 (8%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV L S TE L + F G + S V RD +S + +VN+ N+ D RA+E
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN + + S+R+ L+ K N++IKNLD +ID++ L
Sbjct: 119 LNYTLIKGRPCRI----MWSQRDPALR------------KTGQGNVFIKNLDTAIDNKAL 162
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
F+ FG+I SCKV +D G S+G GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 163 HDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 222
Query: 383 RKEDRRARLQ 392
K+DR+++ +
Sbjct: 223 AKKDRQSKFE 232
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/317 (58%), Positives = 247/317 (77%), Gaps = 4/317 (1%)
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RALE +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL DTFSAFG
Sbjct: 133 DAERALETMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFG 192
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D +G SKGYGFV F+ ++A++AI+K+NGMLLND++V+VG F ++ER+ E
Sbjct: 193 NILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 251
Query: 197 INK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E + L++ FG++G S VM D G SK FGFVNFE +
Sbjct: 252 LGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDESGTSKGFGFVNFERHE 311
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AVE +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 312 DAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLD 371
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 372 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 430
Query: 375 PLYVALAQRKEDRRARL 391
PLY+ALAQRKE+R+A L
Sbjct: 431 PLYIALAQRKEERQAHL 447
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F+ G ++S +V D S GYG+V+F A RA
Sbjct: 166 GVGNIFIKNLDKSIDNKALFDTFSAFGNILSCKVVCD--EHGSKGYGFVHFETRDAAERA 223
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN + + V + R + GA N++IKN + +D L F F
Sbjct: 224 IDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDLRLKRLFGKF 283
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G SKG+GFV F+ E AQKA+E++NG LN K++YVG +K ER T
Sbjct: 284 GPALSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQT 343
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 344 EL-KRKFEQLKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 401
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K Y+ AQ+K ER+ L +Q+ Q M
Sbjct: 402 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYIALAQRKEERQAHLTNQYMQRM 455
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 134/228 (58%), Gaps = 15/228 (6%)
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A++A+E +N ++ K V + +RD + KS N+++KNL +S + L +F
Sbjct: 134 AERALETMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFS 189
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+G I S V+ D G SK +GFV+FE D A RA++ +NG +D++ +VG+ + + ER
Sbjct: 190 AFGNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKER 248
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
E EL + A +F N+YIKN + +DD +LK+LF FG S KVM D SG
Sbjct: 249 EAELGAR--------AKEF--TNVYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDESGT 298
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S+G GFV F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 299 SKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELK 346
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/324 (58%), Positives = 245/324 (75%), Gaps = 3/324 (0%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 50 QPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGE 109
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNIL
Sbjct: 110 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN- 198
SCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 229
Query: 199 -KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDA 256
K+ FTNVYVKNL T E+ ++ F +YG ITSA + RD + GKS+ FGFVNF N D A
Sbjct: 230 MKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSA 289
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
A AVE LN K++ ++ YVG+AQKK ERE EL+ Q E E A K+QG NLY+KNL D
Sbjct: 290 AAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDD 349
Query: 317 IDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL+ LF FG+ITS +VMRD
Sbjct: 350 IDDEKLRDLFIGFGNITSARVMRD 373
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/397 (31%), Positives = 200/397 (50%), Gaps = 70/397 (17%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 140 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAATNA 198
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ N+++KNL+ + ++ + F +
Sbjct: 199 IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKY 258
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I S ++ D G+S+G+GFV F N +SA A+E LN +++YVG +K ER+
Sbjct: 259 GEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHERE 318
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+YVKNL++ +E L+ F +G ITSA VMRD
Sbjct: 319 EELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARVMRD----- 373
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
+ A +SE+E E ++N+KE K
Sbjct: 374 -------------------------------TISDAGSESEKEKEASKDNKENVKEETKK 402
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
G +DS EK + P + K + G S+G GFV FS P+EAS+A
Sbjct: 403 EAGG-------EDSA--EKTDKAEKPDTKKPTDKKL----GKSKGFGFVCFSNPDEASKA 449
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
+ EMN +MV KPLYVALAQRK+ R+++L+ +Q R
Sbjct: 450 VTEMNQRMVNGKPLYVALAQRKDVRKSQLEAS-IQAR 485
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 157/294 (53%), Gaps = 22/294 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L + FS+ G + S +V D + +S GY +V ++N
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 221
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+Y+KNL+ + +E+ ++LF +G ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYVKNLEPEVTNEEFRELFEKYGEITSASLSR 268
Query: 340 D-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
D +G SRG GFV F + A+ A+ ++N K + LYV AQ+K +R L+
Sbjct: 269 DNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELR 322
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/309 (59%), Positives = 243/309 (78%), Gaps = 4/309 (1%)
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKF 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +F
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 119
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 179
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 239
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP YVALAQ
Sbjct: 240 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQ 298
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 299 RKEERQAHL 307
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 26 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 83
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 84 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 143
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 144 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 203
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 204 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 261
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K +YV AQ+K ER+ L +Q Q M
Sbjct: 262 KGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQHMQRM 315
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE
Sbjct: 17 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 75
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A RA+E +NG +D++ +VG+ + + ERE EL + A +F N+YIK
Sbjct: 76 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIK 125
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N + +DDE+LK LF FG S KVM D SG S+G GFV+F E+A +A+ EMNGK +
Sbjct: 126 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 185
Query: 372 VSKPLYVALAQRKEDRRARLQ 392
K +YV AQ+K +R+ L+
Sbjct: 186 NGKQIYVGRAQKKVERQTELK 206
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/327 (55%), Positives = 250/327 (76%), Gaps = 3/327 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+NAN + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN+++A
Sbjct: 49 SNANP-NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 107
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 108 NDGERALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAF 167
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R +
Sbjct: 168 GNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKKDRMS 227
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+YVKN+ T+++ + F +YG ITSA + D +GKS+ FGFVN+
Sbjct: 228 KFEEMKANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRH 287
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE LN F + YVG+AQKK ERE EL+ Q+E +E + K+QG NLY+KNL
Sbjct: 288 EDANKAVEELNNSDFKGQALYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNL 347
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD 340
D IDD++L+++F P+G+ITS KVMRD
Sbjct: 348 ADEIDDDELRKIFEPYGAITSAKVMRD 374
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 154/293 (52%), Gaps = 21/293 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
PS + ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++
Sbjct: 48 PSNANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 107
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E+LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 108 NDGERALEELNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDT 163
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++++NG ++K+ +VG K
Sbjct: 164 FAAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKK 223
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R E+K F N+Y+KN+D D++ + LF +G ITS +
Sbjct: 224 DRMSKFEEMKANF-------------TNIYVKNIDPEATDDEFRALFEKYGDITSASLAH 270
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
D G SRG GFV + E+A++A+ E+N + LYV AQ+K +R L+
Sbjct: 271 DQEGKSRGFGFVNYIRHEDANKAVEELNNSDFKGQALYVGRAQKKHEREEELR 323
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/370 (52%), Positives = 272/370 (73%), Gaps = 3/370 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL VT++ LY+ F+QMG V+S+RVCRD +R+SLGY YVN+ +A ALE
Sbjct: 8 ASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALE 67
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF ++ KP R+M++ R+P+ R+SGAGNIFIKNL+K ID+KAL+DTFSAFG ILSCKV
Sbjct: 68 ELNFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGTILSCKV 127
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
A D G+S+GYGFV F+ EE AQKAI+ +NG +L + V V FL ++ER+ + ++ +T
Sbjct: 128 AADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLLKQVVTVTKFLSRKEREQQGGRT-YT 186
Query: 204 NVYVKNLSES-TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
N+YVKNL +S T +DL+K F ++GTITS + +D + KS+ FGFVNFENS+ A AVEA
Sbjct: 187 NIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAVEA 246
Query: 263 LNGKKFD-DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+N K+ + D++ +VG+A KK ERE ELK ++ +E +K + +NLYIK+L + + ++
Sbjct: 247 MNEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDA 306
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ FS FG+ITS K+M D +G SRG GFV F + +EA+ A+ EM+G M+ KPLYVALA
Sbjct: 307 LRDKFSKFGTITSLKIMTDNNGDSRGFGFVNFDSADEAAAAIQEMHGSMIDGKPLYVALA 366
Query: 382 QRKEDRRARL 391
RK DR+ +L
Sbjct: 367 LRKVDRQKQL 376
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358
A+ Q A+LY+ +L + + L + FS GS+ S +V RD S S G +V + +
Sbjct: 2 AEHQQNASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHAD 61
Query: 359 ASRALLEMNGKMVVSKPLYVALAQR 383
A AL E+N + + KP + AQR
Sbjct: 62 AKHALEELNFEKIHDKPCRIMWAQR 86
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/320 (56%), Positives = 247/320 (77%), Gaps = 2/320 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++++++ +AL
Sbjct: 46 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 105
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 106 EELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCK 165
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K+ER ++ K+
Sbjct: 166 VAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKA 225
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ T+++ + F ++G ITSA + RD GKS+ FGFVN+ + A+ AV
Sbjct: 226 NFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASVAV 285
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN +F ++ YVG+AQKK ERE EL+ Q+E E K+QG NLYIKNL+D +DDE
Sbjct: 286 ETLNDTEFHGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDE 345
Query: 321 KLKQLFSPFGSITSCKVMRD 340
KL+ +F+PFG+ITS KVMRD
Sbjct: 346 KLRDMFTPFGTITSAKVMRD 365
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 151/283 (53%), Gaps = 15/283 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++ E +KA+
Sbjct: 46 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 105
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN ++ K + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 106 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 161
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K ER
Sbjct: 162 LSCKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 217
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+FE+ K N+Y+KN+D + D++ + LF G ITS + RD G SRG G
Sbjct: 218 SKFEEM------KANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFG 271
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
FV + E AS A+ +N + LYV AQ+K +R L+
Sbjct: 272 FVNYIKHEAASVAVETLNDTEFHGQKLYVGRAQKKHEREEELR 314
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 102/246 (41%), Gaps = 73/246 (29%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +++ +VTD + DLF + G + S + RD +S G+G+VN+ + A+ A+E
Sbjct: 228 TNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARD-DQGKSRGFGFVNYIKHEAASVAVE 286
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDH-- 125
LN T +G+ + R H R+ LRK N++IKNL+ +D
Sbjct: 287 TLNDTEFHGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEK 346
Query: 126 --------------KALHDTFSA------------------------------------- 134
K + D A
Sbjct: 347 LRDMFTPFGTITSAKVMRDAMPADRSDSPSDKKEEEKDGKEESKETEGEAKEDSTDDKKE 406
Query: 135 ---FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
G+ ++ K + G+SKG+GFV F N + A KA+ ++N +L K +YV RK
Sbjct: 407 DTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMLEGKPLYVALAQRKD 466
Query: 192 ERDTEI 197
R ++
Sbjct: 467 VRKNQL 472
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
+DS DD+K + G + K + G S+G GFV FS P+EA++A+ EMN KM+
Sbjct: 398 EDSTDDKKED---TKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMLEG 454
Query: 374 KPLYVALAQRKEDRRARLQVCL 395
KPLYVALAQRK+ R+ +L+ +
Sbjct: 455 KPLYVALAQRKDVRKNQLEATI 476
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
GKSK FGFV F N D+A +AV +N K + K YV AQ+K R+ +L+
Sbjct: 424 GKSKGFGFVCFSNPDEATKAVTEMNQKMLEGKPLYVALAQRKDVRKNQLE 473
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/327 (55%), Positives = 249/327 (76%), Gaps = 3/327 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++++ + +AL
Sbjct: 56 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKAL 115
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 116 EELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCK 175
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++ K+
Sbjct: 176 VAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKA 235
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTNVYVKN+ T+++ ++ F +YG ITSA + D + GKS+ FGFVNF + AA+A
Sbjct: 236 NFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKA 295
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LN K + ++ YVG+AQKK ERE EL+ Q+E E K+QG NLY+KNL D +DD
Sbjct: 296 VDELNDKDWKGQKLYVGRAQKKHEREEELRKQYEAARAEKQSKYQGVNLYVKNLHDDVDD 355
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISR 346
EKL+ +F+PFG+ITS KVMRD + R
Sbjct: 356 EKLRDMFAPFGTITSAKVMRDTQPVGR 382
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 161/294 (54%), Gaps = 23/294 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
PS ++ A ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++
Sbjct: 50 PSAHQNSA-SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSS 108
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
+ +KA+E+LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 109 DDGEKALEELNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDT 164
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D +G SK +GFV++E ++ A A++A+NG ++K+ +VG K
Sbjct: 165 FAAFGNILSCKVAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKK 224
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R E+K F N+Y+KN+D + D++ ++LF +G ITS +
Sbjct: 225 DRMSKFEEMKANF-------------TNVYVKNIDLEVTDDEFRELFEKYGQITSASLAH 271
Query: 340 D-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
D +G SRG GFV F E A++A+ E+N K + LYV AQ+K +R L+
Sbjct: 272 DNETGKSRGFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGRAQKKHEREEELR 325
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 42/53 (79%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P+EA++A+ EMN KM+ KPLYVALAQRK+ R+++L+ +
Sbjct: 440 GKSKGFGFVCFSNPDEATKAVTEMNQKMMNGKPLYVALAQRKDVRKSQLEATI 492
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
GKSK FGFV F N D+A +AV +N K + K YV AQ+K R+ +L+
Sbjct: 440 GKSKGFGFVCFSNPDEATKAVTEMNQKMMNGKPLYVALAQRKDVRKSQLE 489
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/391 (50%), Positives = 274/391 (70%), Gaps = 26/391 (6%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G +++ F + SLYVGDL + ++ L+++FN +G V S+RVCRD TRRSLGY YVNF
Sbjct: 3 GASSSVPFHSASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFH 62
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N +A RAL+ +N+T + KP R+M+S RDP+LRKSG GN+F+KNLD +IDHKAL DTFS
Sbjct: 63 NVSDAERALDTMNYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDSSIDHKALFDTFS 122
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FGNILSCKVATD G+S+GYG+V +++E++A AI K+N M + DK+VYVGHF+R+ ER
Sbjct: 123 LFGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTER 182
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+S +TN+YVKN E L+K+F + DG + FG+VNFE
Sbjct: 183 S---GQSDWTNLYVKNFPADWDEATLRKAFEMFAA---------ADGSA--FGWVNFEGH 228
Query: 254 DDAARAVEALNGKK-----------FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
D A A++ALNG +VG+AQKK ERE ELK +F+ E K
Sbjct: 229 DAAVAAMDALNGASELPGHAGTAPITLKSPLFVGRAQKKVERERELKAKFDAAKIERIKK 288
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASR 361
+QG NL++KNLDD++DD++L++ F+ +G+ITS +VMR+P +G SRG GFV FS+PEEA++
Sbjct: 289 YQGVNLFVKNLDDALDDDQLREHFTEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAK 348
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
A+ EMN K+V+ KP++VALAQRKE RRA+L+
Sbjct: 349 AVTEMNNKLVLGKPIFVALAQRKEVRRAQLE 379
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 150/304 (49%), Gaps = 39/304 (12%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L++++ L+D F+ G ++S +V D RS GYGYV++ + A A
Sbjct: 99 GVGNVFVKNLDSSIDHKALFDTFSLFGNILSCKVATD-EAGRSQGYGYVHYESEDAATDA 157
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
+ +N + K + V + R +S N+++KN D L F F
Sbjct: 158 INKINSMTICDKEVYVGHFVRRTERSGQSDWTNLYVKNFPADWDEATLRKAFEMFA---- 213
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-----------LLNDKQVYVGHFLR 189
A D +G+V F+ ++A A++ LNG + ++VG +
Sbjct: 214 ---AAD----GSAFGWVNFEGHDAAVAAMDALNGASELPGHAGTAPITLKSPLFVGRAQK 266
Query: 190 KQERDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
K ER+ E+ K+KF N++VKNL ++ ++ L++ F EYGTITSA VMR
Sbjct: 267 KVEREREL-KAKFDAAKIERIKKYQGVNLFVKNLDDALDDDQLREHFTEYGTITSARVMR 325
Query: 237 D-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
+ G S+ FGFV F + ++AA+AV +N K K +V AQ+K R +L+ Q Q
Sbjct: 326 EPATGTSRGFGFVCFSSPEEAAKAVTEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQR 385
Query: 296 MKEA 299
+ A
Sbjct: 386 LHPA 389
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEES 164
++K N+F+KNLD A+D L + F+ +G I S +V + G S+G+GFV F + E
Sbjct: 286 IKKYQGVNLFVKNLDDALDDDQLREHFTEYGTITSARVMREPATGTSRGFGFVCFSSPEE 345
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
A KA+ ++N L+ K ++V RK+ R ++ ++ +LS
Sbjct: 346 AAKAVTEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQRLHPAHLS 392
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/366 (53%), Positives = 267/366 (72%), Gaps = 4/366 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +A
Sbjct: 6 KYRMASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQ 65
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLD++ID+K L++ FSAFG IL
Sbjct: 66 KALDTMNFDMIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKIL 125
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-N 198
S KV +D G SKGY FV F N+ +A +AIE++NG LL D +V+VG F +++R+ E+ N
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELRN 184
Query: 199 K-SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
K S+FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+F+N + A
Sbjct: 185 KASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGFVSFDNHEAAQ 244
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVE +NGK + + +VG+AQKK ER+ ELK FEQ +E K QG LYIKNLDD+I
Sbjct: 245 KAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKNLDDTI 304
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDEKL++ FS FGSI+ KVM++ G S+G G + FS+PEEA++A+ EMNG+++ SKPL
Sbjct: 305 DDEKLRKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEEATKAMTEMNGQILGSKPLN 363
Query: 378 VALAQR 383
+AL+Q+
Sbjct: 364 IALSQK 369
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 163/282 (57%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FS G +LS ++ DL +S GY +V F AQKA++
Sbjct: 10 ASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + KS NV++KNL S + L + F +G I
Sbjct: 70 TMNFDMIKGKSIR----LMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKIL 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G SK + FV+F+N A RA+E +NGK D + +VG+ + + +RE EL++
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELRN 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN D +DDE+L+++FS +G S KVM DPSG S+G GF
Sbjct: 185 K--------ASEF--TNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGF 234
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F E A +A+ EMNGK + + ++V AQ+K +R+A L+
Sbjct: 235 VSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELK 276
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/368 (51%), Positives = 269/368 (73%), Gaps = 2/368 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVGDL+ V++ +L D+F+ MG +VSVR+CRD + +SL Y YVNF + +A++AL
Sbjct: 30 ALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALAC 89
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN T L GKP+R+M+SHRDP RK+G N+F+KNLD +I+ +L D F FGNILSCKVA
Sbjct: 90 LNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVA 149
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+ NG+SK +GFVQFD+++SA A+ LN +L+ K+++V F++K ER ++KFTN
Sbjct: 150 EE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTN 208
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VYVKNL E TE+ ++ F E+G + + V+M+DG+GKS+ FGFVNFE+ D+A +AVEALN
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN 268
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G K+ +VG+AQKK+ER+ LKH+ E + K + +NLY+KNLD S+DD+KL++
Sbjct: 269 GAMLGSKKLFVGRAQKKAERQELLKHEKEM-VNCNIGKEKASNLYVKNLDASVDDDKLQE 327
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS G ITS KVMR SG+S+G GFV FST EEA +AL +NG ++ + LY+A+AQRK
Sbjct: 328 HFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRK 387
Query: 385 EDRRARLQ 392
EDR+ L+
Sbjct: 388 EDRQRVLR 395
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 158/283 (55%), Gaps = 17/283 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L+V +L+ ++ + L D+F + G ++S +V + +S +G+V F + A A
Sbjct: 115 GLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEE--NGKSKCFGFVQFDSDDSATAA 172
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
L LN T L+GK + V R + ++ N+++KNL + + + D FS FG
Sbjct: 173 LNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGK 232
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER---- 193
+ + + D NG+S+G+GFV F++ + A+KA+E LNG +L K+++VG +K ER
Sbjct: 233 VGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELL 292
Query: 194 -------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
+ I K K +N+YVKNL S ++ LQ+ F G ITSA VMR G SK FG
Sbjct: 293 KHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFG 352
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
FV F S++A +A+ LNG + Y+ AQ+K +R+ L+
Sbjct: 353 FVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQRVLR 395
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A LY+ +LD + + +L +FS G + S ++ RD SG S +V F P +AS+AL
Sbjct: 29 AALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALA 88
Query: 365 EMNGKMVVSKPLYVALAQR 383
+N ++ KP+ + + R
Sbjct: 89 CLNHTKLMGKPMRIMWSHR 107
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/364 (52%), Positives = 266/364 (73%), Gaps = 2/364 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVGDL+ V++ +L D+F+ MG +VSVR+CRD + +SL Y YVNF +A++AL
Sbjct: 30 ALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALAC 89
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN T L GKP+R+M+SHRDP RK+G N+F+KNLD +I+ +L D F FGNILSCKVA
Sbjct: 90 LNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVA 149
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+ NG+SK +GFVQFD+++SA A+ LN +L+ K+++V F++K ER ++KFTN
Sbjct: 150 EE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTN 208
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VYVKNL E TE+ ++ F E+G + + V+M+DG+GKS+ FGFVNFE+ D+A +AVEALN
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN 268
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G K+ +VG+AQKK+ER+ LKH+ E + K + +NLY+KNLD S+DD+KL++
Sbjct: 269 GAMLGSKKLFVGRAQKKAERQELLKHEKEM-VNCNIGKEKASNLYVKNLDASVDDDKLQE 327
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS G ITS KVMR SG+S+G GFV FST EEA +AL +NG ++ + LY+A+AQRK
Sbjct: 328 HFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRK 387
Query: 385 EDRR 388
EDR+
Sbjct: 388 EDRQ 391
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 156/279 (55%), Gaps = 17/279 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L+V +L+ ++ + L D+F + G ++S +V + +S +G+V F + A A
Sbjct: 115 GLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEE--NGKSKCFGFVQFDSDDSATAA 172
Query: 82 LEMLNFTPLNGKPIRVM----YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
L LN T L+GK + V R + ++ N+++KNL + + + D FS FG
Sbjct: 173 LNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGK 232
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER---- 193
+ + + D NG+S+G+GFV F++ + A+KA+E LNG +L K+++VG +K ER
Sbjct: 233 VGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELL 292
Query: 194 -------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
+ I K K +N+YVKNL S ++ LQ+ F G ITSA VMR G SK FG
Sbjct: 293 KHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFG 352
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
FV F S++A +A+ LNG + Y+ AQ+K +R+
Sbjct: 353 FVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQ 391
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 155/280 (55%), Gaps = 18/280 (6%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ +LD + L D FS G ++S ++ D L+G+S Y +V F A KA+ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALACL 90
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N L K + + RD K+ N++VKNL S LQ F ++G I S
Sbjct: 91 NHTKLMGKPMRI----MWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSC 146
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V + +GKSKCFGFV F++ D A A+ ALN D K+ +V K KK ER
Sbjct: 147 KVAEE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCER-------- 197
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
KEA+++ + N+Y+KNL + + ++ ++ FS FG + + +M+D +G SRG GFV
Sbjct: 198 ----KEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVN 253
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F +P+EA +A+ +NG M+ SK L+V AQ+K +R+ L+
Sbjct: 254 FESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLK 293
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A LY+ +LD + + +L +FS G + S ++ RD SG S +V F P +AS+AL
Sbjct: 29 AALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALA 88
Query: 365 EMNGKMVVSKPLYVALAQR 383
+N ++ KP+ + + R
Sbjct: 89 CLNHTKLMGKPMRIMWSHR 107
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/327 (55%), Positives = 251/327 (76%), Gaps = 3/327 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
ANAN + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN+++A
Sbjct: 46 ANANP-NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 104
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ RALE LN+T + GKP R+M+S RDP+LRK+G GNIFIKNLD AID+KALHDTF+AF
Sbjct: 105 NDGERALEELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAF 164
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+GYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R +
Sbjct: 165 GNILSCKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDRMS 224
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+YVKN+ TT+++ ++ F +YG ITSA + RD +GK + FGFVN+
Sbjct: 225 KFEEMKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRH 284
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ LN F ++ YVG+AQKK ERE EL+ Q+E +E + K+ G NLY+KNL
Sbjct: 285 EDANKAVDELNDIDFKSQKLYVGRAQKKHEREEELRRQYEAQRQEKSAKYMGVNLYVKNL 344
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD 340
D IDDE+L+++F +GSITS KVMRD
Sbjct: 345 ADDIDDEELRKVFEAYGSITSAKVMRD 371
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 157/290 (54%), Gaps = 15/290 (5%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++
Sbjct: 45 PANANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 104
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E+LN L+ K + +RD + K+ N+++KNL + + L +
Sbjct: 105 NDGERALEELNYTLIKGKPCRI----MWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDT 160
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G S+ +GFV++E ++ A A++++NG ++K+ +VG K
Sbjct: 161 FAAFGNILSCKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKK 220
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
+R +FE+ K N+Y+KN+D D++ ++LF +G ITS + RD
Sbjct: 221 DR----MSKFEEM------KANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQE 270
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G RG GFV + E+A++A+ E+N S+ LYV AQ+K +R L+
Sbjct: 271 GKVRGFGFVNYIRHEDANKAVDELNDIDFKSQKLYVGRAQKKHEREEELR 320
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 162/343 (47%), Gaps = 78/343 (22%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+A + + L+D F G ++S +V +D S S GYG+V++ A+ A A
Sbjct: 139 GHGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDESGG-SRGYGFVHYETAEAANAA 197
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSL--------RKSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +N LN K +V H P K+ NI++KN+D + F
Sbjct: 198 IKSVNGMLLNEK--KVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDTETTDDEFRELFE 255
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+G I S +A D G+ +G+GFV + E A KA+++LN + +++YVG +K ER
Sbjct: 256 KYGEITSASLARDQEGKVRGFGFVNYIRHEDANKAVDELNDIDFKSQKLYVGRAQKKHER 315
Query: 194 DTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR----- 236
+ E+ + +K+ N+YVKNL++ +E+L+K F YG+ITSA VMR
Sbjct: 316 EEELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDEELRKVFEAYGSITSAKVMRDTTPA 375
Query: 237 ------------DGD--------------------------------------GKSKCFG 246
DG+ GKSK FG
Sbjct: 376 DQVENAEEEKKEDGENEAESSEEKKEDEKKEDGTEELTKKLDTVTIGGEKKVLGKSKGFG 435
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
FV F N D+A +AV LN K K YV AQ+K R+ +L+
Sbjct: 436 FVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQLE 478
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 42/53 (79%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P+EA++A+ E+N KM+ KPLYVALAQRKE R+++L+ +
Sbjct: 429 GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQLEASI 481
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ +LN +++ K +YV RK+ R +++ S
Sbjct: 429 GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQLEAS 480
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/309 (61%), Positives = 244/309 (78%), Gaps = 4/309 (1%)
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLD++ID+KAL+DTFSAFGNILSCKV
Sbjct: 1 MNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 60
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ K+K F
Sbjct: 61 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 119
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E + +L++ F ++G S VMRD GKSK FGFV++E +DA +AVE
Sbjct: 120 TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 180 MNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 239
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 240 RREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 298
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 299 RKEERKAHL 307
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 26 GVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 83
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D L + FS F
Sbjct: 84 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQF 143
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 144 GKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 203
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L++ F +G+ITSA VM + DG+S
Sbjct: 204 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE-DGRS 261
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 262 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 315
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 125/201 (62%), Gaps = 11/201 (5%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS NV++KNL ES + L +F +G I S V+ D +G SK + FV+FE
Sbjct: 17 QRDPSLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 75
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A +A+E +NG +D++ +VG+ + + ERE EL + A +F N+YIK
Sbjct: 76 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK--------AKEF--TNVYIK 125
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N + +DD LK+LFS FG S KVMRD SG S+G GFV++ E+A++A+ EMNGK +
Sbjct: 126 NFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 185
Query: 372 VSKPLYVALAQRKEDRRARLQ 392
K ++V AQ+K +R+A L+
Sbjct: 186 SGKAIFVGRAQKKVERQAELK 206
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/373 (52%), Positives = 259/373 (69%), Gaps = 36/373 (9%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ TSLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRS GY YVNF + ++A R
Sbjct: 8 YPMTSLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQHPKDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF +NGK +R+M+S RDPSLRKSG
Sbjct: 68 ALDTMNFDVINGKSVRIMWSQRDPSLRKSG------------------------------ 97
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
V D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 98 --VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFVGRFKSRKEREAELGAR 154
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVYVKN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 155 AKEFTNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDERGKSKGFGFVSFERGEDAQK 214
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ LNGK+ K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+K LDD ID
Sbjct: 215 AVDELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGLNLYVKYLDDYID 274
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNGK+V +KPLYV
Sbjct: 275 DERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYV 333
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 334 ALAQRKEERQAHL 346
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 150/291 (51%), Gaps = 48/291 (16%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F +
Sbjct: 2 NPSTPSYPMTSLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A++A++ +N ++N K V + +RD + KS
Sbjct: 62 PKDAERALDTMNFDVINGKSVRIMW----SQRDPSLRKSG-------------------- 97
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 98 ------------VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFVGRFKSR 144
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+Y+KN + +DDE LK LF FG S KVM D
Sbjct: 145 KEREAELGAR--------AKEF--TNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDE 194
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G S+G GFV+F E+A +A+ E+NGK + K +YV AQ+K +R+ L+
Sbjct: 195 RGKSKGFGFVSFERGEDAQKAVDELNGKELSGKQIYVGRAQKKVERQTELK 245
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 107/201 (53%), Gaps = 22/201 (10%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++YV + ++ D L DLF + G +SV+V D +S G+G+V+F
Sbjct: 152 GARAKEF--TNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTD-ERGKSKGFGFVSFER 208
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ LN L+GK I V + + D R G N+++K
Sbjct: 209 GEDAQKAVDELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGL-NLYVK 267
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
LD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 268 YLDDYIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGKIV 326
Query: 178 NDKQVYVGHFLRKQERDTEIN 198
K +YV RK+ER +
Sbjct: 327 ATKPLYVALAQRKEERQAHLT 347
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M + + +LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSTPSYPMTSLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVC 394
P++A RAL MN ++ K + + +QR R VC
Sbjct: 61 HPKDAERALDTMNFDVINGKSVRIMWSQRDPSLRKSGVVC 100
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/369 (51%), Positives = 269/369 (72%), Gaps = 2/369 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+LYVGDL+ V++ +L D+F+ MG +VSVR+CRD + +SL Y YVNF + +A++AL
Sbjct: 29 AALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALA 88
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN T L GKP+R+M+SHRDP RK+G N+F+KNLD +I+ +L D F FGNILSCKV
Sbjct: 89 CLNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKV 148
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
A + NG+SK +GFVQFD+++SA A+ LN +L+ K+++V F++K ER ++KFT
Sbjct: 149 AEE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFT 207
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL E TE+ ++ F E+G + + V+M+DG+GKS+ FGFVNFE+ D+A +AVEAL
Sbjct: 208 NVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NG K+ +VG+AQKK+ER+ LKH+ E + K + +NLY+KNLD S+DD+KL+
Sbjct: 268 NGAMLGSKKLFVGRAQKKAERQELLKHEKEM-VNCNIGKEKASNLYVKNLDASVDDDKLQ 326
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+ FS G ITS KVMR SG+S+G GFV FST EEA +AL +NG ++ + LY+A+AQR
Sbjct: 327 EHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQR 386
Query: 384 KEDRRARLQ 392
KEDR+ L+
Sbjct: 387 KEDRQRVLR 395
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 158/283 (55%), Gaps = 17/283 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L+V +L+ ++ + L D+F + G ++S +V + +S +G+V F + A A
Sbjct: 115 GLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEE--NGKSKCFGFVQFDSDDSATAA 172
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
L LN T L+GK + V R + ++ N+++KNL + + + D FS FG
Sbjct: 173 LNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGK 232
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER---- 193
+ + + D NG+S+G+GFV F++ + A+KA+E LNG +L K+++VG +K ER
Sbjct: 233 VGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELL 292
Query: 194 -------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
+ I K K +N+YVKNL S ++ LQ+ F G ITSA VMR G SK FG
Sbjct: 293 KHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFG 352
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
FV F S++A +A+ LNG + Y+ AQ+K +R+ L+
Sbjct: 353 FVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQRVLR 395
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/379 (50%), Positives = 258/379 (68%), Gaps = 36/379 (9%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL VT++ L++ F+ G ++S+RVCRD+ T RSLGY YVNF +A R
Sbjct: 8 YPMASLYVGDLHPYVTEAMLFEKFSPAGPILSIRVCRDMITHRSLGYAYVNFQQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSG------------------------------ 97
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
V D NG KGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 98 --VVCDENG-PKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGPFKSRKEREAELGAR 154
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 155 AKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 214
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD ID
Sbjct: 215 AVDVMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 274
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 275 DERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Query: 379 ALAQRKEDRRARLQVCLLQ 397
ALAQRKE+R+A L +Q
Sbjct: 334 ALAQRKEERQAHLTNLYMQ 352
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 119/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 152 GARAKEF--TNVYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 208
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++++N LNGK I V + + D R G N+++K
Sbjct: 209 HEDAQKAVDVMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 267
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 268 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 326
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN+Y++ ++
Sbjct: 327 ATKPLYVALAQRKEER-----QAHLTNLYMQRMA 355
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M + + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSTPSYPMASLYVGDLHPYVTEAMLFEKFSPAGPILSIRVCRDMITHRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVC 394
P +A RAL MN ++ KP+ + +QR R VC
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVVC 100
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/367 (52%), Positives = 267/367 (72%), Gaps = 4/367 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 64 AQKALDTMNFDTIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G S+GY FV F N+ +A +AIE++NG LL D +++VG F +Q+R+ E+
Sbjct: 124 ILSSKVMSDDQG-SRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDREAEL 182
Query: 198 -NKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK+ +FTN+Y+KN + ++ L++ F +YG S VM D GKSK FGFV+F + +
Sbjct: 183 QNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGFVSFYSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + + +VG+AQKK+ER+ ELK FEQ +E + QG LYIKNLDD
Sbjct: 243 AQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQQKQERFRRCQGVKLYIKNLDD 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FS FGSI+ KVM++ G S+G G + FS+PEEA+RA+ EMNG+++ SKP
Sbjct: 303 TIDDEKLRREFSSFGSISRVKVMKEE-GRSKGFGLICFSSPEEATRAMTEMNGRILGSKP 361
Query: 376 LYVALAQ 382
L +ALAQ
Sbjct: 362 LNIALAQ 368
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 162/282 (57%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FS G +LS ++ DL +S GY +V F AQKA++
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N + K + L +RD + KS NV++KNL +S + L + F +G I
Sbjct: 70 TMNFDTIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G S+ + FV+F+N A RA+E +NG D +VG+ + + +RE EL++
Sbjct: 126 SSKVMSDDQG-SRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDREAELQN 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A++F N+YIKN D +DD++L+++FS +G S KVM D +G S+G GF
Sbjct: 185 K--------ANEF--TNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGF 234
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F + E A +A+ EMNGK + + L+V AQ+K +R+A L+
Sbjct: 235 VSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQAELK 276
>gi|147838149|emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 201/396 (50%), Positives = 271/396 (68%), Gaps = 20/396 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
SLYVGDL ++TD L+D F++ + SVR+CRD S+ RSL YGYVNF + Q+A+ A
Sbjct: 10 APASLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHA 69
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIK--------------------NLDK 121
+E N T L+GK IRVM+SHRDP R+SG GN+F+K NL
Sbjct: 70 IEAKNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKVYLFAVTSIIDAELYFLVCLNLSD 129
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+ID+ L F FGNILSCKV +G+SKGYGFVQF++EE A AIEKLNG +++ KQ
Sbjct: 130 SIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQ 189
Query: 182 VYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+Y G F+RK +R +K+TN+Y+KNL TEE L++ F E+G I S V+ +D +G
Sbjct: 190 IYAGKFVRKTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGM 249
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
S+ FGFVNFE+ +DA RA+EALNG + K YV +AQKK+ERE L+ QFE+ E
Sbjct: 250 SRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQIL 309
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361
K++G+N+Y+KN+DD+++D+ L++ FS G ITS K+MRD GIS+G GFV FSTP+EAS+
Sbjct: 310 KYRGSNVYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASK 369
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
A+ +G M KPLYVA+AQRKEDR+A+LQ+ Q
Sbjct: 370 AVNTFHGYMFHRKPLYVAIAQRKEDRQAQLQLHYAQ 405
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 162/285 (56%), Gaps = 21/285 (7%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSNAQEAARALEMLNF 87
+L ++ + +L +F + G ++S C+ + T +S GYG+V F + + A A+E LN
Sbjct: 126 NLSDSIDNVRLQAMFQKFGNILS---CKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNG 182
Query: 88 TPLNGKPIRV--MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
++GK I D L A N++IKNLD + +AL + F FG I S +
Sbjct: 183 FIIDGKQIYAGKFVRKTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVI 242
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG---------HFLRKQ--- 191
+ D NG S+G+GFV F++ E A++A+E LNG+ L K +YV LR+Q
Sbjct: 243 SKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEE 302
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+R+ +I K + +NVYVKN+ ++ ++DL++ F G ITSA +MRD G SK FGFV F
Sbjct: 303 KRNEQILKYRGSNVYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFS 362
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
D+A++AV +G F K YV AQ+K +R+ +L+ + Q M
Sbjct: 363 TPDEASKAVNTFHGYMFHRKPLYVAIAQRKEDRQAQLQLHYAQRM 407
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/368 (52%), Positives = 270/368 (73%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 64 AQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G S+GY FV F N+ +A +AIE++NG LL D +++VG F +++R+ E+
Sbjct: 124 ILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAEL 182
Query: 198 -NKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK+ +FTNVY+KN + +E L++ F +YG S VMRD GKSK FGFV+F++ +
Sbjct: 183 QNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + + +VG+AQKK+ER+ ELK FEQ +E + QG LYIKNLD+
Sbjct: 243 AKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDE 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FS FGSI+ KVM++ G S+G G + FS+PEEA++A+ EMNG+++ SKP
Sbjct: 303 TIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSPEEATKAMTEMNGRILGSKP 361
Query: 376 LYVALAQR 383
L +ALAQ+
Sbjct: 362 LNIALAQK 369
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 166/289 (57%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FS G +LS ++ DL +S GY +V F AQKA++
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N L+ K + L +RD + KS NV++KNL +S + L + F +G I
Sbjct: 70 TMNFDLIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G S+ + FV+F+N A RA+E +NG D +VG+ + + +RE EL++
Sbjct: 126 SSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A++F N+YIKN D +DDE+LK++FS +G S KVMRD SG S+G GF
Sbjct: 185 K--------ANEF--TNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGF 234
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
V+F + E A +A+ EMNGK + + L+V AQ+K +R+A L+ Q +
Sbjct: 235 VSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLK 283
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/371 (50%), Positives = 264/371 (71%), Gaps = 8/371 (2%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V ++ L + F+ +G+V+S+RVCRD TRRSLGY YVNF ++A +ALE
Sbjct: 17 SLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALET 76
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF ++G+PIR+M+S R PS + AGN+F+KNL+ +++ KAL++ FS FGNI+SCK+A
Sbjct: 77 MNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLA 136
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--F 202
D +SKGYGFVQF+ EE+A+KAI+ NG++ K++YVG F + ER + ++ F
Sbjct: 137 VDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCF 196
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNV+VKN ++ +E LQ+ F ++G I S V DGDGK FGFV FEN DDA +AV+
Sbjct: 197 TNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKD 256
Query: 263 LNGKKF--DDKEWYVGKAQKKSER--ELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
+ D++ YV + QKK ER EL+ K+Q E+N E A +++GANLY+KNLDD+ID
Sbjct: 257 MQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKN--ERAKRYEGANLYLKNLDDAID 314
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D+ L++ F +G++ S KVMR G S+G GFV F P+EA +A+ M GKMV +KPLYV
Sbjct: 315 DDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYV 374
Query: 379 ALAQRKEDRRA 389
++AQRKEDR+A
Sbjct: 375 SMAQRKEDRKA 385
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 107/331 (32%), Positives = 179/331 (54%), Gaps = 30/331 (9%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L +V LY+ F+ G +VS ++ D ++ S GYG+V F + A +A++
Sbjct: 106 VFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSK-SKGYGFVQFETEEAARKAIDGT 164
Query: 86 NFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAFGNIL 139
N GK I V S R +++ N+F+KN +D + L F+ FG I+
Sbjct: 165 NGVIFEGKRIYVGRFQSRSERSEQAKRTTNCFTNVFVKNFADILDKEKLQQLFAKFGKIV 224
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLRKQERDTEI 197
SC V+ D +G+ G+GFV F+N + A+KA++ + L +D+++YV F +K ER E+
Sbjct: 225 SCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAEL 284
Query: 198 NKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
++ + N+Y+KNL ++ ++ L++SFGEYG + SA VMR DG+SK F
Sbjct: 285 DRKYQLEKNERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKGF 344
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ---NMKEAADK 302
GFV F+ D+A +A+ A+ GK K YV AQ+K +R+ + Q+ Q +++ A
Sbjct: 345 GFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMAQRKEDRKAFIASQYMQRIASIRMQATS 404
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
F Y+ D ++ LF+ +G T
Sbjct: 405 FGSGMTYMS------DSTVVQPLFACYGRGT 429
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAAR 258
+K ++YV +L E L + F G + S V RD +S + +VNFE +DA +
Sbjct: 13 AKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQ 72
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
A+E +N + + +Q++ + + N+++KNL+ S++
Sbjct: 73 ALETMNFDIVHGRPIRIMWSQRRP----------------STSRVAAGNVFVKNLNGSVN 116
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
+ L FS FG+I SCK+ D S+G GFV F T E A +A+ NG + K +YV
Sbjct: 117 SKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYV 176
Query: 379 ALAQRKEDR 387
Q + +R
Sbjct: 177 GRFQSRSER 185
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ +LY+ +L+ + D L F + G V+S +V R RS G+G+V F E
Sbjct: 296 AKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRS-DDGRSKGFGFVCFDKPDE 354
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A +A+ + + KP+ V + R
Sbjct: 355 AVKAMTAMKGKMVCTKPLYVSMAQR 379
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/371 (50%), Positives = 264/371 (71%), Gaps = 8/371 (2%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V ++ L + F+ +G+V+S+RVCRD TRRSLGY YVNF ++A +ALE
Sbjct: 17 SLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALET 76
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF ++G+PIR+M+S R PS + AGN+F+KNL+ +++ KAL++ FS FGNI+SCK+A
Sbjct: 77 MNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLA 136
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--F 202
D +SKGYGFVQF+ EE+A+KAI+ NG++ K++YVG F + ER + ++ F
Sbjct: 137 VDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCF 196
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNV+VKN ++ +E LQ+ F ++G I S V DGDGK FGFV FEN DDA +AV+
Sbjct: 197 TNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKD 256
Query: 263 LNGKKF--DDKEWYVGKAQKKSER--ELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
+ D++ YV + QKK ER EL+ K+Q E+N E A +++GANLY+KNLDD+ID
Sbjct: 257 MQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKN--ERAKRYEGANLYLKNLDDAID 314
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D+ L++ F +G++ S KVMR G S+G GFV F P+EA +A+ M GKMV +KPLYV
Sbjct: 315 DDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYV 374
Query: 379 ALAQRKEDRRA 389
++AQRKEDR+A
Sbjct: 375 SMAQRKEDRKA 385
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 180/332 (54%), Gaps = 30/332 (9%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+++V +L +V LY+ F+ G +VS ++ D ++ S GYG+V F + A +A++
Sbjct: 105 NVFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSK-SKGYGFVQFETEEAARKAIDG 163
Query: 85 LNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAFGNI 138
N GK I V S R +++ N+F+KN +D + L F+ FG I
Sbjct: 164 TNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCFTNVFVKNFADILDKEKLQQLFAKFGKI 223
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLRKQERDTE 196
+SC V+ D +G+ G+GFV F+N + A+KA++ + L +D+++YV F +K ER E
Sbjct: 224 VSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAE 283
Query: 197 INKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+++ + N+Y+KNL ++ ++ L++SFGEYG + SA VMR DG+SK
Sbjct: 284 LDRKYQLEKNERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKG 343
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ---NMKEAAD 301
FGFV F+ D+A +A+ A+ GK K YV AQ+K +R+ + Q+ Q +++ A
Sbjct: 344 FGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMAQRKEDRKAFIASQYMQRIASIRMQAT 403
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
F Y+ D ++ LF+ +G T
Sbjct: 404 SFGSGMTYMS------DSTVVQPLFACYGRGT 429
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAAR 258
+K ++YV +L E L + F G + S V RD +S + +VNFE +DA +
Sbjct: 13 AKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQ 72
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
A+E +N + + +Q++ + + N+++KNL+ S++
Sbjct: 73 ALETMNFDIVHGRPIRIMWSQRRP----------------STSRVAAGNVFVKNLNGSVN 116
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
+ L FS FG+I SCK+ D S+G GFV F T E A +A+ NG + K +YV
Sbjct: 117 SKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYV 176
Query: 379 ALAQRKEDR 387
Q + +R
Sbjct: 177 GRFQSRSER 185
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ +LY+ +L+ + D L F + G V+S +V R RS G+G+V F E
Sbjct: 296 AKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRS-DDGRSKGFGFVCFDKPDE 354
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A +A+ + + KP+ V + R
Sbjct: 355 AVKAMTAMKGKMVCTKPLYVSMAQR 379
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/318 (56%), Positives = 245/318 (77%), Gaps = 2/318 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++++++ +AL
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 107 EELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCK 166
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K+ER ++ K+
Sbjct: 167 VAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKA 226
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ T+ED ++ F ++G ITSA + RD GKS+ FGFVN+ + AA AV
Sbjct: 227 NFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAV 286
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN +F ++ YVG+AQKK ERE EL+ Q+E E K+QG NLYIKNL+D +DDE
Sbjct: 287 DHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDE 346
Query: 321 KLKQLFSPFGSITSCKVM 338
KL+ +F+PFG+ITS KV+
Sbjct: 347 KLRDMFTPFGTITSAKVI 364
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 151/283 (53%), Gaps = 15/283 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++ E +KA+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN ++ K + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K ER
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 218
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+FE+ K N+Y+KN+D + DE ++LF G ITS + RD G SRG G
Sbjct: 219 SKFEEM------KANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFG 272
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
FV + E A+ A+ +N + LYV AQ+K +R L+
Sbjct: 273 FVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELR 315
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 162/341 (47%), Gaps = 76/341 (22%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 134 GQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNA 192
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLR--------KSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +N LN K +V H P K+ NI++KN+D + + + F
Sbjct: 193 IKHVNGMLLNEK--KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFE 250
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
G+I S +A D G+S+G+GFV + E+A A++ LN + +++YVG +K ER
Sbjct: 251 KHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHER 310
Query: 194 DTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSA-VVMRD--- 237
+ E+ K SK+ N+Y+KNL++ +E L+ F +GTITSA V++RD
Sbjct: 311 EEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEK 370
Query: 238 --------------------------------------GD-----------GKSKCFGFV 248
GD GKSK FGFV
Sbjct: 371 KDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFV 430
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
F N D+A +AV +N K + K YV AQ+K R+ +L+
Sbjct: 431 CFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLE 471
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 41/53 (77%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P+EA++A+ EMN KM+ KPLYVALAQRK+ R+ +L+ +
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATI 474
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/368 (51%), Positives = 260/368 (70%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A T+ L+ F+ G V+S+R+CRDL+TR+ LGY YVNF +
Sbjct: 4 AAKYRLASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + G+PIR+M+S RD LR+SG GN+F+KNLD+++D+K L++ FS FG
Sbjct: 64 AQRALDTMNFDVIKGRPIRLMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F ++ +A AIE++NG ++ND+ V+V F +++R+ E+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAPFKPRKDREAEL 182
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTNVY+KN + +E LQ F YG S VM D GKSK FGFV+FE+ +
Sbjct: 183 RSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGFVSFESHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A RAVE +NGK + + +VG+AQKK ER+ ELKH FEQ KE + QG LY+KNLDD
Sbjct: 243 AKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQMKKERIRRCQGVKLYVKNLDD 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
++DDE+L++ FS FGSIT KVM++ G SRG G + FS+PEEA++AL EMNG+++ SK
Sbjct: 303 TVDDEQLRKEFSSFGSITRVKVMKE-EGYSRGFGLICFSSPEEAAKALTEMNGRVLGSKA 361
Query: 376 LYVALAQR 383
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 158/282 (56%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L L FSA G +LS ++ DL Q GY +V F AQ+A++
Sbjct: 10 ASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADAQRALD 69
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ + + L +RD + +S NV+VKNL S + L + F +G I
Sbjct: 70 TMNFDVIKGRPIR----LMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGKIL 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G SK + FV+F++ A A+E +NGK +D+ +V + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAPFKPRKDREAELRS 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN D +DDE+L+ +FS +G S KVM D SG S+G GF
Sbjct: 185 R--------ASEF--TNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGF 234
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F + E A RA+ EMNGK + + ++V AQ+K +R+A L+
Sbjct: 235 VSFESHEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELK 276
>gi|156086682|ref|XP_001610750.1| polyadenylate binding protein [Babesia bovis T2Bo]
gi|154798003|gb|EDO07182.1| polyadenylate binding protein, putative [Babesia bovis]
Length = 585
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 199/374 (53%), Positives = 268/374 (71%), Gaps = 5/374 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F + SLYVG+L VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ N Q+A
Sbjct: 33 FNSASLYVGNLLPEVTEAMLYEVFNGIGPVASIRVCRDSLTRKSLGYAYVNYYNFQDAEA 92
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LN+ + G+P R+M+S RDPSLRKSG GNIF+KNLDKAID KAL+DTFS FG ILS
Sbjct: 93 ALECLNYIEIKGQPARIMWSERDPSLRKSGTGNIFVKNLDKAIDTKALYDTFSHFGTILS 152
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D G SKGYGFV + EESA++AIEK+NGML+ + QV V FLR+ ER + +
Sbjct: 153 CKVAIDSLGNSKGYGFVHYTTEESAKEAIEKVNGMLIGNSQVSVAPFLRRNERTSTVGDV 212
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YV+N ++ TE+DL ++F +YG ITS ++ D G+ F FVNF +++ A A+
Sbjct: 213 -FTNLYVRNFPDTWTEDDLHQTFSKYGEITSLLLKSDDKGRR--FAFVNFVDTNMAKAAM 269
Query: 261 EALNGKKFDDKE--WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
E NG KF+ E V + K+ R LK Q++ N ++ +KF G NLYIKNLDD D
Sbjct: 270 EGENGVKFESVEEPMMVCQHMDKARRYAMLKAQYDSNAQDQRNKFMGVNLYIKNLDDDFD 329
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D+ L+ LF +G++TS KVMRD +G+SRG GFV FS P+EA++A+ M+ K+V +KPLYV
Sbjct: 330 DDGLRDLFKQYGTVTSSKVMRDHNGVSRGFGFVCFSRPDEATKAVAGMHLKLVKNKPLYV 389
Query: 379 ALAQRKEDRRARLQ 392
LA+++E R +R+Q
Sbjct: 390 GLAEKREQRASRMQ 403
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 160/315 (50%), Gaps = 31/315 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
GT +++V +L+ + LYD F+ G ++S +V D S S GYG+V+++ + A A
Sbjct: 122 GTGNIFVKNLDKAIDTKALYDTFSHFGTILSCKVAID-SLGNSKGYGFVHYTTEESAKEA 180
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRK----SGAG----NIFIKNLDKAIDHKALHDTFS 133
+E +N + + V P LR+ S G N++++N LH TFS
Sbjct: 181 IEKVNGMLIGNSQVSVA-----PFLRRNERTSTVGDVFTNLYVRNFPDTWTEDDLHQTFS 235
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN--DKQVYVGHFLRKQ 191
+G I S + +D G+ + FV F + A+ A+E NG+ ++ + V + K
Sbjct: 236 KYGEITSLLLKSDDKGRR--FAFVNFVDTNMAKAAMEGENGVKFESVEEPMMVCQHMDKA 293
Query: 192 ER----------DTEINKSKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R + + ++KF N+Y+KNL + ++ L+ F +YGT+TS+ VMRD +
Sbjct: 294 RRYAMLKAQYDSNAQDQRNKFMGVNLYIKNLDDDFDDDGLRDLFKQYGTVTSSKVMRDHN 353
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN-MKE 298
G S+ FGFV F D+A +AV ++ K +K YVG A+K+ +R ++ + QN M +
Sbjct: 354 GVSRGFGFVCFSRPDEATKAVAGMHLKLVKNKPLYVGLAEKREQRASRMQQRNRQNDMMQ 413
Query: 299 AADKFQGANLYIKNL 313
D+ LY +
Sbjct: 414 YGDRPGYVPLYPPEM 428
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/371 (50%), Positives = 268/371 (72%), Gaps = 4/371 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F + SLYVGDL VT++ LY+ F+ G ++SVRVCRD + RSLGYGYVNF ++A
Sbjct: 16 FPSASLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGH 75
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL +NF L+GKP+R+M+ HRDPSLR+SG GN+F+ +LD +ID+K L+D F+ FG ILS
Sbjct: 76 ALNTMNFDVLHGKPVRIMWCHRDPSLRRSGVGNVFVNHLDASIDNKELYDLFAGFGTILS 135
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--IN 198
CKV +D NG KG+GFV F+ E+A KAI+++NG L+ +++V+VG F R +R+ E
Sbjct: 136 CKVVSDENG-PKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQFKRPNQREEERRAK 194
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVYVKN ++ TT+E L + F +YG ++S +M D GKSK FGF+ FE DA R
Sbjct: 195 MEQFTNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKR 254
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
A+E +NGK+F ++ YV +AQKK ERE EL+ + E+ + K+ G +L++KNL +S D
Sbjct: 255 AIEEVNGKQFGGRKIYVSRAQKKKEREEELQQKLEEIKQNRIAKYHGMSLFVKNLAESTD 314
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE L+++F+PFG++TS KV+ G +G GFV+FS+ EEA +A+ EM+GKM+ ++PLYV
Sbjct: 315 DEHLRKIFAPFGTVTSAKVIVK-GGRRKGFGFVSFSSREEAKKAVEEMHGKMLSARPLYV 373
Query: 379 ALAQRKEDRRA 389
+ A+ K++RRA
Sbjct: 374 SYARYKQERRA 384
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 159/285 (55%), Gaps = 16/285 (5%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P + + ++++ +L + L++ FSA G ILS +V D L+ +S GYG+V F
Sbjct: 11 PGMPGFPSASLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRP 70
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
E A A+ +N +L+ K V + RD + +S NV+V +L S ++L
Sbjct: 71 EDAGHALNTMNFDVLHGKPVRIMWC----HRDPSLRRSGVGNVFVNHLDASIDNKELYDL 126
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +GTI S V+ D +G K GFV+FE + A +A++ +NG +++ +VG+ ++ +
Sbjct: 127 FAGFGTILSCKVVSDENG-PKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQFKRPN 185
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
+RE E + + EQ N+Y+KN D DE L ++FS +G ++S K+M D S
Sbjct: 186 QREEERRAKMEQF----------TNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDS 235
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
G S+G GF+ F +A RA+ E+NGK + +YV+ AQ+K++R
Sbjct: 236 GKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKIYVSRAQKKKER 280
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/382 (51%), Positives = 271/382 (70%), Gaps = 15/382 (3%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F + SLY+GDL V + L+++FN +G V S+RVCRD TRRSLGY YVN+ +A R
Sbjct: 6 FSSASLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAER 65
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NFT + GKP R+M+S RDPS+R+SG GNIF+KNL + ID+K L+DTFS FGNILS
Sbjct: 66 ALDSMNFTEIKGKPCRIMWSQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGNILS 125
Query: 141 CKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
CKV TD G SKGYG+V ++ E+A AIEKL+GML++ K+V VG F+R RD +
Sbjct: 126 CKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVFMR---RDNRPGQ 182
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+ +TNV++KN+ TE+ L++ F +G + SA ++ G S FGFVNF + AA A
Sbjct: 183 ADWTNVFIKNIPFEWTEDKLREEFEGFGEVVSAKP-KEVQG-SLGFGFVNFATHEAAAAA 240
Query: 260 VEALNGKKFDDKE--------WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
V+ +N K+F E +VG+AQKK+ERE EL+ ++E + KFQG NLY+K
Sbjct: 241 VKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAERERELRAKYEAEKIDRIAKFQGVNLYVK 300
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKM 370
NLDD++ D+ L+ FS G+ITS +VM+D +GISRG GFV +STPE+A+RA+ EMNGK+
Sbjct: 301 NLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEMNGKI 360
Query: 371 VVSKPLYVALAQRKEDRRARLQ 392
++ KP++VALAQR++ RRA+L+
Sbjct: 361 ILGKPIFVALAQRRDVRRAQLE 382
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 160/307 (52%), Gaps = 24/307 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L + + QLYD F+ G ++S +V D +T S GYGYV++ + AA A
Sbjct: 95 GVGNIFVKNLHEGIDNKQLYDTFSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAASA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
+E L+ ++GK ++V ++ RD ++ N+FIKN+ L + F FG ++S
Sbjct: 155 IEKLDGMLIDGKEVQVGVFMRRDNRPGQADWTNVFIKNIPFEWTEDKLREEFEGFGEVVS 214
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN--------DKQVYVGHFLRKQE 192
K ++ G S G+GFV F E+A A++++N K ++VG +K E
Sbjct: 215 AK-PKEVQG-SLGFGFVNFATHEAAAAAVKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAE 272
Query: 193 RDTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GD 239
R+ E I K + N+YVKNL ++ T++ L+ F GTITSA VM+D
Sbjct: 273 RERELRAKYEAEKIDRIAKFQGVNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKT 332
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
G S+ FGFV + +DA RAV +NGK K +V AQ++ R +L+ Q Q
Sbjct: 333 GISRGFGFVCYSTPEDATRAVNEMNGKIILGKPIFVALAQRRDVRRAQLEAQHNQGRGNL 392
Query: 300 ADKFQGA 306
GA
Sbjct: 393 PGPMGGA 399
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+F +LYV +L+ VTD L D F+ MG + S RV +DL T S G+G+V +S ++A
Sbjct: 291 KFQGVNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDAT 350
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
RA+ +N + GKPI V + R
Sbjct: 351 RAVNEMNGKIILGKPIFVALAQR 373
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/321 (55%), Positives = 248/321 (77%), Gaps = 3/321 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN+++A + RAL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+A +AI+ +NGMLLN+K+V+VGH + K++R ++ K+
Sbjct: 180 VAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTN+YVKN+ T+++ ++ F +YG ITSA + D + GKS+ FGFVN+ N +DA +A
Sbjct: 240 NFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKA 299
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LN F ++ YVG+AQKK ERE EL+ Q+E +E + K+QG NLY+KNL D +DD
Sbjct: 300 VDELNDSDFHGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDD 359
Query: 320 EKLKQLFSPFGSITSCKVMRD 340
E+L+++F +G+ITS KVMRD
Sbjct: 360 EELRKIFEAYGAITSAKVMRD 380
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/399 (30%), Positives = 200/399 (50%), Gaps = 72/399 (18%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V D S GYG+V++ A+ A++A
Sbjct: 147 GHGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAVD-ELGNSKGYGFVHYETAEAASQA 205
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSL--------RKSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +N LN K +V H P K+ NI++KN++ + + F
Sbjct: 206 IKSVNGMLLNEK--KVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIETEVTDDEFRELFE 263
Query: 134 AFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+G I S +A D G+S+G+GFV + N E A KA+++LN + +++YVG +K E
Sbjct: 264 KYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDELNDSDFHGQKLYVGRAQKKHE 323
Query: 193 RDTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
R+ E+ K +K+ N+YVKNL++ +E+L+K F YG ITSA VMRD
Sbjct: 324 REEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDDEELRKIFEAYGAITSAKVMRDVTP 383
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
K +DD + V+ G+ +DK + ++ E++++
Sbjct: 384 LDKAETDAKENKTDDKEKQVD---GEPTEDKNGEEQEDMEELEKKMDTV----------- 429
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
+I EK KV+ G S+G GFV FS P+EA+
Sbjct: 430 ---------------TIGGEK--------------KVL----GKSKGFGFVCFSNPDEAT 456
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
+A+ E+N KM+ KPLYVALAQRKE R+ +L+ +Q R
Sbjct: 457 KAVTELNQKMIHGKPLYVALAQRKEVRKTQLEAS-IQAR 494
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 17/190 (8%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV L S TE L + F G + S V RD +S + +VN+ +++D RA+E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEE 121
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN + + S+R+ L+ K N++IKNLD +ID++ L
Sbjct: 122 LNYTLIKGRPCRI----MWSQRDPALR------------KTGHGNVFIKNLDGAIDNKAL 165
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
F+ FG+I SCKV D G S+G GFV + T E AS+A+ +NG ++ K ++V
Sbjct: 166 HDTFAAFGNILSCKVAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHI 225
Query: 383 RKEDRRARLQ 392
K+DR ++ +
Sbjct: 226 PKKDRMSKFE 235
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/395 (49%), Positives = 262/395 (66%), Gaps = 24/395 (6%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F + SLYVGDL VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 38 FPSASLYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSITRKSLGYAYVNYHNVNDARR 97
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE L + + GK +R+M+SHRDPSLRKSGAGN+FIKN+D++ID KAL+D FS +G ILS
Sbjct: 98 ALEALKYNEICGKQVRIMWSHRDPSLRKSGAGNVFIKNIDESIDTKALYDAFSPYGQILS 157
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-- 198
CKVATD G+S+GYGFV FD E +A +AI NGM L +K+++V F+R+ ER +
Sbjct: 158 CKVATDETGRSRGYGFVHFDTEANATRAISDANGMQLGNKKIFVAPFVRRSERVSSTKLE 217
Query: 199 ---KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
KFTN+YV+N E+ EE L+++F +G ITS ++ D G+ F F+N+ +
Sbjct: 218 DGVDEKFTNLYVRNFPENWNEEILKENFSPFGEITSMMMKSDPLGRK--FAFINYAENSM 275
Query: 256 AARAVEALNGKKFD----DKEWYVGKAQKKSE-------------RELELKHQFEQNMKE 298
A A+E +NGK F DK G+ KSE R LK +++ E
Sbjct: 276 AKAAIETMNGKDFSIKSGDKSTIEGEDTDKSETKLLVCAHQDRARRHAMLKAKYDSMHAE 335
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358
K+QG NLYIKNLDDSI+D +L++LF FG ITSCKVM D G S G GFV F +PE+
Sbjct: 336 NKSKYQGVNLYIKNLDDSINDAELRELFEGFGLITSCKVMVDEHGASLGFGFVCFVSPED 395
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQV 393
A+ A+ EM+ K+V +KPLYV LA+++E R RLQ+
Sbjct: 396 ATHAVSEMHLKLVHNKPLYVGLAEKREQRLNRLQM 430
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 153/319 (47%), Gaps = 53/319 (16%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +++ ++ LYD F+ GQ++S +V D T RS GYG+V+F A RA
Sbjct: 127 GAGNVFIKNIDESIDTKALYDAFSPYGQILSCKVATD-ETGRSRGYGFVHFDTEANATRA 185
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA--------------GNIFIKNLDKAIDHKA 127
+ N L K I V P +R+S N++++N + + +
Sbjct: 186 ISDANGMQLGNKKIFVA-----PFVRRSERVSSTKLEDGVDEKFTNLYVRNFPENWNEEI 240
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG----MLLNDKQVY 183
L + FS FG I S + +D G+ + F+ + A+ AIE +NG + DK
Sbjct: 241 LKENFSPFGEITSMMMKSDPLGRK--FAFINYAENSMAKAAIETMNGKDFSIKSGDKSTI 298
Query: 184 VG---------------------HFLRKQERDT--EINKSKF--TNVYVKNLSESTTEED 218
G H + K + D+ NKSK+ N+Y+KNL +S + +
Sbjct: 299 EGEDTDKSETKLLVCAHQDRARRHAMLKAKYDSMHAENKSKYQGVNLYIKNLDDSINDAE 358
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L++ F +G ITS VM D G S FGFV F + +DA AV ++ K +K YVG A
Sbjct: 359 LRELFEGFGLITSCKVMVDEHGASLGFGFVCFVSPEDATHAVSEMHLKLVHNKPLYVGLA 418
Query: 279 QKKSER--ELELKHQFEQN 295
+K+ +R L+++++ N
Sbjct: 419 EKREQRLNRLQMRYKVGHN 437
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/373 (50%), Positives = 258/373 (69%), Gaps = 36/373 (9%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F++ G ++S+RVCRD+ TRRS Y YVNF + ++A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLR+SG
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSG------------------------------ 97
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-K 199
V D NG SKGYGFV F+ E+A++AIEK+NG LLND++V+VG F ++ER+ E+ K
Sbjct: 98 --VVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 154
Query: 200 SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+K F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 155 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 214
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 215 AVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 274
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 275 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Query: 379 ALAQRKEDRRARL 391
ALAQRKE+R+A L
Sbjct: 334 ALAQRKEERQAHL 346
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 148/291 (50%), Gaps = 48/291 (16%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A++A++ +N ++ K V + +RD + +S
Sbjct: 62 PKDAERALDTMNFDVIKGKPVRIMW----SQRDPSLRRSG-------------------- 97
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 98 ------------VVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR 144
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 145 KEREAEL----------GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 194
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 195 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELK 245
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 117/213 (54%), Gaps = 25/213 (11%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F ++Y+ + ++ D +L DLF + G +SV+V D S +S G+G+V+F
Sbjct: 152 GAKAKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFER 208
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSH----RDPSLRKS------------GAGNIFIKN 118
++A +A++ +N LNGK I V + R L++ N+++KN
Sbjct: 209 HEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKN 268
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 269 LDDDIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 327
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 328 TKPLYVALAQRKEER-----QAHLTNEYMQRMA 355
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FS G I S +V RD I+R S +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRD--VITRRSSSYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVC 394
F P++A RAL MN ++ KP+ + +QR R VC
Sbjct: 59 FQHPKDAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVVC 100
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/319 (57%), Positives = 247/319 (77%), Gaps = 2/319 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 114 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 173
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+AQ+AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 174 VAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 233
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN+S T+++ ++ F +G +TS+ + R+ DGKS+ FGFVNF + AA+AV
Sbjct: 234 NFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEAAAKAV 293
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K +E YVG+AQKK ERE EL+ +E E A K+QG NLYIKNLDD +DD+
Sbjct: 294 EELNNKDLHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDD 353
Query: 321 KLKQLFSPFGSITSCKVMR 339
KL+ +F+ FG ITS KVMR
Sbjct: 354 KLRIMFAEFGPITSAKVMR 372
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 156/286 (54%), Gaps = 21/286 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G + S +V D + +S GY +V +++ +KA+
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 114 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 169
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D +G SK +GFV++E + A +A++ +NG ++K+ YVG K +R+
Sbjct: 170 LSCKVAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 229
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+Y+KN+ + D++ ++LF G +TS + R+ G SR
Sbjct: 230 EMKANF-------------TNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSR 276
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G GFV F+T E A++A+ E+N K + + LYV AQ+K +R L+
Sbjct: 277 GFGFVNFTTHEAAAKAVEELNNKDLHGQELYVGRAQKKHEREEELR 322
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 38/47 (80%)
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
GFV FS P++A++A+ EMN +M+ KPLYVALAQRK+ R+++L+ +
Sbjct: 430 GFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEASI 476
>gi|385281386|gb|AFI57844.1| polyA binding protein, partial [Cocos nucifera]
Length = 352
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/243 (74%), Positives = 212/243 (87%)
Query: 157 VQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTE 216
+ D EE+A AIEKLNGMLLNDK+V+VG FLRKQ+R+ N +KF NV+VKNLSESTTE
Sbjct: 1 IYVDPEEAAHNAIEKLNGMLLNDKKVFVGPFLRKQDRENTANSTKFNNVFVKNLSESTTE 60
Query: 217 EDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276
++L + FGEYG ITSAVVMR+GDGKSKCFGFVNFE+ + AA+AV+ LNGKKFD KEWYVG
Sbjct: 61 DNLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKEWYVG 120
Query: 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
KAQKKSERE+ELK +FEQ M+EAADK QGANLY+KNLDDSI D+KL++LFS FGSITSCK
Sbjct: 121 KAQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGSITSCK 180
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLL 396
VMRDP+G+SRGSGFVAF +P++AS+AL EMNGKM+ SKPLYVALAQRKEDRRARLQ
Sbjct: 181 VMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQRKEDRRARLQAQFS 240
Query: 397 QCR 399
Q R
Sbjct: 241 QMR 243
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 140/245 (57%), Gaps = 27/245 (11%)
Query: 72 FSNAQEAAR-ALEMLNFTPLNGKPIRVMYSHRDPSLRK---------SGAGNIFIKNLDK 121
+ + +EAA A+E LN LN K + V P LRK + N+F+KNL +
Sbjct: 2 YVDPEEAAHNAIEKLNGMLLNDKKVFV-----GPFLRKQDRENTANSTKFNNVFVKNLSE 56
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+ L + F +GNI S V + +G+SK +GFV F++ E A KA+++LNG + K+
Sbjct: 57 STTEDNLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKE 116
Query: 182 VYVGHFLRKQERDTEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
YVG +K ER+ E+ +K++ N+Y+KNL +S ++ L++ F E+G+I
Sbjct: 117 WYVGKAQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGSI 176
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
TS VMRD +G S+ GFV F++ DDA++A+ +NGK K YV AQ+K +R L+
Sbjct: 177 TSCKVMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQRKEDRRARLQ 236
Query: 290 HQFEQ 294
QF Q
Sbjct: 237 AQFSQ 241
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 108/198 (54%), Gaps = 19/198 (9%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
AN+ +F +++V +L + T+ L ++F + G + S V R+ +S +G+VNF +
Sbjct: 41 ANSTKF--NNVFVKNLSESTTEDNLLEIFGEYGNITSAVVMRE-GDGKSKCFGFVNFEDP 97
Query: 76 QEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR------------KSGAGNIFIKNL 119
+ AA+A++ LN +GK V S R+ L+ K+ N+++KNL
Sbjct: 98 EHAAKAVKELNGKKFDGKEWYVGKAQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNL 157
Query: 120 DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
D +I L + FS FG+I SCKV D NG S+G GFV F + + A KA+ ++NG ++
Sbjct: 158 DDSIGDDKLRELFSEFGSITSCKVMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGS 217
Query: 180 KQVYVGHFLRKQERDTEI 197
K +YV RK++R +
Sbjct: 218 KPLYVALAQRKEDRRARL 235
>gi|419961|pir||JN0573 polyadenylate-binding protein - fruit fly (Drosophila melanogaster)
Length = 598
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 209/368 (56%), Positives = 270/368 (73%), Gaps = 21/368 (5%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V +S L+D F+ G V+ RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVI--RVCRDVITRRSLGYAYVNFQQPADAERALDT 60
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N + KPIR+M+S RDPSLR+SG GN+FIKNLD+A +KA++DTFSAFGNILSCKVA
Sbjct: 61 MNL--VRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRA--NKAIYDTFSAFGNILSCKVA 116
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-FT 203
TD G SKGYGFV EE+A +I+K+NGMLLN K+VYVG F+ ++E++ K+K FT
Sbjct: 117 TDEKGNSKGYGFVH--TEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQE---EKAKLFT 171
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKN +E +E L++ F YG IT VM DGKSK FGFV FE ++ A AV+AL
Sbjct: 172 NVYVKNFTEDFDDEKLKEFFEPYGKITK--VMSKEDGKSKGFGFVAFETTEAAEAAVQAL 229
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NGK + K YV +AQKK+ER+ ELK +FE+ +K+ +F G NLY+KNLDD+IDD++L+
Sbjct: 230 NGKG-EGKSLYVARAQKKAERQQELKRKFEE-LKQKRHEF-GVNLYVKNLDDTIDDDRLR 286
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
FSP+G+ITS KV D G S+G GFV F+ EA+ A+ E+NG++V S LYVALAQR
Sbjct: 287 IAFSPYGNITSAKV--DEEGRSKGFGFVCFNPESEATCAVTELNGRVVGS--LYVALAQR 342
Query: 384 KEDRRARL 391
KE+R+A L
Sbjct: 343 KEERKADL 350
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 152/282 (53%), Gaps = 30/282 (10%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + ++ L D FS+ G ++ +V D + +S GY +V F A++A++
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVI--RVCRDVITRRSLGYAYVNFQQPADAERALD 59
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N L+ +K + + +RD + +S NV++KNL + + + +F +G I
Sbjct: 60 TMN--LVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAN--KAIYDTFSAFGNIL 111
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G SK +GFV+ E + A +++ +NG + K+ YVGK + E+E
Sbjct: 112 SCKVATDEKGNSKGYGFVHTEEA--ANTSIDKVNGMLLNGKKVYVGKFIPRKEQE----- 164
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + DDEKLK+ F P+G IT KVM G S+G GF
Sbjct: 165 -------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKIT--KVMSKEDGKSKGFGF 213
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
VAF T E A A+ +NGK K LYVA AQ+K +R+ L+
Sbjct: 214 VAFETTEAAEAAVQALNGKGE-GKSLYVARAQKKAERQQELK 254
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 154/288 (53%), Gaps = 26/288 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + +YD F+ G ++S +V D S GYG+V+ A A +
Sbjct: 84 GVGNVFIKNLDR--ANKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHTEEA--ANTS 138
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
++ +N LNGK + V ++ + N+++KN + D + L + F +G I
Sbjct: 139 IDKVNGMLLNGKKVYVGKFIPRKEQEEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKI- 197
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
KV + +G+SKG+GFV F+ E+A+ A++ LNG K +YV +K ER E+ K
Sbjct: 198 -TKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKG-EGKSLYVARAQKKAERQQEL-K 254
Query: 200 SKF-----------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
KF N+YVKNL ++ ++ L+ +F YG ITSA V D +G+SK FGFV
Sbjct: 255 RKFEELKQKRHEFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKV--DEEGRSKGFGFV 312
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
F +A AV LNG+ YV AQ+K ER+ +L Q+ ++M
Sbjct: 313 CFNPESEATCAVTELNGRVVGS--LYVALAQRKEERKADLASQYMRHM 358
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/368 (52%), Positives = 267/368 (72%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLD++ID+K L++ FSAFG
Sbjct: 64 AQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D +G S+GY FV F N+ +A +AIE++NG LL D +++VG F +++R+ E
Sbjct: 124 ILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEF 182
Query: 198 -NKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK+ +FTNVY+KN + +E L + F +YG S VM D GKSK FGFV+F++ +
Sbjct: 183 QNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A RAVE +NGK + + +VG+AQKK+ER+ ELK FEQ E + QGA LYIKNLD+
Sbjct: 243 AKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCQGAKLYIKNLDE 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FS FGSI+ KVM++ G S+G G + FS+ EEA++A+ EMNG+++ SKP
Sbjct: 303 TIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTEMNGRILGSKP 361
Query: 376 LYVALAQR 383
L +ALAQ+
Sbjct: 362 LNIALAQK 369
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 162/289 (56%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FSA G +LS ++ DL +S GY +V F AQKA++
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N L+ K + L +RD + KS NV++KNL S + L + F +G I
Sbjct: 70 TMNFDLIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKIL 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G S+ + FV+F+N A RA+E +NG D +VG+ + + +RE E ++
Sbjct: 126 SSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEFQN 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN D +DDE+L ++FS +G S KVM D SG S+G GF
Sbjct: 185 K--------AHEF--TNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
V+F + E A RA+ EMNGK + + L+V AQ+K +R+A L+ Q +
Sbjct: 235 VSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLK 283
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/366 (51%), Positives = 268/366 (73%), Gaps = 4/366 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL +VT++ L+ F+ +G V+S+R+CRDL TR SLGY YVNF + +A
Sbjct: 6 KYRQASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQ 65
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RAL+ +NF + G+ IR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FS FG IL
Sbjct: 66 RALDTMNFDVIQGQSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKIL 125
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-N 198
S KV D G S+GYGFV F N+ +A +AIE++NG+LL D +++VG F +++R+ E+ N
Sbjct: 126 SSKVMCDDQG-SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFVGPFKNRRDREAELQN 184
Query: 199 K-SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
K S+FTN+Y+KN + +E L++ F YG I S VM D GKSK FGFV+F+ + A
Sbjct: 185 KASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAK 244
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RAV+ +NG++ ++ +VG+AQKK+ER+ ELK FEQ +E + + +G +Y+KNLD++I
Sbjct: 245 RAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRVRGTKIYVKNLDETI 304
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D+EKL++ FS FGSI KVM++ G SRG G + FS+PEEA+RA+ EMNG+++ SKP+
Sbjct: 305 DEEKLRKAFSSFGSIIRVKVMQE-EGRSRGFGLICFSSPEEAARAMAEMNGRLLGSKPVN 363
Query: 378 VALAQR 383
+ALAQR
Sbjct: 364 IALAQR 369
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 162/282 (57%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIE 170
++++ +L + L FS G +LS ++ DL + S GY +V F + AQ+A++
Sbjct: 10 ASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQRALD 69
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ + + L +RD + KS NV++KNL +S + L + F +G I
Sbjct: 70 TMNFDVIQGQSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKIL 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G S+ +GFV+F+N A RA+E +NG D +VG + + +RE EL++
Sbjct: 126 SSKVMCDDQG-SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFVGPFKNRRDREAELQN 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN D +DDEKLK+ FS +G I S KVM D SG S+G GF
Sbjct: 185 K--------ASEF--TNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGF 234
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F T E A RA+ +NG+ + + ++V AQ+K +R+A L+
Sbjct: 235 VSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELK 276
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/326 (54%), Positives = 243/326 (74%), Gaps = 3/326 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ+ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMR 339
DDSIDD+KL++ FSP+G ITS K R
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKKRR 327
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 161/289 (55%), Gaps = 20/289 (6%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N +L + + + +RD + KS N+++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL A + N+Y+KNL +D++ L++LFS FG + S KVMRD SG
Sbjct: 179 REAEL----------GARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELK 277
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/320 (56%), Positives = 248/320 (77%), Gaps = 2/320 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 118 EELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 178 VAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 237
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ TE+D ++ F +YG +TS+ + RD +GKS+ FGFVNF + A +AV
Sbjct: 238 NFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAV 297
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNLDD +DD+
Sbjct: 298 DELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDD 357
Query: 321 KLKQLFSPFGSITSCKVMRD 340
KL+++F FGSITS KVMR+
Sbjct: 358 KLREMFKDFGSITSAKVMRE 377
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 153/286 (53%), Gaps = 21/286 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G + S +V D + +S GY +V ++ +KA+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN ++ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 118 EELNYTIIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 173
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D G SK +GFV++E + A++A++ +NG ++K+ YVG K +R+
Sbjct: 174 LSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 233
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+Y+KN+ + ++ +QLF +G +TS + RD G SR
Sbjct: 234 EMKANF-------------TNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSR 280
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G GFV F+T E A +A+ E+N K + LYV AQ+K +R L+
Sbjct: 281 GFGFVNFTTHESAFKAVDELNNKDFHGQDLYVGRAQKKHEREEELR 326
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
G S+G GFV FS P++A++A+ EMN +M KPLYVALAQRK+ R+++L+ +
Sbjct: 434 GKSKGFGFVCFSNPDDATKAVAEMNQRMFNGKPLYVALAQRKDVRKSQLEASI 486
>gi|71033649|ref|XP_766466.1| polyadenylate binding protein [Theileria parva strain Muguga]
gi|68353423|gb|EAN34183.1| polyadenylate binding protein, putative [Theileria parva]
Length = 661
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/367 (51%), Positives = 258/367 (70%), Gaps = 7/367 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F + SLYVGDL+ +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ + Q+A
Sbjct: 24 FSSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAQE 83
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LN+ + G P R+M+S+RDPSLR+SGAGNIF+KNLDK+ID K+L+DTFS FG ILS
Sbjct: 84 ALENLNYIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFGPILS 143
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D +G SK YGFV ++NEESA++AIEK+NGML+ K+V V FLRKQ+R++E
Sbjct: 144 CKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQDRESE---E 200
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YV+N EE L++ +YG ITS ++ D G+ F FVN++ + A V
Sbjct: 201 VFTNLYVRNFPADWDEEALRQFLEKYGEITSMMLKEDSKGRR--FAFVNYKEPEVAKEVV 258
Query: 261 EALNGKKFDD--KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
LN K ++ + V Q K++R+ L+ QF + DK +NLYIKNLDDS D
Sbjct: 259 NTLNDLKLEESSEPLLVCPHQDKAKRQNLLRAQFNNSTMAQEDKRVTSNLYIKNLDDSFD 318
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE L +LF PFG+ITS KVM D + SRG GFV F+ P+EA++A+ M+ K+V KPLYV
Sbjct: 319 DESLGELFKPFGTITSSKVMLDANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGKPLYV 378
Query: 379 ALAQRKE 385
LA++++
Sbjct: 379 GLAEKRD 385
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/367 (52%), Positives = 257/367 (70%), Gaps = 7/367 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F + SLYVGDL+ +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ + Q+A
Sbjct: 24 FSSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEA 83
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LN+ + G P R+M+S+RDPSLR+SGAGNIF+KNLDK+ID K+L+DTFS FG ILS
Sbjct: 84 ALESLNYIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFGPILS 143
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D +G SK YGFV ++NEESA++AIEK+NGML+ K+V V FLRKQ+R+ E
Sbjct: 144 CKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQDREGE---E 200
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YV+N EE L++ +YG ITS +M D K + F FVN++ + A V
Sbjct: 201 VFTNLYVRNFPADWNEEALRQFLEKYGEITS--MMLKEDSKGRRFAFVNYKEPEVAKEVV 258
Query: 261 EALNGKKFDD--KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
LN K D+ + V Q K++R+ L+ QF + DK +NLYIKNLDDS D
Sbjct: 259 NTLNDLKLDESSEPLLVCPHQDKAKRQNLLRAQFNNSSMGQEDKRVTSNLYIKNLDDSFD 318
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE L +LF PFG+ITS KVM D + SRG GFV F+ P+EA++A+ M+ K+V KPLYV
Sbjct: 319 DESLGELFKPFGTITSSKVMLDANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGKPLYV 378
Query: 379 ALAQRKE 385
LA++++
Sbjct: 379 GLAEKRD 385
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/326 (54%), Positives = 242/326 (74%), Gaps = 3/326 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMR 339
DDSIDD+KL++ FSP+G ITS K R
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKKRR 327
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 160/289 (55%), Gaps = 20/289 (6%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N +L + + + +RD + KS N+++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMW----SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD SG
Sbjct: 179 REAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELK 277
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/378 (48%), Positives = 251/378 (66%), Gaps = 36/378 (9%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRK
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKX-------------------------- 96
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 97 -------XXXXXXXXSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 149
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE
Sbjct: 150 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 209
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 210 EDAQXXXXXMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 269
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 270 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 328
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 329 KPLYVALAQRKEERQAHL 346
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 139/291 (47%), Gaps = 48/291 (16%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + K
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKXXXXXX---------------- 101
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 102 -----------------XXXSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 144
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 145 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 194
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A MNGK + K +YV AQ+K +R+ L+
Sbjct: 195 SGKSKGFGFVSFERHEDAQXXXXXMNGKELNGKQIYVGRAQKKVERQTELK 245
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 114/214 (53%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S +S G+G+V+F
Sbjct: 152 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFER 208
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +N LNGK I V + + D R G N+++K
Sbjct: 209 HEDAQXXXXXMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 267
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 268 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 326
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 327 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 355
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/373 (51%), Positives = 268/373 (71%), Gaps = 4/373 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF + +
Sbjct: 197 AAKYRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVAD 256
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FS FG
Sbjct: 257 AQKALDTMNFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGK 316
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL + +V+V F +++R++E+
Sbjct: 317 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGTLLKNCRVFVSRFKSRKDRESEL 375
Query: 198 -NK-SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK S+FTNVY+KN + + L++ F +YGT S VM D GKSK FGFV+F + +
Sbjct: 376 KNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSFASHEA 435
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A AVE +NGK + + +VG+AQKK ER+ ELK FEQ +E + +G LYIKNLDD
Sbjct: 436 AKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCRGVKLYIKNLDD 495
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ F+ FGSI+ KVM++ G S+G G + FS+ EEA +A+ EMNG+++ SKP
Sbjct: 496 TIDDEKLRKEFASFGSISRVKVMQE-EGRSKGFGLICFSSHEEAIKAMTEMNGRILGSKP 554
Query: 376 LYVALAQRKEDRR 388
L +ALAQR E+R+
Sbjct: 555 LNIALAQRNEERK 567
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 164/288 (56%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ DL +S GY +V F + AQKA++
Sbjct: 204 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALDT 263
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + KS NV++KNL +S + L + F +G I S
Sbjct: 264 MNFDVIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGKILS 319
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NG + +V + + + +RE ELK++
Sbjct: 320 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGTLLKNCRVFVSRFKSRKDRESELKNK 378
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN D +DD +LK++FS +G+ S KVM D SG S+G GFV
Sbjct: 379 --------ASEF--TNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFV 428
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
+F++ E A A+ EMNGK + + ++V AQ+K +R+A L+ Q R
Sbjct: 429 SFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLR 476
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 108/194 (55%), Gaps = 20/194 (10%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A++F T++Y+ + ++ D +L ++F++ G +SV+V D S+ +S G+G+V+F++ +
Sbjct: 379 ASEF--TNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTD-SSGKSKGFGFVSFASHEA 435
Query: 78 AARALEMLNFTPLNGKPIRV---------------MYSH-RDPSLRKSGAGNIFIKNLDK 121
A A+E +N +NG+ I V M+ R R+ ++IKNLD
Sbjct: 436 AKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCRGVKLYIKNLDD 495
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
ID + L F++FG+I KV + G+SKG+G + F + E A KA+ ++NG +L K
Sbjct: 496 TIDDEKLRKEFASFGSISRVKVMQE-EGRSKGFGLICFSSHEEAIKAMTEMNGRILGSKP 554
Query: 182 VYVGHFLRKQERDT 195
+ + R +ER T
Sbjct: 555 LNIALAQRNEERKT 568
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/369 (49%), Positives = 259/369 (70%), Gaps = 4/369 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL+A VT+ L+ F+ G V+S+R+CRDL TRRSLGY YVNF +
Sbjct: 142 AAKYRQASLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLAD 201
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF L G+P+R+M+S RD LRKSG GN+FIKNLD+++D KAL + FSAFG
Sbjct: 202 AQRALDTMNFDVLRGRPLRLMWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSAFGK 261
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G S+GY FV F + +A +AIE +NG L +++VG F +Q R+ E+
Sbjct: 262 ILSSKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQAREAEL 320
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTN+Y+KN + L+ F EYG S VM D G+S+ FGFV+FE+ +
Sbjct: 321 RSRAGEFTNLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGFVSFESHEA 380
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A RAVEALNG++ D + +VG+AQ+K+ER+ EL+ FEQ ++ + QGA LY+KNLDD
Sbjct: 381 ARRAVEALNGRQVDGQPLFVGRAQRKAERQAELRRAFEQRQQDGLRRAQGAKLYVKNLDD 440
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
++D+++L++ FS FG+++ K+MR+ G S+G G + FS+ +EA+RAL EMNG+++ SKP
Sbjct: 441 AVDEDRLRREFSGFGAVSRVKIMRE-EGRSKGFGLICFSSADEAARALAEMNGRVLGSKP 499
Query: 376 LYVALAQRK 384
L +ALAQ +
Sbjct: 500 LSIALAQSR 508
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 159/281 (56%), Gaps = 16/281 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +LD + AL FSA G +LS ++ DL +S GY +V F AQ+A++
Sbjct: 149 SLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLADAQRALDT 208
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N +L + + L +RD + KS NV++KNL S ++ L + F +G I S
Sbjct: 209 MNFDVLRGRPLR----LMWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSAFGKILS 264
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ V+ D G S+ + FV+F+ A RA+E +NG + +VG+ Q + RE EL+ +
Sbjct: 265 SKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQAREAELRSR 323
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F NLYIKN +DD +L+ +FS +G S KVM D SG SRG GFV
Sbjct: 324 --------AGEF--TNLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGFV 373
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+F + E A RA+ +NG+ V +PL+V AQRK +R+A L+
Sbjct: 374 SFESHEAARRAVEALNGRQVDGQPLFVGRAQRKAERQAELR 414
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYV +L+ V + +L F+ G V V++ R+ RS G+G + FS+A EAARAL +
Sbjct: 433 LYVKNLDDAVDEDRLRREFSGFGAVSRVKIMREEG--RSKGFGLICFSSADEAARALAEM 490
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSG 110
N L KP+ + + L+ G
Sbjct: 491 NGRVLGSKPLSIALAQSRRCLQPRG 515
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/368 (51%), Positives = 260/368 (70%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTNVY+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E QG LYIKNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A++A+ EMNG+++ SKP
Sbjct: 303 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Query: 376 LYVALAQR 383
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I
Sbjct: 70 TMNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRS 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GF
Sbjct: 185 K--------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
V+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+ Q +
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/368 (51%), Positives = 260/368 (70%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTNVY+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E QG LYIKNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A++A+ EMNG+++ SKP
Sbjct: 303 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Query: 376 LYVALAQR 383
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I
Sbjct: 70 TMNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRS 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GF
Sbjct: 185 K--------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
V+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+ Q +
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/368 (51%), Positives = 260/368 (70%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 122 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTNVY+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 241 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E QG LYIKNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 360
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A++A+ EMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 376 LYVALAQR 383
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 160/282 (56%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I
Sbjct: 128 TMNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 183
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+
Sbjct: 184 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRS 242
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GF
Sbjct: 243 K--------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 292
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+
Sbjct: 293 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELK 334
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/368 (51%), Positives = 260/368 (70%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 122 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTN+Y+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 241 RSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E QG LYIKNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 360
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A++A+ EMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 376 LYVALAQR 383
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 160/282 (56%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I
Sbjct: 128 TMNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 183
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+
Sbjct: 184 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRS 242
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GF
Sbjct: 243 K--------ASEF--TNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 292
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+
Sbjct: 293 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELK 334
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/368 (51%), Positives = 260/368 (70%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 61 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 120
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 121 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 180
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 181 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 239
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTN+Y+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 240 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 299
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E QG LYIKNLDD
Sbjct: 300 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 359
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A++A+ EMNG+++ SKP
Sbjct: 360 TIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 418
Query: 376 LYVALAQR 383
L +ALAQR
Sbjct: 419 LSIALAQR 426
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 160/282 (56%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 67 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 126
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I
Sbjct: 127 TMNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 182
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+
Sbjct: 183 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRS 241
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GF
Sbjct: 242 K--------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 291
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+
Sbjct: 292 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELK 333
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/378 (49%), Positives = 256/378 (67%), Gaps = 4/378 (1%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G NA +LYVGDL + + L+D F+++G V SVRVCRD +T SL YGYVN+ +
Sbjct: 96 GTNAT---VPALYVGDLHEDAQEEHLFDAFSKVGAVTSVRVCRDTATSSSLRYGYVNYFS 152
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+A ALE +N + + KPIRVM+S+RDP R+SG GN+F+KNL+ ID+ L + FS
Sbjct: 153 QADAMTALEKMNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDHIDNVILQELFSK 212
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG+ILSCKVA + +G S+GYGFVQF +ESA AIE LN +Q++V HF++K ER
Sbjct: 213 FGDILSCKVARNDDGTSRGYGFVQFAAQESADIAIENLNNSHFEGRQLHVAHFIKKSERS 272
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
N K+TN+Y+KNL + TEE ++ F ++G + S +M+ DG SK FGFV+F++ D
Sbjct: 273 AN-NDDKYTNLYMKNLDDDMTEELIKLKFSQFGPLISVKIMKRDDGTSKGFGFVSFKSPD 331
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A +A EA+NG K YV +AQKK+ER+ L+ E+ E K G+N+YIKN+
Sbjct: 332 SAKKAKEAMNGIPLGSKSLYVARAQKKAERKQYLQLLHEEKRNEILTKSNGSNVYIKNIS 391
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D +DDE L++ F FG+ITS K+MRD GIS+G GFV ++TP+EA A+ M G M K
Sbjct: 392 DRVDDETLRERFDEFGNITSVKIMRDDKGISKGFGFVCYNTPDEAKCAVSSMRGVMFYDK 451
Query: 375 PLYVALAQRKEDRRARLQ 392
PLYVA+AQRKEDR+ARL+
Sbjct: 452 PLYVAIAQRKEDRKARLE 469
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 167/296 (56%), Gaps = 20/296 (6%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR-DLSTRRSLGYGYVNFSN 74
+A + G +++V +L ++ + L +LF++ G ++S +V R D T R GYG+V F+
Sbjct: 182 PDARRSGVGNVFVKNLNDHIDNVILQELFSKFGDILSCKVARNDDGTSR--GYGFVQFAA 239
Query: 75 AQEAARALEMLNFTPLNGKPIRVMY----SHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
+ A A+E LN + G+ + V + S R + N+++KNLD + + +
Sbjct: 240 QESADIAIENLNNSHFEGRQLHVAHFIKKSERSAN-NDDKYTNLYMKNLDDDMTEELIKL 298
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG----- 185
FS FG ++S K+ +G SKG+GFV F + +SA+KA E +NG+ L K +YV
Sbjct: 299 KFSQFGPLISVKIMKRDDGTSKGFGFVSFKSPDSAKKAKEAMNGIPLGSKSLYVARAQKK 358
Query: 186 -------HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
L +++R+ + KS +NVY+KN+S+ +E L++ F E+G ITS +MRD
Sbjct: 359 AERKQYLQLLHEEKRNEILTKSNGSNVYIKNISDRVDDETLRERFDEFGNITSVKIMRDD 418
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
G SK FGFV + D+A AV ++ G F DK YV AQ+K +R+ L+ +F +
Sbjct: 419 KGISKGFGFVCYNTPDEAKCAVSSMRGVMFYDKPLYVAIAQRKEDRKARLEQRFAE 474
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/281 (36%), Positives = 153/281 (54%), Gaps = 18/281 (6%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKL 172
+++ +L + + L D FS G + S +V D S YG+V + ++ A A+EK+
Sbjct: 104 LYVGDLHEDAQEEHLFDAFSKVGAVTSVRVCRDTATSSSLRYGYVNYFSQADAMTALEKM 163
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N L+ DK + V RD + +S NV+VKNL++ LQ+ F ++G I S
Sbjct: 164 NHSLILDKPIRV----MWSNRDPDARRSGVGNVFVKNLNDHIDNVILQELFSKFGDILSC 219
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V R+ DG S+ +GFV F + A A+E LN F+ ++ +V KKSER
Sbjct: 220 KVARNDDGTSRGYGFVQFAAQESADIAIENLNNSHFEGRQLHVAHFIKKSERS------- 272
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
DK+ NLY+KNLDD + +E +K FS FG + S K+M+ G S+G GFV+
Sbjct: 273 ----ANNDDKY--TNLYMKNLDDDMTEELIKLKFSQFGPLISVKIMKRDDGTSKGFGFVS 326
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQV 393
F +P+ A +A MNG + SK LYVA AQ+K +R+ LQ+
Sbjct: 327 FKSPDSAKKAKEAMNGIPLGSKSLYVARAQKKAERKQYLQL 367
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/244 (70%), Positives = 218/244 (89%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL +V D+QL+D+F+Q+G VVSVRVCRD+++R+SLGY YVN++N +AAR
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE+LNFTP+NGKPIR+MYS+RDPS RKSG GNIFIKNLDK+ID+KAL+DTF AFGNILS
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILS 151
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CK+ATD +G+S+GYGFVQF+ +ESAQ AI+KLNGML+NDK+V+VG F+RKQ+R+ +
Sbjct: 152 CKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNI 211
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF+NVYVKNLS++ T+++L++ FG+YGTITSAVVMRD DGKS+CFGFVNFEN+D AA+AV
Sbjct: 212 KFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAV 271
Query: 261 EALN 264
+ LN
Sbjct: 272 QELN 275
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 149/264 (56%), Gaps = 17/264 (6%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG-QSKGYGFVQFDNEESAQKAI 169
A ++++ +L +++ L D FS G ++S +V D+N +S GY +V ++N+ A +A+
Sbjct: 34 ATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARAL 93
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E LN +N K + + + RD KS N+++KNL +S + L +F +G I
Sbjct: 94 ELLNFTPINGKPIRIMY----SNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNI 149
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S + D G+S+ +GFV FE + A A++ LNG +DK+ +VG +K +RE
Sbjct: 150 LSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRE---- 205
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+ + +N+Y+KNL D++ D++LK++F +G+ITS VMRD G SR G
Sbjct: 206 --------NVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFG 257
Query: 350 FVAFSTPEEASRALLEMNGKMVVS 373
FV F + A++A+ E+N +V S
Sbjct: 258 FVNFENADAAAQAVQELNDGVVSS 281
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 97/186 (52%), Gaps = 17/186 (9%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG-KSKCFGFVNFENSDDAARAVE 261
T++YV +L ES + L F + G + S V RD + KS + +VN+ N DAARA+E
Sbjct: 35 TSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALE 94
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN + K + N ++ K N++IKNLD SID++
Sbjct: 95 LLNFTPINGKPIRI----------------MYSNRDPSSRKSGTGNIFIKNLDKSIDNKA 138
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L F FG+I SCK+ DPSG SRG GFV F E A A+ ++NG ++ K ++V
Sbjct: 139 LYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPF 198
Query: 382 QRKEDR 387
RK+DR
Sbjct: 199 VRKQDR 204
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASR 361
F +LY+ +L +S+ D +L +FS G + S +V RD S S G +V ++ +A+R
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRR 388
AL +N + KP+ + + R R
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSR 118
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/368 (51%), Positives = 260/368 (70%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 122 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTN+Y+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 241 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E QG LYIKNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 360
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A++A+ EMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 376 LYVALAQR 383
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 160/282 (56%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I
Sbjct: 128 TMNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 183
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+
Sbjct: 184 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRS 242
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GF
Sbjct: 243 K--------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 292
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+
Sbjct: 293 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELK 334
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/367 (52%), Positives = 267/367 (72%), Gaps = 4/367 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL ++VT+ L+ F+++G V+S+R+CRDL TRRSLGY YVNF +
Sbjct: 4 AAKYRMASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLDK+ID+K+L++ FSAFG
Sbjct: 64 AQKALDTMNFDVVKGKAIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F ++ +A +AIE++NG L D +V+VG F +++R+ E+
Sbjct: 124 ILSSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAEL 182
Query: 198 -NK-SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK S+FTNVY+KN + +E L++ F YG I S VM + GKS+ FGFV+F++ +
Sbjct: 183 RNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK+ + + +VG+AQKK ER+ ELK FEQ KE QGA LYIKNLD+
Sbjct: 243 ARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQGAKLYIKNLDE 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FS FGSI+ KVM++ G S+G G + FS+ E+A+RA+ MNG+++ SKP
Sbjct: 303 NIDDEKLRKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSSEDAARAMTVMNGRILGSKP 361
Query: 376 LYVALAQ 382
L +ALAQ
Sbjct: 362 LNIALAQ 368
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 165/282 (58%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FS G +LS ++ DL +S GY +V F AQKA++
Sbjct: 10 ASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + KS NV++KNL +S + L + F +G I
Sbjct: 70 TMNFDVVKGKAIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGKIL 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G SK + FV+F++ A RA+E +NGK D + +VG+ + + +RE EL++
Sbjct: 126 SSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAELRN 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN D +DDE+L+++FS +G I S KVM + G SRG GF
Sbjct: 185 K--------ASEF--TNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGF 234
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F + E A +A+ EMNGK V +P++V AQ+K +R+A L+
Sbjct: 235 VSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELK 276
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/368 (51%), Positives = 260/368 (70%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 122 AQKALDTMNFDMIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTN+Y+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 241 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E QG LYIKNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 360
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A++A+ EMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 376 LYVALAQR 383
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 170/319 (53%), Gaps = 33/319 (10%)
Query: 92 GKPIRVMYSHRDPSLRKSG-----------------AGNIFIKNLDKAIDHKALHDTFSA 134
G+ +++ HRD S G ++++ +L + L FS
Sbjct: 31 GQSCGLVFPHRDCSKSSRGQTHSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFST 90
Query: 135 FGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
G +LS ++ D + +S GY +V F AQKA++ +N ++ K + L +R
Sbjct: 91 VGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDMIKGKSIR----LMWSQR 146
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
D + +S NV++KNL +S + L + F +G I S+ VM D G SK + FV+F+N
Sbjct: 147 DAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQ 205
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
A RA+E +NGK + +VG+ + + +RE EL+ + A +F N+YIKN
Sbjct: 206 SAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK--------ASEF--TNIYIKNF 255
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
+DDE+LK +FS +G S KVM D SG S+G GFV+F + E A +A+ EMNG+ +
Sbjct: 256 GGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDING 315
Query: 374 KPLYVALAQRKEDRRARLQ 392
+ ++V AQ+K +R+A L+
Sbjct: 316 QLIFVGRAQKKVERQAELK 334
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/368 (51%), Positives = 260/368 (70%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 122 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTN+Y+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 241 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E QG LYIKNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERICGCQGVKLYIKNLDD 360
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A++A+ EMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 376 LYVALAQR 383
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 160/282 (56%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I
Sbjct: 128 TMNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 183
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+
Sbjct: 184 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRS 242
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GF
Sbjct: 243 K--------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 292
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+
Sbjct: 293 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELK 334
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/383 (48%), Positives = 265/383 (69%), Gaps = 4/383 (1%)
Query: 4 VQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR 63
VQ G G + A ++ SLYVGDL A+ T+ L+ F+ G V+S+R+CRD++TRR
Sbjct: 102 VQEAGSARGGEVSVAAKYRLASLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRR 161
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAI 123
LGY YVNF +A +AL+ +NF + GKPIR+M+S RD LRKSG GN+ IKNLD+++
Sbjct: 162 PLGYAYVNFLRPADAQKALDTMNFDAVEGKPIRLMWSQRDACLRKSGVGNVIIKNLDRSV 221
Query: 124 DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
D+K L++ FS FG ILS KV +D G SKGY FV F ++ +A AI+++NG ++ D+QV
Sbjct: 222 DNKTLYEHFSGFGRILSSKVMSDDQG-SKGYAFVHFQSQSAADCAIQEMNGKVIRDRQVL 280
Query: 184 VGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
V F +++R+ E+ S+FTNVYVKN E +E LQ F +YG S VM D GK
Sbjct: 281 VAPFRSRRDREAELRTRTSEFTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGK 340
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
SK FGFV+F++ + A +AVE +NGK + + +VG+AQKK ER+ ELK FE+ ++ A
Sbjct: 341 SKGFGFVSFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELKQVFEELKRDGAR 400
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361
+ QG LYIKNLDD++DD++L++ FS FGSI+ KVM + G +G G V FS+PEEA++
Sbjct: 401 RCQGVKLYIKNLDDTVDDDRLRRAFSSFGSISRVKVMEE-EGQRKGFGLVCFSSPEEAAK 459
Query: 362 ALLEMNGKMVVSKPLYVALAQRK 384
A+ +MNG+++ SKPL +ALA+R+
Sbjct: 460 AMTQMNGRVLGSKPLNIALAKRQ 482
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 153/281 (54%), Gaps = 16/281 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEK 171
++++ +L L FS G +LS ++ D+ + GY +V F AQKA++
Sbjct: 123 SLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPADAQKALDT 182
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N + K + L +RD + KS NV +KNL S + L + F +G I S
Sbjct: 183 MNFDAVEGKPIR----LMWSQRDACLRKSGVGNVIIKNLDRSVDNKTLYEHFSGFGRILS 238
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F++ A A++ +NGK D++ V + + +RE EL+ +
Sbjct: 239 SKVMSDDQG-SKGYAFVHFQSQSAADCAIQEMNGKVIRDRQVLVAPFRSRRDREAELRTR 297
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
+ N+Y+KN + +DDE+L+ +FS +G S KVM D SG S+G GFV
Sbjct: 298 TSEF----------TNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFV 347
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+F + E A +A+ EMNGK + + ++V AQ+KE+R+A L+
Sbjct: 348 SFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELK 388
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 30/142 (21%)
Query: 272 EWYVGKAQKKSERE---LELKHQF----------------EQNMKEA----------ADK 302
EW G+ ++K +R L+ KH ++++EA A K
Sbjct: 59 EWETGEGRRKEKRSKKILKSKHPTWPRARGKFRAEFRVGPRRSVQEAGSARGGEVSVAAK 118
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASR 361
++ A+LY+ +L ++ L + FS G + S ++ RD + G +V F P +A +
Sbjct: 119 YRLASLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPADAQK 178
Query: 362 ALLEMNGKMVVSKPLYVALAQR 383
AL MN V KP+ + +QR
Sbjct: 179 ALDTMNFDAVEGKPIRLMWSQR 200
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/367 (50%), Positives = 254/367 (69%), Gaps = 1/367 (0%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVGDL +V + L+D F+++G V SVRVCRD +T RSL YGYVN+ + +A AL+ L
Sbjct: 44 LYVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKL 103
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N + + KPIRVM+S+RDP R+SG GNIF+KNL+ ++D+ +L + FS FG++LSCKVA
Sbjct: 104 NHSLVLDKPIRVMWSNRDPDARRSGVGNIFVKNLNNSVDNASLQELFSKFGDVLSCKVAK 163
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNV 205
+ +G S+GYGFVQF ++ESA +AI LNG L ND++++V F++K ER N KFTN+
Sbjct: 164 NEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHVATFIKKSERSAN-NDDKFTNL 222
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNG 265
Y+K+L + TEE ++ F ++G I S +MR DG S FGFV+F+N + A +A E ++G
Sbjct: 223 YMKHLDDDITEELVKLKFSQFGPIVSVKIMRRPDGSSLGFGFVSFQNPESAIKAQETMHG 282
Query: 266 KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQL 325
K YV +AQKK ER+ L+ E+ E K +N+YIKN+ D +DD+ L+
Sbjct: 283 MLLGSKALYVARAQKKEERKQYLQRLHEEKRNEIITKSNESNVYIKNIHDEVDDDALRAR 342
Query: 326 FSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385
F+ +G+ITS KVMRD GISRG GFV +STPEEA + M G M KPLYVA+ QRKE
Sbjct: 343 FAEYGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSVVNSMRGVMFFGKPLYVAIFQRKE 402
Query: 386 DRRARLQ 392
+RRA+LQ
Sbjct: 403 ERRAKLQ 409
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 26/299 (8%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + G +++V +L +V ++ L +LF++ G V+S +V ++ S GYG+V F++
Sbjct: 122 PDARRSGVGNIFVKNLNNSVDNASLQELFSKFGDVLSCKVAKN-EDGTSRGYGFVQFASQ 180
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG--------NIFIKNLDKAIDHKA 127
+ A A+ LN + N + + V ++KS N+++K+LD I +
Sbjct: 181 ESADEAIGNLNGSLFNDRKLHVATF-----IKKSERSANNDDKFTNLYMKHLDDDITEEL 235
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
+ FS FG I+S K+ +G S G+GFV F N ESA KA E ++GMLL K +YV
Sbjct: 236 VKLKFSQFGPIVSVKIMRRPDGSSLGFGFVSFQNPESAIKAQETMHGMLLGSKALYVARA 295
Query: 188 LRKQER------------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
+K+ER + I KS +NVY+KN+ + ++ L+ F EYG ITSA VM
Sbjct: 296 QKKEERKQYLQRLHEEKRNEIITKSNESNVYIKNIHDEVDDDALRARFAEYGNITSAKVM 355
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
RD G S+ FGFV + ++A V ++ G F K YV Q+K ER +L+ F Q
Sbjct: 356 RDDKGISRGFGFVCYSTPEEAKSVVNSMRGVMFFGKPLYVAIFQRKEERRAKLQQHFAQ 414
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/366 (51%), Positives = 264/366 (72%), Gaps = 4/366 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL A VT+ L+ F+ +G V+S+R+CRDL T+RSLGY YVNF + +A
Sbjct: 6 KYRQASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQ 65
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNL K+ID+K L++ FSAFG IL
Sbjct: 66 KALDTMNFDMIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGKIL 125
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-N 198
S KV +D G S+GY FV F ++ +A +AIE +NG LL +++VG F +++R E+ N
Sbjct: 126 SSKVMSDDAG-SRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQAELQN 184
Query: 199 KS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
K+ +FTNVY+KN + +E L++ F +G I S VM D G+SK FGFV+F++ + A
Sbjct: 185 KANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGFVSFDSHEAAQ 244
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RAVE +NGK + +VG+AQKK+ER+ ELK FEQ +E +F+G LYIKNLDDSI
Sbjct: 245 RAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMKQERYRRFRGVKLYIKNLDDSI 304
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ FS FGSI+ KVM++ G S+G G + FS+PEEA++A++EMNG+++ SK L
Sbjct: 305 DDERLRREFSSFGSISRVKVMKE-EGRSKGFGLICFSSPEEATKAMVEMNGRILGSKSLN 363
Query: 378 VALAQR 383
+ALAQR
Sbjct: 364 IALAQR 369
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 167/289 (57%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIE 170
++++ +L + L FSA G +LS ++ DL Q S GY +V F + AQKA++
Sbjct: 10 ASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQKALD 69
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + KS NV++KNL +S + L + F +G I
Sbjct: 70 TMNFDMIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGKIL 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D D S+ + FV+F++ A RA+EA+NG +VG + + +R+ EL++
Sbjct: 126 SSKVMSD-DAGSRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQAELQN 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A++F N+YIKN D +DDE+LK++FS FG I S KVM D G S+G GF
Sbjct: 185 K--------ANEF--TNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGF 234
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
V+F + E A RA+ MNGK + +PL+V AQ+K +R+A L++ Q +
Sbjct: 235 VSFDSHEAAQRAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMK 283
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/374 (51%), Positives = 256/374 (68%), Gaps = 7/374 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F + SLYVGDL+ +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ + Q+A
Sbjct: 24 FSSASLYVGDLQPDVTEAVLYEVFNTIGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEA 83
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LN+ + G P R+M+S+RDPSLRKSGAGNIF+KNLDK+ID K+L+DTF+ FG ILS
Sbjct: 84 ALENLNYIEIKGHPTRIMWSNRDPSLRKSGAGNIFVKNLDKSIDTKSLYDTFAHFGTILS 143
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D G S+ YGFV +++EESA++AIEK+NGML+ K+V V FLRKQ+R+TE
Sbjct: 144 CKVAVDSTGASRRYGFVHYESEESAREAIEKVNGMLIGGKKVEVAPFLRKQDRETE---E 200
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TN+YV+N EE L++ +YG ITS +M D K + F FVN++ + A V
Sbjct: 201 VYTNLYVRNFPADWDEEALRQFLEKYGEITS--MMLKEDSKGRRFAFVNYKEASVAKEVV 258
Query: 261 EALNGKKFDDK--EWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
LN K ++ V Q K +R+ LK QF DK +NLYIKNLDD+ D
Sbjct: 259 TTLNDLKLEEASDPLLVCPHQDKVKRQNMLKAQFSTVSPGQDDKRLTSNLYIKNLDDTFD 318
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D L +LF FG+ITS KVM D + SRG GFV FS P+EA++A+ M+ K+V KPLYV
Sbjct: 319 DASLGELFKQFGTITSSKVMLDANNNSRGFGFVCFSNPQEATKAIAAMHLKLVKGKPLYV 378
Query: 379 ALAQRKEDRRARLQ 392
LA++++ R R+Q
Sbjct: 379 GLAEKRDQRLMRMQ 392
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 148/299 (49%), Gaps = 30/299 (10%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ LYD F G ++S +V D ST S YG+V++ + + A A
Sbjct: 113 GAGNIFVKNLDKSIDTKSLYDTFAHFGTILSCKVAVD-STGASRRYGFVHYESEESAREA 171
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA------GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N + GK + V P LRK N++++N D +AL +
Sbjct: 172 IEKVNGMLIGGKKVEVA-----PFLRKQDRETEEVYTNLYVRNFPADWDEEALRQFLEKY 226
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL---NDKQVYVGH------ 186
G I S + D G + + FV + A++ + LN + L +D + H
Sbjct: 227 GEITSMMLKEDSKG--RRFAFVNYKEASVAKEVVTTLNDLKLEEASDPLLVCPHQDKVKR 284
Query: 187 --FLRKQERDTEI---NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
L+ Q +K +N+Y+KNL ++ + L + F ++GTITS+ VM D +
Sbjct: 285 QNMLKAQFSTVSPGQDDKRLTSNLYIKNLDDTFDDASLGELFKQFGTITSSKVMLDANNN 344
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ--FEQNMKE 298
S+ FGFV F N +A +A+ A++ K K YVG A+K+ +R + ++ + FE + ++
Sbjct: 345 SRGFGFVCFSNPQEATKAIAAMHLKLVKGKPLYVGLAEKRDQRLMRMQQRRGFEPHARD 403
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/366 (51%), Positives = 264/366 (72%), Gaps = 4/366 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL A+VT+ L+ FN +G V+S+R+CRDL TRRSLGY YVNF N +A
Sbjct: 6 KYRHASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQ 65
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+ L+ +NF + GK IR+M+S RD LRKSG GN+FIKNLD++ID+K L++ FSAFG IL
Sbjct: 66 KVLDTMNFDMIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSAFGKIL 125
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-N 198
S KV +D G S+GY FV F ++ +A +AIE++NG LL + +++VG F ++ER+ E+ N
Sbjct: 126 SSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFVGPFKNRKEREAELQN 184
Query: 199 KS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
K+ +FTNVY+KN + +E L++ F +YG I S VM D GKSK FGFV+F+ + A
Sbjct: 185 KANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAQ 244
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RAVE +NGK + +VG+AQKK+ER+ ELK FEQ +E + +G LYIKNLD++I
Sbjct: 245 RAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFGRCRGVKLYIKNLDETI 304
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D+E+L++ FS FGS++ KVM + G S+G G + FS PEEA++A+ EMNG+++ SK +
Sbjct: 305 DEEQLRRAFSSFGSMSRVKVM-EEEGRSKGFGLICFSCPEEATKAMAEMNGQVLGSKAIN 363
Query: 378 VALAQR 383
+ALAQR
Sbjct: 364 IALAQR 369
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 161/282 (57%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L F+ G +LS ++ DL +S GY +V F N AQK ++
Sbjct: 10 ASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQKVLD 69
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + KS NV++KNL S + L + F +G I
Sbjct: 70 TMNFDMIQGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSAFGKIL 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G S+ + FV+F++ A RA+E +NG + +VG + + ERE EL++
Sbjct: 126 SSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFVGPFKNRKEREAELQN 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A++F N+YIKN D +DDE+LK++FS +G I S KVM D SG S+G GF
Sbjct: 185 K--------ANEF--TNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGF 234
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F T E A RA+ MNGK + + ++V AQ+K +R+A L+
Sbjct: 235 VSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAELK 276
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 104/184 (56%), Gaps = 20/184 (10%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
AN+F T++Y+ + ++ D +L ++F+Q G++VSV+V D S+ +S G+G+V+F +
Sbjct: 186 ANEF--TNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTD-SSGKSKGFGFVSFDTHEA 242
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPS-----------LRKSGAG-----NIFIKNLDK 121
A RA+E +N + G+ + V + + L++ G ++IKNLD+
Sbjct: 243 AQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFGRCRGVKLYIKNLDE 302
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
ID + L FS+FG++ KV + G+SKG+G + F E A KA+ ++NG +L K
Sbjct: 303 TIDEEQLRRAFSSFGSMSRVKVMEE-EGRSKGFGLICFSCPEEATKAMAEMNGQVLGSKA 361
Query: 182 VYVG 185
+ +
Sbjct: 362 INIA 365
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAA 257
K + ++YV +L TE+ L + F G + S + RD +S + +VNF N DA
Sbjct: 6 KYRHASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQ 65
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG-ANLYIKNLDDS 316
+ ++ +N FD Q KS R + + ++A + G N++IKNLD S
Sbjct: 66 KVLDTMN---FD-------MIQGKSIRLM-------WSQRDAYLRKSGIGNVFIKNLDRS 108
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
ID++ L + FS FG I S KVM D G SRG FV F + A RA+ EMNG ++ + L
Sbjct: 109 IDNKMLYEHFSAFGKILSSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLKNCRL 167
Query: 377 YVALAQRKEDRRARLQ 392
+V + +++R A LQ
Sbjct: 168 FVGPFKNRKEREAELQ 183
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 176/304 (57%), Positives = 232/304 (76%), Gaps = 3/304 (0%)
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N + RALE LN+T + G+P R+M+
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 61
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D G SKGYGFV +
Sbjct: 62 SQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHY 121
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEE 217
+ E+A AI+ +NGMLLN+K+V+VGH + K++R ++ K+ FTN+YVKN+ + T+E
Sbjct: 122 ETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDE 181
Query: 218 DLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276
+ + F +YG ITSA + RD + GKS+ FGFVNF + + A+ AVE LN + ++ YVG
Sbjct: 182 EFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVG 241
Query: 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D IDDEKL++LFS +G+ITS K
Sbjct: 242 RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAK 301
Query: 337 VMRD 340
VMR+
Sbjct: 302 VMRE 305
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 199/393 (50%), Gaps = 63/393 (16%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 72 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNA 130
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ NI++KN+++ + + F +
Sbjct: 131 IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRALFEKY 190
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G+I S ++ D G+S+G+GFV F + E+A A+E LN L +++YVG +K ER+
Sbjct: 191 GDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHERE 250
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L++ F YG ITSA VMR+ +
Sbjct: 251 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMREATAE- 309
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
V E+ D K DKE G+A +K+E E K
Sbjct: 310 -----VPTESDKD-----------KEADKEKAKGEAGEKTEEGPEGK------------- 340
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
+ D + K G K + G S+G GFV FS P+EAS+A
Sbjct: 341 -------------TDDKSEEKTEEKTEGKTEGAKPEKKHLGKSKGFGFVCFSNPDEASKA 387
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
+ EMN +MV KPLYVALAQRK+ R+++L+ +
Sbjct: 388 VTEMNQRMVHGKPLYVALAQRKDVRKSQLEASI 420
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 17/175 (9%)
Query: 219 LQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L + F G + S V RD +S + +VN+ N+ D RA+E LN + +
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRI-- 59
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
S+R+ L+ K N++IKNLD +ID++ L F+ FG+I SCKV
Sbjct: 60 --MWSQRDPALR------------KTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 105
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+D G S+G GFV + T E A+ A+ +NG ++ K ++V K+DR+++ +
Sbjct: 106 AQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFE 160
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 182/367 (49%), Positives = 253/367 (68%), Gaps = 1/367 (0%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVGDL +V + L++ F+++G V SVRVCRD +T RSL YGYVN+ + +A AL+ L
Sbjct: 123 LYVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVVALDKL 182
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N + + KPIRVM+S+RDP R+SG GNIF+KNL ++D+ +L + FS FG++LSCKVA
Sbjct: 183 NHSLVLDKPIRVMWSNRDPDARRSGVGNIFVKNLSSSVDNASLQELFSKFGDVLSCKVAK 242
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNV 205
+ +G S+GYGFVQF ++ESA +AI LNG L ND++++V F++K ER N KFTN+
Sbjct: 243 NEDGTSRGYGFVQFTSQESADEAIGNLNGSLFNDRKLHVATFIKKSERSAN-NDDKFTNL 301
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNG 265
Y+K+L + TEE ++ F ++G+I S +M+ DG S FGFV+F+N + A +A +NG
Sbjct: 302 YMKHLDDDITEELVKLKFSQFGSIVSVKIMKRPDGSSLGFGFVSFQNPESAIKAQSTMNG 361
Query: 266 KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQL 325
K YV +AQKK ER+ L+ E+ E + +N+YIKN+ D +DD+ L+
Sbjct: 362 MLLGSKALYVARAQKKEERKQYLQRLHEEKRNEIMTRCNESNVYIKNIHDEVDDDALRAR 421
Query: 326 FSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385
F FG+ITS KVMRD GISRG GFV +STPEEA A+ M G M KPLYVA+ QRKE
Sbjct: 422 FVEFGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSAVNNMRGVMFFGKPLYVAIFQRKE 481
Query: 386 DRRARLQ 392
+R+A+LQ
Sbjct: 482 ERKAKLQ 488
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 162/299 (54%), Gaps = 26/299 (8%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + G +++V +L ++V ++ L +LF++ G V+S +V ++ S GYG+V F++
Sbjct: 201 PDARRSGVGNIFVKNLSSSVDNASLQELFSKFGDVLSCKVAKN-EDGTSRGYGFVQFTSQ 259
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG--------NIFIKNLDKAIDHKA 127
+ A A+ LN + N + + V ++KS N+++K+LD I +
Sbjct: 260 ESADEAIGNLNGSLFNDRKLHVATF-----IKKSERSANNDDKFTNLYMKHLDDDITEEL 314
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
+ FS FG+I+S K+ +G S G+GFV F N ESA KA +NGMLL K +YV
Sbjct: 315 VKLKFSQFGSIVSVKIMKRPDGSSLGFGFVSFQNPESAIKAQSTMNGMLLGSKALYVARA 374
Query: 188 LRKQER------------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
+K+ER + + + +NVY+KN+ + ++ L+ F E+G ITSA VM
Sbjct: 375 QKKEERKQYLQRLHEEKRNEIMTRCNESNVYIKNIHDEVDDDALRARFVEFGNITSAKVM 434
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
RD G S+ FGFV + ++A AV + G F K YV Q+K ER+ +L+ F Q
Sbjct: 435 RDDKGISRGFGFVCYSTPEEAKSAVNNMRGVMFFGKPLYVAIFQRKEERKAKLQQHFAQ 493
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 189/416 (45%), Positives = 266/416 (63%), Gaps = 51/416 (12%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLY GDL +VT++ LY++FN +G V S+RVCRD TR+SLGY Y+NF N +A RAL+
Sbjct: 49 SLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 108
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN++P+ G+P R+M+SHRDP+LR+SGAGN+++KNLD+ ID+KAL+DTFS FGNILSCKVA
Sbjct: 109 LNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVA 168
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+G+S+G+GFV F+++ESA+ AI KLNGM + +K VYV F + ER+ K+ FTN
Sbjct: 169 LTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPKN-FTN 227
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VY+K++ S EE +++ FG +G ITS V D G+ F FVN+ + A AVE ++
Sbjct: 228 VYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMD 285
Query: 265 GKKFDDKE-----------------------------------------------WYVGK 277
GK ++E YV +
Sbjct: 286 GKDVRNEEEKAADRAQREREREERKAAREAAKAEGREEGDDVESDDDDEEPETSHLYVAR 345
Query: 278 AQKKSERELELKHQFEQN-MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
AQ K+ER LK QF + + +F G NLY+KNL + +DD +LK++F PFG++TS K
Sbjct: 346 AQPKAERAAVLKEQFSASRGAQGGGRFGGVNLYVKNLGEDVDDAELKKMFEPFGTVTSVK 405
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
VM D G+SRG GFV FST EEA++A+ +M+ K++ KPLYV + +++E R RLQ
Sbjct: 406 VMVDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQ 461
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
N+YVKNL E + +L+K F +GT+TS VM D G S+ FGFV F ++A +AV
Sbjct: 375 VNLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTD 434
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQF 292
++ K K YVG +K+ +R L+ ++
Sbjct: 435 MHLKLIGGKPLYVGMHEKREQRLERLQQRY 464
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+LYV +L +V D++L +F G V SV+V D S G+G+V FS +EA +A+
Sbjct: 375 VNLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVD-DKGVSRGFGFVCFSTHEEATKAVT 433
Query: 84 MLNFTPLNGKPIRV-MYSHRDPSLRK 108
++ + GKP+ V M+ R+ L +
Sbjct: 434 DMHLKLIGGKPLYVGMHEKREQRLER 459
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 189/416 (45%), Positives = 266/416 (63%), Gaps = 51/416 (12%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLY GDL +VT++ LY++FN +G V S+RVCRD TR+SLGY Y+NF N +A RAL+
Sbjct: 49 SLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 108
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN++P+ G+P R+M+SHRDP+LR+SGAGN+++KNLD+ ID+KAL+DTFS FGNILSCKVA
Sbjct: 109 LNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVA 168
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+G+S+G+GFV F+++ESA+ AI KLNGM + +K VYV F + ER+ K+ FTN
Sbjct: 169 LTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPKN-FTN 227
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VY+K++ S EE +++ FG +G ITS V D G+ F FVN+ + A AVE ++
Sbjct: 228 VYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMD 285
Query: 265 GKKFDDKE-----------------------------------------------WYVGK 277
GK ++E YV +
Sbjct: 286 GKDVRNEEEKAADRAQREREREERKAAREAAKAEGREDGDDVESDDDDEEPETSHLYVAR 345
Query: 278 AQKKSERELELKHQFEQN-MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
AQ K+ER LK QF + + +F G NLY+KNL + +DD +LK++F PFG++TS K
Sbjct: 346 AQPKAERAAVLKEQFSASRGAQGGGRFGGVNLYVKNLGEDVDDAELKKMFEPFGTVTSVK 405
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
VM D G+SRG GFV FST EEA++A+ +M+ K++ KPLYV + +++E R RLQ
Sbjct: 406 VMVDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQ 461
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
N+YVKNL E + +L+K F +GT+TS VM D G S+ FGFV F ++A +AV
Sbjct: 375 VNLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTD 434
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQF 292
++ K K YVG +K+ +R L+ ++
Sbjct: 435 MHLKLIGGKPLYVGMHEKREQRLERLQQRY 464
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+LYV +L +V D++L +F G V SV+V D S G+G+V FS +EA +A+
Sbjct: 375 VNLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVD-DKGVSRGFGFVCFSTHEEATKAVT 433
Query: 84 MLNFTPLNGKPIRV-MYSHRDPSLRK 108
++ + GKP+ V M+ R+ L +
Sbjct: 434 DMHLKLIGGKPLYVGMHEKREQRLER 459
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 185/389 (47%), Positives = 262/389 (67%), Gaps = 4/389 (1%)
Query: 4 VQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR 63
V+ + GG NA +LYVGDL +V + L ++F ++G + SVRVCRD +T
Sbjct: 21 VEVEAVPAVAGGLNAT---VPALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSN 77
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAI 123
SL YGYVN+ + +AA ALE LN + + KPIRVM+S+RDP R+SG GN+F+KNL+ +
Sbjct: 78 SLRYGYVNYLSQADAAIALEKLNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLV 137
Query: 124 DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
D+ +L + F FG+ILSCKVA + +G S+GYGFVQF +ESA +I+ LN +Q++
Sbjct: 138 DNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLH 197
Query: 184 VGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
V F++K ER T N K+TN+Y+KNL + TEE ++ F +YG + S +M+ DG SK
Sbjct: 198 VATFIKKSERSTN-NDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSK 256
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
FGFV+F+N + A RA E++NG K YV +AQKK+ER+ L+ E+ E K
Sbjct: 257 GFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKS 316
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
G+N+YIKN++D + D+ L++ F+ FG+ITS K+MRD GIS+G GFV ++TPEEA A+
Sbjct: 317 NGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAV 376
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
M G M KPLYVA+AQRKE+RRA+L+
Sbjct: 377 SNMRGVMFYGKPLYVAIAQRKEERRAKLE 405
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 163/295 (55%), Gaps = 18/295 (6%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + G +++V +L V + L +LF + G ++S +V ++ S GYG+V F+
Sbjct: 118 PDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKN-EDGTSRGYGFVQFALQ 176
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSG----AGNIFIKNLDKAIDHKALHDT 131
+ A +++ LN + G+ + V + S R + N+++KNLD I + +
Sbjct: 177 ESADASIQNLNNSHFCGRQLHVA-TFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLK 235
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FS +G ++S K+ +G SKG+GFV F N ESA++A E +NGMLL K +YV +K
Sbjct: 236 FSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKA 295
Query: 192 ER------------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
ER + I KS +NVY+KN+++ ++ L++ F E+G ITSA +MRD
Sbjct: 296 ERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEK 355
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
G SK FGFV + ++A AV + G F K YV AQ+K ER +L+ +F +
Sbjct: 356 GISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAE 410
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 185/340 (54%), Positives = 243/340 (71%), Gaps = 23/340 (6%)
Query: 56 CRDLSTRRSLGYGYVNFSNAQE--AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN 113
R L T L + S+ E A RAL+ +NF + GKP+R+M+S RDPSLRKSG GN
Sbjct: 131 SRALGTLPLLARPSADPSSPWESRAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 190
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
IFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+N
Sbjct: 191 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 249
Query: 174 GMLLNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
GMLLND++V+VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++G S
Sbjct: 250 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 309
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
VM D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +
Sbjct: 310 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 369
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
FEQ ++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS K
Sbjct: 370 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK--------------- 414
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
EEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 415 ---NSEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 451
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 162/294 (55%), Gaps = 40/294 (13%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 187 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 244
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 245 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 304
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 305 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 364
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA
Sbjct: 365 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA---------- 413
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+NS++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 414 --------KNSEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 459
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 137/231 (59%), Gaps = 15/231 (6%)
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
E A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 152 ESRAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 207
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 208 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 266
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 267 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 316
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 317 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 367
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 194/440 (44%), Positives = 276/440 (62%), Gaps = 74/440 (16%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVGDL+ +VT++ LY++FN + V SVR+CRD TRRSLGY YVN+++ +A RAL
Sbjct: 11 SASLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LNFT + +P R+M+ RDP+ R++ GN+F+KNLDK+ID+K L DTFS FGNI+SCK
Sbjct: 71 DTLNFTCIRSRPCRIMWCLRDPASRRNNEGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCK 130
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ATD G S GYGF+ F++ ESA++AI +LNGM+L D+ +YVG F RK ER +E +K+ F
Sbjct: 131 IATDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVGKFQRKAERFSEKDKT-F 189
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE----------- 251
TNVYVK++ ++ +EE L FG YG I+S V+ D G+ FGFVNFE
Sbjct: 190 TNVYVKHIPKTWSEETLHTLFGVYGKISSLVLQSDSKGRP--FGFVNFEDPESAKKAVAN 247
Query: 252 -------------NSDDAARA---------------------VEALNGKKFDDKE----- 272
NS+++ R VE+ + K+ +DKE
Sbjct: 248 LHNALVTPLGVELNSNNSERTESGKDDGLSSISSNTESSDETVESNDYKQRNDKEDPQEA 307
Query: 273 --------------------WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
YV +AQK++ER++ LK Q E +E+ +++QG NLY+KN
Sbjct: 308 DVEKNSDEENSVPFDVQPNRLYVSRAQKRNERQVVLKSQHEA-ARESQNRYQGVNLYVKN 366
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
L +S+ + L+ LF P+G+I+S + D SGISRG GFV+F +P+EA++A+ EM+ K+V
Sbjct: 367 LSESMTESDLRSLFEPYGTISSVSIKTDESGISRGFGFVSFLSPDEATKAITEMHLKLVR 426
Query: 373 SKPLYVALAQRKEDRRARLQ 392
KPLYV L +RKE R RLQ
Sbjct: 427 GKPLYVGLHERKEQRALRLQ 446
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 132/282 (46%), Gaps = 35/282 (12%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV + ++ L+ LF G++ S+ + D R +G+VNF + + A +A+
Sbjct: 190 TNVYVKHIPKTWSEETLHTLFGVYGKISSLVLQSDSKGR---PFGFVNFEDPESAKKAVA 246
Query: 84 MLN---FTPL----NGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
L+ TPL N S +D L + ++ D+K +D
Sbjct: 247 NLHNALVTPLGVELNSNNSERTESGKDDGLSSISSNTESSDETVESNDYKQRNDK----- 301
Query: 137 NILSCKVATDLNGQSKGYGFVQFD---NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE- 192
D+ S V FD N +A ++ N++QV L+ Q
Sbjct: 302 ---EDPQEADVEKNSDEENSVPFDVQPNRLYVSRAQKR------NERQV----VLKSQHE 348
Query: 193 --RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250
R+++ N+ + N+YVKNLSES TE DL+ F YGTI+S + D G S+ FGFV+F
Sbjct: 349 AARESQ-NRYQGVNLYVKNLSESMTESDLRSLFEPYGTISSVSIKTDESGISRGFGFVSF 407
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+ D+A +A+ ++ K K YVG ++K +R L L+ +
Sbjct: 408 LSPDEATKAITEMHLKLVRGKPLYVGLHERKEQRALRLQQRI 449
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N++ +LYV +L ++T+S L LF G + SV + D S S G+G+V+F + EA
Sbjct: 355 NRYQGVNLYVKNLSESMTESDLRSLFEPYGTISSVSIKTDESG-ISRGFGFVSFLSPDEA 413
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ ++ + GKP+ V R
Sbjct: 414 TKAITEMHLKLVRGKPLYVGLHER 437
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 367 bits (941), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 185/389 (47%), Positives = 262/389 (67%), Gaps = 4/389 (1%)
Query: 4 VQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR 63
V+ + GG NA +LYVGDL +V + L ++F ++G + SVRVCRD +T
Sbjct: 21 VEVEAVPAAAGGLNAT---VPALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSN 77
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAI 123
SL YGYVN+ + +AA ALE LN + + KPIRVM+S+RDP R+SG GN+F+KNL+ +
Sbjct: 78 SLRYGYVNYLSQADAAIALEKLNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLV 137
Query: 124 DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
D+ +L + F FG+ILSCKVA + +G S+GYGFVQF +ESA +I+ LN +Q++
Sbjct: 138 DNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLH 197
Query: 184 VGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
V F++K ER T N K+TN+Y+KNL + TEE ++ F +YG + S +M+ DG SK
Sbjct: 198 VATFIKKSERSTN-NDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSK 256
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
FGFV+F+N + A RA E++NG K YV +AQKK+ER+ L+ E+ E K
Sbjct: 257 GFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQCLHEEKRNEIITKS 316
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
G+N+YIKN++D + D+ L++ F+ FG+ITS K+MRD GIS+G GFV ++TPEEA A+
Sbjct: 317 NGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAV 376
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
M G M KPLYVA+AQRKE+RRA+L+
Sbjct: 377 SNMRGVMFYGKPLYVAIAQRKEERRAKLE 405
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 164/295 (55%), Gaps = 18/295 (6%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + G +++V +L V + L +LF + G ++S +V ++ S GYG+V F+
Sbjct: 118 PDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKN-EDGTSRGYGFVQFALQ 176
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSG----AGNIFIKNLDKAIDHKALHDT 131
+ A +++ LN + G+ + V + S R + N+++KNLD I + +
Sbjct: 177 ESADASIQNLNNSHFCGRQLHVA-TFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLK 235
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG------ 185
FS +G ++S K+ +G SKG+GFV F N ESA++A E +NGMLL K +YV
Sbjct: 236 FSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKA 295
Query: 186 ------HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
L +++R+ I KS +NVY+KN+++ ++ L++ F E+G ITSA +MRD
Sbjct: 296 ERKQYLQCLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEK 355
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
G SK FGFV + ++A AV + G F K YV AQ+K ER +L+ +F +
Sbjct: 356 GISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAE 410
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 185/367 (50%), Positives = 255/367 (69%), Gaps = 4/367 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FS FG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDREAEL 182
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTN+Y+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 183 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +QG LY+KNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDD 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI KVM+ G S+G GF+ FS+ E+A++A++EMNG + SKP
Sbjct: 303 TIDDEKLRNEFSSFGSIIRVKVMQ-QEGQSKGFGFICFSSLEDATKAMIEMNGCFLGSKP 361
Query: 376 LYVALAQ 382
+ +ALAQ
Sbjct: 362 ISIALAQ 368
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 163/289 (56%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FSA G +LS ++ D + +S GY +V F AQKA++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALD 69
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I
Sbjct: 70 TMNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKIL 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDREAELRS 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GF
Sbjct: 185 K--------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
V+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+ Q +
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 185/367 (50%), Positives = 256/367 (69%), Gaps = 4/367 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 130 AAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTD 189
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FS FG
Sbjct: 190 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGK 249
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 250 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRLLKSCKVFVGRFKNRKDREAEL 308
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTN+Y+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 309 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFVSFDSHEA 368
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +QG LY+KNLDD
Sbjct: 369 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDD 428
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI KVM+ G S+G GF+ FS+ E+A++A++EMNG+ + SKP
Sbjct: 429 TIDDEKLRNEFSSFGSIIRVKVMQQ-EGQSKGFGFICFSSLEDATKAMIEMNGRFLGSKP 487
Query: 376 LYVALAQ 382
+ +ALAQ
Sbjct: 488 ISIALAQ 494
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 160/281 (56%), Gaps = 16/281 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FSA G +LS ++ D + +S GY +V F AQKA++
Sbjct: 137 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALDT 196
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 197 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILS 252
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NG+ + +VG+ + + +RE EL+ +
Sbjct: 253 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRLLKSCKVFVGRFKNRKDREAELRSK 311
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D G S+G GFV
Sbjct: 312 --------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFV 361
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+
Sbjct: 362 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELK 402
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 187/366 (51%), Positives = 256/366 (69%), Gaps = 4/366 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL A+VT+ L+ F+ G V+S+R+CRD TRRSLGY YVNF + +A
Sbjct: 283 KYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQ 342
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG IL
Sbjct: 343 KALDTMNFDVIQGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRIL 402
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
S KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +Q+R+ E+
Sbjct: 403 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRS 461
Query: 200 --SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
S+FTNVY+KN +E L+ F +YG S VM D GKSK FGFV+F++ + A
Sbjct: 462 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAK 521
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVE +NG+ + + +V +AQKK ER+ ELK FEQ E Q LY+KNLDD+I
Sbjct: 522 KAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQVVKLYVKNLDDTI 581
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDEKL++ FS FGSI+ KVM++ G S+G G + FS+PE+A +A+ EMNG+++ SKPL
Sbjct: 582 DDEKLRKEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLS 640
Query: 378 VALAQR 383
+ALAQR
Sbjct: 641 IALAQR 646
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 102/281 (36%), Positives = 163/281 (58%), Gaps = 16/281 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FSA G +LS ++ D L +S GY +V F + AQKA++
Sbjct: 288 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALDT 347
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 348 MNFDVIQGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRILS 403
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 404 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRSK 462
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GFV
Sbjct: 463 --------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 512
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+F + E A +A+ EMNG+ + + ++VA AQ+K +R+A L+
Sbjct: 513 SFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELK 553
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 186/407 (45%), Positives = 270/407 (66%), Gaps = 34/407 (8%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 118 EELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 178 VAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 237
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ TE+D ++ F +YG +TS+ + RD +GKS+ FGFVNF + A++AV
Sbjct: 238 NFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAV 297
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFE-------QNMKEAADKFQGANLYIKNL 313
+ LN K F ++ YVG+AQKK ERE EL+ +E Q M + + +
Sbjct: 298 DELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARRGEGQQMNKECGSITSTKVMRETP 357
Query: 314 DDSIDDEKLK-QLFSPFGSITSCKVMRDPS------------------------GISRGS 348
+ ++++K K + +V +P G S+G
Sbjct: 358 TEVVEEKKEKAETVKENQEEVKDEVKEEPKEESKDETKEGEEDKKAEKKSDKKLGKSKGF 417
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
GFV FS P++A++A+ EMN +M KPLYVALAQRK+ R+++L+ +
Sbjct: 418 GFVCFSNPDDATKAVAEMNQRMFNGKPLYVALAQRKDVRKSQLEASI 464
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 184/376 (48%), Positives = 256/376 (68%), Gaps = 2/376 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVGDL +VT+ LYD F + + SVR+C+D ST RSL YGY NF + Q+A A+
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASTGRSLCYGYANFLSRQDANLAI 82
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E N + LNGK IRVM+S R+P R++G GN+F+KNL ++I + L D F FGNI+SCK
Sbjct: 83 EKKNHSLLNGKMIRVMWSVREPDARRNGVGNVFVKNLPESITNAVLQDMFKKFGNIVSCK 142
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
VAT +G+S+GYGFVQF+ E++A AIEKLN + K++YVG F++K +R + K+
Sbjct: 143 VATFEDGKSRGYGFVQFEQEDAAHAAIEKLNSTTVAGKEIYVGKFMKKTDRAKA--EEKY 200
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KNL E+ L++ F E+G I S + +D +G K + FVNF+ +DA A E
Sbjct: 201 TNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGYAFVNFDKPEDARWAAET 260
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NG +F K YVG+AQKK+ERE L+ QF++ +E K + +N+Y+KN++ + +E+L
Sbjct: 261 MNGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQMMKAKVSNIYVKNINVGVTEEEL 320
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS G+ITS K+M D G S+G GFV FSTPEEA A+ +GKM KPLYVA AQ
Sbjct: 321 RKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGKMFHGKPLYVATAQ 380
Query: 383 RKEDRRARLQVCLLQC 398
+KEDR+ +LQV C
Sbjct: 381 KKEDRKMQLQVQFGNC 396
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 363 bits (933), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 203/441 (46%), Positives = 273/441 (61%), Gaps = 64/441 (14%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
G G N F + SLYVGDL V + LY++FN +G V S+RVCRD TRRSLGY YVN+
Sbjct: 2 GVGGAPNSFTSASLYVGDLLPEVNEGLLYEIFNAVGPVASIRVCRDAVTRRSLGYAYVNY 61
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
A +A RAL+ +NFT + GKP R+M+S RDPS+R+SG GNIF+KNL + ID+K L+DTF
Sbjct: 62 HQAADAERALDSMNFTDIKGKPCRIMWSQRDPSVRRSGVGNIFVKNLHEGIDNKQLYDTF 121
Query: 133 SAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
S FGNILSCKV D G SKGYG+V ++ E+A AI+KL+GML++ K+V VG F+R
Sbjct: 122 SLFGNILSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKLDGMLIDGKEVQVGVFMR-- 179
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV----------------- 234
RDT ++ +TN+++KN+ ++ L+ F E+G I SA V
Sbjct: 180 -RDTRPDQEVYTNLFIKNMPYEWDDKRLEAEFAEFGEIVSASVKMGKRKKFAKKGKKAEA 238
Query: 235 ------MRDG----------------------------DGKSKCFGFVNFENSDDAARAV 260
DG + +S FGFVNF + AA AV
Sbjct: 239 KKDEDDKEDGAEDKPAEEEKPEEEEAKPAEEEAKPESTEPESLGFGFVNFATHEAAAAAV 298
Query: 261 EALNGKKFD--------DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
EA+N K + +K +VG+AQKKSER+ EL+ ++E E KFQG NLY+KN
Sbjct: 299 EAMNDKVYKVTEDGDEVEKALFVGRAQKKSERQAELRSKYEAEKMERIAKFQGVNLYVKN 358
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV 371
LDD++ D+ L+ F G+ITS K+MRD + SRG GFV FSTPE+A+RA+ EM+GK+V
Sbjct: 359 LDDAVTDDMLRDEFGGMGTITSAKIMRDAKTNNSRGFGFVCFSTPEDATRAVNEMSGKIV 418
Query: 372 VSKPLYVALAQRKEDRRARLQ 392
KP+YV+LAQR+E RRA+L+
Sbjct: 419 AGKPIYVSLAQRREVRRAQLE 439
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 88/164 (53%), Gaps = 23/164 (14%)
Query: 150 QSKGYGFVQFDNEESAQKAIEKLNGMLLN--------DKQVYVGHFLRKQERDTEINKSK 201
+S G+GFV F E+A A+E +N + +K ++VG +K ER E+ +SK
Sbjct: 279 ESLGFGFVNFATHEAAAAAVEAMNDKVYKVTEDGDEVEKALFVGRAQKKSERQAEL-RSK 337
Query: 202 F-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGF 247
+ N+YVKNL ++ T++ L+ FG GTITSA +MRD S+ FGF
Sbjct: 338 YEAEKMERIAKFQGVNLYVKNLDDAVTDDMLRDEFGGMGTITSAKIMRDAKTNNSRGFGF 397
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V F +DA RAV ++GK K YV AQ++ R +L+ Q
Sbjct: 398 VCFSTPEDATRAVNEMSGKIVAGKPIYVSLAQRREVRRAQLEAQ 441
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 187/370 (50%), Positives = 257/370 (69%), Gaps = 4/370 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TR SLGY YVNF + +A
Sbjct: 6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQ 65
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG IL
Sbjct: 66 KALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
S KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRS 184
Query: 200 --SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
S+FTNVY+KN +E L+ F +YG S VM D GKSK FGFV+F++ + A
Sbjct: 185 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAK 244
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVE +NG+ + + +V +AQKK ER+ ELK FEQ KE Q LY+KNLDD+I
Sbjct: 245 KAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQVVKLYVKNLDDTI 304
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A +A+ EMNG+++ SKPL
Sbjct: 305 DDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLS 363
Query: 378 VALAQRKEDR 387
+ALAQ E R
Sbjct: 364 IALAQCSELR 373
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 161/282 (57%), Gaps = 16/282 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FS G +LS ++ D + S GY +V F + AQKA++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALD 69
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I
Sbjct: 70 TMNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRS 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GF
Sbjct: 185 K--------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V+F + E A +A+ EMNG+ + + ++VA AQ+K +R+A L+
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELK 276
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 181/322 (56%), Positives = 241/322 (74%), Gaps = 5/322 (1%)
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RA++ +NF L+GKP+R+M+S RDP++R+SGAGNIFIKNLDK ID+K+++DTFS FGNIL
Sbjct: 25 RAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNIL 84
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
SCKVA D +G SKGYGFV F+ EE+AQ AI+K+NGMLL K+V+VG F + +R+ E+ +
Sbjct: 85 SCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGE 144
Query: 200 S--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+ +FTNVYVKN + +E L+K F ++G ITS VM +GKSK FGFV F N ++A
Sbjct: 145 TAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAE 203
Query: 258 RAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
AV+AL+ + D + +V +AQKKSER ELK + EQ+ E K+QG NLY+KNLD+
Sbjct: 204 TAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDE 263
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
++DD+ LK+ F +G+ITS KVM D +G S+G GFV F PEEA+ A+ EMN KMV SKP
Sbjct: 264 TVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKP 323
Query: 376 LYVALAQRKEDRRARLQVCLLQ 397
LYVA+AQRKEDRRA+L +Q
Sbjct: 324 LYVAIAQRKEDRRAQLASQYMQ 345
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 159/295 (53%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A A
Sbjct: 55 GAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNA 113
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
++ +N L GK + V + R R+ G N+++KN + + L F+ F
Sbjct: 114 IQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKF 173
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLRKQER 193
GNI SC+V T + G+SKG+GFV F N E A+ A++ L+ + D +++V +K ER
Sbjct: 174 GNITSCEVMT-VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSER 232
Query: 194 DTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K + N+YVKNL E+ ++ L+K F YG ITSA VM D +G+
Sbjct: 233 HAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGR 292
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV FE ++A AV +N K K YV AQ+K +R +L Q+ Q +
Sbjct: 293 SKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRL 347
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 183/378 (48%), Positives = 255/378 (67%), Gaps = 28/378 (7%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++Q
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRMERQNELKRRFEQMKQDRLRRYQ--------- 292
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
+ + P G + + ++PS F TP A+ A+ EMNG++V +
Sbjct: 293 ---LSRGPAQCWAWPVGRREAAQP-QEPS----------FPTP--AALAVTEMNGRIVGT 336
Query: 374 KPLYVALAQRKEDRRARL 391
KPLYVALAQRKE+R+A L
Sbjct: 337 KPLYVALAQRKEERKAIL 354
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 20/292 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRMERQNELK 277
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 182/393 (46%), Positives = 266/393 (67%), Gaps = 2/393 (0%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
MA V A + + ++ T SLYVGDL +VT+ LYD F + + SVR+C+D S
Sbjct: 1 MATVHAALHAADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDAS 60
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
+ RSL YGY NF + Q+A A+E N + LNGK IRVM+S R P R++G GN+F+KNL
Sbjct: 61 SGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLP 120
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
+++ + L D F FGNI+SCKVAT +G+S+GYGFVQF+ E++A AI+ LN ++ DK
Sbjct: 121 ESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADK 180
Query: 181 QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
++YVG F++K +R + K+TN+Y+KNL +E+ L++ F E+G I S + +D +
Sbjct: 181 EIYVGKFMKKTDRVKP--EEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR 238
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
+ + FVNF+N +DA RA E +NG KF K YVG+AQKK+ERE L+ QF++ +E
Sbjct: 239 LCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQK 298
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
+ +N+Y+KN++ ++ +E+L++ FS G+ITS K+M D G S+G GFV FSTPEEA
Sbjct: 299 MIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAI 358
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQV 393
A+ +G+M KPLYVA+AQ+KEDR+ +LQV
Sbjct: 359 DAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQV 391
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 163/292 (55%), Gaps = 15/292 (5%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
+A + G +++V +L +VT++ L D+F + G +VS +V L +S GYG+V F
Sbjct: 103 APDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQ 161
Query: 75 AQEAARALEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
A A++ LN T + K I V D + N+++KNLD + L + F
Sbjct: 162 EDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKF 221
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+ FG I+S +A D N +GY FV FDN E A++A E +NG K +YVG +K E
Sbjct: 222 AEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAE 281
Query: 193 RDTEINK------------SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
R+ + + +K +N+YVKN++ + TEE+L+K F + GTITS +M D G
Sbjct: 282 REQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKG 341
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
KSK FGFV F ++A AV+ +G+ F K YV AQKK +R+++L+ QF
Sbjct: 342 KSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQF 393
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 189/383 (49%), Positives = 268/383 (69%), Gaps = 12/383 (3%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+ C RSLGY YVNF +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSI-TCHP----RSLGYAYVNFLQLAD 58
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLD++ID+K L++ FSAFG
Sbjct: 59 AQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK 118
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D +G S+GY FV F N+ +A +AIE++NG LL D +++VG F +++R+ E
Sbjct: 119 ILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGTLLKDCRLFVGRFKSRKDREAEF 177
Query: 198 -NKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK+ +FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 178 QNKAHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 237
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A RAVE +NGK + + +VG+AQKK+ER+ ELK FEQ E + +GA LYIKNLD+
Sbjct: 238 AKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCRGAKLYIKNLDE 297
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FS FGSI+ KVM++ G S+G G + FS+ EEA++A+ EMNG+++ SKP
Sbjct: 298 TIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTEMNGRILGSKP 356
Query: 376 LYVALAQRKEDRRARLQVCLLQC 398
L +ALAQ+ +R+ C+ QC
Sbjct: 357 LNIALAQKPXERKT---FCISQC 376
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 357 bits (915), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 185/385 (48%), Positives = 255/385 (66%), Gaps = 20/385 (5%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + SLYVGDL T++ LYD F+Q G V+S+RVCRD+ TRRSLGY YVNF ++
Sbjct: 5 APSYPMASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPED 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RA++ +NF L+ + S K + K FSAFGN
Sbjct: 65 AERAIDTMNFIQLSVNLASAISSS---------------KTWTRLSTTKCCTIPFSAFGN 109
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV +L G+SKGYGFV F+ EE+A KAIEKL+GML+NDK+V+VG F + ER E
Sbjct: 110 ILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREY 169
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNV++KNL + L + FGE+G++ S + D +GKS+ FGFV+FE +
Sbjct: 170 GDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHEC 229
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A + VE L+ K+F+ K+ +VG+AQKK+ER+ ELK +FE+ E ++QG NLY+KNLDD
Sbjct: 230 AEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDD 289
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDP---SGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
SI D+ L++ F+P+G+ITS KVM D S+G GFV F++ EEA++A+ EMNG+++
Sbjct: 290 SITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIA 349
Query: 373 SKPLYVALAQRKEDRRARLQVCLLQ 397
SKPLYVALAQRK++R+A LQ +Q
Sbjct: 350 SKPLYVALAQRKDERKAHLQQQYMQ 374
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 162/296 (54%), Gaps = 31/296 (10%)
Query: 44 FNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHR 102
F+ G ++S +V +L+ S GYG+V+F + A +A+E L+ +N K + V + R
Sbjct: 104 FSAFGNILSCKVNVNLAGE-SKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSR 162
Query: 103 DPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
+R+ G N+FIKNL D L + F G+++S +ATD NG+S+ +GFV
Sbjct: 163 GERVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFV 222
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TN 204
F+ E A+K +EKL+ K+++VG +K ER E+ K KF N
Sbjct: 223 SFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAEL-KVKFEKLKHERNQRYQGVN 281
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD---GKSKCFGFVNFENSDDAARAVE 261
+YVKNL +S T++ L++ F YG ITS+ VM D D +SK FGFV F ++++A +AV
Sbjct: 282 LYVKNLDDSITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVT 341
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE-------AADKFQGANLYI 310
+NG+ K YV AQ+K ER+ L+ Q+ Q + ++ Q NLY+
Sbjct: 342 EMNGRIIASKPLYVALAQRKDERKAHLQQQYMQRVTTGMRLQAFPTNQPQYGNLYM 397
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 357 bits (915), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 183/371 (49%), Positives = 254/371 (68%), Gaps = 3/371 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ VT+ L +F+ MG + +V +CR T RSL YGYVNF +A +AL
Sbjct: 20 SLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKALSN 79
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN T L GK +R+M+ R+P RKSG GN+++KNLD +ID L FS FG ILSCKV
Sbjct: 80 LNHTYLKGKLMRIMWCQRNPCARKSGIGNLYVKNLDASIDSAGLQSLFSKFGTILSCKVV 139
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT--EINKSKF 202
+ +G+SKGYGFVQFD+E+SA A L+ +L +K++YV F++K ER T ++ KF
Sbjct: 140 EE-HGKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSRFVKKSERTTATSYDELKF 198
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+YVKNLS+ T++ F +G I SAV+M+D +GKS+ FGFV+FE+ +DA +AV+A
Sbjct: 199 TNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDA 258
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LNG + + + +VG+AQ K+ER+ L+H+++ +KF+ +NLY+KNL ID++KL
Sbjct: 259 LNGYQLESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNLALCIDNDKL 318
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++LFS G I S KVMR +G SRG GFV FS+PEEA +AL +NG + K LYVA+AQ
Sbjct: 319 QELFSCSGKIVSAKVMRYDNGASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQ 378
Query: 383 RKEDRRARLQV 393
K DR+ LQ
Sbjct: 379 CKRDRQLALQT 389
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 162/294 (55%), Gaps = 22/294 (7%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + G +LYV +L+A++ + L LF++ G ++S +V + +S GYG+V F +
Sbjct: 101 ARKSGIGNLYVKNLDASIDSAGLQSLFSKFGTILSCKVVEEHG--KSKGYGFVQFDSEDS 158
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHD 130
A A L+ T L K + V + S R + N+++KNL K + A H+
Sbjct: 159 ALAARTALHDTMLKEKKLYVSRFVKK-SERTTATSYDELKFTNLYVKNLSKDMTQDAFHN 217
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
FSAFG I+S + D NG+S+G+GFV F++ E A+KA++ LNG L + ++VG K
Sbjct: 218 MFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDALNGYQLESRTLFVGRAQAK 277
Query: 191 QER------------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
ER +T + K K +N+YVKNL+ + LQ+ F G I SA VMR
Sbjct: 278 AERKKILQHEYKDIFNTHMEKFKASNLYVKNLALCIDNDKLQELFSCSGKIVSAKVMRYD 337
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+G S+ FGFV F + ++A +A+ ALNG F K YV AQ K +R+L L+ F
Sbjct: 338 NGASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQCKRDRQLALQTYF 391
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR-DPSGISRGSGFVAF 353
++K D +LY+ +LD + + L+ +FS G I + + R +G S G+V F
Sbjct: 8 SLKLPGDPRPRLSLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNF 67
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A +AL +N + K + + QR R
Sbjct: 68 YRPYDAYKALSNLNHTYLKGKLMRIMWCQRNPCAR 102
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 172/292 (58%), Positives = 226/292 (77%), Gaps = 4/292 (1%)
Query: 87 FTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD 146
F + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D
Sbjct: 1 FFVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 60
Query: 147 LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SKFTN 204
NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER E+ +FTN
Sbjct: 61 ENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERGAEMGARAKEFTN 119
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VY+KN E +E L++ F +YG S VM D GKSK FGFV+FE +DA RAV+ +N
Sbjct: 120 VYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMN 179
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD +DDE+L++
Sbjct: 180 GKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 239
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPL
Sbjct: 240 EFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 290
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/267 (38%), Positives = 159/267 (59%), Gaps = 29/267 (10%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 24 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 81
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA---------GNIFIKNLDKAIDHKALHDTF 132
+E +N LN + + + R S ++ GA N++IKN + +D + L + F
Sbjct: 82 IEKMNGMLLNDRKV---FVGRFKSRKERGAEMGARAKEFTNVYIKNFGEDMDDEKLKEIF 138
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S +G LS +V TD +G+SKG+GFV F+ E AQ+A++++NG +N KQVYVG +K E
Sbjct: 139 SKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGE 198
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R TE+ K KF N+YVKNL + +E L+K F +GTITSA VM +G
Sbjct: 199 RQTEL-KRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG- 256
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGK 266
G+SK FGFV F + ++A +AV +NG+
Sbjct: 257 GRSKGFGFVCFSSPEEATKAVTEMNGR 283
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE
Sbjct: 15 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 73
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A RA+E +NG +D++ +VG+ + + ER E M A +F N+YIK
Sbjct: 74 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKERGAE--------MGARAKEF--TNVYIK 123
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N + +DDEKLK++FS +G S +VM D SG S+G GFV+F E+A RA+ EMNGK +
Sbjct: 124 NFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEM 183
Query: 372 VSKPLYVALAQRKEDRRARLQ 392
K +YV AQ+K +R+ L+
Sbjct: 184 NGKQVYVGRAQKKGERQTELK 204
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 103/185 (55%), Gaps = 22/185 (11%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L ++F++ G +S+RV D S + S G+G+V+F
Sbjct: 111 GARAKEF--TNVYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGK-SKGFGFVSFER 167
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A RA++ +N +NGK + V + + D R G N+++K
Sbjct: 168 HEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGV-NLYVK 226
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD +D + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 227 NLDDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 285
Query: 178 NDKQV 182
K +
Sbjct: 286 ATKPL 290
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 176/346 (50%), Positives = 240/346 (69%), Gaps = 4/346 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVGDL ++VTD+QLY F++ ++S RVC+D +T +SL YGYVN S+ QEA RA+E+
Sbjct: 16 TLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIEL 75
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N + LNGK IRVM+ RD RKSG GN+F+KNL +ID+ LHD F +GNILS K+A
Sbjct: 76 KNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIA 135
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+G+SKG+G++QFD+EESA AI+K+NG + DKQ+YVG F+RK ER +KFTN
Sbjct: 136 RSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLDAKFTN 195
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YVKNL TE+ L + F +G I S + +D +G+SK FGFVN+++ DDA RA+EA++
Sbjct: 196 LYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMD 255
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G +F K YV +AQKK ERE L H F E K G+N+Y+KN+D S+ DE+L+
Sbjct: 256 GSQFGSKILYVARAQKKVEREQILHHLFV----EKGLKHMGSNIYVKNIDTSVGDEELRD 311
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
FS G + S KVMRD G S+G GFV FST EA +++ NG++
Sbjct: 312 HFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGEL 357
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 159/295 (53%), Gaps = 19/295 (6%)
Query: 105 SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEE 163
++ S A +++ +L + L+ FS F ++S +V D G+S YG+V + +
Sbjct: 8 AVPASPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQ 67
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A +AIE N LN K + V RD + KS NV+VKNL+ S L F
Sbjct: 68 EAIRAIELKNHSSLNGKVIRVMWL----SRDADARKSGKGNVFVKNLAASIDNVGLHDLF 123
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+YG I S+ + R DGKSK FG++ F++ + A A++ +NG DK+ YVGK +KSE
Sbjct: 124 QKYGNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSE 183
Query: 284 REL-ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
R L +L +F NLY+KNLD + ++ L + FS FG I S + +D +
Sbjct: 184 RSLPDLDAKF-------------TNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDEN 230
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
G S+G GFV + +P++A RA+ M+G SK LYVA AQ+K +R L ++
Sbjct: 231 GQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVEREQILHHLFVE 285
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 15/166 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LYV +L+ VT+ L + F+ G++VS+ + +D +S G+G+VN+ + +A RA+E
Sbjct: 194 TNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKD-ENGQSKGFGFVNYDSPDDARRAME 252
Query: 84 MLNFTPLNGKPIRVMYSHR-------------DPSLRKSGAGNIFIKNLDKAIDHKALHD 130
++ + K + V + + + L+ G+ NI++KN+D ++ + L D
Sbjct: 253 AMDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGS-NIYVKNIDTSVGDEELRD 311
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
FSA G +LS KV D G SKG+GFV F A K++ NG L
Sbjct: 312 HFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGEL 357
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
K+A A LY+ +L + D +L + FS F ++ S +V +D +G S G+V S+
Sbjct: 6 KDAVPASPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSS 65
Query: 356 PEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+EA RA+ N + K + V R D R
Sbjct: 66 HQEAIRAIELKNHSSLNGKVIRVMWLSRDADAR 98
>gi|157823445|ref|NP_001099899.1| polyadenylate-binding protein 4-like [Rattus norvegicus]
gi|149027259|gb|EDL82942.1| rCG37805 [Rattus norvegicus]
Length = 370
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 184/367 (50%), Positives = 256/367 (69%), Gaps = 4/367 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
++ SLYVGDL +VT+ L+ FN +G V+S+R+CRDL + RSLGYGYVNF +A
Sbjct: 5 TKYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDA 64
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
+ALE +NF + GK IR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FS FG I
Sbjct: 65 QKALETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKI 124
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
+S KV TD G SKGYGFV + ++ +A +AIE++NG LL D ++V F +++R+ E+
Sbjct: 125 MSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELR 183
Query: 199 K--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+ ++FTNVY+KN + +E L+ F +YG S VM+D GKSK FGFV+F++ A
Sbjct: 184 EKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAA 243
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
AVE +NG+ + + +VG+AQKK ER+ ELK FEQ KE Q A LYIKNLDD+
Sbjct: 244 KNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDT 303
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
IDDE L++ FS FGSI KVM++ +G S+G G + F +PE A++A+ EMNG+++ SKPL
Sbjct: 304 IDDETLRKEFSVFGSICRVKVMQE-AGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPL 362
Query: 377 YVALAQR 383
+AL Q+
Sbjct: 363 NIALGQK 369
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 165/290 (56%), Gaps = 16/290 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAI 169
A ++++ +L + + L F+ G +LS ++ DL + +S GYG+V F AQKA+
Sbjct: 9 AASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKAL 68
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E +N L+ K + L +RD + KS NV++KNL +S + L + F +G I
Sbjct: 69 ETMNFDLIKGKSIR----LMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKI 124
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S+ VM D +G SK +GFV++++ A RA+E +NGK D +V + + + +RE EL+
Sbjct: 125 MSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELR 183
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
E +F N+YIKN D +DDE L+ +FS +G S KVM+D SG S+ G
Sbjct: 184 --------EKPAEF--TNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFG 233
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
FV+F + + A A+ +MNG+ + + ++V AQ+K +R+A L+ Q +
Sbjct: 234 FVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMK 283
>gi|432118841|gb|ELK38215.1| Polyadenylate-binding protein 5 [Myotis davidii]
Length = 382
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 186/358 (51%), Positives = 242/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPETRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDEVDDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKL++
Sbjct: 261 GKSIDGKALYVGRAQKKIERLAELRRRFERLKVKEKSRPPGVPVYIKNLDETIDDEKLRE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG+MV SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEEATKAVGEMNGRMVGSKPLHVTLGQ 377
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 152/278 (54%), Gaps = 15/278 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPETRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK++FS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDEVDDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
T E A +A+L+++GK + K LYV AQ+K +R A L+
Sbjct: 248 THEAAQKAVLDLHGKSIDGKALYVGRAQKKIERLAELR 285
>gi|392927774|ref|NP_510259.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
gi|371570799|emb|CAA90446.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
Length = 575
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 175/317 (55%), Positives = 231/317 (72%), Gaps = 4/317 (1%)
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF ++G+P+R+M+S RDP+ R++G GNIFIKNLD+ ID+K+++DTFS FGNILSCKVA
Sbjct: 1 MNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVA 60
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
TD G SKGYGFV F+ E SAQ AIEK+NGMLL+DK+VYVG F + +R E+ +S K+
Sbjct: 61 TDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKY 120
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNV+VKN E +E L F ++G ITSAVVM D GK K FGFV F + D A +AVE
Sbjct: 121 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 180
Query: 263 LNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN + D + V +AQKKSER ELK ++E +E ++QG NLY+KN+++ ++D+
Sbjct: 181 LNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDD 240
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L+ FS FG+ITS KVM D +G S+G GFV F PEEA+ A+ +MN KM+ +KPLYVAL
Sbjct: 241 GLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVAL 300
Query: 381 AQRKEDRRARLQVCLLQ 397
AQRKEDRRA+L +Q
Sbjct: 301 AQRKEDRRAQLASQYMQ 317
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 21/299 (7%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F
Sbjct: 22 ARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATD-DEGNSKGYGFVHFETEHS 80
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDT 131
A A+E +N L+ K + V + R L +SG N+F+KN + +D + L
Sbjct: 81 AQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAM 140
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLR 189
FS FG I S V TD G+ KG+GFV F ++++A +A+EKLN +L D ++ V +
Sbjct: 141 FSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQK 200
Query: 190 KQERDTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K ER E + + + N+YVKN+ E ++ L+ F +GTITSA VM D
Sbjct: 201 KSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVD 260
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+G+SK FGFV FE ++A AV +N K K YV AQ+K +R +L Q+ Q +
Sbjct: 261 ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRL 319
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 184/366 (50%), Positives = 258/366 (70%), Gaps = 4/366 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL +VT+ L+ FN +G V+S+R+CRDL +RRSLGY YVNF +A
Sbjct: 6 KYRAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQ 65
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FS FG IL
Sbjct: 66 KALDTMNFDLIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIL 125
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
S KV +D G S+GYGFV + ++ +A +AIE++NG LL D V+V F +++R+ E+
Sbjct: 126 SSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDREAELRS 184
Query: 200 --SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
S+FTNVY+KNL ++ +E L+ F +YG S VM+D +GKSK FGFV+F N + A
Sbjct: 185 KTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKGFGFVSFYNHEAAR 244
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
AVE +NG+ + + +VG+AQKK ER+ ELK +FEQ KE Q A LYIKNLD++I
Sbjct: 245 NAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRARQAAKLYIKNLDETI 304
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE L++ FS FGSI KVM++ +G S+G G + F +PE A++A+ EMNG+++ SK L
Sbjct: 305 DDETLRREFSSFGSICRVKVMQE-AGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKALN 363
Query: 378 VALAQR 383
+AL Q+
Sbjct: 364 IALGQK 369
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 165/286 (57%), Gaps = 16/286 (5%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQ 166
K A ++++ +L + + L F+ G +LS ++ DL + +S GY +V F + AQ
Sbjct: 6 KYRAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQ 65
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY 226
KA++ +N L+ K + L +RD + KS NV++KNL +S + L + F +
Sbjct: 66 KALDTMNFDLIQGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPF 121
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G I S+ VM D +G S+ +GFV++++ A RA+E +NGK D +V + + + +RE
Sbjct: 122 GKILSSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDREA 180
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
EL+ + + N+YIKNL D++DDE LK +FS +G S KVM+D +G S+
Sbjct: 181 ELRSKTSE----------FTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSK 230
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G GFV+F E A A+ EMNG+ + + ++V AQ+K +R+A L+
Sbjct: 231 GFGFVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELK 276
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 167/296 (56%), Positives = 230/296 (77%), Gaps = 2/296 (0%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+S RDPSLRK G+GNIFIKNL ID+KAL+DTFS FG+ILS K+ATD NG+SKG+GFV
Sbjct: 1 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 60
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--FTNVYVKNLSESTT 215
F+ E +A++AI+ LNGMLLN +++YV L ++ERD+++ ++K +TN+YVKN++ TT
Sbjct: 61 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 120
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+E Q+ F ++G I SA + +D DGK K FGFVN+E +DA +AVEALN + + ++ YV
Sbjct: 121 DEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 180
Query: 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
G+AQKK+ER LK Q+E E K+QG NL++KNLDDS+DDEKL++ F+P+G+ITS
Sbjct: 181 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSA 240
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
KVMR +G S+G GFV FSTPEEA++A+ E N ++V KPLYVA+AQRK+ RR++L
Sbjct: 241 KVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQL 296
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 161/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L ++ + LYD F+ G ++S ++ D +S G+G+V+F A A
Sbjct: 13 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEA 71
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ LN LNG+ I V RD L ++ A N+++KN++ + + F+ F
Sbjct: 72 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKF 131
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG---------H 186
G I+S + D +G+ KG+GFV ++ E A KA+E LN LN +++YVG H
Sbjct: 132 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMH 191
Query: 187 FLRKQE---RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
L+KQ R ++ K + N++VKNL +S +E L++ F YGTITSA VMR +GKSK
Sbjct: 192 VLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSK 251
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 252 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 301
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
N++IKNL ID++ L FS FG I S K+ D +G S+G GFV F A A+
Sbjct: 15 GNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDA 74
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARLQ 392
+NG ++ + +YVA +++R ++L+
Sbjct: 75 LNGMLLNGQEIYVAPHLSRKERDSQLE 101
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ +V D +L + F G + S +V R +S G+G+V FS +EA +A+
Sbjct: 211 VNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEATKAIT 269
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 270 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 304
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 168/296 (56%), Positives = 229/296 (77%), Gaps = 2/296 (0%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+S RDPSLRK G+GNIFIKNL ID+KAL+DTFS FG+ILS K+ATD NG+SKG+GFV
Sbjct: 1 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 60
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--FTNVYVKNLSESTT 215
F+ E +A++AI+ LNGMLLN +++YV L ++ERD+++ ++K +TN+YVKN++ TT
Sbjct: 61 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 120
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+E Q F ++G I SA + +D DGK K FGFVN+EN +DA +AVEALN + ++ YV
Sbjct: 121 DEQFQDLFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYV 180
Query: 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
G+AQKK+ER LK Q+E E K+QG NL++KNLDDS+DDEKL++ F+P+G+ITS
Sbjct: 181 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSA 240
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
KVMR +G S+G GFV FSTPEEA++A+ E N ++V KPLYVA+AQRK+ RR++L
Sbjct: 241 KVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQL 296
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 161/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L ++ + LYD F+ G ++S ++ D +S G+G+V+F A A
Sbjct: 13 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEA 71
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ LN LNG+ I V RD L ++ A N+++KN++ + D F F
Sbjct: 72 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQDLFIQF 131
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG---------H 186
G I+S + D +G+ KG+GFV ++N E A KA+E LN LN +++YVG H
Sbjct: 132 GPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMH 191
Query: 187 FLRKQE---RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
L+KQ R ++ K + N++VKNL +S +E L++ F YGTITSA VMR +GKSK
Sbjct: 192 VLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRTENGKSK 251
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 252 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 301
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
N++IKNL ID++ L FS FG I S K+ D +G S+G GFV F A A+
Sbjct: 15 GNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDA 74
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARLQ 392
+NG ++ + +YVA +++R ++L+
Sbjct: 75 LNGMLLNGQEIYVAPHLSRKERDSQLE 101
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ +V D +L + F G + S +V R +S G+G+V FS +EA +A+
Sbjct: 211 VNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEATKAIT 269
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 270 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 304
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 179/313 (57%), Positives = 232/313 (74%), Gaps = 4/313 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+ G V+ +RVCRD+ TRRSLGY YVNF +A R
Sbjct: 13 YPMASLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 73 ALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CK+ D +G S+GYGFV F+ EE+A+ AIEK+NGMLLN K+V+VG F+ ++ER +
Sbjct: 133 CKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDK 191
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR-DGDGKSKCFGFVNFENSDDAA 257
KF NVYVKN SE +E L+ F YG I SA VM DG GK K FGFV+FE+ + A
Sbjct: 192 MRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAE 251
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVEALNG K YVG+AQKK ER+ ELK +FE+ E +++QG NLY+KNLDD+I
Sbjct: 252 KAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKNLDDNI 311
Query: 318 DDEKLKQLFSPFG 330
DDE+L++ F+ FG
Sbjct: 312 DDERLRKEFAQFG 324
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 154/283 (54%), Gaps = 17/283 (6%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L + FS G +L +V D+ +S GY +V F A++A++
Sbjct: 16 ASLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAERALD 75
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N + + + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 76 TMNFDTIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 131
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S ++ D G S+ +GFV+FE + A A+E +NG + K+ +VG+ + ER LE+
Sbjct: 132 SCKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRER-LEV-- 187
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSG 349
+ + KF N+Y+KN + I+DE L+ +F P+G I S KVM D SG +G G
Sbjct: 188 -----LGDKMRKFN--NVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFG 240
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
FV+F PE A +A+ +NG K LYV AQ+K +R+A L+
Sbjct: 241 FVSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELK 283
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 179/366 (48%), Positives = 255/366 (69%), Gaps = 4/366 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL +VT+ L+ F+ +G V+S+R+CRDL ++RSLGY YVNF +A
Sbjct: 6 KYRAASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQ 65
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+AL +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FS FG I+
Sbjct: 66 KALVTMNFDVIKGKSIRLMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIM 125
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-- 197
S KV TD G SKGYGFV + + +A +AIE++NG LL + ++V F +++R+ E+
Sbjct: 126 SSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAELRD 184
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
++FTNVY+KN + +E L++ F +YG S VM+D GKSK FGFV+F++ + A
Sbjct: 185 KPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAK 244
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
AVE +NG+ + + +VG+AQKK ER+ ELK FEQ KE Q A LYIKNLDD+I
Sbjct: 245 NAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTI 304
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE L++ FS FGSI KVM++ +G S+G G + F +PE A++A+ EMNG+++ SKPL
Sbjct: 305 DDETLRKEFSVFGSICRVKVMQE-AGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLN 363
Query: 378 VALAQR 383
+AL Q+
Sbjct: 364 IALGQK 369
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 167/293 (56%), Gaps = 16/293 (5%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQ 166
K A ++++ +L + + L FS G +LS ++ DL Q S GY +V F AQ
Sbjct: 6 KYRAASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQ 65
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY 226
KA+ +N ++ K + L +RD + +S NV++KNL +S + L + F +
Sbjct: 66 KALVTMNFDVIKGKSIR----LMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPF 121
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
GTI S+ VM DG+G SK +GFV++++ A RA+E +NGK + +V + + + +RE
Sbjct: 122 GTIMSSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREA 180
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
EL+ + + N+YIKN D +DDEKL+++FS +G S KVM+D +G S+
Sbjct: 181 ELRDK----------PTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSK 230
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
G GFV+F + E A A+ +MNG+ + + ++V AQ+K +R+A L+ Q +
Sbjct: 231 GFGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMK 283
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 187/362 (51%), Positives = 246/362 (67%), Gaps = 5/362 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+LYVGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL
Sbjct: 3 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 62
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF +NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV
Sbjct: 63 TMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 122
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKS 200
D NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++
Sbjct: 123 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRA 181
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNV+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV
Sbjct: 182 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV 241
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
L+GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DE
Sbjct: 242 LDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDE 301
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK+ FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L
Sbjct: 302 KLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 360
Query: 381 AQ 382
Q
Sbjct: 361 GQ 362
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 152/277 (54%), Gaps = 15/277 (5%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKL 172
+++ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +
Sbjct: 5 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 64
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N L+N K L + D + KS N+++KNL +S L F +G I S
Sbjct: 65 NFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 120
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 121 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR- 178
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV
Sbjct: 179 --------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 230
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
+ T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 231 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 267
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 168/288 (58%), Positives = 225/288 (78%), Gaps = 4/288 (1%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCK+ +D +G S+GYGFV
Sbjct: 1 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFV 59
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTT 215
F+ EE+A+ AIEK+NGMLLN K+V+VG F+ ++ER ++ KF NVY+KN SE
Sbjct: 60 HFETEEAARNAIEKVNGMLLNGKKVFVGRFMNRRERLEQMGDKMKKFNNVYIKNFSEEID 119
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+E L+ F +G I SA VM DGK + FGFV++E + A +AV +N K F++K YV
Sbjct: 120 DEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYV 179
Query: 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
G+AQK++ER+ ELK +F++ +E +++QG NLY+KNLDDSIDDEKL++ FS FG+ITS
Sbjct: 180 GRAQKRAERQAELKDKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSA 239
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
KVM + G S+G GFV FS+PEEA++A+ EMNG+++V+KPLYVALAQR
Sbjct: 240 KVMTE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIIVAKPLYVALAQR 286
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 158/277 (57%), Gaps = 21/277 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S ++ D R GYG+V+F + A A
Sbjct: 13 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHGSR--GYGFVHFETEEAARNA 70
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + +R L + G N++IKN + ID + L F F
Sbjct: 71 IEKVNGMLLNGKKVFVGRFMNRRERLEQMGDKMKKFNNVYIKNFSEEIDDEKLKIWFETF 130
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I+S KV T +G+ +G+GFV ++ E+A+KA+ ++N +K +YVG ++ ER
Sbjct: 131 GKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGRAQKRAERQA 190
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM +G G+SK
Sbjct: 191 ELKDKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSAKVMTEG-GRSK 249
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
FGFV F + ++A +AV +NG+ K YV AQ+
Sbjct: 250 GFGFVCFSSPEEATKAVTEMNGRIIVAKPLYVALAQR 286
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 114/201 (56%), Gaps = 11/201 (5%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS NV++KNL +S + L +F +G I S ++ D G S+ +GFV+FE
Sbjct: 4 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFVHFE 62
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A A+E +NG + K+ +VG+ + ER EQ M + KF N+YIK
Sbjct: 63 TEEAARNAIEKVNGMLLNGKKVFVGRFMNRRER-------LEQ-MGDKMKKFN--NVYIK 112
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N + IDDEKLK F FG I S KVM G RG GFV++ PE A +A+ EMN K
Sbjct: 113 NFSEEIDDEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTF 172
Query: 372 VSKPLYVALAQRKEDRRARLQ 392
K LYV AQ++ +R+A L+
Sbjct: 173 EEKTLYVGRAQKRAERQAELK 193
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 185/361 (51%), Positives = 241/361 (66%), Gaps = 5/361 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L+K F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K VG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS FGSI+ KVM + G +G G V FS+ EEAS+A+ EMNG++V SK L+V L Q +
Sbjct: 321 EFSLFGSISRAKVMME-VGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQAR 379
Query: 385 E 385
Sbjct: 380 H 380
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 151/278 (54%), Gaps = 15/278 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D IDDEKLK+LFS +G S KV+RD +G S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
T E A +A+LE++GK + K L V AQ+K +R A L+
Sbjct: 248 THEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELR 285
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 188/358 (52%), Positives = 242/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD T LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
LNGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLLNGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNL + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSIDGKILYVGRAQKKIERLAELRRRFERLRLKDKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FSPFGSI+ KVM + G +G G V FS+ EEA++A+ EMNG+ V SKPL+V L Q
Sbjct: 321 EFSPFGSISRAKVMME-VGQGKGFGVVCFSSFEEAAKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LLN K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLLNGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KNL D +DDEKLK+LFS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKILYVGRAQKKIERLA 282
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 173/313 (55%), Positives = 234/313 (74%), Gaps = 6/313 (1%)
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+E+LN+ L GKP+R+M+S RDPS R SG GN+F+KNLD++ID+K L D FSAFG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KVA D +G SKGYGFVQF ++ S A NG L+ ++ ++V F+ + + D KS+
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWD----KSR 116
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKNL E+ T+ DL++ FGE+G ITSAVVM+DG+GKS+ FGFVNFE ++ A A+
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFE-QNMKEAADKFQGANLYIKNLDDSIDD 319
E +NG D+KE +VG+AQ+K+ R +LK +FE + + +G NLY+KNLDDS+D+
Sbjct: 177 EKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
KL++LFS FG+ITSCKVM +GIS+G GFV FST EEAS+A+L+MNGKMV +KP+YV+
Sbjct: 237 TKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Query: 380 LAQRKEDRRARLQ 392
LAQ KE + LQ
Sbjct: 297 LAQCKEQHKLHLQ 309
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 159/291 (54%), Gaps = 27/291 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + QL D+F+ G+V+S +V RD S S GYG+V F + A
Sbjct: 29 GRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGV-SKGYGFVQFYSDLSVYTA 87
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA------GNIFIKNLDKAIDHKALHDTFSAF 135
NF NG IR + H P + + N+++KNL + L F F
Sbjct: 88 C---NFH--NGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEF 142
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S V D G+S+ +GFV F+ E+A AIEK+NG+++++K+++VG RK R T
Sbjct: 143 GEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR-T 201
Query: 196 EINKSKF--------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E K+KF N+YVKNL +S L++ F E+GTITS VM +G
Sbjct: 202 EDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGI 261
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
SK GFV F S++A++A+ +NGK +K YV AQ K + +L L+ QF
Sbjct: 262 SKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQF 312
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 188/358 (52%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+A+VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDADVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++ L FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRGLFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNL + +E L++ F EYG I S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYETHEAAQKAVLELH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD+SIDDEKLK+
Sbjct: 261 GKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SK L+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRLVGSKALHVTLGQ 377
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 152/275 (55%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDADVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRGLFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KNL D ++DEKLK+LFS +G I S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+LE++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLELHGKSMDGKVLYVGRAQKKIERLA 282
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 102/178 (57%), Gaps = 20/178 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+++V +L ++ D +L +LF++ GQ+ SV+V RD S +S G+G+V + + A +A+
Sbjct: 199 TNVFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASG-KSKGFGFVKYETHEAAQKAVL 257
Query: 84 MLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHK 126
L+ ++GK + V + + R G I+IKNLD++ID +
Sbjct: 258 ELHGKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGV-PIYIKNLDESIDDE 316
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
L + FS+FG+I KV ++ GQ KG+G V F + E A KA++++NG L+ K ++V
Sbjct: 317 KLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRLVGSKALHV 373
>gi|29336045|ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]
gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus]
gi|76827669|gb|AAI07363.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|76828194|gb|AAI07364.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|148701502|gb|EDL33449.1| poly A binding protein, cytoplasmic 5 [Mus musculus]
Length = 381
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 183/358 (51%), Positives = 237/358 (66%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK ID++AL FSAFGNILSCKV D
Sbjct: 81 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDD 140
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN---KSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ ++ FTN
Sbjct: 141 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRERATFTN 199
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L K F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 200 VFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELH 259
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K VG+AQKK ER EL+ +FE+ + ++ G +YIKNLD++I+DEKLK+
Sbjct: 260 GKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSGVPIYIKNLDETINDEKLKE 319
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA +A+ EMNG+++ SK L+V L Q
Sbjct: 320 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEACKAVDEMNGRIIGSKTLHVTLGQ 376
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 150/278 (53%), Gaps = 15/278 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL ++ L F +G I S V
Sbjct: 81 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKV 136
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 137 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 192
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
++ N+++KN D IDDEKL +LFS +G S KV+RD +G S+G GFV +
Sbjct: 193 ------ERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYE 246
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
T E A +A+LE++GK + K L V AQ+K +R A L+
Sbjct: 247 THEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELR 284
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 173/297 (58%), Positives = 228/297 (76%), Gaps = 2/297 (0%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+S RDPS R+SG GNIFIKNL AID+KALHDTFSAFG ILSCKVATD GQSK +GFV
Sbjct: 1 MWSQRDPSSRRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDDMGQSKCFGFV 60
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTT 215
++ E+A+ AIE +NGMLLND++VYVG + K++R+++ K+ +TN+YVKN+ +
Sbjct: 61 HYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANYTNIYVKNIDLEFS 120
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+E+ +K F +GTITS + +D DGKSK FGFVN+E + A +AVE LN K+ + ++ YV
Sbjct: 121 DEEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYV 180
Query: 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
G+AQKK ER ELK Q+E E K+QG NL++KNLDDSID EKL++ F PFGSITS
Sbjct: 181 GRAQKKRERMEELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSA 240
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
KVM D +G S+G GFV FS+PEEA++A+ EMN +M++ KPLYVALAQRK+ RR++L+
Sbjct: 241 KVMVDEAGKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYVALAQRKDVRRSQLE 297
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 162/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + L+D F+ G+++S +V D +S +G+V++ A+ A A
Sbjct: 13 GDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-DMGQSKCFGFVHYETAEAAEAA 71
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V S +D + K+ NI++KN+D + F F
Sbjct: 72 IENVNGMLLNDREVYVGKHISKKDRESKFEEMKANYTNIYVKNIDLEFSDEEFEKLFVPF 131
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + D +G+SKG+GFV ++ ESA KA+E+LN +N +++YVG +K+ER
Sbjct: 132 GTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYVGRAQKKRERME 191
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K SK+ N++VKNL +S E L++ F +G+ITSA VM D GKSK
Sbjct: 192 ELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSAKVMVDEAGKSK 251
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F + ++A +A+ +N + K YV AQ+K R +L+ Q +
Sbjct: 252 GFGFVCFSSPEEATKAITEMNQRMILGKPLYVALAQRKDVRRSQLEQQIQ 301
>gi|296235923|ref|XP_002763106.1| PREDICTED: polyadenylate-binding protein 5 [Callithrix jacchus]
gi|14571652|emb|CAC42812.1| Poly(A)-binding protein cytoplasmic 5 [Callithrix jacchus]
Length = 382
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 186/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ E +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ + IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK V K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLA 282
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 186/358 (51%), Positives = 242/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 149/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK+LFS +G S KV+RD G S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSMDGKVLYVGRAQKKIERLA 282
>gi|397478151|ref|XP_003810419.1| PREDICTED: polyadenylate-binding protein 5-like [Pan paniscus]
Length = 382
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 186/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEAS+A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEASKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|380503877|ref|NP_001244114.1| polyadenylate-binding protein 5 [Equus caballus]
Length = 382
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L++ F EYG+ S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRAPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG+++ SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEEATKAVDEMNGRIMGSKPLHVTLGQ 377
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 151/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK++FS +GS S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|354499752|ref|XP_003511970.1| PREDICTED: polyadenylate-binding protein 5-like [Cricetulus
griseus]
gi|344240775|gb|EGV96878.1| Polyadenylate-binding protein 5 [Cricetulus griseus]
Length = 382
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 181/361 (50%), Positives = 238/361 (65%), Gaps = 5/361 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL VT+ LY F G + R+CRD T LGYGYVNF +A AL +NF
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIK+LDK+ID++ L FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNL ++ +E L++ F EYG S V+RD GKSK FGFV +E + A ++V L+
Sbjct: 201 VFVKNLGDNMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKSVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKTIDGKVLYVGRAQKKIERLAELRRRFERLKLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS FGSI+ KVM + G +G V FS+ EEA++A+ EMNG ++ SKPL V L Q +
Sbjct: 321 EFSSFGSISRAKVMME-MGQGKGFAVVCFSSFEEATKAVDEMNGPVLGSKPLSVTLGQAR 379
Query: 385 E 385
Sbjct: 380 H 380
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 151/278 (54%), Gaps = 15/278 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +L + L+ F G + ++ D S GYG+V F A+ A+ +N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++K+L +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KNL D++DDEKLK+LFS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNLGDNMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
T E A +++L+++GK + K LYV AQ+K +R A L+
Sbjct: 248 THEAAQKSVLDLHGKTIDGKVLYVGRAQKKIERLAELR 285
>gi|113461967|ref|NP_001038193.1| polyadenylate-binding protein 5 [Macaca mulatta]
gi|402910717|ref|XP_003918003.1| PREDICTED: polyadenylate-binding protein 5 [Papio anubis]
gi|50400917|sp|Q7JGR2.1|PABP5_MACMU RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta]
gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin]
gi|90082100|dbj|BAE90331.1| unnamed protein product [Macaca fascicularis]
gi|355704969|gb|EHH30894.1| Polyadenylate-binding protein 5 [Macaca mulatta]
gi|355757521|gb|EHH61046.1| Polyadenylate-binding protein 5 [Macaca fascicularis]
Length = 382
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|18201888|ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]
gi|115392093|ref|NP_001065269.1| polyadenylate-binding protein 5 [Pan troglodytes]
gi|332239776|ref|XP_003269075.1| PREDICTED: polyadenylate-binding protein 5 [Nomascus leucogenys]
gi|426396593|ref|XP_004064521.1| PREDICTED: polyadenylate-binding protein 5-like [Gorilla gorilla
gorilla]
gi|28201851|sp|Q96DU9.1|PABP5_HUMAN RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502886|sp|P60047.1|PABP5_GORGO RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502887|sp|P60048.1|PABP5_HYLLA RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502888|sp|P60049.1|PABP5_PANTR RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502889|sp|P60050.1|PABP5_PONPY RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla]
gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar]
gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus]
gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes]
gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens]
gi|38649270|gb|AAH63113.1| Poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|119623181|gb|EAX02776.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|158261233|dbj|BAF82794.1| unnamed protein product [Homo sapiens]
gi|208968659|dbj|BAG74168.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|312151110|gb|ADQ32067.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|410208314|gb|JAA01376.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
gi|410305648|gb|JAA31424.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
Length = 382
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|291407988|ref|XP_002720199.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Oryctolagus
cuniculus]
Length = 382
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 242/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV +D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVSDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
+G SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 HG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD+SI DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESISDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGHGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 149/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VSDDHG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK+LFS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|403295651|ref|XP_003938748.1| PREDICTED: polyadenylate-binding protein 5 [Saimiri boliviensis
boliviensis]
Length = 382
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMLE-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|197097448|ref|NP_001126434.1| polyadenylate-binding protein 5 [Pongo abelii]
gi|55731438|emb|CAH92432.1| hypothetical protein [Pongo abelii]
Length = 382
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 184/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFG+ILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGDILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGDILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|348570452|ref|XP_003471011.1| PREDICTED: polyadenylate-binding protein 5-like [Cavia porcellus]
Length = 382
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 184/358 (51%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ VT+ LY F G + R+CRD T LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID+++L FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRSLFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +K+ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRFKFPEERAAEVRTRDKATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNL + +E L+ F EYG S ++RD GKSK FGFV +E D A +AV L+
Sbjct: 201 VFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRYETHDAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++ID+EKLK+
Sbjct: 261 GKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDEEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G + FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSAFGSISRAKVMME-VGQGKGFGVICFSSFEEATKAVEEMNGRLVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 149/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRSLFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
DK N+++KNL D +DDEKLK LFS +G S K++RD SG S+G GFV +
Sbjct: 194 ------DKATFTNVFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T + A +A+L+++GK V K LYV AQ+K +R A
Sbjct: 248 THDAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLA 282
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 98/178 (55%), Gaps = 20/178 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+++V +L ++ D +L LF++ GQ SV++ RD S +S G+G+V + A +A+
Sbjct: 199 TNVFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASG-KSKGFGFVRYETHDAAQKAVL 257
Query: 84 MLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHK 126
L+ ++GK + V + + R G I+IKNLD+ ID +
Sbjct: 258 DLHGKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGV-PIYIKNLDETIDEE 316
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
L + FSAFG+I KV ++ GQ KG+G + F + E A KA+E++NG L+ K ++V
Sbjct: 317 KLKEEFSAFGSISRAKVMMEV-GQGKGFGVICFSSFEEATKAVEEMNGRLVGSKPLHV 373
>gi|300796236|ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]
gi|296471041|tpg|DAA13156.1| TPA: poly(A) binding protein, cytoplasmic 5 [Bos taurus]
gi|440903676|gb|ELR54310.1| Polyadenylate-binding protein 5 [Bos grunniens mutus]
Length = 382
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 184/358 (51%), Positives = 241/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFG+ILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +K+ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + ++ L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G + FS+ EEA++A+ EMNG++V SKPL V L Q
Sbjct: 321 EFSSFGSISRAKVMVE-VGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 151/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G+I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
DK N+++KN D +DD+KLK+LFS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 167/312 (53%), Positives = 228/312 (73%), Gaps = 4/312 (1%)
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+EMLNF L GKP+R+M+S RDPS R SG GN+F+KNLD++ID+K L D FSAFG +LSC
Sbjct: 1 MEMLNFYKLKGKPMRIMFSERDPSKRLSGRGNVFVKNLDESIDNKQLSDMFSAFGKVLSC 60
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KV D +G SKGYGFVQF +E S A NG L+ ++ ++V F+ +++ D
Sbjct: 61 KVVRDASGVSKGYGFVQFYSELSVNIACNVRNGTLIRNQHIHVSPFVSRRQWD---ESRV 117
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL+E+TT++DL+ F E+G ITSAVVM+D +GKS+ FGFVNFE ++ A A++
Sbjct: 118 FTNVYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAID 177
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFE-QNMKEAADKFQGANLYIKNLDDSIDDE 320
+NG D+KE +VG+AQ+K R +LK F+ + +K +G NLY+KNLD S+D+
Sbjct: 178 KMNGTIVDEKELHVGRAQRKKNRIQDLKVIFKLEKIKRDMKTRKGTNLYVKNLDYSVDNT 237
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LFS FG+I SCKVM P+ IS+G GFV FST EEAS+A+L+MNGK+V +KP+YV+L
Sbjct: 238 KLQELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLKMNGKVVGNKPIYVSL 297
Query: 381 AQRKEDRRARLQ 392
AQ KE+ + L
Sbjct: 298 AQCKEEHKLHLH 309
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 152/290 (52%), Gaps = 25/290 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + QL D+F+ G+V+S +V RD S S GYG+V F + A
Sbjct: 29 GRGNVFVKNLDESIDNKQLSDMFSAFGKVLSCKVVRDASGV-SKGYGFVQFYSELSVNIA 87
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA------GNIFIKNLDKAIDHKALHDTFSAF 135
+ N G IR + H P + + N+++KNL + L F F
Sbjct: 88 CNVRN-----GTLIRNQHIHVSPFVSRRQWDESRVFTNVYVKNLAETTTDDDLKMIFEEF 142
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER-- 193
G I S V D G+S+ +GFV F+ E+A AI+K+NG ++++K+++VG RK+ R
Sbjct: 143 GEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAIDKMNGTIVDEKELHVGRAQRKKNRIQ 202
Query: 194 -----------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
++ K TN+YVKNL S LQ+ F E+GTI S VM + S
Sbjct: 203 DLKVIFKLEKIKRDMKTRKGTNLYVKNLDYSVDNTKLQELFSEFGTIISCKVMVHPNRIS 262
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
K GFV F S++A++A+ +NGK +K YV AQ K E +L L QF
Sbjct: 263 KGVGFVEFSTSEEASKAMLKMNGKVVGNKPIYVSLAQCKEEHKLHLHTQF 312
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 100/204 (49%), Gaps = 15/204 (7%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
ERD S NV+VKNL ES + L F +G + S V+RD G SK +GFV F
Sbjct: 20 ERDPSKRLSGRGNVFVKNLDESIDNKQLSDMFSAFGKVLSCKVVRDASGVSKGYGFVQFY 79
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A NG ++ +V S R+ + F N+Y+K
Sbjct: 80 SELSVNIACNVRNGTLIRNQHIHVSPFV--SRRQWDESRVF-------------TNVYVK 124
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NL ++ D+ LK +F FG ITS VM+D G SR GFV F E A A+ +MNG +V
Sbjct: 125 NLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAIDKMNGTIV 184
Query: 372 VSKPLYVALAQRKEDRRARLQVCL 395
K L+V AQRK++R L+V
Sbjct: 185 DEKELHVGRAQRKKNRIQDLKVIF 208
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 110/214 (51%), Gaps = 19/214 (8%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +L TD L +F + G++ S V +D + + +G+VNF A+ A A++
Sbjct: 119 TNVYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRM-FGFVNFEKAEAAVTAID 177
Query: 84 MLNFTPLNGKPIRVMYSHRDPS-----------------LRKSGAGNIFIKNLDKAIDHK 126
+N T ++ K + V + R + ++ N+++KNLD ++D+
Sbjct: 178 KMNGTIVDEKELHVGRAQRKKNRIQDLKVIFKLEKIKRDMKTRKGTNLYVKNLDYSVDNT 237
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
L + FS FG I+SCKV N SKG GFV+F E A KA+ K+NG ++ +K +YV
Sbjct: 238 KLQELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLKMNGKVVGNKPIYVSL 297
Query: 187 FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
K+E ++ ++F N+ +S + Q
Sbjct: 298 AQCKEEHKLHLH-TQFNNLPWNVVSSTIAPSPHQ 330
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 167/281 (59%), Positives = 219/281 (77%), Gaps = 4/281 (1%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+FIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGY FV F+ +E+A KAIEK+
Sbjct: 1 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 59
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
NG+LLND++V+VG F ++ER+ E+ K+K FTNVY+KN E + +L++ F ++G
Sbjct: 60 NGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 119
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S VMRD GKS+ FGFV++E +DA +AV+ +NGK+ K +VG+AQKK ER+ ELK
Sbjct: 120 SVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELKR 179
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+FEQ +E ++QG NLYIKNLDD+IDDEKL++ FSPFGSITS KVM + G S+G GF
Sbjct: 180 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGF 238
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
V F + EEA++A+ EMNG++V SKPLYVALAQRKE+R+A L
Sbjct: 239 VCFPSREEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHL 279
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 168/290 (57%), Gaps = 23/290 (7%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A+E +
Sbjct: 2 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 59
Query: 86 NFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNIL 139
N LN + + V + R + GA N++IKN + +D L + FS FG L
Sbjct: 60 NGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 119
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
S KV D +G+S+G+GFV ++ E A KA++++NG ++ K ++VG +K ER E+ K
Sbjct: 120 SVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAEL-K 178
Query: 200 SKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK FG
Sbjct: 179 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 237
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q++
Sbjct: 238 FVCFPSREEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQHV 287
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 119/189 (62%), Gaps = 11/189 (5%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NV++KNL +S + L +F +G I S V+ D +G SK + FV+FE + A +A+E +
Sbjct: 1 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 59
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NG +D++ +VG+ + + ERE EL + A +F N+YIKN + +DD LK
Sbjct: 60 NGLLLNDRKVFVGRFKSRKEREAELGAK--------AKEF--TNVYIKNFGEEVDDGNLK 109
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+LFS FG S KVMRD SG SRG GFV++ E+A++A+ EMNGK + K ++V AQ+
Sbjct: 110 ELFSQFGKTLSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQK 169
Query: 384 KEDRRARLQ 392
K +R+A L+
Sbjct: 170 KVERQAELK 178
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 123/213 (57%), Gaps = 25/213 (11%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + V D L +LF+Q G+ +SV+V RD S+ +S G+G+V++
Sbjct: 85 GAKAKEF--TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSRGFGFVSYEK 141
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSH----RDPSLRKS------------GAGNIFIKN 118
++A +A++ +N ++GK I V + R L++ N++IKN
Sbjct: 142 HEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN 201
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LD ID + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 202 LDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFPSREEATKAVTEMNGRIVG 260
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER K+ TN Y+++++
Sbjct: 261 SKPLYVALAQRKEER-----KAHLTNQYMQHVA 288
>gi|281345691|gb|EFB21275.1| hypothetical protein PANDA_019324 [Ailuropoda melanoleuca]
Length = 381
Score = 333 bits (854), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 184/358 (51%), Positives = 239/358 (66%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L++ F YG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK + K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG+ V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 149/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL + L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK++FS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|301787589|ref|XP_002929210.1| PREDICTED: polyadenylate-binding protein 5-like [Ailuropoda
melanoleuca]
Length = 382
Score = 333 bits (854), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 184/358 (51%), Positives = 239/358 (66%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L++ F YG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK + K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG+ V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 149/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL + L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK++FS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 183/358 (51%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTKDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L++ F YG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK + K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ E+A++A+ EMNG+ V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTK--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK++FS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|426257905|ref|XP_004022562.1| PREDICTED: polyadenylate-binding protein 5-like [Ovis aries]
Length = 382
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 184/360 (51%), Positives = 242/360 (67%), Gaps = 9/360 (2%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFG+ILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + ++ L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKTRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGF--VAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + + +G GF V FS+ EEA++A+ EMNG++V SKPL V L Q
Sbjct: 321 EFSSFGSISRAKVMVE---VEQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 151/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G+I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DD+KLK+LFS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|74008013|ref|XP_549122.2| PREDICTED: polyadenylate-binding protein 5 [Canis lupus familiaris]
Length = 382
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 183/360 (50%), Positives = 240/360 (66%), Gaps = 5/360 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN +E L++ F YG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK + K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS FGSI+ KVM + G +G G V FS+ E+A++A+ EMNG+ V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQAR 379
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN + +DDEKLK++FS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|401430030|ref|XP_003879497.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495747|emb|CBZ31053.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 564
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 169/379 (44%), Positives = 246/379 (64%), Gaps = 18/379 (4%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
S+YVGDL+A + + QL +LF G +++VRVCRD+ T+RSLGYGYVNF N + A +A+E
Sbjct: 25 ASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHESAEKAIE 84
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + K +R+M+ RDP+LR SG GN+F+KNL+K +D K+LHD F+ FG+ILSCKV
Sbjct: 85 SMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML----LNDKQVYVGHFLRKQERDTEINK 199
D G+S+GYGFV F +E SA+ AI K+NG + K +YV +F+R+ R +
Sbjct: 145 MQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAAL-V 203
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+ FTNVY+K + + ++E ++K F ++G ITSA +D G + F F NFE DDA +A
Sbjct: 204 ANFTNVYIKQVLPTVSKEVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 260 VEALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
VEA++ D ++ YV +AQ +SER + L+ ++ Q+ G NLY++N D
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQS------LGNNLYVRNFD 315
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
L +LF +G + SC+VM SG SRG GFV+FS +EA+ AL EMNG+M+ K
Sbjct: 316 PEFTGADLLELFKEYGDVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLNGK 375
Query: 375 PLYVALAQRKEDRRARLQV 393
PL V +AQR++ R L++
Sbjct: 376 PLIVNIAQRRDQRYTMLRL 394
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 148/294 (50%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +LE +V L+D+F + G ++S +V +D +S GYG+V+F + A A
Sbjct: 111 GNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQD-EEGKSRGYGFVHFKDETSAKDA 169
Query: 82 LEMLN----FTPLNGKPIRVM-YSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSA 134
+ +N + K + V + R+ L A N++IK + + + + F+
Sbjct: 170 IVKMNGAADHASEDKKALYVANFIRRNARLAALVANFTNVYIKQVLPTVSKEVIEKFFAK 229
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE-----KLNGMLLNDKQVYVGHFLR 189
FG I S D +G + + F F+ + A KA+E ++G+ +++YV
Sbjct: 230 FGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQP 287
Query: 190 KQERDTEI------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ ER + ++S N+YV+N T DL + F EYG + S VM G S+
Sbjct: 288 RSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLELFKEYGDVKSCRVMVSESGASR 347
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
FGFV+F N+D+A A+ +NG+ + K V AQ++ +R L+ QF+Q ++
Sbjct: 348 GFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQQRLQ 401
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 23/197 (11%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARA 259
+ ++YV +L + E L + F +GTI + V RD +S +G+VNF+N + A +A
Sbjct: 23 QIASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHESAEKA 82
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG-ANLYIKNLDDSID 318
+E++N K+ DK ++ ++Q ++ A ++ G N+++KNL+ +D
Sbjct: 83 IESMNFKRVGDK---------------CVRLMWQQ--RDPALRYSGNGNVFVKNLEKDVD 125
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS----K 374
+ L +F+ FGSI SCKVM+D G SRG GFV F A A+++MNG + K
Sbjct: 126 SKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKK 185
Query: 375 PLYVALAQRKEDRRARL 391
LYVA R+ R A L
Sbjct: 186 ALYVANFIRRNARLAAL 202
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 330 bits (846), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 159/271 (58%), Positives = 212/271 (78%), Gaps = 4/271 (1%)
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 59
Query: 183 YVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+VG F ++ER+ E+ +FTNVY+KN E +E L++ FG++G S VM D G
Sbjct: 60 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 119
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++
Sbjct: 120 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 179
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA+
Sbjct: 180 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 238
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
+A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 239 KAVTEMNGRIVATKPLYVALAQRKEERQAHL 269
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 164/281 (58%), Gaps = 23/281 (8%)
Query: 35 VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94
+ + LYD F+ G ++S +V D + S GYG+V+F + A RA+E +N LN +
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 58
Query: 95 IRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN 148
+ V + R + GA N++IKN + +D + L + F FG LS KV TD +
Sbjct: 59 VFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES 118
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF------ 202
G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE+ K KF
Sbjct: 119 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL-KRKFEQMKQD 177
Query: 203 -------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
N+YVKNL + +E L+K F +GTITSA VM +G G+SK FGFV F + ++
Sbjct: 178 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEE 236
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 237 ATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 277
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 108/174 (62%), Gaps = 11/174 (6%)
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L +F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+
Sbjct: 6 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 64
Query: 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVM 338
+ + ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM
Sbjct: 65 KSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM 114
Query: 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 115 TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 168
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF + G +SV+V D S +S G+G+V+F
Sbjct: 75 GARAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG-KSKGFGFVSFER 131
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 132 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 190
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 191 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 249
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 250 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 278
>gi|389595349|ref|XP_003722897.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
gi|323364125|emb|CBZ13132.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
Length = 560
Score = 330 bits (846), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 168/379 (44%), Positives = 246/379 (64%), Gaps = 18/379 (4%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
S+YVGDL+A + + QL +LF G +++VRVCRD+ T+RSLGYGYVNF N A +A+E
Sbjct: 25 ASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIE 84
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + K +R+M+ RDP+LR SG GN+F+KNL+K +D K+LHD F+ FG+ILSCKV
Sbjct: 85 SMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML----LNDKQVYVGHFLRKQERDTEINK 199
D G+S+GYGFV F +E SA+ AI K+NG + K +YV +F+R+ R +
Sbjct: 145 MQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAAL-V 203
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+ FTNVY+K + + ++ ++K F ++G ITSA +D G + F F NFE DDA +A
Sbjct: 204 ANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 260 VEALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
VEA++ D ++ YV +AQ +SER + L+ ++ Q+ + G NLY++N D
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQH------QALGNNLYVRNFD 315
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
L +LF +G + SC+VM SG+SRG GFV+FS +EA+ AL EMNG+M+ K
Sbjct: 316 PEFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGK 375
Query: 375 PLYVALAQRKEDRRARLQV 393
PL V +AQR++ R L++
Sbjct: 376 PLIVNIAQRRDQRYTMLRL 394
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 146/294 (49%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +LE +V L+D+F + G ++S +V +D +S GYG+V+F + A A
Sbjct: 111 GNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQD-EEGKSRGYGFVHFKDETSAKDA 169
Query: 82 LEMLN----FTPLNGKPIRVM-YSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSA 134
+ +N + K + V + R+ L A N++IK + ++ + F+
Sbjct: 170 IVKMNGAADHASEDKKALYVANFIRRNARLAALVANFTNVYIKQVLPTVNKDVIEKFFAK 229
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE-----KLNGMLLNDKQVYVGHFLR 189
FG I S D +G + + F F+ + A KA+E ++G+ +++YV
Sbjct: 230 FGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQP 287
Query: 190 KQERDTEINKSKF------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ ER + + N+YV+N T DL + F EYG + S VM G S+
Sbjct: 288 RSERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESGVSR 347
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
FGFV+F N+D+A A+ +NG+ + K V AQ++ +R L+ QF+Q ++
Sbjct: 348 GFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQQRLQ 401
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 23/197 (11%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARA 259
+ ++YV +L + E L + F +GTI + V RD +S +G+VNF+N D A +A
Sbjct: 23 QIASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKA 82
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG-ANLYIKNLDDSID 318
+E++N K+ DK ++ ++Q ++ A ++ G N+++KNL+ +D
Sbjct: 83 IESMNFKRVGDK---------------CVRLMWQQ--RDPALRYSGNGNVFVKNLEKDVD 125
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS----K 374
+ L +F+ FGSI SCKVM+D G SRG GFV F A A+++MNG + K
Sbjct: 126 SKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKK 185
Query: 375 PLYVALAQRKEDRRARL 391
LYVA R+ R A L
Sbjct: 186 ALYVANFIRRNARLAAL 202
>gi|389603137|ref|XP_001568596.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505742|emb|CAM43715.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 554
Score = 330 bits (845), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 170/378 (44%), Positives = 243/378 (64%), Gaps = 18/378 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S+YVGDL+A + + QL +LF G +++VRVCRD+ T+RSLGYGYVNF N A RA+E
Sbjct: 26 SIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHHSAERAIES 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + K +R+M+ RDPSLR SG GN+F+KNL+K +D K+LHD F+ FG+ILSCKV
Sbjct: 86 MNFRRVGDKCVRLMWQQRDPSLRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVM 145
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGML----LNDKQVYVGHFLRKQERDTEINKS 200
D G+S+GYGFV F +E SA+ AI K+NG + K +YV +F+R+ R + +
Sbjct: 146 EDEEGKSRGYGFVHFKDEISAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAAL-VA 204
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+K + + +E ++ F ++G ITSA +D G + F F NFE DDA +AV
Sbjct: 205 NFTNVYIKQVLPTVNKEVIENFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAV 262
Query: 261 EALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
EA++ D ++ YV +AQ +SER + L+ ++ Q+ G NLY++N D
Sbjct: 263 EAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQS------LGNNLYVRNFDP 316
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
L +LF +G + SC+VM SG SRG GFV+FS +EA+ AL EMNG+M+ KP
Sbjct: 317 EFTGADLLELFKEYGDVKSCRVMMSESGASRGFGFVSFSNADEANAALREMNGRMLNGKP 376
Query: 376 LYVALAQRKEDRRARLQV 393
L V +AQR++ R L++
Sbjct: 377 LIVNIAQRRDQRYTMLRL 394
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 148/304 (48%), Gaps = 41/304 (13%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS-------- 73
G +++V +LE +V L+D+F + G ++S +V D +S GYG+V+F
Sbjct: 111 GNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMED-EEGKSRGYGFVHFKDEISAKDA 169
Query: 74 ---------NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
+A E +AL + NF N + ++ + N++IK + ++
Sbjct: 170 IVKMNGAADHASEDKKALYVANFIRRNARLAALV----------ANFTNVYIKQVLPTVN 219
Query: 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE-----KLNGMLLND 179
+ + + F+ FG I S D +G + + F F+ + A KA+E ++G+
Sbjct: 220 KEVIENFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPG 277
Query: 180 KQVYVGHFLRKQERDTEI------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
+++YV + ER + ++S N+YV+N T DL + F EYG + S
Sbjct: 278 EKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLELFKEYGDVKSCR 337
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
VM G S+ FGFV+F N+D+A A+ +NG+ + K V AQ++ +R L+ QF+
Sbjct: 338 VMMSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQ 397
Query: 294 QNMK 297
Q ++
Sbjct: 398 QRLQ 401
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 23/197 (11%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARA 259
+ ++YV +L + E L + F +GTI + V RD +S +G+VNF+N A RA
Sbjct: 23 QIASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHHSAERA 82
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG-ANLYIKNLDDSID 318
+E++N ++ DK ++ ++Q ++ + ++ G N+++KNL+ +D
Sbjct: 83 IESMNFRRVGDK---------------CVRLMWQQ--RDPSLRYSGNGNVFVKNLEKDVD 125
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS----K 374
+ L +F+ FGSI SCKVM D G SRG GFV F A A+++MNG + K
Sbjct: 126 SKSLHDIFTKFGSILSCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKMNGAADHASEDKK 185
Query: 375 PLYVALAQRKEDRRARL 391
LYVA R+ R A L
Sbjct: 186 ALYVANFIRRNARLAAL 202
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTP 356
+ + Q A++Y+ +LD +I++ +L +LF PFG+I + +V RD + S G G+V F
Sbjct: 17 QVSKPMQIASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNH 76
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
A RA+ MN + V K + + QR R
Sbjct: 77 HSAERAIESMNFRRVGDKCVRLMWQQRDPSLR 108
>gi|339899318|ref|XP_001469326.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|398023903|ref|XP_003865113.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
gi|321398770|emb|CAM72432.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|322503349|emb|CBZ38434.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
Length = 560
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 169/379 (44%), Positives = 244/379 (64%), Gaps = 18/379 (4%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
S+YVGDL+A + + QL +LF G +++VRVCRD+ T+RSLGYGYVNF N A +A+E
Sbjct: 25 ASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIE 84
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + K +R+M+ RDP+LR SG GN+F+KNL+K +D K+LHD F+ FG+ILSCKV
Sbjct: 85 SMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML----LNDKQVYVGHFLRKQERDTEINK 199
D G+S+GYGFV F +E SA+ AI K+NG + K +YV +F+R+ R +
Sbjct: 145 MQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAAL-V 203
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+ FTNVY+K + + +E ++K F ++G ITSA +D G + F F NFE DDA +A
Sbjct: 204 ANFTNVYIKQVLPTVNKEVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 260 VEALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
VEA++ D ++ YV +AQ +SER + L+ ++ Q+ G NLY++N D
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQS------LGNNLYVRNFD 315
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
L +LF +G + SC+VM SG SRG GFV+FS +EA+ AL EMNG+M+ K
Sbjct: 316 PEFTGADLLELFKEYGEVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLNGK 375
Query: 375 PLYVALAQRKEDRRARLQV 393
PL V +AQR++ R L++
Sbjct: 376 PLIVNIAQRRDQRYTMLRL 394
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 149/294 (50%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +LE +V L+D+F + G ++S +V +D +S GYG+V+F + A A
Sbjct: 111 GNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQD-EEGKSRGYGFVHFKDETSAKDA 169
Query: 82 LEMLN----FTPLNGKPIRVM-YSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSA 134
+ +N + K + V + R+ L A N++IK + ++ + + F+
Sbjct: 170 IVKMNGAADHASEDKKALYVANFIRRNARLAALVANFTNVYIKQVLPTVNKEVIEKFFAK 229
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE-----KLNGMLLNDKQVYVGHFLR 189
FG I S D +G + + F F+ + A KA+E ++G+ +++YV
Sbjct: 230 FGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQP 287
Query: 190 KQERDTEI------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ ER + ++S N+YV+N T DL + F EYG + S VM G S+
Sbjct: 288 RSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESGASR 347
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
FGFV+F N+D+A A+ +NG+ + K V AQ++ +R L+ QF+Q ++
Sbjct: 348 GFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQQRLQ 401
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 23/197 (11%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARA 259
+ ++YV +L + E L + F +GTI + V RD +S +G+VNF+N D A +A
Sbjct: 23 QIASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKA 82
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG-ANLYIKNLDDSID 318
+E++N K+ DK ++ ++Q ++ A ++ G N+++KNL+ +D
Sbjct: 83 IESMNFKRVGDK---------------CVRLMWQQ--RDPALRYSGNGNVFVKNLEKDVD 125
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS----K 374
+ L +F+ FGSI SCKVM+D G SRG GFV F A A+++MNG + K
Sbjct: 126 SKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKK 185
Query: 375 PLYVALAQRKEDRRARL 391
LYVA R+ R A L
Sbjct: 186 ALYVANFIRRNARLAAL 202
>gi|6019464|gb|AAC64372.2| polyadenylate-binding protein 1 [Leishmania major]
Length = 560
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 171/391 (43%), Positives = 250/391 (63%), Gaps = 26/391 (6%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
S+YVGDL+A + + QL +LF G +++VRVCRD+ T+RSLGYGYVNF N A +A+E
Sbjct: 25 ASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIE 84
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + K +R+M+ RDP+LR SG GN+F+KNL+K +D K+LHD F+ FG+ILSCKV
Sbjct: 85 SMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML----LNDKQVYVGHFLRKQERDTEINK 199
D G+S+GYGFV F +E SA+ AI K+NG + K +YV +F+R+ R +
Sbjct: 145 MQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAAL-V 203
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+ FTNVY+K + + ++ ++K F ++G ITSA +D G + F F NFE DDA +A
Sbjct: 204 ANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 260 VEALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
VEA++ D ++ YV +AQ +SER + L+ ++ Q+ + G NLY++N D
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQH------QALGNNLYVRNFD 315
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
L +LF +G + SC+VM SG+SRG GFV+FS +EA+ AL EMNG+M+ K
Sbjct: 316 PEFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGK 375
Query: 375 PLYVALAQRKEDR--------RARLQVCLLQ 397
PL V +AQR++ R + RLQ+ + Q
Sbjct: 376 PLIVNIAQRRDQRYTIVRLQFQQRLQMMMRQ 406
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +LE +V L+D+F + G ++S +V +D +S GYG+V+F + A A
Sbjct: 111 GNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQD-EEGKSRGYGFVHFKDETSAKDA 169
Query: 82 LEMLN----FTPLNGKPIRVM-YSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSA 134
+ +N + K + V + R+ L A N++IK + ++ + F+
Sbjct: 170 IVKMNGAADHASEDKKALYVANFIRRNARLAALVANFTNVYIKQVLPTVNKDVIEKFFAK 229
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE-----KLNGMLLNDKQVYVGHFLR 189
FG I S D +G + + F F+ + A KA+E ++G+ +++YV
Sbjct: 230 FGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQP 287
Query: 190 KQERDTEINKSKF------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ ER + + N+YV+N T DL + F EYG + S VM G S+
Sbjct: 288 RSERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESGVSR 347
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
FGFV+F N+D+A A+ +NG+ + K V AQ++ +R ++ QF+Q ++
Sbjct: 348 GFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTIVRLQFQQRLQ 401
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 23/197 (11%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARA 259
+ ++YV +L + E L + F +GTI + V RD +S +G+VNF+N D A +A
Sbjct: 23 EIASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKA 82
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG-ANLYIKNLDDSID 318
+E++N K+ DK ++ ++Q ++ A ++ G N+++KNL+ +D
Sbjct: 83 IESMNFKRVGDK---------------CVRLMWQQ--RDPALRYSGNGNVFVKNLEKDVD 125
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS----K 374
+ L +F+ FGSI SCKVM+D G SRG GFV F A A+++MNG + K
Sbjct: 126 SKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKK 185
Query: 375 PLYVALAQRKEDRRARL 391
LYVA R+ R A L
Sbjct: 186 ALYVANFIRRNARLAAL 202
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 327 bits (837), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 154/275 (56%), Positives = 202/275 (73%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL V+DS L F+++G V+S RVCRDL+TR+SLGYGYVNF + + A +ALE
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+LN+ PL G+PIR+M+S RDPSLRKSG GNIFIKNLDK+I+ K L+DTFS FG ILSCK+
Sbjct: 73 VLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKI 132
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
D NGQSKGYGFV F+ EE A++AIEK+N M++ D+ VYVG F+ K ER ++ K KF
Sbjct: 133 VMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN 192
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+YVKN T E L++ F E+G I SA VM+D +GKSK FGFV + + D A AV +
Sbjct: 193 NLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTM 252
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+GK+ + + Y +AQ+K ER+ ELK + E+ E
Sbjct: 253 HGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAE 287
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 160/281 (56%), Gaps = 17/281 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + AL FS G +LS +V DL QS GYG+V F++ + A++A+E
Sbjct: 14 SLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEV 73
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L + + + +RD + KS N+++KNL +S +++L +F +G I S
Sbjct: 74 LNYEPLMGRPIRIMW----SQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
++ D +G+SK +GFV+FE + A RA+E +N D+ YVGK K+ER
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTER------- 182
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
K A K + NLY+KN D+EKLK++FS FG I S VM+D G S+G GFV
Sbjct: 183 -----KSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+ P+ A A+ M+GK + + LY A AQRKE+R+ L+
Sbjct: 238 CYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEELK 278
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 100/185 (54%), Gaps = 11/185 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ +LYD F+ G+++S ++ D +S GYG+V+F + A RA
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERA 157
Query: 82 LEMLNFTPLNGKPIRVMY-------SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+E +N + RV+Y + R RK N+++KN D++ L + FS
Sbjct: 158 IEKINNMIIRD---RVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNEKLKEMFSE 214
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG I S V D G+SKG+GFV + + + A+ A+ ++G + + +Y RK+ER
Sbjct: 215 FGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQ 274
Query: 195 TEINK 199
E+ +
Sbjct: 275 EELKQ 279
>gi|431922856|gb|ELK19640.1| Polyadenylate-binding protein 5 [Pteropus alecto]
Length = 373
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 181/355 (50%), Positives = 236/355 (66%), Gaps = 8/355 (2%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYV 207
NG SKGY +V FD+ +A +AI +NG+ LN++QVY +R ++R T FTNV+V
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYRAAEVRTRDRAT------FTNVFV 194
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KN + +E L+ F EYG S V+RD GKSK FGFV +E + A +AV L+GK
Sbjct: 195 KNFGDDMDDEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKS 254
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+ FS
Sbjct: 255 IDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPVYIKNLDETIDDEKLKEEFS 314
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FGSI+ KVM + G +G G V +S+ EEA++A+ EMNG+++ SKPL+V L Q
Sbjct: 315 SFGSISRAKVMVE-VGQGKGFGVVCYSSFEEATKAVDEMNGRIMGSKPLHVTLGQ 368
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 144/275 (52%), Gaps = 24/275 (8%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ Y R E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVY---------RAAEVRTR--- 184
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK +FS +G S KV+RD SG S+G GFV +
Sbjct: 185 ------DRATFTNVFVKNFGDDMDDEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRYE 238
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 239 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 273
>gi|194386842|dbj|BAG59787.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 179/346 (51%), Positives = 234/346 (67%), Gaps = 5/346 (1%)
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
LY F G + R+CRD TR LGYGYVNF +A AL +NF +NGKP R+M+
Sbjct: 2 LYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMW 61
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D NG SKGY +V F
Sbjct: 62 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHF 120
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTNVYVKNLSESTTE 216
D+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTNV+VKN+ + +
Sbjct: 121 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDD 180
Query: 217 EDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276
E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+GK D K YVG
Sbjct: 181 EKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 240
Query: 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+ FS FGSI+ K
Sbjct: 241 RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAK 300
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
VM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 301 VMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 345
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 145/263 (55%), Gaps = 15/263 (5%)
Query: 128 LHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
L+ F G + ++ D +S GYG+V F A+ A+ +N L+N K
Sbjct: 2 LYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFR--- 58
Query: 187 FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
L + D + KS N+++KNL +S L F +G I S V+ D +G SK +
Sbjct: 59 -LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYA 116
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
+V+F++ A RA+ +NG + ++++ YVG+ + ER E++ + D+
Sbjct: 117 YVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR---------DRATFT 167
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV + T E A +A+L++
Sbjct: 168 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 227
Query: 367 NGKMVVSKPLYVALAQRKEDRRA 389
+GK + K LYV AQ+K +R A
Sbjct: 228 HGKSIDGKVLYVGRAQKKIERLA 250
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 176/385 (45%), Positives = 246/385 (63%), Gaps = 30/385 (7%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY F+ G ++S+RVCRD+ TRRSLGY Y+NF Q+ A
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINF---QQPAD 64
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS------- 133
E + GK Y R+ GA +++L + +H L
Sbjct: 65 GSEEVG----RGK---HFYQEHGRVHRQQGA----VRHLLRIREHSVLQGKGQRCQGLCR 113
Query: 134 -----AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
G +V D G SKGYGFV F+ EE+A +AIE +NGMLLND++V+VG+F
Sbjct: 114 DAGGDVTGRTALFQVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGNFK 172
Query: 189 RKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
++ER+ E+ KFTNVY+KN E T+E L++ F +G S VM+D G+S+ FG
Sbjct: 173 SRKEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFG 232
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
FVNF + DA +AV+ +NG + + K YVG+AQK+ ER+ ELK +FE ++ ++QG
Sbjct: 233 FVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGV 292
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
NLY+KNLDD IDDE+L++ F+P+G+ITS KVM D SRG GFV FS+PEEA++A+ EM
Sbjct: 293 NLYVKNLDDGIDDERLRKEFAPYGTITSAKVMTD-GPQSRGFGFVCFSSPEEATKAVTEM 351
Query: 367 NGKMVVSKPLYVALAQRKEDRRARL 391
NG++V +KPLYVALAQR+E+R+A L
Sbjct: 352 NGRIVATKPLYVALAQRREERKAIL 376
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 159/300 (53%), Gaps = 36/300 (12%)
Query: 55 VCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-- 111
VC + R S GYG+V+F + A RA+E +N LN + + V + R + G+
Sbjct: 129 VCDE---RGSKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGNFKSRKEREEELGSKA 185
Query: 112 ---GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
N++IKN + + L + FSAFG LS +V D G+S+G+GFV F + AQKA
Sbjct: 186 LKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKA 245
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTT 215
++++NG LN K +YVG ++ ER E+ K KF N+YVKNL +
Sbjct: 246 VDEMNGTELNGKVIYVGRAQKRLERQGEL-KRKFELIKQDRIQRYQGVNLYVKNLDDGID 304
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+E L+K F YGTITSA VM DG +S+ FGFV F + ++A +AV +NG+ K YV
Sbjct: 305 DERLRKEFAPYGTITSAKVMTDGP-QSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 363
Query: 276 GKAQKKSERELELKHQFEQNM-------KEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
AQ++ ER+ L +++ Q + D +Q A Y+ ++ + +SP
Sbjct: 364 ALAQRREERKAILTNKYMQRLATLRTMSSPVIDSYQQAGYYM-----TVPQPPTRSFYSP 418
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 140/286 (48%), Gaps = 28/286 (9%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L+ FS G I+S +V D+ +S GY ++ F + + +
Sbjct: 12 SLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADGSEEVGR 71
Query: 172 LNGMLLNDKQVY-----VGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY 226
+V+ V H LR +E K + ++ T
Sbjct: 72 GKHFYQEHGRVHRQQGAVRHLLRIREHSVLQGKGQRCQGLCRDAGGDVT----------- 120
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G V+ D G SK +GFV+FE + A RA+E +NG +D++ +VG + + ERE
Sbjct: 121 GRTALFQVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGNFKSRKEREE 179
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
EL + A KF N+YIKN + DEKLK++FS FG S +VM+D G SR
Sbjct: 180 ELGSK--------ALKF--TNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSR 229
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G GFV F+ +A +A+ EMNG + K +YV AQ++ +R+ L+
Sbjct: 230 GFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELK 275
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 121/214 (56%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G+ A +F T++Y+ + + TD +L ++F+ G+ +SVRV +D RS G+G+VNF++
Sbjct: 182 GSKALKF--TNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKD-ERGRSRGFGFVNFAH 238
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
+A +A++ +N T LNGK I V + + D R G N+++K
Sbjct: 239 HGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGV-NLYVK 297
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L F+ +G I S KV TD QS+G+GFV F + E A KA+ ++NG ++
Sbjct: 298 NLDDGIDDERLRKEFAPYGTITSAKVMTD-GPQSRGFGFVCFSSPEEATKAVTEMNGRIV 356
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV R++ER K+ TN Y++ L+
Sbjct: 357 ATKPLYVALAQRREER-----KAILTNKYMQRLA 385
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 172/369 (46%), Positives = 243/369 (65%), Gaps = 3/369 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT+ L F+ V+SV +CR+ T +SL Y Y+NF + A+ A+
Sbjct: 22 SLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYINFDSPFSASNAMAR 81
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRK-SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN T L GK +R+M+S RD S R+ +G GN+++KNLD +I L F+ FG ILSCKV
Sbjct: 82 LNHTDLKGKAMRIMWSQRDLSYRRRTGFGNLYVKNLDISITSSGLERMFNPFGVILSCKV 141
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
+ NGQSKG+GFVQF+ E+SA A L+G +++ K+++V F+ K ER FT
Sbjct: 142 VEE-NGQSKGFGFVQFETEQSAVTARSALHGSMVDGKKLFVAKFINKNERVAMAGNKGFT 200
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL E+ TE+ L + F +YGT++S VVMRDG G+S+ FGFVNF + ++A +AV++L
Sbjct: 201 NVYVKNLIENITEDILHRLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDSL 260
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+G++ K +VGKA K+ ER LKH++ N A + +NLY+KNL +S++D L+
Sbjct: 261 HGRQVGSKTLFVGKALKRDERREMLKHKYRDNFI-AKSNMRWSNLYVKNLSESMNDTTLR 319
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
++F +G I S KVMR +G S+G GFV FS EE+ +A +NG V K L V +A+R
Sbjct: 320 EIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLNGFSVDGKLLVVRVAER 379
Query: 384 KEDRRARLQ 392
KEDR RLQ
Sbjct: 380 KEDRLKRLQ 388
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 160/287 (55%), Gaps = 17/287 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +LYV +L+ ++T S L +FN G ++S +V + +S G+G+V F Q A A
Sbjct: 108 GFGNLYVKNLDISITSSGLERMFNPFGVILSCKVVEE--NGQSKGFGFVQFETEQSAVTA 165
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
L+ + ++GK + V + R G N+++KNL + I LH FS +G
Sbjct: 166 RSALHGSMVDGKKLFVAKFINKNERVAMAGNKGFTNVYVKNLIENITEDILHRLFSQYGT 225
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER---- 193
+ S V D G+S+G+GFV F + E+A+KA++ L+G + K ++VG L++ ER
Sbjct: 226 VSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDSLHGRQVGSKTLFVGKALKRDERREML 285
Query: 194 -----DTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
D I KS +++N+YVKNLSES + L++ FG YG I SA VMR +G+SK FG
Sbjct: 286 KHKYRDNFIAKSNMRWSNLYVKNLSESMNDTTLREIFGRYGQIVSAKVMRHENGRSKGFG 345
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FV F N +++ +A LNG D K V A++K +R L+ F
Sbjct: 346 FVCFSNREESKQAKRYLNGFSVDGKLLVVRVAERKEDRLKRLQQYFH 392
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 109/199 (54%), Gaps = 16/199 (8%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N N A A G T++YV +L N+T+ L+ LF+Q G V SV V RD RS G+G+
Sbjct: 186 NKNERVAMAGNKGFTNVYVKNLIENITEDILHRLFSQYGTVSSVVVMRD-GMGRSRGFGF 244
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPI-----------RVMYSH--RDPSLRKSGA--GNI 114
VNF + + A +A++ L+ + K + R M H RD + KS N+
Sbjct: 245 VNFCHPENAKKAVDSLHGRQVGSKTLFVGKALKRDERREMLKHKYRDNFIAKSNMRWSNL 304
Query: 115 FIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
++KNL ++++ L + F +G I+S KV NG+SKG+GFV F N E +++A LNG
Sbjct: 305 YVKNLSESMNDTTLREIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLNG 364
Query: 175 MLLNDKQVYVGHFLRKQER 193
++ K + V RK++R
Sbjct: 365 FSVDGKLLVVRVAERKEDR 383
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 102/200 (51%), Gaps = 17/200 (8%)
Query: 191 QERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVN 249
Q + + S F ++YV +LS TE+DL F + S + R+ GKS C+ ++N
Sbjct: 9 QALENHQHSSMFASLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYIN 68
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
F++ A+ A+ LN GKA + + +L ++ NLY
Sbjct: 69 FDSPFSASNAMARLNHTDLK------GKAMRIMWSQRDLSYRRRTGF---------GNLY 113
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLD SI L+++F+PFG I SCKV+ + +G S+G GFV F T + A A ++G
Sbjct: 114 VKNLDISITSSGLERMFNPFGVILSCKVVEE-NGQSKGFGFVQFETEQSAVTARSALHGS 172
Query: 370 MVVSKPLYVALAQRKEDRRA 389
MV K L+VA K +R A
Sbjct: 173 MVDGKKLFVAKFINKNERVA 192
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 323 bits (828), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 163/356 (45%), Positives = 237/356 (66%), Gaps = 6/356 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ VT++ L F +G + S+R+CR T +SL Y YVN + +A+RAL +
Sbjct: 18 SLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALGL 77
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN T L GKP+R+M+ RDP RK+G N+F+KNLD +I L FS +G ILSCKVA
Sbjct: 78 LNHTNLKGKPMRIMWCQRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTILSCKVA 137
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+ NG+SKG+GFVQF++++SA A L+ +L K+++V F++K ER FTN
Sbjct: 138 GE-NGRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTERTAAAPCEVFTN 196
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YVKNL E+ TE+ L+ F G ++S +M D +GKSK FGFVNF++ DDA +AV+ +N
Sbjct: 197 LYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMN 256
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G K +VGKAQ+KSER + LK +++ + +K + +NLY+KNL+ IDD+KLK+
Sbjct: 257 GSVIGSKTLFVGKAQRKSERTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKKLKE 316
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+FS +G I S KV+ G S+ GFV F++PEEA++AL+ +NG PL+ ++
Sbjct: 317 VFSAYGKILSVKVICHNDGTSKQFGFVCFASPEEANKALVALNG-----HPLFFSV 367
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 147/282 (52%), Gaps = 18/282 (6%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA-TDLNGQSKGYGFVQFDNEESAQKAIE 170
++++ +LD + L F G I S ++ L G+S Y +V + A +A+
Sbjct: 17 ASLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALG 76
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN L K + + +RD K+ F N++VKNL S + L+ F +YGTI
Sbjct: 77 LLNHTNLKGKPMRI----MWCQRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTIL 132
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V + +G+SK FGFV FE+ D A A AL+ K+ +V K KK+ER
Sbjct: 133 SCKVAGE-NGRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTERT----- 186
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
AA NLY+KNLD++I ++ LK +FS G ++S +M D G S+ GF
Sbjct: 187 -------AAAPCEVFTNLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGF 239
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
V F +P++A +A+ MNG ++ SK L+V AQRK +R L+
Sbjct: 240 VNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERTMILK 281
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 17/170 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LYV +L+ +T+ L D+F+ +G V SV + D +S +G+VNF + +A +A++
Sbjct: 195 TNLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMD-HEGKSKHFGFVNFKSPDDAKKAVD 253
Query: 84 MLNFTPLNGKPIRVMYSHR----------------DPSLRKSGAGNIFIKNLDKAIDHKA 127
++N + + K + V + R + S K A N+++KNL+ ID K
Sbjct: 254 VMNGSVIGSKTLFVGKAQRKSERTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKK 313
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
L + FSA+G ILS KV +G SK +GFV F + E A KA+ LNG L
Sbjct: 314 LKEVFSAYGKILSVKVICHNDGTSKQFGFVCFASPEEANKALVALNGHPL 363
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR-DPSGISRGSGFVAFSTPEEASRA 362
+GA+LY+ +LD + + L+ F G I+S ++ R +G S +V + +ASRA
Sbjct: 15 RGASLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRA 74
Query: 363 LLEMNGKMVVSKPLYVALAQR 383
L +N + KP+ + QR
Sbjct: 75 LGLLNHTNLKGKPMRIMWCQR 95
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 323 bits (828), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 176/373 (47%), Positives = 240/373 (64%), Gaps = 33/373 (8%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +
Sbjct: 4 APKYRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF +NGK IR+M+S RD LR+SG GN
Sbjct: 64 AQKALDTMNFDVVNGKSIRLMWSQRDAYLRRSGIGN------------------------ 99
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
V +D G SKGY FV F N+ +A +AIE++NG L D +V+VG F +++R+ E+
Sbjct: 100 -----VMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRQLKDCKVFVGRFKNRKDREAEL 153
Query: 198 -NKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK+ +FTNVY+KN E +E L++ F +YG S VM D GKSK FGFV+F+N +
Sbjct: 154 RNKAGEFTNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDNHEA 213
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+ +NGK + + +VG+AQKK ER+ ELK FEQ KE QG LYIKNLDD
Sbjct: 214 AKKAVKEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQLKKERIHGCQGVKLYIKNLDD 273
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FS FGSI+ KVM++ G S+G G + FS+ EEA++A+ EMNG ++ SKP
Sbjct: 274 TIDDEKLRKEFSSFGSISRVKVMQE-GGQSKGFGLICFSSLEEATKAMTEMNGHILGSKP 332
Query: 376 LYVALAQRKEDRR 388
L +ALA R R
Sbjct: 333 LSIALAHRHYXER 345
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 150/289 (51%), Gaps = 45/289 (15%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FS G +LS ++ DL +S GY +V F AQKA++
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++N K + L +RD + +S NV
Sbjct: 70 TMNFDVVNGKSIR----LMWSQRDAYLRRSGIGNV------------------------- 100
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
M D G SK + FV+F+N A RA+E +NG++ D + +VG+ + + +RE EL++
Sbjct: 101 ----MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRQLKDCKVFVGRFKNRKDREAELRN 155
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN + +DDEKLK++FS +G S KVM D SG S+G GF
Sbjct: 156 K--------AGEF--TNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGF 205
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
V+F E A +A+ EMNGK + + ++V AQ+K +R+A L+ Q +
Sbjct: 206 VSFDNHEAAKKAVKEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQLK 254
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
LY+ +L+ + D +L F+ G + V+V ++ +S G+G + FS+ +EA +A+
Sbjct: 264 VKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQEGG--QSKGFGLICFSSLEEATKAMT 321
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRK 108
+N L KP+ + +HR RK
Sbjct: 322 EMNGHILGSKPLSIALAHRHYXERK 346
>gi|71745214|ref|XP_827237.1| polyadenylate-binding protein 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831402|gb|EAN76907.1| polyadenylate-binding protein 1, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331451|emb|CBH14445.1| PABP1 [Trypanosoma brucei gambiense DAL972]
Length = 566
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 167/393 (42%), Positives = 248/393 (63%), Gaps = 26/393 (6%)
Query: 8 GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 67
Q V G + SLYVGDL+ + + QL D+F G +++VRVCRD+ T+RSLGY
Sbjct: 5 AQGVPSGPSATKPLQVASLYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQRSLGY 64
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
GYVN+ + A++A+E LNF + K IR+M+ RDP+LR SG+GNIF+KNL + +D +
Sbjct: 65 GYVNYDDVNSASKAMEELNFKRVGEKCIRIMWQQRDPALRYSGSGNIFVKNLKEEVDSRE 124
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ------ 181
L F FG ILSCKV D +G+S+GYGFV F ++++A+ AIEK+NG DK+
Sbjct: 125 LSLIFKKFGEILSCKVMDDESGKSRGYGFVHFKDDDAAKAAIEKMNG----DKEHADADK 180
Query: 182 --VYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
+YV +F+R+ R + + FTNVY+K L + ++ ++K F ++G ITSA + +D +
Sbjct: 181 AALYVANFIRRNARLAAL-VANFTNVYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKN 239
Query: 240 GKSKCFGFVNFENSDDAARAVEA-----LNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
G++ F F NFE DDA +A+EA + G ++ YV +AQ +SER + L+ ++ Q
Sbjct: 240 GRA--FAFCNFEKHDDAVKAIEASHDQEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQ 297
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
G NLY++N D ++ L +LF +G I SC+VM D +GISRG GFV+F
Sbjct: 298 CQS------LGNNLYVRNFDAEFTEKDLNELFKEYGVIRSCRVMTDANGISRGFGFVSFE 351
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
++A+ AL EMNG+M+ KPL V +AQR++ R
Sbjct: 352 NADQANAALREMNGRMLNGKPLVVNIAQRRDQR 384
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 156/298 (52%), Gaps = 29/298 (9%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIE 170
++++ +LD AI+ L D F +G IL+ +V D+ Q S GYG+V +D+ SA KA+E
Sbjct: 21 ASLYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQRSLGYGYVNYDDVNSASKAME 80
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+LN + +K + + Q+RD + S N++VKNL E +L F ++G I
Sbjct: 81 ELNFKRVGEKCIRI----MWQQRDPALRYSGSGNIFVKNLKEEVDSRELSLIFKKFGEIL 136
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK----FDDKEWYVGKAQKKSEREL 286
S VM D GKS+ +GFV+F++ D A A+E +NG K D YV +++ R
Sbjct: 137 SCKVMDDESGKSRGYGFVHFKDDDAAKAAIEKMNGDKEHADADKAALYVANFIRRNARLA 196
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
L F N+YIK L ++D + +++ FS FG ITS + +D +G R
Sbjct: 197 ALVANF-------------TNVYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKNG--R 241
Query: 347 GSGFVAFSTPEEASRALLEMNGKMV--VSKP---LYVALAQRKEDRRARLQVCLLQCR 399
F F ++A +A+ + + V V++P LYV AQ + +R L+ +QC+
Sbjct: 242 AFAFCNFEKHDDAVKAIEASHDQEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQCQ 299
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 176/395 (44%), Positives = 254/395 (64%), Gaps = 8/395 (2%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
MA V+ + Q + G ++++FG SLYVGDL +VT+ L D F+ VVSV +CR+
Sbjct: 1 MALVKTETQAL-GNHQHSSRFG--SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSV 57
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK---SGAGNIFIK 117
T +S+ Y Y+NF + A+ A+ LN + L GK +R+M+S RD + R+ +G N+++K
Sbjct: 58 TGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVK 117
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD +I L F FG+ILSCKV + NGQSKG+GFVQFD E+SA A L+G ++
Sbjct: 118 NLDSSITSSCLERMFCPFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMV 176
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K+++V F+ K ER TNVYVKNL E+ T++ L F +YGT++S VVMRD
Sbjct: 177 YGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD 236
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
G G+S+ FGFVNF N ++A +A+E+L G + K+ +VGKA KK ER LK +F N
Sbjct: 237 GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFI 296
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPE 357
A + +NLY+KNL +S+++ +L+++F +G I S KVM +G S+G GFV FS E
Sbjct: 297 -AKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCE 355
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
E+ +A +NG +V KP+ V +A+RKEDR RLQ
Sbjct: 356 ESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQ 390
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 165/293 (56%), Gaps = 19/293 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +LYV +L++++T S L +F G ++S +V + +S G+G+V F Q A A
Sbjct: 110 GFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSA 167
Query: 82 LEMLNFTPLNGKPIRVM-YSHRDPSLRKSG---AGNIFIKNLDKAIDHKALHDTFSAFGN 137
L+ + + GK + V + ++D +G + N+++KNL + + LH FS +G
Sbjct: 168 RSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGT 227
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
+ S V D G+S+G+GFV F N E+A+KA+E L G+ L K+++VG L+K ER E+
Sbjct: 228 VSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERR-EM 286
Query: 198 NKSKFT------------NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
K KF+ N+YVKNLSES E L++ FG YG I SA VM +G+SK F
Sbjct: 287 LKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGF 346
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
GFV F N +++ +A LNG D K V A++K +R L+ F+ ++
Sbjct: 347 GFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPRQ 399
>gi|10086463|gb|AAG12523.1|AC015446_4 Similar to Polyadenylate-Binding Proteins 2 and 5 [Arabidopsis
thaliana]
Length = 338
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 162/311 (52%), Positives = 227/311 (72%), Gaps = 7/311 (2%)
Query: 29 GDLEANVTDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
GDL+++V + LY F++ + SV+VC D +T SLGYGYVNF+++ +A A+E+LN+
Sbjct: 18 GDLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGYVNFNHSSQAKTAMEVLNY 77
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
L GKP+R+M+S RDPS R SG GN+F+KNLD++ID+K L D FSAFG +LSCKVA D
Sbjct: 78 CKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA 137
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-FTNVY 206
+G SKGYGFVQF ++ S A NG L+ ++ ++V F+ + + D KS+ FTNVY
Sbjct: 138 SGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWD----KSRVFTNVY 193
Query: 207 VKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK 266
VKNL E+ T+ DL++ FGE+G ITSAVVM+DG+GKS+ FGFVNFE ++ A A+E +NG
Sbjct: 194 VKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGV 253
Query: 267 KFDDKEWYVGKAQKKSERELELKHQFE-QNMKEAADKFQGANLYIKNLDDSIDDEKLKQL 325
D+KE +VG+AQ+K+ R +LK +FE + + +G NLY+KNLDDS+D+ KL++L
Sbjct: 254 VVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEEL 313
Query: 326 FSPFGSITSCK 336
FS FG+ITSCK
Sbjct: 314 FSEFGTITSCK 324
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 134/281 (47%), Gaps = 29/281 (10%)
Query: 118 NLDKAIDHKALHDTFSAFG-NILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGM 175
+LD +++ L+ FS F +I S KV D N G S GYG+V F++ A+ A+E LN
Sbjct: 19 DLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGYVNFNHSSQAKTAMEVLNYC 78
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
L K + + ERD S NV+VKNL ES + L F +G + S V
Sbjct: 79 KLKGKPMRIMF----SERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVA 134
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW----YVGKAQKKSERELELKHQ 291
RD G SK +GFV F + A NG ++ +V + Q R
Sbjct: 135 RDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVF----- 189
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
N+Y+KNL ++ D LK+LF FG ITS VM+D G SR GFV
Sbjct: 190 --------------TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
F E A A+ +MNG +V K L+V AQRK +R L+
Sbjct: 236 NFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLK 276
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 17/226 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + QL D+F+ G+V+S +V RD S S GYG+V F + A
Sbjct: 100 GRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASG-VSKGYGFVQFYSDLSVYTA 158
Query: 82 LEMLNFTPLNGKPIRVM-YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
N T + + I V + R + N+++KNL + L F FG I S
Sbjct: 159 CNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITS 218
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
V D G+S+ +GFV F+ E+A AIEK+NG+++++K+++VG RK R TE K+
Sbjct: 219 AVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR-TEDLKA 277
Query: 201 KF--------------TNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
KF N+YVKNL +S L++ F E+GTITS
Sbjct: 278 KFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSC 323
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 18/140 (12%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +L TD+ L LF + G++ S V +D +S +G+VNF A+ A A+E
Sbjct: 190 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIE 248
Query: 84 MLNFTPLNGKPIRVMYSHRDPS-----------------LRKSGAGNIFIKNLDKAIDHK 126
+N ++ K + V + R + ++ N+++KNLD ++D+
Sbjct: 249 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 308
Query: 127 ALHDTFSAFGNILSCKVATD 146
L + FS FG I SCK A +
Sbjct: 309 KLEELFSEFGTITSCKYACN 328
>gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 [Anemia phyllitidis]
Length = 472
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 151/226 (66%), Positives = 184/226 (81%)
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML+NDKQV V F+R+QER+ +KF NV+VKNL+E TT+EDL + FG +G I+SAV
Sbjct: 1 GMLINDKQVVVTPFVRRQERELTNAATKFNNVFVKNLAEETTDEDLMEVFGGFGPISSAV 60
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
VMRD +G SKCFGFVNF+N+DDAA+AVE +NGK F+DKEWYVG+AQKKSERE ELK +FE
Sbjct: 61 VMRDANGNSKCFGFVNFKNADDAAKAVENINGKVFNDKEWYVGRAQKKSEREAELKVKFE 120
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
Q KE +KFQG NLY+KN+DDSIDDEKLK+LFS FG++ SCK+MR P G GSGFVA
Sbjct: 121 QLRKERTEKFQGVNLYLKNVDDSIDDEKLKELFSGFGTVNSCKIMRSPQGQIVGSGFVAL 180
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
S+ +EA RA+ EMNGKMV SKPLYVA+AQRK++RRA+LQ Q R
Sbjct: 181 SSKDEAMRAVNEMNGKMVGSKPLYVAVAQRKDERRAKLQAQFAQLR 226
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 109/195 (55%), Gaps = 14/195 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+F+KNL + + L + F FG I S V D NG SK +GFV F N + A KA+E +
Sbjct: 31 NVFVKNLAEETTDEDLMEVFGGFGPISSAVVMRDANGNSKCFGFVNFKNADDAAKAVENI 90
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDL 219
NG + NDK+ YVG +K ER+ E+ K KF N+Y+KN+ +S +E L
Sbjct: 91 NGKVFNDKEWYVGRAQKKSEREAEL-KVKFEQLRKERTEKFQGVNLYLKNVDDSIDDEKL 149
Query: 220 QKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
++ F +GT+ S +MR G+ GFV + D+A RAV +NGK K YV AQ
Sbjct: 150 KELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNGKMVGSKPLYVAVAQ 209
Query: 280 KKSERELELKHQFEQ 294
+K ER +L+ QF Q
Sbjct: 210 RKDERRAKLQAQFAQ 224
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 17/189 (8%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+++V +L TD L ++F G + S V RD + S +G+VNF NA +AA+A+E
Sbjct: 31 NVFVKNLAEETTDEDLMEVFGGFGPISSAVVMRD-ANGNSKCFGFVNFKNADDAAKAVEN 89
Query: 85 LNFTPLNGKPIRV----MYSHRDPSLR------------KSGAGNIFIKNLDKAIDHKAL 128
+N N K V S R+ L+ K N+++KN+D +ID + L
Sbjct: 90 INGKVFNDKEWYVGRAQKKSEREAELKVKFEQLRKERTEKFQGVNLYLKNVDDSIDDEKL 149
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
+ FS FG + SCK+ GQ G GFV +++ A +A+ ++NG ++ K +YV
Sbjct: 150 KELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNGKMVGSKPLYVAVAQ 209
Query: 189 RKQERDTEI 197
RK ER ++
Sbjct: 210 RKDERRAKL 218
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+F +LY+ +++ ++ D +L +LF+ G V S ++ R + +G G+V S+ EA
Sbjct: 129 KFQGVNLYLKNVDDSIDDEKLKELFSGFGTVNSCKIMRS-PQGQIVGSGFVALSSKDEAM 187
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
RA+ +N + KP+ V + R
Sbjct: 188 RAVNEMNGKMVGSKPLYVAVAQR 210
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 155/315 (49%), Positives = 210/315 (66%), Gaps = 33/315 (10%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL ++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+K+NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTE-----------------------------INKSKFTNVYVKNLSESTTEEDLQK 221
+ER+ E +N+ + N+YVKNL ++ +E L+K
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRK 237
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
F +GTITSA VM + +G+SK FGFV F ++A +AV +NG+ K YV AQ+K
Sbjct: 238 EFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRK 296
Query: 282 SERELELKHQFEQNM 296
+R+ L Q+ Q M
Sbjct: 297 EDRKAHLASQYMQRM 311
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 186/313 (59%), Gaps = 23/313 (7%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+P ++++ +L I L + FS+ G +LS +V D+ +S GY +V F
Sbjct: 2 NPGAPNYPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + + + +RD + KS NV++KNL ++ + +
Sbjct: 62 PADAERALDTMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V +D G SK +GFV+FE + A ++++ +NG + K+ YVGK +
Sbjct: 118 TFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPR 177
Query: 282 SERE-----------------LELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
ERE ELK +FEQ E +++QG NLY+KNLDD+IDDE+L++
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRK 237
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMNG++V SKPLYVALAQRK
Sbjct: 238 EFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRK 296
Query: 385 EDRRARLQVCLLQ 397
EDR+A L +Q
Sbjct: 297 EDRKAHLASQYMQ 309
>gi|407408437|gb|EKF31876.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
Length = 569
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 164/385 (42%), Positives = 242/385 (62%), Gaps = 27/385 (7%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
SLYVGDL+ VT+ L +LF G +++VRVCRD+ T+RSLGYGY+NF+N AA+A+
Sbjct: 21 VASLYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINFNNHDSAAKAM 80
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LNF + K +R+M+ RDP+LR SG GN+F+KNL +D + L F FG+ILSCK
Sbjct: 81 EALNFKRVGDKCMRIMWQQRDPALRYSGNGNVFVKNLKNEVDSRELGAIFKKFGDILSCK 140
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ---------VYVGHFLRKQER 193
V D G+S+GYGFV F N+ +A++AIE +NG DK +YV +F+R+ R
Sbjct: 141 VMEDEEGKSRGYGFVHFKNDNAAKEAIENMNG----DKDHADEEKKMGLYVANFIRRNAR 196
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ + FTNVY+K + + +E ++K F +G ITS+ +D +G + F F NFE
Sbjct: 197 LATL-VANFTNVYIKQVLPTVDKEVIEKFFSRFGGITSSATCKDKNG--RVFAFCNFEKH 253
Query: 254 DDAARAVEA-----LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
+DA +A+EA ++G ++ YV +AQ +SER + L+ ++ Q + G NL
Sbjct: 254 EDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQC------QTLGNNL 307
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y++N D +E L +LF +G I SC+VM D +G SRG GFV+F ++A+ AL EMNG
Sbjct: 308 YVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFGNADQANAALREMNG 367
Query: 369 KMVVSKPLYVALAQRKEDRRARLQV 393
+M+ KPL V +AQR++ R L++
Sbjct: 368 RMLNGKPLIVNIAQRRDQRFMMLRL 392
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 154/296 (52%), Gaps = 22/296 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAI 169
++++ +LD + L + F FG IL+ +V D+ Q S GYG++ F+N +SA KA+
Sbjct: 21 VASLYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINFNNHDSAAKAM 80
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E LN + DK + + Q+RD + S NV+VKNL +L F ++G I
Sbjct: 81 EALNFKRVGDKCMRIMW----QQRDPALRYSGNGNVFVKNLKNEVDSRELGAIFKKFGDI 136
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK-FDDKEWYVGKAQKKSERELEL 288
S VM D +GKS+ +GFV+F+N + A A+E +NG K D+E +G L +
Sbjct: 137 LSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGDKDHADEEKKMG---------LYV 187
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
+ +N + A N+YIK + ++D E +++ FS FG ITS +D +G R
Sbjct: 188 ANFIRRNARLATLVANFTNVYIKQVLPTVDKEVIEKFFSRFGGITSSATCKDKNG--RVF 245
Query: 349 GFVAFSTPEEASRALLEMNGKMV--VSKP---LYVALAQRKEDRRARLQVCLLQCR 399
F F E+A +A+ + + V V P LYV AQ + +R L+ +QC+
Sbjct: 246 AFCNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQCQ 301
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 149/295 (50%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ V +L +F + G ++S +V D +S GYG+V+F N A A
Sbjct: 108 GNGNVFVKNLKNEVDSRELGAIFKKFGDILSCKVMED-EEGKSRGYGFVHFKNDNAAKEA 166
Query: 82 LEMLNFTPLNGKPIRVM------YSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFS 133
+E +N + + M + R+ L A N++IK + +D + + FS
Sbjct: 167 IENMNGDKDHADEEKKMGLYVANFIRRNARLATLVANFTNVYIKQVLPTVDKEVIEKFFS 226
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK-----LNGMLLNDKQVYVGHFL 188
FG I S D NG + + F F+ E A KAIE ++G++ +++YV
Sbjct: 227 RFGGITSSATCKDKNG--RVFAFCNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQ 284
Query: 189 RKQERDTEINKSKF------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
+ ER + + N+YV+N TEE+L + F EYG I S VM D +G S
Sbjct: 285 PRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNS 344
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
+ FGFV+F N+D A A+ +NG+ + K V AQ++ +R + L+ QF+Q ++
Sbjct: 345 RGFGFVSFGNADQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRLQFQQRLQ 399
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASR 361
Q A+LY+ +LD + + L +LF PFG+I + +V RD + S G G++ F+ + A++
Sbjct: 19 LQVASLYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINFNNHDSAAK 78
Query: 362 ALLEMNGKMVVSKPLYVALAQR 383
A+ +N K V K + + QR
Sbjct: 79 AMEALNFKRVGDKCMRIMWQQR 100
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 163/381 (42%), Positives = 243/381 (63%), Gaps = 19/381 (4%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
SLYVGDL+ VT+ L +LF G +++VRVCRD+ T+RSLGYGYVNF++ AA+A+
Sbjct: 28 VASLYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFNSHDSAAKAM 87
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LNF + K +R+M+ RDP+LR SG GNIF+KNL +D + L F FG+ILSCK
Sbjct: 88 EALNFKRVGDKCMRIMWQQRDPTLRYSGNGNIFVKNLKNEVDSRELSVIFKKFGDILSCK 147
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ-----VYVGHFLRKQERDTEI 197
V D G+S+GYGFV F N+ +A++AIE +NG + + +YV +F+R+ R +
Sbjct: 148 VMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGEKDHADEEKKMGLYVANFIRRNARLATL 207
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+ FTNVY+K + + +E ++K F ++G ITS+ +D +G + F F NFE +DA
Sbjct: 208 -VANFTNVYIKQVLPTVDKEVIEKFFSKFGGITSSATCKDKNG--RVFAFCNFEKHEDAV 264
Query: 258 RAVEA-----LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+A+EA ++G ++ YV +AQ +SER + L+ ++ Q + G NLY++N
Sbjct: 265 KAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQC------QTLGNNLYVRN 318
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
D +E L +LF +G I SC+VM D +G SRG GFV+F ++A+ AL EMNG+M+
Sbjct: 319 FDPEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLN 378
Query: 373 SKPLYVALAQRKEDRRARLQV 393
KPL V +AQR++ R L++
Sbjct: 379 GKPLIVNIAQRRDQRFMMLRL 399
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 155/296 (52%), Gaps = 22/296 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAI 169
++++ +LD + L + F FG IL+ +V D+ Q S GYG+V F++ +SA KA+
Sbjct: 28 VASLYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFNSHDSAAKAM 87
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E LN + DK + + Q+RD + S N++VKNL +L F ++G I
Sbjct: 88 EALNFKRVGDKCMRIMW----QQRDPTLRYSGNGNIFVKNLKNEVDSRELSVIFKKFGDI 143
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK-FDDKEWYVGKAQKKSERELEL 288
S VM D +GKS+ +GFV+F+N + A A+E +NG+K D+E +G L +
Sbjct: 144 LSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGEKDHADEEKKMG---------LYV 194
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
+ +N + A N+YIK + ++D E +++ FS FG ITS +D +G R
Sbjct: 195 ANFIRRNARLATLVANFTNVYIKQVLPTVDKEVIEKFFSKFGGITSSATCKDKNG--RVF 252
Query: 349 GFVAFSTPEEASRALLEMNGKMV--VSKP---LYVALAQRKEDRRARLQVCLLQCR 399
F F E+A +A+ + + V V P LYV AQ + +R L+ +QC+
Sbjct: 253 AFCNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQCQ 308
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 150/295 (50%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ V +L +F + G ++S +V D +S GYG+V+F N A A
Sbjct: 115 GNGNIFVKNLKNEVDSRELSVIFKKFGDILSCKVMED-EEGKSRGYGFVHFKNDNAAKEA 173
Query: 82 LEMLNFTPLNGKPIRVM------YSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFS 133
+E +N + + M + R+ L A N++IK + +D + + FS
Sbjct: 174 IENMNGEKDHADEEKKMGLYVANFIRRNARLATLVANFTNVYIKQVLPTVDKEVIEKFFS 233
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK-----LNGMLLNDKQVYVGHFL 188
FG I S D NG + + F F+ E A KAIE ++G++ +++YV
Sbjct: 234 KFGGITSSATCKDKNG--RVFAFCNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQ 291
Query: 189 RKQERDTEINKSKF------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
+ ER + + N+YV+N TEE+L + F EYG I S VM D +G S
Sbjct: 292 PRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNS 351
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
+ FGFV+FEN+D A A+ +NG+ + K V AQ++ +R + L+ QF+Q ++
Sbjct: 352 RGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRLQFQQRLQ 406
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASR 361
Q A+LY+ +LD + + L +LF PFG+I + +V RD + S G G+V F++ + A++
Sbjct: 26 LQVASLYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFNSHDSAAK 85
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRR 388
A+ +N K V K + + QR R
Sbjct: 86 AMEALNFKRVGDKCMRIMWQQRDPTLR 112
>gi|167527097|ref|XP_001747881.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773630|gb|EDQ87268.1| predicted protein [Monosiga brevicollis MX1]
Length = 553
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 167/377 (44%), Positives = 249/377 (66%), Gaps = 10/377 (2%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVV-SVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
+ SLYVGDL +V +++LY+ FN G V SVRVCRD+ T+ SLGYGYVNF+ ++AA+
Sbjct: 28 SASLYVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQTSLGYGYVNFATPEDAAKV 87
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
E NF L G+P+R+M+S RDP+ R+SG GNIFIKNL +D+KAL+DTF FG +LSC
Sbjct: 88 YEAANFEELKGQPVRIMFSERDPTKRRSGVGNIFIKNLSAEVDNKALYDTFRVFGTVLSC 147
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINK 199
+V D G S+G FVQ+++ E A++ I ++N + DK V V + +++R + E +
Sbjct: 148 RVLYDQEGNSRGIAFVQYEDAEVAKQVIAQVNDKKILDKVVKVEAYKPRRQRMLEAEETQ 207
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM-RDGDGKSKCFGFVNFENSDDAAR 258
FTNV+ KN++ ++ED+ K F +G I S V+ D G+ +GFV ++++ DA +
Sbjct: 208 KNFTNVFFKNVAADISDEDIMKEFENFGEIESKVLKSHDQFGR---YGFVAYKDTADAQK 264
Query: 259 AVEALNGKKF--DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
AV LN K D + YV +AQ+KSER L+ +FE+ E K++ ANLYIKN +
Sbjct: 265 AVSELNDKPLGADGTKLYVARAQRKSERMGRLRREFERRRTEMRAKYKDANLYIKNFSED 324
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS-KP 375
+ +++L+++F +G+I S +V++D G SR GFV FS+ EEA+RA+ EMNG+M KP
Sbjct: 325 VTEDELRKMFEAYGTIVSVRVVKDRDGQSRQFGFVLFSSEEEATRAIQEMNGRMTADGKP 384
Query: 376 LYVALAQRKEDRRARLQ 392
LYV+ + KE+R +Q
Sbjct: 385 LYVSRFRNKEERAQEVQ 401
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 24/207 (11%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG-YGYVNFSN 74
A Q T+++ ++ A+++D + F G++ S + L + G YG+V + +
Sbjct: 203 AEETQKNFTNVFFKNVAADISDEDIMKEFENFGEIES----KVLKSHDQFGRYGFVAYKD 258
Query: 75 AQEAARALEMLNFTPL--NGKPIRVMYSHRDPS----------------LRKSGAGNIFI 116
+A +A+ LN PL +G + V + R K N++I
Sbjct: 259 TADAQKAVSELNDKPLGADGTKLYVARAQRKSERMGRLRREFERRRTEMRAKYKDANLYI 318
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KN + + L F A+G I+S +V D +GQS+ +GFV F +EE A +AI+++NG +
Sbjct: 319 KNFSEDVTEDELRKMFEAYGTIVSVRVVKDRDGQSRQFGFVLFSSEEEATRAIQEMNGRM 378
Query: 177 LND-KQVYVGHFLRKQERDTEINKSKF 202
D K +YV F K+ER E+ + +
Sbjct: 379 TADGKPLYVSRFRNKEERAQEVQRQRM 405
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 148/250 (59%), Positives = 191/250 (76%), Gaps = 4/250 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V+S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSG GNIF+KNLDK ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NGM L K VYVGHF++K ER T N +
Sbjct: 133 CKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN ++ TE L++ F YG ITS +V D K++ F F+N+ ++D A A+
Sbjct: 191 KFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV--KSDNKNRKFCFINYSDADSARNAM 248
Query: 261 EALNGKKFDD 270
E LNGKK +
Sbjct: 249 ENLNGKKITE 258
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 206/395 (52%), Gaps = 27/395 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
GT +++V +L+ + + L+D F+ G ++S +V D +S YG+V++ + + A A
Sbjct: 102 GTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATD-EFGKSKNYGFVHYEDEESAKEA 160
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+E +N L K + V + + + + N+++KN + L FS +G I
Sbjct: 161 IEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEIT 220
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRKQERDTEIN 198
S V +D +++ + F+ + + +SA+ A+E LNG + D ++ + +K+E + N
Sbjct: 221 SMIVKSD--NKNRKFCFINYSDADSARNAMENLNGKKITEDGKIDYNYDPKKEESEKAAN 278
Query: 199 KSKFTNVYVKNLSESTTEEDLQK--SFGEYGTITSAVVMRD--------------GDGKS 242
++ N + +T+E +K + E T A D D K+
Sbjct: 279 ENYNNNNTTSEENATTSETPAEKKTTDSESATNKDATPGEDQTSANGTTTTVTSTTDAKT 338
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKE-----WYVGKAQKKSERELELKHQFEQNMK 297
+ N N+ A E + KK + YVG Q ++ R LK +F+
Sbjct: 339 EETPNDNTANAGINASITEKKDKKKSGESTETPNILYVGPHQSRARRHAILKAKFDTLNT 398
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPE 357
E+ +K G NLYIKNLDDS++D+ LK+LF P+G+ITS KVM+D S+G GFV F T E
Sbjct: 399 ESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHE 458
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
EA++A+ EM+ K++ KPLYV LA+++E R +RLQ
Sbjct: 459 EANKAVTEMHLKIINGKPLYVGLAEKREHRLSRLQ 493
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 60/98 (61%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
NK N+Y+KNL +S ++ L++ F YGTITSA VM+D +SK FGFV F ++A
Sbjct: 402 NKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEAN 461
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
+AV ++ K + K YVG A+K+ R L+ +F N
Sbjct: 462 KAVTEMHLKIINGKPLYVGLAEKREHRLSRLQQRFRMN 499
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N+ +LY+ +L+ ++ D L +LF G + S +V +D +S G+G+V F +EA
Sbjct: 402 NKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKD-DKDQSKGFGFVCFGTHEEA 460
Query: 79 ARALEMLNFTPLNGKPIRV 97
+A+ ++ +NGKP+ V
Sbjct: 461 NKAVTEMHLKIINGKPLYV 479
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 148/248 (59%), Positives = 190/248 (76%), Gaps = 4/248 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V+S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSG GNIF+KNLDK ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NGM L K VYVGHF++K ER T N +
Sbjct: 133 CKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN ++ TE L++ F YG ITS +V D K++ F F+N+ ++D A A+
Sbjct: 191 KFTNLYVKNFPDTVTEAHLKELFSPYGEITSMIV--KSDNKNRKFCFINYSDADSARNAM 248
Query: 261 EALNGKKF 268
E LNGKK
Sbjct: 249 ENLNGKKI 256
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 124/392 (31%), Positives = 209/392 (53%), Gaps = 28/392 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
GT +++V +L+ + + L+D F+ G ++S +V D +S YG+V++ + + A A
Sbjct: 102 GTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATD-EFGKSKNYGFVHYEDEESAKEA 160
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+E +N L K + V + + + + N+++KN + L + FS +G I
Sbjct: 161 IEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKELFSPYGEIT 220
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRKQERDTEIN 198
S V +D +++ + F+ + + +SA+ A+E LNG + D ++ + +K+E + N
Sbjct: 221 SMIVKSD--NKNRKFCFINYSDADSARNAMENLNGKKITEDGKIDHNYDPKKEEAEKAAN 278
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
++ +N + S T + +K+ E T A G+ ++ G S A+
Sbjct: 279 ENSNNTTSEENAATSETPAE-KKTDSESATNKDATT---GEDQTSANGTTTTVTSTTDAK 334
Query: 259 AVEALN--------GKKFDDKE----------WYVGKAQKKSERELELKHQFEQNMKEAA 300
EA N +K D K+ YVG Q ++ R LK +F+ E+
Sbjct: 335 TEEATNDSTANAATAEKKDSKKSGESTETPNILYVGPHQSRARRHALLKAKFDTLNTESR 394
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
+K G NLYIKNLDDS+DD+ LK+LF P+G+ITS KVM+D S+G GFV F T EEA+
Sbjct: 395 NKHPGVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEAN 454
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
+A+ EM+ K++ KPLYV LA+++E R +RLQ
Sbjct: 455 KAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 486
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 136/260 (52%), Gaps = 21/260 (8%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ +L + + L++ F+ G++LS +V D + +S GY +V + N A++A++ L
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N + + L RD + KS N++VKNL ++ + L +F +G I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSC 133
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V D GKSK +GFV++E+ + A A+E +NG + K YVG KKSER
Sbjct: 134 KVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSER-------- 185
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
A + + NLY+KN D++ + LK+LFSP+G ITS V D +R F+
Sbjct: 186 ------ATNDTKFTNLYVKNFPDTVTEAHLKELFSPYGEITSMIVKSD--NKNRKFCFIN 237
Query: 353 FSTPEEASRALLEMNGKMVV 372
+S + A A+ +NGK +
Sbjct: 238 YSDADSARNAMENLNGKKIT 257
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 137/300 (45%), Gaps = 34/300 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LYV + VT++ L +LF+ G++ S+ V D R+ + ++N+S+A A A+E
Sbjct: 193 TNLYVKNFPDTVTEAHLKELFSPYGEITSMIVKSDNKNRK---FCFINYSDADSARNAME 249
Query: 84 ML-------------NFTPL-------------NGKPIRVMYSHRDPSLRKSGAGNIFIK 117
L N+ P N + P+ +K+ + + K
Sbjct: 250 NLNGKKITEDGKIDHNYDPKKEEAEKAANENSNNTTSEENAATSETPAEKKTDSESATNK 309
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
+ D + + T + + K N + + + + + ++ E N + +
Sbjct: 310 DATTGEDQTSANGTTTTVTSTTDAKTEEATNDSTANAATAEKKDSKKSGESTETPNILYV 369
Query: 178 NDKQVYVG-HFLRKQERDT----EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
Q H L K + DT NK N+Y+KNL +S ++ L++ F YGTITSA
Sbjct: 370 GPHQSRARRHALLKAKFDTLNTESRNKHPGVNLYIKNLDDSMDDQTLKELFEPYGTITSA 429
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
VM+D +SK FGFV F ++A +AV ++ K + K YVG A+K+ +R L+ +F
Sbjct: 430 KVMKDDKDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 489
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N+ +LY+ +L+ ++ D L +LF G + S +V +D +S G+G+V F +EA
Sbjct: 395 NKHPGVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKD-DKDQSKGFGFVCFGTHEEA 453
Query: 79 ARALEMLNFTPLNGKPIRV 97
+A+ ++ +NGKP+ V
Sbjct: 454 NKAVTEMHLKIINGKPLYV 472
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 150/250 (60%), Positives = 192/250 (76%), Gaps = 4/250 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSGAGNIF+KNLDK+ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NG+ L K VYVGHF++K ER T N +
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN +S TE L++ F YG ITS +V D K++ F F+N+ +S+ A A+
Sbjct: 191 KFTNLYVKNFPDSVTETHLKELFSPYGEITSMIVKT--DNKNRKFCFINYADSESAKNAM 248
Query: 261 EALNGKKFDD 270
E LNGKK D
Sbjct: 249 ENLNGKKITD 258
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 21/260 (8%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ +L++ + L++ F+ G++ S +V D + +S GY +V + N A++A++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N + + L RD + KS N++VKNL +S + L +F +G I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V D GKSK +GFV++E+ + A A+E +NG + K YVG KKSER
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSER-------- 185
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
A + + NLY+KN DS+ + LK+LFSP+G ITS V D +R F+
Sbjct: 186 ------ATNDTKFTNLYVKNFPDSVTETHLKELFSPYGEITSMIVKTD--NKNRKFCFIN 237
Query: 353 FSTPEEASRALLEMNGKMVV 372
++ E A A+ +NGK +
Sbjct: 238 YADSESAKNAMENLNGKKIT 257
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 86/119 (72%)
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
YVG Q ++ R LK +F+ E+ +K QG NLYIKNLDD+IDD+ LK+LF P+G+IT
Sbjct: 417 YVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTIT 476
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S KVMRD S+G GFV F+ EEA++A+ EM+ K++ KPLYV LA+++E R +RLQ
Sbjct: 477 SAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 535
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 25/188 (13%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV +L+E TE L + F G ++S V RD KS + +VN+ N DA RA++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 264 NGKKFDDKE----WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
N + W S R+ L+ K N+++KNLD SID+
Sbjct: 78 NYTNIKGQPARLMW--------SHRDPSLR------------KSGAGNIFVKNLDKSIDN 117
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L FS FG+I SCKV D G S+ GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVG 177
Query: 380 LAQRKEDR 387
+K +R
Sbjct: 178 HFIKKSER 185
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
NK + N+Y+KNL ++ ++ L++ F YGTITSA VMRD +SK FGFV F ++A
Sbjct: 444 NKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEAN 503
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+AV ++ K + K YVG A+K+ +R L+ +F
Sbjct: 504 KAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 538
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD AID + L + F +G I S KV D QSKG+GFV F +E A KA+ ++
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEM 509
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
+ ++N K +YVG ++++R
Sbjct: 510 HLKIINGKPLYVGLAEKREQR 530
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 2 AQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST 61
A ++A+ N+N N +Q +LY+ +L+ + D L +LF G + S +V RD
Sbjct: 429 AILKAKFDNLNMESKNKHQ--GVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRD-DK 485
Query: 62 RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97
+S G+G+V F+ +EA +A+ ++ +NGKP+ V
Sbjct: 486 EQSKGFGFVCFALQEEANKAVTEMHLKIINGKPLYV 521
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 148/250 (59%), Positives = 191/250 (76%), Gaps = 4/250 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V+S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSG GNIF+KNLDK ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NGM L K VYVGHF++K ER T N +
Sbjct: 133 CKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN ++ TE L++ F YG ITS +V D K++ F F+N+ ++D A A+
Sbjct: 191 KFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV--KSDNKNRKFCFINYSDADSARNAM 248
Query: 261 EALNGKKFDD 270
E LNGKK +
Sbjct: 249 ENLNGKKITE 258
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 206/398 (51%), Gaps = 30/398 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
GT +++V +L+ + + L+D F+ G ++S +V D +S YG+V++ + + A A
Sbjct: 102 GTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATD-EFGKSKNYGFVHYEDEESAKEA 160
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+E +N L K + V + + + + N+++KN + L FS +G I
Sbjct: 161 IEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEIT 220
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRKQERDTEIN 198
S V +D +++ + F+ + + +SA+ A+E LNG + D ++ + +K+E + N
Sbjct: 221 SMIVKSD--NKNRKFCFINYSDADSARNAMENLNGKKITEDGKIDYNYDPKKEETEKPAN 278
Query: 199 KSKFTNVYVKNL--------------SESTTEEDL-----QKSFGEYGTITSAVVMRDGD 239
++ N + SE T +D Q S T ++ + D
Sbjct: 279 ENSNNNTTTEENTTTSETPAEKKTPDSEPATNKDATPGEDQTSANGTTTTVTSTTDANPD 338
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKE-----WYVGKAQKKSERELELKHQFEQ 294
K++ N N+ A E + KK + YVG Q ++ R LK +F+
Sbjct: 339 SKTEETPNDNTANAGTNASTTEKKDNKKSGENTETPNILYVGPHQSRARRHAILKAKFDT 398
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
E+ +K G NLYIKNLDDS++D+ LK+LF P+G+ITS KVM+D S+G GFV F
Sbjct: 399 LNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFG 458
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
T EEA++A+ EM+ K++ KPLYV LA+++E R +RLQ
Sbjct: 459 THEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 496
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 60/95 (63%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
NK N+Y+KNL +S ++ L++ F YGTITSA VM+D +SK FGFV F ++A
Sbjct: 405 NKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEAN 464
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+AV ++ K + K YVG A+K+ +R L+ +F
Sbjct: 465 KAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 499
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N+ +LY+ +L+ ++ D L +LF G + S +V +D +S G+G+V F +EA
Sbjct: 405 NKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKD-DKDQSKGFGFVCFGTHEEA 463
Query: 79 ARALEMLNFTPLNGKPIRV 97
+A+ ++ +NGKP+ V
Sbjct: 464 NKAVTEMHLKIINGKPLYV 482
>gi|342183460|emb|CCC92940.1| putative polyadenylate-binding protein 1 [Trypanosoma congolense
IL3000]
Length = 552
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 242/377 (64%), Gaps = 18/377 (4%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q SLYVGDL+ +++ QL ++F G +++VRVCRD+ T+RSLGYGYVN+ NA A
Sbjct: 17 QLQVASLYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQRSLGYGYVNYDNANSAT 76
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+A+E +NF + K IR+M+ RDP+LR SG GN+F+KNL +D + L F FG IL
Sbjct: 77 KAMEEMNFKRVGEKCIRIMWQQRDPALRYSGNGNVFVKNLKGEVDSRELSLIFKKFGEIL 136
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM--LLNDKQ--VYVGHFLRKQERDT 195
SCKV D +G S+GYGFV F ++ +A+ AIE +NG+ ++K+ +YV +F+R+ R
Sbjct: 137 SCKVMDDESGNSRGYGFVHFKDDNAAKSAIESMNGVTEYADEKKTALYVANFIRRNARLA 196
Query: 196 EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+ + FTNVY+K + + + ++K F ++G ITSA + +D +G++ F F NFE DD
Sbjct: 197 AL-VANFTNVYIKQILPTVDKAIIEKFFSKFGGITSAAICKDKNGRA--FAFCNFEKHDD 253
Query: 256 AARAVEALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
A +A+E + + + ++ YV +AQ +SER + L+ ++ Q G NLY+
Sbjct: 254 AVKAIEEFHDHEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQCQS------LGNNLYV 307
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
+N D ++ L +LF +G I SC+VM D +G+SRG GFV+F ++A+ AL EM+G+M
Sbjct: 308 RNFDPEFTEKDLNELFKEYGVIRSCRVMTDANGVSRGFGFVSFENADQANAALREMSGRM 367
Query: 371 VVSKPLYVALAQRKEDR 387
+ KPL V +AQR++ R
Sbjct: 368 LNGKPLVVNIAQRRDQR 384
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 155/295 (52%), Gaps = 21/295 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAI 169
++++ +LD AI L + F +G IL+ +V D+ Q S GYG+V +DN SA KA+
Sbjct: 20 VASLYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQRSLGYGYVNYDNANSATKAM 79
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E++N + +K + + Q+RD + S NV+VKNL +L F ++G I
Sbjct: 80 EEMNFKRVGEKCIRIMW----QQRDPALRYSGNGNVFVKNLKGEVDSRELSLIFKKFGEI 135
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S VM D G S+ +GFV+F++ + A A+E++NG V + + + L +
Sbjct: 136 LSCKVMDDESGNSRGYGFVHFKDDNAAKSAIESMNG---------VTEYADEKKTALYVA 186
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+ +N + AA N+YIK + ++D +++ FS FG ITS + +D +G R
Sbjct: 187 NFIRRNARLAALVANFTNVYIKQILPTVDKAIIEKFFSKFGGITSAAICKDKNG--RAFA 244
Query: 350 FVAFSTPEEASRALLEMNGKMV--VSKP---LYVALAQRKEDRRARLQVCLLQCR 399
F F ++A +A+ E + V V++P LYV AQ + +R L+ +QC+
Sbjct: 245 FCNFEKHDDAVKAIEEFHDHEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQCQ 299
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 149/250 (59%), Positives = 192/250 (76%), Gaps = 4/250 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSGAGNIF+KNLDK+ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NG+ L K VYVGHF+++ ER T N +
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKRSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN +S TE L++ F YG ITS +V D K++ F F+N+ +S+ A A+
Sbjct: 191 KFTNLYVKNFPDSVTEAHLKQLFSPYGEITSMIVKT--DNKNRKFCFINYADSESAKNAM 248
Query: 261 EALNGKKFDD 270
E LNGKK D
Sbjct: 249 ENLNGKKITD 258
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 21/260 (8%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ +L++ + L++ F+ G++ S +V D + +S GY +V + N A++A++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N + + L RD + KS N++VKNL +S + L +F +G I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V D GKSK +GFV++E+ + A A+E +NG + K YVG K+SER
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKRSER-------- 185
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
A + + NLY+KN DS+ + LKQLFSP+G ITS V D +R F+
Sbjct: 186 ------ATNDTKFTNLYVKNFPDSVTEAHLKQLFSPYGEITSMIVKTD--NKNRKFCFIN 237
Query: 353 FSTPEEASRALLEMNGKMVV 372
++ E A A+ +NGK +
Sbjct: 238 YADSESAKNAMENLNGKKIT 257
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 86/119 (72%)
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
YVG Q ++ R LK +F+ E+ +K QG NLYIKNLDD+IDD+ LK+LF P+G+IT
Sbjct: 408 YVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTIT 467
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S KVMRD S+G GFV F+ EEA++A+ EM+ K++ KPLYV LA+++E R +RLQ
Sbjct: 468 SAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 526
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 25/188 (13%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV +L+E TE L + F G ++S V RD KS + +VN+ N DA RA++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 264 NGKKFDDKE----WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
N + W S R+ L+ K N+++KNLD SID+
Sbjct: 78 NYTNIKGQPARLMW--------SHRDPSLR------------KSGAGNIFVKNLDKSIDN 117
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L FS FG+I SCKV D G S+ GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVG 177
Query: 380 LAQRKEDR 387
++ +R
Sbjct: 178 HFIKRSER 185
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
NK + N+Y+KNL ++ ++ L++ F YGTITSA VMRD +SK FGFV F ++A
Sbjct: 435 NKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEAN 494
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+AV ++ K + K YVG A+K+ +R L+ +F
Sbjct: 495 KAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 529
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD AID + L + F +G I S KV D QSKG+GFV F +E A KA+ ++
Sbjct: 441 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEM 500
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
+ ++N K +YVG ++++R
Sbjct: 501 HLKIINGKPLYVGLAEKREQR 521
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N+ +LY+ +L+ + D L +LF G + S +V RD +S G+G+V F+ +EA
Sbjct: 435 NKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRD-DKEQSKGFGFVCFAQQEEA 493
Query: 79 ARALEMLNFTPLNGKPIRV 97
+A+ ++ +NGKP+ V
Sbjct: 494 NKAVTEMHLKIINGKPLYV 512
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 149/250 (59%), Positives = 192/250 (76%), Gaps = 4/250 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSGAGNIF+KNLDK+ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NG+ L K VYVGHF++K ER T N +
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN +S TE L++ F +G ITS +V D K++ F F+N+ +S+ A A+
Sbjct: 191 KFTNLYVKNFPDSVTEAHLKQLFSPFGEITSMIVKT--DNKNRKFCFINYADSESAKNAM 248
Query: 261 EALNGKKFDD 270
E LNGKK D
Sbjct: 249 ENLNGKKITD 258
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 141/277 (50%), Gaps = 25/277 (9%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ +L++ + L++ F+ G++ S +V D + +S GY +V + N A++A++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N + + L RD + KS N++VKNL +S + L +F +G I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V D GKSK +GFV++E+ + A A+E +NG + K YVG KKSER
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSER-------- 185
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
A + + NLY+KN DS+ + LKQLFSPFG ITS V D +R F+
Sbjct: 186 ------ATNDTKFTNLYVKNFPDSVTEAHLKQLFSPFGEITSMIVKTD--NKNRKFCFIN 237
Query: 353 FSTPEEASRALLEMNGKMVVS----KPLYVALAQRKE 385
++ E A A+ +NGK + P Y A + E
Sbjct: 238 YADSESAKNAMENLNGKKITDDGQIDPTYDAKKEEAE 274
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 86/119 (72%)
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
YVG Q ++ R LK +F+ E+ +K QG NLYIKNLDD+IDD+ LK+LF P+G+IT
Sbjct: 417 YVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTIT 476
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S KVMRD S+G GFV F+ EEA+RA+ EM+ K++ KPLYV LA+++E R +RLQ
Sbjct: 477 SAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 535
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 25/188 (13%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV +L+E TE L + F G ++S V RD KS + +VN+ N DA RA++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 264 NGKKFDDKE----WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
N + W S R+ L+ K N+++KNLD SID+
Sbjct: 78 NYTNIKGQPARLMW--------SHRDPSLR------------KSGAGNIFVKNLDKSIDN 117
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L FS FG+I SCKV D G S+ GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVG 177
Query: 380 LAQRKEDR 387
+K +R
Sbjct: 178 HFIKKSER 185
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 61/95 (64%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
NK + N+Y+KNL ++ ++ L++ F YGTITSA VMRD +SK FGFV F ++A
Sbjct: 444 NKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEAN 503
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
RAV ++ K + K YVG A+K+ +R L+ +F
Sbjct: 504 RAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 538
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 53/81 (65%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD AID + L + F +G I S KV D QSKG+GFV F +E A +A+ ++
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEM 509
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
+ ++N K +YVG ++++R
Sbjct: 510 HLKIINGKPLYVGLAEKREQR 530
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N+ +LY+ +L+ + D L +LF G + S +V RD +S G+G+V F+ +EA
Sbjct: 444 NKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRD-DKEQSKGFGFVCFALQEEA 502
Query: 79 ARALEMLNFTPLNGKPIRV 97
RA+ ++ +NGKP+ V
Sbjct: 503 NRAVTEMHLKIINGKPLYV 521
>gi|198422488|ref|XP_002121866.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4
(inducible form) [Ciona intestinalis]
Length = 270
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 145/256 (56%), Positives = 195/256 (76%), Gaps = 3/256 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+ + + SLYVGDL +VT++ LY+ F+Q G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SGSTNYPMASLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQP 63
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +N+ P+ G+PIR+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 64 ADAERALDTMNYDPIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 123
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV+ + NG SKGYGFV F+ EE+ +AIEK+NGMLLNDK+V+VG FL + ER
Sbjct: 124 GNILSCKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERIK 182
Query: 196 EINK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
++ + +FTNVY+KN + E+ LQ F +YG + S VMRD DG S+ FGFV +++
Sbjct: 183 KMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSH 242
Query: 254 DDAARAVEALNGKKFD 269
++A AVEA+NG++ +
Sbjct: 243 EEAQAAVEAMNGQEIE 258
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 142/260 (54%), Gaps = 16/260 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D + +S GY +V F A++A++
Sbjct: 13 SLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 72
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N + + + + +RD + KS N+++KNL +S + L +F +G I S
Sbjct: 73 MNYDPIKGRPIRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 128
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V + +G SK +GFV+FE + RA+E +NG +DK+ +VGK +SER
Sbjct: 129 CKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERI------ 181
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
+ M E +F N+YIKN D D++ L+ +F +G + S VMRD G SRG GFV
Sbjct: 182 --KKMGERVRQF--TNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMV 371
A+ + EEA A+ MNG+ +
Sbjct: 238 AYDSHEEAQAAVEAMNGQEI 257
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F + G + S V RD +S + +VNF+ DA RA++
Sbjct: 12 ASLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 71
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+N + + S+R+ L+ K N++IKNLD SID++
Sbjct: 72 TMNYDPIKGRPIRI----MWSQRDPSLR------------KSGVGNIFIKNLDKSIDNKA 115
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L FS FG+I SCKV + +G S+G GFV F T E RA+ ++NG ++ K ++V
Sbjct: 116 LYDTFSAFGNILSCKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKF 174
Query: 382 QRKEDRRARL 391
+ +R ++
Sbjct: 175 LTRSERIKKM 184
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 141/262 (53%), Positives = 191/262 (72%), Gaps = 2/262 (0%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
A N + SLYVG+LE +VT++ L++LF+ +G V S+RVCRD TRRSLGY YVN++N
Sbjct: 44 SAPHNSHTSASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNN 103
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+ RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+A
Sbjct: 104 TADGERALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAA 163
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FGNILSCKVA D S+GYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R
Sbjct: 164 FGNILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQ 223
Query: 195 TEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
++ + K+ FTNVYVKN+ T+E+ + F YG ITSA + RD DG S+ FGFVNF+
Sbjct: 224 SKFDEMKANFTNVYVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSRGFGFVNFQE 283
Query: 253 SDDAARAVEALNGKKFDDKEWY 274
AA+AVE L+ + + Y
Sbjct: 284 HQHAAKAVEELHESELKGQTLY 305
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 156/302 (51%), Gaps = 24/302 (7%)
Query: 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYG 155
V H P + A ++++ L+ ++ L + FS GN+ S +V D + +S GY
Sbjct: 39 VAAPHSAPHNSHTSA-SLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYS 97
Query: 156 FVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTT 215
+V ++N ++A+E+LN L+ + + +RD + K+ NV++KNL +
Sbjct: 98 YVNYNNTADGERALEELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAID 153
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+ L +F +G I S V +D S+ +GFV++E ++ A A++ +NG ++K+ +V
Sbjct: 154 NKALHDTFAAFGNILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFV 213
Query: 276 GKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSI 332
G K +R+ E+K F N+Y+KN+D + DE+ + +F +G I
Sbjct: 214 GHHIPKKDRQSKFDEMKANF-------------TNVYVKNIDPEVTDEEFRTMFENYGPI 260
Query: 333 TSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
TS + RD G+SRG GFV F + A++A+ E++ + + LY L RK R+
Sbjct: 261 TSASLSRDQDGVSRGFGFVNFQEHQHAAKAVEELHESELKGQTLY-PLELRKLA-STRVS 318
Query: 393 VC 394
+C
Sbjct: 319 IC 320
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/250 (58%), Positives = 190/250 (76%), Gaps = 4/250 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSG GNIF+KNLDK+ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NG+ L K VYVG F++K ER T N +
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN +S TE L++ F YG ITS +V D K++ F F+N+ +++ A A+
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKM--DNKNRKFCFINYADAESAKNAM 248
Query: 261 EALNGKKFDD 270
+ LNGKK D
Sbjct: 249 DNLNGKKITD 258
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 136/260 (52%), Gaps = 21/260 (8%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ +L++ + L++ F+ G++ S +V D + +S GY +V + N A++A++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N + + L RD + KS N++VKNL +S + L +F +G I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V D GKSK +GFV++E+ + A A+E +NG + K YVG KKSER
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSER-------- 185
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
A + + NLY+KN DS+ + L+QLF+P+G ITS V D +R F+
Sbjct: 186 ------ATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMD--NKNRKFCFIN 237
Query: 353 FSTPEEASRALLEMNGKMVV 372
++ E A A+ +NGK +
Sbjct: 238 YADAESAKNAMDNLNGKKIT 257
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 84/119 (70%)
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
YVG Q ++ R LK +F+ E +K QG NLYIKNLDD IDD L++LF PFG+IT
Sbjct: 418 YVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTIT 477
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S KVMRD S+G GFV F++ EEA++A+ EM+ K++ KPLYV LA+++E R +RLQ
Sbjct: 478 SAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 536
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 25/188 (13%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV +L+E TE L + F G ++S V RD KS + +VN+ N DA RA++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 264 NGKKFDDKE----WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
N + W S R+ L+ K N+++KNLD SID+
Sbjct: 78 NYTNIKGQPARLMW--------SHRDPSLR------------KSGTGNIFVKNLDKSIDN 117
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L FS FG+I SCKV D G S+ GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVG 177
Query: 380 LAQRKEDR 387
+K +R
Sbjct: 178 PFIKKSER 185
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 60/95 (63%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
NK + N+Y+KNL + + L++ F +GTITSA VMRD +SK FGFV F + ++A
Sbjct: 445 NKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEAN 504
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+AV ++ K + K YVG A+K+ +R L+ +F
Sbjct: 505 KAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 539
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD ID L + F FG I S KV D QSKG+GFV F ++E A KA+ ++
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
+ ++N K +YVG ++++R
Sbjct: 511 HLKIINGKPLYVGLAEKREQR 531
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N N+ +LY+ +L+ + D L +LF G + S +V RD +S G+G+V F++ +
Sbjct: 443 NKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVCFASQE 501
Query: 77 EAARALEMLNFTPLNGKPIRV 97
EA +A+ ++ +NGKP+ V
Sbjct: 502 EANKAVTEMHLKIINGKPLYV 522
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 145/256 (56%), Positives = 193/256 (75%), Gaps = 3/256 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RV RD+ TRRSLGY VNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLR+SG GN+FIKNL+K ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
+D NG SKG+GFV F+ EE+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +F
Sbjct: 132 SDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN + +E L FG +G I S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKA 278
+NGK+ + K YVG+A
Sbjct: 251 MNGKELNGKHIYVGRA 266
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 98/270 (36%), Positives = 152/270 (56%), Gaps = 16/270 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS+ G ILS +V D + +S GY V F+ A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K V + +RD + +S NV++KNL+++ + L +F +G I S
Sbjct: 72 MNFDVIKGKPVRI----MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELG-- 184
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
KE N+YIKN D +DDE L LF FG I S KVM D G S+G GFV
Sbjct: 185 --TGTKEFT------NVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALA 381
+F E+A +A+ EMNGK + K +YV A
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKHIYVGRA 266
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 98/189 (51%), Gaps = 18/189 (9%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S V RD +S + VNFE DA RA++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N K + S+R+ L+ N++IKNL+ +ID++ L
Sbjct: 72 MNFDVIKGKPVRI----MWSQRDPSLRRS------------GVGNVFIKNLNKTIDNKAL 115
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 383 RKEDRRARL 391
+++R A L
Sbjct: 175 SQKEREAEL 183
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ + + D L LF + GQ++SV+V D +S G+G+V+F ++A +A++
Sbjct: 191 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVD 249
Query: 84 MLNFTPLNGKPIRV 97
+N LNGK I V
Sbjct: 250 EMNGKELNGKHIYV 263
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 143/254 (56%), Positives = 194/254 (76%), Gaps = 4/254 (1%)
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-- 197
+CKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 1 ACKVVRDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 59
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA
Sbjct: 60 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 119
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD I
Sbjct: 120 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 179
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLY
Sbjct: 180 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 238
Query: 378 VALAQRKEDRRARL 391
VALAQRKE+R+A L
Sbjct: 239 VALAQRKEERQAHL 252
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 110/264 (41%), Positives = 155/264 (58%), Gaps = 23/264 (8%)
Query: 52 SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSG 110
+ +V RD + S GYG+V+F + A RA+E +N LN + + V + R + G
Sbjct: 1 ACKVVRDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 58
Query: 111 A-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESA 165
A N++IKN + +D + L D F FG LS KV TD +G+SKG+GFV F+ E A
Sbjct: 59 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 118
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSE 212
QKA++++NG LN KQ+YVG +K ER TE+ K KF N+YVKNL +
Sbjct: 119 QKAVDEMNGKELNGKQIYVGRAQKKVERQTEL-KRKFEQMKQDRITRYQGVNLYVKNLDD 177
Query: 213 STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
+E L+K F +GTITSA VM +G G+SK FGFV F + ++A +AV +NG+ K
Sbjct: 178 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 236
Query: 273 WYVGKAQKKSERELELKHQFEQNM 296
YV AQ+K ER+ L +Q+ Q M
Sbjct: 237 LYVALAQRKEERQAHLTNQYMQRM 260
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 101/159 (63%), Gaps = 11/159 (6%)
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
V+RD +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 4 VVRDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-- 60
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
A +F N+YIKN + +DDE+LK LF FG S KVM D SG S+G GFV+F
Sbjct: 61 ------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 112
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
E+A +A+ EMNGK + K +YV AQ+K +R+ L+
Sbjct: 113 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 151
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 58 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 114
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 115 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 173
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 174 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 232
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 233 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 261
>gi|118486179|gb|ABK94932.1| unknown [Populus trichocarpa]
Length = 408
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 144/165 (87%), Positives = 155/165 (93%)
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
MRDGDGKS+CFGFVNFEN+DDAA+A EALNGKKFDDKEW+VGKAQKK ERE+ELK +FEQ
Sbjct: 1 MRDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQ 60
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
+MKEAADKFQGANLYIKNLDDSI DEK+K+LFSPFG+ITSCKVMRDP+GISRGSGFVAFS
Sbjct: 61 SMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFS 120
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
TPEEASRALLEMNGKMV SKPLYVALAQRKEDRRARLQ Q R
Sbjct: 121 TPEEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMR 165
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 12/161 (7%)
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-------- 197
D +G+S+ +GFV F+N + A KA E LNG +DK+ +VG +K ER+ E+
Sbjct: 3 DGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSM 62
Query: 198 ----NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+K + N+Y+KNL +S +E +++ F +GTITS VMRD +G S+ GFV F
Sbjct: 63 KEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTP 122
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
++A+RA+ +NGK K YV AQ+K +R L+ QF Q
Sbjct: 123 EEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQ 163
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 8/129 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD +I + + + FS FG I SCKV D NG S+G GFV F E A +A+ ++
Sbjct: 73 NLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEM 132
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGE------- 225
NG ++ K +YV RK++R + +++F+ + ++ S + G
Sbjct: 133 NGKMVASKPLYVALAQRKEDRRARL-QAQFSQMRPVAMAPSVGRMPMYPPTGPGLGQQIF 191
Query: 226 YGTITSAVV 234
YG A++
Sbjct: 192 YGQGPPAIM 200
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A++F +LY+ +L+ ++ D ++ +LF+ G + S +V RD S G G+V FS +E
Sbjct: 66 ADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRD-PNGISRGSGFVAFSTPEE 124
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A+RAL +N + KP+ V + R
Sbjct: 125 ASRALLEMNGKMVASKPLYVALAQR 149
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 136/231 (58%), Positives = 177/231 (76%), Gaps = 3/231 (1%)
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+ +NF + GKP+R+M+
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 60
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F
Sbjct: 61 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHF 119
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEE 217
+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E +E
Sbjct: 120 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDE 179
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF 268
L+ FG++G S VM D GKSK FGFV+FE +DA +AV+ +NGK+
Sbjct: 180 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 230
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 142/243 (58%), Gaps = 16/243 (6%)
Query: 128 LHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
L++ FS G ILS +V D+ +S GY +V F A++A++ +N ++ K V +
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 60
Query: 187 FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
+RD + KS N+++KNL +S + L +F +G I S V+ D +G SK +G
Sbjct: 61 ----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYG 115
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
FV+FE + A RA+E +NG +D++ +VG+ + + ERE EL + A +F
Sbjct: 116 FVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR--------AKEF--T 165
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N+YIKN + +DDE+LK LF FG S KVM D SG S+G GFV+F E+A +A+ EM
Sbjct: 166 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 225
Query: 367 NGK 369
NGK
Sbjct: 226 NGK 228
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 18/174 (10%)
Query: 219 LQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L + F G I S V RD +S + +VNF+ DA RA++ +N K +
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 60
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
+Q R+ L+ K N++IKNLD SID++ L FS FG+I SCKV
Sbjct: 61 SQ----RDPSLR------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 104
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
+ D +G S+G GFV F T E A RA+ +MNG ++ + ++V + +++R A L
Sbjct: 105 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 157
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S +S G+G+V+F
Sbjct: 158 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFER 214
Query: 75 AQEAARALEMLN 86
++A +A++ +N
Sbjct: 215 HEDAQKAVDEMN 226
>gi|154338582|ref|XP_001565513.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062565|emb|CAM39007.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 552
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 237/380 (62%), Gaps = 24/380 (6%)
Query: 24 TSLYVGDLEANVTDSQ--LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TS++VGDL ++ + + +LF+ + VVSV+VCRD++T+RSLGYGYVNF +A +
Sbjct: 8 TSVFVGDLPVDLPRPEEAINNLFSSIAPVVSVKVCRDIATQRSLGYGYVNFQTTADAEKV 67
Query: 82 LEMLNFTPL-NGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
++ LNFT + G+ IRVM++ RDP RKSGA NIF+K LD A+ KAL FS G +LS
Sbjct: 68 IDALNFTGIAPGRYIRVMFAIRDPLQRKSGANNIFVKKLDAAVSAKALQAAFSRCGRVLS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D G SKGYGFVQF+ + A+ A++ +NG + D +V V F+R+ +R+ KS
Sbjct: 128 CKVALDSEGHSKGYGFVQFETADGAKAALD-MNGAKVGDSEVEVAPFVRRVDREAMAAKS 186
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
F N+Y+KN+ + TE D++ + ++G +TS + +K F FE + A +A+
Sbjct: 187 -FRNIYIKNIKATATEVDMRTTLEKFGKVTSLFLAEHAPFLTK-FALAVFEEHEAAVKAI 244
Query: 261 EALN-----GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ--GANLYIKNL 313
LN G + + V +A KSER+ E K+ A +Q G NLY+K+L
Sbjct: 245 AELNESEESGLTEEAVKLVVCRALSKSERDRE--------RKKTASLYQNHGRNLYVKHL 296
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
D I D+KL+++F+PFG ITSC +MR+ +G RG FV F + A+ A+ E+NG+ + S
Sbjct: 297 PDDITDDKLREIFAPFGKITSCAIMRESNGSLRGFAFVCFEDKQHATAAMRELNGRSLES 356
Query: 374 --KPLYVALAQRKEDRRARL 391
KPLYV+ A++K D R RL
Sbjct: 357 SKKPLYVSQAEQK-DMRIRL 375
>gi|157870420|ref|XP_001683760.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
gi|68126827|emb|CAJ04400.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
Length = 544
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 164/380 (43%), Positives = 233/380 (61%), Gaps = 24/380 (6%)
Query: 24 TSLYVGDLEANVTDSQ--LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TS+YVGDL ++ + + +LF+ + VVSV+VCRD++T+RSLGYGYVNF +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 82 LEMLNFTPL-NGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
++ LN+T + G+ IRVM+S RDP RKSG N+F+K LD AI+ K L FS G +LS
Sbjct: 68 IDALNYTGIAPGRQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFSKCGRVLS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D G SKGYGFVQF+ + + A+E +NG L D +V V F+R+ +R+ KS
Sbjct: 128 CKVALDSAGNSKGYGFVQFETADGTKAALE-MNGSKLGDSEVVVAPFVRRVDREAMAAKS 186
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
F N+Y+KN++ S TE D++ E+G + S + +K F V FE A +A+
Sbjct: 187 -FRNIYIKNITASATEADVKAIVEEFGKVDSLFLSEHARFPTK-FALVAFEEHQAAVQAI 244
Query: 261 EALN-----GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ--GANLYIKNL 313
ALN G + V +A KSER+ E K+AA +Q G NLYIK+L
Sbjct: 245 AALNESEESGLTEKAVKLVVCRALSKSERDRE--------KKKAASLYQNHGRNLYIKHL 296
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV-- 371
D I D++L+++F PFG ITSC +M++P+G +G FV F + AS AL +NG +
Sbjct: 297 PDDITDDRLREIFEPFGKITSCAIMKEPNGTLKGFAFVCFEDKQHASAALRSLNGHPLEH 356
Query: 372 VSKPLYVALAQRKEDRRARL 391
+KPLYV+ A++K D R RL
Sbjct: 357 SAKPLYVSHAEQK-DMRIRL 375
>gi|398016302|ref|XP_003861339.1| poly(A)-binding protein, putative [Leishmania donovani]
gi|322499565|emb|CBZ34638.1| poly(A)-binding protein, putative [Leishmania donovani]
Length = 544
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 236/380 (62%), Gaps = 24/380 (6%)
Query: 24 TSLYVGDLEANVTDSQ--LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TS+YVGDL ++ + + +LF+ + VVSV+VCRD++T+RSLGYGYVNF +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 82 LEMLNFTPL-NGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
++ LN+T + G+ IRVM+S RDP RKSG N+F+K LD AI+ K L F+ G +LS
Sbjct: 68 IDALNYTGIAPGRQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D G SKGYGFVQF+ E A+ A++ +NG L D +V V F+R+ +R+ KS
Sbjct: 128 CKVALDSAGNSKGYGFVQFETAEGAKAALD-MNGSKLGDSEVVVAPFVRRVDREVMAAKS 186
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
F N+Y+KN++ + TE D++ + ++G + S + +K F V FE + A +A+
Sbjct: 187 -FRNIYIKNIAAAATEADVKAAAEKFGKVNSLFLSEHAPFPTK-FALVAFEEHEAAVQAI 244
Query: 261 EALN-----GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ--GANLYIKNL 313
ALN G + V +A KSER+ E K+AA +Q G NLY+K+L
Sbjct: 245 AALNESEESGLTEKAAKLVVCRALSKSERDRE--------KKKAASLYQNHGRNLYVKHL 296
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV-- 371
D I D++L+++F PFG ITSC +M++P+G +G FV F + AS AL +NG+ +
Sbjct: 297 PDDITDDRLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGQPLEH 356
Query: 372 VSKPLYVALAQRKEDRRARL 391
KPLYV+ A++K D R RL
Sbjct: 357 SKKPLYVSHAEQK-DMRIRL 375
>gi|340386042|ref|XP_003391517.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Amphimedon queenslandica]
Length = 393
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/256 (52%), Positives = 190/256 (74%), Gaps = 1/256 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V ++ L+D F++ G V+S+ VCRDL T+RSLGY Y+ F +A RA +
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N+ P+ G+P +M+S RDPSLR+S AG+IFIKNL+++IDHKAL+DTFSAFGNILSCKVA
Sbjct: 72 MNYEPIKGQPCYIMWSQRDPSLRRSRAGHIFIKNLERSIDHKALYDTFSAFGNILSCKVA 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TDLNGQSKG GFV FD +E+A AIEK+NG LLN+++V+VG F+ +++R +TN
Sbjct: 132 TDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFIPRKDRSHTGFNQHYTN 191
Query: 205 -VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
V+VKN E T+E L F ++G+I +AVVM+D +G SK FGFV+FE+ + A+ AV+A+
Sbjct: 192 VVFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFVSFESHEAASAAVQAV 251
Query: 264 NGKKFDDKEWYVGKAQ 279
+ + ++ Y +A
Sbjct: 252 HSSIVNGRQVYCSRAH 267
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 140/271 (51%), Gaps = 16/271 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L ++ L D FS G +LS V DL +S GY ++ F A++A +
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N + + Y+ +RD + +S+ ++++KNL S + L +F +G I S
Sbjct: 72 MNYEPIKGQPCYI----MWSQRDPSLRRSRAGHIFIKNLERSIDHKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D +G+SK GFV+F+ + A A+E +NG+ ++++ +VGK + +R +Q
Sbjct: 128 CKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFIPRKDRSHTGFNQ 187
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
N+ +++KN + DE L F FGSI + VM+D G+S+ GFV
Sbjct: 188 HYTNV-----------VFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+F + E AS A+ ++ +V + +Y + A
Sbjct: 237 SFESHEAASAAVQAVHSSIVNGRQVYCSRAH 267
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEA 262
++YV +L E DL F + G + S V RD K S + ++ F+ DA RA +
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N + + Y+ S+R+ L+ + + +++IKNL+ SID + L
Sbjct: 72 MNYEPIKGQPCYI----MWSQRDPSLR------------RSRAGHIFIKNLERSIDHKAL 115
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG+I SCKV D +G S+G GFV F E A A+ ++NG+++ ++ ++V
Sbjct: 116 YDTFSAFGNILSCKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFI 175
Query: 383 RKEDR 387
++DR
Sbjct: 176 PRKDR 180
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLE 365
+LY+ +L +++ L FS G + S V RD + S G ++ F P +A RA
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 366 MNGKMVVSKPLYVALAQRKED-RRAR 390
MN + + +P Y+ +QR RR+R
Sbjct: 72 MNYEPIKGQPCYIMWSQRDPSLRRSR 97
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
NQ T ++V + + TD LY+ F + G + + V +D + S +G+V+F + + A
Sbjct: 186 NQHYTNVVFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKD-NEGVSKDFGFVSFESHEAA 244
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPS 105
+ A++ ++ + +NG+ + +H PS
Sbjct: 245 SAAVQAVHSSIVNGRQVYCSRAHSMPS 271
>gi|330843410|ref|XP_003293648.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
gi|325076001|gb|EGC29827.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
Length = 735
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 160/374 (42%), Positives = 238/374 (63%), Gaps = 34/374 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TSLYVGDL ++V + L +LF+++G+ + S+ VCRD +T RSLGY YVNF N +A RA
Sbjct: 120 TSLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLGYAYVNFYNNHDAERA 179
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ LN++ ++GKP R+M+S+RDP+ RK+ GN+F+KNL+KA+D+ L+D FS+FGNILSC
Sbjct: 180 LDTLNYSMIHGKPCRIMWSYRDPTKRKTNVGNVFVKNLEKAVDNAMLYDVFSSFGNILSC 239
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KV + G SKGYG+V F+ ES+ KAIE++NG L+ K ++ F+ K ER NK
Sbjct: 240 KVEYE-KGISKGYGYVHFETSESSGKAIERINGTLVLGKPIFCEPFVAKVERYKVENK-- 296
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR--A 259
V+ +N ES T+E +Q+ ++G I + D GKSK G V F+N +DA + A
Sbjct: 297 ---VFFRNADESVTQEMIQEELSKFGEIEICTLKIDSTGKSKGLGTVEFKNCEDAQKLLA 353
Query: 260 VEA----LNGKK--FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
VEA +NGK FD + + K ER EL+ K+ D+ L++ N+
Sbjct: 354 VEADSIQINGKPITFD-------RVKNKIERVTELR-------KKTTDQ----TLFLSNI 395
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
D+SI+ E +K+ FS G+I CK+++D SG ++G GF+ FS EA++AL +NG +
Sbjct: 396 DESIEKETIKEEFSKHGAIIGCKIVQDESGKNKGYGFITFSEVSEANKALEALNGFTFGN 455
Query: 374 KPLYVALAQRKEDR 387
K + V+L+ KE +
Sbjct: 456 KQITVSLSSNKEQQ 469
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 95/176 (53%), Gaps = 7/176 (3%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM- 84
++ + + +VT + + ++ G++ + D ST +S G G V F N ++A + L +
Sbjct: 297 VFFRNADESVTQEMIQEELSKFGEIEICTLKID-STGKSKGLGTVEFKNCEDAQKLLAVE 355
Query: 85 LNFTPLNGKPI---RVMYS-HRDPSLRKSGAG-NIFIKNLDKAIDHKALHDTFSAFGNIL 139
+ +NGKPI RV R LRK +F+ N+D++I+ + + + FS G I+
Sbjct: 356 ADSIQINGKPITFDRVKNKIERVTELRKKTTDQTLFLSNIDESIEKETIKEEFSKHGAII 415
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
CK+ D +G++KGYGF+ F A KA+E LNG +KQ+ V K+++ T
Sbjct: 416 GCKIVQDESGKNKGYGFITFSEVSEANKALEALNGFTFGNKQITVSLSSNKEQQLT 471
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDPSGI-SRG 347
QF N + + Q +LY+ +L +++ L +LFS G +I S V RD + S G
Sbjct: 109 QFPPNYQPS----QLTSLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLG 164
Query: 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+V F +A RAL +N M+ KP + + R +R
Sbjct: 165 YAYVNFYNNHDAERALDTLNYSMIHGKPCRIMWSYRDPTKR 205
>gi|146088402|ref|XP_001466041.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
gi|134070143|emb|CAM68476.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
Length = 544
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 162/380 (42%), Positives = 235/380 (61%), Gaps = 24/380 (6%)
Query: 24 TSLYVGDLEANVTDSQ--LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TS+YVGDL ++ + + +LF+ + VVSV+VCRD++T+RSLGYGYVNF +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 82 LEMLNFTPL-NGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
++ LN+T + G IRVM+S RDP RKSG N+F+K LD AI+ K L F+ G +LS
Sbjct: 68 IDALNYTGIAPGLQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D G SKGYGFVQF+ E A+ A++ +NG L D +V V F+R+ +R+ KS
Sbjct: 128 CKVALDSAGNSKGYGFVQFETAEGAKAALD-MNGSKLGDSEVVVAPFVRRVDREVMAAKS 186
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
F N+Y+KN++ + TE D++ + ++G + S + +K F V FE + A +A+
Sbjct: 187 -FRNIYIKNIAAAATEADVKAAAEKFGKVNSLFLSEHAPFPTK-FALVAFEEHEAAVQAI 244
Query: 261 EALN-----GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ--GANLYIKNL 313
ALN G + V +A KSER+ E K+AA +Q G NLY+K+L
Sbjct: 245 AALNESEESGLTEKAAKLVVCRALSKSERDRE--------KKKAASLYQNHGRNLYVKHL 296
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV-- 371
D I D+KL+++F PFG ITSC +M++P+G +G FV F + AS AL +NG+ +
Sbjct: 297 PDDITDDKLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGQPLEH 356
Query: 372 VSKPLYVALAQRKEDRRARL 391
KPLYV+ A++K D R RL
Sbjct: 357 SKKPLYVSHAEQK-DMRIRL 375
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 147/345 (42%), Positives = 201/345 (58%), Gaps = 65/345 (18%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N G G + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+++RRSLGY Y
Sbjct: 2 NATGAG-----YPLASLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNLD +ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV------- 182
DTFS FGNILSCKV D +G S+G+GFV F+ E+A +AI +NGMLLND++V
Sbjct: 117 DTFSTFGNILSCKVVCDEHG-SRGFGFVHFETREAASQAISTMNGMLLNDRKVGAQPCCP 175
Query: 183 ---------------------------------------YVGHFLRKQERDTE------- 196
YVG ++ ER +E
Sbjct: 176 AGRVGSGKRPPSGRSRPAGPVPAQAVTSMNGKELNGRVLYVGRAQKRTERQSELKRKFEQ 235
Query: 197 -----INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+N+ + N+YVKNL + +E L+K F YGTITSA VM + G SK FGFV F
Sbjct: 236 IKQERVNRYQGVNLYVKNLDDCIDDEKLRKEFSPYGTITSAKVMTE-SGHSKGFGFVCFS 294
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+ ++A +AV +NG+ K YV AQ+K ER+ L +Q+ +
Sbjct: 295 SPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMHRL 339
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 195/334 (58%), Gaps = 57/334 (17%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEE 163
+GAG ++++ +L + L++ FS G+I+S +V D+ + S GY ++ F
Sbjct: 4 TGAGYPLASLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEVIKGRPIRIMW----SQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA--------------------------- 256
+G I S V+ D G S+ FGFV+FE + A
Sbjct: 120 STFGNILSCKVVCDEHG-SRGFGFVHFETREAASQAISTMNGMLLNDRKVGAQPCCPAGR 178
Query: 257 -------------------ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
A+AV ++NGK+ + + YVG+AQK++ER+ ELK +FEQ +
Sbjct: 179 VGSGKRPPSGRSRPAGPVPAQAVTSMNGKELNGRVLYVGRAQKRTERQSELKRKFEQIKQ 238
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPE 357
E +++QG NLY+KNLDD IDDEKL++ FSP+G+ITS KVM + SG S+G GFV FS+PE
Sbjct: 239 ERVNRYQGVNLYVKNLDDCIDDEKLRKEFSPYGTITSAKVMTE-SGHSKGFGFVCFSSPE 297
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
EA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 298 EATKAVTEMNGRIVSTKPLYVALAQRKEERKAIL 331
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 114/256 (44%), Gaps = 70/256 (27%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D R G+G+V+F + A++A
Sbjct: 97 GVGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETREAASQA 154
Query: 82 LEMLNFTPLNGKPI---------RVMYSHRDPSLRKSGAG-------------------- 112
+ +N LN + + RV R PS R AG
Sbjct: 155 ISTMNGMLLNDRKVGAQPCCPAGRVGSGKRPPSGRSRPAGPVPAQAVTSMNGKELNGRVL 214
Query: 113 ---------------------------------NIFIKNLDKAIDHKALHDTFSAFGNIL 139
N+++KNLD ID + L FS +G I
Sbjct: 215 YVGRAQKRTERQSELKRKFEQIKQERVNRYQGVNLYVKNLDDCIDDEKLRKEFSPYGTIT 274
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
S KV T+ +G SKG+GFV F + E A KA+ ++NG +++ K +YV RK+ER K
Sbjct: 275 SAKVMTE-SGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER-----K 328
Query: 200 SKFTNVYVKNLSESTT 215
+ TN Y+ LS T
Sbjct: 329 AILTNQYMHRLSTIRT 344
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 137/255 (53%), Positives = 190/255 (74%), Gaps = 6/255 (2%)
Query: 141 CKVAT--DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
C+VA D NG S+G+GFV F+ +E+A +AI +NGMLLND++V+VGHF +QER+ E+
Sbjct: 111 CRVAVVCDENG-SRGFGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFKSRQEREAELG 169
Query: 199 KS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+FTN+YVKN E ++ L++ F E+G S VM D +G S+ FGFVNFE ++A
Sbjct: 170 ARALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEA 229
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
+AV ++NGK + YVG+AQK++ER+ ELK +FEQ +E +++QG NLY+KNLDD
Sbjct: 230 QKAVNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLYVKNLDDV 289
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
IDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPL
Sbjct: 290 IDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 348
Query: 377 YVALAQRKEDRRARL 391
YVALAQRKE+R+A L
Sbjct: 349 YVALAQRKEERKAIL 363
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 145/260 (55%), Gaps = 22/260 (8%)
Query: 55 VCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-- 111
VC + +R G+G+V+F + A +A+ +N LN + + V + R + GA
Sbjct: 116 VCDENGSR---GFGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFKSRQEREAELGARA 172
Query: 112 ---GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
NI++KN ++ +D + L + FS FG LS KV D NG S+G+GFV F+ E AQKA
Sbjct: 173 LEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEAQKA 232
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTE------------INKSKFTNVYVKNLSESTTE 216
+ +NG L + +YVG ++ ER E +N+ + N+YVKNL + +
Sbjct: 233 VNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLYVKNLDDVIDD 292
Query: 217 EDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276
E L+K F YG ITSA VM +G G SK FGFV F + ++A +AV +NG+ K YV
Sbjct: 293 EKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 351
Query: 277 KAQKKSERELELKHQFEQNM 296
AQ+K ER+ L +Q+ Q +
Sbjct: 352 LAQRKEERKAILTNQYMQRI 371
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 98/165 (59%), Gaps = 11/165 (6%)
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
T+ V+ D +G S+ FGFV+FE + A +A+ +NG +D++ +VG + + ERE E
Sbjct: 109 TLCRVAVVCDENG-SRGFGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFKSRQEREAE 167
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347
L A + N+Y+KN ++ +DD+ L++LFS FG S KVM D +G SRG
Sbjct: 168 L----------GARALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRG 217
Query: 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
GFV F EEA +A+ MNGK + + LYV AQ++ +R+ L+
Sbjct: 218 FGFVNFEKHEEAQKAVNSMNGKALGGRVLYVGRAQKRTERQGELK 262
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 118/216 (54%), Gaps = 31/216 (14%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++YV + E +V D L +LF++ G+ +SV+V D S G+G+VNF
Sbjct: 169 GARALEF--TNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVD-ENGHSRGFGFVNFEK 225
Query: 75 AQEAARALEMLNFTPLNGKPIRVMY-------SHRDPSLRKS------------GAGNIF 115
+EA +A+ +N L G RV+Y + R L++ N++
Sbjct: 226 HEEAQKAVNSMNGKALGG---RVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLY 282
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
+KNLD ID + L FS +G I S KV T+ G SKG+GFV F + E A KA+ ++NG
Sbjct: 283 VKNLDDVIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGR 341
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
+++ K +YV RK+ER K+ TN Y++ +S
Sbjct: 342 IVSTKPLYVALAQRKEER-----KAILTNQYMQRIS 372
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 184/242 (76%), Gaps = 3/242 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVGDL+A+VT++ LY++FN + V SVR+CRD TRRSLGY YVN+++ +A RAL
Sbjct: 11 SASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LNFT + G+P R+M+ RDP+ R++ GN+F+KNLDK+ID+K L DTFS FGNI+SCK
Sbjct: 71 DTLNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCK 130
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ATD+ G+S GYGF+ F++ +SA++AI +LNG +L D+ +YVG F +K ER +E +K+ F
Sbjct: 131 IATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKT-F 189
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVK++ +S TE+ L K FG YG I+S V+ D G+ FGFVNFEN D A AV A
Sbjct: 190 TNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKGRP--FGFVNFENPDSAKAAVAA 247
Query: 263 LN 264
L+
Sbjct: 248 LH 249
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 209/376 (55%), Gaps = 35/376 (9%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+++V +L+ ++ + L+D F+ G ++S ++ D+ + SLGYG+++F +A A A+
Sbjct: 101 NVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGK-SLGYGFIHFEHADSAKEAISR 159
Query: 85 LNFTPLNGKPIRV--------MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
LN L +PI V +S +D + N+++K++ K+ L+ F +G
Sbjct: 160 LNGAVLGDRPIYVGKFQKKAERFSEKDKTFT-----NVYVKHIPKSWTEDLLYKIFGVYG 214
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I S + +D G + +GFV F+N +SA+ A+ L+ L+ VG L +
Sbjct: 215 KISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAALHNALVTP----VGVELDSTAETSA 268
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
N++ SE++++++ ++ + T +S +D G S N + S D
Sbjct: 269 DNEAGAD-------SETSSKQESGEASNKKQTASSET-SKDSSGTSNEEFAQNEDGSADK 320
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
+ + YV +AQKK+ER++ LK Q E +KE+ ++QG NLY+KNL DS
Sbjct: 321 NVSADV------QPNRLYVSRAQKKNERQVVLKSQHEA-VKESHQRYQGVNLYVKNLADS 373
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
I++E L+ +F PFG+++S + D SG+SRG GFV+F +P+EA++A+ EM+ K+V KPL
Sbjct: 374 INEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPL 433
Query: 377 YVALAQRKEDRRARLQ 392
YV L +RKE R RLQ
Sbjct: 434 YVGLHERKEQRALRLQ 449
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 128/283 (45%), Gaps = 34/283 (12%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV + + T+ LY +F G++ S+ + D R +G+VNF N A A+
Sbjct: 190 TNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKGRP---FGFVNFENPDSAKAAVA 246
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
L+ + + + + + ++GA D K S S +
Sbjct: 247 ALHNALVTPVGVELDSTAETSADNEAGA--------DSETSSKQESGEASNKKQTASSET 298
Query: 144 ATDLNGQSKGYGFVQFDNEESAQK---AIEKLNGMLLNDKQVYVGHFLRKQERDTEI--- 197
+ D +G S NEE AQ + +K + ++YV +K ER +
Sbjct: 299 SKDSSGTS---------NEEFAQNEDGSADKNVSADVQPNRLYVSRAQKKNERQVVLKSQ 349
Query: 198 --------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
+ + N+YVKNL++S EEDL+ F +GT++S + D G S+ FGFV+
Sbjct: 350 HEAVKESHQRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVS 409
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
F + D+A +A+ ++ K K YVG ++K +R L L+ +
Sbjct: 410 FLSPDEATKAITEMHLKLVRGKPLYVGLHERKEQRALRLQQRI 452
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 184/242 (76%), Gaps = 3/242 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVGDL+A+VT++ LY++FN + V SVR+CRD TRRSLGY YVN+++ +A RAL
Sbjct: 11 SASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LNFT + G+P R+M+ RDP+ R++ GN+F+KNLDK+ID+K L DTFS FGNI+SCK
Sbjct: 71 DTLNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCK 130
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ATD+ G+S GYGF+ F++ +SA++AI +LNG +L D+ +YVG F +K ER +E +K+ F
Sbjct: 131 IATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKT-F 189
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVK++ +S TE+ L K FG YG I+S V+ D G+ FGFVNFEN D A AV A
Sbjct: 190 TNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKGRP--FGFVNFENPDSAKAAVAA 247
Query: 263 LN 264
L+
Sbjct: 248 LH 249
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 205/376 (54%), Gaps = 35/376 (9%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+++V +L+ ++ + L+D F+ G ++S ++ D+ + SLGYG+++F +A A A+
Sbjct: 101 NVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGK-SLGYGFIHFEHADSAKEAISR 159
Query: 85 LNFTPLNGKPIRV--------MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
LN L +PI V +S +D + N+++K++ K+ L+ F +G
Sbjct: 160 LNGAVLGDRPIYVGKFQKKAERFSEKDKTFT-----NVYVKHIPKSWTEDLLYKIFGVYG 214
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I S + +D G + +GFV F+N +SA+ A+ L+ L+ V E
Sbjct: 215 KISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAALHNALVTPVGV-------------E 259
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
++ + T V + ++S T S E G ++ G+ G N E++ +
Sbjct: 260 LDSTAETPVDNEAGADSETS-----SKQESGEASNKKQTASGEASKDSSGTSNEESAQNE 314
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
+ + YV +AQKK+ER++ LK Q E +KE+ ++QG NLY+KNL DS
Sbjct: 315 DGSADKNVSADVQPNRLYVSRAQKKNERQVVLKSQHEA-VKESHQRYQGVNLYVKNLADS 373
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
I++E L+ +F PFG+++S + D SG+SRG GFV+F +P+EA++A+ EM+ K+V KPL
Sbjct: 374 INEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPL 433
Query: 377 YVALAQRKEDRRARLQ 392
YV L +RKE R RLQ
Sbjct: 434 YVGLHERKEQRALRLQ 449
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 139/271 (51%), Gaps = 22/271 (8%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ +LD + L++ F++ + S ++ D L +S GY +V +++ A++A+
Sbjct: 11 SASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
+ LN + + + LR D ++ NV+VKNL +S + L +F +G I
Sbjct: 71 DTLNFTCIRGRPCRIMWCLR----DPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNI 126
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S + D +GKS +GF++FE++D A A+ LNG D+ YVGK QKK+ER E
Sbjct: 127 MSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKD 186
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
F N+Y+K++ S ++ L ++F +G I+S + D G R G
Sbjct: 187 KTF-------------TNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKG--RPFG 231
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
FV F P+ A A+ ++ +V P+ V L
Sbjct: 232 FVNFENPDSAKAAVAALHNALVT--PVGVEL 260
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 34/283 (12%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV + + T+ LY +F G++ S+ + D R +G+VNF N A A+
Sbjct: 190 TNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKGRP---FGFVNFENPDSAKAAVA 246
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
L+ + + + + P ++GA D K S S +
Sbjct: 247 ALHNALVTPVGVELDSTAETPVDNEAGA--------DSETSSKQESGEASNKKQTASGEA 298
Query: 144 ATDLNGQSKGYGFVQFDNEESAQK---AIEKLNGMLLNDKQVYVGHFLRKQERDTEI--- 197
+ D +G S NEESAQ + +K + ++YV +K ER +
Sbjct: 299 SKDSSGTS---------NEESAQNEDGSADKNVSADVQPNRLYVSRAQKKNERQVVLKSQ 349
Query: 198 --------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
+ + N+YVKNL++S EEDL+ F +GT++S + D G S+ FGFV+
Sbjct: 350 HEAVKESHQRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVS 409
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
F + D+A +A+ ++ K K YVG ++K +R L L+ +
Sbjct: 410 FLSPDEATKAITEMHLKLVRGKPLYVGLHERKEQRALRLQQRI 452
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 17/184 (9%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV +L TE L + F ++S + RD +S + +VN+ + DA RA++ L
Sbjct: 14 LYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTL 73
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N + + + A+ + N+++KNLD SID++ L
Sbjct: 74 NFTCIRGRPCRIMWCLRDP----------------ASRRNNDGNVFVKNLDKSIDNKTLF 117
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
FS FG+I SCK+ D G S G GF+ F + A A+ +NG ++ +P+YV Q+
Sbjct: 118 DTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQK 177
Query: 384 KEDR 387
K +R
Sbjct: 178 KAER 181
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 131/253 (51%), Positives = 184/253 (72%), Gaps = 5/253 (1%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GG QF SLY GDL +V ++ LY++FN +G V S+RVCRD TR+SLGY Y+NF
Sbjct: 41 GGVPTQQFA--SLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFH 98
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N +A RAL+ LN++P+NG+P R+M+SHRDP+LR+SGAGN+++KNLD+ ID+KAL+DTFS
Sbjct: 99 NVADAERALDTLNYSPINGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFS 158
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FGNILSCKVA +G+S+G+GFV F+++ESA+ AI KLNGM + +K VYV F + +R
Sbjct: 159 LFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADR 218
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
++ + FTNVY+K++ S TEE +++ FG +G ITS + D G+ F FVNF
Sbjct: 219 -SDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGRR--FAFVNFAEF 275
Query: 254 DDAARAVEALNGK 266
+ A AVE ++G+
Sbjct: 276 EQARAAVEDMDGE 288
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 132/258 (51%), Gaps = 20/258 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
+++ +L ++ L++ F+ G + S +V D + +S GY ++ F N A++A++
Sbjct: 50 SLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 109
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN +N + L RD + +S NVYVKNL + + L +F +G I S
Sbjct: 110 LNYSPINGRPCR----LMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILS 165
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V DGKS+ FGFV+FE+ + A A+ LNG + +K YV + +K ++R
Sbjct: 166 CKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADRSDGSPKN 225
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
F N+YIK++ S +EK+++ F FG ITS + DP G R FV
Sbjct: 226 F-------------TNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKG--RRFAFV 270
Query: 352 AFSTPEEASRALLEMNGK 369
F+ E+A A+ +M+G+
Sbjct: 271 NFAEFEQARAAVEDMDGE 288
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDD 255
+ +F ++Y +L+ E L + F G + S V RD KS + ++NF N D
Sbjct: 43 VPTQQFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVAD 102
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA-NLYIKNLD 314
A RA++ LN + + L H ++ A + GA N+Y+KNLD
Sbjct: 103 AERALDTLNYSPINGRPC-----------RLMWSH------RDPALRRSGAGNVYVKNLD 145
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
+ID++ L FS FG+I SCKV P G SRG GFV F + E A A+ ++NG + K
Sbjct: 146 RNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEK 205
Query: 375 PLYVALAQRKEDR 387
+YVA ++ DR
Sbjct: 206 TVYVAQFKKTADR 218
>gi|401423147|ref|XP_003876060.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492301|emb|CBZ27575.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 544
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 159/380 (41%), Positives = 232/380 (61%), Gaps = 24/380 (6%)
Query: 24 TSLYVGDLEANVTDSQ--LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TS+YVGDL ++ + + +LF+ + VVSV+VCRD++T+RSLGYGYVNF +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTPADAEKV 67
Query: 82 LEMLNFTPLN-GKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
++ LN+T + G+ IRVM+S RDP RKSG N+F+K LD A++ K L F+ G +LS
Sbjct: 68 IDALNYTGITPGRQIRVMFSIRDPIQRKSGMNNVFVKKLDTAVNAKELQAAFTKCGRVLS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D G SKGYGFVQF+ + A+ A+E ++G L D +V V FLR+ +R+ KS
Sbjct: 128 CKVALDSAGNSKGYGFVQFETADGAKAALE-MDGSKLGDCEVVVAPFLRRVDREVMAAKS 186
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
F N+Y+KNL + E D++ + +G + S + +K F V FE + A +A+
Sbjct: 187 -FRNIYIKNLKATVAEADVKTTVETFGKVNSLFLSEHAPFPTK-FALVAFEEHEAAVKAI 244
Query: 261 EALN-----GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ--GANLYIKNL 313
ALN G + V +A KSER+ E K+AA +Q G NLY+K+L
Sbjct: 245 AALNESEESGLTEKAAKLVVCRALSKSERDRE--------KKKAASLYQNHGRNLYVKHL 296
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV-- 371
D I D++L+++F+PFG ITSC +M++P+G +G FV F + AS AL +NG +
Sbjct: 297 PDDITDDRLREIFAPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGHSLDN 356
Query: 372 VSKPLYVALAQRKEDRRARL 391
K LYV+ A++K D R RL
Sbjct: 357 SKKLLYVSQAEQK-DMRIRL 375
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 140/259 (54%), Positives = 186/259 (71%), Gaps = 4/259 (1%)
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS-- 200
VA D SKGYGFV F+ EESAQKAIEK+NGMLL K+VYVG F + R E+ ++
Sbjct: 1 VANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETAR 60
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVY+KN ++ +E L+K F ++G ITSA VM D DGKSK FGFV FEN +DA +AV
Sbjct: 61 RFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAV 120
Query: 261 EALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
++ + +++ YV +AQKK+ER ELK ++EQ E ++QG NLY+KNLDD+++
Sbjct: 121 TEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVN 180
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D+ LKQ F +G ITS KVM D +G S+G GFV F P+EA++A+ EMNGKM+ +KPLYV
Sbjct: 181 DDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYV 240
Query: 379 ALAQRKEDRRARLQVCLLQ 397
ALAQRKEDR+A+L +Q
Sbjct: 241 ALAQRKEDRKAQLASQYMQ 259
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 145/253 (57%), Gaps = 20/253 (7%)
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIK 117
S GYG+V+F + A +A+E +N L GK + V + R LR+ G N++IK
Sbjct: 9 SKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIK 68
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
N +D +AL FS FG I S V D +G+SKG+GFV F+N E A+KA+ +++ L
Sbjct: 69 NFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYEL 128
Query: 178 --NDKQVYVGHFLRKQERDTEINKS------------KFTNVYVKNLSESTTEEDLQKSF 223
++++YV +K ER E+ + + N+YVKNL ++ ++ L+++F
Sbjct: 129 PGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNF 188
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
YG ITSA VM D +G+SK FGFV FE D+A +AV +NGK K YV AQ+K +
Sbjct: 189 EAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKED 248
Query: 284 RELELKHQFEQNM 296
R+ +L Q+ Q +
Sbjct: 249 RKAQLASQYMQRL 261
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 28/216 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G A +F T++Y+ + + L LF++ G++ S V D + +S G+G+V F N
Sbjct: 56 GETARRF--TNVYIKNFADELDKEALEKLFSKFGKITSAAVMVD-ADGKSKGFGFVAFEN 112
Query: 75 AQEAARALEMLNFTPLNGKPIRVMY-------SHRDPSLRKS------------GAGNIF 115
++A +A+ ++ L G R +Y + R L++ N++
Sbjct: 113 PEDAEKAVTEMHEYELPGTE-RKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLY 171
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
+KNLD ++ L F A+G I S KV D NG+SKG+GFV F+ + A KA+ ++NG
Sbjct: 172 VKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGK 231
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
++ K +YV RK++R K++ + Y++ L+
Sbjct: 232 MMCTKPLYVALAQRKEDR-----KAQLASQYMQRLA 262
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAARALEM 84
LYV +L+ V D L F G++ S +V C D RS G+G+V F EA +A+
Sbjct: 170 LYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDD--NGRSKGFGFVCFEKPDEATKAVTE 227
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
+N + KP+ V + R RK+ + +++ L H A
Sbjct: 228 MNGKMMCTKPLYVALAQRKED-RKAQLASQYMQRLASIRMHNA 269
>gi|91805911|gb|ABE65684.1| polyadenylate-binding protein [Arabidopsis thaliana]
Length = 267
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 138/257 (53%), Positives = 190/257 (73%), Gaps = 6/257 (2%)
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+E+LN+ L GKP+R+M+S RDPS R SG GN+F+KNLD++ID+K L D FSAFG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KVA D +G SKGYGFVQF ++ S A NG L+ ++ ++V F+ + + D KS+
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWD----KSR 116
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKNL E+ T+ DL++ FGE+G ITSAVVM+DG+GKS+ FGFVNFE ++ A A+
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFE-QNMKEAADKFQGANLYIKNLDDSIDD 319
E +NG D+KE +VG+AQ+K+ R +LK +FE + + +G NLY+KNLDDS+D+
Sbjct: 177 EKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 320 EKLKQLFSPFGSITSCK 336
KL++LFS FG+ITSCK
Sbjct: 237 TKLEELFSEFGTITSCK 253
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 17/226 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + QL D+F+ G+V+S +V RD S S GYG+V F + A
Sbjct: 29 GRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASG-VSKGYGFVQFYSDLSVYTA 87
Query: 82 LEMLNFTPLNGKPIRVM-YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
N T + + I V + R + N+++KNL + L F FG I S
Sbjct: 88 CNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITS 147
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
V D G+S+ +GFV F+ E+A AIEK+NG+++++K+++VG RK R TE K+
Sbjct: 148 AVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR-TEDLKA 206
Query: 201 KF--------------TNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
KF N+YVKNL +S L++ F E+GTITS
Sbjct: 207 KFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSC 252
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 95/205 (46%), Gaps = 23/205 (11%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
ERD S NV+VKNL ES + L F +G + S V RD G SK +GFV F
Sbjct: 20 ERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFY 79
Query: 252 NSDDAARAVEALNGKKFDDKEW----YVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
+ A NG ++ +V + Q R N
Sbjct: 80 SDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVF-------------------TN 120
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
+Y+KNL ++ D LK+LF FG ITS VM+D G SR GFV F E A A+ +MN
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQ 392
G +V K L+V AQRK +R L+
Sbjct: 181 GVVVDEKELHVGRAQRKTNRTEDLK 205
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 18/140 (12%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +L TD+ L LF + G++ S V +D +S +G+VNF A+ A A+E
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIE 177
Query: 84 MLNFTPLNGKPIRVMYSHRDPS-----------------LRKSGAGNIFIKNLDKAIDHK 126
+N ++ K + V + R + ++ N+++KNLD ++D+
Sbjct: 178 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 127 ALHDTFSAFGNILSCKVATD 146
L + FS FG I SCK A +
Sbjct: 238 KLEELFSEFGTITSCKYACN 257
>gi|281204064|gb|EFA78260.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 617
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/410 (38%), Positives = 237/410 (57%), Gaps = 48/410 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TSLYVGDL +V + L +LF+++G+ V S+ VCRD T RSLGY YVNF N+ +A RA
Sbjct: 138 TSLYVGDLAPDVNEIMLSELFSKVGRSAVASIHVCRDSITFRSLGYAYVNFFNSIDAERA 197
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ LN++ + G+P R+M+S RDP+ RKS GNIF+KNLDK +D+ L DTFS FGNILSC
Sbjct: 198 LDTLNYSQIMGRPCRIMWSLRDPTKRKSNVGNIFVKNLDKQVDNAMLFDTFSKFGNILSC 257
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
K+ + G SKGYG+V F+ +ES+ +AI+ +NG +L K + V F+ K ER E N+ K
Sbjct: 258 KIEYE-KGVSKGYGYVHFETQESSDRAIQGVNGTMLCGKPITVEQFVSKVERFKEKNEHK 316
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
+++KN+ E T E LQ +G I S ++ D +GKSK GFV F++ +DA R ++
Sbjct: 317 ---LFIKNIDELATVEQLQAELSRFGEIESCIIRLDNNGKSKGLGFVEFKSVEDAQRLMD 373
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ----------------- 304
+ K + + + K ER +E + +Q +
Sbjct: 374 NPEPIQILSKPITIDRIKNKMERNIEHRQIKQQQANGNPNNNNNVVNNSTAPTVAATTTT 433
Query: 305 ------------------------GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
L+I N+D+SID E +++ F+ G+I K++++
Sbjct: 434 TTTTVDSNGNPTNSSNNNNSVAPTNLTLFIHNIDESIDKEVIREEFAKHGTILGIKIVQE 493
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
+G +RG GF+++ST EEA+ A+ +MNG ++ SKPL V+ + RK +R +
Sbjct: 494 -NGKNRGFGFLSYSTQEEANIAIEKMNGFILGSKPLSVSFSNRKYKKRMQ 542
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 136/252 (53%), Positives = 189/252 (75%), Gaps = 4/252 (1%)
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK- 201
VA D G SKGYGFV F+ ++SA ++IEK+NGMLLN K+V+VG F+ + +R+ E+ +
Sbjct: 435 VAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQQAK 494
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TNVY+KN+ E+ E++L + F +YGTITS VM DG S+ FGFV FE+ +A +AV
Sbjct: 495 LYTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAV 554
Query: 261 EALNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
L+GKK + K +YV +AQKK+ER+ ELK +FEQ E +++QG NLY+KNLDD+IDD
Sbjct: 555 TELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDD 614
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
E+L++ FS FG+I S KVM D G S+G GFV FS+PEEA++A+ +MNG++V +KPLYV
Sbjct: 615 ERLRREFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVT 673
Query: 380 LAQRKEDRRARL 391
LAQRK+DR+A L
Sbjct: 674 LAQRKKDRKAHL 685
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 145/253 (57%), Gaps = 20/253 (7%)
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNI 114
T S GYG+V+F Q A +++E +N LNGK + V + R+ ++ G N+
Sbjct: 440 TGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQQAKLYTNV 499
Query: 115 FIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+IKN+D+ ++ K L + F +G I SCKV +G S+G+GFV F++ + A+KA+ +L+G
Sbjct: 500 YIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHG 559
Query: 175 MLLND-KQVYVGHFLRKQERDTE------------INKSKFTNVYVKNLSESTTEEDLQK 221
+ K YV +K ER E IN+ + N+YVKNL ++ +E L++
Sbjct: 560 KKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDDERLRR 619
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
F +GTI SA VM D DG+SK FGFV F + ++A +AV +NG+ K YV AQ+K
Sbjct: 620 EFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRK 678
Query: 282 SERELELKHQFEQ 294
+R+ L Q+ Q
Sbjct: 679 KDRKAHLDSQYSQ 691
>gi|111226286|ref|XP_001134510.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|122096694|sp|Q1ZXC2.1|PAP1B_DICDI RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein, cytoplasmic 1-B
gi|90970453|gb|EAS66827.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 814
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 233/381 (61%), Gaps = 38/381 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TSLYVGDL A+V + L +LF+++G+ + S+ VCRD +T RSLGY YVNF N +A RA
Sbjct: 184 TSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERA 243
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ LN+T ++GKP R+M+S+RDP+ RK+ GNIF+KNL+K +D+ L+DTFS+FGNILSC
Sbjct: 244 LDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSC 303
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KV + G SKGYG+V F+ +SA+KAIEK+NG L+ K + V F+ K ER NK
Sbjct: 304 KVEFE-KGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKVERYKVENK-- 360
Query: 202 FTNVYVKNLSESTTEEDLQKSFG-EYGTITSAVVMRDGDGKSKCFGFVNFENSDDA---- 256
V+ +N ES T E LQ+ +G I S ++ D +GKSK G V F+N +DA
Sbjct: 361 ---VFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKIL 417
Query: 257 ----ARAVEALNGK----------KFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
A + ++G + + K + + + K ER F + K+ D
Sbjct: 418 TESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVER-------FTEYRKKTTD- 469
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
+L+I N+D+SID + +K+ F+ G+I K+++D + ++G GF++FS +EA +A
Sbjct: 470 ---LSLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKA 526
Query: 363 LLEMNGKMVVSKPLYVALAQR 383
L +NG SK + V+ + +
Sbjct: 527 LDSLNGFTFGSKQIQVSFSNK 547
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDPSGI-SRGSGFVAFSTPEEAS 360
Q +LY+ +L +++ L +LFS G +I S V RD + + S G +V F +A
Sbjct: 182 QLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAE 241
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRR 388
RAL +N +V KP + + R +R
Sbjct: 242 RALDTLNYTLVHGKPCRIMWSYRDPTKR 269
>gi|328876647|gb|EGG25010.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 748
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 151/392 (38%), Positives = 228/392 (58%), Gaps = 36/392 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TSLYVGDL V + L +LF+++G+ V S+ VCRD +T RSLGY YVNF N+ +A RA
Sbjct: 130 TSLYVGDLSQEVNELILAELFSKVGRTAVASIHVCRDSATLRSLGYAYVNFYNSVDAERA 189
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ LN++ + G+P R+M+SHRDP+ RKS GNIF+KNL+K +D+ L DTFS +GNILSC
Sbjct: 190 LDTLNYSLILGRPCRIMWSHRDPTKRKSNVGNIFVKNLEKNVDNALLFDTFSTYGNILSC 249
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
K+ + G SKGYG+V F+N+ES+++AI K+NG +L K + V F+ K ER E K
Sbjct: 250 KIEYE-KGISKGYGYVHFENQESSEQAILKVNGTILLGKPIIVEPFVSKVERFKE--KKN 306
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
+++KN+ E+ T E LQ+ +G I S + D GK K FV F+ S+DA +E
Sbjct: 307 ENKLFIKNIDENVTSEMLQQELSRFGEIESCNIRTDPTGKPKGLAFVEFKTSEDAQALLE 366
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQ-------------------------FEQNM 296
+ K+ + + K ER +E + +QN
Sbjct: 367 STEAITILSKQITFDRIKNKVERSIEKNQKLINELNNNNNNHNNNNINHHINSSSLQQNG 426
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
+ + Q L+I N+D +D E +++ F+ G+I K+ SRG F+ +ST
Sbjct: 427 STSQQQQQNLTLFINNIDMEVDKEIIREEFAKHGNILGIKIK------SRGFAFLTYSTQ 480
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
EEA+ A+ +MNG + +K L V+L+ ++++R
Sbjct: 481 EEAAVAIEKMNGYVFGTKALVVSLSNSRKEKR 512
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 142/325 (43%), Gaps = 61/325 (18%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +LE NV ++ L+D F+ G ++S ++ + S GYGYV+F N + + +A+ +
Sbjct: 222 IFVKNLEKNVDNALLFDTFSTYGNILSCKI--EYEKGISKGYGYVHFENQESSEQAILKV 279
Query: 86 NFTPLNGKPIRV--MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
N T L GKPI V S + K +FIKN+D+ + + L S FG I SC +
Sbjct: 280 NGTILLGKPIIVEPFVSKVERFKEKKNENKLFIKNIDENVTSEMLQQELSRFGEIESCNI 339
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
TD G+ KG FV+F E AQ +E + + KQ+ K ER E N+ K
Sbjct: 340 RTDPTGKPKGLAFVEFKTSEDAQALLESTEAITILSKQITFDRIKNKVERSIEKNQ-KLI 398
Query: 204 N--------------------------------------VYVKNLSESTTEEDLQKSFGE 225
N +++ N+ +E +++ F +
Sbjct: 399 NELNNNNNNHNNNNINHHINSSSLQQNGSTSQQQQQNLTLFINNIDMEVDKEIIREEFAK 458
Query: 226 YGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
+G I + KS+ F F+ + ++AA A+E +NG F K V + + E+
Sbjct: 459 HGNILGIKI------KSRGFAFLTYSTQEEAAVAIEKMNGYVFGTKALVVSLSNSRKEKR 512
Query: 286 LELKHQFEQNMKEAADKFQGANLYI 310
+ +D QG N Y+
Sbjct: 513 I------------PSDSLQGPNPYM 525
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 20/190 (10%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYG--TITSAVVMRDGDG-KSKCFGFVNFENSDDAA 257
+FT++YV +LS+ E L + F + G + S V RD +S + +VNF NS DA
Sbjct: 128 QFTSLYVGDLSQEVNELILAELFSKVGRTAVASIHVCRDSATLRSLGYAYVNFYNSVDAE 187
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RA++ LN + + + + + K N+++KNL+ ++
Sbjct: 188 RALDTLNYSLILGRPCRIMWSHRDPTKR----------------KSNVGNIFVKNLEKNV 231
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D+ L FS +G+I SCK+ + GIS+G G+V F E + +A+L++NG +++ KP+
Sbjct: 232 DNALLFDTFSTYGNILSCKIEYE-KGISKGYGYVHFENQESSEQAILKVNGTILLGKPII 290
Query: 378 VALAQRKEDR 387
V K +R
Sbjct: 291 VEPFVSKVER 300
>gi|384495100|gb|EIE85591.1| hypothetical protein RO3G_10301 [Rhizopus delemar RA 99-880]
Length = 359
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 215/366 (58%), Gaps = 54/366 (14%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+L ++ ++ L + F G V SV+VCRD T +SLGY ++NF Q+ + A E
Sbjct: 39 TSLYVGELAPHIDEAMLKEHF---GNVKSVQVCRDSVTNQSLGYAHINFYTPQDCSAAFE 95
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + ++G R+M S R+ + R SGAGNI +KNL +D+K+L+DTFS +GN++SC+V
Sbjct: 96 NLNHSKIDGTTYRLMISERETTKRVSGAGNIILKNLHPNVDNKSLYDTFSRWGNVISCRV 155
Query: 144 ATDLNGQS-KGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS-- 200
L G S KGYGFV +D +A++AI +NG +L K+V+ H + K E+++ ++ +
Sbjct: 156 FNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHASHQVLKNEKESLLSHNDQ 215
Query: 201 ---KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+FTNVYVKNLS TE+DL + F G ++S +V RD K K FGFVNFE +DA
Sbjct: 216 QHCRFTNVYVKNLSSDVTEDDLGELFSTIGPVSSVLVQRDDQHKPKGFGFVNFELPEDAE 275
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RAV L+ K F + +
Sbjct: 276 RAVNELHDKDF--------------------------------------------FAEDV 291
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
DE L F P+G+ITS K+M+D S G +G GFV FS+ +EA+RA+ EMNG+ + SKP+
Sbjct: 292 TDEILINNFLPYGTITSAKIMKDESTGAPKGFGFVCFSSSDEANRAVAEMNGRFISSKPI 351
Query: 377 YVALAQ 382
YVALAQ
Sbjct: 352 YVALAQ 357
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 126/270 (46%), Gaps = 46/270 (17%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++ + +L NV + LYD F++ G V+S RV L+ GYG+VN+ A RA
Sbjct: 122 GAGNIILKNLHPNVDNKSLYDTFSRWGNVISCRVFNKLTGGSVKGYGFVNYDTYAAAERA 181
Query: 82 LEMLNFTPLNGKPIRV-----------MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
+ +N L GK + + SH D + N+++KNL + L +
Sbjct: 182 ISFVNGKMLFGKEVHASHQVLKNEKESLLSHNDQ--QHCRFTNVYVKNLSSDVTEDDLGE 239
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
FS G + S V D + KG+GFV F+ E A++A+ +L+ DK +
Sbjct: 240 LFSTIGPVSSVLVQRDDQHKPKGFGFVNFELPEDAERAVNELH-----DKDFF------- 287
Query: 191 QERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVN 249
+E T+E L +F YGTITSA +M+D G K FGFV
Sbjct: 288 --------------------AEDVTDEILINNFLPYGTITSAKIMKDESTGAPKGFGFVC 327
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
F +SD+A RAV +NG+ K YV AQ
Sbjct: 328 FSSSDEANRAVAEMNGRFISSKPIYVALAQ 357
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
T++YV L+ E L++ FG + S V RD +S + +NF D + A E
Sbjct: 39 TSLYVGELAPHIDEAMLKEHFG---NVKSVQVCRDSVTNQSLGYAHINFYTPQDCSAAFE 95
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA-NLYIKNLDDSIDDE 320
LN K D + + SERE + GA N+ +KNL ++D++
Sbjct: 96 NLNHSKIDGTTYRL----MISERE-------------TTKRVSGAGNIILKNLHPNVDNK 138
Query: 321 KLKQLFSPFGSITSCKVMRDPSGIS-RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
L FS +G++ SC+V +G S +G GFV + T A RA+ +NGKM+ K ++ +
Sbjct: 139 SLYDTFSRWGNVISCRVFNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHAS 198
Query: 380 LAQRKEDRRARL 391
K ++ + L
Sbjct: 199 HQVLKNEKESLL 210
>gi|62751624|ref|NP_001015753.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
gi|58476781|gb|AAH89689.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
Length = 217
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/212 (58%), Positives = 164/212 (77%), Gaps = 3/212 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL +VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAEL 183
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYG 227
+FTNVY+KN E +E L+++F +YG
Sbjct: 184 GAKAKEFTNVYIKNFGEDMDDERLKETFSKYG 215
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 121/220 (55%), Gaps = 16/220 (7%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAEL-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG 330
A + N+YIKN + +DDE+LK+ FS +G
Sbjct: 184 --------GAKAKEFTNVYIKNFGEDMDDERLKETFSKYG 215
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 100/198 (50%), Gaps = 18/198 (9%)
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENS 253
T + ++YV +L TE L + F G + S V RD +S + +VNF+
Sbjct: 3 TAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
DA RA++ +N K + S+R+ L+ K N++IKNL
Sbjct: 63 ADAERALDTMNFDVIKGKPIRI----MWSQRDPSLR------------KSGVGNVFIKNL 106
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
D SID++ L FS FG+I SCKV+ D +G S+G FV F T + A RA+ +MNG ++
Sbjct: 107 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLND 165
Query: 374 KPLYVALAQRKEDRRARL 391
+ ++V + + +R A L
Sbjct: 166 RKVFVGRFKCRREREAEL 183
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M AA + A+LY+ +L + + L + FSP G + S +V RD + S G +V F
Sbjct: 1 MHTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|294939182|ref|XP_002782349.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
gi|239893941|gb|EER14144.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
Length = 266
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 119/218 (54%), Positives = 166/218 (76%), Gaps = 3/218 (1%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GG QF SLY GDL +V ++ LY++FN +G V S+RVCRD TR+SLGY Y+NF
Sbjct: 40 GGVPTQQFA--SLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFH 97
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N +A RAL+ LN++P+NG+P R+M+SHRDP+LR+SGAGN+++KNLD+ ID+KAL+DTFS
Sbjct: 98 NVADAERALDTLNYSPINGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFS 157
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FGNILSCKVA +G+S+G+GFV F+++ESA+ AI KLNGM + +K VYV F + +R
Sbjct: 158 LFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADR 217
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
++ + FTNVY+K++ S TEE +++ FG +G ITS
Sbjct: 218 -SDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITS 254
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 18/223 (8%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
+++ +L ++ L++ F+ G + S +V D + +S GY ++ F N A++A++
Sbjct: 49 SLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 108
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN +N + L RD + +S NVYVKNL + + L +F +G I S
Sbjct: 109 LNYSPINGRPCR----LMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILS 164
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V DGKS+ FGFV+FE+ + A A+ LNG + +K YV + +K ++R
Sbjct: 165 CKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADRSDGSPKN 224
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITS 334
F N+YIK++ S +EK+++ F FG ITS
Sbjct: 225 F-------------TNVYIKHIPPSWTEEKIREEFGAFGEITS 254
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDD 255
+ +F ++Y +L+ E L + F G + S V RD KS + ++NF N D
Sbjct: 42 VPTQQFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVAD 101
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA-NLYIKNLD 314
A RA++ LN + + L H ++ A + GA N+Y+KNLD
Sbjct: 102 AERALDTLNYSPINGRPC-----------RLMWSH------RDPALRRSGAGNVYVKNLD 144
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
+ID++ L FS FG+I SCKV P G SRG GFV F + E A A+ ++NG + K
Sbjct: 145 RNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEK 204
Query: 375 PLYVALAQRKEDR 387
+YVA ++ DR
Sbjct: 205 TVYVAQFKKTADR 217
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++YV +L+ N+ + LYD F+ G ++S +V +S G+G+V+F + + A A
Sbjct: 134 GAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVAL-TPDGKSRGFGFVHFESDESAEAA 192
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGN 137
+ LN + K + V + + R G+ N++IK++ + + + + F AFG
Sbjct: 193 IAKLNGMQIGEKTVYVA-QFKKTADRSDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGE 251
Query: 138 ILSCKVAT 145
I S + T
Sbjct: 252 ITSFAMQT 259
>gi|449016981|dbj|BAM80383.1| polyadenylate-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 999
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 221/380 (58%), Gaps = 39/380 (10%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ +V + L++LF+ +G VVSVRVCRD+ TRRSLGY YVNF N ++A RA+++
Sbjct: 177 SLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYVNFQNPEDAERAIDV 236
Query: 85 LNF--TPLN-GKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L F PL KPIR+M+ DPS R++ GNIFIKNLDK+ID+KAL+DTFS FG +LSC
Sbjct: 237 LQFYEGPLTKNKPIRIMWKRSDPSQRRNPEGNIFIKNLDKSIDNKALYDTFSTFGKVLSC 296
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD-TEINKS 200
K+ATD G S GY FV + + A+ I K+NGMLLN ++VYVG F ++ER+ T +
Sbjct: 297 KLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVYVGEFRPRREREATGELST 356
Query: 201 KFTNVYVKNLSES-TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
KFTNVYVKNL ES T E++ K F YG ITS F+ E +
Sbjct: 357 KFTNVYVKNLDESLCTTEEVTKLFAPYGNITSI--------------FIPTETVQEQQPH 402
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
E + ++ G+ Q S +E++ AD+ A +L+ S +
Sbjct: 403 HEDEHRAPSEEASSEAGR-QGGSSQEVK---------SAGADQSNAA----PDLETSERN 448
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ K +P + V+R RG FV F TPE+A+ A+ +NG + K LYV
Sbjct: 449 DGAK---APENRAHAQSVVRV---RPRGFAFVNFETPEQAAAAVEALNGMELNGKTLYVG 502
Query: 380 LAQRKEDRRARLQVCLLQCR 399
AQ+K +R A L+ + Q R
Sbjct: 503 RAQKKAEREAMLRAQMEQLR 522
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 131/386 (33%), Positives = 205/386 (53%), Gaps = 53/386 (13%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+++ +L+ ++ + LYD F+ G+V+S ++ D SLGY +V++ +A A + +
Sbjct: 269 IFIKNLDKSIDNKALYDTFSTFGKVLSCKLATD-DKGNSLGYAFVHYQDANVAKYVISKM 327
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAG-------NIFIKNLDKAI-DHKALHDTFSAFGN 137
N LNG+ +V P + G N+++KNLD+++ + + F+ +GN
Sbjct: 328 NGMLLNGQ--KVYVGEFRPRREREATGELSTKFTNVYVKNLDESLCTTEEVTKLFAPYGN 385
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
I S + T+ VQ E+ E H +E +E
Sbjct: 386 ITSIFIPTET---------VQ---EQQPHHEDE---------------HRAPSEEASSEA 418
Query: 198 NKSKFTNVYVKNLS--ESTTEEDLQKSFGEYGT--------ITSAVVMRDGDGKSKCFGF 247
+ ++ VK+ +S DL+ S G S V +R + F F
Sbjct: 419 GRQGGSSQEVKSAGADQSNAAPDLETSERNDGAKAPENRAHAQSVVRVRP-----RGFAF 473
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VNFE + AA AVEALNG + + K YVG+AQKK+ERE L+ Q EQ + K Q N
Sbjct: 474 VNFETPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRMQKLQDVN 533
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
L++KNL D +D+ +L++ FS FG+ITS ++MRD G+S+G GFVAFS P+EA +A+ EMN
Sbjct: 534 LFVKNLSDDVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAIKAVTEMN 593
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQV 393
++V KP+YVALAQRK+ RRA+++
Sbjct: 594 QRIVGQKPIYVALAQRKDQRRAQIEA 619
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 12/160 (7%)
Query: 150 QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT------------EI 197
+ +G+ FV F+ E A A+E LNGM LN K +YVG +K ER+ +
Sbjct: 467 RPRGFAFVNFETPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRM 526
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
K + N++VKNLS+ E L++ F +GTITS +MRD G SK FGFV F + D+A
Sbjct: 527 QKLQDVNLFVKNLSDDVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAI 586
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
+AV +N + K YV AQ+K +R +++ Q M+
Sbjct: 587 KAVTEMNQRIVGQKPIYVALAQRKDQRRAQIEAQRAAMMR 626
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 128/244 (52%), Gaps = 29/244 (11%)
Query: 104 PSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFV 157
P+ SG G ++++ +L + + L + FS+ G ++S +V D+ +S GY +V
Sbjct: 163 PAASASGTGELPNVSLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYV 222
Query: 158 QFDNEESAQKAIEKLN---GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
F N E A++AI+ L G L +K + + + D ++ N+++KNL +S
Sbjct: 223 NFQNPEDAERAIDVLQFYEGPLTKNKPIRI----MWKRSDPSQRRNPEGNIFIKNLDKSI 278
Query: 215 TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274
+ L +F +G + S + D G S + FV++++++ A + +NG + ++ Y
Sbjct: 279 DNKALYDTFSTFGKVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVY 338
Query: 275 VGKAQKKSEREL--ELKHQFEQNMKEAADKFQGANLYIKNLDDSI-DDEKLKQLFSPFGS 331
VG+ + + ERE EL +F N+Y+KNLD+S+ E++ +LF+P+G+
Sbjct: 339 VGEFRPRREREATGELSTKF-------------TNVYVKNLDESLCTTEEVTKLFAPYGN 385
Query: 332 ITSC 335
ITS
Sbjct: 386 ITSI 389
>gi|440913528|gb|ELR62976.1| Polyadenylate-binding protein 4, partial [Bos grunniens mutus]
Length = 196
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/196 (61%), Positives = 152/196 (77%), Gaps = 3/196 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLD +ID KAL+DTFSAFGNILSCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNILSCKV 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSK 201
D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ +
Sbjct: 122 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 180
Query: 202 FTNVYVKNLSESTTEE 217
FTNVY+KN E +E
Sbjct: 181 FTNVYIKNFGEEVDDE 196
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 113/210 (53%), Gaps = 16/210 (7%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL S ++ L +F +G I
Sbjct: 62 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 118 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL-- 174
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
A + N+YIKN + +DDE
Sbjct: 175 --------GAKAKEFTNVYIKNFGEEVDDE 196
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 18/190 (9%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G + S V RD +S + +VNF+ DA RA++
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+N K + +Q R+ L+ K N++IKNLD+SIDD+
Sbjct: 62 TMNFDVIKGKPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDNSIDDKA 105
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L FS FG+I SCKV+ D +G S+G FV F T E A +A+ +MNG ++ + ++V
Sbjct: 106 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 164
Query: 382 QRKEDRRARL 391
+ +++R A L
Sbjct: 165 KSRKEREAEL 174
>gi|318087158|gb|ADV40171.1| putative polyA binding protein cytoplasmic 1 isoform 1 [Latrodectus
hesperus]
Length = 217
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 116/208 (55%), Positives = 156/208 (75%), Gaps = 2/208 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
N + SLYVGDL +VT++ L++ F+ G V+S+RVCRDL RRSLGY YVNF
Sbjct: 5 PNGPNYPVASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQP 64
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++DTFSAF
Sbjct: 65 VDAERALDTMNFDMVKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAF 124
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVATD SKGYGFV F+ EE+A AI+K+NGMLLN ++V+VG F+ + ER+
Sbjct: 125 GNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREK 184
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQK 221
++ + +F NVY+KN + +E L++
Sbjct: 185 QLGQKARRFMNVYIKNFGDDLDDEKLRE 212
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 15/225 (6%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDN 161
+P+ ++++ +L + L + FS+ G +LS +V DL + S GY +V F
Sbjct: 4 NPNGPNYPVASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQ 63
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + + + +RD + KS NV++KNL +S + +
Sbjct: 64 PVDAERALDTMNFDMVKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYD 119
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V D + SK +GFV+FE + A A++ +NG + ++ +VGK +
Sbjct: 120 TFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPR 179
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLF 326
SERE +L + + M N+YIKN D +DDEKL+++
Sbjct: 180 SEREKQLGQKARRFM----------NVYIKNFGDDLDDEKLREML 214
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G + S V RD + S + +VNF+ DA RA++
Sbjct: 13 ASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALD 72
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+N + + S+R+ L+ K N++IKNLD SID++
Sbjct: 73 TMNFDMVKGRPIRI----MWSQRDPSLR------------KSGVGNVFIKNLDKSIDNKA 116
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
+ FS FG+I SCKV D S+G GFV F T E A+ A+ ++NG ++ + ++V
Sbjct: 117 MYDTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKF 176
Query: 382 QRKEDRRARL 391
+ +R +L
Sbjct: 177 VPRSEREKQL 186
>gi|326430672|gb|EGD76242.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 765
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 161/458 (35%), Positives = 236/458 (51%), Gaps = 84/458 (18%)
Query: 14 GGANAN-QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
G AN Q SLYVGDL V +++L++LF+ +G V+SVRVCRD TR SLGYGYVNF
Sbjct: 68 GPVPANPQGAAASLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNF 127
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
+ A++A A+ LNF L+G+ IR+M RDP R+SG GNIFI L L DTF
Sbjct: 128 NKAEDAEAAMGQLNFHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTSVHLRDTF 187
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHF-LRK 190
FG ILSCK D +G+ +G+GFV F++ + A++AI + NG D+++ V F RK
Sbjct: 188 EQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRK 247
Query: 191 Q-ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV----MRDGDGKSKCF 245
Q E++ E FTNVYVK+L EE+L K F YG ITS + ++D + + +
Sbjct: 248 QREQEQEERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTE---RPY 304
Query: 246 GFVNFENSDDAARAVEA----------LNGKKFDDK---EWYVGKAQKKSERELELKH-- 290
GFVNF +++ A + VE ++G F++ E +V ++ + E+E H
Sbjct: 305 GFVNFADTEAAQKCVEEGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQ 364
Query: 291 -------------------------QFEQNMKEAADKFQGANLY---------------- 309
+ M+ A D A LY
Sbjct: 365 VADGKLSGFILFKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQKKQERIRRLRR 424
Query: 310 -----------------IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
+KN ++++ +E L++ F G + S KVMRD G+SR GFV
Sbjct: 425 RLQERRRELRQRGGNLFVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVT 484
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
F+T EEA A+ + N + + +P+YVA +++R+AR
Sbjct: 485 FATREEAESAIAKKNRQPLQDRPIYVAFHLTRQERQAR 522
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 112/182 (61%), Positives = 146/182 (80%), Gaps = 1/182 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI 197
E+
Sbjct: 182 EL 183
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 104/187 (55%), Gaps = 6/187 (3%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELEL 288
ERE EL
Sbjct: 177 KEREAEL 183
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 100/190 (52%), Gaps = 18/190 (9%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G I S V RD +S + +VNF+ DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+N K + S+R+ L+ K N++IKNLD SID++
Sbjct: 71 TMNFDVIKGKPVRI----MWSQRDPSLR------------KSGVGNIFIKNLDKSIDNKA 114
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 382 QRKEDRRARL 391
+ +++R A L
Sbjct: 174 KSRKEREAEL 183
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 112/182 (61%), Positives = 146/182 (80%), Gaps = 1/182 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 8 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 67
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 68 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 127
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 128 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 186
Query: 196 EI 197
E+
Sbjct: 187 EL 188
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 104/187 (55%), Gaps = 6/187 (3%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 7 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 66
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 67 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 122
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 123 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181
Query: 282 SERELEL 288
ERE EL
Sbjct: 182 KEREAEL 188
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 100/190 (52%), Gaps = 18/190 (9%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G I S V RD +S + +VNF+ DA RA++
Sbjct: 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 75
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+N K + S+R+ L+ K N++IKNLD SID++
Sbjct: 76 TMNFDVIKGKPVRI----MWSQRDPSLR------------KSGVGNIFIKNLDKSIDNKA 119
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 120 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178
Query: 382 QRKEDRRARL 391
+ +++R A L
Sbjct: 179 KSRKEREAEL 188
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFV 351
+M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 5 SMNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYV 62
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 63 NFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 99
>gi|444720785|gb|ELW61557.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 232
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/229 (52%), Positives = 163/229 (71%), Gaps = 3/229 (1%)
Query: 59 LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
+ T SLGY YV+F + RAL+ +NF + GKP+R+M+S DPSL KS NIFIKN
Sbjct: 1 MITCHSLGYTYVDFQKPTDMERALDTMNFDVIKGKPVRIMWSQHDPSLHKSEVSNIFIKN 60
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
L K+ID+KAL+DTF AFGNILSCKV D NG SKGYGFV F+ +E+ ++AIEK++GMLLN
Sbjct: 61 LGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKMSGMLLN 119
Query: 179 DKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
D +V+VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++G VM
Sbjct: 120 DFKVFVGQFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALRVKVMT 179
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
D GKSK FGFV+FE +DA +AV +NGK+ + K+ Y+G+AQKK E++
Sbjct: 180 DESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQ 228
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 135/240 (56%), Gaps = 15/240 (6%)
Query: 150 QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKN 209
S GY +V F ++A++ +N ++ K V + + D ++KS+ +N+++KN
Sbjct: 5 HSLGYTYVDFQKPTDMERALDTMNFDVIKGKPVRI----MWSQHDPSLHKSEVSNIFIKN 60
Query: 210 LSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD 269
L +S + L +F +G I S V+ D +G SK +GFV+FE + RA+E ++G +
Sbjct: 61 LGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKMSGMLLN 119
Query: 270 DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPF 329
D + +VG+ + + ERE EL A + N+YIKN + +DDE LK LF F
Sbjct: 120 DFKVFVGQFKSRKEREAEL----------GARAKEFTNVYIKNFGEDMDDEHLKDLFGKF 169
Query: 330 GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
G KVM D SG S+G GFV+F E+A +A+ EMNGK + K +Y+ AQ+K +++
Sbjct: 170 GPALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQT 229
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 101/179 (56%), Gaps = 8/179 (4%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+++++ +L ++ + LYD F G ++S +V D + S GYG+V+F + RA+
Sbjct: 53 VSNIFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG--SKGYGFVHFETQEAVERAI 110
Query: 83 EMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFG 136
E ++ LN + V + R + GA N++IKN + +D + L D F FG
Sbjct: 111 EKMSGMLLNDFKVFVGQFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFG 170
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
L KV TD +G+SKG+GFV F+ E AQKA+ ++NG LN KQ+Y+G +K E+ T
Sbjct: 171 PALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQT 229
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 17/147 (11%)
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
+ +V+F+ D RA++ +N FD + K R + +H + K +
Sbjct: 9 YTYVDFQKPTDMERALDTMN---FD-------VIKGKPVRIMWSQHD------PSLHKSE 52
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
+N++IKNL SID++ L F FG+I SCKV+ D +G S+G GFV F T E RA+
Sbjct: 53 VSNIFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIE 111
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARL 391
+M+G ++ ++V + +++R A L
Sbjct: 112 KMSGMLLNDFKVFVGQFKSRKEREAEL 138
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 119/213 (55%), Positives = 159/213 (74%), Gaps = 3/213 (1%)
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ +N + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSC
Sbjct: 1 LDTMNSDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 60
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NK 199
KV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 61 KVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 119
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+FTNVY+KN E +E L++ F ++G S VM D G+SK FGFV+FE +DA +A
Sbjct: 120 KEFTNVYIKNFGEDMDDERLKEIFNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKA 179
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V+ +NGK+ + ++ YVG K ER+ ELK +F
Sbjct: 180 VDEMNGKEINGRQVYVGPCPXKVERQTELKRKF 212
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 121/201 (60%), Gaps = 11/201 (5%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE
Sbjct: 20 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 78
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A RA+E +NG +D++ +VG+ + + ERE EL A + N+YIK
Sbjct: 79 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL----------GAKAKEFTNVYIK 128
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N + +DDE+LK++F+ FG+ S KVM D SG S+G GFV+F E+A +A+ EMNGK +
Sbjct: 129 NFGEDMDDERLKEIFNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEI 188
Query: 372 VSKPLYVALAQRKEDRRARLQ 392
+ +YV K +R+ L+
Sbjct: 189 NGRQVYVGPCPXKVERQTELK 209
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 112/187 (59%), Gaps = 9/187 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 29 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 86
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F+ F
Sbjct: 87 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEDMDDERLKEIFNKF 146
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG +N +QVYVG K ER T
Sbjct: 147 GAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEINGRQVYVGPCPXKVERQT 206
Query: 196 EINKSKF 202
E+ K KF
Sbjct: 207 EL-KRKF 212
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L ++FN+ G +SV+V D S R S G+G+V+F
Sbjct: 116 GAKAKEF--TNVYIKNFGEDMDDERLKEIFNKFGAFLSVKVMTDDSGR-SKGFGFVSFEK 172
Query: 75 AQEAARALEMLNFTPLNGKPIRV 97
++A +A++ +N +NG+ + V
Sbjct: 173 HEDAQKAVDEMNGKEINGRQVYV 195
>gi|326430719|gb|EGD76289.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 642
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 158/448 (35%), Positives = 229/448 (51%), Gaps = 84/448 (18%)
Query: 14 GGANAN-QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
G AN Q SLYVGDL V +++L++LF+ +G V+SVRVCRD TR SLGYGYVNF
Sbjct: 59 GPVPANPQGAAASLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNF 118
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
+ A++A A+ LNF L+G+ IR+M RDP R+SG GNIFI L L DTF
Sbjct: 119 NKAEDAEAAMGQLNFHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTSVHLRDTF 178
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHF-LRK 190
FG ILSCK D +G+ +G+GFV F++ + A++AI + NG D+++ V F RK
Sbjct: 179 EQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRK 238
Query: 191 Q-ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV----MRDGDGKSKCF 245
Q E++ E FTNVYVK+L EE+L K F YG ITS + ++D + + +
Sbjct: 239 QREQEQEERTKNFTNVYVKSLRRGADEEELGKLFEPYGDITSKALRTYKLKDTE---RPY 295
Query: 246 GFVNFENSDDAARAVEA----------LNGKKFDDK---EWYVGKAQKKSERELELKH-- 290
GFVNF +++ A + VE ++G F++ E +V ++ + E+E H
Sbjct: 296 GFVNFADTEAAQKCVEEGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQ 355
Query: 291 -------------------------QFEQNMKEAADKFQGANLY---------------- 309
+ M+ A D A LY
Sbjct: 356 VADGKLSGFILFKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQKKQERIRRLRR 415
Query: 310 -----------------IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
+KN ++++ +E L++ F G + S KVMRD G+SR GFV
Sbjct: 416 RLQERRRELRQRGGNLYVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVT 475
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVAL 380
F+T EEA A+ + N + + +P+YVA
Sbjct: 476 FATREEAESAIAKKNRQPLQDRPIYVAF 503
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 126/288 (43%), Positives = 178/288 (61%), Gaps = 32/288 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL +VT++ LY++F+ +G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + G+PIR+M+SHRDP LR+SG GNIFIKNL+ +ID+KAL+DTFS FG+ILS KV
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
+ +G S+G+GFV F+ E+AQKAI +NGMLLND RK D
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLND---------RKVRSD--------- 171
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
Y +L+ S I+S + SK FGFV F + ++A +AV +
Sbjct: 172 --YPWSLA----------SLCPATLISSCFQVMTESSHSKGFGFVCFSSPEEATKAVTEM 219
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNM-KEAADKFQGANLYI 310
NG+ K YV AQ+K ER+ L +Q+ + + + FQ Y+
Sbjct: 220 NGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRSVLSSFQQPTSYL 267
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 144/280 (51%), Gaps = 48/280 (17%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS +V D+ +S GY ++ F A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + RD + +S N+++KNL S + L +F +G+I S
Sbjct: 72 MNFEMIKGQPIRI----MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ V+ + G S+ FGFV+FE + A +A+ +NG +D+ + +S+ L
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDR-------KVRSDYPWSL--- 176
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A+L L I+SC + S S+G GFV
Sbjct: 177 --------------ASLCPATL------------------ISSCFQVMTESSHSKGFGFV 204
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 205 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAIL 244
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 92/179 (51%), Gaps = 18/179 (10%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFEN 252
DT + +++YV +L TE L + F GTI S V RD +S + ++NF+
Sbjct: 2 DTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
DA RA++ +N + + + S R+ L+ + N++IKN
Sbjct: 62 PADAERALDTMNFEMIKGQPIRI----MWSHRDPGLR------------RSGMGNIFIKN 105
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
L++SID++ L FS FGSI S KV+ + G SRG GFV F T E A +A+ MNG ++
Sbjct: 106 LENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLL 163
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 33/192 (17%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V + R G+G+V+F + A +A
Sbjct: 97 GMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKA 154
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ +N LN + +R Y SL + I SC
Sbjct: 155 INTMNGMLLNDRKVRSDYPWSLASLCPATL--------------------------ISSC 188
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+ SKG+GFV F + E A KA+ ++NG ++ K +YV RK+ER K+
Sbjct: 189 FQVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER-----KAI 243
Query: 202 FTNVYVKNLSES 213
TN Y + LS S
Sbjct: 244 LTNQYRRRLSRS 255
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALL 364
++LY+ +L + + L ++FSP G+I S +V RD + S G ++ F P +A RAL
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
MN +M+ +P+ + + R R
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLR 94
>gi|273068254|gb|ACZ97550.1| apoptosis-promoting RNA-binding protein [Ornithodoros moubata]
Length = 204
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/204 (57%), Positives = 154/204 (75%), Gaps = 2/204 (0%)
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF P+ KPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++DTFSAFGNILS
Sbjct: 1 ALDTMNFDPIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILS 60
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
C+VATD SKGYGFV F+ EE+A AI K+NGMLLN K+V+VG F+ ++ER+ +
Sbjct: 61 CRVATDEEANSKGYGFVHFETEEAANNAISKVNGMLLNGKKVFVGRFIPRKERERLLGDK 120
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVY+KN + +E L F +YG +TSA VM D +GK++ FGFV+FE+ + A +
Sbjct: 121 ARRFTNVYIKNFGDELDDEKLVVIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEK 180
Query: 259 AVEALNGKKFDDKEWYVGKAQKKS 282
AVE LNGK K YVG+AQKK+
Sbjct: 181 AVEELNGKDVGGKPLYVGRAQKKA 204
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 113/193 (58%), Gaps = 10/193 (5%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS NV++KNL +S + + +F +G I S V D + SK +GFV+FE
Sbjct: 21 QRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFE 80
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A A+ +NG + K+ +VG+ + ERE L + A +F N+YIK
Sbjct: 81 TEEAANNAISKVNGMLLNGKKVFVGRFIPRKERERLLGDK--------ARRF--TNVYIK 130
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N D +DDEKL +F +G +TS KVM D +G +RG GFV+F PE A +A+ E+NGK V
Sbjct: 131 NFGDELDDEKLVVIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDV 190
Query: 372 VSKPLYVALAQRK 384
KPLYV AQ+K
Sbjct: 191 GGKPLYVGRAQKK 203
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 7/175 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S RV D S GYG+V+F + A A
Sbjct: 30 GVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATD-EEANSKGYGFVHFETEEAANNA 88
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LNGK + V + R R G N++IKN +D + L F +
Sbjct: 89 ISKVNGMLLNGKKVFVGRFIPRKERERLLGDKARRFTNVYIKNFGDELDDEKLVVIFDKY 148
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
G + S KV D NG+++G+GFV F++ E A+KA+E+LNG + K +YVG +K
Sbjct: 149 GKVTSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDVGGKPLYVGRAQKK 203
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
N++IKNLD SID++ + FS FG+I SC+V D S+G GFV F T E A+ A+ +
Sbjct: 32 GNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEEAANNAISK 91
Query: 366 MNGKMVVSKPLYVA-LAQRKEDRR 388
+NG ++ K ++V RKE R
Sbjct: 92 VNGMLLNGKKVFVGRFIPRKERER 115
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G A +F T++Y+ + + D +L +F++ G+V S +V D ++ G+G+V+F +
Sbjct: 118 GDKARRF--TNVYIKNFGDELDDEKLVVIFDKYGKVTSAKVMVD-ENGKNRGFGFVSFED 174
Query: 75 AQEAARALEMLNFTPLNGKPIRV 97
+ A +A+E LN + GKP+ V
Sbjct: 175 PECAEKAVEELNGKDVGGKPLYV 197
>gi|147835778|emb|CAN72942.1| hypothetical protein VITISV_011270 [Vitis vinifera]
Length = 185
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/146 (79%), Positives = 124/146 (84%), Gaps = 5/146 (3%)
Query: 2 AQVQAQGQNV-----NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVC 56
AQVQ Q Q + GA NQF TTSLYVGDLE NV D QLYDLFNQMG VVSVRVC
Sbjct: 3 AQVQVQPQGPGPAPNSAAGAGGNQFVTTSLYVGDLELNVNDPQLYDLFNQMGAVVSVRVC 62
Query: 57 RDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFI 116
RDLSTRRSLGYGYVN+SN Q+AARAL++LNFTPLNGKP+R+MYSH DPS+RKSG GNIFI
Sbjct: 63 RDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPLRIMYSHCDPSIRKSGTGNIFI 122
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCK 142
KNLDK IDHKALHDTFSAFGNILSCK
Sbjct: 123 KNLDKGIDHKALHDTFSAFGNILSCK 148
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVE 261
T++YV +L + + L F + G + S V RD +S +G+VN+ N DAARA++
Sbjct: 30 TSLYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 89
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN + K + + + +++++ N++IKNLD ID +
Sbjct: 90 VLNFTPLNGKPLRI------------MYSHCDPSIRKSGT----GNIFIKNLDKGIDHKA 133
Query: 322 LKQLFSPFGSITSCK 336
L FS FG+I SCK
Sbjct: 134 LHDTFSAFGNILSCK 148
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKL 172
+++ +L+ ++ L+D F+ G ++S +V DL+ + S GYG+V + N + A +A++ L
Sbjct: 32 LYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 91
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N LN K + + + D I KS N+++KNL + + L +F +G I S
Sbjct: 92 NFTPLNGKPLRIMY----SHCDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSC 147
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG-ISRGSGFVAFSTPE 357
++F +LY+ +L+ +++D +L LF+ G++ S +V RD S S G G+V +S P+
Sbjct: 23 GGNQFVTTSLYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQ 82
Query: 358 EASRALLEMNGKMVVSKPLYV 378
+A+RAL +N + KPL +
Sbjct: 83 DAARALDVLNFTPLNGKPLRI 103
>gi|154345147|ref|XP_001568515.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065852|emb|CAM43630.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 579
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 146/378 (38%), Positives = 225/378 (59%), Gaps = 18/378 (4%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
S++VG L+ ++ + +LYD F ++G V SVRVC D +T++SLGYGYVNF + +A +AL+
Sbjct: 8 PSIWVGGLDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALD 67
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
T L + +R+ RDPS R+SG NI +K L K +D AL + FS FG + + +
Sbjct: 68 QAG-TKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKTVDTYALKELFSKFGRLTAIGL 126
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
A D G+S+GY + F+ EESA +A+++++GM ++ + + V + + Q RD + +FT
Sbjct: 127 ACDEKGESRGYARISFEREESAVEAVKEMDGMEMDGQAIVVERY-QAQHRDELLK--QFT 183
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEA 262
N+YVKNL + T+E L+ F YG ++SA V G +S+ G+V FE +DAARAVE
Sbjct: 184 NLYVKNLDPAVTDEKLRAFFARYGAVSSAKVRDLGGVQSEVGLGYVAFEKHEDAARAVEE 243
Query: 263 LNGKKFDDKEWYVGKAQKKSE------RELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
LNG KE + KA+ + RE + + Q + A + NLY+K DD+
Sbjct: 244 LNG-----KECEIAKAESTLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDT 298
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGK-MVVSK 374
+ E+L++LF +G S VM D +G+SR GFV+ AS+A+ E+NG + +
Sbjct: 299 VTSERLEELFQRYGETVSVTVMMDKETGMSRCFGFVSMKDQNAASQAIQELNGSTFLCPR 358
Query: 375 PLYVALAQRKEDRRARLQ 392
PL+V A RK+ RR L+
Sbjct: 359 PLFVTYALRKDARRQNLE 376
>gi|71745456|ref|XP_827358.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|4104919|gb|AAD13337.1| poly(A) binding protein I [Trypanosoma brucei]
gi|70831523|gb|EAN77028.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261331563|emb|CBH14557.1| PABP2 [Trypanosoma brucei gambiense DAL972]
Length = 555
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 218/382 (57%), Gaps = 23/382 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
+ S++VG L+ N+ + +LYD F ++G V SVRVC D T++SLGYGYVNF N +A +A
Sbjct: 7 ASPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKA 66
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ L K IR+ RDPS R+SG NI +K L +D AL + FS +G + +
Sbjct: 67 LDQAGVK-LGTKHIRIAKIQRDPSKRRSGVTNIIVKKLPPTVDTYALKEMFSKYGRLTAI 125
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+ATD G+S+GY + ++ EESA A+ +LNG+ ++D + V R Q E +
Sbjct: 126 GLATDEKGESRGYARISYEKEESAVDAVRELNGVSIDDCAITVE---RYQPHHREEQLKQ 182
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAV 260
+TN+YVKNL S +E L++ F +G +TSA V RD G+ FG+V + + AA+AV
Sbjct: 183 YTNLYVKNLDPSVDDEKLKEVFSPFGEVTSAKV-RDLAGRPTVGFGYVAYATHEAAAKAV 241
Query: 261 EALNGKKFDDKEWYVGKAQKK--------SERELELKHQFEQNMKEAADKFQGANLYIKN 312
E L DDKE + K K E + + + ++ K+ NLY+KN
Sbjct: 242 EEL-----DDKESPLAKEGMKLSVCRFRSREERKRERERLRRERQQQHSKY--PNLYVKN 294
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
DD++ E+LK LF PFG S VM D + +SR GFV+F A++A+ E++G
Sbjct: 295 FDDTVTSERLKALFDPFGETVSVSVMMDKATKVSRCFGFVSFKEQSSAAQAIQELHGSTA 354
Query: 372 V-SKPLYVALAQRKEDRRARLQ 392
+ +PL+V+ A RK+ RR L+
Sbjct: 355 LGPRPLFVSYALRKDARRQTLE 376
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 137/336 (40%), Positives = 190/336 (56%), Gaps = 53/336 (15%)
Query: 8 GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 67
GQN G + + SLYVGDL +V +S L++ F+ G V+S+RVCRD +TR SLGY
Sbjct: 21 GQNQTG-----SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGY 75
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAI---- 123
YVNF +A RA++ +NF L+GKP+R+M+S RDP++R+SGAGNIFIKNLDK
Sbjct: 76 AYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKF 135
Query: 124 --------------------------DH---KALHDTFSAFGNILSCKVATDLNGQSKGY 154
DH + L F+ FGNI SC+V T + G+SKG+
Sbjct: 136 QPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT-VEGKSKGF 194
Query: 155 GFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLRKQERDTEINKS------------ 200
GFV F N E A+ A++ L+ + D +++V +K ER E+ K
Sbjct: 195 GFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKY 254
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+ N+YVKNL E+ ++ L+K F YG ITSA VM D +G+SK FGFV FE ++A AV
Sbjct: 255 QGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAV 314
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+N K K YV AQ+K +R +L Q+ Q +
Sbjct: 315 TEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRL 350
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/317 (41%), Positives = 191/317 (60%), Gaps = 33/317 (10%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L ++ L + FSA G +LS +V D S GY +V F A++A++
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 172 LNGMLLNDK---------------------------QVYVGHFLRKQERDTEINKS--KF 202
+N L+ K +V+VG F + +R+ E+ ++ +F
Sbjct: 93 MNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKFQPRAQRNRELGETAKQF 152
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN + +E L+K F ++G ITS VM +GKSK FGFV F N ++A AV+A
Sbjct: 153 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAETAVQA 211
Query: 263 LNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
L+ + D + +V +AQKKSER ELK + EQ+ E K+QG NLY+KNLD+++DD+
Sbjct: 212 LHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDD 271
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
LK+ F +G+ITS KVM D +G S+G GFV F PEEA+ A+ EMN KMV SKPLYVA+
Sbjct: 272 GLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAI 331
Query: 381 AQRKEDRRARLQVCLLQ 397
AQRKEDRRA+L +Q
Sbjct: 332 AQRKEDRRAQLASQYMQ 348
>gi|71659778|ref|XP_821609.1| poly(A)-binding protein [Trypanosoma cruzi strain CL Brener]
gi|459650|gb|AAC46487.1| poly(A) binding protein [Trypanosoma cruzi]
gi|515321|gb|AAC46489.1| poly(A) binding protein [Trypanosoma cruzi]
gi|2854066|gb|AAC02537.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|2854068|gb|AAC02538.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|70886993|gb|EAN99758.1| poly(A)-binding protein, putative [Trypanosoma cruzi]
gi|407408287|gb|EKF31789.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
gi|407847529|gb|EKG03215.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi]
Length = 550
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/379 (37%), Positives = 217/379 (57%), Gaps = 17/379 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
+ S++VG L+ N+ + +LYD F ++G V SVRVC D T++SLGYGYVNF N +A +A
Sbjct: 7 ASPSIWVGGLDPNLNEQKLYDHFVRLGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKA 66
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ L K IR+ RDPS R+SG NI +K L ++D AL + FS +G + +
Sbjct: 67 LDQAGVK-LGSKHIRIAKIQRDPSKRRSGVTNIVVKKLPPSVDTYALKEMFSKYGRLTAI 125
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+AT+ NG+S+GY + ++ EESA +A++++NGM+++D + V R Q E +
Sbjct: 126 GLATNENGESRGYARISYEKEESAIQAVQEVNGMVIDDCAITVE---RYQPHHREEQLKQ 182
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKNL S +E L++ F +G +TSA V G ++ F +V + + AA+AVE
Sbjct: 183 FTNLYVKNLDPSVNDEKLKEVFSAFGEVTSAKVRDLGANQTVGFAYVAYATHEAAAKAVE 242
Query: 262 ALNGKKFDDKEWYVGKAQKK------SERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
L D+KE + K K R+ + + + + NLY+KN DD
Sbjct: 243 EL-----DEKESPLAKEGMKLSVCRFRSRDERQRERERLRRERQQQHSKYPNLYVKNFDD 297
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVV-S 373
++ E+LK+LF G S VM D + +SR GFV+F ASRA+ E++G +
Sbjct: 298 TVTSERLKELFERCGETVSVSVMMDRATRVSRCFGFVSFKEQSAASRAIQELHGSTALGP 357
Query: 374 KPLYVALAQRKEDRRARLQ 392
+PL+V A RK+ RR L+
Sbjct: 358 RPLFVTYALRKDARRQTLE 376
>gi|146101854|ref|XP_001469222.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|398023673|ref|XP_003864998.1| poly(a) binding protein, putative [Leishmania donovani]
gi|134073591|emb|CAM72325.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|322503234|emb|CBZ38319.1| poly(a) binding protein, putative [Leishmania donovani]
Length = 585
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/373 (38%), Positives = 224/373 (60%), Gaps = 8/373 (2%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
S++VG L+ ++ + +LYD F ++G V SVRVC D +T++SLGYGYVNF + +A +AL+
Sbjct: 8 PSIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALD 67
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+ L + +R+ RDPS R+SG NI +K L K++D AL + FS FG + + +
Sbjct: 68 QAG-SKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGL 126
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
A D G+S+GY + F+ EESA A+ +++GM ++ + + V + + Q RD + +FT
Sbjct: 127 ACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERY-QAQHRDELLK--QFT 183
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEA 262
N+YVKNL + T+E L+ F +YG ++SA V G +S+ G+V F+ +DAARAVE
Sbjct: 184 NLYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAVQSEAGLGYVAFQKHEDAARAVEE 243
Query: 263 LNGKKFD-DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK+ + K + RE + + Q + A + NLY+K DD++ E+
Sbjct: 244 LNGKECEISKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSER 303
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVS-KPLYVA 379
L++LF +G S VM D +G+SR GFV+ AS+A+ E+NG +S +PL+V
Sbjct: 304 LEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLFVT 363
Query: 380 LAQRKEDRRARLQ 392
A RK+ RR L+
Sbjct: 364 YALRKDARRQNLE 376
>gi|401429856|ref|XP_003879410.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495660|emb|CBZ30966.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 594
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 145/378 (38%), Positives = 225/378 (59%), Gaps = 18/378 (4%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
S++VG L+ ++ + +LYD F ++G V SVRVC D +T++SLGYGYVNF + +A +AL+
Sbjct: 8 PSIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALD 67
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+ L + +R+ RDPS R+SG NI +K L K++D AL + FS FG + + +
Sbjct: 68 QAG-SKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGL 126
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
A D G+S+GY + F+ EESA A+ +++GM ++ + + V + + Q RD + +FT
Sbjct: 127 ACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERY-QAQHRDELLK--QFT 183
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEA 262
N+YVKNL + T+E L+ F +YG ++SA V G +S+ G+V F+ +DAARAVE
Sbjct: 184 NLYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAVQSEAGLGYVAFQKHEDAARAVEE 243
Query: 263 LNGKKFDDKEWYVGKA------QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
LNG KE + KA + RE + + Q + A + NLY+K DD+
Sbjct: 244 LNG-----KECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDT 298
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVS-K 374
+ E+L++LF +G S VM D +G+SR GFV+ AS+A+ E+NG +S +
Sbjct: 299 VTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPR 358
Query: 375 PLYVALAQRKEDRRARLQ 392
PL+V A RK+ RR L+
Sbjct: 359 PLFVTYALRKDARRQNLE 376
>gi|389595175|ref|XP_003722810.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
gi|323364038|emb|CBZ13044.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
Length = 594
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 144/378 (38%), Positives = 225/378 (59%), Gaps = 18/378 (4%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
S++VG L+ ++ + +LYD F ++G V SVRVC D +T++SLGYGYVNF + +A +AL+
Sbjct: 8 PSIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALD 67
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+ L + +R+ RDPS R+SG NI +K L K++D AL + FS FG + + +
Sbjct: 68 QAG-SKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGL 126
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
A D G+S+GY + F+ EESA A+ +++GM ++ + + V + + Q RD + +FT
Sbjct: 127 ACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERY-QAQHRDELLK--QFT 183
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEA 262
N+YVKNL + T+E L+ F +YG ++SA V G +S+ G+V F+ ++AARAVE
Sbjct: 184 NLYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAAQSEAGLGYVAFQKHENAARAVEE 243
Query: 263 LNGKKFDDKEWYVGKA------QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
LNG KE + KA + RE + + Q + A + NLY+K DD+
Sbjct: 244 LNG-----KECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDT 298
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVS-K 374
+ E+L++LF +G S VM D +G+SR GFV+ AS+A+ E+NG +S +
Sbjct: 299 VTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPR 358
Query: 375 PLYVALAQRKEDRRARLQ 392
PL+V A RK+ RR L+
Sbjct: 359 PLFVTYALRKDARRQNLE 376
>gi|190405722|gb|EDV08989.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 262
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 109/204 (53%), Positives = 156/204 (76%), Gaps = 2/204 (0%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A+E LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVK 208
L ++ERD+++ ++K +TN+YVK
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVK 224
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 22/222 (9%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQ 166
++ + ++++ +L+ ++ L+D FS G++ S +V D + S GY +V F++ E+ +
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY 226
KAIE+LN + + + +RD + K N+++KNL + L +F +
Sbjct: 94 KAIEQLNYTPIKGRLCRI----MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVF 149
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G I S+ + D +GKSK FGFV+FE A A++ALNG + +E YV + ER+
Sbjct: 150 GDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDS 209
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
+L+ K NLY+K +L +L P
Sbjct: 210 QLEET----------KAHYTNLYVKT-------HQLPKLLRP 234
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 17/190 (8%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEA 262
++YV +L S +E L F G+++S V RD K+ + +VNF + + +A+E
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN + + +Q R+ L+ K N++IKNL ID++ L
Sbjct: 99 LNYTPIKGRLCRIMWSQ----RDPSLR------------KKGSGNIFIKNLHPDIDNKAL 142
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I S K+ D +G S+G GFV F A A+ +NG ++ + +YVA
Sbjct: 143 YDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHL 202
Query: 383 RKEDRRARLQ 392
+++R ++L+
Sbjct: 203 SRKERDSQLE 212
>gi|342183555|emb|CCC93035.1| poly(A)-binding protein 1 [Trypanosoma congolense IL3000]
Length = 557
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 213/374 (56%), Gaps = 7/374 (1%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
+ S++VG L+ N+ + +LYD F ++G V SVRVC D T++SLGYGYVNF N +A +A
Sbjct: 7 ASPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKA 66
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ L K IR+ RDPS R+SG NI +K L +D AL + FS FG + +
Sbjct: 67 LDQAGVK-LGTKHIRIAKIQRDPSKRRSGVTNIVVKKLPSTVDTYALKEMFSKFGRLTAI 125
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+ATD G+S+GY + ++ EESA +A+ +LNG+ ++D + V R Q E +
Sbjct: 126 GLATDEKGESRGYARISYEKEESAVEAVRELNGVSIDDCSITVE---RYQPHHREEQLKQ 182
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
+TN+YVKNL S +E L++ F ++G +TSA V G+ S F +V + + AA+AVE
Sbjct: 183 YTNLYVKNLDPSVDDEKLKEVFAKFGEVTSAKVRDLGNNSSVGFAYVAYATHEAAAKAVE 242
Query: 262 ALNGKKFD-DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
L+ K KE + RE + + + + NLY+KN DD++ E
Sbjct: 243 ELDEKSSTLAKEGMKLSVCRFRSREERQRERERVRRERQQQHGKYPNLYVKNFDDTVTSE 302
Query: 321 KLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYV 378
KLK+LF FG S VM D + +SR GFV+F AS+A+ E++G + +PL+V
Sbjct: 303 KLKELFERFGETVSVSVMMDKATQVSRCFGFVSFKEQSAASQAIQELHGSTALGPRPLFV 362
Query: 379 ALAQRKEDRRARLQ 392
A RK+ RR L+
Sbjct: 363 TYALRKDARRQTLE 376
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/237 (49%), Positives = 167/237 (70%), Gaps = 11/237 (4%)
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
+NGMLLNDK+V+VG FL + ER ++ + +FTNVY+KN + E+ LQ F +YG +
Sbjct: 1 VNGMLLNDKKVFVGKFLTRSERIKKMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVV 60
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE-----WYVGKAQKKSER 284
S VMRD DG S+ FGFV +++ ++A AVEA+NG++ + YVG+AQKK ER
Sbjct: 61 KSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKKQER 120
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD---- 340
+ EL+ Q+EQ +E +FQG NLY+KNLDD++ D++L++ F+ +G+ITS K+M D
Sbjct: 121 QQELRGQYEQQKQERIQRFQGVNLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECS 180
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
SRG GFV FS+PEEA++A+ EMNG++V +KPLYVALAQR+EDR+A L +Q
Sbjct: 181 TGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRREDRKAHLTAQYMQ 237
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 115/205 (56%), Gaps = 21/205 (10%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKN D K L F +G + S V D +G S+G+GFV +D+ E AQ A+E +
Sbjct: 35 NVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAM 94
Query: 173 NGMLLNDKQ-----VYVGHFLRKQERDTE------------INKSKFTNVYVKNLSESTT 215
NG + +YVG +KQER E I + + N+YVKNL ++ T
Sbjct: 95 NGQEIEGASGSTDILYVGRAQKKQERQQELRGQYEQQKQERIQRFQGVNLYVKNLDDNVT 154
Query: 216 EEDLQKSFGEYGTITSAVVMRDGD----GKSKCFGFVNFENSDDAARAVEALNGKKFDDK 271
+++L+++F YGTITSA +M DG+ +S+ FGFV F + ++A +AV +NG+ K
Sbjct: 155 DDELREAFATYGTITSAKIMSDGECSTGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTK 214
Query: 272 EWYVGKAQKKSERELELKHQFEQNM 296
YV AQ++ +R+ L Q+ Q M
Sbjct: 215 PLYVALAQRREDRKAHLTAQYMQRM 239
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G QF T++Y+ + + L +F + G V SV V RD S G+G+V + +
Sbjct: 27 GERVRQF--TNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGN-SRGFGFVAYDS 83
Query: 75 AQEAARALEMLNFTPLNG--------------------KPIRVMY-SHRDPSLRKSGAGN 113
+EA A+E +N + G + +R Y + +++ N
Sbjct: 84 HEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKKQERQQELRGQYEQQKQERIQRFQGVN 143
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD----LNGQSKGYGFVQFDNEESAQKAI 169
+++KNLD + L + F+ +G I S K+ +D +S+G+GFV F + E A KA+
Sbjct: 144 LYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECSTGERSRGFGFVCFSSPEEATKAV 203
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSES 213
++NG ++ K +YV R+++R K+ T Y++ ++ S
Sbjct: 204 TEMNGRIVGTKPLYVALAQRREDR-----KAHLTAQYMQRMTSS 242
>gi|52221255|gb|AAU29548.1| poly(A)-binding protein [Crithidia fasciculata]
Length = 564
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 143/378 (37%), Positives = 223/378 (58%), Gaps = 18/378 (4%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
S++VG L+ + + +LYD F ++G V SVRVC D +T++SLGYGYVNF + +A +AL+
Sbjct: 8 PSIWVGGLDPELNEQKLYDYFVRIGPVASVRVCVDSATQKSLGYGYVNFQDPSDAEKALD 67
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
L + +R+ RDPS R+SG NI +K L K++D AL + F +G + + +
Sbjct: 68 QAG-AKLGTRFLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTFALKEMFGKYGRLTAIGL 126
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
A D G+S+GY + F+ EESA A+++++GM ++ + + V + + Q RD + +FT
Sbjct: 127 ACDERGESRGYARISFEREESAVDAVKEMDGMEMDGQAIVVERY-QAQHRDEMLK--QFT 183
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEA 262
N+YVKNL + T+ L+ F +YG ++SA V GD +S+ FG+V FE +DAA+AVE
Sbjct: 184 NLYVKNLEPTVTDSKLRAFFAKYGEVSSAKVRDLGDAQSEVGFGYVAFEKHEDAAKAVEE 243
Query: 263 LNGKKFDDKEWYVGKA------QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
LNG KE + KA + RE + + Q + A + NLY+K DD+
Sbjct: 244 LNG-----KECEIAKAGAPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDT 298
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVS-K 374
+ E+L++LF +G S VM D +G+SR GFV+ AS A+ ++NG +S +
Sbjct: 299 VTSERLEELFQRYGETVSVTVMTDKDTGMSRCFGFVSMKDQGAASHAIQDLNGSTFLSPR 358
Query: 375 PLYVALAQRKEDRRARLQ 392
PL+V A RK+ RR L+
Sbjct: 359 PLFVTYALRKDARRQNLE 376
>gi|340056333|emb|CCC50664.1| poly(A)-binding protein [Trypanosoma vivax Y486]
Length = 548
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 147/382 (38%), Positives = 216/382 (56%), Gaps = 23/382 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
+ S++VG L+ N+ + +LYD F ++G V SVRVC D T++SLGYGYVNF N +A +A
Sbjct: 7 ASPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKA 66
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ L K IR+ RDPS R+SG NI +K L +D AL + FS +G + +
Sbjct: 67 LDQAGVK-LGSKHIRIARIQRDPSKRRSGVTNIVVKKLPPTVDTYALKEMFSKYGRLTAI 125
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+AT+ G+S+GY + ++ EESA +A++ +NGM ++D + V R Q E
Sbjct: 126 GLATNEKGESRGYARISYEKEESAIEAVQGVNGMTIDDCPITVE---RYQPHHREEQLKL 182
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAV 260
+TN+YVKNL S +E L++ F YG +TSA V RD GK S F +V + + A +AV
Sbjct: 183 YTNLYVKNLDPSVGDEKLKEVFSAYGEVTSAKV-RDLGGKMSVGFAYVAYATHEAAVKAV 241
Query: 261 EALNGKKFDDKEWYVGKAQKK--------SERELELKHQFEQNMKEAADKFQGANLYIKN 312
E L DDKE + K K E + + + ++ K+ NLY+KN
Sbjct: 242 EEL-----DDKENPLAKEGMKLSVCRFRSREERQRERERLRRERQQLYSKY--PNLYVKN 294
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
DD++ E+LK+LF FG S VM D + +SR GFV+F ASRA+ E++G
Sbjct: 295 FDDTVTSERLKELFERFGETVSVSVMVDKATKVSRCFGFVSFKEQNSASRAIQELHGSTA 354
Query: 372 V-SKPLYVALAQRKEDRRARLQ 392
+ +PL+V A RK+ RR L+
Sbjct: 355 LGPRPLFVTYALRKDARRQTLE 376
>gi|392355792|ref|XP_228576.4| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 456
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/185 (58%), Positives = 138/185 (74%), Gaps = 2/185 (1%)
Query: 13 GGGANANQ-FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
GG + N F T SLYVGDL VT+S LY+ F+ G ++S+R+CRD TRRSLGY YVN
Sbjct: 246 GGSDDGNPDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVN 305
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ +A RALE +NF +NG+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++
Sbjct: 306 YQQPVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNI 365
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFGNILSCKVA D G KGYGFV F +ESA++AI+ LNGM LN ++++VG F +
Sbjct: 366 FSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHK 424
Query: 192 ERDTE 196
ER+ E
Sbjct: 425 EREAE 429
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 259 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 318
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++N + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 319 MNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 374
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++ALNG + ++ +VG+ + ERE E
Sbjct: 375 CKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE 429
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 259 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 318
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N + + + S+R+ L+ K N++IKNL +ID++ L
Sbjct: 319 MNFDVINGRPVRI----MWSQRDPSLR------------KSGVGNVFIKNLGKTIDNKAL 362
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+FS FG+I SCKV D G +G GFV F E A RA+ +NG + + ++V +
Sbjct: 363 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 421
Query: 383 RKEDRRA 389
++R A
Sbjct: 422 SHKEREA 428
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEA 359
F A+LY+ +L + + L + FSP G I S ++ RD ++R G +V + P +A
Sbjct: 255 FPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRD--KVTRRSLGYAYVNYQQPVDA 312
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRR 388
RAL MN ++ +P+ + +QR R
Sbjct: 313 KRALETMNFDVINGRPVRIMWSQRDPSLR 341
>gi|293351002|ref|XP_001054954.2| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 438
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/185 (58%), Positives = 138/185 (74%), Gaps = 2/185 (1%)
Query: 13 GGGANANQ-FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
GG + N F T SLYVGDL VT+S LY+ F+ G ++S+R+CRD TRRSLGY YVN
Sbjct: 228 GGSDDGNPDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVN 287
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ +A RALE +NF +NG+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++
Sbjct: 288 YQQPVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNI 347
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFGNILSCKVA D G KGYGFV F +ESA++AI+ LNGM LN ++++VG F +
Sbjct: 348 FSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHK 406
Query: 192 ERDTE 196
ER+ E
Sbjct: 407 EREAE 411
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 241 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 300
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++N + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 301 MNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 356
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++ALNG + ++ +VG+ + ERE E
Sbjct: 357 CKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE 411
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 241 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 300
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N + + + S+R+ L+ K N++IKNL +ID++ L
Sbjct: 301 MNFDVINGRPVRI----MWSQRDPSLR------------KSGVGNVFIKNLGKTIDNKAL 344
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+FS FG+I SCKV D G +G GFV F E A RA+ +NG + + ++V +
Sbjct: 345 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 403
Query: 383 RKEDRRA 389
++R A
Sbjct: 404 SHKEREA 410
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEA 359
F A+LY+ +L + + L + FSP G I S ++ RD ++R G +V + P +A
Sbjct: 237 FPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRD--KVTRRSLGYAYVNYQQPVDA 294
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRR 388
RAL MN ++ +P+ + +QR R
Sbjct: 295 KRALETMNFDVINGRPVRIMWSQRDPSLR 323
>gi|12836631|dbj|BAB23742.1| unnamed protein product [Mus musculus]
Length = 168
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/167 (63%), Positives = 135/167 (80%), Gaps = 1/167 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 93/171 (54%), Gaps = 6/171 (3%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 18/172 (10%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARA 259
++YV +L TE L + F G I S V RD +S + +VNF+ DA RA
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
++ +N K + S+R+ L+ K N++IKNLD SID+
Sbjct: 69 LDTMNFDVIKGKPVRI----MWSQRDPSLR------------KSGVGNIFIKNLDKSIDN 112
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
+ L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG ++
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|340056243|emb|CCC50573.1| putative polyadenylate-binding protein 1 [Trypanosoma vivax Y486]
Length = 482
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 189/313 (60%), Gaps = 26/313 (8%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+ RDP+LR SG GNIF+KNL +D + L F FG ILSCKV +D G+S+GYGFV
Sbjct: 1 MWQQRDPALRYSGNGNIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEGGRSRGYGFV 60
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQ--------VYVGHFLRKQERDTEINKSKFTNVYVKN 209
F ++ +A+ AIE +NG DK+ +YV +F+R+ R + + FTNVY+K
Sbjct: 61 HFKDDTAAKNAIESMNG----DKEHADAAKAALYVANFIRRNARLAAL-VANFTNVYIKQ 115
Query: 210 LSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA-----LN 264
L + ++ ++K F ++G ITSA +D +G++ F F NFE DDA +A+EA +
Sbjct: 116 LLPTVNKDTIEKFFSKFGGITSAATCKDKNGRA--FAFCNFEKHDDAVKAIEAFHDQVIE 173
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++ YV +AQ +SER + L+ ++ Q G NLY++N D ++ L
Sbjct: 174 GVTPPGEKLYVQRAQPRSERLIALRQKYMQCQS------LGNNLYVRNFDVEFSEKDLHV 227
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LF +G+I SC+VM D +G SRG GFV+F ++A+ AL EMNG+M+ KPL V +AQR+
Sbjct: 228 LFEEYGTIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQRR 287
Query: 385 EDRRARLQVCLLQ 397
+ R L+V Q
Sbjct: 288 DQRFMMLRVQFQQ 300
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 153/310 (49%), Gaps = 21/310 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ V +L +F + G+++S +V D RS GYG+V+F + A A
Sbjct: 13 GNGNIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSD-EGGRSRGYGFVHFKDDTAAKNA 71
Query: 82 LEMLNFTPLNGKPIRVM-----YSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSA 134
+E +N + + + R+ L A N++IK L ++ + FS
Sbjct: 72 IESMNGDKEHADAAKAALYVANFIRRNARLAALVANFTNVYIKQLLPTVNKDTIEKFFSK 131
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK-----LNGMLLNDKQVYVGHFLR 189
FG I S D NG + + F F+ + A KAIE + G+ +++YV
Sbjct: 132 FGGITSAATCKDKNG--RAFAFCNFEKHDDAVKAIEAFHDQVIEGVTPPGEKLYVQRAQP 189
Query: 190 KQERDTEINK------SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ ER + + S N+YV+N +E+DL F EYGTI S VM D +G S+
Sbjct: 190 RSERLIALRQKYMQCQSLGNNLYVRNFDVEFSEKDLHVLFEEYGTIRSCRVMTDANGNSR 249
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
FGFV+FEN+D A A+ +NG+ + K V AQ++ +R + L+ QF+Q M+
Sbjct: 250 GFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRVQFQQRMQMMLRHM 309
Query: 304 QGANLYIKNL 313
+ +L KN
Sbjct: 310 RPMSLGGKNF 319
>gi|441675859|ref|XP_003280927.2| PREDICTED: uncharacterized protein LOC100588478 [Nomascus
leucogenys]
Length = 485
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 111/209 (53%), Positives = 145/209 (69%), Gaps = 3/209 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+ GG F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YV
Sbjct: 274 IRGGYEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYV 333
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
N+ +A RALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++
Sbjct: 334 NYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYN 393
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
FSAFGNILSCKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F
Sbjct: 394 IFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSH 452
Query: 191 QERDTEIN--KSKFTNVYVKNLSESTTEE 217
+ER+ E + T+ VK+ E T EE
Sbjct: 453 KEREAERGAWARQSTSADVKDFEEDTDEE 481
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 16/209 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 288 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 347
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 348 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 403
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G K +GFV+F+ + A RA++ +NG + ++ +VG+ + ERE E
Sbjct: 404 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 462
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDE 320
Q+ +AD +K+ ++ D+E
Sbjct: 463 ARQST--SAD--------VKDFEEDTDEE 481
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 92/190 (48%), Gaps = 18/190 (9%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARA 259
++YV +L TE L + F G I S + RD +S + +VN++ DA RA
Sbjct: 285 PMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRA 344
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
+E LN + + S+R+ L+ K N++IKNL +ID+
Sbjct: 345 LETLNFDVIKGRPVRI----MWSQRDPSLR------------KSGVGNVFIKNLGKTIDN 388
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 389 KALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVG 447
Query: 380 LAQRKEDRRA 389
+ ++R A
Sbjct: 448 RFKSHKEREA 457
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFS 354
E F A+LY+ +L + + L + FSP G I S ++ RD I+R G +V +
Sbjct: 279 EGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRD--KITRRSLGYAYVNYQ 336
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL +N ++ +P+ + +QR R
Sbjct: 337 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 370
>gi|399950033|gb|AFP65689.1| polyadenylate-binding protein [Chroomonas mesostigmatica CCMP1168]
Length = 490
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 121/273 (44%), Positives = 179/273 (65%), Gaps = 6/273 (2%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL V +S L +F+++G+V S+++CRD ST S GY YVNF N ++A +A ++
Sbjct: 36 SLYVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGISRGYSYVNFLNPKDAQKAFKL 95
Query: 85 LNFTP---LNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
LN+ L+ KP+R+M+ +D SLR SG GN+FIKN+ + D+K+L FS FG ILSC
Sbjct: 96 LNYYTDETLHYKPLRIMWVQKDKSLRFSGTGNLFIKNIPRRYDNKSLSKLFSQFGKILSC 155
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KS 200
K+A D N +S GYGFV + E+ ++KAIEK+N ++ ++++VG F+ K +R+ N K
Sbjct: 156 KIALDENKRSMGYGFVHYKEEKDSKKAIEKMNNCFIDGEKIFVGPFISKVKRNNRNNSKL 215
Query: 201 KFTNVYVKN-LSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+FTNVY+KN L ++ E ++ F +G ITS + + + F FVNFEN +DA A
Sbjct: 216 RFTNVYIKNILFQNCNEIYIKDLFEIFGPITSIFIPKANEA-PLGFAFVNFENPEDAEDA 274
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+ +NGKK K YVGKA+ + ER+ L +F
Sbjct: 275 IFKMNGKKIKGKTLYVGKAETRIERQRRLAKKF 307
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 142/282 (50%), Gaps = 17/282 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEK 171
++++ +L ++ +L FS G + S ++ D + G S+GY +V F N + AQKA +
Sbjct: 36 SLYVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGISRGYSYVNFLNPKDAQKAFKL 95
Query: 172 LNGMLLNDKQVYVGHF-LRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN D+ ++ + ++D + S N+++KN+ + L K F ++G I
Sbjct: 96 LN--YYTDETLHYKPLRIMWVQKDKSLRFSGTGNLFIKNIPRRYDNKSLSKLFSQFGKIL 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S + D + +S +GFV+++ D+ +A+E +N D ++ +VG K +R
Sbjct: 154 SCKIALDENKRSMGYGFVHYKEEKDSKKAIEKMNNCFIDGEKIFVGPFISKVKRN----- 208
Query: 291 QFEQNMKEAADKFQGANLYIKN-LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
K + N+YIKN L + ++ +K LF FG ITS + + G
Sbjct: 209 ------NRNNSKLRFTNVYIKNILFQNCNEIYIKDLFEIFGPITSIFIPKANEA-PLGFA 261
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
FV F PE+A A+ +MNGK + K LYV A+ + +R+ RL
Sbjct: 262 FVNFENPEDAEDAIFKMNGKKIKGKTLYVGKAETRIERQRRL 303
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 100/186 (53%), Gaps = 12/186 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
GT +L++ ++ + L LF+Q G+++S ++ D +RS+GYG+V++ +++ +A
Sbjct: 124 GTGNLFIKNIPRRYDNKSLSKLFSQFGKILSCKIALD-ENKRSMGYGFVHYKEEKDSKKA 182
Query: 82 LEMLNFTPLNGKPI-------RVMYSHRDPSLRKSGAGNIFIKN-LDKAIDHKALHDTFS 133
+E +N ++G+ I +V ++R+ S K N++IKN L + + + D F
Sbjct: 183 IEKMNNCFIDGEKIFVGPFISKVKRNNRNNS--KLRFTNVYIKNILFQNCNEIYIKDLFE 240
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FG I S + N G+ FV F+N E A+ AI K+NG + K +YVG + ER
Sbjct: 241 IFGPITSIFIPKA-NEAPLGFAFVNFENPEDAEDAIFKMNGKKIKGKTLYVGKAETRIER 299
Query: 194 DTEINK 199
+ K
Sbjct: 300 QRRLAK 305
>gi|326429915|gb|EGD75485.1| poly(A)-binding protein [Salpingoeca sp. ATCC 50818]
Length = 1688
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 150/444 (33%), Positives = 225/444 (50%), Gaps = 83/444 (18%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVGDL V +++L++LF+ +G V+SVRVCRD T SLGYGYVNF+ A++A A+
Sbjct: 248 TSLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITHGSLGYGYVNFNKAEDAEAAMG 307
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF L+G+ IR+M RDP R+S NI + L L DTF FG ILSCK
Sbjct: 308 QLNFHDLHGRHIRIMKVERDPKKRRSDPRNIVVTGLPADTTSVHLRDTFEQFGKILSCKA 367
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHF-LRKQ-ERDTEINKS 200
D +G+ +G+GFV F++ + A++AI + NG D+++ V F RKQ E++ E
Sbjct: 368 VLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQEQEERTK 427
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV----MRDGDGKSKCFGFVNFENSDDA 256
FTNVYVK+L EE+L K F YG ITS + ++D + + +GFVNF +++ A
Sbjct: 428 NFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTE---RPYGFVNFADTEAA 484
Query: 257 ARAVEA----------LNGKKFDDK---EWYVGKAQKKSERELELKHQ------------ 291
+ VE ++G F++ E +V ++ + E+E H
Sbjct: 485 QKCVEEGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQVADGKLSGFIL 544
Query: 292 ---------------FEQNMKEAADKFQGANLY--------------------------- 309
+ M+ A D A LY
Sbjct: 545 FKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQTKQERIRRLRRRLQERRRELRQ 604
Query: 310 ------IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
+KN ++++ +E L++ F G + KVMRD G+SR GFV F+T EEA A+
Sbjct: 605 RGGNLFVKNFNENVTEEDLRKFFEECGHVIDVKVMRDMEGVSRCFGFVIFATREEAESAI 664
Query: 364 LEMNGKMVVSKPLYVALAQRKEDR 387
+ N + + +P+YVA +++R
Sbjct: 665 AKKNRQTLQDRPIYVAFHLTRQER 688
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVAFSTPEEASR 361
G +LY+ +L +++ +L LFS GS+ S +V RD I+ GS G+V F+ E+A
Sbjct: 247 GTSLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRD--QITHGSLGYGYVNFNKAEDAEA 304
Query: 362 ALLEMN 367
A+ ++N
Sbjct: 305 AMGQLN 310
>gi|395754119|ref|XP_002831853.2| PREDICTED: uncharacterized protein LOC100437512 [Pongo abelii]
Length = 528
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/199 (54%), Positives = 142/199 (71%), Gaps = 3/199 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A R
Sbjct: 327 FPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 386
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILS
Sbjct: 387 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 446
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--IN 198
CKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E
Sbjct: 447 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 505
Query: 199 KSKFTNVYVKNLSESTTEE 217
+ T+ VK+ E T EE
Sbjct: 506 ARQSTSADVKDFEEDTDEE 524
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 16/209 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 331 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 390
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 391 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 446
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G K +GFV+F+ + A RA++ +NG + ++ +VG+ + ERE E
Sbjct: 447 CKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 505
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDE 320
Q+ +AD +K+ ++ D+E
Sbjct: 506 ARQST--SAD--------VKDFEEDTDEE 524
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 22/192 (11%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARA 259
++YV +L TE L + F G I S + RD +S + +VN++ DA RA
Sbjct: 328 PMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRA 387
Query: 260 VEALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+E LN FD + G+ + S+R+ L+ K N++IKNL +I
Sbjct: 388 LETLN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTI 429
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++
Sbjct: 430 DNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIF 488
Query: 378 VALAQRKEDRRA 389
V + ++R A
Sbjct: 489 VGRFKSHKEREA 500
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFS 354
E F A+LY+ +L + + L + FSP G I S ++ RD I+R G +V +
Sbjct: 322 EGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRD--KITRRSLGYAYVNYQ 379
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL +N ++ +P+ + +QR R
Sbjct: 380 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 413
>gi|309271474|ref|XP_003085306.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Mus
musculus]
Length = 229
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/185 (58%), Positives = 138/185 (74%), Gaps = 2/185 (1%)
Query: 13 GGGANANQ-FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
GG + N F T SLYVGDL VT+S LY+ F+ G ++S+R+CRD TRRSLGY YVN
Sbjct: 19 GGSDDGNPDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVN 78
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ +A RALE +NF +NG+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++
Sbjct: 79 YQQPVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNI 138
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFGNILSCKVA D G KGYGFV F +ESA++AI+ LNGM LN ++++VG F +
Sbjct: 139 FSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHK 197
Query: 192 ERDTE 196
ER+ E
Sbjct: 198 EREAE 202
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 32 SLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALET 91
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++N + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 92 MNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 147
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++ALNG + ++ +VG+ + ERE E
Sbjct: 148 CKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE 202
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 18/188 (9%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 31 ASLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALE 90
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+N + + + S+R+ L+ K N++IKNL +ID++
Sbjct: 91 TMNFDVINGRPVRI----MWSQRDPSLR------------KSGVGNVFIKNLGKTIDNKA 134
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L +FS FG+I SCKV D G +G GFV F E A RA+ +NG + + ++V
Sbjct: 135 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRF 193
Query: 382 QRKEDRRA 389
+ ++R A
Sbjct: 194 KSHKEREA 201
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASR 361
F A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A R
Sbjct: 28 FPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKR 87
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRR 388
AL MN ++ +P+ + +QR R
Sbjct: 88 ALETMNFDVINGRPVRIMWSQRDPSLR 114
>gi|426396432|ref|XP_004064447.1| PREDICTED: uncharacterized protein LOC101125114 [Gorilla gorilla
gorilla]
Length = 533
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/199 (54%), Positives = 142/199 (71%), Gaps = 3/199 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A R
Sbjct: 332 FQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 391
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILS
Sbjct: 392 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 451
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-- 198
CKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E
Sbjct: 452 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 510
Query: 199 KSKFTNVYVKNLSESTTEE 217
+ T+ VK+ E T EE
Sbjct: 511 ARQSTSADVKDFEEDTDEE 529
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 16/209 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 336 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 395
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 396 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 451
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G K +GFV+F+ + A RA++ +NG + ++ +VG+ + ERE E
Sbjct: 452 CKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 510
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDE 320
Q+ +AD +K+ ++ D+E
Sbjct: 511 ARQST--SAD--------VKDFEEDTDEE 529
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 22/192 (11%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARA 259
+ ++YV +L TE L + F G I S + RD +S + +VN++ DA RA
Sbjct: 333 QMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRA 392
Query: 260 VEALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+E LN FD + G+ + S+R+ L+ K N++IKNL +I
Sbjct: 393 LETLN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTI 434
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++
Sbjct: 435 DNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIF 493
Query: 378 VALAQRKEDRRA 389
V + ++R A
Sbjct: 494 VGRFKSHKEREA 505
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFS 354
E FQ A+LY+ +L + + L + FSP G I S ++ RD I+R G +V +
Sbjct: 327 EGNPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRD--KITRRSLGYAYVNYQ 384
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL +N ++ +P+ + +QR R
Sbjct: 385 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 418
>gi|296470851|tpg|DAA12966.1| TPA: PABPC1L2B protein-like [Bos taurus]
Length = 489
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/209 (53%), Positives = 146/209 (69%), Gaps = 4/209 (1%)
Query: 12 NGGGANANQ-FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
G G+ N F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YV
Sbjct: 278 TGRGSERNPNFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYV 337
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
N+ +A RALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++
Sbjct: 338 NYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYN 397
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
FSAFGNILSCKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F
Sbjct: 398 IFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSH 456
Query: 191 QERDTEIN--KSKFTNVYVKNLSESTTEE 217
+ER+ E + T+ VK+ E T EE
Sbjct: 457 KEREAERGAWARQSTSADVKDFEEDTDEE 485
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 9/189 (4%)
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQ 158
S R+P+ + ++++ +L + L++ FS G ILS ++ D + +S GY +V
Sbjct: 282 SERNPNFPMA---SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVN 338
Query: 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEED 218
+ A++A+E LN ++ + V + +RD + KS NV++KNL ++ +
Sbjct: 339 YQQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKA 394
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L F +G I S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+
Sbjct: 395 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 453
Query: 279 QKKSERELE 287
+ ERE E
Sbjct: 454 KSHKEREAE 462
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 19/199 (9%)
Query: 193 RDTEINKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNF 250
R +E N + ++YV +L TE L + F G I S + RD +S + +VN+
Sbjct: 280 RGSERNPNFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNY 339
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
+ DA RA+E LN + + S+R+ L+ K N++I
Sbjct: 340 QQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLR------------KSGVGNVFI 383
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNL +ID++ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG
Sbjct: 384 KNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMF 442
Query: 371 VVSKPLYVALAQRKEDRRA 389
+ + ++V + ++R A
Sbjct: 443 LNYRKIFVGRFKSHKEREA 461
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 113/190 (59%), Positives = 146/190 (76%), Gaps = 1/190 (0%)
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E +DA +AVE
Sbjct: 1 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 60
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEK
Sbjct: 61 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 120
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALA
Sbjct: 121 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 179
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 180 QRKEERKAHL 189
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 117/189 (61%), Gaps = 15/189 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKN + +D ++L + FS FG LS KV D NG+SKG+GFV ++ E A KA+E++
Sbjct: 3 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 62
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDL 219
NG ++ K ++VG +K ER E+ K KF N+Y+KNL ++ +E L
Sbjct: 63 NGKEISGKIIFVGRAQKKVERQAEL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 121
Query: 220 QKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
+K F +G+ITSA VM + DG+SK FGFV F + ++A +AV +NG+ K YV AQ
Sbjct: 122 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 180
Query: 280 KKSERELEL 288
+K ER+ L
Sbjct: 181 RKEERKAHL 189
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 108/191 (56%), Gaps = 18/191 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ + V D L +LF+Q G+ +SV+V RD + +S G+G+V++ ++A +A+E
Sbjct: 2 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG-KSKGFGFVSYEKHEDANKAVE 60
Query: 84 MLNFTPLNGKPIRVMYSH----RDPSLRKS------------GAGNIFIKNLDKAIDHKA 127
+N ++GK I V + R L++ N++IKNLD ID +
Sbjct: 61 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 120
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++NG ++ K +YV
Sbjct: 121 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 179
Query: 188 LRKQERDTEIN 198
RK+ER +
Sbjct: 180 QRKEERKAHLT 190
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 65/94 (69%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV++ E+A++A+ E
Sbjct: 2 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 61
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
MNGK + K ++V AQ+K +R+A L+ Q +
Sbjct: 62 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 95
>gi|297304162|ref|XP_002806331.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Macaca mulatta]
Length = 249
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 112/207 (54%), Positives = 145/207 (70%), Gaps = 4/207 (1%)
Query: 14 GGANANQ-FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GG N F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+
Sbjct: 40 GGCEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNY 99
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
+A RALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ F
Sbjct: 100 QQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIF 159
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
SAFGNILSCKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +E
Sbjct: 160 SAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKE 218
Query: 193 RDTEIN--KSKFTNVYVKNLSESTTEE 217
R+ E + T+ VK+ E T EE
Sbjct: 219 REAERGAWARQSTSADVKDFEEDTDEE 245
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 94/176 (53%), Gaps = 6/176 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 52 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 111
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 112 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 167
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++ +NG + ++ +VG+ + ERE E
Sbjct: 168 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 222
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 18/189 (9%)
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAV 260
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+
Sbjct: 50 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 109
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN + + S+R+ L+ K N++IKNL +ID++
Sbjct: 110 ETLNFDVIKGRPVRI----MWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 153
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 154 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGR 212
Query: 381 AQRKEDRRA 389
+ ++R A
Sbjct: 213 FKSHKEREA 221
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFS 354
E F A+LY+ +L + + L + FSP G I S ++ RD I+R G +V +
Sbjct: 43 EGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDK--ITRRSLGYAYVNYQ 100
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL +N ++ +P+ + +QR R
Sbjct: 101 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 134
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 108/196 (55%), Positives = 146/196 (74%), Gaps = 6/196 (3%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV + +G+SKG+GFV F + E A KA+ ++NG ++ K +YV RK+ER
Sbjct: 123 GNILSCKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER-- 179
Query: 196 EINKSKFTNVYVKNLS 211
K+ TN Y++ ++
Sbjct: 180 ---KAHLTNQYMQRVA 192
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 111/192 (57%), Gaps = 18/192 (9%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARA 259
++YV +L TE L + F G + S V RD +S + +VNF+ DA RA
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
++ +N K + S+R+ L+ K N++IKNLD SID+
Sbjct: 69 LDTMNFDVIKGKPIRI----MWSQRDPSLR------------KSGVGNVFIKNLDKSIDN 112
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L FS FG+I SCKVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVA
Sbjct: 113 KALYDTFSAFGNILSCKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 171
Query: 380 LAQRKEDRRARL 391
LAQRKE+R+A L
Sbjct: 172 LAQRKEERKAHL 183
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 103/185 (55%), Gaps = 6/185 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
VM + DG+SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q
Sbjct: 128 CKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQ 186
Query: 292 FEQNM 296
+ Q +
Sbjct: 187 YMQRV 191
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|344281908|ref|XP_003412718.1| PREDICTED: hypothetical protein LOC100663984 [Loxodonta africana]
Length = 640
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/197 (54%), Positives = 142/197 (72%), Gaps = 3/197 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVGDL VT++ LY+ F+ G+++S+R+CRD TRRSLGY YVN+ +A RAL
Sbjct: 441 TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 500
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FS FGNILSCK
Sbjct: 501 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCK 560
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--INKS 200
VA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E
Sbjct: 561 VACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWAR 619
Query: 201 KFTNVYVKNLSESTTEE 217
+ T+ VK+ E T EE
Sbjct: 620 QSTSADVKDFDEDTDEE 636
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 21/226 (9%)
Query: 96 RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGY 154
R++ + DP ++++ +L + L++ FS G ILS ++ D + +S GY
Sbjct: 431 RIISASPDPP-----TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGY 485
Query: 155 GFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
+V + A++A+E LN ++ + V + +RD + KS NV++KNL ++
Sbjct: 486 AYVNYQQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTI 541
Query: 215 TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274
+ L F +G I S V D G K +GFV+F+ + A RA++ +NG + ++ +
Sbjct: 542 DNKALYNIFSTFGNILSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIF 600
Query: 275 VGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
VG+ + ERE E A Q + +K+ D+ D+E
Sbjct: 601 VGRFKSHKEREAE----------RGAWARQSTSADVKDFDEDTDEE 636
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 443 SLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 502
Query: 263 LNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 503 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 544
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 545 ALYNIFSTFGNILSCKVACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGR 603
Query: 381 AQRKEDRRA 389
+ ++R A
Sbjct: 604 FKSHKEREA 612
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GS 348
+ + + A+ A+LY+ +L + + L + FSP G I S ++ RD I+R G
Sbjct: 428 YTKRIISASPDPPTASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRD--KITRRSLGY 485
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+V + P +A RAL +N ++ +P+ + +QR R
Sbjct: 486 AYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 525
>gi|395863403|ref|XP_003803885.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Otolemur garnettii]
Length = 203
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/199 (54%), Positives = 142/199 (71%), Gaps = 3/199 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A R
Sbjct: 2 FPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 61
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILS
Sbjct: 62 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 121
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--IN 198
CKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E
Sbjct: 122 CKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 180
Query: 199 KSKFTNVYVKNLSESTTEE 217
+ T+ VK+ E T EE
Sbjct: 181 ARQSTSADVKDFEEDTDEE 199
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 5 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 64
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 65 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 120
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 121 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 176
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 22/190 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 5 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 64
Query: 262 ALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
LN FD + G+ + S+R+ L+ K N++IKNL +ID+
Sbjct: 65 TLN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDN 106
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 107 KALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 165
Query: 380 LAQRKEDRRA 389
+ ++R A
Sbjct: 166 RFKSHKEREA 175
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASR 361
F A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A R
Sbjct: 2 FPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 61
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRR 388
AL +N ++ +P+ + +QR R
Sbjct: 62 ALETLNFDVIKGRPVRIMWSQRDPSLR 88
>gi|397508069|ref|XP_003824497.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Pan paniscus]
Length = 293
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/199 (54%), Positives = 142/199 (71%), Gaps = 3/199 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A R
Sbjct: 92 FQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 151
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILS
Sbjct: 152 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 211
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-- 198
CKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E
Sbjct: 212 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 270
Query: 199 KSKFTNVYVKNLSESTTEE 217
+ T+ VK+ E T EE
Sbjct: 271 ARQSTSADVKDFEEDTDEE 289
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 94/176 (53%), Gaps = 6/176 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 96 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 155
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 156 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 211
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++ +NG + ++ +VG+ + ERE E
Sbjct: 212 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 266
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 18/190 (9%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARA 259
+ ++YV +L TE L + F G I S + RD +S + +VN++ DA RA
Sbjct: 93 QMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRA 152
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
+E LN + + S+R+ L+ K N++IKNL +ID+
Sbjct: 153 LETLNFDVIKGRPVRI----MWSQRDPSLR------------KSGVGNVFIKNLGKTIDN 196
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 197 KALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVG 255
Query: 380 LAQRKEDRRA 389
+ ++R A
Sbjct: 256 RFKSHKEREA 265
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFS 354
E FQ A+LY+ +L + + L + FSP G I S ++ RD I+R G +V +
Sbjct: 87 EGNPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRD--KITRRSLGYAYVNYQ 144
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL +N ++ +P+ + +QR R
Sbjct: 145 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 178
>gi|291407697|ref|XP_002720156.1| PREDICTED: polyadenylate-binding protein 1-like [Oryctolagus
cuniculus]
gi|301792853|ref|XP_002931393.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Ailuropoda
melanoleuca]
gi|311276495|ref|XP_003135232.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|335306198|ref|XP_003360416.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|281338845|gb|EFB14429.1| hypothetical protein PANDA_022442 [Ailuropoda melanoleuca]
Length = 200
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/196 (55%), Positives = 141/196 (71%), Gaps = 3/196 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--INKSK 201
A D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 202 FTNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 22/190 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 262 ALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
LN FD + G+ + S+R+ L+ K N++IKNL +ID+
Sbjct: 62 TLN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDN 103
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 104 KALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 162
Query: 380 LAQRKEDRRA 389
+ ++R A
Sbjct: 163 RFKSHKEREA 172
>gi|359081870|ref|XP_003588203.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|395862938|ref|XP_003803673.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Otolemur
garnettii]
Length = 200
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 108/196 (55%), Positives = 141/196 (71%), Gaps = 3/196 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--INKSK 201
A D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 202 FTNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 22/190 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 262 ALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
LN FD + G+ + S+R+ L+ K N++IKNL +ID+
Sbjct: 62 TLN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDN 103
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 104 KALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 162
Query: 380 LAQRKEDRRA 389
+ ++R A
Sbjct: 163 RFKSHKEREA 172
>gi|380799249|gb|AFE71500.1| polyadenylate-binding protein 5, partial [Macaca mulatta]
Length = 256
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 128/253 (50%), Positives = 173/253 (68%), Gaps = 5/253 (1%)
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
SAFGNILSCKV D NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +E
Sbjct: 1 SAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 59
Query: 193 RDTEI---NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
R E+ +++ FTNV+VKN+ + +E L++ F EYG S V+RD GKSK FGFV
Sbjct: 60 RAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 119
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
+E + A +AV L+GK D K YVG+AQKK ER EL+ +FE+ + + G +Y
Sbjct: 120 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 179
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
IKNLD++I+DEKLK+ FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG+
Sbjct: 180 IKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 238
Query: 370 MVVSKPLYVALAQ 382
+V SKPL+V L Q
Sbjct: 239 VVGSKPLHVTLGQ 251
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 140/257 (54%), Gaps = 26/257 (10%)
Query: 47 MGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSH 101
G ++S +V C D ++ GY YV+F + A RA+ +N LN + + V
Sbjct: 3 FGNILSCKVVCDDNGSK---GYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 59
Query: 102 RDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQ 158
R +R ++ N+F+KN+ ID + L + F +G S KV D +G+SKG+GFV+
Sbjct: 60 RAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 119
Query: 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER------------DTEINKSKFTNVY 206
++ E+AQKA+ L+G ++ K +YVG +K ER E ++ +Y
Sbjct: 120 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 179
Query: 207 VKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK 266
+KNL E+ +E L++ F +G+I+ A VM + G+ K FG V F + ++A +AV+ +NG+
Sbjct: 180 IKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 238
Query: 267 KFDDKEWYV--GKAQKK 281
K +V G+A+++
Sbjct: 239 VVGSKPLHVTLGQARRR 255
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 102/164 (62%), Gaps = 10/164 (6%)
Query: 226 YGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
+G I S V+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER
Sbjct: 3 FGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERA 61
Query: 286 LELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS 345
E++ + D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S
Sbjct: 62 AEVRTR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKS 112
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
+G GFV + T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 113 KGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 156
>gi|194228035|ref|XP_001914759.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Equus
caballus]
Length = 200
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 108/196 (55%), Positives = 140/196 (71%), Gaps = 3/196 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL VT++ LY+ F G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--INKSK 201
A D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 202 FTNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 94/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ F G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 22/190 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 262 ALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
LN FD + G+ + S+R+ L+ K N++IKNL +ID+
Sbjct: 62 TLN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDN 103
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 104 KALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 162
Query: 380 LAQRKEDRRA 389
+ ++R A
Sbjct: 163 RFKSHKEREA 172
>gi|61175237|ref|NP_001012995.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|109948285|ref|NP_001035971.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|402910552|ref|XP_003917938.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Papio anubis]
gi|426396426|ref|XP_004064444.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Gorilla gorilla
gorilla]
gi|74755614|sp|Q5JQF8.1|PAP1M_HUMAN RecName: Full=Polyadenylate-binding protein 1-like 2; AltName:
Full=RNA-binding motif protein 32; AltName:
Full=RNA-binding protein 32
gi|119619077|gb|EAW98671.1| hCG1811470 [Homo sapiens]
gi|187951483|gb|AAI36493.1| PABPC1L2A protein [Homo sapiens]
gi|261861056|dbj|BAI47050.1| poly(A) binding protein, cytoplasmic 1-like 2A [synthetic
construct]
gi|355704922|gb|EHH30847.1| RNA-binding protein 32 [Macaca mulatta]
gi|355767263|gb|EHH62597.1| RNA-binding protein 32 [Macaca fascicularis]
gi|380784435|gb|AFE64093.1| polyadenylate-binding protein 1-like 2 [Macaca mulatta]
Length = 200
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 108/196 (55%), Positives = 141/196 (71%), Gaps = 3/196 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--INKSK 201
A D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 202 FTNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 94/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++ +NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 22/190 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 262 ALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
LN FD + G+ + S+R+ L+ K N++IKNL +ID+
Sbjct: 62 TLN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDN 103
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 104 KALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVG 162
Query: 380 LAQRKEDRRA 389
+ ++R A
Sbjct: 163 RFKSHKEREA 172
>gi|119923699|ref|XP_599343.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|297493007|ref|XP_002700050.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|358420984|ref|XP_003584787.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|296470850|tpg|DAA12965.1| TPA: PABPC1L2B protein-like [Bos taurus]
gi|440892195|gb|ELR45496.1| Polyadenylate-binding protein 1-like 2 [Bos grunniens mutus]
Length = 200
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 108/196 (55%), Positives = 141/196 (71%), Gaps = 3/196 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--INKSK 201
A D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 202 FTNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 22/190 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 262 ALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
LN FD + G+ + S+R+ L+ K N++IKNL +ID+
Sbjct: 62 TLN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDN 103
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 104 KALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 162
Query: 380 LAQRKEDRRA 389
+ ++R A
Sbjct: 163 RFKSHKEREA 172
>gi|426257244|ref|XP_004022242.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Ovis aries]
Length = 200
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/196 (55%), Positives = 141/196 (71%), Gaps = 3/196 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--INKSK 201
A D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 202 FTNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 22/190 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 262 ALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
LN FD + G+ + S+R+ L+ K N++IKNL +ID+
Sbjct: 62 TLN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDN 103
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 104 KALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 162
Query: 380 LAQRKEDRRA 389
+ ++R A
Sbjct: 163 RFKSHKEREA 172
>gi|444516866|gb|ELV11302.1| Polyadenylate-binding protein 1-like 2 [Tupaia chinensis]
Length = 200
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/196 (54%), Positives = 141/196 (71%), Gaps = 3/196 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--INKSK 201
A D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 202 FTNVYVKNLSESTTEE 217
T+ VK+ + T EE
Sbjct: 181 STSADVKDFEDDTDEE 196
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 16/210 (7%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE--- 173
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
A Q + +K+ +D D+E
Sbjct: 174 -------RGAWARQSTSADVKDFEDDTDEE 196
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 22/190 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 262 ALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
LN FD + G+ + S+R+ L+ K N++IKNL +ID+
Sbjct: 62 TLN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDN 103
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 104 KALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 162
Query: 380 LAQRKEDRRA 389
+ ++R A
Sbjct: 163 RFKSHKEREA 172
>gi|344281910|ref|XP_003412719.1| PREDICTED: hypothetical protein LOC100664266 [Loxodonta africana]
Length = 708
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/173 (57%), Positives = 132/173 (76%), Gaps = 1/173 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVGDL VT++ LY+ F+ G+++S+R+CRD TRRSLGY YVN+ +A RAL
Sbjct: 350 TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 409
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FS FGNILSCK
Sbjct: 410 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCK 469
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
VA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER++
Sbjct: 470 VACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKERES 521
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 99/191 (51%), Gaps = 11/191 (5%)
Query: 96 RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGY 154
R++ + DP ++++ +L + L++ FS G ILS ++ D + +S GY
Sbjct: 340 RIISASPDPP-----TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGY 394
Query: 155 GFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
+V + A++A+E LN ++ + V + +RD + KS NV++KNL ++
Sbjct: 395 AYVNYQQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTI 450
Query: 215 TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274
+ L F +G I S V D G K +GFV+F+ + A RA++ +NG + ++ +
Sbjct: 451 DNKALYNIFSTFGNILSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIF 509
Query: 275 VGKAQKKSERE 285
VG+ + ERE
Sbjct: 510 VGRFKSHKERE 520
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 95/187 (50%), Gaps = 22/187 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 352 SLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 411
Query: 263 LNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 412 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 453
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 454 ALYNIFSTFGNILSCKVACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGR 512
Query: 381 AQRKEDR 387
+ ++R
Sbjct: 513 FKSHKER 519
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GS 348
+ + + A+ A+LY+ +L + + L + FSP G I S ++ RD I+R G
Sbjct: 337 YTKRIISASPDPPTASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRD--KITRRSLGY 394
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+V + P +A RAL +N ++ +P+ + +QR R
Sbjct: 395 AYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 434
>gi|348570494|ref|XP_003471032.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Cavia
porcellus]
Length = 200
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/196 (54%), Positives = 140/196 (71%), Gaps = 3/196 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--INKSK 201
A D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 202 FTNVYVKNLSESTTEE 217
T+ K+ E T EE
Sbjct: 181 STSADCKDFEEDTDEE 196
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 22/190 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 262 ALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
LN FD + G+ + S+R+ L+ K N++IKNL +ID+
Sbjct: 62 TLN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDN 103
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 104 KALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 162
Query: 380 LAQRKEDRRA 389
+ ++R A
Sbjct: 163 RFKSHKEREA 172
>gi|27469824|gb|AAH41956.1| PABPC1L2B protein [Homo sapiens]
Length = 243
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/199 (54%), Positives = 141/199 (70%), Gaps = 3/199 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F SLYVGDL VT++ LY+ F+ G ++S+ +CRD TRRSLGY YVN+ +A R
Sbjct: 42 FQMASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKR 101
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILS
Sbjct: 102 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 161
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--IN 198
CKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E
Sbjct: 162 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 220
Query: 199 KSKFTNVYVKNLSESTTEE 217
+ T+ VK+ E T EE
Sbjct: 221 ARQSTSADVKDFEEDTDEE 239
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS + D + +S GY +V + A++A+E
Sbjct: 45 ASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKRALE 104
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 105 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 160
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++ +NG + ++ +VG+ + ERE E
Sbjct: 161 SCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 216
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 22/192 (11%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARA 259
+ ++YV +L TE L + F G I S + RD +S + +VN++ DA RA
Sbjct: 43 QMASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKRA 102
Query: 260 VEALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+E LN FD + G+ + S+R+ L+ K N++IKNL +I
Sbjct: 103 LETLN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTI 144
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++
Sbjct: 145 DNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIF 203
Query: 378 VALAQRKEDRRA 389
V + ++R A
Sbjct: 204 VGRFKSHKEREA 215
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTP 356
E FQ A+LY+ +L + + L + FSP G I S + RD + S G +V + P
Sbjct: 37 EGNPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQP 96
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+A RAL +N ++ +P+ + +QR R
Sbjct: 97 VDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 128
>gi|431844457|gb|ELK01429.1| Polyadenylate-binding protein 1-like 2 [Pteropus alecto]
Length = 200
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 131/173 (75%), Gaps = 1/173 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALE 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K+ID+KAL++ FSAFGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIFSAFGNILSCKV 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
A D G KGYGFV F +ESA++AI +NGM LN ++++VG F +ER+ E
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 6/176 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALET 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL +S + L F +G I S
Sbjct: 63 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA+ A+NG + ++ +VG+ + ERE E
Sbjct: 119 CKVACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 96/190 (50%), Gaps = 22/190 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALE 61
Query: 262 ALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
LN FD + G+ + S+R+ L+ K N++IKNL SID+
Sbjct: 62 TLN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKSIDN 103
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 104 KALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVG 162
Query: 380 LAQRKEDRRA 389
+ ++R A
Sbjct: 163 RFKSHKEREA 172
>gi|449486336|ref|XP_004177123.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Taeniopygia guttata]
Length = 167
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 99/162 (61%), Positives = 129/162 (79%), Gaps = 1/162 (0%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF +A R
Sbjct: 7 YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAER 66
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD +ID+KAL+DTFSAFGNILS
Sbjct: 67 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILS 126
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
CKV D NG S+GYGFV F+ E+A +AIE +NGMLLND++V
Sbjct: 127 CKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKV 167
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 91/172 (52%), Gaps = 18/172 (10%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARA 259
++YV +L TE L + F G I S V RD +S + ++NF+ DA RA
Sbjct: 8 PLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERA 67
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
++ +N + + + S+R+ L+ K N++IKNLDDSID+
Sbjct: 68 LDTMNFEVIKGRPIRI----MWSQRDPGLR------------KSGVGNVFIKNLDDSIDN 111
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
+ L FS FG+I SCKV+ D +G SRG GFV F T E A+RA+ MNG ++
Sbjct: 112 KALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLL 162
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 93/170 (54%), Gaps = 10/170 (5%)
Query: 108 KSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNE 162
SG G ++++ +L + L++ FS G I+S +V D+ +S GY ++ F
Sbjct: 2 PSGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQP 61
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A++A++ +N ++ + + + +RD + KS NV++KNL +S + L +
Sbjct: 62 ADAERALDTMNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDT 117
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
F +G I S V+ D +G S+ +GFV+FE + A RA+E +NG +D++
Sbjct: 118 FSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRK 166
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S +V RD + S G ++ F P +A RAL
Sbjct: 10 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 69
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
MN +++ +P+ + +QR R
Sbjct: 70 TMNFEVIKGRPIRIMWSQRDPGLR 93
>gi|5007080|gb|AAD37807.1| poly(A)-binding protein [Oryza sativa]
Length = 183
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/142 (72%), Positives = 125/142 (88%)
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AV+ LNGKKFDDKEWYVG+AQKKS RE+ELK +FE+N++EAADK+Q NLY+KNLDDS+
Sbjct: 1 QAVQELNGKKFDDKEWYVGRAQKKSGREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSV 60
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DD+KL++LF+ +G+ITSCKVMRD +G+SRGSGFVAF + E+ASRAL EMN KMV SKPLY
Sbjct: 61 DDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLY 120
Query: 378 VALAQRKEDRRARLQVCLLQCR 399
VALAQRKEDR+ARLQ Q R
Sbjct: 121 VALAQRKEDRKARLQAQFSQLR 142
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 87/141 (61%), Gaps = 14/141 (9%)
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSES 213
+A+++LNG +DK+ YVG +K R+ E+ K KF TN+Y+KNL +S
Sbjct: 1 QAVQELNGKKFDDKEWYVGRAQKKSGREMEL-KEKFEKNLQEAADKYQNTNLYLKNLDDS 59
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW 273
++ L++ F EYGTITS VMRD +G S+ GFV F++++DA+RA+ +N K K
Sbjct: 60 VDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPL 119
Query: 274 YVGKAQKKSERELELKHQFEQ 294
YV AQ+K +R+ L+ QF Q
Sbjct: 120 YVALAQRKEDRKARLQAQFSQ 140
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KNLD ++D L + F+ +G I SCKV D NG S+G GFV F + E A +A+ ++
Sbjct: 50 NLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEM 109
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
N ++ K +YV RK++R + +++F+ + L+ S
Sbjct: 110 NSKMVGSKPLYVALAQRKEDRKARL-QAQFSQLRPVPLAPSV 150
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+++ T+LY+ +L+ +V D +L +LF + G + S +V RD S S G G+V F +A++
Sbjct: 43 ADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRD-SNGVSRGSGFVAFKSAED 101
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A+RAL +N + KP+ V + R
Sbjct: 102 ASRALAEMNSKMVGSKPLYVALAQR 126
>gi|351699464|gb|EHB02383.1| Polyadenylate-binding protein 1-like 2 [Heterocephalus glaber]
Length = 200
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/173 (57%), Positives = 130/173 (75%), Gaps = 1/173 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCKV 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
A D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 22/190 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 262 ALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
LN FD + G+ + S+R+ L+ K N++IKNL +ID+
Sbjct: 62 TLN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDN 103
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 104 KALYNIFSTFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 162
Query: 380 LAQRKEDRRA 389
+ ++R A
Sbjct: 163 RFKSHKEREA 172
>gi|123408784|ref|XP_001303266.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884631|gb|EAX90336.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 461
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 125/347 (36%), Positives = 211/347 (60%), Gaps = 11/347 (3%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
TT ++VGDL ++ +S L F + G+++ S V + T S + +V F+ ++AA+
Sbjct: 5 TTQIFVGDLPKDIDESFLKQFFAESGEIIPNSGIVLKKHKTLDS-SFAFVTFATHEQAAK 63
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDP-SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
A++ LN+T L+G+PIR+++ + ++ KSG G++FI LD++I+ LHD FS FG I+
Sbjct: 64 AMKNLNYTKLDGRPIRILWCDTETKAIIKSGRGSLFINGLDESIEVSQLHDAFSNFGEII 123
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
SCK+ +G+S+GYG++QF N E+A+KA +L +N K + + ++ RK R+ +
Sbjct: 124 SCKIPL-TDGKSRGYGYIQFRNPENAEKAKLELADASINGKPIKIDNYNRKSRRNPD--- 179
Query: 200 SKFTNVYVKNLS--ESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
FTNVY+K L + T+EDL+K F +G I + + +D +G SK FGF NF+ +DA
Sbjct: 180 EDFTNVYIKPLPVDQVKTDEDLRKIFEPFGEIQNPSLKKDENGNSKGFGFCNFKLHEDAV 239
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVE LNG++ V + K E+EL + + +++ A++ G NLY+K+ +
Sbjct: 240 KAVEGLNGQEMFGVTLQVNRLMSKREKELYNIKKHTEKVEKFAEETNGRNLYVKSFSKDV 299
Query: 318 DDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRAL 363
D++ ++ FS FG I K+ R P + S+G GFV + + E+A A+
Sbjct: 300 TDKEFQEYFSKFGEIELFKIERVPETKESKGFGFVLYKSKEDAQNAI 346
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 145/284 (51%), Gaps = 26/284 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G SL++ L+ ++ SQL+D F+ G+++S ++ L+ +S GYGY+ F N + A +A
Sbjct: 94 GRGSLFINGLDESIEVSQLHDAFSNFGEIISCKI--PLTDGKSRGYGYIQFRNPENAEKA 151
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNL--DKAIDHKALHDTFSAF 135
L +NGKPI++ S R+P N++IK L D+ + L F F
Sbjct: 152 KLELADASINGKPIKIDNYNRKSRRNPD---EDFTNVYIKPLPVDQVKTDEDLRKIFEPF 208
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I + + D NG SKG+GF F E A KA+E LNG + + V + K+E++
Sbjct: 209 GEIQNPSLKKDENGNSKGFGFCNFKLHEDAVKAVEGLNGQEMFGVTLQVNRLMSKREKEL 268
Query: 196 EINKSKFT-------------NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK- 241
N K T N+YVK+ S+ T+++ Q+ F ++G I + R + K
Sbjct: 269 -YNIKKHTEKVEKFAEETNGRNLYVKSFSKDVTDKEFQEYFSKFGEIELFKIERVPETKE 327
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
SK FGFV +++ +DA A+E ++ YVG Q K+ E
Sbjct: 328 SKGFGFVLYKSKEDAQNAIEMAMLERLHGDLPYVGFFQTKAAHE 371
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 124/272 (45%), Gaps = 29/272 (10%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNIL--SCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 171
IF+ +L K ID L F+ G I+ S V + FV F E A KA++
Sbjct: 8 IFVGDLPKDIDESFLKQFFAESGEIIPNSGIVLKKHKTLDSSFAFVTFATHEQAAKAMKN 67
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTE---INKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
LN L+ G +R DTE I KS ++++ L ES L +F +G
Sbjct: 68 LNYTKLD------GRPIRILWCDTETKAIIKSGRGSLFINGLDESIEVSQLHDAFSNFGE 121
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
I S + DGKS+ +G++ F N ++A +A L + K + +KS R +
Sbjct: 122 IISCKIPLT-DGKSRGYGYIQFRNPENAEKAKLELADASINGKPIKIDNYNRKSRRNPD- 179
Query: 289 KHQFEQNMKEAADKFQGANLYIKNL--DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
+ F N+YIK L D DE L+++F PFG I + + +D +G S+
Sbjct: 180 ------------EDF--TNVYIKPLPVDQVKTDEDLRKIFEPFGEIQNPSLKKDENGNSK 225
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
G GF F E+A +A+ +NG+ + L V
Sbjct: 226 GFGFCNFKLHEDAVKAVEGLNGQEMFGVTLQV 257
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYV +VTD + + F++ G++ ++ R T+ S G+G+V + + ++A A+EM
Sbjct: 289 NLYVKSFSKDVTDKEFQEYFSKFGEIELFKIERVPETKESKGFGFVLYKSKEDAQNAIEM 348
Query: 85 LNFTPLNG--------------KPIRVMYSHRDPSLRKSGAGNI 114
L+G + ++V +H PS + AGN+
Sbjct: 349 AMLERLHGDLPYVGFFQTKAAHERVKVKNTHPRPSAVPAIAGNL 392
>gi|281340677|gb|EFB16261.1| hypothetical protein PANDA_006204 [Ailuropoda melanoleuca]
Length = 196
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/196 (54%), Positives = 146/196 (74%), Gaps = 3/196 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +A +AL+
Sbjct: 2 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + GKPIR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FSAFG ILS KV
Sbjct: 62 TMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NK-SK 201
+D G S+GY FV F N+ +A +AIE++NG LL D +++VG F +++R+ E+ NK ++
Sbjct: 122 MSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKVNE 180
Query: 202 FTNVYVKNLSESTTEE 217
FTNVYVKN + +E
Sbjct: 181 FTNVYVKNFGDDMDDE 196
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 112/210 (53%), Gaps = 16/210 (7%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FSA G +LS ++ DL +S GY +V F AQKA++
Sbjct: 2 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + KS NV++KNL +S + L + F +G I
Sbjct: 62 TMNFDMIKGKPIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G S+ + FV+F+N + A RA+E +NG D +VG+ + + +RE EL++
Sbjct: 118 SSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 176
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ + N+Y+KN D +DDE
Sbjct: 177 KVN----------EFTNVYVKNFGDDMDDE 196
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 99/193 (51%), Gaps = 22/193 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVE 261
++YV +LS TE+ L K F G + S + RD +S + +VNF DA +A++
Sbjct: 2 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 61
Query: 262 ALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
+N FD GK + S+R+ L+ K N++IKNLD SID+
Sbjct: 62 TMN---FD---MIKGKPIRLMWSQRDAYLR------------KSGIGNVFIKNLDKSIDN 103
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L + FS FG I S KVM D G SRG FV F A RA+ EMNG ++ L+V
Sbjct: 104 KTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVG 162
Query: 380 LAQRKEDRRARLQ 392
+ ++DR A LQ
Sbjct: 163 RFKNRKDREAELQ 175
>gi|341883809|gb|EGT39744.1| hypothetical protein CAEBREN_05859 [Caenorhabditis brenneri]
Length = 467
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/227 (54%), Positives = 158/227 (69%), Gaps = 5/227 (2%)
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
MLL K+V+VG F + +R+ E+ ++ K+TNVYVKN + +E L+K F +YGTITS
Sbjct: 1 MLLAGKKVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSC 60
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKH 290
VM DGKSK FGFV F ++A AV+ALN + D + +V +AQKKSER ELK
Sbjct: 61 DVMTS-DGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKK 119
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ EQ+ E K+QG NLY+KNLD+S+DDE LK+ F FG+ITS KVM D +G S+G GF
Sbjct: 120 KHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGF 179
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
V F PEEA+ A+ EMN KMV SKPLYVALAQRKEDRRA+L +Q
Sbjct: 180 VCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQ 226
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 111/198 (56%), Gaps = 15/198 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KN + ++L F+ +G I SC V T +G+SKG+GFV F E A+ A++ L
Sbjct: 32 NVYVKNFGDHYNKESLEKLFAKYGTITSCDVMTS-DGKSKGFGFVAFAEPEEAEAAVQAL 90
Query: 173 NGMLL--NDKQVYVGHFLRKQERDTEINKS------------KFTNVYVKNLSESTTEED 218
N + +D +++V +K ER E+ K + N+YVKNL ES +E
Sbjct: 91 NDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEA 150
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L+K F +G ITSA VM D +G+SK FGFV FE ++A AV +N K K YV A
Sbjct: 151 LKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALA 210
Query: 279 QKKSERELELKHQFEQNM 296
Q+K +R +L Q+ Q +
Sbjct: 211 QRKEDRRAQLASQYMQRL 228
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 20/192 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV + + L LF + G + S V S +S G+G+V F+ +EA A++
Sbjct: 31 TNVYVKNFGDHYNKESLEKLFAKYGTITSCDVM--TSDGKSKGFGFVAFAEPEEAEAAVQ 88
Query: 84 MLNFTPLNGKPIRVMY------------------SHRDPSLRKSGAGNIFIKNLDKAIDH 125
LN +P+ G +++ H+ ++K N+++KNLD+++D
Sbjct: 89 ALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDD 148
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
+AL F +FGNI S KV TD NG+SKG+GFV F+ E A A+ ++N ++ K +YV
Sbjct: 149 EALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVA 208
Query: 186 HFLRKQERDTEI 197
RK++R ++
Sbjct: 209 LAQRKEDRRAQL 220
>gi|402585898|gb|EJW79837.1| Poly(A) binding protein [Wuchereria bancrofti]
Length = 175
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 99/161 (61%), Positives = 122/161 (75%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
G + SLYVGDL +VT++ L++ F+ G V+S+RVCRD TRRSLGY YVN
Sbjct: 6 TAGAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVN 65
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
F +A RAL+ +NF + GKPIR+M+S RDPS+R+SGAGNIFIKNLDK+ID+KA++DT
Sbjct: 66 FQQPADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDT 125
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
FS FGNILSCKVA D SKGYGFV F+ EESAQKAIEK+
Sbjct: 126 FSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKV 166
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 17/161 (10%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G + S V RD +S + +VNF+ DA RA++
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N K + +Q+ + +M+ + N++IKNLD SID++ +
Sbjct: 79 MNFDMMYGKPIRIMWSQR------------DPSMRRSG----AGNIFIKNLDKSIDNKAI 122
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
FS FG+I SCKV D S+G GFV F T E A +A+
Sbjct: 123 YDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAI 163
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 81/151 (53%), Gaps = 5/151 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L + FS+ G +LS +V D + +S GY +V F A++A++
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + +S N+++KNL +S + + +F +G I
Sbjct: 78 TMNFDMMYGKPIRI----MWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNIL 133
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
S V D + SK +GFV+FE + A +A+E
Sbjct: 134 SCKVANDEESNSKGYGFVHFETEESAQKAIE 164
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEA 359
+ A+LY+ +L + + L + FS G + S +V RD I+R G +V F P +A
Sbjct: 15 YPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRD--AITRRSLGYAYVNFQQPADA 72
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRR 388
RAL MN M+ KP+ + +QR R
Sbjct: 73 ERALDTMNFDMMYGKPIRIMWSQRDPSMR 101
>gi|160331003|ref|XP_001712209.1| pab1 [Hemiselmis andersenii]
gi|159765656|gb|ABW97884.1| pab1 [Hemiselmis andersenii]
Length = 502
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/281 (42%), Positives = 179/281 (63%), Gaps = 6/281 (2%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N N +T LYVGDL N+ + + +F +G + SV++ RD+S+ +GY +V F N +
Sbjct: 33 NKNSDQSTCLYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFK 92
Query: 77 EAARALEMLN--FTPLN-GKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
+A RAL LN F P KP+R+M+ +D L KSG GNIFIKNL D K+L F
Sbjct: 93 DAERALTKLNYYFDPEKMKKPLRLMWYQKDKFLLKSGGGNIFIKNLPLFFDSKSLEKMFL 152
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL-RKQE 192
FG ILSCKVA D NG S GYGFV F++E++++ AIEK NG+++ +K+++VG FL RK
Sbjct: 153 DFGKILSCKVALDENGTSLGYGFVHFEDEKASKIAIEKTNGLIIGEKKIFVGPFLSRKDR 212
Query: 193 RDTEINKSKFTNVYVKNLS-ESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
++ + K+ FTN+Y+KN+S E+ E ++ F +G ITS + ++ + +K F FVN+E
Sbjct: 213 KNFGMTKTGFTNIYIKNISPENCNETFIKDLFDIFGKITSIYIPKNNNF-TKGFAFVNYE 271
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
++A A+ +N KK + YVGKA+ K ER+ L+ +F
Sbjct: 272 LPEEAEDAIFRMNKKKIKNLTLYVGKAETKIERQRHLQKKF 312
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 147/286 (51%), Gaps = 15/286 (5%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
+++ +L + + + F G + S K+ D++ G+ GY FV+F+N + A++A+ KL
Sbjct: 42 LYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFKDAERALTKL 101
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N +K + Q +D + KS N+++KNL + L+K F ++G I S
Sbjct: 102 NYYFDPEKMKKPLRLMWYQ-KDKFLLKSGGGNIFIKNLPLFFDSKSLEKMFLDFGKILSC 160
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V D +G S +GFV+FE+ + A+E NG +K+ +VG + +R
Sbjct: 161 KVALDENGTSLGYGFVHFEDEKASKIAIEKTNGLIIGEKKIFVGPFLSRKDR-------- 212
Query: 293 EQNMKEAADKFQGANLYIKNLD-DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
+N F N+YIKN+ ++ ++ +K LF FG ITS + ++ + ++G FV
Sbjct: 213 -KNFGMTKTGF--TNIYIKNISPENCNETFIKDLFDIFGKITSIYIPKN-NNFTKGFAFV 268
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
+ PEEA A+ MN K + + LYV A+ K +R+ LQ L+
Sbjct: 269 NYELPEEAEDAIFRMNKKKIKNLTLYVGKAETKIERQRHLQKKFLE 314
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 100/202 (49%), Gaps = 24/202 (11%)
Query: 194 DTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNF 250
+ EINK+ + T +YV +L + EED++K F G + S + RD G+ + FV F
Sbjct: 29 ENEINKNSDQSTCLYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEF 88
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ----GA 306
EN DA RA+ LN +Y + K L M DKF G
Sbjct: 89 ENFKDAERALTKLN--------YYFDPEKMKKPLRL---------MWYQKDKFLLKSGGG 131
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N++IKNL D + L+++F FG I SCKV D +G S G GFV F + + A+ +
Sbjct: 132 NIFIKNLPLFFDSKSLEKMFLDFGKILSCKVALDENGTSLGYGFVHFEDEKASKIAIEKT 191
Query: 367 NGKMVVSKPLYVALAQRKEDRR 388
NG ++ K ++V ++DR+
Sbjct: 192 NGLIIGEKKIFVGPFLSRKDRK 213
>gi|348677381|gb|EGZ17198.1| hypothetical protein PHYSODRAFT_354553 [Phytophthora sojae]
Length = 317
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/214 (53%), Positives = 154/214 (71%), Gaps = 11/214 (5%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGF 156
M+S RDPSLRKSG GNIF+KNLD +ID+KAL+DTFS FGNILSCKVA D G SKGYG+
Sbjct: 1 MWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGY 60
Query: 157 VQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTE 216
V ++ E+A +AI K+NGML+ +V+VGHF ++Q+R + +TN YVKN+ T+
Sbjct: 61 VHYETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDRP---DADDWTNCYVKNIPTQWTD 117
Query: 217 EDLQKSFGEYGTITSAVVMRDGDG--KSKCFGFVNFENSDDAARAVEALNGKKFD----- 269
DL K F +G + SAVVM+D +++ FGFVN+E+S+ A +AV+ALNGK +
Sbjct: 118 ADLLKEFEPFGKVLSAVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGEGV 177
Query: 270 DKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
+ E YVGKAQK+SERE EL+++FEQ E +K+
Sbjct: 178 ETELYVGKAQKRSERERELRNKFEQLKMERINKY 211
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 100/209 (47%), Gaps = 23/209 (11%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNF 250
+RD + KS N++VKNL S + L +F +G I S V D G SK +G+V++
Sbjct: 4 QRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYVHY 63
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
E ++ A A+ +NG E +VG QK+ +R D N Y+
Sbjct: 64 ETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDR---------------PDADDWTNCYV 108
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI--SRGSGFVAFSTPEEASRALLEMNG 368
KN+ D L + F PFG + S VM+D + +RG GFV + E A +A+ +NG
Sbjct: 109 KNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNG 168
Query: 369 KMV-----VSKPLYVALAQRKEDRRARLQ 392
K V LYV AQ++ +R L+
Sbjct: 169 KSYPAGEGVETELYVGKAQKRSERERELR 197
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 106/201 (52%), Gaps = 9/201 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD F+ G ++S +V D +T S GYGYV++ A+ A A
Sbjct: 13 GVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYVHYETAEAATEA 72
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
+ +N + G + V + R N ++KN+ L F FG +LS
Sbjct: 73 IAKINGMLIAGTEVFVGHFQKRQDRPDADDWTNCYVKNIPTQWTDADLLKEFEPFGKVLS 132
Query: 141 CKVATDLNG--QSKGYGFVQFDNEESAQKAIEKLNGMLLN-----DKQVYVGHFLRKQER 193
V D Q++G+GFV +++ E+A KA++ LNG + ++YVG ++ ER
Sbjct: 133 AVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGEGVETELYVGKAQKRSER 192
Query: 194 DTEINKSKFTNVYVKNLSEST 214
+ E+ ++KF + ++ +++ T
Sbjct: 193 EREL-RNKFEQLKMERINKYT 212
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/198 (57%), Positives = 145/198 (73%), Gaps = 4/198 (2%)
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVK+ + +E L++ F +YGTITS VM DGK + FGFV FEN + A AV+
Sbjct: 6 FTNVYVKDFGDELNDETLKEMFEKYGTITSHRVMIK-DGKGRGFGFVAFENPESAEHAVQ 64
Query: 262 ALNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LNGK+ + K YVG+AQKK+ER++ELK +FEQ E ++QG NLY+KNLDDSIDDE
Sbjct: 65 ELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDE 124
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST-PEEASRALLEMNGKMVVSKPLYVA 379
+L++ FSPFG+ITS KVM + G S+G GFV FS EEA++A+ EMNG++V SKPLYVA
Sbjct: 125 RLRKEFSPFGTITSAKVMLE-EGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVA 183
Query: 380 LAQRKEDRRARLQVCLLQ 397
LAQR EDR+A L +Q
Sbjct: 184 LAQRTEDRKAHLASQYMQ 201
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 132/234 (56%), Gaps = 36/234 (15%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++K+ ++ + L + F +G I S +V +G+ +G+GFV F+N ESA+ A+++L
Sbjct: 8 NVYVKDFGDELNDETLKEMFEKYGTITSHRVMIK-DGKGRGFGFVAFENPESAEHAVQEL 66
Query: 173 NGMLLND-KQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEED 218
NG L + K +YVG +K ER E+ K +F N+YVKNL +S +E
Sbjct: 67 NGKELGEGKILYVGRAQKKNERQMEL-KRRFEQLKMERLTRYQGVNLYVKNLDDSIDDER 125
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF-ENSDDAARAVEALNGKKFDDKEWYVGK 277
L+K F +GTITSA VM + +G+SK FGFV F +++++A +AV +NG+ K YV
Sbjct: 126 LRKEFSPFGTITSAKVMLE-EGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVAL 184
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
AQ+ +R+ L Q+ Q M AN+ ++++ Q+F P G+
Sbjct: 185 AQRTEDRKAHLASQYMQRM---------ANMRMQHMG---------QIFQPGGN 220
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 21/192 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV D + D L ++F + G + S RV + + G+G+V F N + A A++
Sbjct: 7 TNVYVKDFGDELNDETLKEMFEKYGTITSHRVM--IKDGKGRGFGFVAFENPESAEHAVQ 64
Query: 84 MLNFTPL-NGKPIRVMYSHRD----------------PSLRKSGAGNIFIKNLDKAIDHK 126
LN L GK + V + + L + N+++KNLD +ID +
Sbjct: 65 ELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDE 124
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNE-ESAQKAIEKLNGMLLNDKQVYVG 185
L FS FG I S KV + G+SKG+GFV F E A KA+ ++NG ++ K +YV
Sbjct: 125 RLRKEFSPFGTITSAKVMLE-EGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVA 183
Query: 186 HFLRKQERDTEI 197
R ++R +
Sbjct: 184 LAQRTEDRKAHL 195
>gi|147864210|emb|CAN80948.1| hypothetical protein VITISV_016699 [Vitis vinifera]
Length = 183
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 101/138 (73%), Positives = 114/138 (82%), Gaps = 3/138 (2%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
NGG NQ +TSLYVG LE+NVTDS L+DLF Q+G VVSV++C DLSTRRSL YG VN
Sbjct: 9 NGG---ENQLXSTSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVN 65
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
N Q+ ARAL++LNFT LNGKP R+MYSH DPS+RKSG GNIFIKNLDK +DHKALHDT
Sbjct: 66 HGNPQDTARALDVLNFTLLNGKPTRIMYSHCDPSVRKSGTGNIFIKNLDKRVDHKALHDT 125
Query: 132 FSAFGNILSCKVATDLNG 149
FSAFGNILSCKVA D +G
Sbjct: 126 FSAFGNILSCKVAADASG 143
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDA 256
N+ T++YV L + T+ L FG+ G + S + D +S +G VN N D
Sbjct: 13 NQLXSTSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDT 72
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
ARA++ LN + K + + + K N++IKNLD
Sbjct: 73 ARALDVLNFTLLNGKPTRI----------------MYSHCDPSVRKSGTGNIFIKNLDKR 116
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
+D + L FS FG+I SCKV D SG R
Sbjct: 117 VDHKALHDTFSAFGNILSCKVAADASGSYR 146
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEK 171
++++ L+ + L D F G ++S ++ DL+ + S YG V N + +A++
Sbjct: 19 SLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTARALDV 78
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN LLN K + + D + KS N+++KNL + + L +F +G I S
Sbjct: 79 LNFTLLNGKPTRIMY----SHCDPSVRKSGTGNIFIKNLDKRVDHKALHDTFSAFGNILS 134
Query: 232 AVVMRDGDG 240
V D G
Sbjct: 135 CKVAADASG 143
>gi|300707142|ref|XP_002995792.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
gi|239605007|gb|EEQ82121.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
Length = 508
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 214/383 (55%), Gaps = 26/383 (6%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVGDL + +S L+ +F+ +G+VV +++ + + S + +V F+N A RA++
Sbjct: 13 TIYVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLSS--FAFVTFANGDAADRAIKE 70
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N LN K IRV+ + S R+ N+ +KNL + ++ L+DTFS FG I+S K+A
Sbjct: 71 YNNFRLNKKNIRVLPCMDEKSKREDA--NLIVKNLPSSFTNENLYDTFSVFGTIISAKIA 128
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF----LRKQERDTEINK- 199
T +G+ K YGFVQFD ++SA+ AI+ +G L++K + V F RKQE NK
Sbjct: 129 TYADGKPKNYGFVQFDKKKSAKMAIKHCDGGKLDNKIIQVEIFDKEKRRKQEEQALENKP 188
Query: 200 ----SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV-MRDGDGKSKCFGFVNFENSD 254
KFTN ++KN ES TE+DL+ +YG ITS ++DG SK F F NFE+ +
Sbjct: 189 VKLEPKFTNCFIKNFPESFTEKDLESLLNKYGNITSIYFPLKDGTFVSKGFAFANFESHE 248
Query: 255 DAARAVEALNGKK---FDDKEW-------YVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
A A++ L+GK+ F++ + Y+ KAQKK ERE LK FEQ E +
Sbjct: 249 SAQNAIQELHGKQIFPFEENSYTTKLEPFYIQKAQKKEEREEYLKRSFEQLSLEGQN--I 306
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
NLYI N+ I+ + + ++FS FGSI S + D R +V +ST +EA A+
Sbjct: 307 KRNLYITNIPAFIEKDDIFEIFSEFGSIVSFSIGIDAVNEQRKYAYVCYSTSDEAFIAIE 366
Query: 365 EMNGKMVVSKPLYVALAQRKEDR 387
+ N + + L V + K +R
Sbjct: 367 KGNELFIDNNKLNVTYFKNKAER 389
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 146/300 (48%), Gaps = 25/300 (8%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 171
I++ +L L FS+ G ++ K+ + S + FV F N ++A +AI++
Sbjct: 12 ATIYVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLS-SFAFVTFANGDAADRAIKE 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
N LN K + V + ++ + + N+ VKNL S T E+L +F +GTI S
Sbjct: 71 YNNFRLNKKNIRVLPCMDEKSKRED------ANLIVKNLPSSFTNENLYDTFSVFGTIIS 124
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
A + DGK K +GFV F+ A A++ +G K D+K V K+ R+ E
Sbjct: 125 AKIATYADGKPKNYGFVQFDKKKSAKMAIKHCDGGKLDNKIIQVEIFDKEKRRKQE---- 180
Query: 292 FEQNMKEAADKFQG--ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV-MRDPSGISRGS 348
EQ ++ K + N +IKN +S ++ L+ L + +G+ITS ++D + +S+G
Sbjct: 181 -EQALENKPVKLEPKFTNCFIKNFPESFTEKDLESLLNKYGNITSIYFPLKDGTFVSKGF 239
Query: 349 GFVAFSTPEEASRALLEMNGKMVVS----------KPLYVALAQRKEDRRARLQVCLLQC 398
F F + E A A+ E++GK + +P Y+ AQ+KE+R L+ Q
Sbjct: 240 AFANFESHESAQNAIQELHGKQIFPFEENSYTTKLEPFYIQKAQKKEEREEYLKRSFEQL 299
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 136/298 (45%), Gaps = 37/298 (12%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L V +L ++ T+ LYD F+ G ++S ++ + + YG+V F + A A++
Sbjct: 97 NLIVKNLPSSFTNENLYDTFSVFGTIISAKIAT-YADGKPKNYGFVQFDKKKSAKMAIKH 155
Query: 85 LNFTPLNGKPIRVMYSHRD-------------PSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ L+ K I+V ++ P + N FIKN ++ K L
Sbjct: 156 CDGGKLDNKIIQVEIFDKEKRRKQEEQALENKPVKLEPKFTNCFIKNFPESFTEKDLESL 215
Query: 132 FSAFGNILSCKVA-TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND----------K 180
+ +GNI S D SKG+ F F++ ESAQ AI++L+G + +
Sbjct: 216 LNKYGNITSIYFPLKDGTFVSKGFAFANFESHESAQNAIQELHGKQIFPFEENSYTTKLE 275
Query: 181 QVYVGHFLRKQERDTEINKSKFT-----------NVYVKNLSESTTEEDLQKSFGEYGTI 229
Y+ +K+ER+ + +S F N+Y+ N+ ++D+ + F E+G+I
Sbjct: 276 PFYIQKAQKKEEREEYLKRS-FEQLSLEGQNIKRNLYITNIPAFIEKDDIFEIFSEFGSI 334
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S + D + + + +V + SD+A A+E N D+ + V + K+ER E
Sbjct: 335 VSFSIGIDAVNEQRKYAYVCYSTSDEAFIAIEKGNELFIDNNKLNVTYFKNKAERTKE 392
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 25/206 (12%)
Query: 188 LRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
+ + E++ EI F +YV +LS T E DL + F G + + + + S F F
Sbjct: 1 MDQNEKNNEI----FATIYVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLS-SFAF 55
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQ-KKSERELELKHQFEQNMKEAADKFQGA 306
V F N D A RA++ N + + K V +KS+RE A
Sbjct: 56 VTFANGDAADRAIKEYNNFRLNKKNIRVLPCMDEKSKRE-------------------DA 96
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
NL +KNL S +E L FS FG+I S K+ G + GFV F + A A+
Sbjct: 97 NLIVKNLPSSFTNENLYDTFSVFGTIISAKIATYADGKPKNYGFVQFDKKKSAKMAIKHC 156
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQ 392
+G + +K + V + +++ R+ Q
Sbjct: 157 DGGKLDNKIIQVEIFDKEKRRKQEEQ 182
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 24/197 (12%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+ ++ + + T+ L L N+ G + S+ T S G+ + NF + + A A++
Sbjct: 196 TNCFIKNFPESFTEKDLESLLNKYGNITSIYFPLKDGTFVSKGFAFANFESHESAQNAIQ 255
Query: 84 MLN---FTPLNG-------KPIRVMYSH----RDPSLRKSGAG----------NIFIKNL 119
L+ P +P + + R+ L++S N++I N+
Sbjct: 256 ELHGKQIFPFEENSYTTKLEPFYIQKAQKKEEREEYLKRSFEQLSLEGQNIKRNLYITNI 315
Query: 120 DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
I+ + + FS FG+I+S + D + + Y +V + + A AIEK N + +++
Sbjct: 316 PAFIEKDDIFEIFSEFGSIVSFSIGIDAVNEQRKYAYVCYSTSDEAFIAIEKGNELFIDN 375
Query: 180 KQVYVGHFLRKQERDTE 196
++ V +F K ER E
Sbjct: 376 NKLNVTYFKNKAERTKE 392
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 107/180 (59%), Positives = 135/180 (75%), Gaps = 1/180 (0%)
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L++ F E+G ITSA VM D +GKSK FGFV F++S+ A AV+ALNGK F D++ YVG+A
Sbjct: 10 LREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRA 69
Query: 279 QKKSERELELKHQFEQNMKEAADKF-QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
QKK+ER EL+ FE+ E + ++ QG NLY+KNLDDSIDD +LKQ F FG+ITS KV
Sbjct: 70 QKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAKV 129
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
M D + S+G GFV FS PEEA++A+ EMNGK+ SKPLYVALAQRKEDR+A L +Q
Sbjct: 130 MTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQ 189
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 13/180 (7%)
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L + F FG I S KV D NG+SKG+GFV F + E+A+ A++ LNG + D+Q+YVG
Sbjct: 10 LREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRA 69
Query: 188 LRKQERDTEINK----------SKFT---NVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
+K ER E+ S++T N+YVKNL +S + L++ F +G ITSA V
Sbjct: 70 QKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAKV 129
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
M D + +SK FGFV F N ++A +AV +NGK K YV AQ+K +R+ L Q+ Q
Sbjct: 130 MTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQ 189
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 18/176 (10%)
Query: 39 QLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV- 97
+L ++F + G++ S +V D +S G+G+V F +++ A A++ LN + + V
Sbjct: 9 KLREMFLEFGEITSAKVMID-ENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVG 67
Query: 98 -----------MYSH-----RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ SH + S R + N+++KNLD +ID L F FGNI S
Sbjct: 68 RAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSA 127
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
KV TD N +SKG+GFV F N E A KA+ ++NG + K +YV RK++R +
Sbjct: 128 KVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHL 183
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+++F FG ITS KVM D +G S+G GFV F E A A+ +NGKM + LYV
Sbjct: 9 KLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGR 68
Query: 381 AQRKEDR 387
AQ+K +R
Sbjct: 69 AQKKNER 75
>gi|402697293|gb|AFQ90834.1| polyA-binding protein cytoplasmic 1, partial [Oscaecilia
ochrocephala]
Length = 177
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/178 (58%), Positives = 136/178 (76%), Gaps = 3/178 (1%)
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 177 LNDKQVYVGHFLRKQERDTEINK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LND++V+VG F ++ER+ E+ +FTNVY+KN E +E L++ FG+YG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEVFGKYGPALSVKV 119
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
M D GKSK FGFV+FE +DA +AV+ +NGK+ + K YVG+AQKK ER+ ELK +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVERQTELKRKF 177
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 112/185 (60%), Gaps = 11/185 (5%)
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KNL +S + L +F +G I S V+ D +G SK +GFV FE + A RA+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+D++ +VG+ + + ERE EL + A +F N+YIKN + +DDE+LK++F
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKEVFG 109
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
+G S KVM D SG S+G GFV+F E+A +A+ MNGK + K +YV AQ+K +R
Sbjct: 110 KYGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVER 169
Query: 388 RARLQ 392
+ L+
Sbjct: 170 QTELK 174
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 104/179 (58%), Gaps = 9/179 (5%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89
+L+ ++ + LYD F+ G ++S +V D + S GYG+V F + A RA+E +N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 90 LNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + + V + R + GA N++IKN + +D + L + F +G LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEVFGKYGPALSVKV 119
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
TD +G+SKG+GFV F+ E AQKA++ +NG LN K +YVG +K ER TE+ K KF
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVERQTEL-KRKF 177
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/178 (57%), Positives = 137/178 (76%), Gaps = 3/178 (1%)
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 177 LNDKQVYVGHFLRKQERDTEINK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LND++V+VG F ++ER+ E+ +FTNVY+KN E +E L++ FG++G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKV 119
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
M D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 177
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 114/185 (61%), Gaps = 11/185 (5%)
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KNL +S + L +F +G I S V+ D +G SK +GFV+FE + A RA+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+D++ +VG+ + + ERE EL + A +F N+YIKN + +DDE+LK+LF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFG 109
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
FG S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R
Sbjct: 110 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 388 RARLQ 392
+ L+
Sbjct: 170 QTELK 174
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 107/179 (59%), Gaps = 9/179 (5%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89
+L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA+E +N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 90 LNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + + V + R + GA N++IKN + +D + L + F FG LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKV 119
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE+ K KF
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL-KRKF 177
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF + G +SV+V D S +S G+G+V+F
Sbjct: 81 GARAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG-KSKGFGFVSFER 137
Query: 75 AQEAARALEMLNFTPLNGKPIRV 97
++A +A++ +N LNGK I V
Sbjct: 138 HEDAQKAVDEMNGKELNGKQIYV 160
>gi|123407356|ref|XP_001302991.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884332|gb|EAX90061.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 477
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 203/376 (53%), Gaps = 20/376 (5%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGDL +V ++ + ++F G S V + +V F + + A RA+ +
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 86 NFTPLNGKPIRVMYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N+T L+G PIR+++S DP + K+ G +FI+ LD+ I+ LHD FS FG I+SCK
Sbjct: 68 NYTKLDGVPIRILWS--DPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSCK 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ NG+S+GYGF+ F E+ A++A L +N K + + + + ++ E F
Sbjct: 126 IPL-TNGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEFYQKPTRKNPE---ETF 181
Query: 203 TNVYVKNLSEST--TEEDLQKSFGEYGTIT-----SAVVMRDGDGKSKCFGFVNFENSDD 255
TNV++K L T++DL F E+G + + R DG S FGF NF++ +D
Sbjct: 182 TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSSCEFGFCNFKHHED 241
Query: 256 AARAVEALNGKKFDDKE--WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
A +AV+ALNGK+ + + + +AQ K+ER+ L Q + + ++ +G NLY+KN
Sbjct: 242 AVKAVDALNGKQHESGKVTFSCCRAQTKAERQAFLAKQSAEFRRRLNEETRGRNLYVKNF 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGI--SRGSGFVAFSTPEEASRALLEMNGKMV 371
D S+ DE+ K+ F FG + C + R+ S+G GFV F T E A AL +
Sbjct: 302 DQSVTDEQFKEYFEQFGEVEKCSIRREAQEPHESKGFGFVLFKTKESAQNALENAVITPL 361
Query: 372 VSKPLYVALAQRKEDR 387
K Y+ L + KE+R
Sbjct: 362 NGKTPYIGLFKMKEER 377
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 142/288 (49%), Gaps = 28/288 (9%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L++ L+ N+ SQL+D F+ G++VS ++ L+ +S GYG++ F +A RA
Sbjct: 96 ALFIRGLDENIEVSQLHDAFSNFGEIVSCKI--PLTNGKSRGYGFITFYKEDDAKRAKTD 153
Query: 85 LNFTPLNGKPIRVMYSHRDPSLR--KSGAGNIFIKNLDKAI--DHKALHDTFSAFGNILS 140
L +NGKPI++ + ++ P+ + + N+FIK L I L + F FG+ +
Sbjct: 154 LADASINGKPIQIEF-YQKPTRKNPEETFTNVFIKPLPADIFKTDDDLANFFKEFGDFVV 212
Query: 141 CKVATDL-----NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG---------- 185
A +G S +GF F + E A KA++ LNG +V
Sbjct: 213 TGKANPAIKRKEDGSSCEFGFCNFKHHEDAVKAVDALNGKQHESGKVTFSCCRAQTKAER 272
Query: 186 -HFLRKQ--ERDTEINK-SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG--D 239
FL KQ E +N+ ++ N+YVKN +S T+E ++ F ++G + + R+
Sbjct: 273 QAFLAKQSAEFRRRLNEETRGRNLYVKNFDQSVTDEQFKEYFEQFGEVEKCSIRREAQEP 332
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
+SK FGFV F+ + A A+E + K Y+G + K ERE E
Sbjct: 333 HESKGFGFVLFKTKESAQNALENAVITPLNGKTPYIGLFKMKEERERE 380
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 36/204 (17%)
Query: 24 TSLYVGDLEANV--TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG----YGYVNFSNAQE 77
T++++ L A++ TD L + F + G V R+ G +G+ NF + ++
Sbjct: 182 TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSSCEFGFCNFKHHED 241
Query: 78 AARALEMLNFTPLNGKPI---RVMYS--------HRDPSLRKSGAG------------NI 114
A +A++ LN GK +V +S R L K A N+
Sbjct: 242 AVKAVDALN-----GKQHESGKVTFSCCRAQTKAERQAFLAKQSAEFRRRLNEETRGRNL 296
Query: 115 FIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN--GQSKGYGFVQFDNEESAQKAIEKL 172
++KN D+++ + + F FG + C + + +SKG+GFV F +ESAQ A+E
Sbjct: 297 YVKNFDQSVTDEQFKEYFEQFGEVEKCSIRREAQEPHESKGFGFVLFKTKESAQNALENA 356
Query: 173 NGMLLNDKQVYVGHFLRKQERDTE 196
LN K Y+G F K+ER+ E
Sbjct: 357 VITPLNGKTPYIGLFKMKEERERE 380
>gi|401827787|ref|XP_003888186.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999386|gb|AFM99205.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 500
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 129/375 (34%), Positives = 203/375 (54%), Gaps = 18/375 (4%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ ++YVGDL DS L+ +F+ +G+++++++ + + S + +V F N ++A +A+
Sbjct: 13 SLTIYVGDLPPKTIDSDLFRIFSNVGKILNIKLIKRGESAPS--FAFVTFENEEDAEKAV 70
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
L+ + IRVM P GNIF+KNL ++ K L D FS FG I+SCK
Sbjct: 71 REYKHYELHDRQIRVMRKDERPP----ETGNIFVKNLPESFTSKDLDDAFSMFGEIVSCK 126
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIE---KLNGMLLNDKQVYVGHFLRKQER-DTEIN 198
VAT G+SKGYGFVQF + SA+K I+ LNG++L ++ V + + ++ +++
Sbjct: 127 VATTPQGKSKGYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVELYNPEMKKGESKKV 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+ FTN ++KN S E++L +YG +TS DGK K F F NFE + A
Sbjct: 187 STMFTNCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKGFAFANFETHESALN 246
Query: 259 AVEALNGK-KFDD-----KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
A+ L+G FD+ + +Y+ K QK+ ER L+ FEQ + + NLYI N
Sbjct: 247 AINGLHGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQLSMQGQN--YKKNLYITN 304
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
+ + E+L +F FGSITS V D + + ++ +STPEEAS A+ N +
Sbjct: 305 IPEGFGAEELSNIFKEFGSITSMSVGVDGANNQKQYAYICYSTPEEASIAVERGNEIYLD 364
Query: 373 SKPLYVALAQRKEDR 387
L VA + K +R
Sbjct: 365 GNRLQVAYFKNKLER 379
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 27/196 (13%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR---RSLGYGYVNFSNAQEAAR 80
T+ ++ + +V + +L DL + G+V S+ C T+ + G+ + NF + A
Sbjct: 191 TNCFIKNFPGSVGEKELLDLLEKYGKVTSL--C--FPTKDDGKPKGFAFANFETHESALN 246
Query: 81 ALEMLNFT-PLN-----GKPIRVMYSH----RDPSLRK-----SGAG-----NIFIKNLD 120
A+ L+ T P + G+P + R LRK S G N++I N+
Sbjct: 247 AINGLHGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQLSMQGQNYKKNLYITNIP 306
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
+ + L + F FG+I S V D K Y ++ + E A A+E+ N + L+
Sbjct: 307 EGFGAEELSNIFKEFGSITSMSVGVDGANNQKQYAYICYSTPEEASIAVERGNEIYLDGN 366
Query: 181 QVYVGHFLRKQERDTE 196
++ V +F K ER E
Sbjct: 367 RLQVAYFKNKLERMKE 382
>gi|340546031|gb|AEK51814.1| cytoplasmic poly(A) binding protein 1 [Heteronotia binoei]
Length = 177
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/178 (57%), Positives = 135/178 (75%), Gaps = 3/178 (1%)
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 177 LNDKQVYVGHFLRKQERDTEINK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LND++V+VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 119
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
M D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ E K +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEXKRKF 177
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 111/182 (60%), Gaps = 11/182 (6%)
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KNL +S + L +F +G I S V+ D +G SK +GFV+FE + A RA+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+D++ +VG+ + + ERE EL + A +F N+YIKN + +DDE+LK LF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFG 109
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
FG S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R
Sbjct: 110 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 388 RA 389
+
Sbjct: 170 QT 171
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 106/179 (59%), Gaps = 9/179 (5%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89
+L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA+E +N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 90 LNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + + V + R + GA N++IKN + +D + L D F FG LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 119
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE K KF
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE-XKRKF 177
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNLD SID++ L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 371 VVSKPLYVALAQRKEDRRARL 391
+ + ++V + +++R A L
Sbjct: 60 LNDRKVFVGRFKSRKEREAEL 80
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S +S G+G+V+F
Sbjct: 81 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFER 137
Query: 75 AQEAARALEMLNFTPLNGKPIRV 97
++A +A++ +N LNGK I V
Sbjct: 138 HEDAQKAVDEMNGKELNGKQIYV 160
>gi|387594015|gb|EIJ89039.1| hypothetical protein NEQG_00858 [Nematocida parisii ERTm3]
gi|387595783|gb|EIJ93406.1| hypothetical protein NEPG_01748 [Nematocida parisii ERTm1]
Length = 512
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 206/383 (53%), Gaps = 29/383 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR-DLSTRRSLGYGYVNFSNAQEAARALE 83
++YVGD+ T+S+L+ +F+++GQ+ ++ + R ++S + Y YV F + A+E
Sbjct: 20 TIYVGDIPMATTESELFQIFSKVGQIYTISILRKEVSIVKDKCYAYVTFFDESSVPIAIE 79
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
NF L+G IRVM +++ S+ + GNI IKNL K D++ L+DTF FG ILSCKV
Sbjct: 80 TFNFYSLHGSQIRVMPFNKE-SVVGNREGNIVIKNLPKETDNQTLYDTFIVFGPILSCKV 138
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINKSK 201
+ + G G++Q+ + + A+ AI+ +N ++LN K++ + K+E+ E
Sbjct: 139 VKNNLSECTGVGYIQYKDPKVAEVAIQMINKIVLNGKKLCATQCIPNDKREKKRENVAKI 198
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKN TEE+++ EYG +TS + R G+ + F F N++ + AA A+E
Sbjct: 199 FTNIYVKNFPAGITEEEIEAKLKEYGELTSFLAPRTDSGEMRGFAFANYQTHEMAAAAIE 258
Query: 262 ALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
AL+ K F + YV +A+ K+ER E+ F Q + + N+YI NL
Sbjct: 259 ALHDKPFPGYPEGTENLYVQRAKLKNERVEEMLEYFSQ----VPEHERRRNIYITNLPGE 314
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+++E + + FS +G I + K+ D +R G+V + E+A++A
Sbjct: 315 LNEEDVVKYFSKYGPIVTYKLGTDAKN-NRSYGYVFYQKAEDAAKA-------------- 359
Query: 377 YVALAQRKEDRRARLQVCLLQCR 399
V LA + E L V +C+
Sbjct: 360 -VELANKSEYCEQTLDVAFFKCK 381
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 136/287 (47%), Gaps = 30/287 (10%)
Query: 28 VGDLEANV--------TDSQ-LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
VG+ E N+ TD+Q LYD F G ++S +V ++ + G GY+ + + + A
Sbjct: 102 VGNREGNIVIKNLPKETDNQTLYDTFIVFGPILSCKVVKN-NLSECTGVGYIQYKDPKVA 160
Query: 79 ARALEMLNFTPLNGKPI---RVMYSHRDPSLRKSGA---GNIFIKNLDKAIDHKALHDTF 132
A++M+N LNGK + + + + + R++ A NI++KN I + +
Sbjct: 161 EVAIQMINKIVLNGKKLCATQCIPNDKREKKRENVAKIFTNIYVKNFPAGITEEEIEAKL 220
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN-----GMLLNDKQVYVGHF 187
+G + S +G+ +G+ F + E A AIE L+ G + +YV
Sbjct: 221 KEYGELTSFLAPRTDSGEMRGFAFANYQTHEMAAAAIEALHDKPFPGYPEGTENLYVQRA 280
Query: 188 LRKQERDTEI--------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
K ER E+ + N+Y+ NL EED+ K F +YG I + + D
Sbjct: 281 KLKNERVEEMLEYFSQVPEHERRRNIYITNLPGELNEEDVVKYFSKYGPIVTYKLGTDAK 340
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
++ +G+V ++ ++DAA+AVE N ++ ++ V + K REL
Sbjct: 341 N-NRSYGYVFYQKAEDAAKAVELANKSEYCEQTLDVAFFKCKKLREL 386
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 28/207 (13%)
Query: 189 RKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG--KSKCFG 246
+K++++ +I K +YV ++ +TTE +L + F + G I + ++R K KC+
Sbjct: 7 QKEKKEGQIGKQ--NTIYVGDIPMATTESELFQIFSKVGQIYTISILRKEVSIVKDKCYA 64
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS---ERELELKHQFEQNMKEAADKF 303
+V F + A+E N + V K+S RE
Sbjct: 65 YVTFFDESSVPIAIETFNFYSLHGSQIRVMPFNKESVVGNRE------------------ 106
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
N+ IKNL D++ L F FG I SCKV+++ G G++ + P+ A A
Sbjct: 107 --GNIVIKNLPKETDNQTLYDTFIVFGPILSCKVVKNNLSECTGVGYIQYKDPKVAEVA- 163
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRAR 390
++M K+V++ A D+R +
Sbjct: 164 IQMINKIVLNGKKLCATQCIPNDKREK 190
>gi|405963265|gb|EKC28854.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 172
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 94/159 (59%), Positives = 123/159 (77%), Gaps = 1/159 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVGDL +VT+ LY+ F+ G V+S+RVCR L TRRSLGY YV+F + ++A AL
Sbjct: 15 TSLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFKHLEDAETALN 74
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+N+ + G+PIR+ + RDPS RKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCK+
Sbjct: 75 TMNYDTIKGQPIRITWYQRDPSPRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKI 134
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
D +G +GYGFV F+ EESA AIE++NG +L+ K+V
Sbjct: 135 VCDEHG-FRGYGFVHFEKEESATIAIERVNGTMLHGKKV 172
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 18/173 (10%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVE 261
T++YV +L TE+ L + F G + S V R +S + +V+F++ +DA A+
Sbjct: 15 TSLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFKHLEDAETALN 74
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+N + + Q+ + K N++IKNLD SID++
Sbjct: 75 TMNYDTIKGQPIRITWYQRDP----------------SPRKSGVGNVFIKNLDKSIDNKA 118
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
L FS FG+I SCK++ D G RG GFV F E A+ A+ +NG M+ K
Sbjct: 119 LYDTFSAFGNILSCKIVCDEHGF-RGYGFVHFEKEESATIAIERVNGTMLHGK 170
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 6/176 (3%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGF 156
M+S P+ ++++ +L + L++ FS G +LS +V L +S GY +
Sbjct: 1 MFSLVFPAGPIHPMTSLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAY 60
Query: 157 VQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTE 216
V F + E A+ A+ +N + + + + + +RD KS NV++KNL +S
Sbjct: 61 VDFKHLEDAETALNTMNYDTIKGQPIRITWY----QRDPSPRKSGVGNVFIKNLDKSIDN 116
Query: 217 EDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
+ L +F +G I S ++ D G + +GFV+FE + A A+E +NG K+
Sbjct: 117 KALYDTFSAFGNILSCKIVCDEHG-FRGYGFVHFEKEESATIAIERVNGTMLHGKK 171
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/177 (57%), Positives = 133/177 (75%), Gaps = 3/177 (1%)
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK+ID+KAL+D FSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGML
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 177 LNDKQVYVGHFLRKQERDTEINK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LND++V+VG F ++ER+ E+ +FTNVY+KN E +E L++ FG +G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
M D GKSK FGFV+FE +DA +AV +NGK+ + K+ YVG+AQKK ER+ ELK +
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVERQTELKRK 176
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 113/185 (61%), Gaps = 11/185 (5%)
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KNL +S + L F +G I S V+ D +G SK +GFV+FE + A RA+E +NG
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+D++ +VG+ + + ERE EL + A +F N+YIKN + +DDE+LK+LF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFG 109
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
FG S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R
Sbjct: 110 XFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVER 169
Query: 388 RARLQ 392
+ L+
Sbjct: 170 QTELK 174
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 104/176 (59%), Gaps = 8/176 (4%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89
+L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA+E +N
Sbjct: 2 NLDKSIDNKALYDXFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 90 LNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + + V + R + GA N++IKN + +D + L + F FG LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
TD +G+SKG+GFV F+ E AQKA+ ++NG LN KQ+YVG +K ER TE+ +
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVERQTELKR 175
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF G +SV+V D S +S G+G+V+F
Sbjct: 81 GARAKEF--TNVYIKNFGEDMDDERLKELFGXFGPALSVKVMTDESG-KSKGFGFVSFER 137
Query: 75 AQEAARALEMLNFTPLNGKPIRV 97
++A +A+ +N LNGK I V
Sbjct: 138 HEDAQKAVXEMNGKELNGKQIYV 160
>gi|429966446|gb|ELA48443.1| hypothetical protein VCUG_00052 [Vavraia culicis 'floridensis']
Length = 511
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 131/375 (34%), Positives = 207/375 (55%), Gaps = 21/375 (5%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR---DLSTRRSLGYGYVNFSNAQEAARA 81
++YVGDL +S LY +F+ +G ++++++ + D + Y YV FS +EA A
Sbjct: 17 TVYVGDLSLKAVESDLYKIFSTVGSIITIKLVKPAMDNFPNYTTCYAYVLFSQEEEALEA 76
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LNF ++ K +RVM ++ ++ GNI IKNL D K LHDTFS FG ILSC
Sbjct: 77 VNKLNFFKVHDKEMRVMLYDKE-RIKSMDRGNIVIKNLSADCDSKTLHDTFSIFGEILSC 135
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINK 199
KVA + G+ KG+GFVQF N+ A+KA++ M ++ GH ++ K E++ +I
Sbjct: 136 KVALNSQGKCKGFGFVQFKNKNGARKALKFGTEMQMD------GHAIKVEKYEKNYKIKT 189
Query: 200 SK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
FTNV+ KN +TTE++++ F G ++S DG + FGF N+EN+ DA
Sbjct: 190 GSRAFTNVFFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKPDGTLRGFGFANYENATDAQ 249
Query: 258 RAVEALNGKK-FDDK---EWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
RA++ L+GK F+ K +YV +AQ K +R L FE+ + NLY+ L
Sbjct: 250 RAIDELSGKDVFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLN--YKRNLYVTRL 307
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
++ E++++LFS FG + S V +D + +V FST +EAS A+ + N +
Sbjct: 308 PNTYGKEEVQELFSQFGKVISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNEIYID 367
Query: 373 SKPLYVALAQRKEDR 387
S + + + K +R
Sbjct: 368 SVKINITYFKSKNER 382
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 137/278 (49%), Gaps = 18/278 (6%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++ + +L A+ L+D F+ G+++S +V + S + G+G+V F N A +AL+
Sbjct: 107 NIVIKNLSADCDSKTLHDTFSIFGEILSCKVALN-SQGKCKGFGFVQFKNKNGARKALKF 165
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
++G I+V ++ ++ N+F KN + + D F + G + S
Sbjct: 166 GTEMQMDGHAIKVEKYEKNYKIKTGSRAFTNVFFKNFPLTTTEQEMKDIFMSIGKVSSFY 225
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND----KQVYVGHFLRKQERDTEIN 198
A +G +G+GF ++N AQ+AI++L+G + + + YV KQ+R ++
Sbjct: 226 FAAKPDGTLRGFGFANYENATDAQRAIDELSGKDVFEGKYPEPFYVQQAQTKQQRLDSLS 285
Query: 199 KS--KFT--------NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGF 247
+ K + N+YV L + +E++Q+ F ++G + S V +D + K + +
Sbjct: 286 SAFEKLSMSGLNYKRNLYVTRLPNTYGKEEVQELFSQFGKVISVCVGKDNVVNEDKNWAY 345
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
V F +D+A+ AVE N D + + + K+ERE
Sbjct: 346 VCFSTADEASIAVEKGNEIYIDSVKINITYFKSKNERE 383
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 29/192 (15%)
Query: 192 ERDTEINKSKFTN---VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG----DGKSKC 244
E+ ++I K+K N VYV +LS E DL K F G+I + +++ + C
Sbjct: 2 EKASKIEKTKKENNCTVYVGDLSLKAVESDLYKIFSTVGSIITIKLVKPAMDNFPNYTTC 61
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
+ +V F ++A AV LN K DKE V K+ + ++
Sbjct: 62 YAYVLFSQEEEALEAVNKLNFFKVHDKEMRVMLYDKERIKSMD----------------- 104
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL- 363
N+ IKNL D + L FS FG I SCKV + G +G GFV F A +AL
Sbjct: 105 RGNIVIKNLSADCDSKTLHDTFSIFGEILSCKVALNSQGKCKGFGFVQFKNKNGARKALK 164
Query: 364 ----LEMNGKMV 371
++M+G +
Sbjct: 165 FGTEMQMDGHAI 176
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVR-VCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T+++ + T+ ++ D+F +G+V S + T R G+G+ N+ NA +A RA+
Sbjct: 195 TNVFFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKPDGTLR--GFGFANYENATDAQRAI 252
Query: 83 EMLN----FTPLNGKPIRVMYSHRD-----------PSLRKSGAG---NIFIKNLDKAID 124
+ L+ F +P V + L SG N+++ L
Sbjct: 253 DELSGKDVFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLNYKRNLYVTRLPNTYG 312
Query: 125 HKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
+ + + FS FG ++S V D + + K + +V F + A A+EK N + ++ ++
Sbjct: 313 KEEVQELFSQFGKVISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNEIYIDSVKIN 372
Query: 184 VGHFLRKQERD 194
+ +F K ER+
Sbjct: 373 ITYFKSKNERE 383
>gi|440857933|gb|ELR44433.1| hypothetical protein M91_06292, partial [Bos grunniens mutus]
Length = 149
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 116/150 (77%), Gaps = 1/150 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA
Sbjct: 61 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 120
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D G KGYGFV F +ESA++AI+ +NG
Sbjct: 121 CDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 61 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 116
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNG 265
V D G K +GFV+F+ + A RA++A+NG
Sbjct: 117 CKVACDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 86/168 (51%), Gaps = 22/168 (13%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 263 LNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 61 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 102
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG
Sbjct: 103 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEASRAL 363
+LY+ +L + + L + FSP G I S ++ RD I+R G +V + P +A RAL
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRD--KITRRSLGYAYVNYQQPVDAKRAL 58
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ +P+ + +QR R
Sbjct: 59 ETLNFDVIKGRPVRIMWSQRDPSLR 83
>gi|402697291|gb|AFQ90833.1| polyA-binding protein cytoplasmic 1, partial [Malaclemys terrapin]
Length = 175
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 132/176 (75%), Gaps = 3/176 (1%)
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 177 LNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LND++V+VG F ++ER+ E+ +FTNVY+KN E +E L++ FG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKV 119
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
M D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 175
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 112/185 (60%), Gaps = 11/185 (5%)
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KNL +S + L +F +G I S V+ D +G SK +GFV+FE + A RA+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+D++ +VG+ + + ERE EL + A +F N+YIKN + +DDE+LK+LF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFG 109
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R
Sbjct: 110 XXXPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 388 RARLQ 392
+ L+
Sbjct: 170 QTELK 174
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89
+L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA+E +N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 90 LNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + + V + R + GA N++IKN + +D + L + F LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKV 119
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE+ +
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 175
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF +SV+V D S +S G+G+V+F
Sbjct: 81 GARAKEF--TNVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESG-KSKGFGFVSFER 137
Query: 75 AQEAARALEMLNFTPLNGKPIRV 97
++A +A++ +N LNGK I V
Sbjct: 138 HEDAQKAVDEMNGKELNGKQIYV 160
>gi|296081049|emb|CBI18330.3| unnamed protein product [Vitis vinifera]
Length = 145
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 97/142 (68%), Positives = 110/142 (77%), Gaps = 3/142 (2%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
NGG NQ +TSLYVG LE+NVTDS L+DLF Q+G VVSV++C DLSTRRSL YG VN
Sbjct: 6 NGG---ENQLVSTSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVN 62
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
N Q+ RAL++LNFT LNGKP R+MYSH DPS+RKSG NIFIKNLDK +DHKAL DT
Sbjct: 63 HGNPQDTVRALDVLNFTHLNGKPTRIMYSHCDPSVRKSGTRNIFIKNLDKRVDHKALRDT 122
Query: 132 FSAFGNILSCKVATDLNGQSKG 153
FS FGNI SCKVA D +G G
Sbjct: 123 FSTFGNIFSCKVAADASGSYSG 144
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVE 261
T++YV L + T+ L FG+ G + S + D +S +G VN N D RA++
Sbjct: 15 TSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTVRALD 74
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN + K + + + +++++ + N++IKNLD +D +
Sbjct: 75 VLNFTHLNGKPTRI------------MYSHCDPSVRKSGTR----NIFIKNLDKRVDHKA 118
Query: 322 LKQLFSPFGSITSCKVMRDPSG 343
L+ FS FG+I SCKV D SG
Sbjct: 119 LRDTFSTFGNIFSCKVAADASG 140
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKL 172
+++ L+ + L D F G ++S ++ DL+ + S YG V N + +A++ L
Sbjct: 17 LYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTVRALDVL 76
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N LN K + + D + KS N+++KNL + + L+ +F +G I S
Sbjct: 77 NFTHLNGKPTRIMY----SHCDPSVRKSGTRNIFIKNLDKRVDHKALRDTFSTFGNIFSC 132
Query: 233 VVMRDGDG 240
V D G
Sbjct: 133 KVAADASG 140
>gi|440493085|gb|ELQ75593.1| Polyadenylate-binding protein (RRM superfamily), partial
[Trachipleistophora hominis]
Length = 513
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 132/375 (35%), Positives = 206/375 (54%), Gaps = 21/375 (5%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR---DLSTRRSLGYGYVNFSNAQEAARA 81
++YVGDL +S LY +F+ +G ++++++ + D + Y YV FS +EA A
Sbjct: 19 TVYVGDLSLKTVESDLYKIFSTVGSIITIKLVKPVMDNFPNYTTCYAYVLFSQEEEALEA 78
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LNF ++ K +RVM ++ ++ GNI IKNL D K LHDTFS FG ILSC
Sbjct: 79 VNKLNFFKVHDKEMRVMLYDKE-RIKSMDRGNIVIKNLSADCDSKTLHDTFSIFGEILSC 137
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINK 199
KVA + G+ KG+GFVQF N+ A+KA++ M ++ GH ++ K E++ +I
Sbjct: 138 KVAQNSQGKCKGFGFVQFKNKNGARKALKFGTEMQMD------GHAIKVEKYEKNYKIKT 191
Query: 200 SK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
FTNV+ KN +TTE+ L++ F G ++S DG + FGF N+EN+ DA
Sbjct: 192 GSRAFTNVFFKNFPSTTTEQQLKEIFMSIGKVSSFYFATKPDGGLRGFGFANYENAADAQ 251
Query: 258 RAVEALNGKK-FDDK---EWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+A++ L+GK F+ K +YV +AQ K +R L FE+ + NLY+ L
Sbjct: 252 KAIDELSGKDIFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLN--YKRNLYVTRL 309
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
+ E++++LFS +G I S V +D + +V FST +EAS A+ + N +
Sbjct: 310 PSTYGKEEVEELFSQYGKIISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNEVYID 369
Query: 373 SKPLYVALAQRKEDR 387
S + V + K +R
Sbjct: 370 SVKINVTYFKSKNER 384
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 139/278 (50%), Gaps = 18/278 (6%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++ + +L A+ L+D F+ G+++S +V ++ S + G+G+V F N A +AL+
Sbjct: 109 NIVIKNLSADCDSKTLHDTFSIFGEILSCKVAQN-SQGKCKGFGFVQFKNKNGARKALKF 167
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
++G I+V ++ ++ N+F KN + L + F + G + S
Sbjct: 168 GTEMQMDGHAIKVEKYEKNYKIKTGSRAFTNVFFKNFPSTTTEQQLKEIFMSIGKVSSFY 227
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND----KQVYVGHFLRKQERDTEIN 198
AT +G +G+GF ++N AQKAI++L+G + + + YV KQ+R ++
Sbjct: 228 FATKPDGGLRGFGFANYENAADAQKAIDELSGKDIFEGKYPEPFYVQQAQTKQQRLDSLS 287
Query: 199 KS--KFT--------NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGF 247
+ K + N+YV L + +E++++ F +YG I S V +D + K + +
Sbjct: 288 SAFEKLSMSGLNYKRNLYVTRLPSTYGKEEVEELFSQYGKIISVCVGKDNVVNEDKNWAY 347
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
V F +D+A+ AVE N D + V + K+ERE
Sbjct: 348 VCFSTADEASIAVEKGNEVYIDSVKINVTYFKSKNERE 385
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 88/192 (45%), Gaps = 29/192 (15%)
Query: 192 ERDTEINKSKFTN---VYVKNLSESTTEEDLQKSFGEYGTITSA----VVMRDGDGKSKC 244
E+ ++I K+K N VYV +LS T E DL K F G+I + VM + + C
Sbjct: 4 EKASKIEKTKKENNCTVYVGDLSLKTVESDLYKIFSTVGSIITIKLVKPVMDNFPNYTTC 63
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
+ +V F ++A AV LN K DKE V K+ + ++
Sbjct: 64 YAYVLFSQEEEALEAVNKLNFFKVHDKEMRVMLYDKERIKSMD----------------- 106
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL- 363
N+ IKNL D + L FS FG I SCKV ++ G +G GFV F A +AL
Sbjct: 107 RGNIVIKNLSADCDSKTLHDTFSIFGEILSCKVAQNSQGKCKGFGFVQFKNKNGARKALK 166
Query: 364 ----LEMNGKMV 371
++M+G +
Sbjct: 167 FGTEMQMDGHAI 178
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 24/192 (12%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR--DLSTRRSLGYGYVNFSNAQEAARA 81
T+++ + + T+ QL ++F +G+V S D R G+G+ N+ NA +A +A
Sbjct: 197 TNVFFKNFPSTTTEQQLKEIFMSIGKVSSFYFATKPDGGLR---GFGFANYENAADAQKA 253
Query: 82 LEMLN----FTPLNGKPIRVMYSHRD-----------PSLRKSGAG---NIFIKNLDKAI 123
++ L+ F +P V + L SG N+++ L
Sbjct: 254 IDELSGKDIFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLNYKRNLYVTRLPSTY 313
Query: 124 DHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+ + + FS +G I+S V D + + K + +V F + A A+EK N + ++ ++
Sbjct: 314 GKEEVEELFSQYGKIISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNEVYIDSVKI 373
Query: 183 YVGHFLRKQERD 194
V +F K ER+
Sbjct: 374 NVTYFKSKNERE 385
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/178 (56%), Positives = 132/178 (74%), Gaps = 3/178 (1%)
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGY FV F+ +++A +AIEK+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 177 LNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LND++V+VG F ++ER+ E+ +FTNVY+KN + +E L++ F +YG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKV 119
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
M D GKSK FGFV+FE +DA +AVE +NGK + K +VG+AQKK ER+ ELK +F
Sbjct: 120 MTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVERQAELKRKF 177
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 116/185 (62%), Gaps = 11/185 (5%)
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KNL +S + L +F +G I S V+ D +G SK + FV+FE D A RA+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+D++ +VG+ + + ERE EL + A +F N+YIKN D +DDE+LK++FS
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGDDMDDERLKEMFS 109
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
+G S KVM D +G S+G GFV+F E+A++A+ EMNGK V K ++V AQ+K +R
Sbjct: 110 KYGKTLSVKVMTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVER 169
Query: 388 RARLQ 392
+A L+
Sbjct: 170 QAELK 174
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 101/179 (56%), Gaps = 9/179 (5%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89
+L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA+E +N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 90 LNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + + V + R + GA N++IKN +D + L + FS +G LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKV 119
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
TD G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER E+ K KF
Sbjct: 120 MTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVERQAEL-KRKF 177
>gi|19074720|ref|NP_586226.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
gi|74697505|sp|Q8SR30.1|PABP_ENCCU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|19069362|emb|CAD25830.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
Length = 502
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 131/378 (34%), Positives = 204/378 (53%), Gaps = 23/378 (6%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ ++YVG+L DS L+ +F+ +G+V+SV++ + S + +V F N ++A RA+
Sbjct: 13 SLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAERAI 70
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
L+ + IRVM P GNIF+KNL + K L D FS FG I+SCK
Sbjct: 71 REYKHYELHNRQIRVMKKDERPP----ETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCK 126
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIE---KLNGMLLNDKQVYVGHF---LRKQERDTE 196
VAT +G+SKGYGFVQF +++A+K I+ L+G+LL ++ V + ++K E ++
Sbjct: 127 VATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGE--SK 184
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+ FTN ++KN +E +L + YG +TS +GK K F F NFEN + A
Sbjct: 185 KTSATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESA 244
Query: 257 ARAVEALN-------GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
A++ L+ G+ + +Y+ K Q+K ER EL+ FEQ M ++ NLY
Sbjct: 245 LNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQ-MSMQGQSYK-KNLY 302
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
I N+ + E+L +F FG+ITS V D + + ++ +STPEEAS A+ N
Sbjct: 303 ITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERGNEI 362
Query: 370 MVVSKPLYVALAQRKEDR 387
+ L VA + K +R
Sbjct: 363 YLDGNRLQVAYFKNKLER 380
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 21/152 (13%)
Query: 66 GYGYVNFSNAQEAARALEMLNFT-PL------NGKPIRVMYSHRDPS----LRK------ 108
G+ + NF N + A A++ L+ T P G+ + R LRK
Sbjct: 232 GFAFANFENHESALNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQMS 291
Query: 109 ----SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEES 164
S N++I N+ + + L F FGNI S V D K Y ++ + E
Sbjct: 292 MQGQSYKKNLYITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEE 351
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
A A+E+ N + L+ ++ V +F K ER E
Sbjct: 352 ASIAVERGNEIYLDGNRLQVAYFKNKLERMKE 383
>gi|50545625|ref|XP_500351.1| YALI0B00616p [Yarrowia lipolytica]
gi|49646217|emb|CAG82565.1| YALI0B00616p [Yarrowia lipolytica CLIB122]
Length = 589
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 189/384 (49%), Gaps = 34/384 (8%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N T S+YV +L +V+++ L++LF G + +++ RD R LG+ YV F N A
Sbjct: 14 NTTTTMSIYVANLPGSVSEADLFELFKPHGPLKVIKIPRDPKLRTPLGHAYVTFYNPDHA 73
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKS-------------GAGNIFIKNLDKAIDH 125
AL L T L G+ + + PS S A +F+++ +D
Sbjct: 74 DAALGALKETELGGQQVTCALTEEVPSSASSMSTPPSSAHSPIDPARAVFVRDTRDGVDA 133
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
+ G A L + F E A K +L+D+ +
Sbjct: 134 ATTKTALESLG-------AVSLQPKGPNAFVAVFPTAEEASK--------VLSDE---LA 175
Query: 186 HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+ RD K+ FTN++V+ LS TTEE L+ F +G +TS ++ D ++K F
Sbjct: 176 NLEISPVRDP---KTHFTNLFVRGLSRETTEEALRAEFERFGAVTSLLLPLDESHRAKGF 232
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG 305
GFVNFE DA AV AL+G + V +AQ K ER+ ELK +E N E +G
Sbjct: 233 GFVNFEEHRDAVTAVAALDGAELCGARISVSRAQSKVERQAELKRAYEANRIERLRNARG 292
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
NLYI NL+ +I++E+L+ FS FG ITS ++M D G S+G GFV F P+ AS A+ E
Sbjct: 293 TNLYITNLNPAINNERLRAYFSKFGEITSVRIMLDAVGNSKGFGFVCFRDPDHASNAIAE 352
Query: 366 MNGKMVVSKPLYVALAQRKEDRRA 389
M+ + + L VA+A +K+ + A
Sbjct: 353 MHNRPIEGNVLQVAIAHKKDPQSA 376
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 120/286 (41%), Gaps = 35/286 (12%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEK 171
+I++ NL ++ L + F G + K+ D ++ G+ +V F N + A A+
Sbjct: 20 SIYVANLPGSVSEADLFELFKPHGPLKVIKIPRDPKLRTPLGHAYVTFYNPDHADAALGA 79
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
L ++TE+ + T + + S + S +
Sbjct: 80 L--------------------KETELGGQQVTCALTEEVPSSASSMSTPPSSAHSPIDPA 119
Query: 232 -AVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN-GKKFDDKEWYVGKAQKKSEREL-- 286
AV +RD DG V+ + A ++ A++ K + V +++ + L
Sbjct: 120 RAVFVRDTRDG-------VDAATTKTALESLGAVSLQPKGPNAFVAVFPTAEEASKVLSD 172
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
EL + +++ F NL+++ L +E L+ F FG++TS + D S ++
Sbjct: 173 ELANLEISPVRDPKTHF--TNLFVRGLSRETTEEALRAEFERFGAVTSLLLPLDESHRAK 230
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G GFV F +A A+ ++G + + V+ AQ K +R+A L+
Sbjct: 231 GFGFVNFEEHRDAVTAVAALDGAELCGARISVSRAQSKVERQAELK 276
>gi|449329878|gb|AGE96146.1| polyadenylate-binding protein 2 [Encephalitozoon cuniculi]
Length = 502
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 131/378 (34%), Positives = 204/378 (53%), Gaps = 23/378 (6%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ ++YVG+L DS L+ +F+ +G+V+SV++ + S + +V F N ++A RA+
Sbjct: 13 SLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAERAI 70
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
L+ + IRVM P GNIF+KNL + K L D FS FG I+SCK
Sbjct: 71 REYKHYELHNRQIRVMKKDERPP----ETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCK 126
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIE---KLNGMLLNDKQVYVGHF---LRKQERDTE 196
VAT +G+SKGYGFVQF +++A+K I+ L+G+LL ++ V + ++K E ++
Sbjct: 127 VATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGE--SK 184
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+ FTN ++KN +E +L + YG +TS +GK K F F NFEN + A
Sbjct: 185 KTSATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESA 244
Query: 257 ARAVEALN-------GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
A++ L+ G+ + +Y+ K Q+K ER EL+ FEQ M ++ NLY
Sbjct: 245 LNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQ-MSMQGQSYK-KNLY 302
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
I N+ + E+L +F FG+ITS V D + + ++ +STPEEAS A+ N
Sbjct: 303 ITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERGNEI 362
Query: 370 MVVSKPLYVALAQRKEDR 387
+ L VA + K +R
Sbjct: 363 YLDGNRLQVAYFKNKLER 380
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 21/152 (13%)
Query: 66 GYGYVNFSNAQEAARALEMLNFT-PL------NGKPIRVMYSHRDPS----LRK------ 108
G+ + NF N + A A++ L+ T P G+ + R LRK
Sbjct: 232 GFAFANFENHESALNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQMS 291
Query: 109 ----SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEES 164
S N++I N+ + + L F FGNI S V D K Y ++ + E
Sbjct: 292 MQGQSYKKNLYITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEE 351
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
A A+E+ N + L+ ++ V +F K ER E
Sbjct: 352 ASIAVERGNEIYLDGNRLQVAYFKNKLERMKE 383
>gi|402697295|gb|AFQ90835.1| polyA-binding protein cytoplasmic 1, partial [Sternotherus minor]
Length = 175
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 130/176 (73%), Gaps = 3/176 (1%)
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK+JD+KAL+D FSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGML
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 177 LNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LND++V+VG F ++ER+ + +FTNVY+KN E +E L++ FG +G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
M D GKSK FGFV+FE +DA +AV +NGK+ + K+ YV +AQKK ER+ ELK
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVERQTELKR 175
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 111/185 (60%), Gaps = 11/185 (5%)
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KNL +S + L F +G I S V+ D +G SK +GFV+FE + A RA+E +NG
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+D++ +VG+ + + ERE L + A +F N+YIKN + +DDE+LK+LF
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGAR--------AKEF--TNVYIKNFGEDMDDERLKELFG 109
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
FG S KVM D SG S+G GFV+F E+A +A+ EMNGK K +YV AQ+K +R
Sbjct: 110 XFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVER 169
Query: 388 RARLQ 392
+ L+
Sbjct: 170 QTELK 174
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89
+L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA+E +N
Sbjct: 2 NLDKSJDNKALYDXFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 90 LNGKPIRV----MYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + + V R+ L R N++IKN + +D + L + F FG LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
TD +G+SKG+GFV F+ E AQKA+ ++NG N KQ+YV +K ER TE+ +
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVERQTELKR 175
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF G +SV+V D S +S G+G+V+F
Sbjct: 81 GARAKEF--TNVYIKNFGEDMDDERLKELFGXFGPALSVKVMTDESG-KSKGFGFVSFER 137
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR 102
++A +A+ +N NGK I V + +
Sbjct: 138 HEDAQKAVXEMNGKEXNGKQIYVXRAQK 165
>gi|289740845|gb|ADD19170.1| polyadenylate-binding protein [Glossina morsitans morsitans]
Length = 321
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 139/188 (73%), Gaps = 1/188 (0%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE 170
+G I+IKNL+++ID+KA++DTFSAFGNIL+C VA D +G S+GYGFVQFD+EE+A+ AIE
Sbjct: 127 SGKIYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIE 186
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
K+NG+L N ++V+V ++ +++R+ E ++F N+YVKN +E +E+++++ F YG IT
Sbjct: 187 KVNGILCNSQKVHVVKYIPRRDREQE-KATQFRNLYVKNFNEDFSEQNMKEMFEPYGRIT 245
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S +M D +G+SK FGFV FEN A AV ALNGK+ DK YV +A K ER+ E+
Sbjct: 246 SHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSKIERQQEINR 305
Query: 291 QFEQNMKE 298
+ E+ ++
Sbjct: 306 KLEERKRQ 313
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 104/187 (55%), Gaps = 13/187 (6%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D G S+ +GFV F++ + A A+E +N
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIEKVN 189
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G + ++ +V K + +RE E QF NLY+KN ++ ++ +K+
Sbjct: 190 GILCNSQKVHVVKYIPRRDREQEKATQFR-------------NLYVKNFNEDFSEQNMKE 236
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
+F P+G ITS K+M D G S+ GFVAF P+ A A++ +NGK + K LYVA A K
Sbjct: 237 MFEPYGRITSHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSK 296
Query: 385 EDRRARL 391
+R+ +
Sbjct: 297 IERQQEI 303
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V F + + A A+E +
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKD-EHGNSRGYGFVQFDSEEAARAAIEKV 188
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KN ++ + + + F +G I S K
Sbjct: 189 NGILCNSQKVHVVKYIPRRDREQEKATQFRNLYVKNFNEDFSEQNMKEMFEPYGRITSHK 248
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
+ TD G+SK +GFV F+N +SA A+ LNG L DK +YV L K ER EIN+
Sbjct: 249 IMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSKIERQQEINR 305
>gi|13365525|dbj|BAB39136.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 118/153 (77%), Gaps = 3/153 (1%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV
Sbjct: 1 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 59
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTT 215
F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E
Sbjct: 60 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDME 119
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+E L++ F ++G S VM D GKS+ FGFV
Sbjct: 120 DEKLREIFSKFGPALSIRVMTDDGGKSRSFGFV 152
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 95/161 (59%), Gaps = 11/161 (6%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE
Sbjct: 4 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 62
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A RA+E +NG +D++ +VG+ + + ERE E M A +F N+YIK
Sbjct: 63 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE--------MGARAKEF--TNVYIK 112
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
N + ++DEKL+++FS FG S +VM D G SR GFV
Sbjct: 113 NFGEDMEDEKLREIFSKFGPALSIRVMTDDGGKSRSFGFVC 153
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 8/142 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 13 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 70
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + ++ + L + FS F
Sbjct: 71 IEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMEDEKLREIFSKF 130
Query: 136 GNILSCKVATDLNGQSKGYGFV 157
G LS +V TD G+S+ +GFV
Sbjct: 131 GPALSIRVMTDDGGKSRSFGFV 152
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
N++IKNLD SID++ L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +
Sbjct: 15 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEK 73
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARL 391
MNG ++ + ++V + +++R A +
Sbjct: 74 MNGMLLNDRKVFVGRFKSRKEREAEM 99
>gi|296235783|ref|XP_002763047.1| PREDICTED: uncharacterized protein LOC100399785, partial
[Callithrix jacchus]
Length = 445
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 108/147 (73%), Gaps = 2/147 (1%)
Query: 14 GGANANQ-FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GG N F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+
Sbjct: 299 GGCEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNY 358
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
+A RALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ F
Sbjct: 359 QQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIF 418
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQF 159
SAFGNILSCKVA D G KGYGFV F
Sbjct: 419 SAFGNILSCKVACDEKG-PKGYGFVHF 444
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 310 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 369
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 370 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 425
Query: 231 SAVVMRDGDGKSKCFGFVNFE 251
S V D G K +GFV+F+
Sbjct: 426 SCKVACDEKGP-KGYGFVHFQ 445
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 18/154 (11%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARA 259
++YV +L TE L + F G I S + RD +S + +VN++ DA RA
Sbjct: 308 PMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRA 367
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
+E LN + + S+R+ L+ K N++IKNL +ID+
Sbjct: 368 LETLNFDVIKGRPVRI----MWSQRDPSLR------------KSGVGNVFIKNLGKTIDN 411
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
+ L +FS FG+I SCKV D G +G GFV F
Sbjct: 412 KALYNIFSAFGNILSCKVACDEKG-PKGYGFVHF 444
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFS 354
E F A+LY+ +L + + L + FSP G I S ++ RD I+R G +V +
Sbjct: 302 EGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRD--KITRRSLGYAYVNYQ 359
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL +N ++ +P+ + +QR R
Sbjct: 360 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 393
>gi|115468728|ref|NP_001057963.1| Os06g0589700 [Oryza sativa Japonica Group]
gi|113596003|dbj|BAF19877.1| Os06g0589700 [Oryza sativa Japonica Group]
Length = 399
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/165 (56%), Positives = 119/165 (72%)
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
MRD +G S+CFGFVNFE S+ A AV+ LNGK D YV +AQKKSER+ ELK +FE
Sbjct: 1 MRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEH 60
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
+ + +K Q NLY+KNLDD I+DE L++LF FG + SCKVM D G S+G GFV+F+
Sbjct: 61 DKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFA 120
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
T E+A+ A+L+MNGKMV KPLYVA+AQRKE+R+A L + R
Sbjct: 121 TVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFARVR 165
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 86/160 (53%), Gaps = 14/160 (8%)
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF--- 202
D NG S+ +GFV F+ E A+ A++ LNG + D +YV +K ER E+ K+KF
Sbjct: 3 DANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAEL-KAKFEHD 61
Query: 203 ----------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
N+Y+KNL + +E L+K F +G + S VM D G+SK GFV+F
Sbjct: 62 KNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFAT 121
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+DA A+ +NGK K YV AQ+K ER+ L F
Sbjct: 122 VEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHF 161
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 75/148 (50%), Gaps = 26/148 (17%)
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPI--RVMY-------SHRDPSLR---------- 107
+G+VNF ++ A A++ LN GK I V+Y S R L+
Sbjct: 11 FGFVNFEKSECARNAVKNLN-----GKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQK 65
Query: 108 --KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESA 165
K N+++KNLD I+ + L F FG + SCKV D +G+SKG GFV F E A
Sbjct: 66 FEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDA 125
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI K+NG ++ K +YV RK+ER
Sbjct: 126 NNAILKMNGKMVGKKPLYVAVAQRKEER 153
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T +LY+ +L+ ++ D L LF G+V S +V D S RS G G+V+F+ ++A A+
Sbjct: 71 TVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLD-SHGRSKGCGFVSFATVEDANNAI 129
Query: 83 EMLNFTPLNGKPIRVMYSHR 102
+N + KP+ V + R
Sbjct: 130 LKMNGKMVGKKPLYVAVAQR 149
>gi|33504432|emb|CAD43730.1| putative poly(A)-binding protein [Mangifera indica]
Length = 130
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 91/107 (85%), Positives = 97/107 (90%)
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
EQ E ADKFQGANLY+KNLDDSIDD+KLKQLFS FGSITSCKVMRDP+GISRGSGFVA
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
F+TPEEASRA+LEMNGKMVVSKPL+VALAQRKEDRRARLQ Q R
Sbjct: 61 FTTPEEASRAILEMNGKMVVSKPLFVALAQRKEDRRARLQAQFSQIR 107
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 62/97 (63%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+K + N+Y+KNL +S ++ L++ F ++G+ITS VMRD +G S+ GFV F ++A+
Sbjct: 9 DKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEAS 68
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
RA+ +NGK K +V AQ+K +R L+ QF Q
Sbjct: 69 RAILEMNGKMVVSKPLFVALAQRKEDRRARLQAQFSQ 105
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 171
N+++KNLD +ID L FS FG+I SCKV D NG S+G GFV F E A +AI +
Sbjct: 14 ANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILE 73
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTT 215
+NG ++ K ++V RK++R + +++F+ + ++ S
Sbjct: 74 MNGKMVVSKPLFVALAQRKEDRRARL-QAQFSQIRPVAMAPSVA 116
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A++F +LY+ +L+ ++ D +L LF+Q G + S +V RD S G G+V F+ +E
Sbjct: 8 ADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRD-PNGISRGSGFVAFTTPEE 66
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A+RA+ +N + KP+ V + R
Sbjct: 67 ASRAILEMNGKMVVSKPLFVALAQR 91
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 122/167 (73%), Gaps = 1/167 (0%)
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S VM D GKSK F FV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK E + E KH
Sbjct: 15 SVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVEPQTEPKH 74
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+FEQ ++ ++QG NLY+KNLDD IDDE L++ FSPFG+ITS KVM + G S+G GF
Sbjct: 75 KFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTITSAKVMME-GGRSKGFGF 133
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
V FS+PEEA++A+ EMNG+ V +KPLYVALAQ KE+ A L +Q
Sbjct: 134 VCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHLTSQYMQ 180
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 108/186 (58%), Gaps = 16/186 (8%)
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+D + L D F LS KV TD +G+SKG+ FV F+ E AQKA++++NG LN KQ+
Sbjct: 1 MDDERLKDLFRP---ALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQI 57
Query: 183 YVGHFLRKQERDTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
YVG +K E TE I + + N+YVKNL + +E L+K F +GTIT
Sbjct: 58 YVGRAQKKVEPQTEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTIT 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
SA VM +G G+SK FGFV F + ++A +AV+ +NG+ K YV AQ K E L
Sbjct: 118 SAKVMMEG-GRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHLTS 176
Query: 291 QFEQNM 296
Q+ Q M
Sbjct: 177 QYMQRM 182
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 28/192 (14%)
Query: 37 DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96
D +L DLF +SV+V D S + S G+ +V+F ++A +A++ +N LNGK I
Sbjct: 3 DERLKDLFRP---ALSVKVMTDESGK-SKGFRFVSFERHEDAQKAVDEMNGKELNGKQIY 58
Query: 97 VMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
V + + D R G N+++KNLD ID + L FS FG I
Sbjct: 59 VGRAQKKVEPQTEPKHKFEQMKQDTITRYQGV-NLYVKNLDDGIDDEHLRKEFSPFGTIT 117
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
S KV + G+SKG+GFV F + E A KA++++NG + K +YV K+E +
Sbjct: 118 SAKVMME-GGRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEE-----SP 171
Query: 200 SKFTNVYVKNLS 211
+ T+ Y++ ++
Sbjct: 172 AHLTSQYMQRMA 183
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+DDE+LK LF P S KVM D SG S+G FV+F E+A +A+ EMNGK + K +
Sbjct: 1 MDDERLKDLFRP---ALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQI 57
Query: 377 YVALAQRK 384
YV AQ+K
Sbjct: 58 YVGRAQKK 65
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 95/191 (49%), Positives = 139/191 (72%), Gaps = 2/191 (1%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE 170
+G I+IKNL+++ID+KA++DTFS FGNIL+C VA D +G S+GYGFV FD+EE+A+ AIE
Sbjct: 101 SGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIE 160
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
K+NGML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG IT
Sbjct: 161 KVNGMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 219
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELK 289
S +M D +G+S+ FGFV FEN A AV L+GK+ D+K YV +A K+ER+ E+
Sbjct: 220 SHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEIN 279
Query: 290 HQFEQNMKEAA 300
+ E+ ++ A
Sbjct: 280 RKLEERKRQKA 290
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 110/188 (58%), Gaps = 14/188 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 163
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 164 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 210
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVAF P+ A A++ ++GK + +K LYVA A
Sbjct: 211 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALS 270
Query: 384 KEDRRARL 391
K +R+ +
Sbjct: 271 KAERQQEI 278
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 162
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 163 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 222
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV F+N +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 223 LMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 280
>gi|162605986|ref|XP_001713508.1| polyadenylate-binding protein [Guillardia theta]
gi|13794428|gb|AAK39803.1|AF165818_11 polyadenylate-binding protein [Guillardia theta]
Length = 389
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 151/260 (58%), Gaps = 4/260 (1%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVGDL ++ D L +F + ++ +R+C+D+ + SLGY YV F++ A +AL +
Sbjct: 6 LYVGDLNVSLKDIDLERIFRKDYEISGLRICKDIFSGNSLGYSYVYFNSYSSAKKALNDM 65
Query: 86 NF---TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
NF T L PIR+M+ + + S+RKSG GN+FIKNL K LH FS +G ILS K
Sbjct: 66 NFYSDTELFKTPIRIMWKNNNNSIRKSGYGNLFIKNLPYNFSPKDLHSLFSEYGEILSSK 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ D G S GYGFV + + A AI LNG L+++K + V HFL K +R+ + F
Sbjct: 126 IKYDNEGSSLGYGFVHYKEMKDAISAINNLNGKLISNKMITVKHFLNKSQRERISSCDLF 185
Query: 203 TNVYVKNLS-ESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
TN+YVKNL + +E+ + FG +G ITS + + K F ++NFEN +DA A+
Sbjct: 186 TNIYVKNLPVDKLSEKVIFNLFGVFGKITSIFIPLWYNSIPKGFAYINFENHEDAEEAII 245
Query: 262 ALNGKKFDDKEWYVGKAQKK 281
+N +K K V KA K
Sbjct: 246 TMNNRKIAGKSLIVCKAINK 265
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 17/246 (6%)
Query: 142 KVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF-LRKQERDTEINK 199
++ D+ +G S GY +V F++ SA+KA+ +N +D +++ + + + I K
Sbjct: 34 RICKDIFSGNSLGYSYVYFNSYSSAKKALNDMN--FYSDTELFKTPIRIMWKNNNNSIRK 91
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
S + N+++KNL + + +DL F EYG I S+ + D +G S +GFV+++ DA A
Sbjct: 92 SGYGNLFIKNLPYNFSPKDLHSLFSEYGEILSSKIKYDNEGSSLGYGFVHYKEMKDAISA 151
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD-DSID 318
+ LNGK +K V KS+RE + D F N+Y+KNL D +
Sbjct: 152 INNLNGKLISNKMITVKHFLNKSQRE----------RISSCDLF--TNIYVKNLPVDKLS 199
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
++ + LF FG ITS + + I +G ++ F E+A A++ MN + + K L V
Sbjct: 200 EKVIFNLFGVFGKITSIFIPLWYNSIPKGFAYINFENHEDAEEAIITMNNRKIAGKSLIV 259
Query: 379 ALAQRK 384
A K
Sbjct: 260 CKAINK 265
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 97/184 (52%), Gaps = 9/184 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L++ +L N + L+ LF++ G+++S ++ D + SLGYG+V++ ++A A
Sbjct: 93 GYGNLFIKNLPYNFSPKDLHSLFSEYGEILSSKIKYD-NEGSSLGYGFVHYKEMKDAISA 151
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSLRKSGAGNIFIKNL--DKAIDHKALHDTFSAF 135
+ LN ++ K I V + S R+ NI++KNL DK + K + + F F
Sbjct: 152 INNLNGKLISNKMITVKHFLNKSQRERISSCDLFTNIYVKNLPVDK-LSEKVIFNLFGVF 210
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + N KG+ ++ F+N E A++AI +N + K + V + K + DT
Sbjct: 211 GKITSIFIPLWYNSIPKGFAYINFENHEDAEEAIITMNNRKIAGKSLIVCKAINKIKIDT 270
Query: 196 EINK 199
INK
Sbjct: 271 -INK 273
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 15/191 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
+YV +L+ S + DL++ F + I+ + +D G S + +V F + A +A+ +
Sbjct: 6 LYVGDLNVSLKDIDLERIFRKDYEISGLRICKDIFSGNSLGYSYVYFNSYSSAKKALNDM 65
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N + D E + K+ + K N + K NL+IKNL + + L
Sbjct: 66 NF--YSDTELF------KTPIRIMWK-----NNNNSIRKSGYGNLFIKNLPYNFSPKDLH 112
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
LFS +G I S K+ D G S G GFV + ++A A+ +NGK++ +K + V
Sbjct: 113 SLFSEYGEILSSKIKYDNEGSSLGYGFVHYKEMKDAISAINNLNGKLISNKMITVKHFLN 172
Query: 384 KEDRRARLQVC 394
K +R R+ C
Sbjct: 173 KS-QRERISSC 182
>gi|123445099|ref|XP_001311313.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121893117|gb|EAX98383.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 419
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 127/377 (33%), Positives = 195/377 (51%), Gaps = 15/377 (3%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L+VGDL V + + +LF + G S + + +V F + + A RAL +
Sbjct: 8 LFVGDLPGYVDGNFIKELFREYGNFPSGTITVKKHKSLDKSFAFVTFESHELARRALLEV 67
Query: 86 NFTPLNGKPIRVMYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N+T L+G PIR+++S DP+ + K + I +LD+ I+ LHD FS FG ++SCK
Sbjct: 68 NYTKLDGVPIRILWS--DPATKRAIKKDFCTLIIFDLDEYIEAAQLHDIFSNFGEVVSCK 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ NG+ +G G+V F EE A + L +N K + + + + +++E F
Sbjct: 126 IPLT-NGKPRGDGYVTFYKEEDAMRVKNDLAQASINGKPIQIVLYCKPTRKNSE---ETF 181
Query: 203 TNVYVKNL--SESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
TNV++K L T EDL K ++G + + + DG S FGF NF DA +AV
Sbjct: 182 TNVFIKPLLVKYFKTNEDLAKLMKDFGEFVNPSIKFNDDGTSSEFGFCNFMYHQDAVKAV 241
Query: 261 EALNGKKF--DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
E+LNGK + E+ +AQ K+ER+ L Q + + ++ +G NLYIKN+D SI+
Sbjct: 242 ESLNGKMHISGEFEFVCCRAQTKAERQAFLAEQSAEFRRRLYEETRGRNLYIKNIDRSIN 301
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGI--SRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
DE+ ++ F FG + C + R+ S+G GFV F T E A AL + K L
Sbjct: 302 DEEFEEYFKQFGEVEKCLISREAQEPHESKGFGFVLFKTKEGAQNALKNTIITPLKGKIL 361
Query: 377 YVALAQRKEDRRARLQV 393
YV KE+R L +
Sbjct: 362 YVNYFIMKEEREHILPM 378
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 134/280 (47%), Gaps = 21/280 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L + DL+ + +QL+D+F+ G+VVS ++ L+ + G GYV F ++A R
Sbjct: 96 TLIIFDLDEYIEAAQLHDIFSNFGEVVSCKI--PLTNGKPRGDGYVTFYKEEDAMRVKND 153
Query: 85 LNFTPLNGKPIR-VMYSHRDPSLRKSGAGNIFIKNLDKAI--DHKALHDTFSAFGNILSC 141
L +NGKPI+ V+Y + N+FIK L ++ L FG ++
Sbjct: 154 LAQASINGKPIQIVLYCKPTRKNSEETFTNVFIKPLLVKYFKTNEDLAKLMKDFGEFVNP 213
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG-MLLNDKQVYVG----------HFLRK 190
+ + +G S +GF F + A KA+E LNG M ++ + +V FL +
Sbjct: 214 SIKFNDDGTSSEFGFCNFMYHQDAVKAVESLNGKMHISGEFEFVCCRAQTKAERQAFLAE 273
Query: 191 QE---RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG--DGKSKCF 245
Q R +++ N+Y+KN+ S +E+ ++ F ++G + ++ R+ +SK F
Sbjct: 274 QSAEFRRRLYEETRGRNLYIKNIDRSINDEEFEEYFKQFGEVEKCLISREAQEPHESKGF 333
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
GFV F+ + A A++ K YV K ERE
Sbjct: 334 GFVLFKTKEGAQNALKNTIITPLKGKILYVNYFIMKEERE 373
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKV-MRDPSGISRGSGFVAFSTPEEASRALLEM 366
L++ +L +D +K+LF +G+ S + ++ + + FV F + E A RALLE+
Sbjct: 8 LFVGDLPGYVDGNFIKELFREYGNFPSGTITVKKHKSLDKSFAFVTFESHELARRALLEV 67
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQVCLL 396
N + P+ + + R + C L
Sbjct: 68 NYTKLDGVPIRILWSDPATKRAIKKDFCTL 97
>gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
Length = 379
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/143 (64%), Positives = 109/143 (76%)
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
A AVE +NG D YVG+AQKKSERE EL+ +FEQ +K QGANLY+KNLDDS
Sbjct: 2 AAAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDS 61
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+DDEKLK++FS +G++TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+ KPL
Sbjct: 62 VDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 121
Query: 377 YVALAQRKEDRRARLQVCLLQCR 399
Y+ALAQRKEDRRA LQ Q R
Sbjct: 122 YIALAQRKEDRRAHLQALFSQIR 144
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 81/139 (58%), Gaps = 12/139 (8%)
Query: 168 AIEKLNGMLLNDKQVYVGHFLRKQERDTEI------------NKSKFTNVYVKNLSESTT 215
A+EK+NG+ L D +YVG +K ER+ E+ KS+ N+Y+KNL +S
Sbjct: 4 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVD 63
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+E L++ F EYG +TS+ VM + G S+ FGFV + N ++A RA+ +NGK K Y+
Sbjct: 64 DEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 123
Query: 276 GKAQKKSERELELKHQFEQ 294
AQ+K +R L+ F Q
Sbjct: 124 ALAQRKEDRRAHLQALFSQ 142
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 57/90 (63%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQK 167
KS N+++KNLD ++D + L + FS +GN+ S KV + G S+G+GFV + N E A +
Sbjct: 47 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALR 106
Query: 168 AIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
A+ ++NG ++ K +Y+ RK++R +
Sbjct: 107 ALSEMNGKMIGRKPLYIALAQRKEDRRAHL 136
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LY+ +L+ +V D +L ++F++ G V S +V + S G+G+V +SN +EA RAL +
Sbjct: 53 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALSEM 111
Query: 86 NFTPLNGKPIRVMYSHR 102
N + KP+ + + R
Sbjct: 112 NGKMIGRKPLYIALAQR 128
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 138/188 (73%), Gaps = 2/188 (1%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I+IKNL+++ID+KA++DTFSAFGNIL+C VA D +G S+GYGFV FD+EE+A+ AIEK+N
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG ITS
Sbjct: 168 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 226
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQF 292
+M D +G+S+ FGFV FE+ A AV L+GK+ D+K YV +A K+ER+ E+ +
Sbjct: 227 LMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 286
Query: 293 EQNMKEAA 300
E+ ++ A
Sbjct: 287 EERKRQKA 294
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 111/188 (59%), Gaps = 14/188 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 168 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 214
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVAF +P+ A A++ ++GK + +K LYVA A
Sbjct: 215 MFEPYGRITSHKLMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALS 274
Query: 384 KEDRRARL 391
K +R+ +
Sbjct: 275 KAERQQEI 282
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 166
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 167 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 226
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV F++ +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 227 LMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 284
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 137/188 (72%), Gaps = 2/188 (1%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I+IKNL+++ID+KA++DTFS FGNIL+C VA D +G S+GYGFV FD+EE+A+ AIEK+N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG ITS
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQF 292
+M D +G+S+ FGFV +EN A AV L+GK+ D+K YV +A K+ER+ E+ +
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 293 EQNMKEAA 300
E+ ++ A
Sbjct: 294 EERKRQKA 301
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 110/188 (58%), Gaps = 14/188 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 221
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVA+ P+ A A++ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 384 KEDRRARL 391
K +R+ +
Sbjct: 282 KAERQQEI 289
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV ++N +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 291
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 137/188 (72%), Gaps = 2/188 (1%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I+IKNL+++ID+KA++DTFS FGNIL+C VA D +G S+GYGFV FD+EE+A+ AIEK+N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG ITS
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQF 292
+M D +G+S+ FGFV +EN A AV L+GK+ D+K YV +A K+ER+ E+ +
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 293 EQNMKEAA 300
E+ ++ A
Sbjct: 294 EERKRQKA 301
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 110/188 (58%), Gaps = 14/188 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 221
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVA+ P+ A A++ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 384 KEDRRARL 391
K +R+ +
Sbjct: 282 KAERQQEI 289
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV ++N +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 291
>gi|194757405|ref|XP_001960955.1| GF11244 [Drosophila ananassae]
gi|190622253|gb|EDV37777.1| GF11244 [Drosophila ananassae]
Length = 307
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 96/205 (46%), Positives = 142/205 (69%), Gaps = 7/205 (3%)
Query: 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGF 156
++ S+ P RK I+IKNL+++ID+KA++DTFS FGNIL+C VA D +G S+GYGF
Sbjct: 103 IINSNSTPDSRK-----IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGF 157
Query: 157 VQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTE 216
V FD EE+A+ AIEK+NGML N+++V+V F+ +++R+ E + F N+YVKNL E TE
Sbjct: 158 VHFDTEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLGEEFTE 216
Query: 217 EDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYV 275
+ L++ F YG ITS +M D +G+S+ FGFV +EN A AV L+GK+ D+K YV
Sbjct: 217 QHLREMFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYV 276
Query: 276 GKAQKKSERELELKHQFEQNMKEAA 300
+A K+ER+ E+ + E+ ++ A
Sbjct: 277 ARALSKAERQQEINRKLEERKRQKA 301
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 109/188 (57%), Gaps = 14/188 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D DG S+ +GFV+F+ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDTEEAARAAIEKVN 174
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLGEEFTEQHLRE 221
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVA+ P+ A A++ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 384 KEDRRARL 391
K +R+ +
Sbjct: 282 KAERQQEI 289
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 6/192 (3%)
Query: 13 GGGANANQFG-TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
GG N+N + +Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V+
Sbjct: 101 GGIINSNSTPDSRKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVH 159
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKAL 128
F + A A+E +N N + + V+ RD K+ N+++KNL + + L
Sbjct: 160 FDTEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLGEEFTEQHL 219
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHF 187
+ F +G I S K+ D G+S+ +GFV ++N +SA A+ L+G L D K +YV
Sbjct: 220 REMFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARA 279
Query: 188 LRKQERDTEINK 199
L K ER EIN+
Sbjct: 280 LSKAERQQEINR 291
>gi|378756066|gb|EHY66091.1| hypothetical protein NERG_00787 [Nematocida sp. 1 ERTm2]
Length = 513
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 123/372 (33%), Positives = 205/372 (55%), Gaps = 15/372 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR-DLSTRRSLGYGYVNFSNAQEAARALE 83
S+YVGD+ + T+S L+ +F+++GQ+ +V + R +LS + Y YV F + A+E
Sbjct: 20 SIYVGDIPTSTTESDLFQIFSKVGQIYTVIIPRKELSIVKDKCYAYVTFFDEASVPTAIE 79
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
NF LNG IRVM ++ S+ + GNI IKNL K D++ L+DTF FG I+SCKV
Sbjct: 80 TFNFYELNGSQIRVMPLDKE-SVVNNREGNIVIKNLPKETDNQTLYDTFIIFGPIVSCKV 138
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINKSK 201
+ + G G++Q+ + + A+ AI+ +N ++LN K++ + K+E+ E +
Sbjct: 139 VKNSLSECSGIGYIQYKDPKIAEVAIQMINKIMLNGKKLCAVQCVPNDKREKKRENVEKI 198
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+Y+KN + EE+++K EYG +TS V R G+ + F F N++ + A A+
Sbjct: 199 FTNIYMKNFPKGVEEEEIKKKLEEYGELTSFFVPRAETGEMRGFAFANYKTHEMAEAAIL 258
Query: 262 ALNGKKF------DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
L+ K F + + YV +A+ KSER E F ++ + N+YI NL
Sbjct: 259 GLHDKPFFGGNSGEGENLYVQRAKLKSERVEETAGYFANPPEQEVRR----NIYITNLPG 314
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+++E + + FS +G I + K+ D +R G+V + E+A++A+ N +P
Sbjct: 315 DLNEEDVVKYFSKYGPINTYKLGTDTKN-NRSYGYVFYQKAEDAAKAVELANKSEYCGQP 373
Query: 376 LYVALAQRKEDR 387
L VA + K+ R
Sbjct: 374 LGVAFFKCKKLR 385
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 125/272 (45%), Gaps = 23/272 (8%)
Query: 36 TDSQ-LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94
TD+Q LYD F G +VS +V ++ S G GY+ + + + A A++M+N LNGK
Sbjct: 118 TDNQTLYDTFIIFGPIVSCKVVKN-SLSECSGIGYIQYKDPKIAEVAIQMINKIMLNGKK 176
Query: 95 IRVMYSHRDPSLRKSGAG------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN 148
+ + + K NI++KN K ++ + + +G + S V
Sbjct: 177 LCAVQCVPNDKREKKRENVEKIFTNIYMKNFPKGVEEEEIKKKLEEYGELTSFFVPRAET 236
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLN------GMLLNDKQVYVGHFLRKQERDTEI----- 197
G+ +G+ F + E A+ AI L+ G + +YV K ER E
Sbjct: 237 GEMRGFAFANYKTHEMAEAAILGLHDKPFFGGNSGEGENLYVQRAKLKSERVEETAGYFA 296
Query: 198 ---NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ N+Y+ NL EED+ K F +YG I + + D ++ +G+V ++ ++
Sbjct: 297 NPPEQEVRRNIYITNLPGDLNEEDVVKYFSKYGPINTYKLGTDTKN-NRSYGYVFYQKAE 355
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
DAA+AVE N ++ + V + K REL
Sbjct: 356 DAAKAVELANKSEYCGQPLGVAFFKCKKLREL 387
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 22/204 (10%)
Query: 189 RKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD--GDGKSKCFG 246
+K++++ +I + ++YV ++ STTE DL + F + G I + ++ R K KC+
Sbjct: 7 QKEKKEGQIGRQ--NSIYVGDIPTSTTESDLFQIFSKVGQIYTVIIPRKELSIVKDKCYA 64
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
+V F + A+E N + + + R + L + N +E
Sbjct: 65 YVTFFDEASVPTAIETFNFYELNGSQI----------RVMPLDKESVVNNRE-------G 107
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N+ IKNL D++ L F FG I SCKV+++ G G++ + P+ A A+ +
Sbjct: 108 NIVIKNLPKETDNQTLYDTFIIFGPIVSCKVVKNSLSECSGIGYIQYKDPKIAEVAIQMI 167
Query: 367 NGKMVVSKPLYVALAQRKEDRRAR 390
N M+ K L A+ D+R +
Sbjct: 168 NKIMLNGKKL-CAVQCVPNDKREK 190
>gi|13365527|dbj|BAB39137.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 91/153 (59%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+S RDP LRKSG GNIFIKN+D++ID+KAL+DT SAFGNILSCKV D NG SKGYGFV
Sbjct: 1 MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFV 59
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTT 215
F+ +E+A +AIE +NGMLLND++V+VGHF ++ER E+ +FTNVY+KN SE
Sbjct: 60 HFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKERMAEMGAKAMEFTNVYIKNFSEDID 119
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
E L+ F E+G S VM D G S+ FGFV
Sbjct: 120 REKLKSIFSEFGKTLSVCVMTDESGCSRGFGFV 152
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 11/162 (6%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS N+++KN+ ES + L + +G I S V+ D +G SK +GFV+FE
Sbjct: 4 QRDPGLRKSGVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFE 62
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A RA+E +NG +D++ +VG + + ER E+ A + N+YIK
Sbjct: 63 TQEAANRAIETMNGMLLNDRKVFVGHFKSRKERMAEM----------GAKAMEFTNVYIK 112
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
N + ID EKLK +FS FG S VM D SG SRG GFV
Sbjct: 113 NFSEDIDREKLKSIFSEFGKTLSVCVMTDESGCSRGFGFVCL 154
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 8/142 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +++ ++ + LYD + G ++S +V D S GYG+V+F + A RA
Sbjct: 13 GVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAANRA 70
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + + GA N++IKN + ID + L FS F
Sbjct: 71 IETMNGMLLNDRKVFVGHFKSRKERMAEMGAKAMEFTNVYIKNFSEDIDREKLKSIFSEF 130
Query: 136 GNILSCKVATDLNGQSKGYGFV 157
G LS V TD +G S+G+GFV
Sbjct: 131 GKTLSVCVMTDESGCSRGFGFV 152
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
N++IKN+D+SID++ L S FG+I SCKV+ D +G S+G GFV F T E A+RA+
Sbjct: 15 GNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIET 73
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARL 391
MNG ++ + ++V + +++R A +
Sbjct: 74 MNGMLLNDRKVFVGHFKSRKERMAEM 99
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 137/188 (72%), Gaps = 2/188 (1%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I+IKNL+++ID+KA++DTFS FGNIL+C VA D +G S+GYGFV FD+EE+A+ AIEK+N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG ITS
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQF 292
+M D +G+S+ FGFV +EN A AV L+GK+ D+K YV +A K+ER+ E+ +
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 293 EQNMKEAA 300
E+ ++ A
Sbjct: 294 EERKRQKA 301
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 110/188 (58%), Gaps = 14/188 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 221
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVA+ P+ A A++ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 384 KEDRRARL 391
K +R+ +
Sbjct: 282 KAERQQEI 289
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV ++N +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 291
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 136/188 (72%), Gaps = 2/188 (1%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I+IKNL+++ID+KA+++TFS FGNIL+C VA D G S+GYGFV FD+EE+A+ AIEK+N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG ITS
Sbjct: 169 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 227
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQF 292
+M D +G+S+ FGFV FEN A AV L+GK+ D+K YV +A K+ER+ E+ +
Sbjct: 228 LMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 287
Query: 293 EQNMKEAA 300
E+ ++ A
Sbjct: 288 EERKRQKA 295
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 111/188 (59%), Gaps = 14/188 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + ++F +G I + V +D +G S+ +GFV+F++ + A A+E +N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 169 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 215
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVAF P+ A A++ ++GK + +K LYVA A
Sbjct: 216 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALS 275
Query: 384 KEDRRARL 391
K +R+ +
Sbjct: 276 KAERQQEI 283
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +Y+ F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKD-EEGNSRGYGFVHFDSEEAARAAIEKV 167
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 168 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 227
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV F+N +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 228 LMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 285
>gi|294875884|ref|XP_002767464.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
gi|239869099|gb|EER00182.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
Length = 230
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 126/175 (72%), Gaps = 3/175 (1%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+SHRDP+LR+SGAGN+++KNLD+ ID+KAL+DTFS FGNILSCKVA +G+S+G+GFV
Sbjct: 1 MWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFV 60
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEE 217
F+++ESA+ AI KLNGM + +K VYV F + ER+ K+ FTNVY+K++ S EE
Sbjct: 61 HFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPKN-FTNVYIKHIPASWNEE 119
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
+++ FG +G ITS V D G+ F FVN+ + A AVE ++GK ++E
Sbjct: 120 KIKEEFGAFGEITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMDGKDVRNEE 172
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 94/179 (52%), Gaps = 15/179 (8%)
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
RD + +S NVYVKNL + + L +F +G I S V DGKS+ FGFV+FE+
Sbjct: 5 RDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFES 64
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+ A A+ LNG + +K YV +K +ER F N+YIK+
Sbjct: 65 DESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPKNF-------------TNVYIKH 111
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
+ S ++EK+K+ F FG ITS V DP G R FV ++ E+A A+ EM+GK V
Sbjct: 112 IPASWNEEKIKEEFGAFGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEMDGKDV 168
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N+Y+KNLD +ID++ L FS FG+I SCKV P G SRG GFV F + E A A+ ++
Sbjct: 16 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL 75
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + K +YVA ++ +R
Sbjct: 76 NGMQIGEKTVYVAPFKKTAER 96
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 8/157 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++YV +L+ N+ + LYD F+ G ++S +V +S G+G+V+F + + A A
Sbjct: 13 GAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVAL-TPDGKSRGFGFVHFESDESAEAA 71
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGN 137
+ LN + K + V + + R G N++IK++ + + + + + F AFG
Sbjct: 72 IAKLNGMQIGEKTVYVA-PFKKTAERNDGTPKNFTNVYIKHIPASWNEEKIKEEFGAFGE 130
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
I S V TD G+ + FV + E A+ A+E+++G
Sbjct: 131 ITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMDG 165
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 137/188 (72%), Gaps = 2/188 (1%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I+IKNL+++ID+KA++DTFS FGNIL+C VA D +G S+GYGFV FD+EE+A+ AIEK+N
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG ITS
Sbjct: 165 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 223
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQF 292
+M D +G+S+ FGFV FE+ A AV L+GK+ D+K YV +A K+ER+ E+ +
Sbjct: 224 LMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 283
Query: 293 EQNMKEAA 300
E+ ++ A
Sbjct: 284 EERKRQKA 291
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 111/188 (59%), Gaps = 14/188 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 165 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 211
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVAF +P+ A A++ ++GK + +K LYVA A
Sbjct: 212 MFEPYGRITSHKLMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALS 271
Query: 384 KEDRRARL 391
K +R+ +
Sbjct: 272 KAERQQEI 279
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 163
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 164 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 223
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV F++ +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 224 LMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 281
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 136/188 (72%), Gaps = 2/188 (1%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I+IKNL+++ID+KA+++TFS FGNIL+C VA D G S+GYGFV FD+EE+A+ AIEK+N
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG ITS
Sbjct: 172 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 230
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQF 292
+M D +G+S+ FGFV FEN A AV L+GK+ D+K YV +A K+ER+ E+ +
Sbjct: 231 LMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKNERQQEINRKL 290
Query: 293 EQNMKEAA 300
E+ ++ A
Sbjct: 291 EERKRQKA 298
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 111/188 (59%), Gaps = 14/188 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + ++F +G I + V +D +G S+ +GFV+F++ + A A+E +N
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 172 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 218
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVAF P+ A A++ ++GK + +K LYVA A
Sbjct: 219 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALS 278
Query: 384 KEDRRARL 391
K +R+ +
Sbjct: 279 KNERQQEI 286
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +Y+ F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKD-EEGNSRGYGFVHFDSEEAARAAIEKV 170
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 171 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 230
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV F+N +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 231 LMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKNERQQEINR 288
>gi|33504434|emb|CAD44189.1| putative poly(A) binding protein [Mangifera indica]
Length = 130
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 89/107 (83%), Positives = 94/107 (87%)
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
EQ E ADKFQGANLY+KNLD SIDD+KLKQLFS FGSITSCKVMRDP+GISRGSGFVA
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQCR 399
F+TPEEASRA+LEMNGKMVV KPLYVALAQRKE RRARLQ Q R
Sbjct: 61 FTTPEEASRAILEMNGKMVVGKPLYVALAQRKEVRRARLQAQFSQIR 107
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 171
N+++KNLD +ID L FS FG+I SCKV D NG S+G GFV F E A +AI +
Sbjct: 14 ANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILE 73
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTT 215
+NG ++ K +YV RK+ R + +++F+ + ++ S
Sbjct: 74 MNGKMVVGKPLYVALAQRKEVRRARL-QAQFSQIRPVAMAPSVA 116
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 60/97 (61%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+K + N+Y+KNL S ++ L++ F ++G+ITS VMRD +G S+ GFV F ++A+
Sbjct: 9 DKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEAS 68
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
RA+ +NGK K YV AQ+K R L+ QF Q
Sbjct: 69 RAILEMNGKMVVGKPLYVALAQRKEVRRARLQAQFSQ 105
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A++F +LY+ +L+ ++ D +L LF+Q G + S +V RD S G G+V F+ +E
Sbjct: 8 ADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRD-PNGISRGSGFVAFTTPEE 66
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A+RA+ +N + GKP+ V + R
Sbjct: 67 ASRAILEMNGKMVVGKPLYVALAQR 91
>gi|300120548|emb|CBK20102.2| unnamed protein product [Blastocystis hominis]
Length = 534
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 126/356 (35%), Positives = 186/356 (52%), Gaps = 13/356 (3%)
Query: 44 FNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103
F + G+V + V D +T++S YGYV+FS A+EA +ALE NF L GK +RVM
Sbjct: 9 FKKYGKVRATHVVLDKNTKQSRCYGYVDFSTAEEAEKALEGANFNILKGKEMRVMRQQLR 68
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNE 162
+ GN+F+KNL + +K L D FSA+GNILSCKVA D G+S YG+V F +
Sbjct: 69 FKQTCNPKGNLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETGKSLHYGYVHFSDP 128
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
QK + +N ++ + +YV + K+ +DT S + YV N + TE+ L+
Sbjct: 129 NVTQKVLADMNKDVVEEGAMYVMEY-EKRMKDTS---SDWVTCYVANFPTTLTEDGLRDL 184
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-----DDKEWYVGK 277
FG+YGTI S + K GFV F N D A +AVE L + + YV +
Sbjct: 185 FGKYGTINSVYIGYKRYNPQKIQGFVTFANHDSAVKAVEGLKDQVITVEGAEPMVLYVNR 244
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
Q + ER + E+ KE ++ +G LY+ D +I E+L+++F +G+I SC +
Sbjct: 245 LQSREERASINQKILEEKKKEEVERTKGRFLYVGFGDQTITLERLREIFQAYGNIESCSI 304
Query: 338 MRDPSGIS-RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
RD + + GFV T E A A+ + L V LAQ +E+R L+
Sbjct: 305 ARDKNTKELKPFGFVCMDTTENAQNAIRAFRESHDLK--LKVELAQTREERAKMLK 358
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 130/289 (44%), Gaps = 22/289 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L+V +L +T+ +L D F+ G ++S +V D T +SL YGYV+FS+ + L
Sbjct: 78 NLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETGKSLHYGYVHFSDPNVTQKVLAD 137
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N + + VM + S ++ N + L D F +G I S +
Sbjct: 138 MNKDVVEEGAMYVMEYEKRMKDTSSDWVTCYVANFPTTLTEDGLRDLFGKYGTINSVYIG 197
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN-----DKQVYVGHFLRKQERDTEINK 199
K GFV F N +SA KA+E L ++ +YV ++ER + IN+
Sbjct: 198 YKRYNPQKIQGFVTFANHDSAVKAVEGLKDQVITVEGAEPMVLYVNRLQSREERAS-INQ 256
Query: 200 SKFTN-------------VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS-KCF 245
+YV ++ T E L++ F YG I S + RD + K K F
Sbjct: 257 KILEEKKKEEVERTKGRFLYVGFGDQTITLERLREIFQAYGNIESCSIARDKNTKELKPF 316
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
GFV + +++A A+ A ++ D + V AQ + ER LK + +Q
Sbjct: 317 GFVCMDTTENAQNAIRAF--RESHDLKLKVELAQTREERAKMLKERRKQ 363
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 19/182 (10%)
Query: 218 DLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276
DL++ F +YG + + V+ D + K S+C+G+V+F +++A +A+E N KE V
Sbjct: 4 DLEEEFKKYGKVRATHVVLDKNTKQSRCYGYVDFSTAEEAEKALEGANFNILKGKEMRVM 63
Query: 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
+ Q + ++ K NL++KNL D + +++L FS +G+I SCK
Sbjct: 64 RQQLRFKQTCNPK----------------GNLFVKNLPDLMTNKELLDKFSAYGNILSCK 107
Query: 337 VMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA-LAQRKEDRRARLQVC 394
V D +G S G+V FS P + L +MN +V +YV +R +D + C
Sbjct: 108 VAFDKETGKSLHYGYVHFSDPNVTQKVLADMNKDVVEEGAMYVMEYEKRMKDTSSDWVTC 167
Query: 395 LL 396
+
Sbjct: 168 YV 169
>gi|432114066|gb|ELK36113.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 230
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 125/176 (71%), Gaps = 1/176 (0%)
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+E L+ FG++G S VM D G SK FGFV+F+ +D +AV+ +NGK+ + K+ Y+
Sbjct: 3 DERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQIYI 62
Query: 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
+A K +E + EL+ +FE ++ A ++QG NLY+KNLDD ID+ L++ FSPFG+IT
Sbjct: 63 SRAHKTAEWQTELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTITGA 122
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
K M + G S G GFV FS+PEEA++A+ EMNG++V +KPL VALAQRKE+R+A L
Sbjct: 123 KFMME-GGPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHL 177
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 103/187 (55%), Gaps = 15/187 (8%)
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+D + L D F FG LS KV D G SKG+GFV F E QKA++++NG LN KQ+
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 183 YVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTI 229
Y+ + E TE+ + KF N+YVKNL + E LQK F +GTI
Sbjct: 61 YISRAHKTAEWQTEL-RCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTI 119
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
T A M +G G S+ FGFV F + ++A +AV +NG+ K V AQ+K ER+ L
Sbjct: 120 TGAKFMMEG-GPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHLT 178
Query: 290 HQFEQNM 296
+Q+ Q M
Sbjct: 179 NQYMQRM 185
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 25/192 (13%)
Query: 37 DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96
D +L DLF + G +SV+V D S G+G+V+F ++ +A++ +N LN K I
Sbjct: 3 DERLKDLFGKFGPALSVKVMMD-EGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQIY 61
Query: 97 VMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+ +H+ D + R G N+++KNLD ID L FS FG I
Sbjct: 62 ISRAHKTAEWQTELRCKFEHMNQDRATRYQGV-NLYVKNLDDGIDEGCLQKEFSPFGTIT 120
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
K + G S+G+GFV+F + E A KA+ ++NG ++ K + V RK+ER +
Sbjct: 121 GAKFMME-GGPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEER-----Q 174
Query: 200 SKFTNVYVKNLS 211
+ TN Y++ ++
Sbjct: 175 AHLTNQYMQRMA 186
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+DDE+LK LF FG S KVM D G S+G GFV+F E+ +A+ E+NGK + K +
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 377 YVALAQRKEDRRARLQ 392
Y++ A + + + L+
Sbjct: 61 YISRAHKTAEWQTELR 76
>gi|297830144|ref|XP_002882954.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
gi|297328794|gb|EFH59213.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
Length = 406
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 139/221 (62%), Gaps = 4/221 (1%)
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
L+G +++ K+++V F+ K ER +FTNVYV+NL E+ TE+ L + F +YG ++S
Sbjct: 35 LHGSMVDGKKLFVAKFINKDERAAMSWNQEFTNVYVENLIENVTEDILHRLFSQYGIVSS 94
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
VVMRDG G+S+ GFVNF + ++A +AVE L G++ K +VGKA +K ER LK
Sbjct: 95 VVVMRDGMGRSRGLGFVNFCHLENAKKAVEFLCGRQLGSKTLFVGKALRKDERMEMLKQH 154
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
F N A +N+Y+KNL +S++D +L+++F +G I S KVMR +G S+G GFV
Sbjct: 155 FRDN-SIAKPNMGWSNMYVKNLSESMNDTRLREIFGRYGQIVSAKVMRHENGRSKGFGFV 213
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
FS EE+ +A +N V KPL V + +RKED RL
Sbjct: 214 CFSNREESKQAKRYLN---VDGKPLVVRVTERKEDTLKRLH 251
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 109/191 (57%), Gaps = 15/191 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++++NL + + LH FS +G + S V D G+S+G GFV F + E+A+KA+E L
Sbjct: 67 NVYVENLIENVTEDILHRLFSQYGIVSSVVVMRDGMGRSRGLGFVNFCHLENAKKAVEFL 126
Query: 173 NGMLLNDKQVYVGHFLRKQE---------RDTEINKSK--FTNVYVKNLSESTTEEDLQK 221
G L K ++VG LRK E RD I K ++N+YVKNLSES + L++
Sbjct: 127 CGRQLGSKTLFVGKALRKDERMEMLKQHFRDNSIAKPNMGWSNMYVKNLSESMNDTRLRE 186
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
FG YG I SA VMR +G+SK FGFV F N +++ +A LN D K V ++K
Sbjct: 187 IFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLN---VDGKPLVVRVTERK 243
Query: 282 SERELELKHQF 292
E L+ HQ+
Sbjct: 244 -EDTLKRLHQY 253
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 95/165 (57%), Gaps = 16/165 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +L NVT+ L+ LF+Q G V SV V RD RS G G+VNF + + A +A+E
Sbjct: 66 TNVYVENLIENVTEDILHRLFSQYGIVSSVVVMRD-GMGRSRGLGFVNFCHLENAKKAVE 124
Query: 84 ML------NFTPLNGKPIR------VMYSH-RDPSLRKS--GAGNIFIKNLDKAIDHKAL 128
L + T GK +R ++ H RD S+ K G N+++KNL ++++ L
Sbjct: 125 FLCGRQLGSKTLFVGKALRKDERMEMLKQHFRDNSIAKPNMGWSNMYVKNLSESMNDTRL 184
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+ F +G I+S KV NG+SKG+GFV F N E +++A LN
Sbjct: 185 REIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLN 229
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 80/144 (55%), Gaps = 16/144 (11%)
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE-LELKHQFEQNMKEAADKFQGANL 308
++++ +AR+ AL+G D K+ +V K K ER + +F N+
Sbjct: 24 YDSAGVSARS--ALHGSMVDGKKLFVAKFINKDERAAMSWNQEF-------------TNV 68
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y++NL +++ ++ L +LFS +G ++S VMRD G SRG GFV F E A +A+ + G
Sbjct: 69 YVENLIENVTEDILHRLFSQYGIVSSVVVMRDGMGRSRGLGFVNFCHLENAKKAVEFLCG 128
Query: 369 KMVVSKPLYVALAQRKEDRRARLQ 392
+ + SK L+V A RK++R L+
Sbjct: 129 RQLGSKTLFVGKALRKDERMEMLK 152
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
G +++YV +L ++ D++L ++F + GQ+VS +V R RS G+G+V FSN +E+ +
Sbjct: 165 MGWSNMYVKNLSESMNDTRLREIFGRYGQIVSAKVMRH-ENGRSKGFGFVCFSNREESKQ 223
Query: 81 ALEMLNFTPLNGKPIRVMYSHR 102
A LN ++GKP+ V + R
Sbjct: 224 AKRYLN---VDGKPLVVRVTER 242
>gi|56971379|gb|AAH88337.1| Pabpc4 protein, partial [Rattus norvegicus]
Length = 415
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 85/134 (63%), Positives = 108/134 (80%), Gaps = 1/134 (0%)
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+I
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLY
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 378 VALAQRKEDRRARL 391
VALAQRKE+R+A L
Sbjct: 120 VALAQRKEERKAHL 133
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 86/143 (60%), Gaps = 15/143 (10%)
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSES 213
KA+E++NG ++ K ++VG +K ER E+ K KF N+Y+KNL ++
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAEL-KRKFEQLKQERISRYQGVNLYIKNLDDT 59
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW 273
+E L+K F +G+ITSA VM + DG+SK FGFV F + ++A +AV +NG+ K
Sbjct: 60 IDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 118
Query: 274 YVGKAQKKSERELELKHQFEQNM 296
YV AQ+K ER+ L +Q+ Q +
Sbjct: 119 YVALAQRKEERKAHLTNQYMQRV 141
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 63/99 (63%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD ID + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++
Sbjct: 50 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 108
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER K+ TN Y++ ++
Sbjct: 109 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 142
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+++ +LY+ +L+ + D +L F+ G + S +V L RS G+G+V FS+ +EA
Sbjct: 44 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEA 101
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD--KAIDHKALHDTF 132
+A+ +N + KP+ V + R RK+ N +++ + +A+ A+ + F
Sbjct: 102 TKAVTEMNGRIVGSKPLYVALAQRK-EERKAHLTNQYMQRVAGMRALPANAILNQF 156
>gi|47229360|emb|CAF99348.1| unnamed protein product [Tetraodon nigroviridis]
Length = 128
Score = 174 bits (440), Expect = 8e-41, Method: Composition-based stats.
Identities = 78/125 (62%), Positives = 100/125 (80%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAASYPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSC 141
NILSC
Sbjct: 124 NILSC 128
Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAASYPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITS 231
+F +G I S
Sbjct: 118 TFSAFGNILS 127
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 21/135 (15%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S V RD +S + +VNF+ DA RA++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+N FD + G+ + S+R+ L+ K N++IKNLD SID++
Sbjct: 72 MN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNIFIKNLDKSIDNK 113
Query: 321 KLKQLFSPFGSITSC 335
L FS FG+I SC
Sbjct: 114 ALYDTFSAFGNILSC 128
Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G+I S +V RD + S G +V F
Sbjct: 1 MNPSAASYPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>gi|429963232|gb|ELA42776.1| hypothetical protein VICG_00091 [Vittaforma corneae ATCC 50505]
Length = 528
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 189/345 (54%), Gaps = 31/345 (8%)
Query: 66 GYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGA-----GNIFIKNLD 120
Y +V F + ++A R +E N+T L+ + + +M + SG N+F+KN+
Sbjct: 92 SYAFVTFLSIEDAKRIVEKYNYTTLHDREMTLM-------ILTSGNVFPENANLFVKNIP 144
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
K K L++ F FG+I SCKV+ D NG+S+GYGFVQ++ ESA KAI L K
Sbjct: 145 KEYTTKKLYEIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIADLRDEKFEGK 204
Query: 181 QVYVGHF---LRKQER-DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
+ + F LR Q+ D+ + S FTNV+VKN S TE L+ +YG I S +
Sbjct: 205 TLSISRFDRSLRDQKHSDSSSSTSSFTNVFVKNFPSSLTEAKLKDILEKYGPICSIYLPL 264
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE-----------WYVGKAQKKSERE 285
+ + F VNFE ++DAA+AVE L+ K E +Y+ KA+++ ERE
Sbjct: 265 NEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFSLEECQDSSVATCPFYIQKAERRKERE 324
Query: 286 LELKHQFEQ-NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
++ Q E ++K K NLYI ++ ++ +++++ LFS FG+I S K+ + S
Sbjct: 325 ETIRKQLEALSLKGINSK---NNLYIAHIPETFSEDEIRDLFSKFGTIVSIKLQKTSSEN 381
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
++ G++ F TPEEA+ A M+G ++ + L ++ + K +RRA
Sbjct: 382 NKQFGYICFKTPEEAAAAFEAMDGTLLDNSKLRISFYKAKNERRA 426
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 141/296 (47%), Gaps = 40/296 (13%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L+V ++ T +LY++F G + S +V D S S GYG+V + + A +A+ L
Sbjct: 138 LFVKNIPKEYTTKKLYEIFKDFGSIASCKVSVD-SNGESRGYGFVQYETVESADKAIADL 196
Query: 86 NFTPLNGKPIRVMYSHRDPSLR----------KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
GK + + S D SLR S N+F+KN ++ L D +
Sbjct: 197 RDEKFEGKTLSI--SRFDRSLRDQKHSDSSSSTSSFTNVFVKNFPSSLTEAKLKDILEKY 254
Query: 136 GNILSCKVATDLNGQSKGYGF--VQFDNEESAQKAIEKLNGMLL------NDKQV----- 182
G I C + LN +S+ GF V F+ E A KA+E L+ + D V
Sbjct: 255 GPI--CSIYLPLNEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFSLEECQDSSVATCPF 312
Query: 183 YVGHFLRKQERDTEINK-----------SKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
Y+ R++ER+ I K SK N+Y+ ++ E+ +E++++ F ++GTI S
Sbjct: 313 YIQKAERRKEREETIRKQLEALSLKGINSK-NNLYIAHIPETFSEDEIRDLFSKFGTIVS 371
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
+ + +K FG++ F+ ++AA A EA++G D+ + + + K+ER E
Sbjct: 372 IKLQKTSSENNKQFGYICFKTPEEAAAAFEAMDGTLLDNSKLRISFYKAKNERRAE 427
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 121/256 (47%), Gaps = 35/256 (13%)
Query: 153 GYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV-----GHFLRKQERDTEINKSKFTNVYV 207
Y FV F + E A++ +EK N L+D+++ + G+ + N++V
Sbjct: 92 SYAFVTFLSIEDAKRIVEKYNYTTLHDREMTLMILTSGNVFPEN-----------ANLFV 140
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KN+ + T + L + F ++G+I S V D +G+S+ +GFV +E + A +A+ L +K
Sbjct: 141 KNIPKEYTTKKLYEIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIADLRDEK 200
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
F+ GK S + L+ Q + + F N+++KN S+ + KLK +
Sbjct: 201 FE------GKTLSISRFDRSLRDQKHSDSSSSTSSF--TNVFVKNFPSSLTEAKLKDILE 252
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-----------PL 376
+G I S + + G V F E+A++A+ ++ K + S P
Sbjct: 253 KYGPICSIYLPLNEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFSLEECQDSSVATCPF 312
Query: 377 YVALAQRKEDRRARLQ 392
Y+ A+R+++R ++
Sbjct: 313 YIQKAERRKEREETIR 328
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 84/192 (43%), Gaps = 19/192 (9%)
Query: 193 RDTEINKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
R I SK V NLS T+ +L F + M+ D + FV F
Sbjct: 40 RMVSIQHSKSLVTVRCGNLSPKTSIAELVALFSREPVAIEDIKMKKNDLIQSSYAFVTFL 99
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ +DA R VE N D+E + L + F +N ANL++K
Sbjct: 100 SIEDAKRIVEKYNYTTLHDREMTLMI--------LTSGNVFPEN----------ANLFVK 141
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N+ +KL ++F FGSI SCKV D +G SRG GFV + T E A +A+ ++ +
Sbjct: 142 NIPKEYTTKKLYEIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIADLRDEKF 201
Query: 372 VSKPLYVALAQR 383
K L ++ R
Sbjct: 202 EGKTLSISRFDR 213
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 97/198 (48%), Gaps = 26/198 (13%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+++V + +++T+++L D+ + G + S+ + + +G+ VNF A++AA+A+E
Sbjct: 231 TNVFVKNFPSSLTEAKLKDILEKYGPICSIYLPLN-EKSEPVGFACVNFEKAEDAAKAVE 289
Query: 84 MLNF-----------TPLNGKPIRVMYSHR----DPSLRK----------SGAGNIFIKN 118
L+ + + P + + R + ++RK + N++I +
Sbjct: 290 NLHNKHIFSLEECQDSSVATCPFYIQKAERRKEREETIRKQLEALSLKGINSKNNLYIAH 349
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
+ + + D FS FG I+S K+ + +K +G++ F E A A E ++G LL+
Sbjct: 350 IPETFSEDEIRDLFSKFGTIVSIKLQKTSSENNKQFGYICFKTPEEAAAAFEAMDGTLLD 409
Query: 179 DKQVYVGHFLRKQERDTE 196
+ ++ + + K ER E
Sbjct: 410 NSKLRISFYKAKNERRAE 427
>gi|302408078|ref|XP_003001874.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
gi|261359595|gb|EEY22023.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
Length = 555
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 133/242 (54%), Gaps = 51/242 (21%)
Query: 10 NVNGGGANANQFGTT------------SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR 57
NV G +A+ G T SLYVG+LE VT++ L++LF+ +G V S+RVCR
Sbjct: 35 NVEGAQGDADTAGPTPNSAVPQPQASASLYVGELEPQVTEAMLFELFSHIGPVASIRVCR 94
Query: 58 DLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIK 117
D TRRSLGY YVN++ + +ALE LN+T +NG+P R+M+S RDP+LRK+G GN+FIK
Sbjct: 95 DAVTRRSLGYAYVNYNTTSDGEKALEELNYTVINGRPCRIMWSQRDPALRKNGQGNVFIK 154
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVA----------------------TDLN------- 148
NLD AID+KALHDT S + K TD
Sbjct: 155 NLDVAIDNKALHDTISEGEDEDKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADK 214
Query: 149 ----------GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
G+SKG+GFV F N E A KA+ +N ++++K +YV RK R ++
Sbjct: 215 KDAKKGDKKLGKSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLE 274
Query: 199 KS 200
+S
Sbjct: 275 QS 276
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 48/231 (20%)
Query: 107 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESA 165
+ + ++++ L+ + L + FS G + S +V D + +S GY +V ++
Sbjct: 56 QPQASASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDG 115
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGE 225
+KA+E+LN ++N + + +RD + K+ NV++KNL + + L + E
Sbjct: 116 EKALEELNYTVINGRPCRI----MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTISE 171
Query: 226 ------------------YGTITSAVVMRDGD---------------------GKSKCFG 246
+ V D + GKSK FG
Sbjct: 172 GEDEDKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLGKSKGFG 231
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
FV F N +DA +AV +N + D+K YV AQ+K R K+Q EQ+++
Sbjct: 232 FVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVR----KNQLEQSIQ 278
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 56/232 (24%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV L TE L + F G + S V RD +S + +VN+ + D +A+E
Sbjct: 62 SLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEE 121
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI----- 317
LN + + + S+R+ L+ + N++IKNLD +I
Sbjct: 122 LNYTVINGRPCRI----MWSQRDPALRKNGQ------------GNVFIKNLDVAIDNKAL 165
Query: 318 --------DDEKLKQLFSPFGSITSCK----VMRDPS----------------------G 343
D++K+K+ + V ++ S G
Sbjct: 166 HDTISEGEDEDKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLG 225
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCL 395
S+G GFV FS PE+A++A+ +MN +M+ +KPLYVALAQRK+ R+ +L+ +
Sbjct: 226 KSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLEQSI 277
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEASRA 362
A+LY+ L+ + + L +LFS G + S +V RD ++R G +V ++T + +A
Sbjct: 61 ASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRD--AVTRRSLGYAYVNYNTTSDGEKA 118
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
L E+N ++ +P + +QR R
Sbjct: 119 LEELNYTVINGRPCRIMWSQRDPALR 144
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 191/374 (51%), Gaps = 23/374 (6%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L+VG+L ++ +L +LF G++V RV D T S GYG+V +S+ + AA A++
Sbjct: 229 TNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIK 288
Query: 84 MLNFTPLNGK--PIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+N + G+ +R+ + S ++ +++ NL + LHD F +G + S
Sbjct: 289 HMNGRMVEGRMLEVRLAGAPSSGSTKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQVTSV 348
Query: 142 KVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV--------GHFLRKQ- 191
KV D G SKGYGFV++ + + A AI +LNG L+ K++ V G Q
Sbjct: 349 KVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRVAAVSSSGSNTSVQA 408
Query: 192 --ERDTEINKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGF 247
E D ++ K +NVYV+NL + L F YG +TSA V D G SK +GF
Sbjct: 409 ISETDHQLTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGF 468
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
V F + DAA AV LNG + ++ V S E H + +KE +N
Sbjct: 469 VKFSDPHDAAHAVIELNGCLVEGRKILVRVRPPSSPVE---SHANNRTLKE----IDMSN 521
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+ N+ S++ KL +LF PFG IT V+ + S+G GFV F+ A+ A+ MN
Sbjct: 522 LYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMN 581
Query: 368 GKMVVSKPLYVALA 381
G ++ + + V +A
Sbjct: 582 GALIEGETISVRVA 595
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 118/400 (29%), Positives = 190/400 (47%), Gaps = 32/400 (8%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
M +V+ G +G + + + LYV +L + + +L+DLF GQV SV+V RD +
Sbjct: 299 MLEVRLAGAPSSG---STKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHA 355
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV---------------MYSHRDPS 105
T S GYG+V +S+ Q AA A+ LN + GK + V S D
Sbjct: 356 TGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQ 415
Query: 106 LRKS-GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
L K N++++NL ++ L + F +G + S KVA D +G SKGYGFV+F +
Sbjct: 416 LTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPH 475
Query: 164 SAQKAIEKLNGMLLNDKQVYV-----GHFLRKQERDTEINKSKFTNVYVKNLSESTTEED 218
A A+ +LNG L+ +++ V + + + + +N+YV N+ S +
Sbjct: 476 DAAHAVIELNGCLVEGRKILVRVRPPSSPVESHANNRTLKEIDMSNLYVCNIPSSMNKAK 535
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L + F +G IT A+V+ + SK +GFV F +S AA AV +NG + + V A
Sbjct: 536 LVELFLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVA 595
Query: 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVM 338
+ + A+ + LY+ NL ++ +KL LF PFG I +
Sbjct: 596 GLSPSVSSSVSQHSPHSEINASPEINNCRLYVTNLPQTMSADKLVSLFMPFGQIDRVVMY 655
Query: 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
+ S FV ++ A++AL M+G ++ K L V
Sbjct: 656 AEYS-------FVLYADINSAAKALKHMDGYLIEGKRLVV 688
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 145/282 (51%), Gaps = 5/282 (1%)
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQ 158
+H + L++ N+F+ NL ++ L + F FG I+ +V D G SKGYGFVQ
Sbjct: 217 AHDEGKLKEGNGTNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQ 276
Query: 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEED 218
+ + A +AI+ +NG ++ + + V L + + +YV NL E+
Sbjct: 277 YSDPRYAAEAIKHMNGRMVEGRMLEVR--LAGAPSSGSTKEMDMSKLYVCNLPLLLHEDK 334
Query: 219 LQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L F YG +TS VMRD G SK +GFV + + AA A+ LNG + K+ V
Sbjct: 335 LHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRV 394
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
A S + + + +N+Y++NL ++ +KL LF P+G +TS KV
Sbjct: 395 AAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKV 454
Query: 338 MRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D SGIS+G GFV FS P +A+ A++E+NG +V + + V
Sbjct: 455 AMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEGRKILV 496
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 93/375 (24%), Positives = 162/375 (43%), Gaps = 47/375 (12%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++LYV ++ +++ ++L +LF G++ V S S GYG+V F+++ AA A+
Sbjct: 520 SNLYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQ-SNNSSKGYGFVKFADSHCAAEAVA 578
Query: 84 MLNFTPLNGKPIRVMYS-------------------HRDPSLRKSGAGNIFIKNLDKAID 124
M+N + G+ I V + + P + +++ NL + +
Sbjct: 579 MMNGALIEGETISVRVAGLSPSVSSSVSQHSPHSEINASPEINNC---RLYVTNLPQTMS 635
Query: 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
L F FG I + + Y FV + + SA KA++ ++G L+ K++ V
Sbjct: 636 ADKLVSLFMPFGQIDRVVMYAE-------YSFVLYADINSAAKALKHMDGYLIEGKRLVV 688
Query: 185 ----------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
Q + + N+YV + + T E L + F YG I A
Sbjct: 689 KGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQIFCLYGEIVQAKK 748
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
G +G + + N+ AA A++ L+G + V A +E ++ + Q
Sbjct: 749 FDAG------YGMIRYANASSAAAAIDHLDGYQIGGSTLVVRVAGLPAESDVATFARTPQ 802
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAF 353
+ NLY+ L + +KL +LF P G IT KV+ D +G+S+G GFV F
Sbjct: 803 TPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRF 862
Query: 354 STPEEASRALLEMNG 368
+ A+ A+ MNG
Sbjct: 863 ADAYSAATAITHMNG 877
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 117/271 (43%), Gaps = 41/271 (15%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYV +L ++ +L LF GQ+ V + + Y +V +++ AA+AL+ +
Sbjct: 625 LYVTNLPQTMSADKLVSLFMPFGQIDRVVMYAE--------YSFVLYADINSAAKALKHM 676
Query: 86 NFTPLNGKPIRVMYSHRDPS------LRKSGA--------GNIFIKNLDKAIDHKALHDT 131
+ + GK + V S P+ +SG+ N+++ + A+ + L
Sbjct: 677 DGYLIEGKRLVVKGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQI 736
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV------- 184
F +G I+ K GYG +++ N SA AI+ L+G + + V
Sbjct: 737 FCLYGEIVQAKKF------DAGYGMIRYANASSAAAAIDHLDGYQIGGSTLVVRVAGLPA 790
Query: 185 ----GHFLR-KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG- 238
F R Q E + TN+YV L T + L + F G IT A V+ D
Sbjct: 791 ESDVATFARTPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKF 850
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFD 269
G SK FGFV F ++ AA A+ +NG D
Sbjct: 851 TGVSKGFGFVRFADAYSAATAITHMNGYPLD 881
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 7/99 (7%)
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRAL 363
G NL++ NL S+ KL +LF PFG I +V+ D +G S+G GFV +S P A+ A+
Sbjct: 228 GTNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAI 287
Query: 364 LEMNGKMVVSKPLYVALA------QRKEDRRARLQVCLL 396
MNG+MV + L V LA KE ++L VC L
Sbjct: 288 KHMNGRMVEGRMLEVRLAGAPSSGSTKEMDMSKLYVCNL 326
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G Q T+LYVG L VT +L +LF GQ+ +V D T S G+G+V F++
Sbjct: 805 GNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRFAD 864
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPS 105
A AA A+ +N PL+G + V + PS
Sbjct: 865 AYSAATAITHMNGYPLDGHMLAVRTAGVQPS 895
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 30/200 (15%)
Query: 6 AQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 65
AQ G + +LYVG + + VT QL +F G++V + +
Sbjct: 699 AQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQIFCLYGEIVQAK-------KFDA 751
Query: 66 GYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS-----------HRDPSL-----RKS 109
GYG + ++NA AA A++ L+ + G + V + R P R+
Sbjct: 752 GYGMIRYANASSAAAAIDHLDGYQIGGSTLVVRVAGLPAESDVATFARTPQTPGNEHRQI 811
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168
N+++ L + L + F G I KV D G SKG+GFV+F + SA A
Sbjct: 812 DMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRFADAYSAATA 871
Query: 169 IEKLNGMLLNDKQVYVGHFL 188
I +NG L+ GH L
Sbjct: 872 ITHMNGYPLD------GHML 885
>gi|402466517|gb|EJW01988.1| hypothetical protein EDEG_03560 [Edhazardia aedis USNM 41457]
Length = 571
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 152/252 (60%), Gaps = 7/252 (2%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD--LSTRRSLGYGYVNFSNAQEAARAL 82
++YVGDL D+ L+ LF+ G V+S+++ + L + SL Y YVN+ N+ A +A+
Sbjct: 7 TVYVGDLNPLTLDTDLHRLFSTQGTVLSIKMIHNPNLESTGSLCYAYVNYENSDCALKAV 66
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLR--KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
+ LNF L+G IRVM ++ +L+ K G NI +KNL + D+K L+DTFS FG+I+S
Sbjct: 67 QNLNFAELHGTQIRVMLYNKQKNLKGQKIGKYNIIVKNLPVSCDNKTLYDTFSVFGDIIS 126
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
KVA D + KG+GFV + ++ S +KAI +G +N + V FLRK++R E +K
Sbjct: 127 SKVAVDSENKPKGFGFVCYKDKMSVKKAILLAHGTNMNGNMLKVAKFLRKEDRVVEKDKI 186
Query: 201 K--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+ FTN Y+KN +EE L++ YG ITS VV R+ D K F F NF++ A +
Sbjct: 187 EELFTNCYIKNFG-GLSEEQLKEICANYGEITSFVVPRNADNSLKGFAFCNFKDHVSAKK 245
Query: 259 AVEALNGKKFDD 270
A+E L+ +D
Sbjct: 246 AIEDLHDLSIED 257
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 126/257 (49%), Gaps = 16/257 (6%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKG---YGFVQFDNEESAQKAIE 170
+++ +L+ LH FS G +LS K+ + N +S G Y +V ++N + A KA++
Sbjct: 8 VYVGDLNPLTLDTDLHRLFSTQGTVLSIKMIHNPNLESTGSLCYAYVNYENSDCALKAVQ 67
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN L+ Q+ V L ++++ + K N+ VKNL S + L +F +G I
Sbjct: 68 NLNFAELHGTQIRV--MLYNKQKNLKGQKIGKYNIIVKNLPVSCDNKTLYDTFSVFGDII 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ V D + K K FGFV +++ +A+ +G + V K +K +R +E K
Sbjct: 126 SSKVAVDSENKPKGFGFVCYKDKMSVKKAILLAHGTNMNGNMLKVAKFLRKEDRVVE-KD 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ E+ N YIKN + +E+LK++ + +G ITS V R+ +G F
Sbjct: 185 KIEELF---------TNCYIKNFG-GLSEEQLKEICANYGEITSFVVPRNADNSLKGFAF 234
Query: 351 VAFSTPEEASRALLEMN 367
F A +A+ +++
Sbjct: 235 CNFKDHVSAKKAIEDLH 251
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 105/404 (25%), Positives = 185/404 (45%), Gaps = 48/404 (11%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+ G ++ V +L + + LYD F+ G ++S +V D S + G+G+V + +
Sbjct: 94 KIGKYNIIVKNLPVSCDNKTLYDTFSVFGDIISSKVAVD-SENKPKGFGFVCYKDKMSVK 152
Query: 80 RALEMLNFTPLNGKPIRVMYSHR--DPSLRKSGA----GNIFIKNLDKAIDHKALHDTFS 133
+A+ + + T +NG ++V R D + K N +IKN + + L + +
Sbjct: 153 KAILLAHGTNMNGNMLKVAKFLRKEDRVVEKDKIEELFTNCYIKNFG-GLSEEQLKEICA 211
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+G I S V + + KG+ F F + SA+KAIE L+ + + D + K+
Sbjct: 212 NYGEITSFVVPRNADNSLKGFAFCNFKDHVSAKKAIEDLHDLSIEDICEKFDIKISKRLS 271
Query: 194 DTEINKSKFTNVYVK-------------NLSEST---TEEDLQKSFGEYGTITSAVVMRD 237
D E ++K N K N ES T D QK + ++ + +
Sbjct: 272 DAEGEENKNLNSSNKYKLSDDESSSTSENKEESKGKKTNIDDQKEDLKSENESNNEISNN 331
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF-EQNM 296
GKS NS D A E L ++ +Y+ +AQ + ER H+F ++ +
Sbjct: 332 NTGKSN-----ESTNSSDLNAAFENLKITTVEN--FYIQRAQTRQER-----HEFLKEFI 379
Query: 297 KEAADKFQG--ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF--VA 352
K+AA++ NLYI L + ++ + ++FS G+IT+ K+ D I+ G F +
Sbjct: 380 KKAAEENLSYKRNLYITTLPPTASEKDVLEIFSKHGTITNFKLKSD---INTGLKFCYIC 436
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVAL----AQRKEDRRARLQ 392
+ TPEEA AL N ++ L V+ +R+ED+ A+++
Sbjct: 437 YKTPEEALIALERGNETILDGHKLNVSFFKTKKERQEDKIAKIE 480
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 17/186 (9%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK---CFGFVNFENSDDAARAVE 261
VYV +L+ T + DL + F GT+ S ++ + + +S C+ +VN+ENSD A +AV+
Sbjct: 8 VYVGDLNPLTLDTDLHRLFSTQGTVLSIKMIHNPNLESTGSLCYAYVNYENSDCALKAVQ 67
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN + + V K ++N+K K N+ +KNL S D++
Sbjct: 68 NLNFAELHGTQIRVMLYNK------------QKNLK--GQKIGKYNIIVKNLPVSCDNKT 113
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L FS FG I S KV D +G GFV + +A+L +G + L VA
Sbjct: 114 LYDTFSVFGDIISSKVAVDSENKPKGFGFVCYKDKMSVKKAILLAHGTNMNGNMLKVAKF 173
Query: 382 QRKEDR 387
RKEDR
Sbjct: 174 LRKEDR 179
>gi|320581035|gb|EFW95257.1| polyadenylate-binding protein [Ogataea parapolymorpha DL-1]
Length = 541
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 178/351 (50%), Gaps = 66/351 (18%)
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESA 165
L+K GN++++ L L FS +G ++SCK+ D G SKGYGF+ F + A
Sbjct: 89 LKKQLPGNLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYDDFGVSKGYGFINFADRIEA 148
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
QKAI+ LNG+ ++ ++V H + K++R + E+ K K+TN+YVKN + T+E L + F
Sbjct: 149 QKAIDNLNGVNVDGNHLFVNHHISKRDRLKELEMRKLKYTNLYVKNFPDDLTKEKLAQVF 208
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY---VGKAQK 280
G+YG + S + + ++ + F+NF++ +DA RA E L+G F+ Y +GKA++
Sbjct: 209 GQYGDVESVFLPQGTGNHNRGYAFINFKSHEDAVRAQENLDG--FEIAPGYRLQLGKAER 266
Query: 281 KSER-----------ELELKHQFEQNMKE--------------------------AADKF 303
+ +R L + Q+ E A ++
Sbjct: 267 RKDRMQNQMNSYKPNYLPFQPQYMPPQPEHSNNLYPSFIVSPDSNLISTATGLPIAGPQY 326
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-------------------GI 344
Q +NLYI +L D+ L +LF+PFG I S K+M P G
Sbjct: 327 QDSNLYIIHLPLEFKDQDLYELFAPFGQIMSAKIMTYPPNDSAVIDEGEEDTESKSREGR 386
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMV-VSKPLYVALAQRKEDR--RARLQ 392
SRG GFV F+ P +AS+AL+ MNG V S L V+ AQRKE++ + RL
Sbjct: 387 SRGFGFVCFNKPLDASKALVSMNGYRVDDSHVLEVSFAQRKENKFEKGRLH 437
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 30/272 (11%)
Query: 124 DHKALHDTFSAFGNI-----LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
D L + + F N ++C+V N +S F +F+ ++ +K E L +
Sbjct: 21 DSAVLENLLAVFKNTYNYPEVNCEVLKG-NSESPKTVFARFEEKDHFEKFKEFLEQRDIE 79
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
+ V H L+KQ N+YV+ L +TT +DL + F YG + S ++ D
Sbjct: 80 YEHVATEHELKKQLP---------GNLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYDD 130
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER--ELELKHQFEQNM 296
G SK +GF+NF + +A +A++ LNG D +V K +R ELE++
Sbjct: 131 FGVSKGYGFINFADRIEAQKAIDNLNGVNVDGNHLFVNHHISKRDRLKELEMR------- 183
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
K + NLY+KN D + EKL Q+F +G + S + + +RG F+ F +
Sbjct: 184 -----KLKYTNLYVKNFPDDLTKEKLAQVFGQYGDVESVFLPQGTGNHNRGYAFINFKSH 238
Query: 357 EEASRALLEMNG-KMVVSKPLYVALAQRKEDR 387
E+A RA ++G ++ L + A+R++DR
Sbjct: 239 EDAVRAQENLDGFEIAPGYRLQLGKAERRKDR 270
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 143/348 (41%), Gaps = 78/348 (22%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYV L T L +F++ G +VS ++ D S GYG++NF++ EA +A++
Sbjct: 96 NLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYD-DFGVSKGYGFINFADRIEAQKAIDN 154
Query: 85 LNFTPLNGKPIRVMY--SHRDP----SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
LN ++G + V + S RD +RK N+++KN + + L F +G++
Sbjct: 155 LNGVNVDGNHLFVNHHISKRDRLKELEMRKLKYTNLYVKNFPDDLTKEKLAQVFGQYGDV 214
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-------------------LLND 179
S + ++GY F+ F + E A +A E L+G + N
Sbjct: 215 ESVFLPQGTGNHNRGYAFINFKSHEDAVRAQENLDGFEIAPGYRLQLGKAERRKDRMQNQ 274
Query: 180 KQVYVGHFLRKQERDTEINKSKFTNVYV-------KNLSESTT----------------- 215
Y ++L Q + N+Y NL + T
Sbjct: 275 MNSYKPNYLPFQPQYMPPQPEHSNNLYPSFIVSPDSNLISTATGLPIAGPQYQDSNLYII 334
Query: 216 -------EEDLQKSFGEYGTITSAVVM-------------------RDGDGKSKCFGFVN 249
++DL + F +G I SA +M + +G+S+ FGFV
Sbjct: 335 HLPLEFKDQDLYELFAPFGQIMSAKIMTYPPNDSAVIDEGEEDTESKSREGRSRGFGFVC 394
Query: 250 FENSDDAARAVEALNGKKFDDKEWY-VGKAQKKSER-ELELKHQFEQN 295
F DA++A+ ++NG + DD V AQ+K + E H + QN
Sbjct: 395 FNKPLDASKALVSMNGYRVDDSHVLEVSFAQRKENKFEKGRLHHYNQN 442
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 73/131 (55%), Gaps = 3/131 (2%)
Query: 267 KFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLF 326
+F++K+ + + +R++E +H ++ E + G NLY++ L + + L ++F
Sbjct: 59 RFEEKDHFEKFKEFLEQRDIEYEHVATEH--ELKKQLPG-NLYVRGLLPTTTSDDLVRIF 115
Query: 327 SPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
S +G++ SCK++ D G+S+G GF+ F+ EA +A+ +NG V L+V K D
Sbjct: 116 SRYGALVSCKIIYDDFGVSKGYGFINFADRIEAQKAIDNLNGVNVDGNHLFVNHHISKRD 175
Query: 387 RRARLQVCLLQ 397
R L++ L+
Sbjct: 176 RLKELEMRKLK 186
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 95/246 (38%), Gaps = 74/246 (30%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LYV + ++T +L +F Q G V SV + + + + GY ++NF + ++A RA E
Sbjct: 188 TNLYVKNFPDDLTKEKLAQVFGQYGDVESVFLPQG-TGNHNRGYAFINFKSHEDAVRAQE 246
Query: 84 ML--------------------------------NFTPLNGKPIRVMYSH---------- 101
L N+ P + + H
Sbjct: 247 NLDGFEIAPGYRLQLGKAERRKDRMQNQMNSYKPNYLPFQPQYMPPQPEHSNNLYPSFIV 306
Query: 102 -RDPSLRKSGAG-----------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT---- 145
D +L + G N++I +L + L++ F+ FG I+S K+ T
Sbjct: 307 SPDSNLISTATGLPIAGPQYQDSNLYIIHLPLEFKDQDLYELFAPFGQIMSAKIMTYPPN 366
Query: 146 ---------------DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
G+S+G+GFV F+ A KA+ +NG ++D V F ++
Sbjct: 367 DSAVIDEGEEDTESKSREGRSRGFGFVCFNKPLDASKALVSMNGYRVDDSHVLEVSFAQR 426
Query: 191 QERDTE 196
+E E
Sbjct: 427 KENKFE 432
>gi|14571650|emb|CAC42811.1| Poly(A)-binding protein cytoplasmic 5 [Cricetulus griseus]
Length = 177
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL VT+ LY F G + R+CRD T LGYGYVNF +A AL +NF
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIK+LDK+ID++ L FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
NG SKGY +V FD+ +A +AI +NG+ LN++QVYV
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 18/173 (10%)
Query: 207 VKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEALNG 265
V +L TE+ L K F G + + RD S +G+VNF DA A+ +N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 266 KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQL 325
+ K + + +Q K N++IK+LD SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLR----------------KSGVGNIFIKHLDKSIDNRTLFYL 125
Query: 326 FSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
FS FG+I SCKV+ D +G S+G +V F + A+RA+ MNG + ++ +YV
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR-GSGFVAFSTPEEASRALLEMNG 368
+ +L + ++ L + F P G + ++ RDP S G G+V F P +A AL MN
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 369 KMVVSKPLYVALAQRKEDR 387
++ KP + +Q +DR
Sbjct: 82 DLINGKPFRLMWSQ-PDDR 99
>gi|167534320|ref|XP_001748838.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772800|gb|EDQ86448.1| predicted protein [Monosiga brevicollis MX1]
Length = 514
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 182/358 (50%), Gaps = 17/358 (4%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SL + L T+SQL +LF +G S+ + RD + + LG+GYVNF + A A+
Sbjct: 10 SASLRIDHLPETATESQLAELFGAIGDFKSIHIIRDSISNKPLGHGYVNFEDVDSAIEAI 69
Query: 83 EMLNFTPLNG----KPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
++L+ L G K I + ++ P+ + +G +F+KNL + +D+K + DTF++ G
Sbjct: 70 KVLDGMDLTGGNDDKGISLSFTPSQPASSAASSGTLFVKNLAEDVDNKTIFDTFASIGAP 129
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
S KV T G+S+G+ V +D+ + AQ+A+++L G+++N K + + + + E
Sbjct: 130 SSAKVMTTAEGKSRGFAIVHYDDPQLAQRALDELEGVVVNGKNIRLERYQTGAQLKEE-- 187
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
S+ VY+ L T++ L +G++ S V + D FV E+ R
Sbjct: 188 -SRKRTVYLAGLPHEVTDKQLIDLLSPFGSVIS-VKLYPKDKDRNPVAFVTMEDEQAVLR 245
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AVE LNG F+ + V + Q ++ + ++E D A LY++N+ + +
Sbjct: 246 AVEKLNGGSFERQRITVAQLQARNPATQSSGPTSARQVEETKD----ATLYVRNIYEDVQ 301
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL-----LEMNGKMV 371
D L + F FG ++ + R +G +RG FV F PE+ + AL LE+ G V
Sbjct: 302 DSDLSEAFGVFGPVSRVTIPRSANGDTRGFAFVVFENPEDRAHALAAGNMLEVGGGKV 359
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 25/196 (12%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++ + +L E+ TE L + FG G S ++RD K G+VNFE+ D A A++
Sbjct: 12 SLRIDHLPETATESQLAELFGAIGDFKSIHIIRDSISNKPLGHGYVNFEDVDSAIEAIKV 71
Query: 263 LNGKKF----DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
L+G DDK + F + ++ G L++KNL + +D
Sbjct: 72 LDGMDLTGGNDDKGISL---------------SFTPSQPASSAASSG-TLFVKNLAEDVD 115
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL-- 376
++ + F+ G+ +S KVM G SRG V + P+ A RAL E+ G +V K +
Sbjct: 116 NKTIFDTFASIGAPSSAKVMTTAEGKSRGFAIVHYDDPQLAQRALDELEGVVVNGKNIRL 175
Query: 377 --YVALAQRKEDRRAR 390
Y AQ KE+ R R
Sbjct: 176 ERYQTGAQLKEESRKR 191
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 14/180 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++Y+ L VTD QL DL + G V+SV++ R + + V + Q RA+E
Sbjct: 192 TVYLAGLPHEVTDKQLIDLLSPFGSVISVKLYPKDKDRNPVAF--VTMEDEQAVLRAVEK 249
Query: 85 LNFTPLNGKPIRV-MYSHRDPSLRKSGA-----------GNIFIKNLDKAIDHKALHDTF 132
LN + I V R+P+ + SG ++++N+ + + L + F
Sbjct: 250 LNGGSFERQRITVAQLQARNPATQSSGPTSARQVEETKDATLYVRNIYEDVQDSDLSEAF 309
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
FG + + NG ++G+ FV F+N E A+ N + + +V + K+E
Sbjct: 310 GVFGPVSRVTIPRSANGDTRGFAFVVFENPEDRAHALAAGNMLEVGGGKVQYSAYRTKEE 369
>gi|331243001|ref|XP_003334145.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313135|gb|EFP89726.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 149/268 (55%), Gaps = 11/268 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAARALE 83
S+YVGDL AN+T+ +L +F+Q V+SV++ S + Y Y+ +S+A + A+
Sbjct: 29 SVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKGPRAYAYIAYSSADKVDEAIR 88
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
N T GKP RVM R ++ N+F+++L A+ A HDTF+ FG ILS ++
Sbjct: 89 EYNHTKFAGKPCRVMKPKRG-IVKGPPEANVFVQDLPLALSALAFHDTFAEFGEILSSRL 147
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN----DKQVYVGHFLRKQERDTEINK 199
+ D SKGYGF+Q+ E AQ AI + NG LL+ +K + F++K + ++
Sbjct: 148 SVDRENVSKGYGFIQYATVEQAQAAIAETNGSLLDVAGGEKPIRTSIFVKKDAPSSPTSR 207
Query: 200 S---KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+ +F N++ KNL T E + ++ +YG ITSAV+ D DGK F +F+N DA
Sbjct: 208 AAAREFKNLFFKNLPADITLEAFKATWSKYGVITSAVLTVDEDGKPTGTAFASFQNHSDA 267
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSER 284
R ++A K D E Y +A K+ER
Sbjct: 268 VRVIKATQRKGPD--EVYAVRALSKAER 293
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 14/254 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKV---ATDLNGQSKGYGFVQFDNEESAQKAI 169
++++ +L I + L FS +LS ++ + + G + Y ++ + + + +AI
Sbjct: 29 SVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKGP-RAYAYIAYSSADKVDEAI 87
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
+ N K V K +R + NV+V++L + + +F E+G I
Sbjct: 88 REYNHTKFAGKPCRV----MKPKRGI-VKGPPEANVFVQDLPLALSALAFHDTFAEFGEI 142
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S+ + D + SK +GF+ + + A A+ NG D V +K + +K
Sbjct: 143 LSSRLSVDRENVSKGYGFIQYATVEQAQAAIAETNGSLLD-----VAGGEKPIRTSIFVK 197
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+ A + NL+ KNL I E K +S +G ITS + D G G+
Sbjct: 198 KDAPSSPTSRAAAREFKNLFFKNLPADITLEAFKATWSKYGVITSAVLTVDEDGKPTGTA 257
Query: 350 FVAFSTPEEASRAL 363
F +F +A R +
Sbjct: 258 FASFQNHSDAVRVI 271
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVV---MRDGDGKSKCFGFVNFENSDDAARAV 260
+VYV +L + TEE+L K F + + S + R G + + ++ + ++D A+
Sbjct: 29 SVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKGP-RAYAYIAYSSADKVDEAI 87
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
N KF K R ++ K + EA N+++++L ++
Sbjct: 88 REYNHTKFAGKPC----------RVMKPKRGIVKGPPEA-------NVFVQDLPLALSAL 130
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
F+ FG I S ++ D +S+G GF+ ++T E+A A+ E NG ++
Sbjct: 131 AFHDTFAEFGEILSSRLSVDRENVSKGYGFIQYATVEQAQAAIAETNGSLL 181
>gi|47229361|emb|CAF99349.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 115/157 (73%), Gaps = 10/157 (6%)
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
M D GKS+ FGFV+FE +DA +A NG F + W QKK ER+ ELK +FEQ
Sbjct: 1 MTDDSGKSRGFGFVSFERHEDAQKAD---NG--FLKENWI----QKKVERQAELKRKFEQ 51
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS
Sbjct: 52 MKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLE-GGRSKGFGFVCFS 110
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 111 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 147
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 96/165 (58%), Gaps = 24/165 (14%)
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF-- 202
TD +G+S+G+GFV F+ E AQKA NG L K+ ++ +K ER E+ K KF
Sbjct: 2 TDDSGKSRGFGFVSFERHEDAQKAD---NGFL---KENWIQ---KKVERQAEL-KRKFEQ 51
Query: 203 -----------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
N+YVKNL + +E L+K F +GTITSA VM +G G+SK FGFV F
Sbjct: 52 MKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEG-GRSKGFGFVCFS 110
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+ ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 111 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 155
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KNLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++
Sbjct: 64 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLE-GGRSKGFGFVCFSSPEEATKAVTEM 122
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER ++ TN Y++ ++
Sbjct: 123 NGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 156
>gi|396082305|gb|AFN83915.1| polyadenylate-binding protein 2 [Encephalitozoon romaleae SJ-2008]
Length = 415
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/268 (38%), Positives = 154/268 (57%), Gaps = 14/268 (5%)
Query: 107 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQ 166
R GNIF+KNL ++ K L D FS FG I+SCKVAT G+SKGYGFVQF +++A+
Sbjct: 6 RPPETGNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKKAAK 65
Query: 167 KAIE---KLNGMLLNDKQVYVGHFLRKQER-DTEINKSKFTNVYVKNLSESTTEEDLQKS 222
K I+ LNG++L ++ V + ++ +++ + FTN ++KN TTE++L +
Sbjct: 66 KVIKNFNNLNGLMLGGNKIAVELYNPDMKKGESKKVSTMFTNCFIKNFPVDTTEKELLEL 125
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK-KFDD-----KEWYVG 276
YG +TS DGK K F F NFE+ + A A+ L+G FD + +Y+
Sbjct: 126 LVRYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAINNLHGAFPFDSSKDGGEPFYIQ 185
Query: 277 KAQKKSERELELKHQFEQ-NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
K Q+K ER EL+ FEQ +M+ + + NLYI N+ + E+L +F FGSITS
Sbjct: 186 KGQRKEERAEELRKMFEQLSMQGQSYR---KNLYITNIPEGFGAEELNNIFKEFGSITSM 242
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRAL 363
V D + + ++ +STPEEAS A+
Sbjct: 243 SVGIDGANSQKQYAYICYSTPEEASIAV 270
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 130/288 (45%), Gaps = 29/288 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T +++V +L + T L D F+ G++VS +V +S GYG+V F + A + +
Sbjct: 10 TGNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVA-TTPQGKSKGYGFVQFKEKKAAKKVI 68
Query: 83 EMLNFTPLNGKPI---RVMYSHRDPSLRKSGA-------GNIFIKNLDKAIDHKALHDTF 132
+ NF LNG + ++ +P ++K + N FIKN K L +
Sbjct: 69 K--NFNNLNGLMLGGNKIAVELYNPDMKKGESKKVSTMFTNCFIKNFPVDTTEKELLELL 126
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND------KQVYVGH 186
+G + S +G+ KG+ F F++ ESA AI L+G D + Y+
Sbjct: 127 VRYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAINNLHGAFPFDSSKDGGEPFYIQK 186
Query: 187 FLRKQERDTEINK----------SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
RK+ER E+ K S N+Y+ N+ E E+L F E+G+ITS V
Sbjct: 187 GQRKEERAEELRKMFEQLSMQGQSYRKNLYITNIPEGFGAEELNNIFKEFGSITSMSVGI 246
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
DG K + ++ + ++A+ AVE N D V + K ER
Sbjct: 247 DGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVSYFKNKLER 294
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 25/220 (11%)
Query: 188 LRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
+RK ER E N++VKNL ES T +DL +F +G I S V GKSK +GF
Sbjct: 1 MRKDERPPETG-----NIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGF 55
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK---FQ 304
V F+ A + ++ N G ++ +EL + +MK+ K
Sbjct: 56 VQFKEKKAAKKVIKNFNNLN--------GLMLGGNKIAVEL---YNPDMKKGESKKVSTM 104
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
N +IKN +++L +L +G +TS G +G F F + E A A+
Sbjct: 105 FTNCFIKNFPVDTTEKELLELLVRYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAIN 164
Query: 365 EMNGKMVV------SKPLYVALAQRKEDRRARLQVCLLQC 398
++G +P Y+ QRKE+R L+ Q
Sbjct: 165 NLHGAFPFDSSKDGGEPFYIQKGQRKEERAEELRKMFEQL 204
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 23/194 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAARAL 82
T+ ++ + + T+ +L +L + G+V S+ +D + G+ + NF + + A A+
Sbjct: 106 TNCFIKNFPVDTTEKELLELLVRYGKVTSLYFPIKD--DGKPKGFAFANFESHESALNAI 163
Query: 83 EMLNFT-PLN-----GKPIRVMYSHRDPS----LRK----------SGAGNIFIKNLDKA 122
L+ P + G+P + R LRK S N++I N+ +
Sbjct: 164 NNLHGAFPFDSSKDGGEPFYIQKGQRKEERAEELRKMFEQLSMQGQSYRKNLYITNIPEG 223
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+ L++ F FG+I S V D K Y ++ + E A A+E+ N + L+ ++
Sbjct: 224 FGAEELNNIFKEFGSITSMSVGIDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRL 283
Query: 183 YVGHFLRKQERDTE 196
V +F K ER E
Sbjct: 284 QVSYFKNKLERMKE 297
>gi|269859758|ref|XP_002649603.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
gi|220066966|gb|EED44435.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
Length = 484
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 114/351 (32%), Positives = 192/351 (54%), Gaps = 22/351 (6%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGD+ N T ++L ++F + V ++ + + L+ + + +V F +A A A++
Sbjct: 23 IHVGDISLNTTANELKEVFKGLN-VTNIIMKKTLNGQ--YAFAFVKFDSANAAQEAVQKY 79
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N+T LNGK I + S D + S + NIF+ N+ + K L + F FG +LSCK++
Sbjct: 80 NYTMLNGKEILLTIS--DTQFKYSQSANIFVNNIPTDMSAKDLEEIFKNFGPVLSCKISR 137
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF-LRKQERDTEINKSKFTN 204
G+SKGYG+V + N +SA+KA+ + +N+ ++V + +K R++E NK+ FTN
Sbjct: 138 TSEGKSKGYGYVMYKNLKSAKKAVTNCQNVKINENILFVDFYNPQKSARNSE-NKA-FTN 195
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+ KN + TE +L+ +YG IT+ DGK F VN+ + + A RA++ L+
Sbjct: 196 CFCKNFPPNYTEAELKNLLKKYGEITTIYFPTKSDGKPVGFACVNYAHPESAVRAIDELH 255
Query: 265 GK------------KFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
K KF + +Y+ K +KK ERE LK F N +K + NL+I+N
Sbjct: 256 NKQIFNNNQMQKDTKFAIEPFYIQKNEKKKEREQILK-SFYGNSVGFRNKLK-RNLFIQN 313
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
+ S +++L ++ FG+IT K+ D + G+V +ST EEA+ AL
Sbjct: 314 VPTSFSEDELLEILKKFGNITDFKLKLDTLHPEKQFGYVCYSTIEEAAVAL 364
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 27/213 (12%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N N+ T+ + + N T+++L +L + G++ ++ S + +G+
Sbjct: 180 NPQKSARNSENKAFTNCFCKNFPPNYTEAELKNLLKKYGEITTIYFPTK-SDGKPVGFAC 238
Query: 70 VNFSNAQEAARALEMLNF------------TPLNGKPIRVMYSHRDPS---LRKSGAGN- 113
VN+++ + A RA++ L+ T +P + + + + KS GN
Sbjct: 239 VNYAHPESAVRAIDELHNKQIFNNNQMQKDTKFAIEPFYIQKNEKKKEREQILKSFYGNS 298
Query: 114 ----------IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEE 163
+FI+N+ + L + FGNI K+ D K +G+V + E
Sbjct: 299 VGFRNKLKRNLFIQNVPTSFSEDELLEILKKFGNITDFKLKLDTLHPEKQFGYVCYSTIE 358
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
A A+EK +LL+ Q+ + + K ER TE
Sbjct: 359 EAAVALEKSKQVLLDGNQLELSIYKSKYERSTE 391
>gi|119612220|gb|EAW91814.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 105/129 (81%), Gaps = 1/129 (0%)
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 1 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 60
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 61 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 119
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 120 RKEERQAHL 128
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEED 218
+NG LN KQ+YVG +K ER TE+ K KF N+YVKNL + +E
Sbjct: 1 MNGKELNGKQIYVGRAQKKVERQTEL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 59
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L+K F +GTITSA VM +G G+SK FGFV F + ++A +AV +NG+ K YV A
Sbjct: 60 LRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 118
Query: 279 QKKSERELELKHQFEQNM 296
Q+K ER+ L +Q+ Q M
Sbjct: 119 QRKEERQAHLTNQYMQRM 136
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KNLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++
Sbjct: 45 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEM 103
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER + TN Y++ ++
Sbjct: 104 NGRIVATKPLYVALAQRKEERQAHL-----TNQYMQRMA 137
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYV +L+ + D +L F+ G + S +V + RS G+G+V FS+ +EA +A+ +
Sbjct: 46 LYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEM 103
Query: 86 NFTPLNGKPIRVMYSHR 102
N + KP+ V + R
Sbjct: 104 NGRIVATKPLYVALAQR 120
>gi|110002613|gb|AAI18569.1| PABPC4 protein [Homo sapiens]
Length = 252
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 104/129 (80%), Gaps = 1/129 (0%)
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 120 RKEERKAHL 128
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 15/138 (10%)
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEED 218
+NG ++ K ++VG +K ER E+ K KF N+Y+KNL ++ +E
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAEL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 59
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L+K F +G+ITSA VM + DG+SK FGFV F + ++A +AV +NG+ K YV A
Sbjct: 60 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 118
Query: 279 QKKSERELELKHQFEQNM 296
Q+K ER+ L +Q+ Q +
Sbjct: 119 QRKEERKAHLTNQYMQRV 136
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 63/99 (63%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD ID + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++
Sbjct: 45 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 103
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER K+ TN Y++ ++
Sbjct: 104 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 137
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LY+ +L+ + D +L F+ G + S +V L RS G+G+V FS+ +EA +A+ +
Sbjct: 46 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 103
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD--KAIDHKALHDTF 132
N + KP+ V + R RK+ N +++ + +A+ A+ + F
Sbjct: 104 NGRIVGSKPLYVALAQRK-EERKAHLTNQYMQRVAGMRALPANAILNQF 151
>gi|74762343|sp|Q6NV95.1|PAB1L_HUMAN RecName: Full=Putative protein PABPC1-like; AltName:
Full=Polyadenylate-binding protein pseudogene 2
gi|158258146|dbj|BAF85046.1| unnamed protein product [Homo sapiens]
Length = 269
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEIN-KSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
++GMLLN V+VG F +E++ E+ ++K + V G +
Sbjct: 1 MDGMLLNGLNVFVGRFRSPKEQEAELGARAKESKV---------------------GPAS 39
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D GKSK FGFV+FE +D A++ +NGK+F + Y+ A KK E + ELK
Sbjct: 40 SVKVITDEGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKKVEEQTELKC 98
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+FEQ ++ ++QGAN+ +KNLD+SIDDE+L++ FSPFG I S VM + G S+ GF
Sbjct: 99 KFEQMKQDRITRYQGANVCVKNLDESIDDERLQKEFSPFGIINSANVMME-GGCSKRFGF 157
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
V FS+PEE ++A+ MNGK+V SKPL+VALAQ KE R A
Sbjct: 158 VCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLAHF 198
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 95/177 (53%), Gaps = 16/177 (9%)
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S G S KV TD G+SKG+GFV F+ E Q A++ +NG + Q Y+ +K E
Sbjct: 33 SKVGPASSVKVITDEGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKKVE 91
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
TE+ K KF NV VKNL ES +E LQK F +G I SA VM +G
Sbjct: 92 EQTEL-KCKFEQMKQDRITRYQGANVCVKNLDESIDDERLQKEFSPFGIINSANVMMEG- 149
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
G SK FGFV F + ++ A+AV A+NGK K +V AQ K +R +Q+ Q M
Sbjct: 150 GCSKRFGFVCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLAHFTNQYMQKM 206
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 26/184 (14%)
Query: 45 NQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-- 102
+++G SV+V D +S G+G+V+F ++ A++ +N +G + + +
Sbjct: 33 SKVGPASSVKVITD-EGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKKV 90
Query: 103 ---------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
D R GA N+ +KNLD++ID + L FS FG I S V +
Sbjct: 91 EEQTELKCKFEQMKQDRITRYQGA-NVCVKNLDESIDDERLQKEFSPFGIINSANVMME- 148
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYV 207
G SK +GFV F + E KA+ +NG ++ K ++V K++R + FTN Y+
Sbjct: 149 GGCSKRFGFVCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQR-----LAHFTNQYM 203
Query: 208 KNLS 211
+ ++
Sbjct: 204 QKMA 207
>gi|78070599|gb|AAI06909.1| PABPC4 protein [Homo sapiens]
Length = 281
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 104/129 (80%), Gaps = 1/129 (0%)
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 383 RKEDRRARL 391
RKE+R+A L
Sbjct: 120 RKEERKAHL 128
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 15/138 (10%)
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEED 218
+NG ++ K ++VG +K ER E+ K KF N+Y+KNL ++ +E
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAEL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 59
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L+K F +G+ITSA VM + DG+SK FGFV F + ++A +AV +NG+ K YV A
Sbjct: 60 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 118
Query: 279 QKKSERELELKHQFEQNM 296
Q+K ER+ L +Q+ Q +
Sbjct: 119 QRKEERKAHLTNQYMQRV 136
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 63/99 (63%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD ID + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++
Sbjct: 45 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 103
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER K+ TN Y++ ++
Sbjct: 104 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 137
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LY+ +L+ + D +L F+ G + S +V L RS G+G+V FS+ +EA +A+ +
Sbjct: 46 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 103
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD--KAIDHKALHDTF 132
N + KP+ V + R RK+ N +++ + +A+ A+ + F
Sbjct: 104 NGRIVGSKPLYVALAQRK-EERKAHLTNQYMQRVAGMRALPANAILNQF 151
>gi|320168681|gb|EFW45580.1| polyadenylate-binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 814
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 192/384 (50%), Gaps = 35/384 (9%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
++ G L V +L+ + D QL D+F + G ++ +C+ S S+G G V + + +A
Sbjct: 74 SKVGAIKLVVKNLDPRMDDQQLRDIFGEFG---TMTLCKVAS---SIGVGLVTYESFDDA 127
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
A+ +N LNG+ ++V HR P R S + ++NL ++L FG +
Sbjct: 128 HAAMTQVNGMYLNGQQVQV---HRLPE-RPS----LIVRNLPADASEESLAALCRPFGRV 179
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
+ + + G V D E A AI L+G L Q+ V + ER+ E
Sbjct: 180 GVATIVQEAP-EDAPMGVVCLDRFEDALTAIRALHGSKLGSNQLSVTFPATRAERECESA 238
Query: 199 KSKFTN-----VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
++ + +KN+ ++ L++ F +GTI S +MRD GKSK +GFV + +
Sbjct: 239 VAQRLERLQGKLVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKGYGFVAYSTT 298
Query: 254 DDAARAVEALNGKKFD------DKEWYVGKAQK---KSERELELKHQFEQNMKEAADKFQ 304
+ A++A+ A +G+ FD D + K+ R E++H E K
Sbjct: 299 EAASKAMAATHGQTFDRLTRPLDVTIFTSSEHDGMFKANRVAEVRHHAEVARIAQFRK-- 356
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
NL I+NL +SID+++L+ LF+PFG I +C V+RD G SR GFV F+T EEAS+A+
Sbjct: 357 --NLCIRNLGESIDEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVA 414
Query: 365 EMNGKMV--VSKPLYVALAQRKED 386
EM+GK P+ V L+ R D
Sbjct: 415 EMHGKPSPGTQMPMTVTLSHRARD 438
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 193/413 (46%), Gaps = 75/413 (18%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L + +++ ++ D QL +LF G ++S+ + RD T +S GYG+V +S + A++A+
Sbjct: 250 LVIKNMDVDMDDDQLEELFAPFGTIISLHIMRD-ETGKSKGYGFVAYSTTEAASKAMAAT 308
Query: 86 N---FTPLNGKPIRVMY-----------SHRDPSLRKSGA--------GNIFIKNLDKAI 123
+ F L +P+ V ++R +R N+ I+NL ++I
Sbjct: 309 HGQTFDRLT-RPLDVTIFTSSEHDGMFKANRVAEVRHHAEVARIAQFRKNLCIRNLGESI 367
Query: 124 DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
D K L F+ FG I +C V D G+S+ GFV F E A KA+ +++G Q+
Sbjct: 368 DEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEMHGKPSPGTQMP 427
Query: 184 VGHFLRKQERDTE------------------------INKSKFTNVYVKNLSESTTEEDL 219
+ L + RD + I K +YVKN+ + EDL
Sbjct: 428 MTVTLSHRARDAQDPPAPNASGKDSSTDEAEPDAEGQIRPRKL--IYVKNIDPAVELEDL 485
Query: 220 QKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
Q+ FG++G I S+ +MRD G SK G V++ ++D A AV A++GK+ G+
Sbjct: 486 QRVFGQFGAIVSSNIMRDDAGISKGIGHVDYLHADAARAAVAAMDGKRL----TATGQPL 541
Query: 280 KKSERELELKHQFEQNMKEAADKFQG---ANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
+ S + + D+F A+L IKNL+ SI+ L+ LFSPFG I S +
Sbjct: 542 RVS-------------LPDPRDRFSPIRYASLIIKNLEQSINLSALRDLFSPFGCILSSR 588
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
+ + V F + E A+ +NG +V P+ + RK DRR+
Sbjct: 589 TIE----TQPRAALVDFLSEEACQNAIANINGAIVNGLPVTASPYVRK-DRRS 636
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 168/349 (48%), Gaps = 34/349 (9%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+YV +++ V L +F Q G +VS + RD S G G+V++ +A A A+ +
Sbjct: 471 IYVKNIDPAVELEDLQRVFGQFGAIVSSNIMRD-DAGISKGIGHVDYLHADAARAAVAAM 529
Query: 86 NFTPLN--GKPIRVMYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ L G+P+RV S DP R S ++ IKNL+++I+ AL D FS FG ILS
Sbjct: 530 DGKRLTATGQPLRV--SLPDPRDRFSPIRYASLIIKNLEQSINLSALRDLFSPFGCILSS 587
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+ + Q + V F +EE+ Q AI +NG ++N V ++RK R
Sbjct: 588 RT---IETQPRA-ALVDFLSEEACQNAIANINGAIVNGLPVTASPYVRKDRR-------- 635
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
+VYV NL + L F + G I + +V RD GFV F+ A E
Sbjct: 636 --SVYVANLPANYNYVKLMALFADCGKIVTTIVPRD----FSTVGFVCFDQPASVELA-E 688
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+G + +E YV + L+ ++ LY+ N+D ++K
Sbjct: 689 RFHGHVLEGEELYVSR--------FPLQTDPAPPPHATSEVAPYHILYLTNVDFEASEDK 740
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
+++L +P+G++T+ V R G SRG FV F+ E+AS+A ++G++
Sbjct: 741 VRELCAPYGTLTAVHVRRRADGTSRGFAFVHFTNVEDASKAKDALSGQI 789
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 125/246 (50%), Gaps = 20/246 (8%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SL + +LE ++ S L DLF+ G ++S R + R +L V+F + + A+
Sbjct: 559 SLIIKNLEQSINLSALRDLFSPFGCILSSRTI-ETQPRAAL----VDFLSEEACQNAIAN 613
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N +NG P+ P +RK ++++ NL ++ L F+ G I++ V
Sbjct: 614 INGAIVNGLPVTA-----SPYVRKDRR-SVYVANLPANYNYVKLMALFADCGKIVTTIVP 667
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS---- 200
D + GFV FD S + A E+ +G +L +++YV F + + + +
Sbjct: 668 RDFST----VGFVCFDQPASVELA-ERFHGHVLEGEELYVSRFPLQTDPAPPPHATSEVA 722
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+ +Y+ N+ +E+ +++ YGT+T+ V R DG S+ F FV+F N +DA++A
Sbjct: 723 PYHILYLTNVDFEASEDKVRELCAPYGTLTAVHVRRRADGTSRGFAFVHFTNVEDASKAK 782
Query: 261 EALNGK 266
+AL+G+
Sbjct: 783 DALSGQ 788
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 17/180 (9%)
Query: 8 GQNVNGGGANANQF---GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
G VNG A+ + S+YV +L AN +L LF G++V+ V RD ST
Sbjct: 616 GAIVNGLPVTASPYVRKDRRSVYVANLPANYNYVKLMALFADCGKIVTTIVPRDFST--- 672
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAGNI------FI 116
G+V F A E + L G+ + V DP+ + ++
Sbjct: 673 --VGFVCFDQPASVELA-ERFHGHVLEGEELYVSRFPLQTDPAPPPHATSEVAPYHILYL 729
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
N+D + + + +G + + V +G S+G+ FV F N E A KA + L+G +
Sbjct: 730 TNVDFEASEDKVRELCAPYGTLTAVHVRRRADGTSRGFAFVHFTNVEDASKAKDALSGQI 789
>gi|403372370|gb|EJY86082.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 695
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 157/276 (56%), Gaps = 4/276 (1%)
Query: 52 SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGA 111
S +V T + LGYGY+ F++ +EA R L+ +N LNG+ +R+++S +
Sbjct: 113 SAKVVLHKRTSKPLGYGYLQFNSKEEADRCLQDMNNYVLNGQALRIVHSVS--KFDYNPK 170
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 171
N+ +KNLDK + + L D+F FG+I S K+ T +G S+GY F+QF +EE A+KA+
Sbjct: 171 ANLLVKNLDKEVTQQELFDSFKQFGDIQSLKLETYPDGSSRGYAFIQFQSEEEAEKALNA 230
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N + K++ + +K R+ ++KF N++VKNL + T ++ L+ FG++G I S
Sbjct: 231 MNQAEIKGKKIEINRHEKKATRENP-QQTKFNNLFVKNLPKGTDDDQLKGLFGKFGEIES 289
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V RD G K +G+V F+ D A AV +N K+ DD+ V + K + E +
Sbjct: 290 VTVQRDEQGNLKDYGYVCFKEPDHAEAAVLEMNKKQIDDQFLIVNQHISKKDNEPTQGSR 349
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+ + +K +N+YIK + + + +E+L++ FS
Sbjct: 350 LNP-ITQNLNKTFNSNIYIKFIPNEVTEEELRKTFS 384
>gi|303391122|ref|XP_003073791.1| polyadenylate-binding protein 2 [Encephalitozoon intestinalis ATCC
50506]
gi|303302939|gb|ADM12431.1| polyadenylate-binding protein 2 [Encephalitozoon intestinalis ATCC
50506]
Length = 410
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 163/291 (56%), Gaps = 13/291 (4%)
Query: 107 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQ 166
R GNIF+KNL + K L D FS FG I SCKVAT +G+SKGYGFVQF +++A+
Sbjct: 6 RPPETGNIFVKNLPENFTSKDLDDAFSMFGEITSCKVATTSHGKSKGYGFVQFKEKKAAK 65
Query: 167 KAIE---KLNGMLLNDKQVYVGHFLRKQER-DTEINKSKFTNVYVKNLSESTTEEDLQKS 222
K I+ LNG++L + ++ V + + ++ + + + FTN ++KN EE+L++
Sbjct: 66 KVIKNFNNLNGLMLGENKIVVELYNPEMKKGENKKTPTMFTNCFIKNFPVDVEEENLREL 125
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK-KFDDKE----WYVGK 277
+YG +TS DGK K F F NFE+ + A A++ L+ F D E +Y+ K
Sbjct: 126 LEKYGKVTSLFFPTKEDGKPKGFAFANFESHECALNAIKNLHETFPFGDGESGEPFYIQK 185
Query: 278 AQKKSERELELKHQFEQ-NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
Q+K ER EL+ FEQ +M+ + K NLYI N+ + E+L +F FG+ITS
Sbjct: 186 GQRKEERAEELRKTFEQLSMQGQSYK---KNLYITNIPEGFGAEELNNIFREFGNITSMS 242
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
V D + + +V +STPEEAS A+ N + L VA + K +R
Sbjct: 243 VGTDGANSQKQYAYVCYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLER 293
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 132/287 (45%), Gaps = 28/287 (9%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T +++V +L N T L D F+ G++ S +V S +S GYG+V F + A + +
Sbjct: 10 TGNIFVKNLPENFTSKDLDDAFSMFGEITSCKVA-TTSHGKSKGYGFVQFKEKKAAKKVI 68
Query: 83 EMLNFTPLNGKPI---RVMYSHRDPSLRK-------SGAGNIFIKNLDKAIDHKALHDTF 132
+ NF LNG + +++ +P ++K + N FIKN ++ + L +
Sbjct: 69 K--NFNNLNGLMLGENKIVVELYNPEMKKGENKKTPTMFTNCFIKNFPVDVEEENLRELL 126
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL-----NDKQVYVGHF 187
+G + S T +G+ KG+ F F++ E A AI+ L+ + + Y+
Sbjct: 127 EKYGKVTSLFFPTKEDGKPKGFAFANFESHECALNAIKNLHETFPFGDGESGEPFYIQKG 186
Query: 188 LRKQERDTEINK----------SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
RK+ER E+ K S N+Y+ N+ E E+L F E+G ITS V D
Sbjct: 187 QRKEERAEELRKTFEQLSMQGQSYKKNLYITNIPEGFGAEELNNIFREFGNITSMSVGTD 246
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
G K + +V + ++A+ AVE N D V + K ER
Sbjct: 247 GANSQKQYAYVCYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLER 293
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 99/221 (44%), Gaps = 30/221 (13%)
Query: 188 LRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
+RK ER E N++VKNL E+ T +DL +F +G ITS V GKSK +GF
Sbjct: 1 MRKDERPPETG-----NIFVKNLPENFTSKDLDDAFSMFGEITSCKVATTSHGKSKGYGF 55
Query: 248 VNFENSDDAARAVEA---LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
V F+ A + ++ LNG + + V EL + MK+ +K
Sbjct: 56 VQFKEKKAAKKVIKNFNNLNGLMLGENKIVV-----------EL---YNPEMKKGENKKT 101
Query: 305 GA---NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361
N +IKN +++E L++L +G +TS G +G F F + E A
Sbjct: 102 PTMFTNCFIKNFPVDVEEENLRELLEKYGKVTSLFFPTKEDGKPKGFAFANFESHECALN 161
Query: 362 ALLEMN-----GKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
A+ ++ G +P Y+ QRKE+R L+ Q
Sbjct: 162 AIKNLHETFPFGDGESGEPFYIQKGQRKEERAEELRKTFEQ 202
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 20/192 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+ ++ + +V + L +L + G+V S+ + G+ + NF + + A A++
Sbjct: 106 TNCFIKNFPVDVEEENLRELLEKYGKVTSLFFPTK-EDGKPKGFAFANFESHECALNAIK 164
Query: 84 MLNFT-PL----NGKPIRVMYSHRDPS----LRK----------SGAGNIFIKNLDKAID 124
L+ T P +G+P + R LRK S N++I N+ +
Sbjct: 165 NLHETFPFGDGESGEPFYIQKGQRKEERAEELRKTFEQLSMQGQSYKKNLYITNIPEGFG 224
Query: 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
+ L++ F FGNI S V TD K Y +V + E A A+E+ N + L+ ++ V
Sbjct: 225 AEELNNIFREFGNITSMSVGTDGANSQKQYAYVCYSTPEEASIAVERGNEIYLDGNRLQV 284
Query: 185 GHFLRKQERDTE 196
+F K ER E
Sbjct: 285 AYFKNKLERMKE 296
>gi|294879376|ref|XP_002768666.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239871376|gb|EER01384.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 342
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 127/230 (55%), Gaps = 41/230 (17%)
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVY+K++ S TEE +++ FG +G ITS + D G+ F FVNF + A AVE
Sbjct: 4 FTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGRR--FAFVNFAEFEQARAAVE 61
Query: 262 ALNGKKFDDKE---------------------------------------WYVGKAQKKS 282
++G+ ++E YV +AQ K+
Sbjct: 62 DMDGEDVRNEEEKAADKAQREREREERRVAREAVGDEVESDDDVEPESYRLYVARAQSKA 121
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
ER LK QF +F G NLY+KNL +++DD +LK++F PFG+ITS KVM D
Sbjct: 122 ERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDK 181
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
G+SRG GFV FST EEA++A+ +M+ K++ KPLYV + +++E R RLQ
Sbjct: 182 GVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQ 231
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 55/232 (23%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IK++ + + + + F AFG I S + TD G+ + FV F E A+ A+E +
Sbjct: 6 NVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGRR--FAFVNFAEFEQARAAVEDM 63
Query: 173 NGMLLNDKQ---------------------------------------VYVGHFLRKQER 193
+G + +++ +YV K ER
Sbjct: 64 DGEDVRNEEEKAADKAQREREREERRVAREAVGDEVESDDDVEPESYRLYVARAQSKAER 123
Query: 194 DTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+ K +F N+YVKNL E+ + +L++ F +GTITS VM D G
Sbjct: 124 -AAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKG 182
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
S+ FGFV F ++A +AV ++ K K YVG +K+ +R L+ ++
Sbjct: 183 VSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRY 234
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
G N+++KNL + +D L F FG I S KV TD G S+G+GFV F E A KA+
Sbjct: 143 GGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAV 202
Query: 170 EKLNGMLLNDKQVYVGHFLRKQER 193
++ L+ K +YVG ++++R
Sbjct: 203 TDMHLKLIGGKPLYVGMHEKREQR 226
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 9 QNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYG 68
Q G GA +FG +LYV +L V D++L +F G + SV+V D S G+G
Sbjct: 130 QFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTD-DKGVSRGFG 188
Query: 69 YVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRK 108
+V FS +EA +A+ ++ + GKP+ V M+ R+ L +
Sbjct: 189 FVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLER 229
>gi|365760899|gb|EHN02583.1| Pes4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 598
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 187/386 (48%), Gaps = 59/386 (15%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++GDL VT+ L +F + VS +VC D T++SLG+GY+NF + +EA RA+E L
Sbjct: 80 LFIGDLHETVTEETLKGIFGKFPSFVSAKVCLDSITKKSLGHGYLNFEDKEEAERAMEEL 139
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCK 142
N+T +NG+ IR+M S R+ + RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 140 NYTDVNGREIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 199
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT---EINK 199
+ + K GFV F+NE++A+ I+ N K++ G K+ R E K
Sbjct: 200 LDS-----RKDIGFVYFENEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 254
Query: 200 SKF--------------------------------TNVYVKNLSESTTEEDLQKSFGEYG 227
S+ ++++KNL TT +D+ F E G
Sbjct: 255 SRLDAETIIEKEQALNATQLKRNDGASKNNQSSSQNSIFIKNLPIITTRDDVLNFFSEVG 314
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I S + + + + FV +++++D+ +A++ N F K+ V +AQ K ER
Sbjct: 315 PIKS-IYLSNATKVKYLWAFVTYKSNEDSEKAIKRYNNFYFRGKKLLVSRAQDKEERAKF 373
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347
++ Q + + L+++NL + E LK L +I K+ D S
Sbjct: 374 IESQ------------KMSTLFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYNESSA 420
Query: 348 --SGFVAFSTPEEASRALLEMNGKMV 371
SG + F E+A+R +N ++V
Sbjct: 421 TYSGHIKFRNFEDATRIFNFLNNRLV 446
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 26/170 (15%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARA 259
K +++ +L E+ TEE L+ FG++ + SA V D KS G++NFE+ ++A RA
Sbjct: 76 KLIPLFIGDLHETVTEETLKGIFGKFPSFVSAKVCLDSITKKSLGHGYLNFEDKEEAERA 135
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL---DDS 316
+E LN + +E + + + + F +N G N++ NL +
Sbjct: 136 MEELNYTDVNGREIRIMPSLRNT--------TFRKNF--------GTNVFFSNLPLNNPL 179
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
+ FS +G I SCK+ + GFV F E+ +R +++M
Sbjct: 180 LTTRVFYDTFSRYGKILSCKL-----DSRKDIGFVYFEN-EKTARNVIKM 223
>gi|331224641|ref|XP_003324992.1| hypothetical protein PGTG_06529 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309303982|gb|EFP80573.1| hypothetical protein PGTG_06529 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 306
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 129/238 (54%), Gaps = 9/238 (3%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAARALE 83
S+YVGDL +T+ QL +F+Q V +R+ +TR Y YV +S+A A A+
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRRAYAYVTYSSADAATAAIR 88
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
N T GKP RVM S + S A N+F+K+L + A HDTF+ FG +LS K+
Sbjct: 89 EFNQTEFLGKPCRVMKSIHGAAKGLSEA-NVFVKHLPAKLSAIAFHDTFADFGEVLSSKL 147
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN----DKQVYVGHFLRKQERDTEINK 199
A D KGYGFVQ+ E AQKAI + NG L+ K + F++K+ R I
Sbjct: 148 AIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLDVEGATKPIKTSLFIKKENR---IVS 204
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+F NV+ +NLS T E ++++ +YG ITSA + DGK GF NFE AA
Sbjct: 205 REFKNVFFRNLSTKITLEKFKQTWSKYGVITSAFLSLGKDGKPTGTGFANFEKPSAAA 262
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 23/190 (12%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVV--MRDGDGKSKCFGFVNFENSDDAARAVE 261
+VYV +L TEE L + F + + + + + + +V + ++D A A+
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRRAYAYVTYSSADAATAAIR 88
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
N +F K V K ++ AA AN+++K+L +
Sbjct: 89 EFNQTEFLGKPCRVMK-----------------SIHGAAKGLSEANVFVKHLPAKLSAIA 131
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV----VSKPLY 377
F+ FG + S K+ D + +G GFV ++T E+A +A+ E NG + +KP+
Sbjct: 132 FHDTFADFGEVLSSKLAIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLDVEGATKPIK 191
Query: 378 VALAQRKEDR 387
+L +KE+R
Sbjct: 192 TSLFIKKENR 201
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 18/250 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNI--LSCKVATDLNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L I + L FS + + K+ + Y +V + + ++A AI
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRRAYAYVTYSSADAATAAIR 88
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+ N K V + + NV+VK+L + +F ++G +
Sbjct: 89 EFNQTEFLGKPCRVMKSIHGAAKGLSE-----ANVFVKHLPAKLSAIAFHDTFADFGEVL 143
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ + D K +GFV + ++ A +A+ NG D V A K + L +K
Sbjct: 144 SSKLAIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLD-----VEGATKPIKTSLFIKK 198
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ +E F+ N++ +NL I EK KQ +S +G ITS + G G+GF
Sbjct: 199 ENRIVSRE----FK--NVFFRNLSTKITLEKFKQTWSKYGVITSAFLSLGKDGKPTGTGF 252
Query: 351 VAFSTPEEAS 360
F P A+
Sbjct: 253 ANFEKPSAAA 262
>gi|47198027|emb|CAF89020.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 110/157 (70%), Gaps = 2/157 (1%)
Query: 183 YVGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+VG+F ++ER+ E+ KFTNVY+KN E T+E L++ F +G S VM+D G
Sbjct: 1 FVGNFKSRKEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERG 60
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
+S+ FGFVNF + DA +AV+ +NG + + K YVG+AQK+ ER+ ELK +FE ++
Sbjct: 61 RSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRI 120
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
++QG NLY+KNLDD IDDE+L++ F+P+G+ITS KV
Sbjct: 121 QRYQGVNLYVKNLDDGIDDERLRKEFAPYGTITSAKV 157
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 85/152 (55%), Gaps = 15/152 (9%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKN + + L + FSAFG LS +V D G+S+G+GFV F + AQKA++++
Sbjct: 24 NVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEM 83
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDL 219
NG LN K +YVG ++ ER E+ K KF N+YVKNL + +E L
Sbjct: 84 NGTELNGKVIYVGRAQKRLERQGEL-KRKFELIKQDRIQRYQGVNLYVKNLDDGIDDERL 142
Query: 220 QKSFGEYGTITSA-VVMRDGDGKSKCFGFVNF 250
+K F YGTITSA V R +S F +F
Sbjct: 143 RKEFAPYGTITSAKVPQRRLPSRSPTPPFSSF 174
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 10/119 (8%)
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
+VG + + ERE EL + A KF N+YIKN + DEKLK++FS FG
Sbjct: 1 FVGNFKSRKEREEELGSK--------ALKF--TNVYIKNFGEDYTDEKLKEVFSAFGRTL 50
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S +VM+D G SRG GFV F+ +A +A+ EMNG + K +YV AQ++ +R+ L+
Sbjct: 51 SVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELK 109
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 80/147 (54%), Gaps = 21/147 (14%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G+ A +F T++Y+ + + TD +L ++F+ G+ +SVRV +D RS G+G+VNF++
Sbjct: 16 GSKALKF--TNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKD-ERGRSRGFGFVNFAH 72
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
+A +A++ +N T LNGK I V + + D R G N+++K
Sbjct: 73 HGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGV-NLYVK 131
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVA 144
NLD ID + L F+ +G I S KV
Sbjct: 132 NLDDGIDDERLRKEFAPYGTITSAKVP 158
>gi|440302784|gb|ELP95091.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 546
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 180/352 (51%), Gaps = 23/352 (6%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+++V L NVTDS L + + +VVS+ V ++ S Y+N S A R +
Sbjct: 22 TIFVSGLTNNVTDSLLSSVVMEKFPTEVVSIHVTKNES-HFDTPIAYINMSTHDAAKRVI 80
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
LN ++GKPI + ++ +D R N+F+KN+ K+++ K L D FSA G LS K
Sbjct: 81 STLNGVMVDGKPINMFWALKDFKQRTDTQTNLFVKNIKKSVNQKELQDVFSAIGETLSVK 140
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVGHFLRKQERDTEINKSK 201
++ + G+S G+G+V++ E+ Q A++K + + ++ +V KQ NKS+
Sbjct: 141 LSLNEKGESNGFGYVKYRTLEATQAALDKSDELKAKIGEETFVVQKFEKQ------NKSR 194
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSA------VVMRDGDGKSKCFGFVNFENSDD 255
TN+YV N+ + TEE K F +G I V+ + K GFV+FEN +D
Sbjct: 195 KTNLYVYNIDKKVTEEQFIKYFETFGPIRKTSDKKPQVLFVSEETKDTAKGFVDFENEED 254
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
AA+AV A + E V + K ER E K + + K++ NLY+ L +
Sbjct: 255 AAKAVSAPKNSVLGNGEIVVAYYKNKEERRREWKAKTAEVKANIKGKYKDFNLYVDTLKE 314
Query: 316 SIDDEKLKQLFSPFGSITSCKVM---RDPSGISRGSGFVAFSTPEEASRALL 364
SI ++++++ G I S + R P+G++ ++ ++T E A+ A++
Sbjct: 315 SITEKEIREGLGEEGEIYSLSIRWVDRKPTGVA----YLCYTTAEGANNAIV 362
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 27/258 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L+V +++ +V +L D+F+ +G+ +SV++ + S G+GYV + + AL+
Sbjct: 110 TNLFVKNIKKSVNQKELQDVFSAIGETLSVKLSLN-EKGESNGFGYVKYRTLEATQAALD 168
Query: 84 MLN-FTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ G+ V+ + KS N+++ N+DK + + F FG I
Sbjct: 169 KSDELKAKIGEETFVVQKFEKQN--KSRKTNLYVYNIDKKVTEEQFIKYFETFGPIRKTS 226
Query: 143 --------VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
V+ + +K GFV F+NEE A KA+ +L + ++ V ++ K+ER
Sbjct: 227 DKKPQVLFVSEETKDTAK--GFVDFENEEDAAKAVSAPKNSVLGNGEIVVAYYKNKEERR 284
Query: 195 TEIN------------KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E K K N+YV L ES TE+++++ GE G I S + +R D K
Sbjct: 285 REWKAKTAEVKANIKGKYKDFNLYVDTLKESITEKEIREGLGEEGEIYS-LSIRWVDRKP 343
Query: 243 KCFGFVNFENSDDAARAV 260
++ + ++ A A+
Sbjct: 344 TGVAYLCYTTAEGANNAI 361
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 122/259 (47%), Gaps = 31/259 (11%)
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDT 195
++S V + + ++ ++A++ I LNG++++ K + + L+ KQ DT
Sbjct: 49 VVSIHVTKNESHFDTPIAYINMSTHDAAKRVISTLNGVMVDGKPINMFWALKDFKQRTDT 108
Query: 196 EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+ TN++VKN+ +S +++LQ F G S + + G+S FG+V + +
Sbjct: 109 Q------TNLFVKNIKKSVNQKELQDVFSAIGETLSVKLSLNEKGESNGFGYVKYRTLEA 162
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A++ K D+ + +G+ E + +FE+ +K + NLY+ N+D
Sbjct: 163 TQAALD-----KSDELKAKIGE-------ETFVVQKFEKQ-----NKSRKTNLYVYNIDK 205
Query: 316 SIDDEKLKQLFSPFGSI--TSCK----VMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+ +E+ + F FG I TS K + GFV F E+A++A+
Sbjct: 206 KVTEEQFIKYFETFGPIRKTSDKKPQVLFVSEETKDTAKGFVDFENEEDAAKAVSAPKNS 265
Query: 370 MVVSKPLYVALAQRKEDRR 388
++ + + VA + KE+RR
Sbjct: 266 VLGNGEIVVAYYKNKEERR 284
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 27/195 (13%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV-----RVCRDLSTRRSLGYGYVNFS 73
N+ T+LYV +++ VT+ Q F G + +V + G+V+F
Sbjct: 191 NKSRKTNLYVYNIDKKVTEEQFIKYFETFGPIRKTSDKKPQVLFVSEETKDTAKGFVDFE 250
Query: 74 NAQEAARALEMLNFTPL-NGKPIRVMYSHRDPSLRKSGAG---------------NIFIK 117
N ++AA+A+ + L NG+ + Y +++ R+ A N+++
Sbjct: 251 NEEDAAKAVSAPKNSVLGNGEIVVAYYKNKEERRREWKAKTAEVKANIKGKYKDFNLYVD 310
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
L ++I K + + G I S + ++ + G ++ + E A AI K G L
Sbjct: 311 TLKESITEKEIREGLGEEGEIYSLSIRW-VDRKPTGVAYLCYTTAEGANNAIVK--GTQL 367
Query: 178 NDKQVYVGHFLRKQE 192
K V FL KQE
Sbjct: 368 GWK---VFKFLNKQE 379
>gi|328851168|gb|EGG00325.1| hypothetical protein MELLADRAFT_28015 [Melampsora larici-populina
98AG31]
Length = 223
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 126/228 (55%), Gaps = 14/228 (6%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+L +V L ++F+Q V++ RVC D T++ GYGYV+++ +EA AL
Sbjct: 1 SLYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALRE 60
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N L GKPIRVM S+ N+FIKNL K+ LHD+F FG ILS K++
Sbjct: 61 FNHINLKGKPIRVMRSYSGKPKEFPSEANLFIKNLPKSFTPINLHDSFERFGKILSSKIS 120
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL---------NDKQVYVGHFLRKQERDT 195
D G SKGYG++QF+N + + +AI N N K++ V +++ ++R
Sbjct: 121 FDQLGNSKGYGYIQFENPKDSNEAILNSNDFQFDIKDEEESKNMKKLKVTSYVKPEDR-- 178
Query: 196 EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
K KFTNV+ +NL TEE K E+G ITS ++ K+K
Sbjct: 179 ---KPKFTNVFFRNLPLDFTEESFSKYASEFGKITSLILNPINKSKAK 223
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 110/225 (48%), Gaps = 17/225 (7%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ NL ++ + L + FS +++ +V D + + +GYG+V + E A A+ +
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 173 NGMLLNDKQVYV--GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
N + L K + V + + +E +E N+++KNL +S T +L SF +G I
Sbjct: 62 NHINLKGKPIRVMRSYSGKPKEFPSE------ANLFIKNLPKSFTPINLHDSFERFGKIL 115
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ + D G SK +G++ FEN D+ A+ N +FD K+ K KK + +K
Sbjct: 116 SSKISFDQLGNSKGYGYIQFENPKDSNEAILNSNDFQFDIKDEEESKNMKKLKVTSYVKP 175
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
+ + KF N++ +NL +E + S FG ITS
Sbjct: 176 E------DRKPKF--TNVFFRNLPLDFTEESFSKYASEFGKITSL 212
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 17/164 (10%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV NL++ +DL F + + +A V D K + +G+V++ ++A A+
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K V ++ +E ANL+IKNL S L
Sbjct: 62 NHINLKGKPIRVMRSYSGKPKEFP----------------SEANLFIKNLPKSFTPINLH 105
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
F FG I S K+ D G S+G G++ F P++++ A+L N
Sbjct: 106 DSFERFGKILSSKISFDQLGNSKGYGYIQFENPKDSNEAILNSN 149
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
LY+ NL D ++ + L +FS + + +V D + RG G+V+++TPEEA AL E
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 367 NGKMVVSKPLYV 378
N + KP+ V
Sbjct: 62 NHINLKGKPIRV 73
>gi|170042459|ref|XP_001848942.1| polyadenylate-binding protein [Culex quinquefasciatus]
gi|167866018|gb|EDS29401.1| polyadenylate-binding protein [Culex quinquefasciatus]
Length = 339
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 146/262 (55%), Gaps = 31/262 (11%)
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FS+ GN+LSCKVA D+ G SKGY FV F SA AI+++NG+ +N + V
Sbjct: 2 FSSVGNVLSCKVALDIQGCSKGYAFVYFYATSSAHSAIDRVNGLAVNGASLAVSPL---- 57
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
FT ++V+N + T+ LQ+ F YG+I + V KS+ GF+ ++
Sbjct: 58 ----------FTKLHVRNFGDRLTQTTLQELFAPYGSIKAHGV------KSRGCGFIIYD 101
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ + A A+EALNGK D GKA R + + + Q A+ + ++++
Sbjct: 102 SPEAAGHALEALNGKALSD-----GKAL----RVVPVPERVLQPAPRLAEG-EAVQVFVR 151
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLD SID+ L +LF+P+G + ++++ G S+G GFV +++ E+A+RA++EMN + V
Sbjct: 152 NLDASIDNRHLGELFAPYGDVQRGFIVKE-QGKSKGFGFVTYASGEQAARAIVEMNDREV 210
Query: 372 VSKPLYVALAQRKEDRRARLQV 393
K +YV LA+ KE + +V
Sbjct: 211 AGKRIYVVLARGKEKPKPVSEV 232
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 137/291 (47%), Gaps = 34/291 (11%)
Query: 43 LFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102
+F+ +G V+S +V D+ S GY +V F A A++ +N +NG + V
Sbjct: 1 MFSSVGNVLSCKVALDIQGC-SKGYAFVYFYATSSAHSAIDRVNGLAVNGASLAV----- 54
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNE 162
P K + ++N + L + F+ +G+I + V +S+G GF+ +D+
Sbjct: 55 SPLFTK-----LHVRNFGDRLTQTTLQELFAPYGSIKAHGV------KSRGCGFIIYDSP 103
Query: 163 ESAQKAIEKLNGMLLNDKQVY--VGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
E+A A+E LNG L+D + V R + + + + V+V+NL S L
Sbjct: 104 EAAGHALEALNGKALSDGKALRVVPVPERVLQPAPRLAEGEAVQVFVRNLDASIDNRHLG 163
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV----G 276
+ F YG + ++++ GKSK FGFV + + + AARA+ +N ++ K YV G
Sbjct: 164 ELFAPYGDVQRGFIVKE-QGKSKGFGFVTYASGEQAARAIVEMNDREVAGKRIYVVLARG 222
Query: 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
K + K E++ H E A +L +K + D ++LK L +
Sbjct: 223 KEKPKPVSEVDAGH-------EPATTTDDTSLLLKTITDP---DELKSLLA 263
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL-----LEMNGKMVVSKPLYVA 379
+FS G++ SCKV D G S+G FV F A A+ L +NG + PL+
Sbjct: 1 MFSSVGNVLSCKVALDIQGCSKGYAFVYFYATSSAHSAIDRVNGLAVNGASLAVSPLFTK 60
Query: 380 LAQR 383
L R
Sbjct: 61 LHVR 64
>gi|55417872|gb|AAV50098.1| polyadenylate binding protein [Caenorhabditis remanei]
Length = 179
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 90/120 (75%)
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
AQKKSER ELK + EQ+ E K+QG NLY+KNLD+S+DDE LK+ F FG+ITS KV
Sbjct: 1 AQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKV 60
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
M D +G S+G GFV F PEEA+ A+ EMN KMV SKPLYVALAQRKEDRRA+L +Q
Sbjct: 61 MTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQ 120
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
+Q + + K + N+YVKNL ES +E L+K F +G ITSA VM D +G+SK FGFV
Sbjct: 16 EQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFGFVC 75
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FE ++A AV +N K K YV AQ+K +R +L Q+ Q +
Sbjct: 76 FEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRL 122
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 62/97 (63%)
Query: 101 HRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFD 160
H+ ++K N+++KNLD+++D +AL F FGNI S KV TD NG+SKG+GFV F+
Sbjct: 18 HKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFGFVCFE 77
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
E A A+ ++N ++ K +YV RK++R ++
Sbjct: 78 KPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQL 114
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ +LYV +L+ +V D L F G + S +V D RS G+G+V F +EA
Sbjct: 25 KYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVMTD-ENGRSKGFGFVCFEKPEEAT 83
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
A+ +N + KP+ V + R
Sbjct: 84 TAVTEMNSKMVCSKPLYVALAQR 106
>gi|14318545|ref|NP_116678.1| Pes4p [Saccharomyces cerevisiae S288c]
gi|1172434|sp|P39684.2|PES4_YEAST RecName: Full=Protein PES4; AltName: Full=DNA polymerase epsilon
suppressor 4
gi|836778|dbj|BAA09262.1| DNA polymerase epsilon suppressor 4 [Saccharomyces cerevisiae]
gi|151940784|gb|EDN59171.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345636|gb|EDZ72395.1| YFR023Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256268849|gb|EEU04202.1| Pes4p [Saccharomyces cerevisiae JAY291]
gi|259146215|emb|CAY79474.1| Pes4p [Saccharomyces cerevisiae EC1118]
gi|285811918|tpg|DAA12463.1| TPA: Pes4p [Saccharomyces cerevisiae S288c]
gi|392299695|gb|EIW10788.1| Pes4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 611
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 187/386 (48%), Gaps = 59/386 (15%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++GDL VT+ L +F + VS +VC D T++SLG+GY+NF + +EA +A+E L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCK 142
N+T +NGK IR+M S R+ + RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT---EINK 199
+ + K GFV F++E++A+ I+ N K++ G K+ R E K
Sbjct: 213 LDS-----RKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 200 SKF--------------------------------TNVYVKNLSESTTEEDLQKSFGEYG 227
S+ ++++KNL TT +D+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I S + + + + FV ++NS D+ +A++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERAKF 386
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD--PSGIS 345
++ Q + + L+++NL + E LK L +I K+ D S
Sbjct: 387 IESQ------------KISTLFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMV 371
SGF+ F E+A+R +N ++V
Sbjct: 434 TYSGFIKFRNFEDATRIFNFLNNRLV 459
>gi|190406596|gb|EDV09863.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 611
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 187/386 (48%), Gaps = 59/386 (15%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++GDL VT+ L +F + VS +VC D T++SLG+GY+NF + +EA +A+E L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCK 142
N+T +NGK IR+M S R+ + RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT---EINK 199
+ + K GFV F++E++A+ I+ N K++ G K+ R E K
Sbjct: 213 LDS-----RKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 200 SKF--------------------------------TNVYVKNLSESTTEEDLQKSFGEYG 227
S+ ++++KNL TT +D+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I S + + + + FV ++NS D+ +A++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERAKF 386
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD--PSGIS 345
++ Q + + L+++NL + E LK L +I K+ D S
Sbjct: 387 IESQ------------KISTLFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMV 371
SGF+ F E+A+R +N ++V
Sbjct: 434 TYSGFIKFRNFEDATRIFNFLNNRLV 459
>gi|452239|dbj|BAA05461.1| PES4 PAB-like protein [Saccharomyces cerevisiae]
Length = 555
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 187/386 (48%), Gaps = 59/386 (15%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++GDL VT+ L +F + VS +VC D T++SLG+GY+NF + +EA +A+E L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCIDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCK 142
N+T +NGK IR+M S R+ + RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT---EINK 199
+ + K GFV F++E++A+ I+ N K++ G K+ R E K
Sbjct: 213 LDS-----RKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 200 SKF--------------------------------TNVYVKNLSESTTEEDLQKSFGEYG 227
S+ ++++KNL TT +D+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I S + + + + FV ++NS D+ +A++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERAKF 386
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD--PSGIS 345
++ Q + + L+++NL + E LK L +I K+ D S
Sbjct: 387 IESQ------------KISTLFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMV 371
SGF+ F E+A+R +N ++V
Sbjct: 434 TYSGFIKFRNFEDATRIFNFLNNRLV 459
>gi|123446312|ref|XP_001311908.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893735|gb|EAX98978.1| hypothetical protein TVAG_431870 [Trichomonas vaginalis G3]
Length = 574
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L VT L LF++ G V++V L + + Y +V+F+ +EA A+
Sbjct: 16 IHVANLPPTVTVEFLKSLFSEAGTVINVI----LKQKPTSCYAFVDFTLQEEAETAVRDF 71
Query: 86 NFTPLNGKPIRVMYSHRDP-SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N+T LNG+ I V + S SG GN+FIK LD++ID LH+ F+ +G I+SC++
Sbjct: 72 NYTKLNGETIIVTRTTAPVVSAISSGQGNLFIKGLDESIDCLQLHELFANYGEIVSCRIP 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-----K 199
T LNGQ +G+G+VQF +E A+ A+++L +N K + +G FL++ ER
Sbjct: 132 T-LNGQPRGFGYVQFLKQEDAEHAMKELADSTVNGKPIQIGPFLKRSERPLSAAFQNNLD 190
Query: 200 SKFTNVYVKNLSEST-TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
S FTNV+VKNL ++ T L + F E+G +TSA ++ + + G+V + A R
Sbjct: 191 SSFTNVFVKNLPDNINTLLSLLRLFHEFGDVTSARIVPE-----RHIGYVMMSEHEAAVR 245
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
AV L G+ K V ++ +ER +K E+
Sbjct: 246 AVVGLCGRTIFGKRLSVCRSLSPAERANFIKKPIEE 281
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 20/275 (7%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I + NL + + L FS G +++ + + Y FV F +E A+ A+ N
Sbjct: 16 IHVANLPPTVTVEFLKSLFSEAGTVINVILK---QKPTSCYAFVDFTLQEEAETAVRDFN 72
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
LN + + V R S N+++K L ES L + F YG I S
Sbjct: 73 YTKLNGETIIVT---RTTAPVVSAISSGQGNLFIKGLDESIDCLQLHELFANYGEIVSCR 129
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
+ +G+ + FG+V F +DA A++ L + K +G K+SER L F+
Sbjct: 130 I-PTLNGQPRGFGYVQFLKQEDAEHAMKELADSTVNGKPIQIGPFLKRSERPLSAA--FQ 186
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDE-KLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
N+ + N+++KNL D+I+ L +LF FG +TS +++ + R G+V
Sbjct: 187 NNLDSSF-----TNVFVKNLPDNINTLLSLLRLFHEFGDVTSARIVPE-----RHIGYVM 236
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
S E A RA++ + G+ + K L V + +R
Sbjct: 237 MSEHEAAVRAVVGLCGRTIFGKRLSVCRSLSPAER 271
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 27/194 (13%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L++ L+ ++ QL++LF G++VS R+ R G+GYV F ++A A
Sbjct: 97 GQGNLFIKGLDESIDCLQLHELFANYGEIVSCRIPTLNGQPR--GFGYVQFLKQEDAEHA 154
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRK--------------SGAGNIFIKNLDKAIDH-K 126
++ L + +NGKPI++ P L++ S N+F+KNL I+
Sbjct: 155 MKELADSTVNGKPIQI-----GPFLKRSERPLSAAFQNNLDSSFTNVFVKNLPDNINTLL 209
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
+L F FG++ S ++ + + G+V E+A +A+ L G + K++ V
Sbjct: 210 SLLRLFHEFGDVTSARIVPE-----RHIGYVMMSEHEAAVRAVVGLCGRTIFGKRLSVCR 264
Query: 187 FLRKQERDTEINKS 200
L ER I K
Sbjct: 265 SLSPAERANFIKKP 278
>gi|349577937|dbj|GAA23104.1| K7_Pes4p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 611
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 114/386 (29%), Positives = 187/386 (48%), Gaps = 59/386 (15%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++GDL VT+ L ++F + VS +VC D T++SLG+GY+NF + +EA +A+E L
Sbjct: 93 LFIGDLHETVTEETLKEIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCK 142
N+T +NGK IR+M S R+ + RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT---EINK 199
+ + K GFV F++E++A+ I+ N K++ G K+ R E K
Sbjct: 213 LDS-----RKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 200 SKF--------------------------------TNVYVKNLSESTTEEDLQKSFGEYG 227
S+ ++++KNL TT +D+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I S + + + + FV ++NS D+ +A++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERAKF 386
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD--PSGIS 345
++ Q + + L+++NL + E LK L +I K+ D S
Sbjct: 387 IESQ------------KISTLFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMV 371
SG + F E+A+R +N ++V
Sbjct: 434 TYSGLIKFRNFEDATRIFNFLNNRLV 459
>gi|367013040|ref|XP_003681020.1| hypothetical protein TDEL_0D02250 [Torulaspora delbrueckii]
gi|359748680|emb|CCE91809.1| hypothetical protein TDEL_0D02250 [Torulaspora delbrueckii]
Length = 622
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 108/388 (27%), Positives = 181/388 (46%), Gaps = 54/388 (13%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
+L++GDLE +VT++ L D+F + + SV++C D ++ +SLGYGY+NF+N+++A +A
Sbjct: 95 SVVALFIGDLEPSVTENMLRDIFGKFRSLTSVKICLDSNSGKSLGYGYLNFANSEDAEKA 154
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNI 138
E N+ P+ G+ +R+M S R+ RK+ N+F NL D + + +DTF +G I
Sbjct: 155 TEEFNYRPIEGQEVRIMPSLRNSFYRKNVGTNVFFSNLPLEDSRLTTRVFYDTFKKYGKI 214
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HF---LRKQ--- 191
LSCK+ + K GF+ F+N++SA+K I+ NG +V G HF RK
Sbjct: 215 LSCKL-----DKRKDIGFIYFNNDQSARKVIKDYNGKEFFGNKVLCGIHFDKDFRKYPEF 269
Query: 192 ---------------------------ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
+RD+ V+VKNL T E++ F
Sbjct: 270 EKRISNLDSITVAMEELTTEDSNKVVLQRDSGSQVPHPNAVFVKNLPMDCTNEEILDFFS 329
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
G + S + S + FV ++ D +++++ N K+F ++ V KA K
Sbjct: 330 NIGPVKSVFSSKAPKFNS-LWAFVTYKRGSDTSKSIQFYNDKEFKNRRLIVSKAVPK--- 385
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQL-FSPFGSITSCKVMRDPSG 343
E K+Q N K Q I ++ +++E L QL I +
Sbjct: 386 --EGKNQSPSNYKNYKTIVQ-----IDDVSPVLNEEFLSQLCIQERIKINKLHITSFNEK 438
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMV 371
SGF+ T +A+R +N +++
Sbjct: 439 TLTYSGFIKCKTKNDATRVFASLNNRLI 466
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 42/301 (13%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
+FI +L+ ++ L D F F ++ S K+ D N G+S GYG++ F N E A+KA E+
Sbjct: 99 LFIGDLEPSVTENMLRDIFGKFRSLTSVKICLDSNSGKSLGYGYLNFANSEDAEKATEEF 158
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS---ESTTEEDLQKSFGEYGTI 229
N + ++V + LR ++ K+ TNV+ NL T +F +YG I
Sbjct: 159 NYRPIEGQEVRIMPSLR----NSFYRKNVGTNVFFSNLPLEDSRLTTRVFYDTFKKYGKI 214
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S + K K GF+ F N A + ++ NGK+F + G K R+
Sbjct: 215 LSCKL-----DKRKDIGFIYFNNDQSARKVIKDYNGKEFFGNKVLCGIHFDKDFRKYP-- 267
Query: 290 HQFEQNM------------------------KEAADKFQGAN-LYIKNLDDSIDDEKLKQ 324
+FE+ + +++ + N +++KNL +E++
Sbjct: 268 -EFEKRISNLDSITVAMEELTTEDSNKVVLQRDSGSQVPHPNAVFVKNLPMDCTNEEILD 326
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS G + S + P S + FV + + S+++ N K ++ L V+ A K
Sbjct: 327 FFSNIGPVKSVFSSKAPKFNSLWA-FVTYKRGSDTSKSIQFYNDKEFKNRRLIVSKAVPK 385
Query: 385 E 385
E
Sbjct: 386 E 386
>gi|405946351|gb|EKC17616.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 199
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/151 (49%), Positives = 108/151 (71%)
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
+FE+ + A +AVEALNG K YV QK+ ER+ ELK +F++ E +++QG
Sbjct: 1 MASFEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGV 60
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
NLY+KNL D+IDD +L++ F+ FG+ITS KVM G S+G GFV F +PEEA++A++EM
Sbjct: 61 NLYVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEM 120
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
N K++ ++PLYVALAQ+K+DR+A+L +Q
Sbjct: 121 NEKLIEARPLYVALAQKKQDRKAQLASQYMQ 151
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 121/197 (61%), Gaps = 18/197 (9%)
Query: 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE------------INKSKFTNVY 206
F++ E+A+KA+E LNG K +YV ++ ER E IN+ + N+Y
Sbjct: 4 FEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGVNLY 63
Query: 207 VKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK 266
VKNL+++ + L+K F ++GTITSA VM DG+SK FGFV F + ++AA+A+ +N K
Sbjct: 64 VKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNEK 123
Query: 267 KFDDKEWYVGKAQKKSERELELKHQFEQ-----NMKEAADKFQGANLYIKNLDDSIDDEK 321
+ + YV AQKK +R+ +L Q+ Q +M E G NL+IKNLD SIDDEK
Sbjct: 124 LIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEHRIG-PGVNLFIKNLDKSIDDEK 182
Query: 322 LKQLFSPFGSITSCKVM 338
L++ FS FG+ITS KV+
Sbjct: 183 LREEFSQFGTITSAKVV 199
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 32/197 (16%)
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD----------------PSLRKSGAGNI 114
+F + + A +A+E LN GK I V ++ + + N+
Sbjct: 3 SFEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGVNL 62
Query: 115 FIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
++KNL ID L F+ FG I S KV T +G+SKG+GFV F + E A KAI ++N
Sbjct: 63 YVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNE 122
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKF----------------TNVYVKNLSESTTEED 218
L+ + +YV +KQ+R ++ N+++KNL +S +E
Sbjct: 123 KLIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEHRIGPGVNLFIKNLDKSIDDEK 182
Query: 219 LQKSFGEYGTITSAVVM 235
L++ F ++GTITSA V+
Sbjct: 183 LREEFSQFGTITSAKVV 199
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 25/147 (17%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSNAQ 76
N++ +LYV +L N+ D +L F Q G + S +V ++T RS G+G+V F + +
Sbjct: 55 NRYQGVNLYVKNLADNIDDVRLRKEFAQFGTITSAKV---MTTEDGRSKGFGFVCFRSPE 111
Query: 77 EAARALEMLNFTPLNGKPIRVMY-------------------SHRDPSLRKSGAG-NIFI 116
EAA+A+ +N + +P+ V S RD + G G N+FI
Sbjct: 112 EAAKAIVEMNEKLIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEHRIGPGVNLFI 171
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKV 143
KNLDK+ID + L + FS FG I S KV
Sbjct: 172 KNLDKSIDDEKLREEFSQFGTITSAKV 198
>gi|301606181|ref|XP_002932728.1| PREDICTED: polyadenylate-binding protein 1-B-like [Xenopus
(Silurana) tropicalis]
Length = 447
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 138/235 (58%), Gaps = 21/235 (8%)
Query: 157 VQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTE 216
V F+ + A++ + ++ +LLN+ + H DTE +K+K +YVKN + E
Sbjct: 5 VHFEIQVEAKRVVHAVD-VLLNESGMSDEHV-----NDTE-SKTKTCPIYVKNFVKEIDE 57
Query: 217 EDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276
+D FG+ G T ++ + G+ FG + F DA RAV+ + G + Y+
Sbjct: 58 DDF---FGKCGASTK--IINNDCGQQTEFGLLPFNKQKDAIRAVDKMKGM-----DIYLA 107
Query: 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
+A+ K +R+ E + E K ++ NLY+KNL IDD +LK+ F+PFG+ITS K
Sbjct: 108 QAKIKEKRQTEFSKKPEPLHK---PRYNSVNLYVKNLSYEIDDYRLKKEFAPFGTITSAK 164
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
VMR+ G S+G GFV FSTP EA +AL EMNGK++ SKPLYVA AQRK++R+ L
Sbjct: 165 VMRE-GGRSKGFGFVCFSTPAEARKALSEMNGKILASKPLYVAWAQRKQERQVSL 218
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 114/208 (54%), Gaps = 20/208 (9%)
Query: 101 HRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFD 160
H + + K+ I++KN K ID D F G S K+ + GQ +G + F+
Sbjct: 33 HVNDTESKTKTCPIYVKNFVKEIDED---DFFGKCG--ASTKIINNDCGQQTEFGLLPFN 87
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE-------INKSKF--TNVYVKNLS 211
++ A +A++K+ GM +Y+ K++R TE ++K ++ N+YVKNLS
Sbjct: 88 KQKDAIRAVDKMKGM-----DIYLAQAKIKEKRQTEFSKKPEPLHKPRYNSVNLYVKNLS 142
Query: 212 ESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK 271
+ L+K F +GTITSA VMR+G G+SK FGFV F +A +A+ +NGK K
Sbjct: 143 YEIDDYRLKKEFAPFGTITSAKVMREG-GRSKGFGFVCFSTPAEARKALSEMNGKILASK 201
Query: 272 EWYVGKAQKKSERELELKHQFEQNMKEA 299
YV AQ+K ER++ L Q+ Q M++A
Sbjct: 202 PLYVAWAQRKQERQVSLAQQYTQRMEKA 229
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ + +LYV +L + D +L F G + S +V R+ RS G+G+V FS EA
Sbjct: 130 RYNSVNLYVKNLSYEIDDYRLKKEFAPFGTITSAKVMREGG--RSKGFGFVCFSTPAEAR 187
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKA 122
+AL +N L KP+ V ++ R R+ + + ++KA
Sbjct: 188 KALSEMNGKILASKPLYVAWAQRKQE-RQVSLAQQYTQRMEKA 229
>gi|7673357|gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 330
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/83 (83%), Positives = 75/83 (90%)
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
I DEKLK+LFSP+G+ITSCKVMRDPSG+S+GSGFVAFS PEEASRAL EMNGKMVVSKPL
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 377 YVALAQRKEDRRARLQVCLLQCR 399
YVALAQRKE+RRARLQ Q R
Sbjct: 61 YVALAQRKEERRARLQAQFSQMR 83
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 50/80 (62%)
Query: 215 TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274
++E L++ F YGTITS VMRD G SK GFV F N ++A+RA+ +NGK K Y
Sbjct: 2 SDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLY 61
Query: 275 VGKAQKKSERELELKHQFEQ 294
V AQ+K ER L+ QF Q
Sbjct: 62 VALAQRKEERRARLQAQFSQ 81
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
I + L + FS +G I SCKV D +G SKG GFV F N E A +A+ ++NG ++ K +
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 183 YVGHFLRKQERDTEINKSKFTNVYVKNLSESTTE 216
YV RK+ER + +++F+ + ++ S
Sbjct: 61 YVALAQRKEERRARL-QAQFSQMRPIAMASSVAP 93
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 35 VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94
++D +L +LF+ G + S +V RD S S G G+V FSN +EA+RAL +N + KP
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGV-SKGSGFVAFSNPEEASRALSEMNGKMVVSKP 59
Query: 95 IRVMYSHR 102
+ V + R
Sbjct: 60 LYVALAQR 67
>gi|320581163|gb|EFW95384.1| poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 716
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 169/346 (48%), Gaps = 46/346 (13%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSL+VGDL+ ++++ L ++FN+ ++SV++ D T SLGYGYVN+SN +A A+E
Sbjct: 180 TSLFVGDLDKSLSELDLKNVFNKYPGLLSVKIPADCQTGNSLGYGYVNYSNEDQANFAME 239
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+T + IR+M S RD S R+ N+F+ NL + + L+D F GN+LSCK
Sbjct: 240 SLNYTTIGSSEIRIMPSLRDKSQRERIGANVFLSNLSSHLTTRQLYDRFRKHGNVLSCKY 299
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD----TEINK 199
+ SK F+ F+++E A + ++ N L+ + VYVG + K++R+ T
Sbjct: 300 DS-----SKQQAFIHFESKEVAYEVVKTYNHTTLDGRLVYVGLHILKKDRELFGATASAS 354
Query: 200 SKFT----------------------------NVYVKNLSESTTEEDLQKSFGEYGTITS 231
SK T +++V+NL + E ++ YG + S
Sbjct: 355 SKLTEKRDISQIPTFSPTFQNTKHKNDISTHYSIFVRNLPLNIEEHVIKSLVEPYGPVLS 414
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ R K+ C+ V N + +AV LN + + ++ +V +A K E+ K +
Sbjct: 415 -VLARKVPKKNGCWALVTLSNQESVDKAVSHLNMVEINKQQLFVTRAIPKEEKSYSRKQE 473
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
+ K + I L+ + +K + FGSI S ++
Sbjct: 474 VQPKYK--------LKILITGLNVNTHKDKFQNWCLTFGSIKSVEL 511
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 133/296 (44%), Gaps = 31/296 (10%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++F+ +LDK++ L + F+ + +LS K+ D G S GYG+V + NE+ A A+E
Sbjct: 181 SLFVGDLDKSLSELDLKNVFNKYPGLLSVKIPADCQTGNSLGYGYVNYSNEDQANFAMES 240
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN + ++ + LR + + I NV++ NLS T L F ++G + S
Sbjct: 241 LNYTTIGSSEIRIMPSLRDKSQRERIG----ANVFLSNLSSHLTTRQLYDRFRKHGNVLS 296
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL----- 286
SK F++FE+ + A V+ N D + YVG K +REL
Sbjct: 297 CKY-----DSSKQQAFIHFESKEVAYEVVKTYNHTTLDGRLVYVGLHILKKDRELFGATA 351
Query: 287 ----ELKHQFE-----------QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
+L + + QN K D +++++NL +I++ +K L P+G
Sbjct: 352 SASSKLTEKRDISQIPTFSPTFQNTKHKNDISTHYSIFVRNLPLNIEEHVIKSLVEPYGP 411
Query: 332 ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
+ S + P + V S E +A+ +N + + L+V A KE++
Sbjct: 412 VLSVLARKVPKK-NGCWALVTLSNQESVDKAVSHLNMVEINKQQLFVTRAIPKEEK 466
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 185/384 (48%), Gaps = 36/384 (9%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + T+LYVG+L A+V +L +LF GQ+V RV D T S GYG+V +S+
Sbjct: 288 GGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSD 347
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYS--------HRDPSLRKSGAGNIFIKNLDKAIDHK 126
+ A+ A++ +N + G+ + V + + PS +++ +++ NL +++
Sbjct: 348 PRCASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTD 406
Query: 127 ALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV- 184
L F FG + + KVA D G SKGYGFVQ+ + A +A+ LNG L++ +++ V
Sbjct: 407 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 466
Query: 185 ---------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
+ + + +N+YV N+ S + L + F +G IT A V+
Sbjct: 467 VSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVV 526
Query: 236 RDGDG-KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
D D +K +GF+ F +S+ A +A+ A+NG + V R L
Sbjct: 527 ADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV--------RVAGLSPSASI 578
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
+ + + LYI NL S+ +K+ LF+PFG IT KV+ ++ V ++
Sbjct: 579 SAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL-----MNLEYSLVWYA 631
Query: 355 TPEEASRALLEMNGKMVVSKPLYV 378
A +A+ M+G MV K L V
Sbjct: 632 DAPSAIKAVQHMDGYMVEGKRLVV 655
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 179/384 (46%), Gaps = 40/384 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++LYV ++ +++ +L +LF G++ RV D T + GYG++ F++++ A +A+
Sbjct: 494 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 553
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGA--------GNIFIKNLDKAIDHKALHDTFSAF 135
+N + G+ I V + PS S ++I NL +++ + + F+ F
Sbjct: 554 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 613
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I KV +L Y V + + SA KA++ ++G ++ K++ V ++ E T
Sbjct: 614 GQIT--KVLMNLE-----YSLVWYADAPSAIKAVQHMDGYMVEGKRLVV----KRSELCT 662
Query: 196 ---------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
I + N+YV + S TE+ F +G + A + R + +G
Sbjct: 663 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYG 717
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE---LKHQFEQNMKEAADKF 303
V F+N AA A++ L+G + V A +E L Q N + D
Sbjct: 718 MVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM- 776
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
NLY+ +L +++E+L LF P G IT KV+ + +G+S+G GFV F+ A+ A
Sbjct: 777 --TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 834
Query: 363 LLEMNGKMVVSKPLYVALAQRKED 386
L MNG + L V +A D
Sbjct: 835 LTHMNGYPLDGHVLEVRIAGVHPD 858
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GG + +LYVG + +++T+ Q DLF G+VV R+ R +R YG V F
Sbjct: 668 AGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR---FQR---YGMVRF 721
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----------------NIF 115
N AA A++ L+ + G + V + P+ + G N++
Sbjct: 722 DNPSCAAAAIDHLDGYQIGGSILAVRVAGL-PAESNAAKGALTSQMSSNEQGQIDMTNLY 780
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+ +L ++++ L D F G I KV + G SKG+GFV+F + SA A+ +NG
Sbjct: 781 VSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNG 840
Query: 175 MLLNDKQVYVGHFL 188
L+ GH L
Sbjct: 841 YPLD------GHVL 848
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 19/142 (13%)
Query: 267 KFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLF 326
+FDD++ ++ K Q+ + Q +KE + NLY+ NL S+ KL +LF
Sbjct: 265 QFDDQDKHLHKKQEHTPPSFP---QDGGKLKEVDN----TNLYVGNLPASVGSHKLIELF 317
Query: 327 SPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA---- 381
PFG I +V+ D +G+S+G GFV +S P AS A+ MNG++V + L V +A
Sbjct: 318 LPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMNGRLVEGRALEVRVAGFPS 377
Query: 382 -------QRKEDRRARLQVCLL 396
KE A+L VC L
Sbjct: 378 SEDNSQQPSKETDMAKLYVCNL 399
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q T+LYV L + V + +L DLF GQ+ +V + T S G+G+V F++A AA
Sbjct: 773 QIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAA 832
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
AL +N PL+G + V + P S + + H +HD A
Sbjct: 833 VALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFY--------SHFTMHDPAKA 879
>gi|123430889|ref|XP_001307992.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121889649|gb|EAX95062.1| hypothetical protein TVAG_428650 [Trichomonas vaginalis G3]
Length = 537
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 151/272 (55%), Gaps = 23/272 (8%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+++ +L + +T + L + G+VV+V L R++ + +V F + A +A++
Sbjct: 11 VHISNLPSGITTDFIKILLQECGEVVNVT----LKERQNGNFAFVTFDTPESALKAIKEF 66
Query: 86 NFTPLNGKPIRVMYSHRD-PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N+T LNG PI + + ++ +L KSG GN++++ LD I+ LH+ F +G ++SCK+
Sbjct: 67 NYTKLNGSPIVITPTTQEYQNLIKSGEGNLYVRGLDVYIEVSQLHELFQTYGEVISCKLP 126
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--- 201
T +G +KGY +VQF + A+KA +LN ++N K++ V + +K+ER + + +
Sbjct: 127 TGTDGLNKGYAYVQFRDPNDAEKARVELNDAVINGKKISVEPY-KKKERPQKTSPASNPR 185
Query: 202 --------FTNVYVKNLSEST-TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
FTN++++NL + E DL F E+G + S ++ DG GF N +
Sbjct: 186 GAPASDDVFTNIFIRNLPSNVRNETDLGNLFSEFGVVISTKMLPDG-----FSGFCNMID 240
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
D A RA++ALNGK D K V +A K ER
Sbjct: 241 HDSAVRAIQALNGKVIDGKVLEVVRAISKEER 272
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 125/275 (45%), Gaps = 14/275 (5%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+ I NL I + G +++ + NG + FV FD ESA KAI++ N
Sbjct: 11 VHISNLPSGITTDFIKILLQECGEVVNVTLKERQNGN---FAFVTFDTPESALKAIKEFN 67
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
LN + + QE I KS N+YV+ L L + F YG + S
Sbjct: 68 YTKLNGSPIVITP--TTQEYQNLI-KSGEGNLYVRGLDVYIEVSQLHELFQTYGEVISCK 124
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
+ DG +K + +V F + +DA +A LN + K+ V + KK ER +
Sbjct: 125 LPTGTDGLNKGYAYVQFRDPNDAEKARVELNDAVINGKKISV-EPYKKKERPQKTSPASN 183
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEK-LKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
A+D N++I+NL ++ +E L LFS FG + S K++ D G S GF
Sbjct: 184 PRGAPASDDVF-TNIFIRNLPSNVRNETDLGNLFSEFGVVISTKMLPD--GFS---GFCN 237
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
+ A RA+ +NGK++ K L V A KE+R
Sbjct: 238 MIDHDSAVRAIQALNGKVIDGKVLEVVRAISKEER 272
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 27/190 (14%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSL--GYGYVNFSNAQEAA 79
G +LYV L+ + SQL++LF G+V+S C+ + L GY YV F + +A
Sbjct: 92 GEGNLYVRGLDVYIEVSQLHELFQTYGEVIS---CKLPTGTDGLNKGYAYVQFRDPNDAE 148
Query: 80 RALEMLNFTPLNGKPIRV-MYSHRD------PSLRKSGAG-------NIFIKNLDKAIDH 125
+A LN +NGK I V Y ++ P+ GA NIFI+NL + +
Sbjct: 149 KARVELNDAVINGKKISVEPYKKKERPQKTSPASNPRGAPASDDVFTNIFIRNLPSNVRN 208
Query: 126 KA-LHDTFSAFGNILSCKVATDLNGQSKGY-GFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
+ L + FS FG ++S K+ D G+ GF + +SA +AI+ LNG +++ K +
Sbjct: 209 ETDLGNLFSEFGVVISTKMLPD------GFSGFCNMIDHDSAVRAIQALNGKVIDGKVLE 262
Query: 184 VGHFLRKQER 193
V + K+ER
Sbjct: 263 VVRAISKEER 272
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 185/384 (48%), Gaps = 36/384 (9%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + T+LYVG+L A+V +L +LF GQ+V RV D T S GYG+V +S+
Sbjct: 200 GGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSD 259
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYS--------HRDPSLRKSGAGNIFIKNLDKAIDHK 126
+ A+ A++ +N + G+ + V + + PS +++ +++ NL +++
Sbjct: 260 PRCASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTD 318
Query: 127 ALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV- 184
L F FG + + KVA D G SKGYGFVQ+ + A +A+ LNG L++ +++ V
Sbjct: 319 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 378
Query: 185 ---------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
+ + + +N+YV N+ S + L + F +G IT A V+
Sbjct: 379 VSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVV 438
Query: 236 RDGDG-KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
D D +K +GF+ F +S+ A +A+ A+NG + V R L
Sbjct: 439 ADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV--------RVAGLSPSASI 490
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
+ + + LYI NL S+ +K+ LF+PFG IT KV+ ++ V ++
Sbjct: 491 SAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL-----MNLEYSLVWYA 543
Query: 355 TPEEASRALLEMNGKMVVSKPLYV 378
A +A+ M+G MV K L V
Sbjct: 544 DAPSAIKAVQHMDGYMVEGKRLVV 567
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 179/384 (46%), Gaps = 40/384 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++LYV ++ +++ +L +LF G++ RV D T + GYG++ F++++ A +A+
Sbjct: 406 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 465
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGA--------GNIFIKNLDKAIDHKALHDTFSAF 135
+N + G+ I V + PS S ++I NL +++ + + F+ F
Sbjct: 466 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 525
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I KV +L Y V + + SA KA++ ++G ++ K++ V ++ E T
Sbjct: 526 GQI--TKVLMNLE-----YSLVWYADAPSAIKAVQHMDGYMVEGKRLVV----KRSELCT 574
Query: 196 ---------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
I + N+YV + S TE+ F +G + A + R + +G
Sbjct: 575 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYG 629
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE---LKHQFEQNMKEAADKF 303
V F+N AA A++ L+G + V A +E L Q N + D
Sbjct: 630 MVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM- 688
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
NLY+ +L +++E+L LF P G IT KV+ + +G+S+G GFV F+ A+ A
Sbjct: 689 --TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 746
Query: 363 LLEMNGKMVVSKPLYVALAQRKED 386
L MNG + L V +A D
Sbjct: 747 LTHMNGYPLDGHVLEVRIAGVHPD 770
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GG + +LYVG + +++T+ Q DLF G+VV R+ R +R YG V F
Sbjct: 580 AGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR---FQR---YGMVRF 633
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----------------NIF 115
N AA A++ L+ + G + V + P+ + G N++
Sbjct: 634 DNPSCAAAAIDHLDGYQIGGSILAVRVAGL-PAESNAAKGALTSQMSSNEQGQIDMTNLY 692
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+ +L ++++ L D F G I KV + G SKG+GFV+F + SA A+ +NG
Sbjct: 693 VSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNG 752
Query: 175 MLLNDKQVYVGHFL 188
L+ GH L
Sbjct: 753 YPLD------GHVL 760
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 19/142 (13%)
Query: 267 KFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLF 326
+FDD++ ++ K Q+ + Q +KE + NLY+ NL S+ KL +LF
Sbjct: 177 QFDDQDKHLHKKQEHTPPSFP---QDGGKLKEVDN----TNLYVGNLPASVGSHKLIELF 229
Query: 327 SPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA---- 381
PFG I +V+ D +G+S+G GFV +S P AS A+ MNG++V + L V +A
Sbjct: 230 LPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMNGRLVEGRALEVRVAGFPS 289
Query: 382 -------QRKEDRRARLQVCLL 396
KE A+L VC L
Sbjct: 290 SEDNSQQPSKETDMAKLYVCNL 311
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q T+LYV L + V + +L DLF GQ+ +V + T S G+G+V F++A AA
Sbjct: 685 QIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAA 744
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
AL +N PL+G + V + P S + + H +HD A
Sbjct: 745 VALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFY--------SHFTMHDPAKA 791
>gi|403164939|ref|XP_003324991.2| hypothetical protein PGTG_06528 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165464|gb|EFP80572.2| hypothetical protein PGTG_06528 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 449
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 137/265 (51%), Gaps = 10/265 (3%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQV--VSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
S++VGDL ++T Q+ +F+Q+ + +S+R R + ++ Y YV + +A++A+ A+
Sbjct: 174 SVFVGDLPGSITHEQIVKVFSQVSPILKISIRYPRSQAIKKLRAYAYVTYHSAEDASTAI 233
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N T GKP RV+ D L+ + NI++ L ++ A HDTFS FG ILS K
Sbjct: 234 REFNQTVFEGKPCRVVRVQHD-DLKSNKEANIYVGGLPPSLTGVAFHDTFSEFGEILSSK 292
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK---QVYVGHFLRKQERDTEINK 199
+ + S +GF+Q+ E A+ AI+K NG L+ K + Q + +
Sbjct: 293 LVVNPKNVSNPFGFIQYATAEEAEIAIQKTNGATLDMKDSTRPISTSLFEGQAKPPR--Q 350
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
F NVY KN+ + T + E+G TS + +D DGK GF NF N++DA +
Sbjct: 351 PPFHNVYFKNIPKDITRRCFDQFCEEFGPTTSTFLKKDADGKPMGIGFANFSNTNDAVKI 410
Query: 260 VEALNGKKFDDKEWYVGKAQKKSER 284
VE + +++ + +A + ER
Sbjct: 411 VEYI--RQYAPMGLHAARAYTRGER 433
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 114/271 (42%), Gaps = 27/271 (9%)
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
TPLN P + ++ R S+ S +F+ +L +I H+ + FS IL +
Sbjct: 155 TPLNHFPPQ--HASRTTSVDHS----VFVGDLPGSITHEQIVKVFSQVSPILKISIRYPR 208
Query: 148 NGQSK---GYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+ K Y +V + + E A AI + N + K V +R Q D + NK N
Sbjct: 209 SQAIKKLRAYAYVTYHSAEDASTAIREFNQTVFEGKPCRV---VRVQHDDLKSNKE--AN 263
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV L S T +F E+G I S+ ++ + S FGF+ + +++A A++ N
Sbjct: 264 IYVGGLPPSLTGVAFHDTFSEFGEILSSKLVVNPKNVSNPFGFIQYATAEEAEIAIQKTN 323
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA-ADKFQGANLYIKNLDDSIDDEKLK 323
G D K+ S R + FE K F N+Y KN+ I
Sbjct: 324 GATLDMKD---------STRPISTS-LFEGQAKPPRQPPFH--NVYFKNIPKDITRRCFD 371
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
Q FG TS + +D G G GF FS
Sbjct: 372 QFCEEFGPTTSTFLKKDADGKPMGIGFANFS 402
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 31/219 (14%)
Query: 184 VGHFLRKQ-ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM---RDGD 239
+ HF + R T ++ S V+V +L S T E + K F + I +
Sbjct: 157 LNHFPPQHASRTTSVDHS----VFVGDLPGSITHEQIVKVFSQVSPILKISIRYPRSQAI 212
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
K + + +V + +++DA+ A+ N F+ K R + ++H ++ KEA
Sbjct: 213 KKLRAYAYVTYHSAEDASTAIREFNQTVFEGKPC----------RVVRVQHDDLKSNKEA 262
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEA 359
N+Y+ L S+ FS FG I S K++ +P +S GF+ ++T EEA
Sbjct: 263 -------NIYVGGLPPSLTGVAFHDTFSEFGEILSSKLVVNPKNVSNPFGFIQYATAEEA 315
Query: 360 SRALLEMNGKMV----VSKPLYVAL--AQRKEDRRARLQ 392
A+ + NG + ++P+ +L Q K R+
Sbjct: 316 EIAIQKTNGATLDMKDSTRPISTSLFEGQAKPPRQPPFH 354
>gi|401625916|gb|EJS43897.1| pes4p [Saccharomyces arboricola H-6]
Length = 611
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 187/386 (48%), Gaps = 59/386 (15%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++GDL VT+ L ++F + VS +VC D T++SLG+GY+NF + +EA +A+E L
Sbjct: 93 LFIGDLHETVTEETLKEIFGKFPSFVSAKVCLDSVTKKSLGHGYLNFDDKEEAEKAMEEL 152
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCK 142
N+T +NGK +R+M S R+ + RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTEINGKEVRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT---EINK 199
+ + K GFV F++E++A+ I+ N K++ G K+ R E K
Sbjct: 213 LDS-----RKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 200 SKF--------------------------------TNVYVKNLSESTTEEDLQKSFGEYG 227
S+ ++++KNL TT +D+ F E G
Sbjct: 268 SRLDSETIIEKEQALNDKKVQRNDGDSKNNLSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I S + + + F+ +++ +D+ RA++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSTATKVKYLWAFITYKSGEDSERAIKRYNNFYFRGKKLLVARAQDKEERAKF 386
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD--PSGIS 345
++ Q + + L+++NL + E LK L +I K+ D +
Sbjct: 387 IESQ------------KISTLFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQMDGYNENSA 433
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMV 371
SG++ F E+A+R +N ++V
Sbjct: 434 TYSGYIKFKNFEDATRIFNFLNNRLV 459
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 132/301 (43%), Gaps = 37/301 (12%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+FI +L + + + L + F F + +S KV D + +S G+G++ FD++E A+KA+E+L
Sbjct: 93 LFIGDLHETVTEETLKEIFGKFPSFVSAKVCLDSVTKKSLGHGYLNFDDKEEAEKAMEEL 152
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST---TEEDLQKSFGEYGTI 229
N +N K+V + LR +T K+ TNV+ NL + T +F YG I
Sbjct: 153 NYTEINGKEVRIMPSLR----NTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKI 208
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG------------- 276
S + D + K GFV FE+ A ++ N F K+ G
Sbjct: 209 LSCKL----DSR-KDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNF 263
Query: 277 ---KAQKKSERELELKHQFEQNMKEAADKFQGANL-------YIKNLDDSIDDEKLKQLF 326
K++ SE +E + + D NL +IKNL + + F
Sbjct: 264 ETQKSRLDSETIIEKEQALNDKKVQRNDGDSKNNLSSSQNSIFIKNLPTITTRDDILNFF 323
Query: 327 SPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
S G I S + + + F+ + + E++ RA+ N K L VA AQ KE+
Sbjct: 324 SEVGPIKSI-YLSTATKVKYLWAFITYKSGEDSERAIKRYNNFYFRGKKLLVARAQDKEE 382
Query: 387 R 387
R
Sbjct: 383 R 383
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARA 259
K +++ +L E+ TEE L++ FG++ + SA V D KS G++NF++ ++A +A
Sbjct: 89 KLVPLFIGDLHETVTEETLKEIFGKFPSFVSAKVCLDSVTKKSLGHGYLNFDDKEEAEKA 148
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL---DDS 316
+E LN + + KE + + + + F +N G N++ NL +
Sbjct: 149 MEELNYTEINGKEVRIMPSLRNT--------TFRKNF--------GTNVFFSNLPLNNPL 192
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
+ FS +G I SCK+ + GFV F E+ +R +++M
Sbjct: 193 LTTRVFYDTFSRYGKILSCKL-----DSRKDIGFVYFED-EKTARNVIKM 236
>gi|410074177|ref|XP_003954671.1| hypothetical protein KAFR_0A00980 [Kazachstania africana CBS 2517]
gi|372461253|emb|CCF55536.1| hypothetical protein KAFR_0A00980 [Kazachstania africana CBS 2517]
Length = 642
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 148/294 (50%), Gaps = 42/294 (14%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T L++G L +VT+S L +LFN+ + SV++C D T++SLGYGY+NFS + E R +E
Sbjct: 95 TPLFIGGLGPHVTESMLKELFNKFSSLYSVKICYDSETKKSLGYGYLNFSGSDEIDRVIE 154
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILS 140
N+T + G I++M S R+ RK+ NIF NL + + + +DTF +G ILS
Sbjct: 155 EFNYTEVFGSEIKIMPSLRNSLYRKNIGTNIFFSNLPLENSELTTRVFYDTFKKYGKILS 214
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG--------------- 185
CK+ K GFV +++++ A++ IEK N ++ G
Sbjct: 215 CKL-----DHRKNIGFVYYEDDKVAREVIEKYNNTTFFGAKILCGLHFDKELRNFPDFEK 269
Query: 186 -------HFLRKQERDTEINKSKFTN-----------VYVKNLSESTTEEDLQKSFGEYG 227
H + + E +T K+ V+VKNL TTE+++ F G
Sbjct: 270 RKSYLDKHIILEDELNTVEGKTSMLTKIKSSLPHPNAVFVKNLPIDTTEDEILDFFSVVG 329
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ S + KS+ + F+ ++ D RA+E L+GKK+ D++ V KA+ +
Sbjct: 330 PVKSVFTSKVLKFKSE-WAFITYKKGSDTERAIEELDGKKYKDRKISVTKAKAR 382
>gi|260656096|pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 83/94 (88%), Gaps = 1/94 (1%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNE 162
DPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +
Sbjct: 3 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 61
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 62 EAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 95
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
N++IKNLD SID++ L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +
Sbjct: 12 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 70
Query: 366 MNGKMVVSKPLYVALAQRKEDRRA 389
MNG ++ + ++V + +++R A
Sbjct: 71 MNGMLLNDRKVFVGRFKSRKEREA 94
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
D + KS N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE
Sbjct: 3 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 61
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
+ A RA+E +NG +D++ +VG+ + + ERE E
Sbjct: 62 EAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 95
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 10 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 67
Query: 82 LEMLNFTPLNGKPIRV 97
+E +N LN + + V
Sbjct: 68 IEKMNGMLLNDRKVFV 83
>gi|400260942|pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
At Ph 6.0
gi|400260943|pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
A Ph 9.0
Length = 115
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%), Gaps = 3/108 (2%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
G+GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AI
Sbjct: 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAI 62
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTT 215
EK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN +T
Sbjct: 63 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGST 110
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
N++IKNLD SID++ L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +
Sbjct: 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 64
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARL 391
MNG ++ + ++V + +++R A L
Sbjct: 65 MNGMLLNDRKVFVGRFKSRKEREAEL 90
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 11/110 (10%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE + A RA+E +
Sbjct: 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 65
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
NG +D++ +VG+ + + ERE EL + A +F N+YIKN
Sbjct: 66 NGMLLNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNF 105
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
G+ ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A R
Sbjct: 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAER 60
Query: 81 ALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNL 119
A+E +N LN + + V + R + GA N++IKN
Sbjct: 61 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNF 105
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 111/395 (28%), Positives = 186/395 (47%), Gaps = 47/395 (11%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + T+LYVG+L A+V +L +LF GQ+V RV D T S GYG+V +S+
Sbjct: 200 GGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSD 259
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYS--------HRDPSLRKSGAGNIFIKNLDKAIDHK 126
+ A+ A++ +N + G ++V + + PS +++ +++ NL +++
Sbjct: 260 PRCASEAIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTD 318
Query: 127 ALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV- 184
L F FG + + KVA D G SKGYGFVQ+ + A +A+ LNG L++ +++ V
Sbjct: 319 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 378
Query: 185 --------------------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
+ + + +N+YV N+ S + L + F
Sbjct: 379 VSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFL 438
Query: 225 EYGTITSAVVMRDGDG-KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G IT A V+ D D +K +GF+ F +S+ A +A+ A+NG + V
Sbjct: 439 PFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV-------- 490
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
R L + + + LYI NL S+ +K+ LF+PFG IT KV+
Sbjct: 491 RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL----- 543
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
++ V ++ A++A+ M+G MV K L V
Sbjct: 544 MNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVV 578
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 179/384 (46%), Gaps = 40/384 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++LYV ++ +++ +L +LF G++ RV D T + GYG++ F++++ A +A+
Sbjct: 417 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 476
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGA--------GNIFIKNLDKAIDHKALHDTFSAF 135
+N + G+ I V + PS S ++I NL +++ + + F+ F
Sbjct: 477 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 536
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I KV +L Y V + + SA KA++ ++G ++ K++ V ++ E T
Sbjct: 537 GQI--TKVLMNLE-----YSLVWYADAPSATKAVQHMDGYMVEGKRLVV----KRSELCT 585
Query: 196 ---------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
I + N+YV + S TE+ F +G + A + R + +G
Sbjct: 586 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYG 640
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE---LKHQFEQNMKEAADKF 303
V F+N AA A++ L+G + V A +E L Q N + D
Sbjct: 641 MVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM- 699
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
NLY+ +L +++E+L LF P G IT KV+ + +G+S+G GFV F+ A+ A
Sbjct: 700 --TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 757
Query: 363 LLEMNGKMVVSKPLYVALAQRKED 386
L MNG + L V +A D
Sbjct: 758 LTHMNGYPLDGHVLEVRIAGVHPD 781
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GG + +LYVG + +++T+ Q DLF G+VV R+ R +R YG V F
Sbjct: 591 AGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR---FQR---YGMVRF 644
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----------------NIF 115
N AA A++ L+ + G + V + P+ + G N++
Sbjct: 645 DNPSCAAAAIDHLDGYQIGGSILAVRVAGL-PAESNAAKGALTSQMSSNEQGQIDMTNLY 703
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+ +L ++++ L D F G I KV + G SKG+GFV+F + SA A+ +NG
Sbjct: 704 VSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNG 763
Query: 175 MLLNDKQVYVGHFL 188
L+ GH L
Sbjct: 764 YPLD------GHVL 771
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q T+LYV L + V + +L DLF GQ+ +V + T S G+G+V F++A AA
Sbjct: 696 QIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAA 755
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
AL +N PL+G + V + P S + + H +HD A
Sbjct: 756 VALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFY--------SHFTMHDPAKA 802
>gi|14571727|emb|CAC42820.1| Poly(A)-binding protein cytoplasmic 5 [Mus musculus]
Length = 119
Score = 144 bits (362), Expect = 1e-31, Method: Composition-based stats.
Identities = 73/120 (60%), Positives = 88/120 (73%), Gaps = 1/120 (0%)
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
LGYGYVNF +A AL +NF +NGKP R+M+S D LRKSG GNIFIKNLDK ID
Sbjct: 1 LGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTID 60
Query: 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
++AL FSAFGNILSCKV D NG SKGY +V FD+ +A +AI +NG+ LN++QVYV
Sbjct: 61 NRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHVNGVRLNNRQVYV 119
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
+G+VNF DA A+ +N + K + + +Q K
Sbjct: 3 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLR----------------KSG 46
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
N++IKNLD +ID+ L LFS FG+I SCKV+ D +G S+G +V F + A+RA+
Sbjct: 47 VGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIW 105
Query: 365 EMNGKMVVSKPLYV 378
+NG + ++ +YV
Sbjct: 106 HVNGVRLNNRQVYV 119
Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 153 GYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSE 212
GYG+V F A+ A+ +N L+N K L + D + KS N+++KNL +
Sbjct: 2 GYGYVNFRFPADAEWALNTMNFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDK 57
Query: 213 STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
+ L F +G I S V+ D +G SK + +V+F++ A RA+ +NG + ++++
Sbjct: 58 TIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHVNGVRLNNRQ 116
Query: 273 WYV 275
YV
Sbjct: 117 VYV 119
Score = 40.4 bits (93), Expect = 1.4, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +L+ + + L+ LF+ G ++S +V C D ++ GY YV+F + A R
Sbjct: 46 GVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNGSK---GYAYVHFDSLAAANR 102
Query: 81 ALEMLNFTPLNGKPIRV 97
A+ +N LN + + V
Sbjct: 103 AIWHVNGVRLNNRQVYV 119
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/395 (28%), Positives = 186/395 (47%), Gaps = 47/395 (11%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + T+LYVG+L A+V +L +LF GQ+V RV D T S GYG+V +S+
Sbjct: 284 GGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSD 343
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYS--------HRDPSLRKSGAGNIFIKNLDKAIDHK 126
+ A+ A++ +N + G ++V + + PS +++ +++ NL +++
Sbjct: 344 PRCASEAIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTD 402
Query: 127 ALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV- 184
L F FG + + KVA D G SKGYGFVQ+ + A +A+ LNG L++ +++ V
Sbjct: 403 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 462
Query: 185 --------------------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
+ + + +N+YV N+ S + L + F
Sbjct: 463 VSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFL 522
Query: 225 EYGTITSAVVMRDGDG-KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G IT A V+ D D +K +GF+ F +S+ A +A+ A+NG + V
Sbjct: 523 PFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV-------- 574
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
R L + + + LYI NL S+ +K+ LF+PFG IT KV+
Sbjct: 575 RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL----- 627
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
++ V ++ A++A+ M+G MV K L V
Sbjct: 628 MNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVV 662
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 179/384 (46%), Gaps = 40/384 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++LYV ++ +++ +L +LF G++ RV D T + GYG++ F++++ A +A+
Sbjct: 501 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 560
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGA--------GNIFIKNLDKAIDHKALHDTFSAF 135
+N + G+ I V + PS S ++I NL +++ + + F+ F
Sbjct: 561 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 620
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I KV +L Y V + + SA KA++ ++G ++ K++ V ++ E T
Sbjct: 621 GQI--TKVLMNLE-----YSLVWYADAPSATKAVQHMDGYMVEGKRLVV----KRSELCT 669
Query: 196 ---------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
I + N+YV + S TE+ F +G + A + R + +G
Sbjct: 670 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYG 724
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE---LKHQFEQNMKEAADKF 303
V F+N AA A++ L+G + V A +E L Q N + D
Sbjct: 725 MVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM- 783
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
NLY+ +L +++E+L LF P G IT KV+ + +G+S+G GFV F+ A+ A
Sbjct: 784 --TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 841
Query: 363 LLEMNGKMVVSKPLYVALAQRKED 386
L MNG + L V +A D
Sbjct: 842 LTHMNGYPLDGHVLEVRIAGVHPD 865
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GG + +LYVG + +++T+ Q DLF G+VV R+ R +R YG V F
Sbjct: 675 AGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR---FQR---YGMVRF 728
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----------------NIF 115
N AA A++ L+ + G + V + P+ + G N++
Sbjct: 729 DNPSCAAAAIDHLDGYQIGGSILAVRVAGL-PAESNAAKGALTSQMSSNEQGQIDMTNLY 787
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+ +L ++++ L D F G I KV + G SKG+GFV+F + SA A+ +NG
Sbjct: 788 VSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNG 847
Query: 175 MLLNDKQVYVGHFL 188
L+ GH L
Sbjct: 848 YPLD------GHVL 855
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q T+LYV L + V + +L DLF GQ+ +V + T S G+G+V F++A AA
Sbjct: 780 QIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAA 839
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
AL +N PL+G + V + P S + + H +HD A
Sbjct: 840 VALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFY--------SHFTMHDPAKA 886
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 88/108 (81%), Gaps = 1/108 (0%)
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
R+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G
Sbjct: 1 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GG 59
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 60 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 107
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
KQ+R I + + N+YVKNL + +E L+K F +GTITSA VM +G G+SK FGFV
Sbjct: 13 KQDR---ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVC 68
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 69 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 115
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KNLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++
Sbjct: 24 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEM 82
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER ++ TN Y++ ++
Sbjct: 83 NGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 116
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYV +L+ + D +L F+ G + S +V + RS G+G+V FS+ +EA +A+ +
Sbjct: 25 LYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEM 82
Query: 86 NFTPLNGKPIRVMYSHR 102
N + KP+ V + R
Sbjct: 83 NGRIVATKPLYVALAQR 99
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/395 (28%), Positives = 186/395 (47%), Gaps = 47/395 (11%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + T+LYVG+L A+V +L +LF GQ+V RV D T S GYG+V +S+
Sbjct: 287 GGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSD 346
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYS--------HRDPSLRKSGAGNIFIKNLDKAIDHK 126
+ A+ A++ +N + G+ + V + + PS +++ +++ NL +++
Sbjct: 347 PRCASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTD 405
Query: 127 ALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV- 184
L F FG + + KVA D G SKGYGFVQ+ + A +A+ LNG L++ +++ V
Sbjct: 406 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 465
Query: 185 --------------------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
+ + + +N+YV N+ S + L + F
Sbjct: 466 VSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFL 525
Query: 225 EYGTITSAVVMRDGDG-KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G IT A V+ D D +K +GF+ F +S+ A +A+ A+NG + V
Sbjct: 526 PFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV-------- 577
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
R L + + + LYI NL S+ +K+ LF+PFG IT KV+
Sbjct: 578 RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL----- 630
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
++ V ++ A++A+ M+G MV K L V
Sbjct: 631 MNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVV 665
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 179/384 (46%), Gaps = 40/384 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++LYV ++ +++ +L +LF G++ RV D T + GYG++ F++++ A +A+
Sbjct: 504 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 563
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGA--------GNIFIKNLDKAIDHKALHDTFSAF 135
+N + G+ I V + PS S ++I NL +++ + + F+ F
Sbjct: 564 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 623
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I KV +L Y V + + SA KA++ ++G ++ K++ V ++ E T
Sbjct: 624 GQIT--KVLMNLE-----YSLVWYADAPSATKAVQHMDGYMVEGKRLVV----KRSELCT 672
Query: 196 ---------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
I + N+YV + S TE+ F +G + A + R + +G
Sbjct: 673 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYG 727
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE---LKHQFEQNMKEAADKF 303
V F+N AA A++ L+G + V A +E L Q N + D
Sbjct: 728 MVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM- 786
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
NLY+ +L +++E+L LF P G IT KV+ + +G+S+G GFV F+ A+ A
Sbjct: 787 --TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 844
Query: 363 LLEMNGKMVVSKPLYVALAQRKED 386
L MNG + L V +A D
Sbjct: 845 LTHMNGYPLDGHVLEVRIAGVHPD 868
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GG + +LYVG + +++T+ Q DLF G+VV R+ R +R YG V F
Sbjct: 678 AGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR---FQR---YGMVRF 731
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----------------NIF 115
N AA A++ L+ + G + V + P+ + G N++
Sbjct: 732 DNPSCAAAAIDHLDGYQIGGSILAVRVAGL-PAESNAAKGALTSQMSSNEQGQIDMTNLY 790
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+ +L ++++ L D F G I KV + G SKG+GFV+F + SA A+ +NG
Sbjct: 791 VSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNG 850
Query: 175 MLLNDKQVYVGHFL 188
L+ GH L
Sbjct: 851 YPLD------GHVL 858
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 19/142 (13%)
Query: 267 KFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLF 326
+FDD++ ++ K Q+ + Q +KE + NLY+ NL S+ KL +LF
Sbjct: 264 QFDDQDKHLHKKQEHTPPSFP---QDGGKLKEVDN----TNLYVGNLPASVGSHKLIELF 316
Query: 327 SPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA---- 381
PFG I +V+ D +G+S+G GFV +S P AS A+ MNG++V + L V +A
Sbjct: 317 LPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMNGRLVEGRALEVRVAGFPS 376
Query: 382 -------QRKEDRRARLQVCLL 396
KE A+L VC L
Sbjct: 377 SEDNSQQPSKETDMAKLYVCNL 398
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q T+LYV L + V + +L DLF GQ+ +V + T S G+G+V F++A AA
Sbjct: 783 QIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAA 842
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
AL +N PL+G + V + P S + + H +HD A
Sbjct: 843 VALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFY--------SHFTMHDPAKA 889
>gi|255720292|ref|XP_002556426.1| KLTH0H12958p [Lachancea thermotolerans]
gi|238942392|emb|CAR30564.1| KLTH0H12958p [Lachancea thermotolerans CBS 6340]
Length = 639
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 146/293 (49%), Gaps = 42/293 (14%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SL++GDL+ VT+ L F+ + SV++C D T++SLGYGY+NF++AQEA A+E
Sbjct: 94 SSLFIGDLDKGVTEKMLLHAFSGFKTLASVKICIDSETKKSLGYGYLNFTSAQEADEAIE 153
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILS 140
++ L GK +R+M S R+ RK+ N+F NL + A+ + +++F +G +LS
Sbjct: 154 KFSYVKLFGKEVRIMPSMRNSYFRKNIGTNVFFTNLPLENPALTTRVFYESFRKYGRVLS 213
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT---EI 197
CK+ + K GFV F+++ SA+KAI+ N ++ G K R + E
Sbjct: 214 CKL-----DRRKNIGFVYFESDISAKKAIDDFNSREYFGNKIACGLHFDKDIRKSPQFEK 268
Query: 198 NKSKF------------------------------TNVYVKNLSESTTEEDLQKSFGEYG 227
+SK T+V+VKNL EDL F + G
Sbjct: 269 RRSKLEGLTVIKESLESEACTDSNSLGDSPGPTPSTSVHVKNLPIGVCNEDLLNYFSKVG 328
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
I S V D + +GF+ ++ S D RA+E LNG F K V +A K
Sbjct: 329 PIKS-VYTSKADVYTTSWGFITYKRSRDTIRALEELNGAIFMGKRVEVTRAVK 380
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 136/301 (45%), Gaps = 35/301 (11%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++FI +LDK + K L FS F + S K+ D +S GYG++ F + + A +AIEK
Sbjct: 95 SLFIGDLDKGVTEKMLLHAFSGFKTLASVKICIDSETKKSLGYGYLNFTSAQEADEAIEK 154
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNL---SESTTEEDLQKSFGEYGT 228
+ + L K+V + +R ++ K+ TNV+ NL + + T +SF +YG
Sbjct: 155 FSYVKLFGKEVRIMPSMR----NSYFRKNIGTNVFFTNLPLENPALTTRVFYESFRKYGR 210
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD----------DKEWYVGKA 278
+ S + R K GFV FE+ A +A++ N +++ DK+
Sbjct: 211 VLSCKLDR-----RKNIGFVYFESDISAKKAIDDFNSREYFGNKIACGLHFDKDIRKSPQ 265
Query: 279 QKKSERELE----LKHQFEQ-------NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+K +LE +K E ++ ++ ++++KNL + +E L FS
Sbjct: 266 FEKRRSKLEGLTVIKESLESEACTDSNSLGDSPGPTPSTSVHVKNLPIGVCNEDLLNYFS 325
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
G I S + + GF+ + + RAL E+NG + + K + V A +
Sbjct: 326 KVGPIKSVYTSK-ADVYTTSWGFITYKRSRDTIRALEELNGAIFMGKRVEVTRAVKYNGE 384
Query: 388 R 388
R
Sbjct: 385 R 385
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR-DLSTRRSLGYGYV 70
N G + +TS++V +L V + L + F+++G + SV + D+ T +G++
Sbjct: 292 NSLGDSPGPTPSTSVHVKNLPIGVCNEDLLNYFSKVGPIKSVYTSKADVYT---TSWGFI 348
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN 113
+ +++ RALE LN GK + V + + RKS + N
Sbjct: 349 TYKRSRDTIRALEELNGAIFMGKRVEVTRAVKYNGERKSTSTN 391
>gi|440293231|gb|ELP86374.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 538
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 180/356 (50%), Gaps = 33/356 (9%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+++V L NVT+S LY + QV SV V R+ ++ Y VN + + A +A+
Sbjct: 14 TVFVSGLTKNVTESLLYKEISAKFESQVASVHVSRNEHYDTAIAY--VNMNTHEAAKKAI 71
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E +N ++GKP+ + +S +D R N+F+KN+ K + K + D F FG I+S K
Sbjct: 72 ETMNGALIDGKPVNMFWSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVK 131
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
++ + NG S G+G+V++ E+A KA+E N + K + K E+ T K+K
Sbjct: 132 LSVNENGASNGFGYVKYRTIEAALKAVE--NAAEIKAKIGEDNFIVAKFEKQT---KNKK 186
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITS------AVVMRDGDGKSKCFGFVNFENSDDA 256
TN+YV N+ +S EE K F +G + V+ D GFV+FEN +DA
Sbjct: 187 TNLYVSNIDKSVNEEQFVKYFETFGPLRKNPDNKFQVLFASKDEYPTAMGFVDFENEEDA 246
Query: 257 ARAVEALNGKKFDDKE----WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+A+ A E +Y+ K ++K RE +LK+ + M K++ N+Y+K
Sbjct: 247 QKALTAPKNNVLGQGEIKVVYYMSKKERK--REYQLKNN--EIMASIKGKYKEFNMYVKT 302
Query: 313 LDD---SIDDEKLKQLFSPFGSITSCKVM---RDPSGISRGSGFVAFSTPEEASRA 362
+D S D +++ F+ G I S ++ + P+ ++ +V F++ E +A
Sbjct: 303 SNDSEHSTSDAEIRSAFADCGEIYSIRIKYFNKSPTDVA----YVCFTSQEGYDKA 354
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 133/292 (45%), Gaps = 38/292 (13%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGY----GFVQFDNEESAQKAI 169
+F+ L K + L+ SA +VA+ +++ Y +V + E+A+KAI
Sbjct: 15 VFVSGLTKNVTESLLYKEISA---KFESQVASVHVSRNEHYDTAIAYVNMNTHEAAKKAI 71
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E +NG L++ K V + L+ ++ TE TN++VKN+ ++ +++++Q F +G I
Sbjct: 72 ETMNGALIDGKPVNMFWSLKDFKQRTETQ----TNLFVKNIKKTVSQKEMQDVFMTFGEI 127
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVE--ALNGKKFDDKEWYVGKAQKKSERELE 287
S + + +G S FG+V + + A +AVE A K + + V K +K++
Sbjct: 128 ISVKLSVNENGASNGFGYVKYRTIEAALKAVENAAEIKAKIGEDNFIVAKFEKQT----- 182
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK------VMRDP 341
K + NLY+ N+D S+++E+ + F FG + +
Sbjct: 183 --------------KNKKTNLYVSNIDKSVNEEQFVKYFETFGPLRKNPDNKFQVLFASK 228
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQV 393
GFV F E+A +AL ++ + V K++R+ Q+
Sbjct: 229 DEYPTAMGFVDFENEEDAQKALTAPKNNVLGQGEIKVVYYMSKKERKREYQL 280
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 111/236 (47%), Gaps = 37/236 (15%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L+V +++ V+ ++ D+F G+++SV++ + S G+GYV + + A +A+E
Sbjct: 101 TNLFVKNIKKTVSQKEMQDVFMTFGEIISVKLSVN-ENGASNGFGYVKYRTIEAALKAVE 159
Query: 84 MLNFTPLNGKPIRVMYSHRD------PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG- 136
N I+ + K+ N+++ N+DK+++ + F FG
Sbjct: 160 -------NAAEIKAKIGEDNFIVAKFEKQTKNKKTNLYVSNIDKSVNEEQFVKYFETFGP 212
Query: 137 ------NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
N A+ + GFV F+NEE AQKA+ +L ++ V +++ K
Sbjct: 213 LRKNPDNKFQVLFASK-DEYPTAMGFVDFENEEDAQKALTAPKNNVLGQGEIKVVYYMSK 271
Query: 191 QERDTEIN------------KSKFTNVYVK--NLSE-STTEEDLQKSFGEYGTITS 231
+ER E K K N+YVK N SE ST++ +++ +F + G I S
Sbjct: 272 KERKREYQLKNNEIMASIKGKYKEFNMYVKTSNDSEHSTSDAEIRSAFADCGEIYS 327
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 27/174 (15%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
D + NK+ F + KN++ES +++ F + S V R+ + +VN
Sbjct: 8 DFDENKTVFVSGLTKNVTESLLYKEISAKFE--SQVASVHVSRN-EHYDTAIAYVNMNTH 64
Query: 254 DDAARAVEALNGKKFDDKE----WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
+ A +A+E +NG D K W + ++++E + NL+
Sbjct: 65 EAAKKAIETMNGALIDGKPVNMFWSLKDFKQRTETQ--------------------TNLF 104
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
+KN+ ++ ++++ +F FG I S K+ + +G S G G+V + T E A +A+
Sbjct: 105 VKNIKKTVSQKEMQDVFMTFGEIISVKLSVNENGASNGFGYVKYRTIEAALKAV 158
>gi|440293224|gb|ELP86367.1| polyadenylate-binding protein, putative [Entamoeba invadens IP1]
Length = 519
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 174/353 (49%), Gaps = 28/353 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+++V L NVT+S LY + QV SV V R+ YVN + + A +A+
Sbjct: 16 TIFVSSLSKNVTESLLYKEISAKFESQVASVHVSRN--EHYDTAIAYVNMNTHEAAKKAI 73
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E +N ++GK + + +S +D R N+F+KN+ K + K + D F FG I+S K
Sbjct: 74 ETMNGALIDGKTVNMFWSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVK 133
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
++ + NG S G+G+V++ E+A KA+E N + K + K E+ T K+K
Sbjct: 134 LSVNENGASNGFGYVKYRTIEAALKAVE--NAAEIKAKIGEDNFIVAKFEKQT---KNKK 188
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITS------AVVMRDGDGKSKCFGFVNFENSDDA 256
TN+YV N+ +S EE K F +G + V+ D GFV+FEN +DA
Sbjct: 189 TNLYVSNIDKSVNEEQFVKYFETFGPLRKNPDNKFQVLFACDDKHPTAMGFVDFENEEDA 248
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERE---LELKHQFEQNMKEAADKFQGANLYIKNL 313
+A+ A E V +SER L+ + + N++ K++ N+YI L
Sbjct: 249 QKALTAPKNNVLGQGEIKVDYYMSRSERSRVWLQKSLEIKSNIQ---GKYKDFNMYINTL 305
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVM---RDPSGISRGSGFVAFSTPEEASRAL 363
+ D +++ F+ G I S +V + P+ I+ FV F++ E ++A+
Sbjct: 306 KEPTSDAEIRSAFADCGEIYSVRVKYYEKVPTSIA----FVCFTSQEAFNKAM 354
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 110/236 (46%), Gaps = 34/236 (14%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L+V +++ V+ ++ D+F G+++SV++ + S G+GYV + + A +A+E
Sbjct: 103 TNLFVKNIKKTVSQKEMQDVFMTFGEIISVKLSVN-ENGASNGFGYVKYRTIEAALKAVE 161
Query: 84 MLNFTPLNGKPIRVMYSHRDPSL------RKSGAGNIFIKNLDKAIDHKALHDTFSAFG- 136
N I+ + + K+ N+++ N+DK+++ + F FG
Sbjct: 162 -------NAAEIKAKIGEDNFIVAKFEKQTKNKKTNLYVSNIDKSVNEEQFVKYFETFGP 214
Query: 137 ------NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
N A D + GFV F+NEE AQKA+ +L ++ V +++ +
Sbjct: 215 LRKNPDNKFQVLFACD-DKHPTAMGFVDFENEEDAQKALTAPKNNVLGQGEIKVDYYMSR 273
Query: 191 QER-------DTEIN-----KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
ER EI K K N+Y+ L E T++ +++ +F + G I S V
Sbjct: 274 SERSRVWLQKSLEIKSNIQGKYKDFNMYINTLKEPTSDAEIRSAFADCGEIYSVRV 329
>gi|324525699|gb|ADY48582.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 121
Score = 142 bits (358), Expect = 3e-31, Method: Composition-based stats.
Identities = 64/106 (60%), Positives = 83/106 (78%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+ G V+S+RVCRD TRRSLGY YVNF +A R
Sbjct: 16 YPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAER 75
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
AL+ +NF + GKPIR+M+S RDPS+R+SGAGNIFIKNLDK+ID+K
Sbjct: 76 ALDTMNFDVMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNK 121
Score = 47.8 bits (112), Expect = 0.010, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FS G + S +V RD + S G +V F P +A RAL
Sbjct: 19 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 78
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
MN ++ KP+ + +QR R
Sbjct: 79 TMNFDVMYGKPIRIMWSQRDPSMR 102
Score = 47.8 bits (112), Expect = 0.011, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L + FS+ G +LS +V D + +S GY +V F A++A++
Sbjct: 19 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 78
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSES 213
+N ++ K + + +RD + +S N+++KNL +S
Sbjct: 79 TMNFDVMYGKPIRI----MWSQRDPSMRRSGAGNIFIKNLDKS 117
Score = 44.3 bits (103), Expect = 0.095, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G + S V RD +S + +VNF+ DA RA++
Sbjct: 20 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 79
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+N K + +Q+ + +M+ + N++IKNLD SID++
Sbjct: 80 MNFDVMYGKPIRIMWSQR------------DPSMRRSG----AGNIFIKNLDKSIDNK 121
>gi|297733643|emb|CBI14890.3| unnamed protein product [Vitis vinifera]
Length = 357
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 71/77 (92%)
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
SN Q+AARAL++LNFTPLNGKP+R+MYSHRDPS+RKSG NIFIKNLDK IDHKALHDTF
Sbjct: 274 SNPQDAARALDVLNFTPLNGKPLRIMYSHRDPSIRKSGTENIFIKNLDKGIDHKALHDTF 333
Query: 133 SAFGNILSCKVATDLNG 149
SAFGNILSCK ATD +G
Sbjct: 334 SAFGNILSCKEATDASG 350
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 16/93 (17%)
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N DAARA++ LN + K + + + + +++++ + N++IK
Sbjct: 275 NPQDAARALDVLNFTPLNGKPLRIMYSHR------------DPSIRKSGTE----NIFIK 318
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
NLD ID + L FS FG+I SCK D SG+
Sbjct: 319 NLDKGIDHKALHDTFSAFGNILSCKEATDASGM 351
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
N + A +A++ LN LN K + + + RD I KS N+++KNL + + L
Sbjct: 275 NPQDAARALDVLNFTPLNGKPLRIMY----SHRDPSIRKSGTENIFIKNLDKGIDHKALH 330
Query: 221 KSFGEYGTITSAVVMRDGDGKSKC 244
+F +G I S D G C
Sbjct: 331 DTFSAFGNILSCKEATDASGMQGC 354
>gi|298712686|emb|CBJ48711.1| polyadenylate-binding protein, putative [Ectocarpus siliculosus]
Length = 80
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 73/79 (92%)
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
MRD DGKSKCFGFVNFEN+DDAA+AVEALNGKK DDKEWYVGKAQKKSERE ELK +FEQ
Sbjct: 1 MRDMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQ 60
Query: 295 NMKEAADKFQGANLYIKNL 313
+MKE ADK+QGANLY+KN
Sbjct: 61 SMKETADKYQGANLYVKNF 79
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 12/77 (15%)
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-------- 197
D++G+SK +GFV F+N + A KA+E LNG ++DK+ YVG +K ER+ E+
Sbjct: 3 DMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQSM 62
Query: 198 ----NKSKFTNVYVKNL 210
+K + N+YVKN
Sbjct: 63 KETADKYQGANLYVKNF 79
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397
MRD G S+ GFV F ++A++A+ +NGK V K YV AQ+K +R L++ Q
Sbjct: 1 MRDMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQ 60
>gi|426228299|ref|XP_004008250.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 551
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 103/175 (58%), Gaps = 27/175 (15%)
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKFTNV 205
NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +FTNV
Sbjct: 89 NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 147
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD---------- 255
Y+KN E +E L+ FG++G S VM D GKSK FGFV+FE +D
Sbjct: 148 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKVMMEGGR 207
Query: 256 --------------AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 208 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 262
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 105/174 (60%), Gaps = 34/174 (19%)
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL + A
Sbjct: 91 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR--------AK 142
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF-------- 353
+F N+YIKN + +DDE+LK LF FG S KVM D SG S+G GFV+F
Sbjct: 143 EF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 200
Query: 354 ----------------STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
S+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 201 VMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 254
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 37/186 (19%)
Query: 58 DLSTRR--SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA--- 111
DL ++ S GYG+V+F + A RA+E +N LN + + V + R + GA
Sbjct: 83 DLPNKKNGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 142
Query: 112 --GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQ--- 166
N++IKN + +D + L D F FG LS KV TD +G+SKG+GFV F+ E AQ
Sbjct: 143 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKVM 202
Query: 167 ---------------------KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNV 205
KA+ ++NG ++ K +YV RK+ER ++ TN
Sbjct: 203 MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQ 257
Query: 206 YVKNLS 211
Y++ ++
Sbjct: 258 YMQRMA 263
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 25/111 (22%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR------------ 62
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S +
Sbjct: 138 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 195
Query: 63 -----------RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102
RS G+G+V FS+ +EA +A+ +N + KP+ V + R
Sbjct: 196 EDAQKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 246
>gi|363750089|ref|XP_003645262.1| hypothetical protein Ecym_2746 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888895|gb|AET38445.1| Hypothetical protein Ecym_2746 [Eremothecium cymbalariae
DBVPG#7215]
Length = 681
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 147/299 (49%), Gaps = 41/299 (13%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L++GDL+ VT+ L D FN+ VS ++C D +T++SLGYGY+NFSN ++A R +E
Sbjct: 120 VALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLGYGYLNFSNEEDAERVIE 179
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILS 140
N+ P+ G+ +R+M S R+ RK+ N+F NL + A+ + +D F +G ILS
Sbjct: 180 EFNYIPIFGREVRIMPSLRNSFYRKNIGTNVFFSNLPLENLALTTRVFYDAFKKYGKILS 239
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HFLRKQERDTEINK 199
CK+ + K GFV F+ + SA++AI + NG + G HF R + E K
Sbjct: 240 CKL-----DRRKNIGFVYFEKDSSAKQAIAEYNGKQFYGNNILCGIHFDRNVRKSPEFEK 294
Query: 200 SKF-------------------------------TNVYVKNLSESTTEEDLQKSFGEYGT 228
K V++KNL ++ + L F + G
Sbjct: 295 RKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFIKNLPLNSDSDLLLDYFSQIGP 354
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
+ S + + + + F+ F+ DA A+++LN + + + +AQK + +++
Sbjct: 355 VKS-IFTSNVSKLNSAWAFITFKKGSDAQDAIDSLNHSQLLGRTIELSRAQKNFQSDID 412
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 144/311 (46%), Gaps = 30/311 (9%)
Query: 95 IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG-QSKG 153
+++ S P+L +FI +LD+ + K L DTF+ F + +S K+ D N +S G
Sbjct: 103 VKLGRSKDSPTLTSKKLVALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLG 162
Query: 154 YGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-FTNVYVKNLSE 212
YG++ F NEE A++ IE+ N + + ++V + LR I + F+N+ ++NL+
Sbjct: 163 YGYLNFSNEEDAERVIEEFNYIPIFGREVRIMPSLRNSFYRKNIGTNVFFSNLPLENLAL 222
Query: 213 STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
+T +F +YG I S + R K GFV FE A +A+ NGK+F
Sbjct: 223 TT--RVFYDAFKKYGKILSCKLDR-----RKNIGFVYFEKDSSAKQAIAEYNGKQFYGNN 275
Query: 273 WYVGKAQKKSER---ELELKHQFEQNMK--------------EAADKFQGAN---LYIKN 312
G ++ R E E + ++M + K +G + ++IKN
Sbjct: 276 ILCGIHFDRNVRKSPEFEKRKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFIKN 335
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
L + D + L FS G + S + S ++ F+ F +A A+ +N ++
Sbjct: 336 LPLNSDSDLLLDYFSQIGPVKSI-FTSNVSKLNSAWAFITFKKGSDAQDAIDSLNHSQLL 394
Query: 373 SKPLYVALAQR 383
+ + ++ AQ+
Sbjct: 395 GRTIELSRAQK 405
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 113/312 (36%), Gaps = 74/312 (23%)
Query: 35 VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94
+T YD F + G+++S ++ R R+++G+ Y F A +A+ N G
Sbjct: 222 LTTRVFYDAFKKYGKILSCKLDR----RKNIGFVY--FEKDSSAKQAIAEYNGKQFYGNN 275
Query: 95 IRVMYSHRDPSLRKSG-------------------------------------AGNIFIK 117
I + H D ++RKS +FIK
Sbjct: 276 I-LCGIHFDRNVRKSPEFEKRKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFIK 334
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NL D L D FS G + S ++++ + + F+ F AQ AI+ LN L
Sbjct: 335 NLPLNSDSDLLLDYFSQIGPVKSI-FTSNVSKLNSAWAFITFKKGSDAQDAIDSLNHSQL 393
Query: 178 NDKQVYVGHFLRKQERD------------------------TEINKSKFTNVYVKNLSES 213
+ + + + + D ++ N S VY+ +LS
Sbjct: 394 LGRTIELSRAQKNFQSDIDAANAGTGNTGGSIKSADSEGSSSQHNSSYKLTVYLSSLSSI 453
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF-GFVNFENSDDAARAVEALNGKKFDDK- 271
+E+ LQ E T + +R D + F GFV + +DA R E LN K D
Sbjct: 454 CSEQFLQCFCAEERIKTKRISIRFYDEDTLTFSGFVQCQTRNDANRLFELLNDKLLGDST 513
Query: 272 ---EWYVGKAQK 280
W K K
Sbjct: 514 VKASWKPSKEAK 525
>gi|18677184|gb|AAL78224.1|AF345796_1 hypothetical protein Hgg-30 [Heterodera glycines]
Length = 219
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 97/130 (74%)
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
++ G + ++++ V +AQKKSER+ ELK ++EQ E ++QG NLY+KNL D+I+DE
Sbjct: 5 SVPGSEKVEQKFTVCRAQKKSERQAELKRRYEQYKAERIQRYQGVNLYVKNLHDTINDET 64
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ F +G+ITS KVM D G S+G GFV F +EA++A++EMN K++ +KPLYVALA
Sbjct: 65 LRSNFESYGNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVEMNNKIIENKPLYVALA 124
Query: 382 QRKEDRRARL 391
QRKEDR+A+L
Sbjct: 125 QRKEDRKAQL 134
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
+Q + I + + N+YVKNL ++ +E L+ +F YG ITSA VM D G+SK FGFV
Sbjct: 36 EQYKAERIQRYQGVNLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGRSKGFGFVC 95
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FE +D+A +AV +N K ++K YV AQ+K +R+ +L Q+ Q +
Sbjct: 96 FEKADEATKAVVEMNNKIIENKPLYVALAQRKEDRKAQLASQYMQRL 142
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KNL I+ + L F ++GNI S KV D +G+SKG+GFV F+ + A KA+ ++
Sbjct: 50 NLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVEM 109
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
N ++ +K +YV RK++R K++ + Y++ L+
Sbjct: 110 NNKIIENKPLYVALAQRKEDR-----KAQLASQYMQRLA 143
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ +LYV +L + D L F G + S +V D RS G+G+V F A EA
Sbjct: 45 RYQGVNLYVKNLHDTINDETLRSNFESYGNITSAKVMCD-EHGRSKGFGFVCFEKADEAT 103
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL 119
+A+ +N + KP+ V + R RK+ + +++ L
Sbjct: 104 KAVVEMNNKIIENKPLYVALAQRKED-RKAQLASQYMQRL 142
>gi|410730871|ref|XP_003980256.1| hypothetical protein NDAI_0G05970 [Naumovozyma dairenensis CBS 421]
gi|401780433|emb|CCK73580.1| hypothetical protein NDAI_0G05970 [Naumovozyma dairenensis CBS 421]
Length = 611
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 183/387 (47%), Gaps = 60/387 (15%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
TT LY+G L +VT+ L++ F + S+++CRD T SLGYGY+NFSN+ EA + +
Sbjct: 100 TTPLYIGGLSKDVTEETLFEAFEDYKTLASIKICRDSVTNESLGYGYLNFSNSVEATKLI 159
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNIL 139
+ N+T L G I++M S R+ RK+ N+F NL +K + + +DTF +G IL
Sbjct: 160 DDYNYTNLFGNEIKIMPSMRNTLYRKNIGTNVFFSNLPLENKQLTTRKFYDTFKKYGEIL 219
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER---DTE 196
SCK+ + K GFV F+N+++A +AI+ N + ++ G K+ R D +
Sbjct: 220 SCKLDS-----RKNIGFVYFENDKAALQAIKDYNNKVFFGNKIICGIHFDKEIRTFPDFD 274
Query: 197 INKS-------------------KFTN-----------VYVKNLSESTTEEDLQKSFGEY 226
KS KF V++KNL +T ++++ F +
Sbjct: 275 KRKSYLDSQLIIEDELEAGGEFLKFKQEPKCIVPHPNAVFIKNLPMTTNDDEILDFFSKI 334
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G + S + S + FV ++ S D A++ L+ F D+ V KA+ K
Sbjct: 335 GPVKSVFASQVLKYNS-LWAFVTYKKSSDTELAIQKLDQTYFKDRAISVTKAKSK----- 388
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP--SGI 344
K F+ + K+ +Y+KNL I +E+ + I K+ DP I
Sbjct: 389 --KTNFKIHDKKT--------VYLKNL-SPICNERFIERICLQERIRVQKISVDPISPDI 437
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMV 371
+GFV T +A++ M+ +++
Sbjct: 438 LTNTGFVTCKTEVDANKLFNFMDKRLI 464
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 25/193 (12%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
K K T +Y+ LS+ TEE L ++F +Y T+ S + RD +S +G++NF NS +A
Sbjct: 97 KPKTTPLYIGGLSKDVTEETLFEAFEDYKTLASIKICRDSVTNESLGYGYLNFSNSVEAT 156
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL---D 314
+ ++ N E + + + + + +N+ G N++ NL +
Sbjct: 157 KLIDDYNYTNLFGNEIKIMPSMRNT--------LYRKNI--------GTNVFFSNLPLEN 200
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
+ K F +G I SCK+ + GFV F + A +A+ + N K+
Sbjct: 201 KQLTTRKFYDTFKKYGEILSCKL-----DSRKNIGFVYFENDKAALQAIKDYNNKVFFGN 255
Query: 375 PLYVALAQRKEDR 387
+ + KE R
Sbjct: 256 KIICGIHFDKEIR 268
>gi|302308066|ref|NP_984845.2| AEL016Cp [Ashbya gossypii ATCC 10895]
gi|299789279|gb|AAS52669.2| AEL016Cp [Ashbya gossypii ATCC 10895]
gi|374108067|gb|AEY96974.1| FAEL016Cp [Ashbya gossypii FDAG1]
Length = 678
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 145/299 (48%), Gaps = 41/299 (13%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L++GDL+ VT+ L D FN+ VS ++C D +T++SLGYGY+NFSN ++A R +E
Sbjct: 116 VALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLGYGYLNFSNEEDAERVIE 175
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILS 140
N+ P+ G+ +R+M S R+ RK+ N+F NL + A+ + +D F FG ILS
Sbjct: 176 EFNYIPIFGREVRIMPSLRNSFYRKNIGTNVFFSNLPLENLALTTRVFYDAFKKFGKILS 235
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HFLRKQERDTEINK 199
CK+ + K GFV F+ + +A++AI + NG + G HF R + E K
Sbjct: 236 CKL-----DRRKNIGFVYFEKDSAAKQAIAEYNGKEFFGNNILCGIHFDRNVRKSPEFEK 290
Query: 200 SKF-------------------------------TNVYVKNLSESTTEEDLQKSFGEYGT 228
K V++KNL + + L F + G
Sbjct: 291 RKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFIKNLPLNPDSDLLLDYFSQIGP 350
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
+ S + + + + F+ F+ DA A++ LN + + + +AQK + +++
Sbjct: 351 VKS-IFTSNVSKLNSAWAFITFKKGSDAQDAIDNLNHSQLLGRTIELSRAQKNFQTDID 408
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 144/311 (46%), Gaps = 30/311 (9%)
Query: 95 IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG-QSKG 153
+++ S P+L +FI +LD+ + K L DTF+ F + +S K+ D N +S G
Sbjct: 99 VKLGRSKDSPTLTSKKLVALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLG 158
Query: 154 YGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-FTNVYVKNLSE 212
YG++ F NEE A++ IE+ N + + ++V + LR I + F+N+ ++NL+
Sbjct: 159 YGYLNFSNEEDAERVIEEFNYIPIFGREVRIMPSLRNSFYRKNIGTNVFFSNLPLENLAL 218
Query: 213 STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
+T +F ++G I S + R K GFV FE A +A+ NGK+F
Sbjct: 219 TT--RVFYDAFKKFGKILSCKLDR-----RKNIGFVYFEKDSAAKQAIAEYNGKEFFGNN 271
Query: 273 WYVGKAQKKSER---ELELKHQFEQNMK--------------EAADKFQGAN---LYIKN 312
G ++ R E E + ++M + K +G + ++IKN
Sbjct: 272 ILCGIHFDRNVRKSPEFEKRKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFIKN 331
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
L + D + L FS G + S + S ++ F+ F +A A+ +N ++
Sbjct: 332 LPLNPDSDLLLDYFSQIGPVKSI-FTSNVSKLNSAWAFITFKKGSDAQDAIDNLNHSQLL 390
Query: 373 SKPLYVALAQR 383
+ + ++ AQ+
Sbjct: 391 GRTIELSRAQK 401
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 113/312 (36%), Gaps = 74/312 (23%)
Query: 35 VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94
+T YD F + G+++S ++ R R+++G+ Y F A +A+ N G
Sbjct: 218 LTTRVFYDAFKKFGKILSCKLDR----RKNIGFVY--FEKDSAAKQAIAEYNGKEFFGNN 271
Query: 95 IRVMYSHRDPSLRKSG-------------------------------------AGNIFIK 117
I + H D ++RKS +FIK
Sbjct: 272 I-LCGIHFDRNVRKSPEFEKRKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFIK 330
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NL D L D FS G + S ++++ + + F+ F AQ AI+ LN L
Sbjct: 331 NLPLNPDSDLLLDYFSQIGPVKSI-FTSNVSKLNSAWAFITFKKGSDAQDAIDNLNHSQL 389
Query: 178 NDKQVYVGHFLRKQERD------------------------TEINKSKFTNVYVKNLSES 213
+ + + + + D T+ + S VY+ +LS
Sbjct: 390 LGRTIELSRAQKNFQTDIDAANAGAGNNSSTTRSNDSDPCSTQHSSSYKLTVYLSSLSSI 449
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF-GFVNFENSDDAARAVEALNGKKFDDK- 271
+E+ LQ E T + +R D + F GFV + +DA R E LN K D
Sbjct: 450 CSEQFLQCFCAEERIKTKRISIRFYDEATLTFSGFVQCQTRNDANRLFELLNNKLLGDST 509
Query: 272 ---EWYVGKAQK 280
W K K
Sbjct: 510 VKASWKPSKEAK 521
>gi|351699217|gb|EHB02136.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 205
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 85/120 (70%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A + SL VGDL ++ ++ LY+ F++ G V+ +RVC D+ TRRSLG+ YV+F
Sbjct: 3 AAVRSYPVASLSVGDLHSDAAEAVLYEKFSRAGPVLPIRVCGDVITRRSLGHAYVSFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
EA RAL+ +NF + GK I +M+ +DPSL KSG GN+FIKNLDK+ID+KAL+DTFSA
Sbjct: 63 AEAERALDTMNFDGIKGKQIYIMWPQKDPSLTKSGVGNVFIKNLDKSIDNKALYDTFSAL 122
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 105 SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEE 163
++R ++ + +L L++ FS G +L +V D + +S G+ +V F
Sbjct: 4 AVRSYPVASLSVGDLHSDAAEAVLYEKFSRAGPVLPIRVCGDVITRRSLGHAYVSFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N + KQ+Y+ ++D + KS NV++KNL +S + L +F
Sbjct: 64 EAERALDTMNFDGIKGKQIYI----MWPQKDPSLTKSGVGNVFIKNLDKSIDNKALYDTF 119
>gi|123975938|ref|XP_001314386.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121896695|gb|EAY01839.1| hypothetical protein TVAG_002940 [Trichomonas vaginalis G3]
Length = 307
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 146/269 (54%), Gaps = 19/269 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+++V +L + T + LF++ G V++V L + + Y +V F++ +EA +A+
Sbjct: 17 AIHVSNLPISATVEFIRTLFSECGTVINVF----LKNKPTGSYCFVEFADKEEAEKAVRD 72
Query: 85 LNFTPLNGKPIRVMYSHRDPSLR-KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
N+T LNG+ I + ++ R SG GN+F++ +D++I+ LH+ FS FG ++SCK+
Sbjct: 73 FNYTKLNGESIVITLTNHGIMQRIVSGEGNLFVRGIDESIEAPQLHELFSHFGEVISCKI 132
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF----LRKQERDTEIN- 198
LNG+ +GY +VQF N +A+++L +N K + + F +R+ + TE N
Sbjct: 133 PV-LNGKPRGYAYVQFANPADGDRAMKELADSTINGKAITIEKFINRGMRQPNKATEQNI 191
Query: 199 --KSKFTNVYVKNLSEST-TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
FTN+++KNL ES T DL + F EYG + SA ++ + K GF + +
Sbjct: 192 ATDPTFTNIFIKNLPESINTLLDLLRLFQEYGQVVSARIVPE-----KRSGFAKMIDHES 246
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSER 284
A RAV LNG+ ++ SER
Sbjct: 247 AVRAVLGLNGRVIYGHTISCCRSLSLSER 275
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 128/274 (46%), Gaps = 25/274 (9%)
Query: 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDN 161
R P LR+ I + NL + + + FS G +++ + N + Y FV+F +
Sbjct: 7 RTP-LRQPKDNAIHVSNLPISATVEFIRTLFSECGTVINVFLK---NKPTGSYCFVEFAD 62
Query: 162 EESAQKAIEKLNGMLLNDKQVYV---GHFLRKQERDTEINKSKFTNVYVKNLSESTTEED 218
+E A+KA+ N LN + + + H + ++ E N++V+ + ES
Sbjct: 63 KEEAEKAVRDFNYTKLNGESIVITLTNHGIMQRIVSGE------GNLFVRGIDESIEAPQ 116
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L + F +G + S + +GK + + +V F N D RA++ L + K + K
Sbjct: 117 LHELFSHFGEVISCKI-PVLNGKPRGYAYVQFANPADGDRAMKELADSTINGKAITIEKF 175
Query: 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD-EKLKQLFSPFGSITSCKV 337
+ R + EQN+ A D N++IKNL +SI+ L +LF +G + S ++
Sbjct: 176 INRGMR--QPNKATEQNI--ATDP-TFTNIFIKNLPESINTLLDLLRLFQEYGQVVSARI 230
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
+ + + SGF E A RA+L +NG+++
Sbjct: 231 VPE-----KRSGFAKMIDHESAVRAVLGLNGRVI 259
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 29/196 (14%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L+V ++ ++ QL++LF+ G+V+S ++ + + GY YV F+N + RA
Sbjct: 99 GEGNLFVRGIDESIEAPQLHELFSHFGEVISCKI--PVLNGKPRGYAYVQFANPADGDRA 156
Query: 82 LEMLNFTPLNGKPIRV-MYSHR---------------DPSLRKSGAGNIFIKNLDKAIDH 125
++ L + +NGK I + + +R DP+ NIFIKNL ++I+
Sbjct: 157 MKELADSTINGKAITIEKFINRGMRQPNKATEQNIATDPTF-----TNIFIKNLPESINT 211
Query: 126 KA-LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
L F +G ++S ++ + K GF + + ESA +A+ LNG ++ +
Sbjct: 212 LLDLLRLFQEYGQVVSARIVPE-----KRSGFAKMIDHESAVRAVLGLNGRVIYGHTISC 266
Query: 185 GHFLRKQERDTEINKS 200
L ER +N++
Sbjct: 267 CRSLSLSERAAFMNRN 282
>gi|123449065|ref|XP_001313255.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121895132|gb|EAY00326.1| hypothetical protein TVAG_307720 [Trichomonas vaginalis G3]
Length = 274
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 141/269 (52%), Gaps = 21/269 (7%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG-YGYVNFSNAQEAARALEM 84
++V +L N TD L F G V++V S R+ G + ++ F N + A RA+
Sbjct: 9 IHVSNLPPNATDDFLRSFFQDCGNVLNVS-----SKHRANGNFAFIQFDNKESAIRAVAN 63
Query: 85 LNFTPLNGKPIRVMYSHRD-PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
N+T LNG+PI + Y+ + + SG GNI IK LD+ I+ LH+ FS FG ++SCKV
Sbjct: 64 YNYTKLNGEPIIITYASIEYMRIIHSGLGNICIKGLDENIEASQLHELFSNFGEVISCKV 123
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--INKSK 201
G+++G+ ++QF N A +A ++L +N K + + +++K + +N+
Sbjct: 124 PMQY-GKNRGFAYIQFKNPMDADRARQELADATINGKPISIEAYVKKDNPNKPQYVNRKS 182
Query: 202 -----FTNVYVKNLSEST-TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
FTN++++NL +S + DL F ++G + SA ++ D K GF N + D
Sbjct: 183 GMNDVFTNIFIRNLPDSVRSLADLVTLFVDFGPVISARIILD-----KKAGFCNMADHDS 237
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSER 284
A RA+ LNGK +A K ER
Sbjct: 238 AVRALNGLNGKILYGNTLITCRALTKEER 266
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 123/277 (44%), Gaps = 18/277 (6%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I + NL L F GN+L+ NG + F+QFDN+ESA +A+ N
Sbjct: 9 IHVSNLPPNATDDFLRSFFQDCGNVLNVSSKHRANGN---FAFIQFDNKESAIRAVANYN 65
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
LN + + + + + R I S N+ +K L E+ L + F +G + S
Sbjct: 66 YTKLNGEPIIITYASIEYMR---IIHSGLGNICIKGLDENIEASQLHELFSNFGEVISCK 122
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
V GK++ F ++ F+N DA RA + L + K + KK K Q+
Sbjct: 123 VPMQY-GKNRGFAYIQFKNPMDADRARQELADATINGKPISIEAYVKKDNPN---KPQYV 178
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDD-EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
D F N++I+NL DS+ L LF FG + S +++ D + +GF
Sbjct: 179 NRKSGMNDVF--TNIFIRNLPDSVRSLADLVTLFVDFGPVISARIILD-----KKAGFCN 231
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
+ + A RAL +NGK++ L A KE+R A
Sbjct: 232 MADHDSAVRALNGLNGKILYGNTLITCRALTKEERLA 268
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 19/184 (10%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++ + L+ N+ SQL++LF+ G+V+S +V R G+ Y+ F N +A RA
Sbjct: 90 GLGNICIKGLDENIEASQLHELFSNFGEVISCKVPMQYGKNR--GFAYIQFKNPMDADRA 147
Query: 82 LEMLNFTPLNGKPIRV-MYSHRD----PSL--RKSGAG----NIFIKNLDKAIDHKA-LH 129
+ L +NGKPI + Y +D P RKSG NIFI+NL ++ A L
Sbjct: 148 RQELADATINGKPISIEAYVKKDNPNKPQYVNRKSGMNDVFTNIFIRNLPDSVRSLADLV 207
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
F FG ++S ++ D K GF + +SA +A+ LNG +L + L
Sbjct: 208 TLFVDFGPVISARIILD-----KKAGFCNMADHDSAVRALNGLNGKILYGNTLITCRALT 262
Query: 190 KQER 193
K+ER
Sbjct: 263 KEER 266
>gi|406602053|emb|CCH46373.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 694
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 109/179 (60%), Gaps = 5/179 (2%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE 170
GNI+++ L I + L F FG I S K+ D G+SKGYGF+ + + SA AI
Sbjct: 128 PGNIYVRGLGPEITTEDLFKIFEPFGEITSSKIVNDEFGRSKGYGFINYSDGSSADDAIS 187
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
KLNG+L+N ++Y+ H + K+ER I+ KS FTN+Y+KNL T + + F ++G
Sbjct: 188 KLNGLLVNGSKLYLNHHIAKKERIQRIDFEKSNFTNLYIKNLPIDYTIDQFESLFAKFGE 247
Query: 229 ITSAVV--MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY-VGKAQKKSER 284
I+S+ + + DGD SK FGF+NF+N + A A+E+LN + ++ V +AQ++ ER
Sbjct: 248 ISSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSRAQRRDER 306
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 97/192 (50%), Gaps = 13/192 (6%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+YV+ L T EDL K F +G ITS+ ++ D G+SK +GF+N+ + A A+ L
Sbjct: 130 NIYVRGLGPEITTEDLFKIFEPFGEITSSKIVNDEFGRSKGYGFINYSDGSSADDAISKL 189
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NG + + Y+ K ER + FE K NLYIKNL ++ +
Sbjct: 190 NGLLVNGSKLYLNHHIAKKERIQRI--DFE--------KSNFTNLYIKNLPIDYTIDQFE 239
Query: 324 QLFSPFGSITSCKV--MRDPSGISRGSGFVAFSTPEEASRALLEMNG-KMVVSKPLYVAL 380
LF+ FG I+S + + D S+ GF+ F E A A+ +N ++ ++ L V+
Sbjct: 240 SLFAKFGEISSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSR 299
Query: 381 AQRKEDRRARLQ 392
AQR+++R +
Sbjct: 300 AQRRDERNEQFH 311
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358
A D+ Q +NLY++NL SIDD L F+PFG I S K+M G SRG GFV F T E
Sbjct: 419 APDQ-QPSNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPE 477
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
ASRAL+ M+G ++ + L+V+ AQ+ +R
Sbjct: 478 ASRALIAMHGNVLHGQMLHVSFAQKNNKKR 507
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+YV L +T L+ +F G++ S ++ D RS GYG++N+S+ A A+ L
Sbjct: 131 IYVRGLGPEITTEDLFKIFEPFGEITSSKIVND-EFGRSKGYGFINYSDGSSADDAISKL 189
Query: 86 NFTPLNGKPIRVMYSHRDP--------SLRKSGAGNIFIKNL--DKAIDHKALHDTFSAF 135
N +NG ++ +H KS N++IKNL D ID F+ F
Sbjct: 190 NGLLVNGS--KLYLNHHIAKKERIQRIDFEKSNFTNLYIKNLPIDYTIDQ--FESLFAKF 245
Query: 136 GNILSCKVATDLNG---QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ-VYVGHFLRKQ 191
G I S DLN SK +GF+ F N ESA AIE LN ++ Q + V R+
Sbjct: 246 GEI-SSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSRAQRRD 304
Query: 192 ERDTEIN 198
ER+ + +
Sbjct: 305 ERNEQFH 311
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
+N+YV+NL+ S + L SF +G I SA +M +G+S+ +GFV F S +A+RA+ A
Sbjct: 425 SNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALIA 484
Query: 263 LNGKKFDDKEWYVGKAQKKSER 284
++G + +V AQK +++
Sbjct: 485 MHGNVLHGQMLHVSFAQKNNKK 506
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE 170
N++++NL +ID LH +F+ FG I+S K+ T G+S+GYGFV F A +A+
Sbjct: 424 PSNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALI 483
Query: 171 KLNGMLLNDKQVYV 184
++G +L+ + ++V
Sbjct: 484 AMHGNVLHGQMLHV 497
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++LYV +L ++ DS L+ F G +VS ++ S GYG+V F + EA+RAL
Sbjct: 425 SNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMT-TDEGESRGYGFVCFRTSPEASRALI 483
Query: 84 MLNFTPLNGKPIRVMYSHRD 103
++ L+G+ + V ++ ++
Sbjct: 484 AMHGNVLHGQMLHVSFAQKN 503
>gi|254584953|ref|XP_002498044.1| ZYRO0G00814p [Zygosaccharomyces rouxii]
gi|238940938|emb|CAR29111.1| ZYRO0G00814p [Zygosaccharomyces rouxii]
Length = 654
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 144/294 (48%), Gaps = 43/294 (14%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T +L++GDL+ + + L +F + + SV+VC D T +SLGYGY+NFS Q+ A
Sbjct: 102 TIALFIGDLDEQIDEEILIQIFKKFKSLTSVKVCTDAETGKSLGYGYLNFSRRQDTLAAT 161
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNIL 139
E N+ P+ GK +R+M S R+ RK+ NIF NL + + + +DTF +GNIL
Sbjct: 162 EEFNYRPIFGKEVRIMPSLRNTFYRKNIGTNIFFSNLPLENSNLTTRVFYDTFKVYGNIL 221
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HF---LRK----Q 191
SCK+ + K GF+ FDN+ +A+ I++ NG ++ G HF LRK +
Sbjct: 222 SCKL-----DKRKNIGFIYFDNDHAARVVIKEFNGSEFFGNKILCGIHFDKELRKFPEFE 276
Query: 192 ER-----DTEINKSKFT---------------------NVYVKNLSESTTEEDLQKSFGE 225
+R D I K + T ++VKNL S ++++ F
Sbjct: 277 KRKSSLNDITIPKEQLTLGPTDAKTVEHDSTQHLPHPNAIFVKNLPPSCPDDEILDYFSN 336
Query: 226 YGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
G + S V + FV ++ D +AV+ +G +F ++ V KA+
Sbjct: 337 LGPVKS-VFSSTSHKYESSWAFVTYKKGSDTNKAVKIYHGAQFKGRKLSVIKAE 389
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 25/188 (13%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEAL 263
+++ +L E EE L + F ++ ++TS V D + GKS +G++NF D A E
Sbjct: 105 LFIGDLDEQIDEEILIQIFKKFKSLTSVKVCTDAETGKSLGYGYLNFSRRQDTLAATEEF 164
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL---DDSIDDE 320
N + KE + + L++ F + K G N++ NL + ++
Sbjct: 165 NYRPIFGKEVRIMPS---------LRNTFYR-------KNIGTNIFFSNLPLENSNLTTR 208
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
F +G+I SCK+ + + GF+ F A + E NG + +
Sbjct: 209 VFYDTFKVYGNILSCKLDK-----RKNIGFIYFDNDHAARVVIKEFNGSEFFGNKILCGI 263
Query: 381 AQRKEDRR 388
KE R+
Sbjct: 264 HFDKELRK 271
>gi|343959022|dbj|BAK63366.1| ELAV-like protein 1 [Pan troglodytes]
Length = 305
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 138/291 (47%), Gaps = 29/291 (9%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
G T+L V L N+T +L LF+ +G+V S ++ RD SLGYG+VN+ A++A R
Sbjct: 17 IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAER 76
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
A+ LN L K I+V Y+ PS N++I L + + K + D FS FG I++
Sbjct: 77 AINTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIIN 134
Query: 141 CKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG-------------MLLNDKQVY--- 183
+V D G S+G F++FD A++AI NG N V+
Sbjct: 135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNPVHHQA 194
Query: 184 ---------VGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
V H + N S +++ NL + E L + FG +G +T+ V
Sbjct: 195 QRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKV 254
Query: 235 MRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+RD K K FGFV N ++AA A+ +LNG + DK V KS +
Sbjct: 255 IRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 305
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 138/294 (46%), Gaps = 22/294 (7%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168
G N+ + L + + L FS+ G + S K+ D + G S GYGFV + + A++A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
I LNG+ L K + V + +E+ K N+Y+ L + T++D++ F +G
Sbjct: 78 INTLNGLRLQSKTIKVSY----ARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 229 ITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG----------- 276
I ++ V+ D G S+ F+ F+ +A A+ + NG K +
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNPVH 191
Query: 277 -KAQKKSERELELKHQFE-QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITS 334
+AQ+ + + H + + G ++I NL D+ L Q+F PFG++T+
Sbjct: 192 HQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTN 251
Query: 335 CKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
KV+RD + +G GFV + EEA+ A+ +NG + K L V+ K +
Sbjct: 252 VKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 305
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 288 LKHQFEQNMKEAADKFQG-ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
+ + +E +M E G NL + L ++ ++L+ LFS G + S K++RD +G S
Sbjct: 1 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
G GFV + T ++A RA+ +NG + SK + V+ A+
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97
>gi|156837090|ref|XP_001642579.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
gi|156113126|gb|EDO14721.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
Length = 264
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 80/105 (76%)
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
ELK Q+E E K+QG NL++KNLDDS+DDEKL++ FSPFG+I S KVMR G S+
Sbjct: 2 ELKKQYEAARLEKMTKYQGVNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSK 61
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
GFV FSTPEEA+RA+ E N ++V KPLYVA+AQRKE RRA+L
Sbjct: 62 NFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKEVRRAQL 106
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 188 LRKQ---ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
L+KQ R ++ K + N++VKNL +S +E LQ+ F +GTI SA VMR DGKSK
Sbjct: 3 LKKQYEAARLEKMTKYQGVNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKN 62
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A RA+ N + K YV AQ+K R +L Q +
Sbjct: 63 FGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKEVRRAQLAQQVQ 111
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+F+KNLD ++D + L + FS FG I+S KV +G+SK +GFV F E A +AI +
Sbjct: 22 NLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKNFGFVCFSTPEEATRAITEK 81
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEI 197
N ++ K +YV RK+ R ++
Sbjct: 82 NQQIVAGKPLYVAIAQRKEVRRAQL 106
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ +V D +L + F+ G ++S +V R +S +G+V FS +EA RA+
Sbjct: 21 VNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRT-EDGKSKNFGFVCFSTPEEATRAIT 79
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A + +N
Sbjct: 80 EKNQQIVAGKPLYVAIAQRKEVRRAQLAQQVQARN 114
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/387 (27%), Positives = 181/387 (46%), Gaps = 48/387 (12%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYV +L ++T +L F G+++ +V RD +T + GYG+V +SN+ EAA A+
Sbjct: 308 SSLYVRNLSLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAII 367
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGA--------------GNIFIKNLDKAIDHKALH 129
LN + GK + V S P+L S N+++ N+ +ID K L
Sbjct: 368 HLNGHLVEGKKMEVRVSGVSPALSNSAVESHTDARLIKEIDMANLYVCNIPTSIDTKKLI 427
Query: 130 DTFSAFGNILSCKVATDLNGQS-KG-YGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-- 185
+ F FG I +VA S KG YGFV+F + + A +AI ++G L+ + + V
Sbjct: 428 EIFLPFGKITHARVAAHQGTYSGKGRYGFVKFADSQCAAEAITLMDGALVEGETLVVRVA 487
Query: 186 -----------HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
H L EINKS+ +Y+ NL ST + + K F +G I+ V+
Sbjct: 488 GLSSSASSPAVHGLPIPS--PEINKSR---IYITNLPRSTNADMMVKLFVPFGQISKVVM 542
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ + V + + A +A++ ++G K V ++ S H Q
Sbjct: 543 NLE-------YSLVYYADVASAVKAIKHMDGYMIGGKRLVVRRSD--SCPTDAAGHTSTQ 593
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
++ + + AN+++ + +++ ++L +LF PFG I +V + +G G F+
Sbjct: 594 SLGKEVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVFQH-----QGYGMFRFN 648
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALA 381
P A+ A+ MNG + L V +A
Sbjct: 649 DPFSAAAAIDHMNGYQIGGSALVVRVA 675
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 151/289 (52%), Gaps = 26/289 (8%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+++ NL ++ L + F FG I+ KVA + G SKGYGFV++D+ SA AI +
Sbjct: 205 NLYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAINR 264
Query: 172 LNGMLLNDK--QVYVGHFLRKQERDTEINKSK----------FTNVYVKNLSESTTEEDL 219
+NG L++ K +V V + + S+ +++YV+NLS S T+E+L
Sbjct: 265 MNGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRNLSLSMTKEEL 324
Query: 220 QKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV--- 275
+ F +G I A V RD G +K +GFV + NS +AA A+ LNG + K+ V
Sbjct: 325 LQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLVEGKKMEVRVS 384
Query: 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
G + S +E H + +KE ANLY+ N+ SID +KL ++F PFG IT
Sbjct: 385 GVSPALSNSAVE-SHTDARLIKE----IDMANLYVCNIPTSIDTKKLIEIFLPFGKITHA 439
Query: 336 KVMRDPSGISRGS---GFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
+V G G GFV F+ + A+ A+ M+G +V + L V +A
Sbjct: 440 RVAAH-QGTYSGKGRYGFVKFADSQCAAEAITLMDGALVEGETLVVRVA 487
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 107/394 (27%), Positives = 176/394 (44%), Gaps = 42/394 (10%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + T+LYVG+L A+V +L +LF G++V +V + T S GYG+V + +
Sbjct: 195 GGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDD 254
Query: 75 AQEAARALEMLNFTPLNGKPIRVMY-----SHRDPSLRKSG-----------AGNIFIKN 118
A A+ +N ++GK + V S +PS++ +++++N
Sbjct: 255 PHSATAAINRMNGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRN 314
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
L ++ + L F FG I+ KV D G +KGYGFV++ N A AI LNG L+
Sbjct: 315 LSLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLV 374
Query: 178 NDKQVYV----------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG 227
K++ V + I + N+YV N+ S + L + F +G
Sbjct: 375 EGKKMEVRVSGVSPALSNSAVESHTDARLIKEIDMANLYVCNIPTSIDTKKLIEIFLPFG 434
Query: 228 TITSA-VVMRDG--DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
IT A V G GK + +GFV F +S AA A+ ++G + + V A S
Sbjct: 435 KITHARVAAHQGTYSGKGR-YGFVKFADSQCAAEAITLMDGALVEGETLVVRVAGLSSSA 493
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
H + + + + +YI NL S + + + +LF PFG I+ + + S
Sbjct: 494 SSPAVH----GLPIPSPEINKSRIYITNLPRSTNADMMVKLFVPFGQISKVVMNLEYS-- 547
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
V ++ A +A+ M+G M+ K L V
Sbjct: 548 -----LVYYADVASAVKAIKHMDGYMIGGKRLVV 576
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 104/389 (26%), Positives = 172/389 (44%), Gaps = 52/389 (13%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG-YGYVNFSNAQEAARALEM 84
LYV ++ ++ +L ++F G++ RV T G YG+V F+++Q AA A+ +
Sbjct: 412 LYVCNIPTSIDTKKLIEIFLPFGKITHARVAAHQGTYSGKGRYGFVKFADSQCAAEAITL 471
Query: 85 LNFTPLNGKPIRVMYS-----------H----RDPSLRKSGAGNIFIKNLDKAIDHKALH 129
++ + G+ + V + H P + KS I+I NL ++ + +
Sbjct: 472 MDGALVEGETLVVRVAGLSSSASSPAVHGLPIPSPEINKS---RIYITNLPRSTNADMMV 528
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV----- 184
F FG I KV +L Y V + + SA KAI+ ++G ++ K++ V
Sbjct: 529 KLFVPFGQI--SKVVMNLE-----YSLVYYADVASAVKAIKHMDGYMIGGKRLVVRRSDS 581
Query: 185 ------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
GH Q E+ + NV+V + + + L + F +G I V
Sbjct: 582 CPTDAAGH-TSTQSLGKEVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVF--- 637
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL-----ELKHQFE 293
+ + +G F + AA A++ +NG + V A + + +LK Q
Sbjct: 638 --QHQGYGMFRFNDPFSAAAAIDHMNGYQIGGSALVVRVAGLPNPGDFSAATDDLKLQMP 695
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVA 352
N D ANLY+ +L I EKL ++F P G IT +V+ D +GIS+G GFV
Sbjct: 696 GNEGRQIDM---ANLYVCHLPLYITTEKLIEIFLPCGQITQARVVTDRYTGISKGFGFVR 752
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALA 381
F+ A+ AL MNG + L V +A
Sbjct: 753 FADTYSAAVALTHMNGYPLEGHILEVRIA 781
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 9/116 (7%)
Query: 267 KFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLF 326
+FDD++ ++GK Q E L L Q +KE + NLY+ NL S+ KL +LF
Sbjct: 173 QFDDQDKHLGKRQ---EHTLPLS-QEGGKLKEVDN----TNLYVGNLPASVGSHKLIELF 224
Query: 327 SPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
PFG I KV + +G+S+G GFV + P A+ A+ MNG++V K L V +A
Sbjct: 225 LPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAINRMNGRLVDGKILEVRVA 280
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 31/193 (16%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + +++VG + + V QL +LF GQ+V VRV + GYG F++
Sbjct: 596 GKEVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVFQH------QGYGMFRFND 649
Query: 75 AQEAARALEMLNFTPLNGKPIRVMY-----------SHRDPSLRKSG-------AGNIFI 116
AA A++ +N + G + V + D L+ G N+++
Sbjct: 650 PFSAAAAIDHMNGYQIGGSALVVRVAGLPNPGDFSAATDDLKLQMPGNEGRQIDMANLYV 709
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
+L I + L + F G I +V TD G SKG+GFV+F + SA A+ +NG
Sbjct: 710 CHLPLYITTEKLIEIFLPCGQITQARVVTDRYTGISKGFGFVRFADTYSAAVALTHMNGY 769
Query: 176 LLNDKQVYVGHFL 188
L GH L
Sbjct: 770 PLE------GHIL 776
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G Q +LYV L +T +L ++F GQ+ RV D T S G+G+V F++
Sbjct: 696 GNEGRQIDMANLYVCHLPLYITTEKLIEIFLPCGQITQARVVTDRYTGISKGFGFVRFAD 755
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPS 105
AA AL +N PL G + V + PS
Sbjct: 756 TYSAAVALTHMNGYPLEGHILEVRIAGVHPS 786
>gi|432092097|gb|ELK24806.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 179
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 80/115 (69%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYV DL +VTD+ LY+ F+ V+S+ VC + SLGY Y+NF +
Sbjct: 5 ASSYPMASLYVADLHWDVTDAMLYEQFSPARPVLSIWVCHNKIISHSLGYAYINFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
A RAL+ +NF + GKPI +M+S RDPS+RKS GNIFIK LDK+ID+KAL+DTF
Sbjct: 65 AERALDTMNFDVIKGKPIHIMWSQRDPSVRKSAVGNIFIKKLDKSIDNKALYDTF 119
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFS 354
M AA + A+LY+ +L + D L + FSP + S V + S G ++ F
Sbjct: 1 MNTAASSYPMASLYVADLHWDVTDAMLYEQFSPARPVLSIWVCHNKIISHSLGYAYINFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+++ +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIHIMWSQRDPSVR 94
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS +LS V + + S GY ++ F A++A++
Sbjct: 11 ASLYVADLHWDVTDAMLYEQFSPARPVLSIWVCHNKIISHSLGYAYINFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
+N ++ K +++ +RD + KS N+++K L +S + L +F
Sbjct: 71 TMNFDVIKGKPIHIMW----SQRDPSVRKSAVGNIFIKKLDKSIDNKALYDTF 119
>gi|62897393|dbj|BAD96637.1| PABPC4 protein variant [Homo sapiens]
Length = 371
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 78/90 (86%), Gaps = 1/90 (1%)
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361
++QG NLYIKNLDD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++
Sbjct: 1 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATK 59
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
A+ EMNG++V SKPLYVALAQRKE+R+A L
Sbjct: 60 AVTEMNGRIVGSKPLYVALAQRKEERKAHL 89
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK FGFV F + ++A +AV +
Sbjct: 6 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 64
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 65 NGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 97
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 63/99 (63%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD ID + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++
Sbjct: 6 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 64
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER K+ TN Y++ ++
Sbjct: 65 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 98
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LY+ +L+ + D +L F+ G + S +V L RS G+G+V FS+ +EA +A+ +
Sbjct: 7 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 64
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD--KAIDHKALHDTF 132
N + KP+ V + R RK+ N +++ + +A+ A+ + F
Sbjct: 65 NGRIVGSKPLYVALAQRK-EERKAHLTNQYMQRVAGMRALPANAILNQF 112
>gi|366988141|ref|XP_003673837.1| hypothetical protein NCAS_0A08980 [Naumovozyma castellii CBS 4309]
gi|342299700|emb|CCC67456.1| hypothetical protein NCAS_0A08980 [Naumovozyma castellii CBS 4309]
Length = 605
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 180/401 (44%), Gaps = 64/401 (15%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
TSL++ L +VT++ LYD+F++ +VS+++C D +++SL YGY+NFS+ EA +A+
Sbjct: 91 VTSLFINGLADDVTENMLYDVFSKYQSLVSLKICCDSDSKKSLNYGYLNFSDELEAKKAV 150
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNIL 139
+ N+T L G I++M S R+ RK+ N+F NL +K + +A +DTF +G IL
Sbjct: 151 DDFNYTILFGNEIKMMPSLRNTIYRKNIGTNVFFANLPLENKHLTTRAFYDTFKGYGEIL 210
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD----- 194
SCK+ + K GFV FDN++ AQ I N + ++ G K+ R+
Sbjct: 211 SCKL-----DKRKNIGFVYFDNDKPAQMVINDFNNKIYFGNKIICGLHFDKEIRNFPNFD 265
Query: 195 ----------------------------TEINKSKFTNVYVKNLSESTTEEDLQKSFGEY 226
+E+ ++VKNL +E++ F +
Sbjct: 266 KRKANIDNKIIIDDELEAANIGVQFKKNSELILPHPNAIFVKNLPFDVPDEEILDHFSKL 325
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G + S KS + F+ ++ D RA N KF K V +A+ K+
Sbjct: 326 GPVKSVFSSNVTKYKSS-WAFITYKKQTDTIRATNHFNNTKFQGKTITVSRAKLKNTE-- 382
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
+Y+ N+ + E L++L G I + K+ P
Sbjct: 383 -----------------GNRTVYLNNVSVVCNQEFLRRLCLQEG-IKAQKIYLKPDDHDS 424
Query: 347 --GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385
SG++ ++ + A R +NGK + ++V+ + K+
Sbjct: 425 YSCSGYIKCNSKDNAKRVFEILNGKFIGGCYIHVSWDKIKD 465
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 123/303 (40%), Gaps = 35/303 (11%)
Query: 107 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG-QSKGYGFVQFDNEESA 165
RK ++FI L + L+D FS + +++S K+ D + +S YG++ F +E A
Sbjct: 87 RKRIVTSLFINGLADDVTENMLYDVFSKYQSLVSLKICCDSDSKKSLNYGYLNFSDELEA 146
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNL---SESTTEEDLQKS 222
+KA++ N +L ++ + L R+T K+ TNV+ NL ++ T +
Sbjct: 147 KKAVDDFNYTILFGNEIKMMPSL----RNTIYRKNIGTNVFFANLPLENKHLTTRAFYDT 202
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F YG I S + K K GFV F+N A + N K + + G K
Sbjct: 203 FKGYGEILSCKL-----DKRKNIGFVYFDNDKPAQMVINDFNNKIYFGNKIICGLHFDKE 257
Query: 283 ERELELKHQFEQNMKEAA---DKFQGAN------------------LYIKNLDDSIDDEK 321
R + + N+ D+ + AN +++KNL + DE+
Sbjct: 258 IRNFPNFDKRKANIDNKIIIDDELEAANIGVQFKKNSELILPHPNAIFVKNLPFDVPDEE 317
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
+ FS G + S + + F+ + + RA N K + V+ A
Sbjct: 318 ILDHFSKLGPVKSV-FSSNVTKYKSSWAFITYKKQTDTIRATNHFNNTKFQGKTITVSRA 376
Query: 382 QRK 384
+ K
Sbjct: 377 KLK 379
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFV 248
+ R+ K T++++ L++ TE L F +Y ++ S + D D K S +G++
Sbjct: 79 RDSRNYRSRKRIVTSLFINGLADDVTENMLYDVFSKYQSLVSLKICCDSDSKKSLNYGYL 138
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
NF + +A +AV+ N E + + + + + +N+ G N+
Sbjct: 139 NFSDELEAKKAVDDFNYTILFGNEIKMMPSLRNT--------IYRKNI--------GTNV 182
Query: 309 YIKNL---DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
+ NL + + F +G I SCK+ + + GFV F + A + +
Sbjct: 183 FFANLPLENKHLTTRAFYDTFKGYGEILSCKLDK-----RKNIGFVYFDNDKPAQMVIND 237
Query: 366 MNGKMVVSKPLYVALAQRKEDR 387
N K+ + L KE R
Sbjct: 238 FNNKIYFGNKIICGLHFDKEIR 259
>gi|145491019|ref|XP_001431509.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145522722|ref|XP_001447205.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398614|emb|CAK64111.1| unnamed protein product [Paramecium tetraurelia]
gi|124414705|emb|CAK79808.1| unnamed protein product [Paramecium tetraurelia]
Length = 260
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++Y+G+L+ VTD +++LF Q G VV+V + +D + GYG+V F + ++A A+++
Sbjct: 20 TIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDADYAIKI 79
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
++ L GKPI+V + +D ++ GA N+FI NLD ID K L++TFSAFG+ILS K+
Sbjct: 80 MHMIKLYGKPIKVNKASQDKRTQEVGA-NLFIGNLDTEIDEKTLYETFSAFGHILSTKIM 138
Query: 145 TDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+ G SKGYGFV +DN ES+ A+ +NG L K + V + +K +
Sbjct: 139 RNPETGVSKGYGFVSYDNFESSDGALTAMNGQFLGTKIIRVEYAFKKDAK 188
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 104/190 (54%), Gaps = 21/190 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
+Y+ NL + T++ + + F + G + + + +D G+ + +GFV F++ +DA A++
Sbjct: 20 TIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDADYAIKI 79
Query: 263 LNGKKFDDKEWYVGKA-QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
++ K K V KA Q K +E+ GANL+I NLD ID++
Sbjct: 80 MHMIKLYGKPIKVNKASQDKRTQEV------------------GANLFIGNLDTEIDEKT 121
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L + FS FG I S K+MR+P +G+S+G GFV++ E + AL MNG+ + +K + V
Sbjct: 122 LYETFSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSDGALTAMNGQFLGTKIIRVEY 181
Query: 381 AQRKEDRRAR 390
A +K+ + R
Sbjct: 182 AFKKDAKGER 191
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 98/183 (53%), Gaps = 7/183 (3%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P ++ I+I NLD+ + + + F G +++ + D ++G+ +GYGFV+F +E
Sbjct: 11 PLYERNQEATIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSE 70
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
E A AI+ ++ + L K + V + +R E+ N+++ NL E+ L ++
Sbjct: 71 EDADYAIKIMHMIKLYGKPIKVNK-ASQDKRTQEVG----ANLFIGNLDTEIDEKTLYET 125
Query: 223 FGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
F +G I S +MR+ + G SK +GFV+++N + + A+ A+NG+ K V A KK
Sbjct: 126 FSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSDGALTAMNGQFLGTKIIRVEYAFKK 185
Query: 282 SER 284
+
Sbjct: 186 DAK 188
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
Q A +YI NLD + D+ + +LF G + + + +D SG +G GFV F + E+A A
Sbjct: 17 QEATIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDADYA 76
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRAR 390
+ M+ + KP+ V A +D+R +
Sbjct: 77 IKIMHMIKLYGKPIKVNKAS--QDKRTQ 102
>gi|145347251|ref|XP_001418087.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578315|gb|ABO96380.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 319
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 118/201 (58%), Gaps = 11/201 (5%)
Query: 1 MAQVQAQGQNVNGGGAN------ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVR 54
MA + A G+ G G N A++ ++YVG+L+ VT+ L++LF Q G V +V
Sbjct: 1 MAPI-AGGRITAGAGVNLLGQHGADRNAEATVYVGNLDPQVTEEVLWELFLQAGPVTNVY 59
Query: 55 VCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNI 114
V +D T GYG+V F N ++A +++LN L GKPI+V S D R N+
Sbjct: 60 VPKDRVTSTHQGYGFVEFRNEEDAEYGIKILNMVKLFGKPIKVNKSVGD--RRDEVGANL 117
Query: 115 FIKNLDKAIDHKALHDTFSAFGNIL-SCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKL 172
FI NLD ID K L+DTFSAFG ++ + K+ D NG SKG+GFV +D+ E++ AIE +
Sbjct: 118 FIGNLDPDIDEKLLYDTFSAFGVVINTPKIMRDPDNGASKGFGFVAYDSFEASDAAIEAM 177
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
NG L +KQ+ V + +K +
Sbjct: 178 NGQFLCNKQINVQYAYKKDSK 198
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 21/189 (11%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
VYV NL TEE L + F + G +T+ V +D + +GFV F N +DA ++ L
Sbjct: 31 VYVGNLDPQVTEEVLWELFLQAGPVTNVYVPKDRVTSTHQGYGFVEFRNEEDAEYGIKIL 90
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K K V K+ E+ GANL+I NLD ID++ L
Sbjct: 91 NMVKLFGKPIKVNKSVGDRRDEV------------------GANLFIGNLDPDIDEKLLY 132
Query: 324 QLFSPFGS-ITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
FS FG I + K+MRDP +G S+G GFVA+ + E + A+ MNG+ + +K + V A
Sbjct: 133 DTFSAFGVVINTPKIMRDPDNGASKGFGFVAYDSFEASDAAIEAMNGQFLCNKQINVQYA 192
Query: 382 QRKEDRRAR 390
+K+ + R
Sbjct: 193 YKKDSKGER 201
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 9/192 (4%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ NLD + + L + F G + + V D + +GYGFV+F NEE A+ I+ L
Sbjct: 31 VYVGNLDPQVTEEVLWELFLQAGPVTNVYVPKDRVTSTHQGYGFVEFRNEEDAEYGIKIL 90
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT-ITS 231
N + L K + V + +R E+ N+++ NL E+ L +F +G I +
Sbjct: 91 NMVKLFGKPIKVNKSV--GDRRDEVG----ANLFIGNLDPDIDEKLLYDTFSAFGVVINT 144
Query: 232 AVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
+MRD D G SK FGFV +++ + + A+EA+NG+ +K+ V A KK +
Sbjct: 145 PKIMRDPDNGASKGFGFVAYDSFEASDAAIEAMNGQFLCNKQINVQYAYKKDSKGERHGS 204
Query: 291 QFEQNMKEAADK 302
Q E+ + ++ ++
Sbjct: 205 QAERLLAQSIER 216
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ AD+ A +Y+ NLD + +E L +LF G +T+ V +D + +G GFV F
Sbjct: 20 QHGADRNAEATVYVGNLDPQVTEEVLWELFLQAGPVTNVYVPKDRVTSTHQGYGFVEFRN 79
Query: 356 PEEASRALLEMNGKMVVSKPLYV--ALAQRKEDRRARL 391
E+A + +N + KP+ V ++ R+++ A L
Sbjct: 80 EEDAEYGIKILNMVKLFGKPIKVNKSVGDRRDEVGANL 117
>gi|355709046|gb|AES03463.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 102
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 82/102 (80%), Gaps = 1/102 (0%)
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L++ FSPFG+IT
Sbjct: 2 YVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 61
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
S KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP
Sbjct: 62 SAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 102
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 15/98 (15%)
Query: 182 VYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGT 228
+YVG +K ER TE+ K KF N+YVKNL + +E L+K F +GT
Sbjct: 1 IYVGRAQKKVERQTEL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 59
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK 266
ITSA VM +G G+SK FGFV F + ++A +AV +NG+
Sbjct: 60 ITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGR 96
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KNLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++
Sbjct: 35 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEM 93
Query: 173 NGMLLNDK 180
NG ++ K
Sbjct: 94 NGRIVATK 101
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+LYV +L+ + D +L F+ G + S +V + RS G+G+V FS+ +EA +A+
Sbjct: 34 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVT 91
Query: 84 MLNFTPLNGKP 94
+N + KP
Sbjct: 92 EMNGRIVATKP 102
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 77/90 (85%), Gaps = 1/90 (1%)
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361
++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++
Sbjct: 7 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATK 65
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
A+ EMNG++V +KPLYVALAQRKE+R+A L
Sbjct: 66 AVTEMNGRIVATKPLYVALAQRKEERQAHL 95
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
KQ+R I + + N+YVKNL + +E L+K F +GTITSA VM +G G+SK FGFV
Sbjct: 1 KQDR---ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVC 56
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 57 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 103
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KNLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++
Sbjct: 12 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEM 70
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER ++ TN Y++ ++
Sbjct: 71 NGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 104
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYV +L+ + D +L F+ G + S +V + RS G+G+V FS+ +EA +A+ +
Sbjct: 13 LYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEM 70
Query: 86 NFTPLNGKPIRVMYSHR 102
N + KP+ V + R
Sbjct: 71 NGRIVATKPLYVALAQR 87
>gi|50302861|ref|XP_451368.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640499|emb|CAH02956.1| KLLA0A08338p [Kluyveromyces lactis]
Length = 766
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 176/370 (47%), Gaps = 55/370 (14%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L++GDL NVT+ L+++FN+ SV++C D +T++SLGYGY+NF + ++A A++
Sbjct: 138 TALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVD 197
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILS 140
N+ P+ G+ IR+M S R+ RK+ N+F NL + + + +D F FG ILS
Sbjct: 198 EYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILS 257
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HFLRKQERDTE--- 196
CK+ + K GF+ F+N+ +A++AI++ NG D + G HF R + E
Sbjct: 258 CKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPEFEQ 312
Query: 197 -INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
IN+ + NL+ + + M D + V + S++
Sbjct: 313 KINR-------INNLT----------------VVKEKLEMEDDNN-------VTTDPSEN 342
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD-KFQGAN-LYIKNL 313
+ V A N DD + VG A K E+ KE+ + K N +++KNL
Sbjct: 343 GKKDVVAGNDTDDDDDDKAVGNATKS---------LVEETNKESKNTKLPHPNAIFVKNL 393
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
+ + L FS G + S D S F+ + ++ A+ ++NG +
Sbjct: 394 PINPSHDNLLNFFSKIGPVKSV-YTSDVSKFDSSWAFITYKRIQDTKTAIEKLNGCKYMK 452
Query: 374 KPLYVALAQR 383
+ + V +R
Sbjct: 453 RTIEVKKTER 462
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 9/186 (4%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
IF+KNL H L + FS G + S +D++ + F+ + + + AIEKLN
Sbjct: 388 IFVKNLPINPSHDNLLNFFSKIGPVKSV-YTSDVSKFDSSWAFITYKRIQDTKTAIEKLN 446
Query: 174 GMLLNDKQVYVG----HFLRKQ--ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG 227
G + + V H L + E +T N K T V++ NLS EE L G+
Sbjct: 447 GCKYMKRTIEVKKTERHHLEESQFENNTRPNNYKKT-VFLTNLSVICNEEFLNFLCGQER 505
Query: 228 TITSAVVMRDGDGKSKCF-GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
T VV+R + K+ + G+V + +DA R E + K D E Q K + +
Sbjct: 506 IKTERVVVRYYEEKTDTYSGYVRCASRNDAQRLFELMENKLLGDSEVKASWQQPKDVKLI 565
Query: 287 ELKHQF 292
E++ +
Sbjct: 566 EVEPSY 571
>gi|384247365|gb|EIE20852.1| hypothetical protein COCSUDRAFT_4708, partial [Coccomyxa
subellipsoidea C-169]
Length = 264
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 131/256 (51%), Gaps = 14/256 (5%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L V ++ L D+F+ +G V VR+ +D +T S G +V F + Q AA AL+
Sbjct: 6 ALYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKT 65
Query: 85 LNFTPLNGKPIRVMYS-HRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+N L K +R+ ++ ++ + + +IF+ NL + L F G +V
Sbjct: 66 INGRILYNKEVRIQWAFQKEKTENTASHSHIFVGNLSGDVADPVLLQAFQHLGECSDARV 125
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
D + G+SKG+GFV F +E+A+KA+ +++G + ++ G K E T ++
Sbjct: 126 MWDHSTGRSKGFGFVSFRTKEAAEKALAEMDGAQVGQWKIRCGWAHHKTEAVTGLDIDTV 185
Query: 203 -------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
TNVYV NL EEDL+ +FG YG IT G +GFV + +
Sbjct: 186 DRADPANTNVYVGNLPTEVMEEDLRAAFGAYGEITGLKPCHKGG-----YGFVTYRDHSA 240
Query: 256 AARAVEALNGKKFDDK 271
A +A+ +NGK+ K
Sbjct: 241 AVQAIVGMNGKELKGK 256
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 129/258 (50%), Gaps = 15/258 (5%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ NL ++ L D FS G + ++ D G S G FV+F++ ++A A++ +
Sbjct: 7 LYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKTI 66
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
NG +L +K+V + +K++ + N + ++++V NLS + L ++F G + A
Sbjct: 67 NGRILYNKEVRIQWAFQKEKTE---NTASHSHIFVGNLSGDVADPVLLQAFQHLGECSDA 123
Query: 233 VVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
VM D G+SK FGFV+F + A +A+ ++G + + G A K+E L
Sbjct: 124 RVMWDHSTGRSKGFGFVSFRTKEAAEKALAEMDGAQVGQWKIRCGWAHHKTEAVTGL--- 180
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
+ + + AD N+Y+ NL + +E L+ F +G IT K G GFV
Sbjct: 181 -DIDTVDRADP-ANTNVYVGNLPTEVMEEDLRAAFGAYGEITGLKPCHKG-----GYGFV 233
Query: 352 AFSTPEEASRALLEMNGK 369
+ A +A++ MNGK
Sbjct: 234 TYRDHSAAVQAIVGMNGK 251
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
+YV NL E LQ F GT++ +++D G S FV FE+ AA A++ +
Sbjct: 7 LYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKTI 66
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NG+ +KE + A +K + E H +++++ NL + D L
Sbjct: 67 NGRILYNKEVRIQWAFQKEKTENTASH---------------SHIFVGNLSGDVADPVLL 111
Query: 324 QLFSPFGSITSCKVMRDPS-GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
Q F G + +VM D S G S+G GFV+F T E A +AL EM+G V + A
Sbjct: 112 QAFQHLGECSDARVMWDHSTGRSKGFGFVSFRTKEAAEKALAEMDGAQVGQWKIRCGWAH 171
Query: 383 RKEDRRARLQV 393
K + L +
Sbjct: 172 HKTEAVTGLDI 182
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N + ++VG+L +V D L F +G+ RV D ST RS G+G+V+F + A
Sbjct: 89 NTASHSHIFVGNLSGDVADPVLLQAFQHLGECSDARVMWDHSTGRSKGFGFVSFRTKEAA 148
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR----------DPSLRKSGAG-NIFIKNLDKAIDHKA 127
+AL ++ + IR ++H D R A N+++ NL + +
Sbjct: 149 EKALAEMDGAQVGQWKIRCGWAHHKTEAVTGLDIDTVDRADPANTNVYVGNLPTEVMEED 208
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
L F A+G I K GYGFV + + +A +AI +NG L K V
Sbjct: 209 LRAAFGAYGEITGLKPC-----HKGGYGFVTYRDHSAAVQAIVGMNGKELKGKMV 258
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YVG+L V + L F G++ ++ C GYG+V + + A +A+
Sbjct: 193 TNVYVGNLPTEVMEEDLRAAFGAYGEITGLKPCH------KGGYGFVTYRDHSAAVQAIV 246
Query: 84 MLNFTPLNGKPIRVMY 99
+N L GK ++ +
Sbjct: 247 GMNGKELKGKMVKCSW 262
>gi|384248056|gb|EIE21541.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 537
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 110/185 (59%), Gaps = 15/185 (8%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
+V+V LS + E L++ FG G + SAVVMRD G S+ FGFVNF +D+A RA++
Sbjct: 25 SVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRDHFGASRGFGFVNFTKADEADRAIQQF 84
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG---ANLYIKNLDDSIDDE 320
N W V KA+K+ EQ + ++ QG NL+I+ ++ I
Sbjct: 85 NKIPHCAGTWLVRKAEKRKP---------EQKAGQVSE--QGLDLCNLFIRGVEPEISSI 133
Query: 321 KLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+L+ +F FG + S K++ DP +G S+ +GF+ F+ PEEA+RA+ EMNGK V SK L+V
Sbjct: 134 RLQSMFEAFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNGKQVGSKRLFVT 193
Query: 380 LAQRK 384
LAQ++
Sbjct: 194 LAQKR 198
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%)
Query: 9 QNVNGGGANANQ-----FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR 63
Q NGGG A + + S++V L V+ L ++F ++G+V S V RD
Sbjct: 4 QGTNGGGPGAQEAVNPATESCSVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRD-HFGA 62
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGA--------GNIF 115
S G+G+VNF+ A EA RA++ N P V + + +K+G N+F
Sbjct: 63 SRGFGFVNFTKADEADRAIQQFNKIPHCAGTWLVRKAEKRKPEQKAGQVSEQGLDLCNLF 122
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNG 174
I+ ++ I L F AFG ++S K+ D G SK GF++F E A +AI ++NG
Sbjct: 123 IRGVEPEISSIRLQSMFEAFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNG 182
Query: 175 MLLNDKQVYV 184
+ K+++V
Sbjct: 183 KQVGSKRLFV 192
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 15/194 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
++F+ L + + L + F G + S V D G S+G+GFV F + A +AI++
Sbjct: 25 SVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRDHFGASRGFGFVNFTKADEADRAIQQF 84
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKS--------KFTNVYVKNLSESTTEEDLQKSFG 224
N + +RK E+ K+ N++++ + + LQ F
Sbjct: 85 NKI----PHCAGTWLVRKAEKRKPEQKAGQVSEQGLDLCNLFIRGVEPEISSIRLQSMFE 140
Query: 225 EYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G + S+ ++ D G SKC GF+ F ++AARA+ +NGK+ K +V AQK++
Sbjct: 141 AFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNGKQVGSKRLFVTLAQKRAT 200
Query: 284 RELE--LKHQFEQN 295
+ + + FEQ+
Sbjct: 201 TDPQGIIHPPFEQS 214
>gi|328767802|gb|EGF77850.1| hypothetical protein BATDEDRAFT_33617 [Batrachochytrium
dendrobatidis JAM81]
Length = 308
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S+YVG++E TDS +++LF Q G VV+V + +D T+ GYG+V F Q+A A ++
Sbjct: 12 SVYVGNIEDRATDSLIWELFLQAGPVVNVYLPKDRVTQMHQGYGFVEFMTEQDAEYASKV 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
+N L GKP+RV + D GA +FI NLD +D KAL+DTFSAFG I S K+
Sbjct: 72 MNMVRLYGKPLRVNKATSDKMALDVGA-TLFISNLDMTVDEKALYDTFSAFGMIASTPKI 130
Query: 144 ATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
+ + G+SKGYGFV F E++ AIE +NG L ++ + V + L+K
Sbjct: 131 SRNPETGESKGYGFVSFSTFEASDAAIEAMNGQFLANRAIAVSYALKK 178
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 26/205 (12%)
Query: 189 RKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGF 247
R+++R+ E +VYV N+ + T+ + + F + G + + + +D + + +GF
Sbjct: 3 RQEDRNKE------ASVYVGNIEDRATDSLIWELFLQAGPVVNVYLPKDRVTQMHQGYGF 56
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
V F DA A + +N + K V KA K A D GA
Sbjct: 57 VEFMTEQDAEYASKVMNMVRLYGKPLRVNKATSD---------------KMALDV--GAT 99
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSC-KVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
L+I NLD ++D++ L FS FG I S K+ R+P +G S+G GFV+FST E + A+
Sbjct: 100 LFISNLDMTVDEKALYDTFSAFGMIASTPKISRNPETGESKGYGFVSFSTFEASDAAIEA 159
Query: 366 MNGKMVVSKPLYVALAQRKEDRRAR 390
MNG+ + ++ + V+ A +K+ + R
Sbjct: 160 MNGQFLANRAIAVSYALKKDGKGER 184
>gi|123407360|ref|XP_001302992.1| embryonic poly [Trichomonas vaginalis G3]
gi|121884333|gb|EAX90062.1| embryonic poly, putative [Trichomonas vaginalis G3]
Length = 426
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 129/239 (53%), Gaps = 16/239 (6%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGDL +V ++ + ++F G S V + +V F + + A RA+ +
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 86 NFTPLNGKPIRVMYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N+T L+G PIR+++S DP + K+ G +FI+ LD+ I+ LHD FS FG I+SCK
Sbjct: 68 NYTKLDGVPIRILWS--DPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSCK 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ NG+S+GYGF+ F E+ A++A L +N K + + + + ++ E F
Sbjct: 126 IPL-TNGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEFYQKPTRKNPE---ETF 181
Query: 203 TNVYVKNLSEST--TEEDLQKSFGEYGTIT-----SAVVMRDGDGKSKCFGFVNFENSD 254
TNV++K L T++DL F E+G + + R DG S FGF++F++ +
Sbjct: 182 TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSSCEFGFLHFKHHE 240
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 17/183 (9%)
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITS-AVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+ V+V +L S E +++ F +YG+ S V ++ K F FV FE+ + A RA+
Sbjct: 5 WKEVFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAI 64
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+N K D + + ++R ++ N+ GA L+I+ LD++I+
Sbjct: 65 SEVNYTKLDGVPIRILWSDPGTKRAIK------NNV--------GA-LFIRGLDENIEVS 109
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L FS FG I SCK+ +G SRG GF+ F ++A RA ++ + KP+ +
Sbjct: 110 QLHDAFSNFGEIVSCKIPLT-NGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEF 168
Query: 381 AQR 383
Q+
Sbjct: 169 YQK 171
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 12/148 (8%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L++ L+ N+ SQL+D F+ G++VS ++ L+ +S GYG++ F +A RA
Sbjct: 96 ALFIRGLDENIEVSQLHDAFSNFGEIVSCKI--PLTNGKSRGYGFITFYKEDDAKRAKTD 153
Query: 85 LNFTPLNGKPIRVMYSHRDPSLR--KSGAGNIFIKNLDKAI--DHKALHDTFSAFGNILS 140
L +NGKPI++ + ++ P+ + + N+FIK L I L + F FG+ +
Sbjct: 154 LADASINGKPIQIEF-YQKPTRKNPEETFTNVFIKPLPADIFKTDDDLANFFKEFGDFVV 212
Query: 141 CKVATDL-----NGQSKGYGFVQFDNEE 163
A +G S +GF+ F + E
Sbjct: 213 TGKANPAIKRKEDGSSCEFGFLHFKHHE 240
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 108/259 (41%), Gaps = 32/259 (12%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDN 161
DP+ ++ +F+ +L ++D + + F +G+ S V + K + FV F++
Sbjct: 2 DPNWKE-----VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFES 56
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
E A++AI ++N L+ + + L K+ ++++ L E+ L
Sbjct: 57 HELAKRAISEVNYTKLDGVPIRI---LWSDPGTKRAIKNNVGALFIRGLDENIEVSQLHD 113
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S + +GKS+ +GF+ F DDA RA L + K + QK
Sbjct: 114 AFSNFGEIVSCKIPLT-NGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEFYQKP 172
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI--DDEKLKQLFSPFGSIT-----S 334
+ + E + F N++IK L I D+ L F FG +
Sbjct: 173 TRKNPE-------------ETF--TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKAN 217
Query: 335 CKVMRDPSGISRGSGFVAF 353
+ R G S GF+ F
Sbjct: 218 PAIKRKEDGSSCEFGFLHF 236
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 150 QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
+SKG+GFV F +ESAQ A+E LN K Y+G F K+ER+ E
Sbjct: 283 ESKGFGFVLFKTKESAQNALENAVITPLNGKTPYIGLFKMKEERERE 329
>gi|224094731|ref|XP_002310211.1| predicted protein [Populus trichocarpa]
gi|222853114|gb|EEE90661.1| predicted protein [Populus trichocarpa]
Length = 184
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 108/171 (63%), Gaps = 3/171 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+ YVG+L+ V++ L++LF Q G VV+V V +D T GYG+V F + ++A A+++
Sbjct: 7 TAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKV 66
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKV 143
LN L GKPIRV + +D GA N+FI NLD +D K LHDTFSAFG I++ K+
Sbjct: 67 LNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLHDTFSAFGVIVTNPKI 125
Query: 144 ATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D G S+G+GF+ +D+ E++ AIE +NG L ++Q+ V + +K +
Sbjct: 126 MRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 176
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL +EE L + F + G + + V +D + +GFV F + +DA A++ LN
Sbjct: 9 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 68
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL+I NLD +D++ L
Sbjct: 69 MIKLYGKPIRVNKASQ-DKKSLDV----------------GANLFIGNLDPDVDEKLLHD 111
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GF+++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 112 TFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 171
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 172 KKDTKGER 179
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRA 362
Q A Y+ NLD + +E L +LF G + + V +D + + +G GFV F + E+A A
Sbjct: 4 QDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYA 63
Query: 363 LLEMNGKMVVSKPLYV 378
+ +N + KP+ V
Sbjct: 64 IKVLNMIKLYGKPIRV 79
>gi|134026264|gb|AAI36135.1| ELAV (embryonic lethal, abnormal vision)-like 3 (Hu antigen C)
[Xenopus (Silurana) tropicalis]
Length = 342
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 143/296 (48%), Gaps = 50/296 (16%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + +A +A+
Sbjct: 35 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 94
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ +L K ++ K + FS +G I++ ++
Sbjct: 95 TLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRI 152
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG-------------------------MLL 177
D + G S+G GF++FD A++AI+ LNG +L
Sbjct: 153 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQALLT 212
Query: 178 NDKQV----YVG--HFLRKQERDTEINKSKFTN---------------VYVKNLSESTTE 216
+ Q Y G H ++ R + I TN ++V NLS E
Sbjct: 213 HLYQTTARRYTGPLHHQTQRFRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSPEADE 272
Query: 217 EDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK 271
L + FG +G +T+ V+RD K K FGFV N D+AA A+ +LNG + D+
Sbjct: 273 SVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 328
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 148/312 (47%), Gaps = 43/312 (13%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + A KAI
Sbjct: 36 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 95
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV +L ++ ++++++ F +YG IT
Sbjct: 96 LNGLKLQTKTIKVSY---ARPSSASIRDA---NLYVSSLPKTMNQKEMEQLFSQYGRIIT 149
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK------------FDDKEWYVGKA 278
S +++ G S+ GF+ F+ +A A++ LNG+K ++ G+A
Sbjct: 150 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQA 209
Query: 279 ------QKKSEREL-ELKHQ-----FEQNMKEAADKFQGANL----------YIKNLDDS 316
Q + R L HQ F ++ G +L ++ NL
Sbjct: 210 LLTHLYQTTARRYTGPLHHQTQRFRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSPE 269
Query: 317 IDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
D+ L QLF PFG++T+ KV+RD + +G GFV + +EA+ A+ +NG + +
Sbjct: 270 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 329
Query: 376 LYVALAQRKEDR 387
L V+ K+ +
Sbjct: 330 LQVSFKTSKQHK 341
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 22/183 (12%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + +DA +A+
Sbjct: 35 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 94
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG K K V A+ S + ANLY+ +L +++ ++
Sbjct: 95 TLNGLKLQTKTIKVSYARPSSA------------------SIRDANLYVSSLPKTMNQKE 136
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGK--MVVSKPLYV 378
++QLFS +G I + +++ D +G+SRG GF+ F EA A+ +NG+ + S+P+ V
Sbjct: 137 MEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITV 196
Query: 379 ALA 381
A
Sbjct: 197 KFA 199
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 261 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 320
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 321 NGYRLGDRVLQVSF 334
>gi|356532261|ref|XP_003534692.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 365
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 133/242 (54%), Gaps = 11/242 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+ YVG+L+ +++ L++LF Q G VV+V V +D T + GYG+V F + ++A A+++
Sbjct: 26 TAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKV 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKV 143
LN L GKPIRV + +D GA N+FI NLD +D K L+DTFSAFG I++ K+
Sbjct: 86 LNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
D + G S+G+GF+ +D+ E++ AIE +NG L ++Q+ V + +K DT+ +
Sbjct: 145 MRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK---DTKGERHGT 201
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTIT-SAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
V S TT++ + G T +V +G F N A A+
Sbjct: 202 PAERVLAASNPTTQKSRPHTLFASGPPTLPSVPQANGVAPVPPRPFAN----GVAPPAIP 257
Query: 262 AL 263
AL
Sbjct: 258 AL 259
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 102/188 (54%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL +EE L + F + G + + V +D + + +GFV F + +DA A++ LN
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL+I NLD +D++ L
Sbjct: 88 MIKLYGKPIRVNKA-SQDKKSLDV----------------GANLFIGNLDPDVDEKLLYD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GF+++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ AA++ Q A Y+ NLD I +E L +LF G + + V +D + +G GFV F +
Sbjct: 16 QHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ +N + KP+ V
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRV 98
>gi|401409932|ref|XP_003884414.1| putative splicing factor [Neospora caninum Liverpool]
gi|325118832|emb|CBZ54384.1| putative splicing factor [Neospora caninum Liverpool]
Length = 550
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 111/186 (59%), Gaps = 6/186 (3%)
Query: 13 GGGANANQF----GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYG 68
GGGA+ Q +LY+G+L++ V D L++LF Q G V +V V RD T GYG
Sbjct: 14 GGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYG 73
Query: 69 YVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKAL 128
+V F+N +A AL+++N L GK +R+ S +D GA NIF+ NLD +D K +
Sbjct: 74 FVEFTNEVDADYALKLMNMVKLYGKSLRLNKSAQDRRNFDVGA-NIFLGNLDPDVDEKTI 132
Query: 129 HDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
+DTFS FGNIL+ K+ D G S+G+GFV FD E++ A+ +NG + ++ ++V +
Sbjct: 133 YDTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Query: 188 LRKQER 193
+K R
Sbjct: 193 YKKDTR 198
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 102/188 (54%), Gaps = 19/188 (10%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+Y+ NL ++ L + F + G + + V RD G + +GFV F N DA A++ +
Sbjct: 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFTNEVDADYALKLM 90
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K K + K+ + R ++ GAN+++ NLD +D++ +
Sbjct: 91 NMVKLYGKSLRLNKS-AQDRRNFDV----------------GANIFLGNLDPDVDEKTIY 133
Query: 324 QLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG+I + K+MRDP +GISRG GFV+F T E + AL MNG+ + ++P++V+ A
Sbjct: 134 DTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAY 193
Query: 383 RKEDRRAR 390
+K+ R R
Sbjct: 194 KKDTRGER 201
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAF 353
++ + ++ Q A LYI NLD +DD+ L +LF G + + V RD +G +G GFV F
Sbjct: 18 DITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEF 77
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+ +A AL MN + K L L + +DRR
Sbjct: 78 TNEVDADYALKLMNMVKLYGKSLR--LNKSAQDRR 110
>gi|213623456|gb|AAI69769.1| ElrC protein [Xenopus laevis]
Length = 341
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 143/296 (48%), Gaps = 50/296 (16%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + +A +A+
Sbjct: 34 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 93
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ +L K ++ K + FS +G I++ ++
Sbjct: 94 TLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRI 151
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG-------------------------MLL 177
D + G S+G GF++FD A++AI+ LNG +L
Sbjct: 152 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQALLT 211
Query: 178 NDKQV----YVG--HFLRKQERDTEINKSKFTN---------------VYVKNLSESTTE 216
+ Q Y G H ++ R + I TN ++V NLS E
Sbjct: 212 HLYQTTARRYTGPLHHQTQRFRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSPEADE 271
Query: 217 EDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK 271
L + FG +G +T+ V+RD K K FGFV N D+AA A+ +LNG + D+
Sbjct: 272 SVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 327
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 148/312 (47%), Gaps = 43/312 (13%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + A KAI
Sbjct: 35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 94
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV +L ++ ++++++ F +YG IT
Sbjct: 95 LNGLKLQTKTIKVSY---ARPSSASIRDA---NLYVSSLPKTMNQKEMEQLFSQYGRIIT 148
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK------------FDDKEWYVGKA 278
S +++ G S+ GF+ F+ +A A++ LNG+K ++ G+A
Sbjct: 149 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQA 208
Query: 279 ------QKKSEREL-ELKHQ-----FEQNMKEAADKFQGANL----------YIKNLDDS 316
Q + R L HQ F ++ G +L ++ NL
Sbjct: 209 LLTHLYQTTARRYTGPLHHQTQRFRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSPE 268
Query: 317 IDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
D+ L QLF PFG++T+ KV+RD + +G GFV + +EA+ A+ +NG + +
Sbjct: 269 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 328
Query: 376 LYVALAQRKEDR 387
L V+ K+ +
Sbjct: 329 LQVSFKTSKQHK 340
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 22/183 (12%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + +DA +A+
Sbjct: 34 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 93
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG K K V A+ S + ANLY+ +L +++ ++
Sbjct: 94 TLNGLKLQTKTIKVSYARPSSA------------------SIRDANLYVSSLPKTMNQKE 135
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGK--MVVSKPLYV 378
++QLFS +G I + +++ D +G+SRG GF+ F EA A+ +NG+ + S+P+ V
Sbjct: 136 MEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITV 195
Query: 379 ALA 381
A
Sbjct: 196 KFA 198
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 260 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 319
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 320 NGYRLGDRVLQVSF 333
>gi|440797982|gb|ELR19056.1| spliceosomal protein, putative [Acanthamoeba castellanii str. Neff]
Length = 316
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 111/174 (63%), Gaps = 3/174 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVG+L++ V+++ L++L Q G VV+V + +D T GYG+V F+ ++A A+++
Sbjct: 12 TVYVGELDSRVSEALLWELMLQSGPVVNVYIPKDKLTNLHQGYGFVEFATEEDAEYAIKI 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
+N L GKP+RV + RD GA N+FI NLD +D K L+DTFSAFG I++ K+
Sbjct: 72 MNMIKLYGKPLRVNKAKRDGKTVDVGA-NLFIGNLDAEVDEKLLYDTFSAFGVIITTPKI 130
Query: 144 ATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
D G+S+G+GFV FD+ ES+ AIE +N L ++ + V + ++K + E
Sbjct: 131 MRDPETGESRGFGFVSFDSFESSDAAIESMNNQYLCNRAITVSYAIKKDSKTGE 184
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 20/187 (10%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
VYV L +E L + + G + + + +D + +GFV F +DA A++
Sbjct: 12 TVYVGELDSRVSEALLWELMLQSGPVVNVYIPKDKLTNLHQGYGFVEFATEEDAEYAIKI 71
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N K K V KA K+ + +++ GANL+I NLD +D++ L
Sbjct: 72 MNMIKLYGKPLRVNKA-KRDGKTVDV----------------GANLFIGNLDAEVDEKLL 114
Query: 323 KQLFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
FS FG I T+ K+MRDP +G SRG GFV+F + E + A+ MN + + ++ + V+
Sbjct: 115 YDTFSAFGVIITTPKIMRDPETGESRGFGFVSFDSFESSDAAIESMNNQYLCNRAITVSY 174
Query: 381 AQRKEDR 387
A +K+ +
Sbjct: 175 AIKKDSK 181
>gi|237833669|ref|XP_002366132.1| splicing factor, putative [Toxoplasma gondii ME49]
gi|211963796|gb|EEA98991.1| splicing factor, putative [Toxoplasma gondii ME49]
Length = 576
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 6/190 (3%)
Query: 9 QNVNGGGANANQF----GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
++ GGGA+ Q +LY+G+L++ V D L++LF Q G V +V V RD T
Sbjct: 10 RSFTGGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNH 69
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
GYG+V F N +A AL+++N L GK +R+ S +D GA N+F+ NLD +D
Sbjct: 70 QGYGFVEFRNEVDADYALKLMNMVKLYGKALRLNKSAQDRRNFDVGA-NVFLGNLDPDVD 128
Query: 125 HKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
K ++DTFSAFGNI+S K+ D G S+G+GFV FD E++ A+ +NG + ++ ++
Sbjct: 129 EKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIH 188
Query: 184 VGHFLRKQER 193
V + +K R
Sbjct: 189 VSYAYKKDTR 198
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 19/189 (10%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
+Y+ NL ++ L + F + G + + V RD G + +GFV F N DA A++
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N K K + K+ + R ++ GAN+++ NLD +D++ +
Sbjct: 90 MNMVKLYGKALRLNKS-AQDRRNFDV----------------GANVFLGNLDPDVDEKTI 132
Query: 323 KQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
FS FG+I S K+MRDP +G+SRG GFV+F T E + AL MNG+ + ++P++V+ A
Sbjct: 133 YDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Query: 382 QRKEDRRAR 390
+K+ R R
Sbjct: 193 YKKDTRGER 201
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAF 353
++ + ++ Q A LYI NLD +DD+ L +LF G + + V RD +G +G GFV F
Sbjct: 18 DITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEF 77
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+A AL MN + K L L + +DRR
Sbjct: 78 RNEVDADYALKLMNMVKLYGKALR--LNKSAQDRR 110
>gi|221508124|gb|EEE33711.1| splicing factor, putative [Toxoplasma gondii VEG]
Length = 576
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 6/190 (3%)
Query: 9 QNVNGGGANANQF----GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
++ GGGA+ Q +LY+G+L++ V D L++LF Q G V +V V RD T
Sbjct: 10 RSFTGGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNH 69
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
GYG+V F N +A AL+++N L GK +R+ S +D GA N+F+ NLD +D
Sbjct: 70 QGYGFVEFRNEVDADYALKLMNMVKLYGKALRLNKSAQDRRNFDVGA-NVFLGNLDPDVD 128
Query: 125 HKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
K ++DTFSAFGNI+S K+ D G S+G+GFV FD E++ A+ +NG + ++ ++
Sbjct: 129 EKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIH 188
Query: 184 VGHFLRKQER 193
V + +K R
Sbjct: 189 VSYAYKKDTR 198
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 19/189 (10%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
+Y+ NL ++ L + F + G + + V RD G + +GFV F N DA A++
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N K K + K+ + R ++ GAN+++ NLD +D++ +
Sbjct: 90 MNMVKLYGKALRLNKS-AQDRRNFDV----------------GANVFLGNLDPDVDEKTI 132
Query: 323 KQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
FS FG+I S K+MRDP +G+SRG GFV+F T E + AL MNG+ + ++P++V+ A
Sbjct: 133 YDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Query: 382 QRKEDRRAR 390
+K+ R R
Sbjct: 193 YKKDTRGER 201
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAF 353
++ + ++ Q A LYI NLD +DD+ L +LF G + + V RD +G +G GFV F
Sbjct: 18 DITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEF 77
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+A AL MN + K L L + +DRR
Sbjct: 78 RNEVDADYALKLMNMVKLYGKALR--LNKSAQDRR 110
>gi|221486340|gb|EEE24601.1| splicing factor, putative [Toxoplasma gondii GT1]
Length = 576
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 6/190 (3%)
Query: 9 QNVNGGGANANQF----GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
++ GGGA+ Q +LY+G+L++ V D L++LF Q G V +V V RD T
Sbjct: 10 RSFTGGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNH 69
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
GYG+V F N +A AL+++N L GK +R+ S +D GA N+F+ NLD +D
Sbjct: 70 QGYGFVEFRNEVDADYALKLMNMVKLYGKALRLNKSAQDRRNFDVGA-NVFLGNLDPDVD 128
Query: 125 HKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
K ++DTFSAFGNI+S K+ D G S+G+GFV FD E++ A+ +NG + ++ ++
Sbjct: 129 EKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIH 188
Query: 184 VGHFLRKQER 193
V + +K R
Sbjct: 189 VSYAYKKDTR 198
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 19/189 (10%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
+Y+ NL ++ L + F + G + + V RD G + +GFV F N DA A++
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N K K + K+ + R ++ GAN+++ NLD +D++ +
Sbjct: 90 MNMVKLYGKALRLNKS-AQDRRNFDV----------------GANVFLGNLDPDVDEKTI 132
Query: 323 KQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
FS FG+I S K+MRDP +G+SRG GFV+F T E + AL MNG+ + ++P++V+ A
Sbjct: 133 YDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Query: 382 QRKEDRRAR 390
+K+ R R
Sbjct: 193 YKKDTRGER 201
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAF 353
++ + ++ Q A LYI NLD +DD+ L +LF G + + V RD +G +G GFV F
Sbjct: 18 DITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEF 77
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+A AL MN + K L L + +DRR
Sbjct: 78 RNEVDADYALKLMNMVKLYGKALR--LNKSAQDRR 110
>gi|225430808|ref|XP_002271291.1| PREDICTED: splicing factor 3B subunit 4 [Vitis vinifera]
Length = 373
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 109/171 (63%), Gaps = 3/171 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+ YVG+L+ VT+ L++LF Q G VV+V V +D T GYG+V F + ++A A+++
Sbjct: 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKV 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKV 143
LN L GKPIRV + +D GA N+F+ NLD +D K L+DTFSAFG I++ K+
Sbjct: 86 LNMIKLYGKPIRVNKASQDKKSLDVGA-NLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G S+G+GFV +D+ E++ AIE +NG L ++Q+ V + +K +
Sbjct: 145 MRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL TEE L + F + G + + V +D + +GFV F + +DA A++ LN
Sbjct: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL++ NLD +D++ L
Sbjct: 88 MIKLYGKPIRVNKA-SQDKKSLDV----------------GANLFVGNLDPDVDEKLLYD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GFV++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ +A++ Q A Y+ NLD + +E L +LF G + + V +D + + +G GFV F +
Sbjct: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ +N + KP+ V
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRV 98
>gi|297735183|emb|CBI17545.3| unnamed protein product [Vitis vinifera]
Length = 238
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 109/171 (63%), Gaps = 3/171 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+ YVG+L+ VT+ L++LF Q G VV+V V +D T GYG+V F + ++A A+++
Sbjct: 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKV 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKV 143
LN L GKPIRV + +D GA N+F+ NLD +D K L+DTFSAFG I++ K+
Sbjct: 86 LNMIKLYGKPIRVNKASQDKKSLDVGA-NLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G S+G+GFV +D+ E++ AIE +NG L ++Q+ V + +K +
Sbjct: 145 MRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL TEE L + F + G + + V +D + +GFV F + +DA A++ LN
Sbjct: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL++ NLD +D++ L
Sbjct: 88 MIKLYGKPIRVNKASQ-DKKSLDV----------------GANLFVGNLDPDVDEKLLYD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GFV++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ +A++ Q A Y+ NLD + +E L +LF G + + V +D + + +G GFV F +
Sbjct: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ +N + KP+ V
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRV 98
>gi|349732184|ref|NP_001025498.3| ELAV-like protein 2 [Xenopus (Silurana) tropicalis]
gi|288561906|sp|Q28GD4.2|ELAV2_XENTR RecName: Full=ELAV-like protein 2; AltName: Full=Protein ElrB
Length = 375
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 51/310 (16%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 127 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 184
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGM------------LLNDKQVYVGHFLRK 190
D + G S+G GF++FD A++AI+ LNG N+ V H +
Sbjct: 185 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHTILS 244
Query: 191 QERDTEINK------------SKFTN-----------------------VYVKNLSESTT 215
Q + + S+F+ ++V NL+
Sbjct: 245 QLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAPDAD 304
Query: 216 EEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274
E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +LNG + D+
Sbjct: 305 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 364
Query: 275 VGKAQKKSER 284
V K+ +
Sbjct: 365 VSFKTSKTHK 374
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 149/313 (47%), Gaps = 44/313 (14%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG IT
Sbjct: 128 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 181
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV------GKAQKKSER 284
S +++ G S+ GF+ F+ +A A++ LNG+K + +QK +
Sbjct: 182 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHT 241
Query: 285 ELELKHQ-----FEQNMKEAADKFQ------------------------GANLYIKNLDD 315
L +Q + + + A +F G +++ NL
Sbjct: 242 ILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAP 301
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +NG + +
Sbjct: 302 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 361
Query: 375 PLYVALAQRKEDR 387
L V+ K +
Sbjct: 362 VLQVSFKTSKTHK 374
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG + K V A+ S + ANLY+ L ++ ++
Sbjct: 127 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 168
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYV 378
L+QLFS +G I + +++ D +G+SRG GF+ F EA A+ +NG+ ++P+ V
Sbjct: 169 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 228
Query: 379 ALAQRKEDR 387
A +
Sbjct: 229 KFANNPSQK 237
>gi|402697279|gb|AFQ90827.1| polyA-binding protein cytoplasmic 1, partial [Chrysemys picta]
Length = 127
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 88/126 (69%), Gaps = 3/126 (2%)
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILS KV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 1 NILSXKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 59
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG S VM D GKSK FGFV+FE +
Sbjct: 60 LGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESGKSKGFGFVSFERHE 119
Query: 255 DAARAV 260
DA +AV
Sbjct: 120 DAQKAV 125
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 83/137 (60%), Gaps = 11/137 (8%)
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 2 ILSXKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 60
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
+ A +F N+YIKN + +DDE+LK+LF S KVM D SG S+G
Sbjct: 61 GAR--------AKEF--TNVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESGKSKGF 110
Query: 349 GFVAFSTPEEASRALLE 365
GFV+F E+A +A+ E
Sbjct: 111 GFVSFERHEDAQKAVAE 127
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIK 117
S GYG+V+F + A RA+E +N LN + + V + R + GA N++IK
Sbjct: 14 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 73
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
N + +D + L + F LS KV TD +G+SKG+GFV F+ E AQKA+
Sbjct: 74 NFGEDMDDERLKELFGXXXPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 125
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 331 SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
+I S KV+ D +G S+G GFV F T E A RA+ +MNG ++ + ++V + +++R A
Sbjct: 1 NILSXKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 59
Query: 391 L 391
L
Sbjct: 60 L 60
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF +SV+V D S +S G+G+V+F
Sbjct: 61 GARAKEF--TNVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESG-KSKGFGFVSFER 117
Query: 75 AQEAARAL 82
++A +A+
Sbjct: 118 HEDAQKAV 125
>gi|365812510|ref|NP_001002172.2| ELAV-like protein 2 [Danio rerio]
Length = 389
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 148/318 (46%), Gaps = 64/318 (20%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
N ++ T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+
Sbjct: 60 PNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEP 119
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++A +A+ LN L K I+V Y+ PS N+++ L K + K L FS F
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQF 177
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG-------------------- 174
G I++ ++ D + G S+G GF++FD A++AI+ LNG
Sbjct: 178 GRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQ 237
Query: 175 ---------MLLNDKQVYVGHFLRKQER---DTEIN-----KSKFTN------------- 204
+ + + Y G ++ +R D +N KS+F+
Sbjct: 238 KSSQALLSHLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGVTSLAGIN 297
Query: 205 ----------VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENS 253
++V NL+ E L + FG +G +T+ V+RD K K FGFV N
Sbjct: 298 LPAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 357
Query: 254 DDAARAVEALNGKKFDDK 271
D+AA A+ +LNG + D+
Sbjct: 358 DEAAVAIASLNGYRLGDR 375
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 174/395 (44%), Gaps = 65/395 (16%)
Query: 51 VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN---FTPLNGKPIRVMYSHRDPSLR 107
++VR+C S RS + ++ AA ++ N T NG P V + P
Sbjct: 1 MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPSCTSSNG-PNSVSNTCTSPVEM 59
Query: 108 KSGA----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
+G+ N+ + L + + + L F + G I SCK+ D + GQS GYGFV +
Sbjct: 60 PNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEP 119
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
+ A+KAI LNG+ L K + V + + I + N+YV L ++ T+++L++
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQL 173
Query: 223 FGEYG-TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF------------- 268
F ++G ITS +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 174 FSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFAN 233
Query: 269 ----------------DDKEWYVGKAQKKSER---------ELELKHQFEQNMKEAADKF 303
Y G ++++R +K +F +
Sbjct: 234 NPSQKSSQALLSHLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGVTSL 293
Query: 304 QGANL----------YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVA 352
G NL ++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV
Sbjct: 294 AGINLPAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 353
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
+ +EA+ A+ +NG + + L V+ K +
Sbjct: 354 MTNYDEAAVAIASLNGYRLGDRVLQVSFKTNKTHK 388
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 22/192 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ DA +A+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAIN 127
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG + K V A+ S + ANLY+ L ++ ++
Sbjct: 128 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 169
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYV 378
L+QLFS FG I + +++ D +G+SRG GF+ F EA A+ +NG+ ++P+ V
Sbjct: 170 LEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITV 229
Query: 379 ALAQRKEDRRAR 390
A + ++
Sbjct: 230 KFANNPSQKSSQ 241
>gi|117557982|gb|AAI27339.1| ELAV (embryonic lethal, abnormal vision)-like 2 (Hu antigen B)
[Xenopus (Silurana) tropicalis]
Length = 346
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 51/310 (16%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 38 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 97
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 98 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 155
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGM------------LLNDKQVYVGHFLRK 190
D + G S+G GF++FD A++AI+ LNG N+ V H +
Sbjct: 156 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHTILS 215
Query: 191 QERDTEINK------------SKFTN-----------------------VYVKNLSESTT 215
Q + + S+F+ ++V NL+
Sbjct: 216 QLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAPDAD 275
Query: 216 EEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274
E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +LNG + D+
Sbjct: 276 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 335
Query: 275 VGKAQKKSER 284
V K+ +
Sbjct: 336 VSFKTSKTHK 345
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 149/313 (47%), Gaps = 44/313 (14%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 39 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 98
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG IT
Sbjct: 99 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 152
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV------GKAQKKSER 284
S +++ G S+ GF+ F+ +A A++ LNG+K + +QK +
Sbjct: 153 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHT 212
Query: 285 ELELKHQ-----FEQNMKEAADKFQ------------------------GANLYIKNLDD 315
L +Q + + + A +F G +++ NL
Sbjct: 213 ILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAP 272
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +NG + +
Sbjct: 273 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 332
Query: 375 PLYVALAQRKEDR 387
L V+ K +
Sbjct: 333 VLQVSFKTSKTHK 345
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 38 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 97
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG + K V A+ S + ANLY+ L ++ ++
Sbjct: 98 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 139
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYV 378
L+QLFS +G I + +++ D +G+SRG GF+ F EA A+ +NG+ ++P+ V
Sbjct: 140 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 199
Query: 379 ALAQRKEDR 387
A +
Sbjct: 200 KFANNPSQK 208
>gi|49119672|gb|AAH72716.1| Zgc:91918 [Danio rerio]
Length = 360
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 152/331 (45%), Gaps = 64/331 (19%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
N ++ T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+
Sbjct: 31 PNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEP 90
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++A +A+ LN L K I+V Y+ PS N+++ L K + K L FS F
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQF 148
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG-------------------- 174
G I++ ++ D + G S+G GF++FD A++AI+ LNG
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQ 208
Query: 175 ---------MLLNDKQVYVGHFLRKQER---DTEIN-----KSKFTN------------- 204
+ + + Y G ++ +R D +N KS+F+
Sbjct: 209 KSSQALLSHLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGVTSLAGIN 268
Query: 205 ----------VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENS 253
++V NL+ E L + FG +G +T+ V+RD K K FGFV N
Sbjct: 269 LPAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 328
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
D+AA A+ +LNG + D+ V K+ +
Sbjct: 329 DEAAVAIASLNGYRLGDRVLQVSFKTNKTHK 359
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 147/326 (45%), Gaps = 57/326 (17%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + A+KAI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F ++G IT
Sbjct: 100 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQFGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF---------------------- 268
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQKSSQA 213
Query: 269 -------DDKEWYVGKAQKKSER---------ELELKHQFEQNMKEAADKFQGANL---- 308
Y G ++++R +K +F + G NL
Sbjct: 214 LLSHLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGVTSLAGINLPAHA 273
Query: 309 ------YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASR 361
++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+
Sbjct: 274 GTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAV 333
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDR 387
A+ +NG + + L V+ K +
Sbjct: 334 AIASLNGYRLGDRVLQVSFKTNKTHK 359
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 22/192 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ DA +A+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAIN 98
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG + K V A+ S + ANLY+ L ++ ++
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 140
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYV 378
L+QLFS FG I + +++ D +G+SRG GF+ F EA A+ +NG+ ++P+ V
Sbjct: 141 LEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITV 200
Query: 379 ALAQRKEDRRAR 390
A + ++
Sbjct: 201 KFANNPSQKSSQ 212
>gi|356544204|ref|XP_003540544.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 364
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 7/228 (3%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+ YVG+L+ + + L++LF Q G VV+V V +D T + GYG+V F + ++A A+++
Sbjct: 26 TAYVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKV 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKV 143
LN L GKPIRV + +D GA N+FI NLD +D K L+DTFSAFG I++ K+
Sbjct: 86 LNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
Query: 144 ATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
D G S+G+GF+ +D+ E++ AIE +NG L ++Q+ V + +K DT+ +
Sbjct: 145 MRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK---DTKGERHGT 201
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTIT-SAVVMRDGDGKSKCFGFVN 249
V S TT++ + G T + +G FVN
Sbjct: 202 PAERVLAASNPTTQKSRPHTLFASGPPTLPSAPQANGVAPVPPRPFVN 249
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL EE L + F + G + + V +D + + +GFV F + +DA A++ LN
Sbjct: 28 YVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL+I NLD +D++ L
Sbjct: 88 MIKLYGKPIRVNKA-SQDKKSLDV----------------GANLFIGNLDPDVDEKLLYD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GF+++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ AA++ Q A Y+ NLD I +E L +LF G + + V +D + +G GFV F +
Sbjct: 16 QHAAERNQDATAYVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ +N + KP+ V
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRV 98
>gi|50290407|ref|XP_447635.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526945|emb|CAG60572.1| unnamed protein product [Candida glabrata]
Length = 602
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 105/404 (25%), Positives = 181/404 (44%), Gaps = 64/404 (15%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L+VG+L +T +L ++F +S +VC + RSLG+GY+NF N ++A RA E
Sbjct: 65 ALFVGNLAEEITSERLTEMFKVYKSFISAKVCTNADDNRSLGHGYINFGNKEDAERATED 124
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD---KAIDHKALHDTFSAFGNILSC 141
N+ + GK IR+M S RD RK+ NIF NL + + H+ +D F +GN+LS
Sbjct: 125 FNYNKIMGKEIRIMPSIRDSVYRKNFGTNIFFSNLPLQKEKLTHRMFYDIFRKYGNVLSV 184
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HF---LRKQ------ 191
K+ + SK GFV F+++ A+ I++ N + G HF LRK+
Sbjct: 185 KLDS-----SKNIGFVYFEDDTIARDVIKEFNNKEFLGNIISCGLHFDKELRKKPNFDKQ 239
Query: 192 ----------ERDTEI---NKSKF------------TNVYVKNLSESTTEEDLQKSFGEY 226
E++ EI NK + +++KNL T ++ F E
Sbjct: 240 ISKLDDDIIIEKEKEIFDSNKVEIKIDKDKVAIIQPNGIFIKNLPLDTNNNEILAIFSEV 299
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G I S + + + + FV +++ +A+ NGK ++ +V A K
Sbjct: 300 GPIKSVFLSPLNESREYLWAFVTYKDKASVEKAISLFNGKAIGNRNVFVTHAYSK----- 354
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMR--DPSG 343
N+ L++ NL D + LKQ+ + KV + +P
Sbjct: 355 -------YNIPTPK-----PILFLSNLSPICDRKFLKQIMNQLSVKPEDIKVHQSENPEH 402
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
++ +G + F T ++ +A +N K+V +Y + K+++
Sbjct: 403 VT-STGTIQFKTQDDLDKAKKFLNNKLVSGSIIYATTRKSKKNQ 445
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 64/310 (20%), Positives = 113/310 (36%), Gaps = 58/310 (18%)
Query: 21 FGTTSLYVGDL---EANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
FGT +++ +L + +T YD+F + G V+SV+ L + +++G+ Y F +
Sbjct: 150 FGT-NIFFSNLPLQKEKLTHRMFYDIFRKYGNVLSVK----LDSSKNIGFVY--FEDDTI 202
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSG--------------------------- 110
A ++ N G I H D LRK
Sbjct: 203 ARDVIKEFNNKEFLGNIISCGL-HFDKELRKKPNFDKQISKLDDDIIIEKEKEIFDSNKV 261
Query: 111 -------------AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
IFIKNL ++ + FS G I S ++ + + FV
Sbjct: 262 EIKIDKDKVAIIQPNGIFIKNLPLDTNNNEILAIFSEVGPIKSVFLSPLNESREYLWAFV 321
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEE 217
+ ++ S +KAI NG + ++ V+V H K T +++ NLS +
Sbjct: 322 TYKDKASVEKAISLFNGKAIGNRNVFVTHAYSKYNIPTPK-----PILFLSNLSPICDRK 376
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCF--GFVNFENSDDAARAVEALNGKKFDDKEWYV 275
L++ + + + + G + F+ DD +A + LN K Y
Sbjct: 377 FLKQIMNQLSVKPEDIKVHQSENPEHVTSTGTIQFKTQDDLDKAKKFLNNKLVSGSIIYA 436
Query: 276 GKAQKKSERE 285
+ K +E
Sbjct: 437 TTRKSKKNQE 446
>gi|338762832|gb|AEI98619.1| hypothetical protein 111O18.6 [Coffea canephora]
Length = 368
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 108/171 (63%), Gaps = 3/171 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+ YVG+L+ V++ L++LF Q G VV+V V +D T GYG+V F + ++A A+++
Sbjct: 26 TAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNSHQGYGFVEFRSEEDADYAIKV 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKV 143
LN L GKPIRV + +D GA N+FI NLD +D K L+DTFSAFG I++ K+
Sbjct: 86 LNMIKLYGKPIRVNKASQDKKSVDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
Query: 144 ATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D G S+G+GF+ +D+ E++ AIE +NG L ++Q+ V + +K +
Sbjct: 145 MRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS-KCFGFVNFENSDDAARAVEALN 264
YV NL +EE L + F + G + + V +D S + +GFV F + +DA A++ LN
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNSHQGYGFVEFRSEEDADYAIKVLN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + K++ D GANL+I NLD +D++ L
Sbjct: 88 MIKLYGKPIRVNKASQD---------------KKSVDV--GANLFIGNLDPDVDEKLLYD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GF+++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ +A++ Q A Y+ NLD + +E L +LF G + + V +D + +G GFV F +
Sbjct: 16 QHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNSHQGYGFVEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ +N + KP+ V
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRV 98
>gi|89266927|emb|CAJ82281.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Xenopus (Silurana) tropicalis]
Length = 374
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 145/309 (46%), Gaps = 50/309 (16%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 127 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 184
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGM------------LLNDKQVYVGHFLRK 190
D + G S+G GF++FD A++AI+ LNG N+ V H +
Sbjct: 185 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHTILS 244
Query: 191 QERDT-----------EINKSKFTN-----------------------VYVKNLSESTTE 216
Q + + + +F+ ++V NL+ E
Sbjct: 245 QLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAPDADE 304
Query: 217 EDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
L + FG +G +T+ V+RD K K FGFV N D+AA A+ +LNG + D+ V
Sbjct: 305 SILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 364
Query: 276 GKAQKKSER 284
K+ +
Sbjct: 365 SFKTSKTHK 373
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/379 (25%), Positives = 173/379 (45%), Gaps = 48/379 (12%)
Query: 51 VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP-----IRVMYSHRDPS 105
++VR+C S RS + ++ AA ++ N N I S + S
Sbjct: 1 MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANCPNTINNCSSPVESS 60
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEES 164
+ N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + +
Sbjct: 61 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 120
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A+KAI LNG+ L K + V + + I + N+YV L ++ T+++L++ F
Sbjct: 121 AEKAINTLNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFS 174
Query: 225 EYG-TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV------GK 277
+YG ITS +++ G S+ GF+ F+ +A A++ LNG+K +
Sbjct: 175 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNP 234
Query: 278 AQKKSERELELKHQ-----FEQNMKEAADKFQ-----------------------GANLY 309
+QK + L +Q + + + A +F+ G ++
Sbjct: 235 SQKVNHTILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINFPGHAGTGWCIF 294
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNG 368
+ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +NG
Sbjct: 295 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 354
Query: 369 KMVVSKPLYVALAQRKEDR 387
+ + L V+ K +
Sbjct: 355 YRLGDRVLQVSFKTSKTHK 373
>gi|444319702|ref|XP_004180508.1| hypothetical protein TBLA_0D04940 [Tetrapisispora blattae CBS 6284]
gi|387513550|emb|CCH60989.1| hypothetical protein TBLA_0D04940 [Tetrapisispora blattae CBS 6284]
Length = 665
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 104/350 (29%), Positives = 153/350 (43%), Gaps = 81/350 (23%)
Query: 9 QNVNGGGANANQ-------------FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV 55
+N+N G NAN+ + +L++G L VT L + F +S +V
Sbjct: 66 KNLNSGSTNANEEEQKDKRNNSLNDKNSFALFIGGLNQRVTKEMLKEEFKDFPSFISAKV 125
Query: 56 CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP-IRVMYSHRDPSLRKSGAGNI 114
C D+ T++SLGYGY+NFSN + R +E N+ L G P I++M S R+ RK+ N+
Sbjct: 126 CVDMKTKKSLGYGYLNFSNQNDILRLVEKYNYRSLFGCPEIKIMPSLRNTFYRKNIGTNV 185
Query: 115 FIKNL---DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 171
F NL + + + +DTF +G ILSCK+ K GFV FDN ESA+K I +
Sbjct: 186 FFSNLPLHNPQLTTRYFYDTFKVYGRILSCKL-----DYRKNIGFVYFDNNESAKKVIYE 240
Query: 172 LNGMLLNDKQVYVG-HF-----------LRKQERDTEI---------------------- 197
N ++ G HF RKQ+ D++I
Sbjct: 241 YNEKNFLGNKILCGIHFDKEVRELPDFSQRKQKLDSKIIIKEELNCAGKDIEIQQQYEKQ 300
Query: 198 -------NKSKFTN-----------------VYVKNLSESTTEEDLQKSFGEYGTITSAV 233
K+ N V+VKNL + EE+L F G I S
Sbjct: 301 QNEKLQLQIQKYPNQRIQDETFGVKLPHPNSVFVKNLPLYSEEEELLDYFSSIGPIKSIF 360
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+ KS + + ++N++DA A+E N + DK YV KAQ K +
Sbjct: 361 SSKVYRYKS-LWSIITYKNNEDANFALEKFNETNYKDKIIYVTKAQTKPK 409
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 135/337 (40%), Gaps = 67/337 (19%)
Query: 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
R+ SL + +FI L++ + + L + F F + +S KV D+ +S GYG++ F
Sbjct: 84 RNNSLNDKNSFALFIGGLNQRVTKEMLKEEFKDFPSFISAKVCVDMKTKKSLGYGYLNFS 143
Query: 161 NEESAQKAIEKLN-GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNL---SESTTE 216
N+ + +EK N L ++ + LR +T K+ TNV+ NL + T
Sbjct: 144 NQNDILRLVEKYNYRSLFGCPEIKIMPSLR----NTFYRKNIGTNVFFSNLPLHNPQLTT 199
Query: 217 EDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276
+F YG I S + K GFV F+N++ A + + N K F + G
Sbjct: 200 RYFYDTFKVYGRILSCKL-----DYRKNIGFVYFDNNESAKKVIYEYNEKNFLGNKILCG 254
Query: 277 KAQKKSEREL---------------------------ELKHQFEQNMKE----------- 298
K REL E++ Q+E+ E
Sbjct: 255 IHFDKEVRELPDFSQRKQKLDSKIIIKEELNCAGKDIEIQQQYEKQQNEKLQLQIQKYPN 314
Query: 299 --AADKFQGANL------YIKNLDDSIDDEKLKQLFS---PFGSITSCKVMRDPSGISRG 347
D+ G L ++KNL ++E+L FS P SI S KV R S S
Sbjct: 315 QRIQDETFGVKLPHPNSVFVKNLPLYSEEEELLDYFSSIGPIKSIFSSKVYRYKSLWS-- 372
Query: 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
+ + E+A+ AL + N K +YV AQ K
Sbjct: 373 --IITYKNNEDANFALEKFNETNYKDKIIYVTKAQTK 407
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 19/199 (9%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S++V +L + +L D F+ +G + S+ + + +SL + + + N ++A ALE
Sbjct: 331 SVFVKNLPLYSEEEELLDYFSSIGPIKSIFSSK-VYRYKSL-WSIITYKNNEDANFALEK 388
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIK--NLDKAIDHKALHDTFS-AFGNILSC 141
N T K I V + P + + + FIK NL L F +F NI S
Sbjct: 389 FNETNYKDKIIYVTKAQTKPKVIEEKKCDTFIKLSNLSILCSPPYLFHLFKQSFINIESL 448
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-----HFLRKQERDTE 196
++ L + F++ ++ A + LN L+ ++ VG + +E+ E
Sbjct: 449 QLVPSLGAPNTYEAFIRCPTKKDAIIIFQLLNRKLIGTDRISVGWSSVEEYYEPREKKVE 508
Query: 197 ---------INKSKFTNVY 206
++K+K TN+Y
Sbjct: 509 FKPEANGVKLDKNKKTNIY 527
>gi|255550690|ref|XP_002516394.1| spliceosome associated protein, putative [Ricinus communis]
gi|223544492|gb|EEF46011.1| spliceosome associated protein, putative [Ricinus communis]
Length = 376
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 107/168 (63%), Gaps = 3/168 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+ YVG+L+ V++ L++LF Q G VV+V V +D T GYG+V F + ++A A+++
Sbjct: 26 TAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKI 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKV 143
+N L GKPIRV + +D GA N+FI NLD +D K LHDTFSAFG I++ K+
Sbjct: 86 MNMIKLFGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLHDTFSAFGVIVTNPKI 144
Query: 144 ATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
D G S+G+GF+ +D+ +++ AIE +NG L ++Q+ V + +K
Sbjct: 145 MRDPETGNSRGFGFISYDSFDASDAAIEAMNGQYLCNRQITVSYAYKK 192
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL +EE L + F + G + + V +D + +GFV F + +DA A++ +N
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKIMN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL+I NLD +D++ L
Sbjct: 88 MIKLFGKPIRVNKA-SQDKKSLDV----------------GANLFIGNLDPDVDEKLLHD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GF+++ + + + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFDASDAAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 115 FIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLN 173
++ NLD + + L + F G +++ V D + +GYGFV+F +EE A AI+ +N
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKIMN 87
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-TSA 232
+ L K + V + ++ ++ N+++ NL E+ L +F +G I T+
Sbjct: 88 MIKLFGKPIRVNK-ASQDKKSLDVG----ANLFIGNLDPDVDEKLLHDTFSAFGVIVTNP 142
Query: 233 VVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+MRD + G S+ FGF+++++ D + A+EA+NG+ +++ V A KK +
Sbjct: 143 KIMRDPETGNSRGFGFISYDSFDASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ +A++ Q A Y+ NLD + +E L +LF G + + V +D + + +G GFV F +
Sbjct: 16 QHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ MN + KP+ V
Sbjct: 76 EEDADYAIKIMNMIKLFGKPIRV 98
>gi|294928940|ref|XP_002779243.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239888268|gb|EER11038.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 238
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 83/119 (69%)
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
YV +AQ K+ER LK QF +F G NLY+KNL +++DD +LK++F PFG+IT
Sbjct: 51 YVARAQSKAERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTIT 110
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S KVM D G+SRG GFV FST EEA++A+ +M+ K++ KPLYV + +++E R RLQ
Sbjct: 111 SVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQ 169
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
G N+++KNL + +D L F FG I S KV TD G S+G+GFV F E A KA+
Sbjct: 81 GGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAV 140
Query: 170 EKLNGMLLNDKQVYVGHFLRKQER 193
++ L+ K +YVG ++++R
Sbjct: 141 TDMHLKLIGGKPLYVGMHEKREQR 164
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
N+YVKNL E+ + +L++ F +GTITS VM D G S+ FGFV F ++A +AV
Sbjct: 83 VNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTD 142
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQF 292
++ K K YVG +K+ +R L+ ++
Sbjct: 143 MHLKLIGGKPLYVGMHEKREQRLERLQQRY 172
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 9 QNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYG 68
Q G GA +FG +LYV +L V D++L +F G + SV+V D S G+G
Sbjct: 68 QFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTD-DKGVSRGFG 126
Query: 69 YVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRK 108
+V FS +EA +A+ ++ + GKP+ V M+ R+ L +
Sbjct: 127 FVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLER 167
>gi|303275187|ref|XP_003056892.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461244|gb|EEH58537.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 302
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 109/171 (63%), Gaps = 3/171 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVG+L+ T+ L+++F Q G VV+V V +D + GYG+V F+N ++A A+++
Sbjct: 9 TIYVGNLDLACTEEILWEVFVQAGPVVNVYVPKDRVSNAHQGYGFVEFANEEDADYAIKV 68
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
LN L+GKP+RV + +D GA N+F+ NLD +D K L+DTFSAFG +++ K+
Sbjct: 69 LNMIKLHGKPVRVNKASQDKKSNDVGA-NLFVGNLDSELDEKLLYDTFSAFGVVITTPKI 127
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G S+G+GFV +D+ E+A AIE +NG L ++ + V +K R
Sbjct: 128 MRDPDSGNSRGFGFVSYDSFEAADAAIEAMNGQFLCNRPISVTFAYKKDTR 178
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 101/190 (53%), Gaps = 22/190 (11%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV NL + TEE L + F + G + + V +D + +GFV F N +DA A++ L
Sbjct: 10 IYVGNLDLACTEEILWEVFVQAGPVVNVYVPKDRVSNAHQGYGFVEFANEEDADYAIKVL 69
Query: 264 NGKKFDDKEWYVGKA-QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
N K K V KA Q K ++ GANL++ NLD +D++ L
Sbjct: 70 NMIKLHGKPVRVNKASQDKKSNDV------------------GANLFVGNLDSELDEKLL 111
Query: 323 KQLFSPFGS-ITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
FS FG IT+ K+MRDP SG SRG GFV++ + E A A+ MNG+ + ++P+ V
Sbjct: 112 YDTFSAFGVVITTPKIMRDPDSGNSRGFGFVSYDSFEAADAAIEAMNGQFLCNRPISVTF 171
Query: 381 AQRKEDRRAR 390
A +K+ R R
Sbjct: 172 AYKKDTRGER 181
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPE 357
A D+ Q A +Y+ NLD + +E L ++F G + + V +D S +G GFV F+ E
Sbjct: 1 AQDRNQDATIYVGNLDLACTEEILWEVFVQAGPVVNVYVPKDRVSNAHQGYGFVEFANEE 60
Query: 358 EASRALLEMNGKMVVSKPLYV 378
+A A+ +N + KP+ V
Sbjct: 61 DADYAIKVLNMIKLHGKPVRV 81
>gi|432101459|gb|ELK29641.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 146
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 89/122 (72%), Gaps = 2/122 (1%)
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK K VG AQK E++ ELK +FEQ +E ++QG NLYIKNLDD++ DE L
Sbjct: 1 MNGKDISGKVISVGCAQKTVEQQAELKWKFEQLKQERISRYQGVNLYIKNLDDTVGDENL 60
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+P EA +A+ +MNG ++ SKPLYVALA+
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSP-EAIKAVTKMNGCVMSSKPLYVALAR 118
Query: 383 RK 384
R+
Sbjct: 119 RR 120
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 70/113 (61%), Gaps = 8/113 (7%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
KQER I++ + N+Y+KNL ++ +E+L+K F +G+ITSA VM + DG+SK FGFV
Sbjct: 34 KQER---ISRYQGVNLYIKNLDDTVGDENLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 89
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
F +S +A +AV +NG K YV A+++ + L +Q+M+ A K
Sbjct: 90 F-SSPEAIKAVTKMNGCVMSSKPLYVALARRRGKGSAYLT---DQDMQWVAGK 138
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD + + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ K+
Sbjct: 45 NLYIKNLDDTVGDENLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPE-AIKAVTKM 102
Query: 173 NGMLLNDKQVYVGHFLRK 190
NG +++ K +YV R+
Sbjct: 103 NGCVMSSKPLYVALARRR 120
>gi|291383147|ref|XP_002708097.1| PREDICTED: ELAV-like 2-like isoform 2 [Oryctolagus cuniculus]
Length = 376
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 140/297 (47%), Gaps = 51/297 (17%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 128 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 185
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG---------------------------- 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 186 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILS 245
Query: 175 -MLLNDKQVYVGHFLRKQERDTEINKSKFTN------------------VYVKNLSESTT 215
+ + + Y G ++ +R + + ++V NL+
Sbjct: 246 QLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDAD 305
Query: 216 EEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK 271
E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +LNG + D+
Sbjct: 306 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 362
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 150/313 (47%), Gaps = 44/313 (14%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG IT
Sbjct: 129 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 182
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV------GKAQKKSER 284
S +++ G S+ GF+ F+ +A A++ LNG+K + +QK ++
Sbjct: 183 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 242
Query: 285 ELELKHQ-----FEQNMKEAADKFQ------------------------GANLYIKNLDD 315
L +Q + + + A +F G +++ NL
Sbjct: 243 ILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAP 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +NG + +
Sbjct: 303 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 362
Query: 375 PLYVALAQRKEDR 387
L V+ K +
Sbjct: 363 VLQVSFKTNKTHK 375
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG + K V A+ S + ANLY+ L ++ ++
Sbjct: 128 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 169
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYV 378
L+QLFS +G I + +++ D +GISRG GF+ F EA A+ +NG+ ++P+ V
Sbjct: 170 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 229
Query: 379 ALAQRKEDR 387
A +
Sbjct: 230 KFANNPSQK 238
>gi|357460829|ref|XP_003600696.1| Splicing factor 3B subunit [Medicago truncatula]
gi|355489744|gb|AES70947.1| Splicing factor 3B subunit [Medicago truncatula]
Length = 379
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 110/171 (64%), Gaps = 3/171 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+ YVG+L+ +++ L++LF Q G VV+V V +D T + GYG+V F + ++A A+++
Sbjct: 26 TAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKV 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKV 143
LN L GKPIRV + +D GA N+FI NLD +D K L+DTFSAFG I++ K+
Sbjct: 86 LNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G S+G+GF+ +D+ E++ AIE +NG L ++Q+ V + +K +
Sbjct: 145 MRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 102/188 (54%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL +EE L + F + G + + V +D + + +GFV F + +DA A++ LN
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL+I NLD +D++ L
Sbjct: 88 MIKLYGKPIRVNKA-SQDKKSLDV----------------GANLFIGNLDPDVDEKLLYD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GF+++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ +A++ Q A Y+ NLD I +E L +LF G + + V +D + +G GFV F +
Sbjct: 16 QHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ +N + KP+ V
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRV 98
>gi|395514482|ref|XP_003761446.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Sarcophilus
harrisii]
Length = 389
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 146/310 (47%), Gaps = 64/310 (20%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 128 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 185
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG---------------------------- 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 186 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPSATEPITVKFANNPSQKTNQAILS 245
Query: 175 -MLLNDKQVYVGHFLRKQER---DTEIN-----KSKFTN--------------------- 204
+ + + Y G ++ +R D +N KS+F+
Sbjct: 246 QLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHAGTG 305
Query: 205 --VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVE 261
++V NL+ E L + FG +G +T+ V+RD K K FGFV N D+AA A+
Sbjct: 306 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 365
Query: 262 ALNGKKFDDK 271
+LNG + D+
Sbjct: 366 SLNGYRLGDR 375
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 57/326 (17%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG IT
Sbjct: 129 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 182
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD-------------------- 270
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 183 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPSATEPITVKFANNPSQKTNQA 242
Query: 271 ---------KEWYVGKAQKKSER---------ELELKHQFEQNMKEAADKFQGANL---- 308
Y G ++++R +K +F + G N+
Sbjct: 243 ILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHA 302
Query: 309 ------YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASR 361
++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+
Sbjct: 303 GTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAM 362
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDR 387
A+ +NG + + L V+ K +
Sbjct: 363 AIASLNGYRLGDRVLQVSFKTNKTHK 388
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG + K V A+ S + ANLY+ L ++ ++
Sbjct: 128 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 169
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVS--KPLYV 378
L+QLFS +G I + +++ D +G+SRG GF+ F EA A+ +NG+ S +P+ V
Sbjct: 170 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPSATEPITV 229
Query: 379 ALAQRKEDR 387
A +
Sbjct: 230 KFANNPSQK 238
>gi|395514484|ref|XP_003761447.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Sarcophilus
harrisii]
Length = 347
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 144/310 (46%), Gaps = 51/310 (16%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 99 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG---------------------------- 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPSATEPITVKFANNPSQKTNQAILS 216
Query: 175 -MLLNDKQVYVGHFLRKQERDTEINKSKFTN------------------VYVKNLSESTT 215
+ + + Y G ++ +R + + ++V NL+
Sbjct: 217 QLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHAGTGWCIFVYNLAPDAD 276
Query: 216 EEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274
E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +LNG + D+
Sbjct: 277 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 336
Query: 275 VGKAQKKSER 284
V K+ +
Sbjct: 337 VSFKTNKTHK 346
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 150/313 (47%), Gaps = 44/313 (14%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG IT
Sbjct: 100 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV------GKAQKKSER 284
S +++ G S+ GF+ F+ +A A++ LNG+K + +QK ++
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPSATEPITVKFANNPSQKTNQA 213
Query: 285 ELELKHQ-----FEQNMKEAADKFQ------------------------GANLYIKNLDD 315
L +Q + + + A +F G +++ NL
Sbjct: 214 ILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHAGTGWCIFVYNLAP 273
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +NG + +
Sbjct: 274 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 333
Query: 375 PLYVALAQRKEDR 387
L V+ K +
Sbjct: 334 VLQVSFKTNKTHK 346
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG + K V A+ S + ANLY+ L ++ ++
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 140
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVS--KPLYV 378
L+QLFS +G I + +++ D +G+SRG GF+ F EA A+ +NG+ S +P+ V
Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPSATEPITV 200
Query: 379 ALAQRKEDR 387
A +
Sbjct: 201 KFANNPSQK 209
>gi|449459840|ref|XP_004147654.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
gi|449498825|ref|XP_004160645.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
Length = 379
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 109/171 (63%), Gaps = 3/171 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+ YVG+L+ V++ L++LF Q G VV+V V +D T GYG++ F + ++A A+++
Sbjct: 26 TAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKV 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKV 143
LN L GKPIRV + +D GA N+FI NLD +D K L+DTFSAFG I++ K+
Sbjct: 86 LNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G S+G+GF+ +D+ E++ AIE +NG L ++Q+ V + +K +
Sbjct: 145 MRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL +EE L + F + G + + V +D + +GF+ F + +DA A++ LN
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL+I NLD +D++ L
Sbjct: 88 MIKLYGKPIRVNKA-SQDKKSLDV----------------GANLFIGNLDPDVDEKLLYD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GF+++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ A ++ Q A Y+ NLD + +E L +LF G + + V +D + + +G GF+ F +
Sbjct: 16 QHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ +N + KP+ V
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRV 98
>gi|296484904|tpg|DAA27019.1| TPA: ELAV-like 2-like [Bos taurus]
Length = 620
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 140/296 (47%), Gaps = 50/296 (16%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 313 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 372
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 373 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 430
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG---------------------------- 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 431 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILS 490
Query: 175 -MLLNDKQVYVGHFLRKQER-----------------DTEINKSKFTNVYVKNLSESTTE 216
+ + + Y G ++ +R + + ++V NL+ E
Sbjct: 491 QLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADE 550
Query: 217 EDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK 271
L + FG +G +T+ V+RD K K FGFV N D+AA A+ +LNG + D+
Sbjct: 551 SILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 606
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 144/293 (49%), Gaps = 43/293 (14%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 314 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 373
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG IT
Sbjct: 374 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 427
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV------GKAQKKSER 284
S +++ G S+ GF+ F+ +A A++ LNG+K + +QK ++
Sbjct: 428 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 487
Query: 285 ELELKHQ-----FEQNMKEAADKFQ-----------------------GANLYIKNLDDS 316
L +Q + + + A +F+ G +++ NL
Sbjct: 488 ILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPD 547
Query: 317 IDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNG 368
D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +NG
Sbjct: 548 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 600
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 313 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 372
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG + K V A+ S + ANLY+ L ++ ++
Sbjct: 373 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 414
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYV 378
L+QLFS +G I + +++ D +GISRG GF+ F EA A+ +NG+ ++P+ V
Sbjct: 415 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 474
Query: 379 ALA 381
A
Sbjct: 475 KFA 477
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 314 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 373
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 374 LNGLRLQTKTIKVSYAR 390
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,965,481,076
Number of Sequences: 23463169
Number of extensions: 247133235
Number of successful extensions: 955799
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 18463
Number of HSP's successfully gapped in prelim test: 10720
Number of HSP's that attempted gapping in prelim test: 766262
Number of HSP's gapped (non-prelim): 118874
length of query: 399
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 254
effective length of database: 8,957,035,862
effective search space: 2275087108948
effective search space used: 2275087108948
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)