Query 015870
Match_columns 399
No_of_seqs 172 out of 2205
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 01:39:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 4.5E-61 9.6E-66 458.5 43.3 373 24-397 1-377 (562)
2 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4E-50 8.6E-55 373.1 37.0 349 22-384 1-480 (481)
3 KOG0123 Polyadenylate-binding 100.0 2.6E-47 5.7E-52 335.2 30.0 359 24-397 2-362 (369)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.7E-46 1.2E-50 336.2 28.6 341 22-386 2-351 (352)
5 TIGR01648 hnRNP-R-Q heterogene 100.0 2.8E-40 6.2E-45 303.6 27.3 297 20-333 55-369 (578)
6 KOG0145 RNA-binding protein EL 100.0 8.6E-40 1.9E-44 258.0 25.5 315 19-385 37-359 (360)
7 TIGR01628 PABP-1234 polyadenyl 100.0 7.4E-39 1.6E-43 305.9 29.4 259 113-388 2-265 (562)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 2.8E-38 6E-43 290.5 28.6 282 74-387 18-310 (578)
9 KOG0117 Heterogeneous nuclear 100.0 2.2E-38 4.8E-43 268.7 25.4 254 18-287 78-337 (506)
10 KOG0117 Heterogeneous nuclear 100.0 4.9E-38 1.1E-42 266.6 25.7 282 73-391 42-338 (506)
11 KOG0127 Nucleolar protein fibr 100.0 2.4E-37 5.2E-42 268.5 26.5 344 23-366 5-516 (678)
12 TIGR01622 SF-CC1 splicing fact 100.0 5.6E-37 1.2E-41 286.8 30.5 342 18-385 84-449 (457)
13 TIGR01645 half-pint poly-U bin 100.0 3E-37 6.5E-42 283.8 24.4 173 18-190 102-284 (612)
14 KOG0144 RNA-binding protein CU 100.0 6.6E-37 1.4E-41 258.5 18.7 365 20-386 31-506 (510)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.8E-36 2.1E-40 276.9 26.2 262 111-384 2-351 (481)
16 TIGR01642 U2AF_lg U2 snRNP aux 100.0 7.8E-34 1.7E-38 269.4 29.0 256 18-280 170-501 (509)
17 KOG0127 Nucleolar protein fibr 100.0 5E-34 1.1E-38 247.9 23.9 276 112-387 6-381 (678)
18 TIGR01642 U2AF_lg U2 snRNP aux 100.0 7.9E-34 1.7E-38 269.3 25.1 269 109-383 173-501 (509)
19 KOG0148 Apoptosis-promoting RN 100.0 3.8E-34 8.2E-39 227.5 17.6 234 109-386 4-240 (321)
20 KOG0110 RNA-binding protein (R 100.0 6.1E-34 1.3E-38 255.4 16.8 332 18-386 222-695 (725)
21 KOG0148 Apoptosis-promoting RN 100.0 6.1E-31 1.3E-35 209.3 19.7 225 20-284 3-241 (321)
22 TIGR01659 sex-lethal sex-letha 100.0 9E-31 2E-35 229.8 22.0 170 18-189 102-274 (346)
23 KOG0123 Polyadenylate-binding 100.0 2.4E-30 5.2E-35 228.1 23.8 250 113-390 3-252 (369)
24 KOG1190 Polypyrimidine tract-b 100.0 2.4E-29 5.2E-34 211.4 21.8 360 7-383 12-490 (492)
25 TIGR01659 sex-lethal sex-letha 100.0 5.3E-29 1.1E-33 218.7 19.7 172 199-388 104-279 (346)
26 KOG0147 Transcriptional coacti 100.0 2.5E-29 5.3E-34 220.0 12.8 328 18-382 174-526 (549)
27 KOG4212 RNA-binding protein hn 100.0 6.4E-27 1.4E-31 198.5 22.4 237 24-273 45-286 (608)
28 TIGR01645 half-pint poly-U bin 100.0 3.5E-27 7.6E-32 217.6 17.3 179 200-385 105-285 (612)
29 KOG0124 Polypyrimidine tract-b 100.0 9E-27 2E-31 193.2 17.8 167 22-188 112-288 (544)
30 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 8.1E-26 1.7E-30 204.7 21.1 171 21-191 87-350 (352)
31 KOG0144 RNA-binding protein CU 99.9 1.6E-26 3.4E-31 196.0 11.8 173 201-390 33-212 (510)
32 KOG0110 RNA-binding protein (R 99.9 2.4E-25 5.3E-30 200.5 19.4 263 19-287 381-699 (725)
33 TIGR01622 SF-CC1 splicing fact 99.9 5E-25 1.1E-29 206.3 19.6 176 201-383 88-265 (457)
34 KOG4211 Splicing factor hnRNP- 99.9 1.2E-23 2.5E-28 182.1 19.5 353 19-380 6-505 (510)
35 KOG1456 Heterogeneous nuclear 99.9 4.7E-22 1E-26 165.8 27.9 353 17-384 25-491 (494)
36 KOG0131 Splicing factor 3b, su 99.9 2.3E-24 5E-29 162.0 11.5 172 20-192 6-179 (203)
37 KOG0145 RNA-binding protein EL 99.9 1.1E-23 2.4E-28 167.0 12.9 165 202-384 41-209 (360)
38 KOG0131 Splicing factor 3b, su 99.9 1.5E-23 3.2E-28 157.6 10.1 172 199-387 6-180 (203)
39 KOG0146 RNA-binding protein ET 99.9 5.7E-22 1.2E-26 158.0 12.8 189 201-389 18-370 (371)
40 KOG0109 RNA-binding protein LA 99.9 2.3E-22 5E-27 162.3 9.1 148 203-384 3-150 (346)
41 KOG0109 RNA-binding protein LA 99.9 7.1E-22 1.5E-26 159.5 10.2 151 24-193 3-153 (346)
42 KOG4211 Splicing factor hnRNP- 99.8 1.5E-19 3.2E-24 157.0 18.3 264 111-380 10-354 (510)
43 KOG4212 RNA-binding protein hn 99.8 7E-20 1.5E-24 156.1 13.9 248 111-382 44-292 (608)
44 KOG0124 Polypyrimidine tract-b 99.8 2.9E-19 6.3E-24 148.9 13.1 171 203-380 114-286 (544)
45 KOG4206 Spliceosomal protein s 99.8 3.8E-18 8.3E-23 134.2 15.7 158 21-185 7-217 (221)
46 KOG0105 Alternative splicing f 99.8 3E-18 6.4E-23 129.3 13.8 149 20-177 3-175 (241)
47 KOG1190 Polypyrimidine tract-b 99.8 5.2E-17 1.1E-21 137.6 22.1 254 16-280 143-490 (492)
48 KOG1365 RNA-binding protein Fu 99.8 3.9E-18 8.5E-23 143.1 14.8 290 18-388 55-366 (508)
49 KOG0146 RNA-binding protein ET 99.8 3.8E-18 8.3E-23 136.3 12.9 169 22-191 18-366 (371)
50 KOG0147 Transcriptional coacti 99.8 5.7E-19 1.2E-23 155.4 8.0 178 202-384 179-358 (549)
51 KOG4205 RNA-binding protein mu 99.8 1.7E-18 3.8E-23 147.4 10.3 170 22-193 5-179 (311)
52 KOG0120 Splicing factor U2AF, 99.8 1.6E-17 3.4E-22 148.5 15.3 257 17-280 169-491 (500)
53 PLN03134 glycine-rich RNA-bind 99.8 4.3E-18 9.3E-23 130.9 9.8 84 303-386 32-116 (144)
54 KOG0120 Splicing factor U2AF, 99.7 6.2E-18 1.3E-22 151.0 11.0 269 111-385 175-493 (500)
55 PLN03134 glycine-rich RNA-bind 99.7 3.9E-17 8.5E-22 125.5 12.4 87 18-104 29-115 (144)
56 KOG4206 Spliceosomal protein s 99.7 5E-17 1.1E-21 128.0 13.0 175 202-382 9-220 (221)
57 KOG4205 RNA-binding protein mu 99.7 1.2E-17 2.6E-22 142.3 8.2 175 201-389 5-181 (311)
58 KOG4307 RNA binding protein RB 99.7 9.2E-17 2E-21 144.7 13.1 174 13-188 301-512 (944)
59 KOG1457 RNA binding protein (c 99.7 6.2E-16 1.3E-20 120.6 12.9 154 21-177 32-273 (284)
60 PF00076 RRM_1: RNA recognitio 99.7 3.5E-16 7.6E-21 106.1 9.1 70 308-377 1-70 (70)
61 KOG0105 Alternative splicing f 99.7 2.4E-15 5.1E-20 113.8 12.3 162 202-372 6-176 (241)
62 KOG0122 Translation initiation 99.7 4.9E-16 1.1E-20 123.0 8.9 81 304-384 188-269 (270)
63 KOG1456 Heterogeneous nuclear 99.6 1.9E-14 4.1E-19 120.8 17.5 260 110-382 30-361 (494)
64 PF00076 RRM_1: RNA recognitio 99.6 1.1E-15 2.3E-20 103.8 8.5 70 26-96 1-70 (70)
65 PF14259 RRM_6: RNA recognitio 99.6 2.1E-15 4.5E-20 102.0 9.7 70 308-377 1-70 (70)
66 KOG0122 Translation initiation 99.6 4E-15 8.6E-20 117.9 10.3 84 20-103 186-269 (270)
67 KOG1548 Transcription elongati 99.6 8E-14 1.7E-18 116.2 16.9 170 17-190 128-352 (382)
68 PF14259 RRM_6: RNA recognitio 99.6 5.8E-15 1.3E-19 99.8 7.8 70 26-96 1-70 (70)
69 KOG1548 Transcription elongati 99.6 1.8E-13 3.8E-18 114.2 17.5 178 202-382 134-350 (382)
70 PLN03120 nucleic acid binding 99.6 1.1E-14 2.5E-19 119.4 9.9 76 305-383 4-79 (260)
71 KOG0125 Ataxin 2-binding prote 99.6 5.2E-15 1.1E-19 122.2 7.8 80 304-384 95-174 (376)
72 KOG0149 Predicted RNA-binding 99.6 6.2E-15 1.4E-19 116.5 7.7 80 21-101 10-89 (247)
73 KOG4207 Predicted splicing fac 99.6 3.2E-15 7E-20 115.2 5.9 80 304-383 12-92 (256)
74 KOG4207 Predicted splicing fac 99.6 7.2E-15 1.6E-19 113.3 7.6 89 16-104 6-94 (256)
75 KOG0106 Alternative splicing f 99.6 6.3E-15 1.4E-19 117.7 7.3 147 24-185 2-166 (216)
76 KOG0114 Predicted RNA-binding 99.6 3E-14 6.4E-19 97.1 8.8 84 303-388 16-99 (124)
77 KOG0107 Alternative splicing f 99.5 1.8E-14 4E-19 108.3 7.6 78 303-384 8-85 (195)
78 KOG1457 RNA binding protein (c 99.5 9.7E-14 2.1E-18 108.4 11.5 170 199-371 31-273 (284)
79 KOG0107 Alternative splicing f 99.5 3.6E-14 7.9E-19 106.7 7.6 78 21-103 8-85 (195)
80 KOG0114 Predicted RNA-binding 99.5 9.2E-14 2E-18 94.7 8.4 84 18-104 13-96 (124)
81 PLN03120 nucleic acid binding 99.5 9.3E-14 2E-18 114.1 10.0 76 23-102 4-79 (260)
82 KOG0106 Alternative splicing f 99.5 1.2E-14 2.5E-19 116.1 4.1 166 204-383 3-170 (216)
83 smart00362 RRM_2 RNA recogniti 99.5 2.3E-13 4.9E-18 92.7 9.1 72 307-379 1-72 (72)
84 KOG0121 Nuclear cap-binding pr 99.5 1.1E-13 2.3E-18 98.4 7.0 84 19-102 32-115 (153)
85 PLN03213 repressor of silencin 99.5 2.1E-13 4.5E-18 118.8 10.1 84 302-388 7-92 (759)
86 KOG0130 RNA-binding protein RB 99.5 9E-14 2E-18 99.6 6.3 84 303-386 70-154 (170)
87 KOG0111 Cyclophilin-type pepti 99.5 3.3E-14 7.2E-19 110.7 4.1 83 304-386 9-92 (298)
88 KOG0113 U1 small nuclear ribon 99.5 2.6E-13 5.6E-18 110.9 9.1 83 302-384 98-181 (335)
89 PLN03121 nucleic acid binding 99.5 3.7E-13 8E-18 108.6 9.9 76 304-382 4-79 (243)
90 KOG1365 RNA-binding protein Fu 99.5 4.2E-13 9.1E-18 113.2 10.6 167 21-189 159-361 (508)
91 PLN03121 nucleic acid binding 99.5 4.6E-13 9.9E-18 108.1 10.1 78 21-102 3-80 (243)
92 KOG0125 Ataxin 2-binding prote 99.5 3E-13 6.6E-18 111.9 8.9 82 20-103 93-174 (376)
93 KOG0149 Predicted RNA-binding 99.5 8.4E-14 1.8E-18 110.1 5.2 77 306-383 13-90 (247)
94 KOG0130 RNA-binding protein RB 99.4 3.1E-13 6.6E-18 96.9 7.5 89 14-102 63-151 (170)
95 smart00362 RRM_2 RNA recogniti 99.4 5.2E-13 1.1E-17 90.9 8.6 71 25-97 1-71 (72)
96 PF13893 RRM_5: RNA recognitio 99.4 7E-13 1.5E-17 84.9 8.4 56 322-381 1-56 (56)
97 COG0724 RNA-binding proteins ( 99.4 1.5E-12 3.3E-17 115.0 13.4 124 23-146 115-260 (306)
98 KOG0121 Nuclear cap-binding pr 99.4 4E-13 8.6E-18 95.5 6.9 80 303-382 34-114 (153)
99 cd00590 RRM RRM (RNA recogniti 99.4 1.4E-12 3E-17 89.3 9.6 74 307-380 1-74 (74)
100 smart00360 RRM RNA recognition 99.4 1.1E-12 2.3E-17 89.0 8.4 70 28-97 1-70 (71)
101 smart00360 RRM RNA recognition 99.4 9.1E-13 2E-17 89.4 7.9 70 310-379 1-71 (71)
102 KOG0126 Predicted RNA-binding 99.4 1.9E-14 4.1E-19 108.7 -0.6 84 18-101 30-113 (219)
103 KOG0126 Predicted RNA-binding 99.4 5E-14 1.1E-18 106.5 1.1 77 304-380 34-111 (219)
104 KOG0113 U1 small nuclear ribon 99.4 1.8E-12 3.8E-17 106.1 9.8 81 20-100 98-178 (335)
105 PLN03213 repressor of silencin 99.4 2.1E-12 4.6E-17 112.7 9.4 79 20-102 7-87 (759)
106 KOG0108 mRNA cleavage and poly 99.4 1.7E-12 3.7E-17 116.1 8.6 85 306-390 19-104 (435)
107 cd00590 RRM RRM (RNA recogniti 99.4 5.5E-12 1.2E-16 86.3 9.3 74 25-99 1-74 (74)
108 KOG0128 RNA-binding protein SA 99.4 4.4E-15 9.5E-20 137.6 -8.9 322 24-383 480-814 (881)
109 smart00361 RRM_1 RNA recogniti 99.3 5.3E-12 1.1E-16 84.7 7.5 61 319-379 2-70 (70)
110 KOG0111 Cyclophilin-type pepti 99.3 2E-12 4.3E-17 100.9 3.7 84 20-103 7-90 (298)
111 KOG0108 mRNA cleavage and poly 99.3 1.8E-11 4E-16 109.5 9.4 81 24-104 19-99 (435)
112 PF13893 RRM_5: RNA recognitio 99.2 2.7E-11 5.9E-16 77.5 6.8 56 40-100 1-56 (56)
113 KOG4660 Protein Mei2, essentia 99.2 2.4E-11 5.2E-16 108.2 7.9 153 20-184 72-244 (549)
114 smart00361 RRM_1 RNA recogniti 99.2 5.9E-11 1.3E-15 79.6 7.3 61 37-97 2-69 (70)
115 KOG4307 RNA binding protein RB 99.2 1.8E-10 3.9E-15 104.9 12.0 180 205-386 314-516 (944)
116 KOG0415 Predicted peptidyl pro 99.2 4.8E-11 1E-15 100.0 7.1 87 300-386 234-321 (479)
117 COG0724 RNA-binding proteins ( 99.2 2.6E-10 5.7E-15 100.7 11.4 164 202-365 115-286 (306)
118 KOG0132 RNA polymerase II C-te 99.1 1.3E-10 2.9E-15 107.1 7.2 81 303-388 419-499 (894)
119 KOG0129 Predicted RNA-binding 99.1 2.9E-09 6.2E-14 94.4 15.0 154 18-171 254-432 (520)
120 KOG0153 Predicted RNA-binding 99.1 2E-10 4.2E-15 96.4 7.3 75 304-383 227-302 (377)
121 KOG4454 RNA binding protein (R 99.0 8E-11 1.7E-15 92.1 2.4 152 18-182 4-155 (267)
122 KOG0128 RNA-binding protein SA 99.0 2.7E-11 5.8E-16 113.0 -1.0 237 20-280 568-814 (881)
123 KOG0415 Predicted peptidyl pro 99.0 5E-10 1.1E-14 94.0 6.6 89 14-102 230-318 (479)
124 KOG4208 Nucleolar RNA-binding 99.0 1.8E-09 4E-14 84.2 7.2 82 303-384 47-130 (214)
125 KOG0129 Predicted RNA-binding 98.9 6.1E-09 1.3E-13 92.4 10.3 162 201-365 258-432 (520)
126 KOG4208 Nucleolar RNA-binding 98.9 4E-09 8.6E-14 82.3 8.0 88 16-103 42-130 (214)
127 KOG0132 RNA polymerase II C-te 98.9 2.5E-09 5.4E-14 98.9 7.7 106 22-133 420-528 (894)
128 KOG0533 RRM motif-containing p 98.9 3.6E-09 7.9E-14 87.0 7.9 81 304-384 82-162 (243)
129 KOG0153 Predicted RNA-binding 98.9 4.5E-09 9.7E-14 88.4 8.2 84 13-102 218-302 (377)
130 PF04059 RRM_2: RNA recognitio 98.9 1.3E-08 2.7E-13 71.4 9.1 77 24-100 2-84 (97)
131 KOG4661 Hsp27-ERE-TATA-binding 98.9 3.9E-09 8.5E-14 94.2 6.9 81 303-383 403-484 (940)
132 KOG4454 RNA binding protein (R 98.8 1.1E-09 2.3E-14 85.9 1.4 169 200-396 7-186 (267)
133 PF04059 RRM_2: RNA recognitio 98.8 5.6E-08 1.2E-12 68.1 8.8 78 306-383 2-86 (97)
134 KOG0533 RRM motif-containing p 98.8 3.6E-08 7.8E-13 81.2 9.1 84 19-103 79-162 (243)
135 KOG0112 Large RNA-binding prot 98.8 5.8E-09 1.3E-13 98.2 4.3 159 19-187 368-528 (975)
136 KOG0112 Large RNA-binding prot 98.7 5.7E-09 1.2E-13 98.2 3.6 159 203-386 373-533 (975)
137 KOG4661 Hsp27-ERE-TATA-binding 98.7 2.8E-08 6E-13 88.9 7.3 84 21-104 403-486 (940)
138 KOG4210 Nuclear localization s 98.7 7.9E-09 1.7E-13 88.6 2.9 177 202-387 88-267 (285)
139 PF11608 Limkain-b1: Limkain b 98.7 1.4E-07 3E-12 62.5 7.8 71 24-104 3-78 (90)
140 KOG0116 RasGAP SH3 binding pro 98.7 6.2E-08 1.3E-12 86.6 7.9 81 20-101 285-365 (419)
141 KOG0226 RNA-binding proteins [ 98.6 2.6E-08 5.7E-13 80.2 3.2 154 220-385 117-271 (290)
142 KOG4660 Protein Mei2, essentia 98.6 2.5E-08 5.4E-13 89.4 2.5 72 302-377 72-143 (549)
143 KOG4210 Nuclear localization s 98.6 1E-07 2.2E-12 81.9 5.8 169 21-190 86-264 (285)
144 KOG0116 RasGAP SH3 binding pro 98.5 2.1E-07 4.6E-12 83.3 6.7 82 304-386 287-369 (419)
145 KOG0151 Predicted splicing reg 98.5 3.8E-07 8.2E-12 84.0 8.1 83 19-101 170-255 (877)
146 PF11608 Limkain-b1: Limkain b 98.5 8.2E-07 1.8E-11 58.9 6.9 70 306-384 3-77 (90)
147 KOG0226 RNA-binding proteins [ 98.5 3.4E-07 7.4E-12 73.9 6.1 154 129-282 117-271 (290)
148 KOG4676 Splicing factor, argin 98.5 6.9E-08 1.5E-12 82.5 2.0 215 113-385 9-227 (479)
149 KOG4209 Splicing factor RNPS1, 98.4 5.9E-07 1.3E-11 74.5 7.1 82 301-383 97-179 (231)
150 KOG0151 Predicted splicing reg 98.4 9.6E-07 2.1E-11 81.5 6.8 82 302-383 171-256 (877)
151 KOG4209 Splicing factor RNPS1, 98.3 1E-06 2.2E-11 73.1 5.9 83 18-101 96-178 (231)
152 PF08777 RRM_3: RNA binding mo 98.3 2E-06 4.4E-11 62.0 6.6 77 306-387 2-83 (105)
153 KOG2193 IGF-II mRNA-binding pr 98.3 1.5E-07 3.2E-12 81.3 -0.4 153 24-189 2-156 (584)
154 KOG2193 IGF-II mRNA-binding pr 98.2 2.7E-07 5.9E-12 79.8 -0.6 157 112-283 2-159 (584)
155 KOG1995 Conserved Zn-finger pr 98.1 5.8E-06 1.3E-10 70.7 6.4 86 19-104 62-155 (351)
156 PF08777 RRM_3: RNA binding mo 98.1 1E-05 2.2E-10 58.4 5.8 60 23-88 1-60 (105)
157 PF14605 Nup35_RRM_2: Nup53/35 98.0 1.8E-05 3.8E-10 49.1 5.1 53 23-82 1-53 (53)
158 KOG4676 Splicing factor, argin 97.9 1.3E-05 2.7E-10 69.1 4.4 203 25-269 9-214 (479)
159 KOG1995 Conserved Zn-finger pr 97.8 1.3E-05 2.8E-10 68.6 3.5 82 304-385 65-155 (351)
160 COG5175 MOT2 Transcriptional r 97.8 5.5E-05 1.2E-09 63.9 6.6 84 18-101 109-201 (480)
161 PF08952 DUF1866: Domain of un 97.8 0.00021 4.5E-09 53.8 8.2 78 301-386 23-109 (146)
162 PF14605 Nup35_RRM_2: Nup53/35 97.7 9.2E-05 2E-09 45.9 4.7 52 306-363 2-53 (53)
163 KOG2314 Translation initiation 97.7 0.00014 3.1E-09 65.8 7.6 76 305-380 58-140 (698)
164 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00014 3.1E-09 51.5 5.9 72 21-96 4-84 (100)
165 COG5175 MOT2 Transcriptional r 97.7 0.00013 2.8E-09 61.7 6.6 76 307-382 116-201 (480)
166 KOG2202 U2 snRNP splicing fact 97.6 2.9E-05 6.4E-10 63.3 1.6 63 320-382 83-146 (260)
167 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00041 8.9E-09 49.2 6.9 78 304-383 5-91 (100)
168 KOG4849 mRNA cleavage factor I 97.4 0.00024 5.2E-09 60.4 5.1 80 18-97 75-156 (498)
169 KOG4849 mRNA cleavage factor I 97.4 0.00027 5.8E-09 60.1 4.9 77 306-382 81-161 (498)
170 KOG3152 TBP-binding protein, a 97.4 0.00021 4.6E-09 58.2 4.1 74 22-95 73-158 (278)
171 KOG0115 RNA-binding protein p5 97.4 0.00072 1.6E-08 55.3 6.9 89 76-173 5-93 (275)
172 KOG0115 RNA-binding protein p5 97.3 0.00071 1.5E-08 55.4 6.6 89 254-367 5-93 (275)
173 KOG1855 Predicted RNA-binding 97.3 0.00021 4.5E-09 62.6 3.2 67 303-369 229-309 (484)
174 KOG1855 Predicted RNA-binding 97.2 0.00033 7.1E-09 61.5 4.0 70 19-88 227-309 (484)
175 PF15023 DUF4523: Protein of u 97.2 0.0029 6.3E-08 46.9 8.0 78 17-102 80-161 (166)
176 KOG1996 mRNA splicing factor [ 97.2 0.00099 2.2E-08 55.5 6.1 82 300-382 276-365 (378)
177 KOG2314 Translation initiation 97.1 0.0021 4.6E-08 58.6 7.5 78 21-99 56-140 (698)
178 KOG2416 Acinus (induces apopto 97.1 0.0006 1.3E-08 62.4 4.0 83 301-388 440-526 (718)
179 KOG3152 TBP-binding protein, a 97.0 0.00034 7.3E-09 57.1 2.1 72 304-375 73-157 (278)
180 KOG2135 Proteins containing th 97.0 0.00048 1E-08 61.2 3.0 81 17-104 366-447 (526)
181 PF08952 DUF1866: Domain of un 97.0 0.0025 5.4E-08 48.1 5.8 75 20-103 24-107 (146)
182 KOG2202 U2 snRNP splicing fact 97.0 0.00047 1E-08 56.5 2.1 72 217-288 83-155 (260)
183 KOG1996 mRNA splicing factor [ 96.9 0.0029 6.2E-08 52.8 6.7 65 38-102 301-366 (378)
184 PF08675 RNA_bind: RNA binding 96.9 0.0054 1.2E-07 41.1 6.2 58 20-86 6-63 (87)
185 PF08675 RNA_bind: RNA binding 96.9 0.0069 1.5E-07 40.6 6.6 58 304-368 7-64 (87)
186 PF10309 DUF2414: Protein of u 96.8 0.0074 1.6E-07 38.4 6.4 55 305-366 5-62 (62)
187 PF07576 BRAP2: BRCA1-associat 96.7 0.023 4.9E-07 41.3 9.3 74 17-92 7-81 (110)
188 PF10309 DUF2414: Protein of u 96.7 0.013 2.8E-07 37.2 6.8 54 23-85 5-62 (62)
189 PF15023 DUF4523: Protein of u 96.5 0.011 2.3E-07 44.0 6.2 74 301-381 82-159 (166)
190 KOG2416 Acinus (induces apopto 96.4 0.0035 7.6E-08 57.6 4.0 84 12-101 433-520 (718)
191 PF03467 Smg4_UPF3: Smg-4/UPF3 96.4 0.0034 7.4E-08 50.2 3.5 73 20-92 4-82 (176)
192 KOG2591 c-Mpl binding protein, 96.4 0.013 2.8E-07 53.5 7.2 71 304-380 174-248 (684)
193 KOG2135 Proteins containing th 96.1 0.0031 6.8E-08 56.3 1.9 72 306-383 373-445 (526)
194 PF04847 Calcipressin: Calcipr 95.9 0.027 5.8E-07 45.2 6.4 62 318-384 8-71 (184)
195 KOG2591 c-Mpl binding protein, 95.5 0.043 9.3E-07 50.3 6.5 72 20-98 172-247 (684)
196 KOG2068 MOT2 transcription fac 95.4 0.0052 1.1E-07 52.7 0.8 79 307-385 79-164 (327)
197 KOG4285 Mitotic phosphoprotein 95.4 0.087 1.9E-06 44.6 7.5 65 23-95 197-261 (350)
198 KOG4574 RNA-binding protein (c 95.3 0.011 2.3E-07 56.9 2.3 75 309-388 302-378 (1007)
199 KOG0804 Cytoplasmic Zn-finger 95.3 0.087 1.9E-06 47.2 7.6 71 20-92 71-142 (493)
200 PF04847 Calcipressin: Calcipr 95.0 0.055 1.2E-06 43.4 5.2 59 37-101 9-69 (184)
201 PF10567 Nab6_mRNP_bdg: RNA-re 95.0 0.91 2E-05 38.6 12.3 181 201-382 14-230 (309)
202 PF03880 DbpA: DbpA RNA bindin 94.9 0.13 2.7E-06 34.6 6.1 58 316-381 12-74 (74)
203 PF03467 Smg4_UPF3: Smg-4/UPF3 94.8 0.078 1.7E-06 42.4 5.8 79 304-382 6-96 (176)
204 PF07576 BRAP2: BRCA1-associat 94.8 0.31 6.7E-06 35.5 8.3 65 307-372 15-80 (110)
205 PF10567 Nab6_mRNP_bdg: RNA-re 94.6 1.5 3.2E-05 37.5 12.6 158 16-173 8-212 (309)
206 KOG2068 MOT2 transcription fac 94.5 0.023 5E-07 48.9 2.0 81 20-101 74-161 (327)
207 KOG0804 Cytoplasmic Zn-finger 94.2 0.15 3.3E-06 45.7 6.5 67 305-372 74-141 (493)
208 KOG2318 Uncharacterized conser 93.8 0.21 4.6E-06 46.3 6.8 78 302-379 171-301 (650)
209 PF11767 SET_assoc: Histone ly 93.8 0.41 8.9E-06 31.1 6.2 54 35-97 12-65 (66)
210 KOG4574 RNA-binding protein (c 93.2 0.074 1.6E-06 51.4 3.0 72 27-104 302-375 (1007)
211 PF07292 NID: Nmi/IFP 35 domai 92.8 0.14 3E-06 35.3 3.2 66 68-133 1-74 (88)
212 KOG4285 Mitotic phosphoprotein 92.4 0.27 5.8E-06 41.7 4.9 63 307-376 199-261 (350)
213 PF03880 DbpA: DbpA RNA bindin 92.0 0.85 1.9E-05 30.5 6.3 58 34-100 12-74 (74)
214 PF07292 NID: Nmi/IFP 35 domai 91.1 0.055 1.2E-06 37.3 -0.3 73 246-327 1-74 (88)
215 PF11767 SET_assoc: Histone ly 86.2 5.3 0.00012 26.0 6.3 55 316-378 11-65 (66)
216 KOG2253 U1 snRNP complex, subu 86.2 0.42 9.1E-06 45.3 1.8 73 301-381 36-108 (668)
217 KOG2318 Uncharacterized conser 82.9 8.8 0.00019 36.2 8.5 87 17-103 168-308 (650)
218 KOG4019 Calcineurin-mediated s 82.3 1.3 2.7E-05 34.9 2.6 73 306-383 11-89 (193)
219 PF14111 DUF4283: Domain of un 81.7 1.7 3.8E-05 33.8 3.4 115 26-146 18-140 (153)
220 KOG4410 5-formyltetrahydrofola 80.9 3.6 7.9E-05 34.8 4.9 49 22-76 329-378 (396)
221 KOG2253 U1 snRNP complex, subu 79.3 2.8 6E-05 40.1 4.2 74 17-99 34-107 (668)
222 PF07530 PRE_C2HC: Associated 74.4 5.4 0.00012 26.2 3.4 63 38-103 2-65 (68)
223 PRK14548 50S ribosomal protein 73.3 10 0.00022 26.1 4.6 52 312-365 27-80 (84)
224 PRK14548 50S ribosomal protein 71.1 19 0.00041 24.8 5.5 57 26-85 23-81 (84)
225 TIGR03636 L23_arch archaeal ri 70.2 22 0.00047 24.0 5.6 58 25-85 15-74 (77)
226 PF03468 XS: XS domain; Inter 70.0 6.7 0.00015 28.9 3.5 51 306-358 9-68 (116)
227 smart00596 PRE_C2HC PRE_C2HC d 68.5 9.4 0.0002 24.9 3.4 63 38-103 2-65 (69)
228 TIGR03636 L23_arch archaeal ri 68.5 21 0.00045 24.1 5.2 54 310-365 18-73 (77)
229 KOG1295 Nonsense-mediated deca 68.5 5.9 0.00013 35.3 3.4 71 21-91 5-78 (376)
230 KOG4483 Uncharacterized conser 66.4 15 0.00032 33.0 5.3 58 20-84 388-446 (528)
231 KOG4483 Uncharacterized conser 64.8 16 0.00035 32.8 5.2 64 305-375 391-455 (528)
232 KOG4410 5-formyltetrahydrofola 63.8 8.6 0.00019 32.7 3.3 48 305-357 330-378 (396)
233 KOG4019 Calcineurin-mediated s 63.6 6.6 0.00014 31.0 2.5 74 23-102 10-89 (193)
234 PF03468 XS: XS domain; Inter 63.5 11 0.00025 27.7 3.6 56 25-83 10-75 (116)
235 PF14111 DUF4283: Domain of un 60.5 8.1 0.00018 30.0 2.6 85 152-237 55-140 (153)
236 PF15513 DUF4651: Domain of un 57.9 22 0.00047 22.7 3.5 21 320-340 9-29 (62)
237 KOG2295 C2H2 Zn-finger protein 54.8 2 4.4E-05 40.0 -1.9 77 19-95 227-303 (648)
238 KOG4213 RNA-binding protein La 51.8 21 0.00045 28.3 3.4 69 24-97 112-181 (205)
239 COG5638 Uncharacterized conser 50.3 40 0.00086 30.5 5.3 73 302-374 143-286 (622)
240 TIGR02542 B_forsyth_147 Bacter 49.1 71 0.0015 23.2 5.4 105 30-162 10-129 (145)
241 KOG4365 Uncharacterized conser 47.4 3.9 8.4E-05 37.0 -1.3 80 308-388 6-86 (572)
242 PF15513 DUF4651: Domain of un 45.7 57 0.0012 20.9 4.0 22 217-238 9-30 (62)
243 PF02714 DUF221: Domain of unk 44.5 44 0.00095 29.9 5.0 56 68-133 1-56 (325)
244 KOG4213 RNA-binding protein La 42.7 33 0.00071 27.2 3.2 70 306-380 112-183 (205)
245 KOG3424 40S ribosomal protein 42.0 1.1E+02 0.0023 22.5 5.4 46 35-81 35-85 (132)
246 PF07530 PRE_C2HC: Associated 41.3 32 0.0007 22.5 2.6 62 320-384 2-65 (68)
247 PF12829 Mhr1: Transcriptional 40.5 83 0.0018 22.0 4.6 54 30-86 19-72 (91)
248 PRK10905 cell division protein 39.4 1E+02 0.0022 27.3 5.9 58 305-367 247-307 (328)
249 KOG2891 Surface glycoprotein [ 38.8 40 0.00087 28.6 3.4 89 297-385 141-269 (445)
250 KOG2295 C2H2 Zn-finger protein 38.1 5.7 0.00012 37.2 -1.7 71 304-374 230-301 (648)
251 PRK10629 EnvZ/OmpR regulon mod 37.9 1.8E+02 0.0038 22.0 7.9 73 21-101 33-109 (127)
252 PRK11901 hypothetical protein; 37.3 1.4E+02 0.003 26.6 6.4 65 18-86 240-305 (327)
253 PF11823 DUF3343: Protein of u 36.1 54 0.0012 21.7 3.2 24 348-371 3-26 (73)
254 COG5193 LHP1 La protein, small 34.3 22 0.00048 32.1 1.3 59 306-364 175-244 (438)
255 KOG4008 rRNA processing protei 33.4 39 0.00085 28.1 2.5 36 18-53 35-70 (261)
256 PRK11230 glycolate oxidase sub 32.4 1.7E+02 0.0037 28.2 7.0 49 319-367 203-255 (499)
257 PTZ00191 60S ribosomal protein 32.1 1.4E+02 0.003 23.0 5.1 49 313-363 89-139 (145)
258 PRK11901 hypothetical protein; 31.2 1.2E+02 0.0027 26.8 5.3 60 304-368 244-306 (327)
259 PF09902 DUF2129: Uncharacteri 31.1 1.4E+02 0.0029 19.9 4.3 39 43-90 16-54 (71)
260 PF14861 Antimicrobial21: Plan 30.4 20 0.00043 19.3 0.3 11 389-399 18-28 (31)
261 KOG1295 Nonsense-mediated deca 29.9 87 0.0019 28.3 4.2 66 306-371 8-77 (376)
262 PRK13259 regulatory protein Sp 29.1 85 0.0018 22.1 3.2 25 331-355 2-27 (94)
263 PF14893 PNMA: PNMA 29.0 41 0.00089 30.1 2.1 27 20-46 15-41 (331)
264 PTZ00191 60S ribosomal protein 28.6 2.1E+02 0.0046 22.1 5.5 56 26-84 84-141 (145)
265 COG2088 SpoVG Uncharacterized 27.9 89 0.0019 21.5 3.0 25 331-355 2-27 (95)
266 PF08156 NOP5NT: NOP5NT (NUC12 27.9 25 0.00055 22.9 0.5 39 320-367 27-65 (67)
267 PF09341 Pcc1: Transcription f 27.6 1.1E+02 0.0024 20.3 3.6 39 346-384 2-52 (76)
268 PRK10905 cell division protein 26.9 1.4E+02 0.0031 26.3 4.9 63 20-86 244-307 (328)
269 PF00403 HMA: Heavy-metal-asso 25.2 1.8E+02 0.0039 18.1 5.9 54 307-365 1-58 (62)
270 cd04905 ACT_CM-PDT C-terminal 24.5 2.2E+02 0.0048 18.9 5.2 51 318-368 14-68 (80)
271 PRK02302 hypothetical protein; 24.2 2E+02 0.0044 20.0 4.3 55 20-90 6-60 (89)
272 PF04026 SpoVG: SpoVG; InterP 23.7 1.3E+02 0.0029 20.6 3.4 25 331-355 2-27 (84)
273 COG0030 KsgA Dimethyladenosine 23.5 1.1E+02 0.0025 26.3 3.7 28 23-50 95-122 (259)
274 PF14893 PNMA: PNMA 22.8 68 0.0015 28.7 2.4 23 305-327 18-40 (331)
275 KOG2187 tRNA uracil-5-methyltr 22.0 73 0.0016 30.3 2.4 41 345-385 62-102 (534)
276 PRK02886 hypothetical protein; 21.9 2.4E+02 0.0053 19.6 4.3 55 20-90 4-58 (87)
277 PRK01178 rps24e 30S ribosomal 21.9 3.1E+02 0.0067 19.6 5.1 47 34-81 30-81 (99)
278 PF13046 DUF3906: Protein of u 21.2 1.3E+02 0.0029 19.3 2.7 32 37-70 32-63 (64)
279 PRK10629 EnvZ/OmpR regulon mod 20.8 3.8E+02 0.0082 20.2 7.7 71 305-382 35-109 (127)
280 COG0445 GidA Flavin-dependent 20.5 3.4E+02 0.0074 26.4 6.4 79 67-145 238-335 (621)
281 KOG2891 Surface glycoprotein [ 20.4 83 0.0018 26.9 2.2 33 23-55 149-193 (445)
282 PHA01632 hypothetical protein 20.0 1.2E+02 0.0026 18.7 2.2 22 25-46 18-39 (64)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.5e-61 Score=458.49 Aligned_cols=373 Identities=64% Similarity=1.029 Sum_probs=336.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccCC
Q 015870 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (399)
.+|||+|||.++|+++|+++|++||+|.+|.+.++..+++++|||||+|.+.++|.+|+..+++..+.|+.|+|.|+..+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceee
Q 015870 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183 (399)
Q Consensus 104 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 183 (399)
+........+|+|+|||.++++++|+++|+.||.|..+.+..+..+.++|+|||+|.+.++|..|++.+++..+.++.+.
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 77777778899999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred eecccccccchhhcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 015870 184 VGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263 (399)
Q Consensus 184 v~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l 263 (399)
+.......... .......++++|+|||.++++++|.++|+.||.|..+.+..+..+.++|+|||.|.+.++|..|+..+
T Consensus 161 v~~~~~~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 161 VGRFIKKHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred Eeccccccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 87655443332 12334567899999999999999999999999999999999888889999999999999999999999
Q ss_pred CCCccC----CceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEee
Q 015870 264 NGKKFD----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339 (399)
Q Consensus 264 ~g~~~~----~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~ 339 (399)
++..+. |+.+.+..+..........................+.+|||+||++.+++++|+++|++||.|.+++++.
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred CCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 999999 9999999887776655444443333333334456678899999999999999999999999999999999
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecHHHHHHhhhhhhc
Q 015870 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397 (399)
Q Consensus 340 ~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~ 397 (399)
+.+|+++|||||+|.+.++|.+|+..|||..++|++|.|.+|..+.+++...+.+++|
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~~~~~q 377 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQDQFMQ 377 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHHHHHHH
Confidence 9899999999999999999999999999999999999999999999998877777665
No 2
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4e-50 Score=373.07 Aligned_cols=349 Identities=19% Similarity=0.261 Sum_probs=278.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCCCCCcccEEee
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML--NFTPLNGKPIRVMY 99 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l--~~~~~~g~~i~v~~ 99 (399)
++++|+|+|||+++++++|+++|++||+|.++.++.++ |+|||+|.+.++|++|+..+ ++..+.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 57999999999999999999999999999999998643 59999999999999999875 56789999999999
Q ss_pred ccCCccccc----------CCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHH
Q 015870 100 SHRDPSLRK----------SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169 (399)
Q Consensus 100 ~~~~~~~~~----------~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~ 169 (399)
+........ .....|+|.||++.+|+++|+++|+.||.|..+.+..+. ..++|||+|.+.++|.+|+
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAK 151 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHH
Confidence 864321111 112368999999999999999999999999999987753 2368999999999999999
Q ss_pred HHhcCCccCC--ceeeeeccccccc--------------------c-----------hh---------------------
Q 015870 170 EKLNGMLLND--KQVYVGHFLRKQE--------------------R-----------DT--------------------- 195 (399)
Q Consensus 170 ~~l~~~~~~~--~~~~v~~~~~~~~--------------------~-----------~~--------------------- 195 (399)
+.|+|..+.+ +.+.+.+...... . ..
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 231 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGP 231 (481)
T ss_pred HHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCC
Confidence 9999999864 3555544332100 0 00
Q ss_pred -------------------------------------hcccCCcceEEeecCCc-CccHHHHHHHhcccCCeeEEEEEEC
Q 015870 196 -------------------------------------EINKSKFTNVYVKNLSE-STTEEDLQKSFGEYGTITSAVVMRD 237 (399)
Q Consensus 196 -------------------------------------~~~~~~~~~l~i~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~ 237 (399)
.....+..+|+|+||++ .+++++|.++|+.||.|..+.+..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~ 311 (481)
T TIGR01649 232 LAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN 311 (481)
T ss_pred CCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 00012456899999998 6999999999999999999998875
Q ss_pred CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHHH---------HHHHH-h---hH------H
Q 015870 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK---------HQFEQ-N---MK------E 298 (399)
Q Consensus 238 ~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~~---------~~~~~-~---~~------~ 298 (399)
. +|+|||+|.+.++|..|+..|+|..+.|+.|.|.++........... ..... . .. .
T Consensus 312 ~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~ 387 (481)
T TIGR01649 312 K----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANK 387 (481)
T ss_pred C----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccc
Confidence 2 57999999999999999999999999999999998754321111000 00000 0 00 0
Q ss_pred hhhccCCceEEEecCCCcCCHHHHHHhhcCcCC--ceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee-
Q 015870 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGS--ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP- 375 (399)
Q Consensus 299 ~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~--v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~- 375 (399)
....+++.+|+|+|||.++++++|+++|+.||. |..+++....++ .+++|||+|.+.++|..|+..||+..+.|+.
T Consensus 388 ~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~ 466 (481)
T TIGR01649 388 NNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNG 466 (481)
T ss_pred cccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCC
Confidence 011356789999999999999999999999998 888888765544 4789999999999999999999999999985
Q ss_pred -----EEEEEeeec
Q 015870 376 -----LYVALAQRK 384 (399)
Q Consensus 376 -----l~v~~a~~~ 384 (399)
|+|+|++++
T Consensus 467 ~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 467 SAPYHLKVSFSTSR 480 (481)
T ss_pred CccceEEEEeccCC
Confidence 999999875
No 3
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-47 Score=335.20 Aligned_cols=359 Identities=65% Similarity=1.027 Sum_probs=326.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccCC
Q 015870 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (399)
..|||+ +++|+..|+++|+.+|+|+++.+.++. + +-|||||.|.++++|.+|+..+|...+.|++++|+|+.++
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468888 889999999999999999999999997 6 8899999999999999999999999999999999999988
Q ss_pred cccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceee
Q 015870 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183 (399)
Q Consensus 104 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 183 (399)
+.. ++|.||++.++...|.+.|+.||.|.+|++..+.+| ++|| ||+|.++++|.+|+..++|..+.++.+.
T Consensus 76 ~~~-------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~ 146 (369)
T KOG0123|consen 76 PSL-------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIY 146 (369)
T ss_pred Cce-------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeE
Confidence 776 999999999999999999999999999999999888 8999 9999999999999999999999999999
Q ss_pred eecccccccchhhc--ccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHH
Q 015870 184 VGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261 (399)
Q Consensus 184 v~~~~~~~~~~~~~--~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~ 261 (399)
+.....+..+.... .....+.+++.+++...+.+.|...|..+|.+..+.+..+..+.+++++|+.|.+.++|..|+.
T Consensus 147 vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~ 226 (369)
T KOG0123|consen 147 VGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVE 226 (369)
T ss_pred EeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHH
Confidence 98777655543222 2344567899999999999999999999999999999999888899999999999999999999
Q ss_pred HhCCCccCCceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC
Q 015870 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341 (399)
Q Consensus 262 ~l~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~ 341 (399)
.+++..+.+..+.+..+.............................|+|.|++..++.+.|+.+|+.||.|.++++..+.
T Consensus 227 ~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 227 TLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred hccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 99999999999999998886666666655555555555556778899999999999999999999999999999999999
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecHHHHHHhhhhhhc
Q 015870 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397 (399)
Q Consensus 342 ~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~ 397 (399)
.|+++|++||.|.+.++|..|+..+|+..+.+++|.|.++..+..++.++|....|
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~~~~~~~~~ 362 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRARLQAVFGA 362 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchhhhhhhcce
Confidence 99999999999999999999999999999999999999999888888777776554
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=5.7e-46 Score=336.17 Aligned_cols=341 Identities=26% Similarity=0.420 Sum_probs=233.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeecc
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (399)
+.++|||+|||.++++++|+++|+.||+|.+|.++.++.+|+++|||||+|.+.++|++|+..|++..+.|++|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhcCCccCCc
Q 015870 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180 (399)
Q Consensus 102 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~ 180 (399)
+... .....+|||+|||+.+++++|+++|+.||.+..+.+..+ ..+.++|+|||+|.+.++|..|++.|++..+.+.
T Consensus 82 ~~~~--~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSD--SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred cccc--ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 5432 234568999999999999999999999999999998887 4678899999999999999999999999988774
Q ss_pred --eeeeecccccccchhhcccCCcce-----EEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCH
Q 015870 181 --QVYVGHFLRKQERDTEINKSKFTN-----VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253 (399)
Q Consensus 181 --~~~v~~~~~~~~~~~~~~~~~~~~-----l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~ 253 (399)
.+.+.+...+.............. .....++..+.. ...+.+.... +-......
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~------------~~~~~~~~ 220 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTA-------AGIGPMHHAA------------ARFRPSAG 220 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccc-------cCCCCccCcc------------cccccCcc
Confidence 455555443321110000000000 000000000000 0000000000 00000000
Q ss_pred HHHHHHHHHhCCCccCCceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCce
Q 015870 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333 (399)
Q Consensus 254 ~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~ 333 (399)
..+..................-...++ ...... ...............+.+|||+|||+.+++++|+++|++||.|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~ 297 (352)
T TIGR01661 221 DFTAVLAHQQQQHAVAQQHAAQRASPP-ATDGQT--AGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQ 297 (352)
T ss_pred hhhhhhhhhhhhcccccccccccCCCc-cccccc--cccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeE
Confidence 000000000000000000000000000 000000 00000000001123455799999999999999999999999999
Q ss_pred EEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecHH
Q 015870 334 SCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386 (399)
Q Consensus 334 ~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 386 (399)
+++++.+. ++.++|||||+|.+.++|.+|+..|||..|+||.|+|+|+.+|..
T Consensus 298 ~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 298 NVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999987 899999999999999999999999999999999999999988753
No 5
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=2.8e-40 Score=303.58 Aligned_cols=297 Identities=23% Similarity=0.356 Sum_probs=242.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC-CcccEEe
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN-GKPIRVM 98 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~-g~~i~v~ 98 (399)
+...++|||+|||+++++++|+++|++||.|.++.++++ .+|.++|||||+|.+.++|++|++.||+..+. |+.+.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 456799999999999999999999999999999999999 78999999999999999999999999998875 7777776
Q ss_pred eccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCC-eEEEEEeeC--CCCCceeEEEEEecCHHHHHHHHHHhcC-
Q 015870 99 YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN-ILSCKVATD--LNGQSKGYGFVQFDNEESAQKAIEKLNG- 174 (399)
Q Consensus 99 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~-v~~~~~~~~--~~~~~~g~a~v~f~~~~~a~~a~~~l~~- 174 (399)
.+. ..++|+|+|||+++++++|.+.|+.++. +.++.+... ..+.++|+|||+|.++++|..|+..|..
T Consensus 134 ~S~--------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~g 205 (578)
T TIGR01648 134 ISV--------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPG 205 (578)
T ss_pred ccc--------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhcc
Confidence 553 2468999999999999999999999863 555544433 3356789999999999999999998864
Q ss_pred -CccCCceeeeecccccccchhhcccCCcceEEeecCCcCccHHHHHHHhccc--CCeeEEEEEECCCCCeeeEEEEEeC
Q 015870 175 -MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY--GTITSAVVMRDGDGKSKCFGFVNFE 251 (399)
Q Consensus 175 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~g~~~v~f~ 251 (399)
..+.++.|.+.+..+...... .......+|||+||+.++++++|.++|+.| |.|..+.++. ++|||+|.
T Consensus 206 ki~l~Gr~I~VdwA~p~~~~d~-~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~ 277 (578)
T TIGR01648 206 RIQLWGHVIAVDWAEPEEEVDE-DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFE 277 (578)
T ss_pred ceEecCceEEEEeecccccccc-cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeC
Confidence 457899999988765543221 223345789999999999999999999999 9999987653 48999999
Q ss_pred CHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHH----------HHHHHHhhHHhhhccCCceEEEecCCCcCCHHH
Q 015870 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL----------KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321 (399)
Q Consensus 252 ~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~d 321 (399)
+.++|.+|+..+++..+.|+.|.|.++.+........ ............-.+.+.++++.|+++.++++.
T Consensus 278 s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~ 357 (578)
T TIGR01648 278 DREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAP 357 (578)
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccc
Confidence 9999999999999999999999999998754321100 000000111122345678999999999999999
Q ss_pred HHHhhcCcCCce
Q 015870 322 LKQLFSPFGSIT 333 (399)
Q Consensus 322 l~~~f~~~G~v~ 333 (399)
+.++|...|.|.
T Consensus 358 ~~~~f~~~g~~~ 369 (578)
T TIGR01648 358 SLHFPRMPGPIR 369 (578)
T ss_pred hhhccccCcccc
Confidence 999999988765
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.6e-40 Score=257.95 Aligned_cols=315 Identities=29% Similarity=0.471 Sum_probs=239.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
.....+.|.|.-||.+.|++||+.+|...|+|+++++++|+.+|.+-||+||.|.+++||.+|+..|||..+..++|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 36677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhcCCcc
Q 015870 99 YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177 (399)
Q Consensus 99 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~ 177 (399)
++.++... .+...|||.+||..+|..+|.++|++||.|....+..+ .++.++|.+||.|.-..+|..|++.|+|..-
T Consensus 117 yARPSs~~--Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 117 YARPSSDS--IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred eccCChhh--hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 99765433 34567999999999999999999999998877777777 6799999999999999999999999999876
Q ss_pred CCce--eeeecccccccchhhcccCCcceEEeecCCcCccHHHHHHHhcc----cCCeeEEEEEECCCCCeeeEEEEEeC
Q 015870 178 NDKQ--VYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGE----YGTITSAVVMRDGDGKSKCFGFVNFE 251 (399)
Q Consensus 178 ~~~~--~~v~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~----~g~v~~~~~~~~~~~~~~g~~~v~f~ 251 (399)
.|.. |.|.+...+.. ..+..-+..++.. |+.-......+ ..+.
T Consensus 195 ~g~tepItVKFannPsq--------------------~t~~a~ls~ly~sp~rr~~Gp~hh~~~r-----------~r~~ 243 (360)
T KOG0145|consen 195 SGCTEPITVKFANNPSQ--------------------KTNQALLSQLYQSPARRYGGPMHHQAQR-----------FRLD 243 (360)
T ss_pred CCCCCCeEEEecCCccc--------------------ccchhhhHHhhcCccccCCCcccchhhh-----------hccc
Confidence 6653 44443332211 1122222222221 11100000000 0011
Q ss_pred CHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCC
Q 015870 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGS 331 (399)
Q Consensus 252 ~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~ 331 (399)
+.-....++.......+++-.--+...- ......+.+|||.||.+++++.-|..+|.+||.
T Consensus 244 ~~~~~~~~~~rfsP~~~d~m~~l~~~~l-------------------p~~~~~g~ciFvYNLspd~de~~LWQlFgpFGA 304 (360)
T KOG0145|consen 244 NLLNPHAAQARFSPMTIDGMSGLAGVNL-------------------PGGPGGGWCIFVYNLSPDADESILWQLFGPFGA 304 (360)
T ss_pred cccchhhhhccCCCccccccceeeeecc-------------------CCCCCCeeEEEEEecCCCchHhHHHHHhCcccc
Confidence 1111122222222222222221111100 012234689999999999999999999999999
Q ss_pred ceEEEEeeCCC-CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecH
Q 015870 332 ITSCKVMRDPS-GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (399)
Q Consensus 332 v~~v~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 385 (399)
|.+|+++++.+ .+.+||+||++.+-++|..|+..|||+.+++|.|.|+|..+|.
T Consensus 305 v~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 305 VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred eeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCCC
Confidence 99999999974 7899999999999999999999999999999999999987663
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7.4e-39 Score=305.87 Aligned_cols=259 Identities=41% Similarity=0.677 Sum_probs=231.5
Q ss_pred eEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeecccccc
Q 015870 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191 (399)
Q Consensus 113 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~ 191 (399)
+|||+|||+++|+++|.++|+.||.|.+|.+..+. ++.++|||||+|.+.++|.+|++.+++..+.|+.|++.+.....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999984 58899999999999999999999999999999999998865332
Q ss_pred cchhhcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 015870 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK 271 (399)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~ 271 (399)
. .......+|+|+|||.++++++|.++|+.||.|..|.+..+..+.++|+|||.|.+.++|..|+..++|..+.++
T Consensus 82 ~----~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~ 157 (562)
T TIGR01628 82 S----LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDK 157 (562)
T ss_pred c----ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCc
Confidence 1 122334679999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred eeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEE
Q 015870 272 EWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351 (399)
Q Consensus 272 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV 351 (399)
.+.+....+..... .......++|||+|||.++++++|+++|+.||.|.++.+.++.+|+++|||||
T Consensus 158 ~i~v~~~~~~~~~~-------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV 224 (562)
T TIGR01628 158 EVYVGRFIKKHERE-------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFV 224 (562)
T ss_pred eEEEeccccccccc-------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEE
Confidence 99997655433321 11233456899999999999999999999999999999999989999999999
Q ss_pred EeCCHHHHHHHHHHhcCceec----CeeEEEEEeeecHHHH
Q 015870 352 AFSTPEEASRALLEMNGKMVV----SKPLYVALAQRKEDRR 388 (399)
Q Consensus 352 ~f~~~~~A~~A~~~l~~~~~~----g~~l~v~~a~~~~~~~ 388 (399)
+|.+.++|.+|++.|+|..+. |+.|.|.+++++.++.
T Consensus 225 ~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~ 265 (562)
T TIGR01628 225 NFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAERE 265 (562)
T ss_pred EECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhH
Confidence 999999999999999999999 9999999999887764
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=2.8e-38 Score=290.48 Aligned_cols=282 Identities=23% Similarity=0.351 Sum_probs=228.0
Q ss_pred CHHHHHHHHHHhCCCCCCCcccEEeeccCCc---ccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCC
Q 015870 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDP---SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ 150 (399)
Q Consensus 74 ~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~~---~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~ 150 (399)
-.+.|.+|+..+++..+........+..+.+ .......++|||+|||+++++++|.++|+.+|.|.++.++.+.++.
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~ 97 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ 97 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC
Confidence 3578899998888766554444444432222 1123345789999999999999999999999999999999998899
Q ss_pred ceeEEEEEecCHHHHHHHHHHhcCCccC-CceeeeecccccccchhhcccCCcceEEeecCCcCccHHHHHHHhcccCC-
Q 015870 151 SKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT- 228 (399)
Q Consensus 151 ~~g~a~v~f~~~~~a~~a~~~l~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~- 228 (399)
++|||||+|.+.++|..|++.|++..+. ++.+.+.... ...+|||+|||+++++++|.+.|+.++.
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~------------~~~rLFVgNLP~~~TeeeL~eeFskv~eg 165 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV------------DNCRLFVGGIPKNKKREEILEEFSKVTEG 165 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc------------cCceeEeecCCcchhhHHHHHHhhcccCC
Confidence 9999999999999999999999998875 6666554321 2478999999999999999999999864
Q ss_pred eeEEEEEEC--CCCCeeeEEEEEeCCHHHHHHHHHHhCC--CccCCceeEEeccccchHHHHHHHHHHHHhhHHhhhccC
Q 015870 229 ITSAVVMRD--GDGKSKCFGFVNFENSDDAARAVEALNG--KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304 (399)
Q Consensus 229 v~~~~~~~~--~~~~~~g~~~v~f~~~~~a~~a~~~l~g--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (399)
+..+.+.+. ..+.++|+|||+|.++++|..|+..+.. ..+.|+.|.|.++.+...... .....
T Consensus 166 vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~-------------~~~~~ 232 (578)
T TIGR01648 166 VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE-------------DVMAK 232 (578)
T ss_pred ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc-------------ccccc
Confidence 444444332 3356789999999999999999988764 357899999999876432211 11223
Q ss_pred CceEEEecCCCcCCHHHHHHhhcCc--CCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFSPF--GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~~~--G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
.++|||+||++.+++++|+++|++| |.|++|++++ +||||+|++.++|.+|++.||+..|+|+.|+|+||+
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 5789999999999999999999999 9999998764 499999999999999999999999999999999999
Q ss_pred ecHHH
Q 015870 383 RKEDR 387 (399)
Q Consensus 383 ~~~~~ 387 (399)
++...
T Consensus 306 p~~~~ 310 (578)
T TIGR01648 306 PVDKK 310 (578)
T ss_pred CCCcc
Confidence 86543
No 9
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.2e-38 Score=268.67 Aligned_cols=254 Identities=28% Similarity=0.452 Sum_probs=228.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC-CcccE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN-GKPIR 96 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~-g~~i~ 96 (399)
+.+..++.|||+.||.++.|+||.-+|++.|+|.++.++++..+|.++|||||.|.+.+.|++|++.||+..|. |+.|.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999885 89999
Q ss_pred EeeccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccC-CeEEEEEeeCCC--CCceeEEEEEecCHHHHHHHHHHhc
Q 015870 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG-NILSCKVATDLN--GQSKGYGFVQFDNEESAQKAIEKLN 173 (399)
Q Consensus 97 v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~~~~~~~~~--~~~~g~a~v~f~~~~~a~~a~~~l~ 173 (399)
|..+-. .++|||+|||.+.++++|.+.++.-+ .|.++.+...+. .+++|||||+|.++..|..|..+|-
T Consensus 158 vc~Sva--------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~ 229 (506)
T KOG0117|consen 158 VCVSVA--------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLM 229 (506)
T ss_pred EEEeee--------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhcc
Confidence 987743 47899999999999999999998876 678888887744 6789999999999999999999883
Q ss_pred --CCccCCceeeeecccccccchhhcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeC
Q 015870 174 --GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251 (399)
Q Consensus 174 --~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~ 251 (399)
...+.|..+.|.|..+....+.. ....-..|||.||+.++|++.|..+|+.||.|..++.+++ +|||.|.
T Consensus 230 ~g~~klwgn~~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~ 301 (506)
T KOG0117|consen 230 PGKIKLWGNAITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFA 301 (506)
T ss_pred CCceeecCCcceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeec
Confidence 45778999999999887776655 4556678999999999999999999999999999988755 8999999
Q ss_pred CHHHHHHHHHHhCCCccCCceeEEeccccchHHHHH
Q 015870 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287 (399)
Q Consensus 252 ~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~ 287 (399)
+.++|.+|++.++|..++|..|.+.+++|.......
T Consensus 302 eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 302 EREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred chHHHHHHHHHhcCceecCceEEEEecCChhhhccc
Confidence 999999999999999999999999999987765444
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.9e-38 Score=266.59 Aligned_cols=282 Identities=26% Similarity=0.400 Sum_probs=233.3
Q ss_pred CCHHHHHHHHHHhCCCCCCCcccEEeeccCC--------cccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEe
Q 015870 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRD--------PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144 (399)
Q Consensus 73 ~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~--------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~ 144 (399)
.+.++|.+++..-. |..|.+....+. ........+.+||+.||.++.+++|.-+|+..|.|-++.++
T Consensus 42 ~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLM 116 (506)
T KOG0117|consen 42 QSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLM 116 (506)
T ss_pred ccHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEe
Confidence 35788888887532 334444332211 11122446789999999999999999999999999999999
Q ss_pred eC-CCCCceeEEEEEecCHHHHHHHHHHhcCCcc-CCceeeeecccccccchhhcccCCcceEEeecCCcCccHHHHHHH
Q 015870 145 TD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLL-NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222 (399)
Q Consensus 145 ~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~ 222 (399)
.+ -+|.++|||||.|.+.++|+.|++.|++..| .|+.|.+..+.. .++|||+|+|...++++|.+.
T Consensus 117 mD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva------------n~RLFiG~IPK~k~keeIlee 184 (506)
T KOG0117|consen 117 MDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA------------NCRLFIGNIPKTKKKEEILEE 184 (506)
T ss_pred ecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee------------cceeEeccCCccccHHHHHHH
Confidence 99 7899999999999999999999999999877 677888766533 277999999999999999999
Q ss_pred hcccCC-eeEEEEEEC--CCCCeeeEEEEEeCCHHHHHHHHHHhCC--CccCCceeEEeccccchHHHHHHHHHHHHhhH
Q 015870 223 FGEYGT-ITSAVVMRD--GDGKSKCFGFVNFENSDDAARAVEALNG--KKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297 (399)
Q Consensus 223 f~~~g~-v~~~~~~~~--~~~~~~g~~~v~f~~~~~a~~a~~~l~g--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~ 297 (399)
+++.+. |.++.+... ...+.+|+|||+|.++..|..|...|-. ..+-|..+.|.|+.+........-.
T Consensus 185 ~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms------- 257 (506)
T KOG0117|consen 185 MKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMS------- 257 (506)
T ss_pred HHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhh-------
Confidence 999875 777766655 3467899999999999999999887743 4478999999999876554322211
Q ss_pred HhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 015870 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (399)
Q Consensus 298 ~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 377 (399)
.-..|||+||+.++|++.|+.+|+.||.|+.|+.+++ ||||+|.++++|.+|++.+||..|+|..|.
T Consensus 258 ------~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iE 324 (506)
T KOG0117|consen 258 ------KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIE 324 (506)
T ss_pred ------heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEE
Confidence 1246999999999999999999999999999998876 999999999999999999999999999999
Q ss_pred EEEeeecHHHHHHh
Q 015870 378 VALAQRKEDRRARL 391 (399)
Q Consensus 378 v~~a~~~~~~~~~~ 391 (399)
|.+|||.++++..+
T Consensus 325 vtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 325 VTLAKPVDKKKKER 338 (506)
T ss_pred EEecCChhhhccch
Confidence 99999998877554
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.4e-37 Score=268.49 Aligned_cols=344 Identities=25% Similarity=0.415 Sum_probs=274.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccC
Q 015870 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (399)
Q Consensus 23 ~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (399)
+.||||++||+.++.+.|.++|+.+|+|..+.++.++.++..+||+||.|+=.+|+++|+....+..|.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 48999999999999999999999999999999999988889999999999999999999999999999999999988754
Q ss_pred Ccccc------------------------cCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEE
Q 015870 103 DPSLR------------------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQ 158 (399)
Q Consensus 103 ~~~~~------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~ 158 (399)
..... ......|.|+|||+.+.+.+|..+|+.||.|..+.|+....+...|||||.
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 32111 011357999999999999999999999999999999988888888999999
Q ss_pred ecCHHHHHHHHHHhcCCccCCceeeeecccccccchh-------------------h----c------------------
Q 015870 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT-------------------E----I------------------ 197 (399)
Q Consensus 159 f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~-------------------~----~------------------ 197 (399)
|....+|..|++.+++..+.|+.+.|.|..++..-.. . .
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe 244 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEE 244 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccccc
Confidence 9999999999999999999999999988765321000 0 0
Q ss_pred -------------------------------------------ccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEE
Q 015870 198 -------------------------------------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234 (399)
Q Consensus 198 -------------------------------------------~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~ 234 (399)
......++||.|||+++++++|.+.|++||.|....+
T Consensus 245 ~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~i 324 (678)
T KOG0127|consen 245 TDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAII 324 (678)
T ss_pred ccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEE
Confidence 0000045999999999999999999999999999887
Q ss_pred EEC-CCCCeeeEEEEEeCCHHHHHHHHHHh-----CC-CccCCceeEEeccccchHHHHHHHHHHHHh------------
Q 015870 235 MRD-GDGKSKCFGFVNFENSDDAARAVEAL-----NG-KKFDDKEWYVGKAQKKSERELELKHQFEQN------------ 295 (399)
Q Consensus 235 ~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l-----~g-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~------------ 295 (399)
+-. .++++.|.|||.|.+..+|..++... .| ..++|+.|.|..+.+...............
T Consensus 325 V~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~E 404 (678)
T KOG0127|consen 325 VKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLARE 404 (678)
T ss_pred EeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeecc
Confidence 766 67899999999999999999999865 23 668999999998866544333211100000
Q ss_pred ------------------h-------------HHhhhccCCceEEEecCCCcCCHHHHHHhhcC----c-CCce-EEEEe
Q 015870 296 ------------------M-------------KEAADKFQGANLYIKNLDDSIDDEKLKQLFSP----F-GSIT-SCKVM 338 (399)
Q Consensus 296 ------------------~-------------~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~----~-G~v~-~v~~~ 338 (399)
. ..+..-.+.+.|.|.|||..++...|..+..+ | +.+. -++.+
T Consensus 405 G~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~ 484 (678)
T KOG0127|consen 405 GLIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQI 484 (678)
T ss_pred CccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhh
Confidence 0 00000124566999999999999999988753 2 2222 22333
Q ss_pred eCC----CCCcccEEEEEeCCHHHHHHHHHHh
Q 015870 339 RDP----SGISRGSGFVAFSTPEEASRALLEM 366 (399)
Q Consensus 339 ~~~----~~~~~g~afV~f~~~~~A~~A~~~l 366 (399)
... .+.+.||||+.|..++.|.+|+..+
T Consensus 485 ~~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 485 KFLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred hhHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 321 4668899999999999999999766
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=5.6e-37 Score=286.77 Aligned_cols=342 Identities=22% Similarity=0.317 Sum_probs=232.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
...+..++|||+|||.++++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|+. |++..+.|+.|.|
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v 162 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIV 162 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEE
Confidence 345678999999999999999999999999999999999999999999999999999999999997 7999999999999
Q ss_pred eeccCCccc----------ccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCC-CCCceeEEEEEecCHHHHH
Q 015870 98 MYSHRDPSL----------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQ 166 (399)
Q Consensus 98 ~~~~~~~~~----------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~v~f~~~~~a~ 166 (399)
..+...... ......+|||+|||..+++++|.++|+.||.|..+.+..+. .+.++|+|||+|.+.++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 876432111 11225789999999999999999999999999999999884 4688999999999999999
Q ss_pred HHHHHhcCCccCCceeeeecccccccchhhcccCC-c-ceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeee
Q 015870 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-F-TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244 (399)
Q Consensus 167 ~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~-~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g 244 (399)
.|++.|+|..+.|+.|.|.+............... . ..-..+..........+...+...+......+... .
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----- 316 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGT-G----- 316 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCc-c-----
Confidence 99999999999999999998763322211100000 0 00000000111122223222222221100000000 0
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHHHHHHHHhhH-HhhhccCCceEEEecCCCcCC-----
Q 015870 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK-EAADKFQGANLYIKNLDDSID----- 318 (399)
Q Consensus 245 ~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~v~nl~~~~~----- 318 (399)
.....| ..+.........+...... ............ ......++.+|+|.||....+
T Consensus 317 ~~~~~~----------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~ 380 (457)
T TIGR01622 317 SKIALM----------QKLQRDGIIDPNIPSRYAT------GALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPN 380 (457)
T ss_pred chhhhh----------ccccccccccccccccccc------cccccccCCCCCCcccCCCCCcEEEEecCCCCcccccch
Confidence 000000 0000000000000000000 000000000000 001234678999999965443
Q ss_pred -----HHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecH
Q 015870 319 -----DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (399)
Q Consensus 319 -----~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 385 (399)
.+||++.|++||.|+.|.+... ...|++||.|.++++|.+|++.|||++|+|+.|.+.|.....
T Consensus 381 ~~~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 381 FDNEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 3689999999999999988643 347899999999999999999999999999999999987544
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=3e-37 Score=283.84 Aligned_cols=173 Identities=24% Similarity=0.452 Sum_probs=155.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
......++|||+|||+++++++|+++|.+||+|.+|.++.++.+++++|||||+|.+.++|++|+..||+..+.|+.|+|
T Consensus 102 ~a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV 181 (612)
T TIGR01645 102 QALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 181 (612)
T ss_pred hhhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeee
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCccc---------ccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCC-CCCceeEEEEEecCHHHHHH
Q 015870 98 MYSHRDPSL---------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQK 167 (399)
Q Consensus 98 ~~~~~~~~~---------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~v~f~~~~~a~~ 167 (399)
.++...+.. .....++|||+|||+++++++|+++|+.||.|..+.+..++ .+..+|||||+|.+.++|..
T Consensus 182 ~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 182 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 865432211 11234689999999999999999999999999999999984 57789999999999999999
Q ss_pred HHHHhcCCccCCceeeeeccccc
Q 015870 168 AIEKLNGMLLNDKQVYVGHFLRK 190 (399)
Q Consensus 168 a~~~l~~~~~~~~~~~v~~~~~~ 190 (399)
|++.|++..++|+.|+|.+...+
T Consensus 262 AI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCC
Confidence 99999999999999999876653
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.6e-37 Score=258.49 Aligned_cols=365 Identities=25% Similarity=0.390 Sum_probs=238.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC-CCC--cccE
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP-LNG--KPIR 96 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~-~~g--~~i~ 96 (399)
+...-.+||+-||..++|.||+++|++||.|.+|.+++|+.++.++|||||.|.+.++|.+|+..||+.. +.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3566789999999999999999999999999999999999999999999999999999999999999764 444 6788
Q ss_pred EeeccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCC-
Q 015870 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM- 175 (399)
Q Consensus 97 v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~- 175 (399)
|.+++.... +....++|||+.|+..+|+.+++++|++||.|++|.+.++..+.++|+|||.|.+.+.|..|++.|++.
T Consensus 111 vk~Ad~E~e-r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 111 VKYADGERE-RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ecccchhhh-ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccce
Confidence 888865433 224567899999999999999999999999999999999999999999999999999999999999985
Q ss_pred ccCC--ceeeeecccccccchhhcc--cCCcceEEe-----------------------------------ecCCcC--c
Q 015870 176 LLND--KQVYVGHFLRKQERDTEIN--KSKFTNVYV-----------------------------------KNLSES--T 214 (399)
Q Consensus 176 ~~~~--~~~~v~~~~~~~~~~~~~~--~~~~~~l~i-----------------------------------~~l~~~--~ 214 (399)
.+.| ..+.|.+.....++..... ..+..-..+ +++|+- +
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l 269 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPL 269 (510)
T ss_pred eeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCc
Confidence 3344 4667777665544332211 000000011 111111 1
Q ss_pred cHHHHHHH--hcccCCeeEEE-------EEEC-CC--CC--e--eeEEEEEe----CCHHHHHHHHHHhCCCcc--C--C
Q 015870 215 TEEDLQKS--FGEYGTITSAV-------VMRD-GD--GK--S--KCFGFVNF----ENSDDAARAVEALNGKKF--D--D 270 (399)
Q Consensus 215 ~~~~l~~~--f~~~g~v~~~~-------~~~~-~~--~~--~--~g~~~v~f----~~~~~a~~a~~~l~g~~~--~--~ 270 (399)
+...+... ......-..-. ..+. .+ +. + ...++-.- .+.-...-+...+.+... . +
T Consensus 270 ~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~ 349 (510)
T KOG0144|consen 270 NATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAG 349 (510)
T ss_pred chhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccc
Confidence 11111110 00000000000 0000 00 00 0 00000000 000000000111111000 0 0
Q ss_pred cee----------------EEeccccchHH--HHHHH--HHHHH---------------------hhHHhhhccCCceEE
Q 015870 271 KEW----------------YVGKAQKKSER--ELELK--HQFEQ---------------------NMKEAADKFQGANLY 309 (399)
Q Consensus 271 ~~l----------------~v~~~~~~~~~--~~~~~--~~~~~---------------------~~~~~~~~~~~~~l~ 309 (399)
... .... .+.... ..... +.... .......++.+..+|
T Consensus 350 ~~a~a~~~sp~aa~~~~lq~~~l-tp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlf 428 (510)
T KOG0144|consen 350 GMAGAGTTSPVAASLANLQQIGL-TPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLF 428 (510)
T ss_pred ccccccccCcccccccccccccC-CChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCcccee
Confidence 000 0000 000000 00000 00000 001112346678899
Q ss_pred EecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecHH
Q 015870 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386 (399)
Q Consensus 310 v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 386 (399)
|.+||-+.-+.||-..|..||.|.+.++..+. ++.+++|.||.|++..+|..||..|||+.+++++++|.+.+++..
T Consensus 429 iyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 429 IYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred eeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 99999999999999999999999999876654 899999999999999999999999999999999999999987653
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=9.8e-36 Score=276.88 Aligned_cols=262 Identities=21% Similarity=0.329 Sum_probs=209.2
Q ss_pred CceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh--cCCccCCceeeeeccc
Q 015870 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL--NGMLLNDKQVYVGHFL 188 (399)
Q Consensus 111 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l--~~~~~~~~~~~v~~~~ 188 (399)
++.|+|+|||+.+++++|.++|+.||.|.++.++++ +++|||+|.+.++|..|++.+ ++..+.|+.+.+.+..
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 567999999999999999999999999999998864 689999999999999999975 6789999999999876
Q ss_pred ccccchhh------cccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHH
Q 015870 189 RKQERDTE------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262 (399)
Q Consensus 189 ~~~~~~~~------~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~ 262 (399)
........ .......+|+|.||++.+++++|.++|+.||.|..+.+.++.. ++.|||+|.+.++|.+|+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~~~A~~A~~~ 153 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESVNSAQHAKAA 153 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEEEEEECCHHHHHHHHHH
Confidence 54322111 1112234789999999999999999999999999999877532 35799999999999999999
Q ss_pred hCCCccCC--ceeEEeccccchHH------H--------------HHH-----HHHH-----------------------
Q 015870 263 LNGKKFDD--KEWYVGKAQKKSER------E--------------LEL-----KHQF----------------------- 292 (399)
Q Consensus 263 l~g~~~~~--~~l~v~~~~~~~~~------~--------------~~~-----~~~~----------------------- 292 (399)
|+|..+.+ ..|.+.++.+.... . ... ....
T Consensus 154 Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (481)
T TIGR01649 154 LNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLA 233 (481)
T ss_pred hcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCC
Confidence 99999865 46777766532210 0 000 0000
Q ss_pred ---HHh---------h-------------H----HhhhccCCceEEEecCCC-cCCHHHHHHhhcCcCCceEEEEeeCCC
Q 015870 293 ---EQN---------M-------------K----EAADKFQGANLYIKNLDD-SIDDEKLKQLFSPFGSITSCKVMRDPS 342 (399)
Q Consensus 293 ---~~~---------~-------------~----~~~~~~~~~~l~v~nl~~-~~~~~dl~~~f~~~G~v~~v~~~~~~~ 342 (399)
... . . .....+++++|+|+|||+ .+++++|+++|+.||.|.+|+++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-- 311 (481)
T TIGR01649 234 PLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-- 311 (481)
T ss_pred cccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--
Confidence 000 0 0 000123667999999998 6999999999999999999999886
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeec
Q 015870 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (399)
Q Consensus 343 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 384 (399)
.+|+|||+|.+.++|..|+..|||..+.|++|+|++++..
T Consensus 312 --~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 312 --KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred --CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 2689999999999999999999999999999999998754
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=7.8e-34 Score=269.39 Aligned_cols=256 Identities=22% Similarity=0.383 Sum_probs=206.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhcc------------CCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQM------------GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~------------g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l 85 (399)
...+..++|||+|||+++|+++|+++|.++ ++|.++.+. ..+|||||+|.+.++|..|+. |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhc-C
Confidence 346678999999999999999999999975 345555443 345799999999999999996 8
Q ss_pred CCCCCCCcccEEeeccCCcc---------------------------cccCCCceEEEcCCCcccCHHHHHHHhcccCCe
Q 015870 86 NFTPLNGKPIRVMYSHRDPS---------------------------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138 (399)
Q Consensus 86 ~~~~~~g~~i~v~~~~~~~~---------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v 138 (399)
++..|.|..|+|........ .......+|||+|||..+++++|.++|+.||.|
T Consensus 243 ~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred CCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 99999999999975432110 011234689999999999999999999999999
Q ss_pred EEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeecccccccchh----------------------
Q 015870 139 LSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT---------------------- 195 (399)
Q Consensus 139 ~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~---------------------- 195 (399)
..+.++.+ ..+.++|||||+|.+.++|..|++.|+|..+.|+.|.|.+.........
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSIL 402 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhc
Confidence 99999888 5688999999999999999999999999999999998877542211100
Q ss_pred hcccCCcceEEeecCCcCc----------cHHHHHHHhcccCCeeEEEEEECC----CCCeeeEEEEEeCCHHHHHHHHH
Q 015870 196 EINKSKFTNVYVKNLSEST----------TEEDLQKSFGEYGTITSAVVMRDG----DGKSKCFGFVNFENSDDAARAVE 261 (399)
Q Consensus 196 ~~~~~~~~~l~i~~l~~~~----------~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~g~~~v~f~~~~~a~~a~~ 261 (399)
.....++..|++.|+.... ..++|.++|+.||.|..+.++... .+.+.|++||+|.+.++|..|+.
T Consensus 403 ~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~ 482 (509)
T TIGR01642 403 QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAME 482 (509)
T ss_pred cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHH
Confidence 0012345678899986431 236899999999999999988652 23457899999999999999999
Q ss_pred HhCCCccCCceeEEecccc
Q 015870 262 ALNGKKFDDKEWYVGKAQK 280 (399)
Q Consensus 262 ~l~g~~~~~~~l~v~~~~~ 280 (399)
.|+|..|.|+.|.+.+...
T Consensus 483 ~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 483 GMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HcCCCEECCeEEEEEEeCH
Confidence 9999999999999998764
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5e-34 Score=247.91 Aligned_cols=276 Identities=26% Similarity=0.444 Sum_probs=229.5
Q ss_pred ceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeeccccc
Q 015870 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190 (399)
Q Consensus 112 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~ 190 (399)
.+|+|++||+.++.++|.++|+..|+|.++.+..+ ..+..+||+||.|+-.+++.+|+....+..+.|+.|.+.+....
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 68999999999999999999999999999999998 45689999999999999999999999999999999999876654
Q ss_pred ccchh-----------hc-------c--cCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEe
Q 015870 191 QERDT-----------EI-------N--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250 (399)
Q Consensus 191 ~~~~~-----------~~-------~--~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f 250 (399)
..... .. . ..+-..|+|.|||+.+..++|..+|+.||.|..+.|++..++...|+|||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 32220 00 0 1123569999999999999999999999999999999888888899999999
Q ss_pred CCHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHH---HHHHHHhh--------------------------H-H--
Q 015870 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL---KHQFEQNM--------------------------K-E-- 298 (399)
Q Consensus 251 ~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~---~~~~~~~~--------------------------~-~-- 298 (399)
....+|..|+..+++..+.|++|.|.|+.++....... ..+..... . +
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 99999999999999999999999999997654332211 00000000 0 0
Q ss_pred ----------------------------------------hhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEe
Q 015870 299 ----------------------------------------AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVM 338 (399)
Q Consensus 299 ----------------------------------------~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~ 338 (399)
..+..-+.+|||.|||+++++++|..+|++||.|.++.|+
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0000113679999999999999999999999999999998
Q ss_pred eCC-CCCcccEEEEEeCCHHHHHHHHHHh-----cC-ceecCeeEEEEEeeecHHH
Q 015870 339 RDP-SGISRGSGFVAFSTPEEASRALLEM-----NG-KMVVSKPLYVALAQRKEDR 387 (399)
Q Consensus 339 ~~~-~~~~~g~afV~f~~~~~A~~A~~~l-----~~-~~~~g~~l~v~~a~~~~~~ 387 (399)
.++ ++.+.|.|||.|.+..+|.++|.+. .| ..++||.|.|..|-.+.+-
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEA 381 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHH
Confidence 886 8999999999999999999999887 33 7889999999999877653
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=7.9e-34 Score=269.32 Aligned_cols=269 Identities=18% Similarity=0.262 Sum_probs=207.6
Q ss_pred CCCceEEEcCCCcccCHHHHHHHhccc------------CCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCc
Q 015870 109 SGAGNIFIKNLDKAIDHKALHDTFSAF------------GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (399)
Q Consensus 109 ~~~~~l~v~nlp~~~t~~~l~~~f~~~------------g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 176 (399)
...++|||+|||+.+|+++|.++|..+ +.|..+.+. ..+|||||+|.+.++|..|+. |+|..
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----~~kg~afVeF~~~e~A~~Al~-l~g~~ 246 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----KEKNFAFLEFRTVEEATFAMA-LDSII 246 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----CCCCEEEEEeCCHHHHhhhhc-CCCeE
Confidence 456789999999999999999999875 233333332 357899999999999999995 99999
Q ss_pred cCCceeeeecccccccch-----------------------hhcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEE
Q 015870 177 LNDKQVYVGHFLRKQERD-----------------------TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233 (399)
Q Consensus 177 ~~~~~~~v~~~~~~~~~~-----------------------~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~ 233 (399)
+.|..|.+.......... ........++|||+|||..+++++|.++|..||.|..+.
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 999999886433221000 000122346899999999999999999999999999999
Q ss_pred EEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHH--------HH--HHHHhhHHhhhc
Q 015870 234 VMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL--------KH--QFEQNMKEAADK 302 (399)
Q Consensus 234 ~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~ 302 (399)
++.+ ..|.++|+|||+|.+.++|..|+..|+|..+.|+.|.|.++.......... .. ............
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGG 406 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccC
Confidence 8876 568889999999999999999999999999999999998874321110000 00 000000011223
Q ss_pred cCCceEEEecCCCcC----------CHHHHHHhhcCcCCceEEEEeeCC----CCCcccEEEEEeCCHHHHHHHHHHhcC
Q 015870 303 FQGANLYIKNLDDSI----------DDEKLKQLFSPFGSITSCKVMRDP----SGISRGSGFVAFSTPEEASRALLEMNG 368 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~----------~~~dl~~~f~~~G~v~~v~~~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~~ 368 (399)
.++.+|+|.|+...- ..+||+++|++||.|.+|.|++.. .+...|+|||+|.+.++|.+|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 467889999996421 236899999999999999998752 345679999999999999999999999
Q ss_pred ceecCeeEEEEEeee
Q 015870 369 KMVVSKPLYVALAQR 383 (399)
Q Consensus 369 ~~~~g~~l~v~~a~~ 383 (399)
..|+|+.|.|.|..+
T Consensus 487 r~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 487 RKFNDRVVVAAFYGE 501 (509)
T ss_pred CEECCeEEEEEEeCH
Confidence 999999999999764
No 19
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-34 Score=227.50 Aligned_cols=234 Identities=26% Similarity=0.488 Sum_probs=193.4
Q ss_pred CCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeeccc
Q 015870 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188 (399)
Q Consensus 109 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~ 188 (399)
...++|||+||...+|++-|..+|+..|.+..++++.+ .+.+.+..
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWAT 49 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhcccccc
Confidence 34578999999999999999999999999999988764 12222222
Q ss_pred ccccchhhcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCc
Q 015870 189 RKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKK 267 (399)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~ 267 (399)
.+..+... .....-.++++.|.+.++.++|++.|.+||.|.+++++++ ..++++|++||.|.+.++|+.|+..|+|..
T Consensus 50 ~p~nQsk~-t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW 128 (321)
T KOG0148|consen 50 APGNQSKP-TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW 128 (321)
T ss_pred CcccCCCC-ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee
Confidence 22111110 1111244889999999999999999999999999999998 778999999999999999999999999999
Q ss_pred cCCceeEEeccccchHHHHHHHHHHHHhhHHh--hhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCc
Q 015870 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEA--ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS 345 (399)
Q Consensus 268 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~ 345 (399)
+.+|.|+.+|+..+......-+ -...+. ...+++++||++|++...++++|++.|++||.|..||+.++
T Consensus 129 lG~R~IRTNWATRKp~e~n~~~----ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~----- 199 (321)
T KOG0148|consen 129 LGRRTIRTNWATRKPSEMNGKP----LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD----- 199 (321)
T ss_pred eccceeeccccccCccccCCCC----ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----
Confidence 9999999999987762211111 111222 23578899999999999999999999999999999999998
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecHH
Q 015870 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386 (399)
Q Consensus 346 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 386 (399)
+|||||.|++.|.|..||-.+||..++|..++.+|.|....
T Consensus 200 qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 200 QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 89999999999999999999999999999999999986543
No 20
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=6.1e-34 Score=255.44 Aligned_cols=332 Identities=26% Similarity=0.397 Sum_probs=265.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
..-..+-+|||+|||+.++++|++.+| |||.|..++.|.+|...+++..+.|+-++|
T Consensus 222 e~i~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhv 278 (725)
T KOG0110|consen 222 EDISETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHV 278 (725)
T ss_pred hHHHhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeee
Confidence 345567899999999999999999999 799999999999999999999999999988
Q ss_pred eeccCCccc-----------------------------------------------------------------------
Q 015870 98 MYSHRDPSL----------------------------------------------------------------------- 106 (399)
Q Consensus 98 ~~~~~~~~~----------------------------------------------------------------------- 106 (399)
.........
T Consensus 279 lp~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~et 358 (725)
T KOG0110|consen 279 LPSKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGET 358 (725)
T ss_pred cCcchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHh
Confidence 664311000
Q ss_pred ----------------------ccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHH
Q 015870 107 ----------------------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEES 164 (399)
Q Consensus 107 ----------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~ 164 (399)
.......++++|||..+..+++..+|..||.|..+.++ +.| -.++|.|.++.+
T Consensus 359 r~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G---~~aiv~fl~p~e 433 (725)
T KOG0110|consen 359 RVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGG---TGAIVEFLNPLE 433 (725)
T ss_pred hhchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--ccc---ceeeeeecCccc
Confidence 00011348899999999999999999999999988554 222 248999999999
Q ss_pred HHHHHHHhcCCccCCceeeeecccccccchh-----hc---------------------------------------ccC
Q 015870 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDT-----EI---------------------------------------NKS 200 (399)
Q Consensus 165 a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~-----~~---------------------------------------~~~ 200 (399)
|..|...|....+....+.+.+......... .. ...
T Consensus 434 Ar~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~ 513 (725)
T KOG0110|consen 434 ARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEE 513 (725)
T ss_pred hHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccc
Confidence 9999999988877777766654432211100 00 000
Q ss_pred CcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCC----CeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEe
Q 015870 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG----KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276 (399)
Q Consensus 201 ~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~ 276 (399)
....||+.|+++.++.+++...|...|.|..+.|....++ .+.|++||+|.+.++|..|+..|+|..++|..|.+.
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 1123999999999999999999999999999988766433 355999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeC-CCCCcccEEEEEeCC
Q 015870 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355 (399)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~-~~~~~~g~afV~f~~ 355 (399)
++...+..... ........+..|+|.|||+.++..+++.+|..||.+.+|+|+.. ..+-++|||||+|-+
T Consensus 594 ~S~~k~~~~~g---------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 594 ISENKPASTVG---------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred eccCccccccc---------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC
Confidence 98721111110 11112334689999999999999999999999999999999887 345579999999999
Q ss_pred HHHHHHHHHHhcCceecCeeEEEEEeeecHH
Q 015870 356 PEEASRALLEMNGKMVVSKPLYVALAQRKED 386 (399)
Q Consensus 356 ~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 386 (399)
..+|.+|+..|.+.++-||.|.++||++...
T Consensus 665 ~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 665 PREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cHHHHHHHHhhcccceechhhheehhccchH
Confidence 9999999999999999999999999997764
No 21
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=6.1e-31 Score=209.30 Aligned_cols=225 Identities=30% Similarity=0.523 Sum_probs=191.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
....+||||+||...+||+-|..+|++.|+|..++++.+ +++|.+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~w 47 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNW 47 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhcccc
Confidence 456799999999999999999999999999999988865 333333
Q ss_pred ccCCccccc---CCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhcCC
Q 015870 100 SHRDPSLRK---SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGM 175 (399)
Q Consensus 100 ~~~~~~~~~---~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~ 175 (399)
+.......+ ...-.++|+.|.+.++.++|++.|.+||+|.+++++++ ..++++||+||.|.+.++|++|+..|+|.
T Consensus 48 a~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq 127 (321)
T KOG0148|consen 48 ATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQ 127 (321)
T ss_pred ccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCe
Confidence 322211111 11346999999999999999999999999999999999 67999999999999999999999999999
Q ss_pred ccCCceeeeecccccccchhhc----------ccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeE
Q 015870 176 LLNDKQVYVGHFLRKQERDTEI----------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245 (399)
Q Consensus 176 ~~~~~~~~v~~~~~~~~~~~~~----------~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~ 245 (399)
-+++|.|+-.|..++....... ..+...+++++|++..+++++++..|++||+|.+++++.+ +|+
T Consensus 128 WlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGY 202 (321)
T KOG0148|consen 128 WLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGY 202 (321)
T ss_pred eeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cce
Confidence 9999999999988775332111 2345578999999999999999999999999999999955 678
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccchHH
Q 015870 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284 (399)
Q Consensus 246 ~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~ 284 (399)
+||.|.+.+.|..|+..+++..+.|..+++.|.+.....
T Consensus 203 aFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 203 AFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred EEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 999999999999999999999999999999998765443
No 22
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=9e-31 Score=229.78 Aligned_cols=170 Identities=29% Similarity=0.529 Sum_probs=153.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
......++|||+|||+++|+++|+++|+.||+|+++.|+.+..+++++|||||+|.+.++|++|+..|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhcCCc
Q 015870 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (399)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 176 (399)
.++.... ......+|+|.|||+++|+++|+++|+.||.|..+.++.+ .++.++++|||+|.+.++|.+|++.|++..
T Consensus 182 ~~a~p~~--~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 259 (346)
T TIGR01659 182 SYARPGG--ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVI 259 (346)
T ss_pred ecccccc--cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCc
Confidence 9886532 2234568999999999999999999999999999999988 478889999999999999999999999998
Q ss_pred cCC--ceeeeecccc
Q 015870 177 LND--KQVYVGHFLR 189 (399)
Q Consensus 177 ~~~--~~~~v~~~~~ 189 (399)
+.+ +.+.|.+...
T Consensus 260 ~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 260 PEGGSQPLTVRLAEE 274 (346)
T ss_pred cCCCceeEEEEECCc
Confidence 866 5666665543
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=2.4e-30 Score=228.08 Aligned_cols=250 Identities=40% Similarity=0.664 Sum_probs=225.3
Q ss_pred eEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeeccccccc
Q 015870 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192 (399)
Q Consensus 113 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~ 192 (399)
.|||+ +++|+..|.++|+.+|.+.++.+..+. + +.|||||.|.++.+|.+|+..++...+.|+.+++.|......
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 58888 899999999999999999999999998 6 999999999999999999999999999999999998754433
Q ss_pred chhhcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 015870 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272 (399)
Q Consensus 193 ~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~ 272 (399)
. ++|.||+++++..+|.+.|+.||.|..|++..+..| ++|+ ||+|++++.|..|+..++|..+.++.
T Consensus 78 ~-----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 78 L-----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred e-----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCe
Confidence 2 999999999999999999999999999999999887 8888 99999999999999999999999999
Q ss_pred eEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEE
Q 015870 273 WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352 (399)
Q Consensus 273 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~ 352 (399)
+.+............... . ...-..+++.|++...+++.|.++|+.||.|.++.++.+..+.+++|+||.
T Consensus 145 i~vg~~~~~~er~~~~~~-~---------~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~ 214 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGE-Y---------KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVN 214 (369)
T ss_pred eEEeeccchhhhcccccc-h---------hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCcccee
Confidence 999988766655433322 1 112246889999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhcCceecCeeEEEEEeeecHHHHHH
Q 015870 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390 (399)
Q Consensus 353 f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~ 390 (399)
|++.++|..|+..|++..+++..+.|.-+..+.++..-
T Consensus 215 f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~ 252 (369)
T KOG0123|consen 215 FENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAE 252 (369)
T ss_pred ecChhHHHHHHHhccCCcCCccceeecccccchhhHHH
Confidence 99999999999999999999999999999886666533
No 24
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.97 E-value=2.4e-29 Score=211.42 Aligned_cols=360 Identities=21% Similarity=0.282 Sum_probs=265.5
Q ss_pred cCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 015870 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (399)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~ 86 (399)
.+.............+++.|-+||||++++|+||.+++.+||.|+++...+.+. .||++|.+.++|..-+....
T Consensus 12 ~~~~kf~~~~~~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~ 85 (492)
T KOG1190|consen 12 NDSKKFKYTQRSMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYT 85 (492)
T ss_pred CCCCCcccccccccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeeccc
Confidence 344444444556677999999999999999999999999999999999987654 89999999999988555443
Q ss_pred CC--CCCCcccEEeeccCC-------cc---------------------cc--cC-----CC---ceEEEcCCCcccCHH
Q 015870 87 FT--PLNGKPIRVMYSHRD-------PS---------------------LR--KS-----GA---GNIFIKNLDKAIDHK 126 (399)
Q Consensus 87 ~~--~~~g~~i~v~~~~~~-------~~---------------------~~--~~-----~~---~~l~v~nlp~~~t~~ 126 (399)
.. .+.|.+|.|+++.-. +. .. .. .. =.+++.|+-..++-+
T Consensus 86 ~~~p~lr~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslD 165 (492)
T KOG1190|consen 86 SVTPVLRGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLD 165 (492)
T ss_pred ccCccccCcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHH
Confidence 32 367888888876411 00 00 00 00 136689999999999
Q ss_pred HHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCc--eeeeecccc----------cccch
Q 015870 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK--QVYVGHFLR----------KQERD 194 (399)
Q Consensus 127 ~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~--~~~v~~~~~----------~~~~~ 194 (399)
-|.++|++||.|..+.-+...++. .|+|+|.+...|..|...|+|..+.+. .+++.+... +....
T Consensus 166 VLHqvFS~fG~VlKIiTF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDy 242 (492)
T KOG1190|consen 166 VLHQVFSKFGFVLKIITFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDY 242 (492)
T ss_pred HHHHHHhhcceeEEEEEEecccch---hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccc
Confidence 999999999999887766654333 599999999999999999999877543 444432211 10000
Q ss_pred hh------------------------------c---------------ccCC--cceEEeecC-CcCccHHHHHHHhccc
Q 015870 195 TE------------------------------I---------------NKSK--FTNVYVKNL-SESTTEEDLQKSFGEY 226 (399)
Q Consensus 195 ~~------------------------------~---------------~~~~--~~~l~i~~l-~~~~~~~~l~~~f~~~ 226 (399)
.. . -..+ ...|.+.|+ +..+|.+.|..+|.-|
T Consensus 243 Tnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvY 322 (492)
T KOG1190|consen 243 TNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVY 322 (492)
T ss_pred cCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhh
Confidence 00 0 0011 244677777 4558999999999999
Q ss_pred CCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHHHHHH--------------
Q 015870 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF-------------- 292 (399)
Q Consensus 227 g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~~~~~-------------- 292 (399)
|.|..+.++..+.. .|.|.|.+..+|.-|++.|.|..+.|+.|++.+++-............
T Consensus 323 GdVqRVkil~nkkd----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhr 398 (492)
T KOG1190|consen 323 GDVQRVKILYNKKD----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHR 398 (492)
T ss_pred cceEEEEeeecCCc----ceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhh
Confidence 99999999987543 599999999999999999999999999999998854433222211100
Q ss_pred --HHhhHHh-hhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEE-EEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 015870 293 --EQNMKEA-ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC-KVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368 (399)
Q Consensus 293 --~~~~~~~-~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v-~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 368 (399)
....... ...+++.++.+.|+|.+++++|++.+|..-|...+. ++.. +.+-+|.+.++++|+|..|+..+|+
T Consensus 399 fkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~----kd~kmal~q~~sveeA~~ali~~hn 474 (492)
T KOG1190|consen 399 FKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ----KDRKMALPQLESVEEAIQALIDLHN 474 (492)
T ss_pred ccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC----CCcceeecccCChhHhhhhcccccc
Confidence 0000111 123678899999999999999999999888866544 3322 2355899999999999999999999
Q ss_pred ceecCe-eEEEEEeee
Q 015870 369 KMVVSK-PLYVALAQR 383 (399)
Q Consensus 369 ~~~~g~-~l~v~~a~~ 383 (399)
..+++. .|+|+|+++
T Consensus 475 h~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 475 HYLGENHHLRVSFSKS 490 (492)
T ss_pred ccCCCCceEEEEeecc
Confidence 999765 999999985
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=5.3e-29 Score=218.67 Aligned_cols=172 Identities=33% Similarity=0.551 Sum_probs=153.9
Q ss_pred cCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEec
Q 015870 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277 (399)
Q Consensus 199 ~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~ 277 (399)
....++|||++||+++++++|.++|+.||.|..+.++.+ ..+.++++|||+|.+.++|..|+..|++..+.++.|.+.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 445688999999999999999999999999999999877 5688899999999999999999999999999999999998
Q ss_pred cccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCH
Q 015870 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTP 356 (399)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~ 356 (399)
+.+... .....+|||.|||..++++||+++|++||.|+.++++++. +++++|+|||+|.+.
T Consensus 184 a~p~~~------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 184 ARPGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred cccccc------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 764221 1234689999999999999999999999999999998876 788999999999999
Q ss_pred HHHHHHHHHhcCceecC--eeEEEEEeeecHHHH
Q 015870 357 EEASRALLEMNGKMVVS--KPLYVALAQRKEDRR 388 (399)
Q Consensus 357 ~~A~~A~~~l~~~~~~g--~~l~v~~a~~~~~~~ 388 (399)
++|.+|++.||+..+.+ ++|+|.+|+++...+
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCcccccc
Confidence 99999999999999865 799999999765544
No 26
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.96 E-value=2.5e-29 Score=219.98 Aligned_cols=328 Identities=22% Similarity=0.322 Sum_probs=233.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
..++..++++.--|+..+++.+|++||+.+|.|-+|.++.++.+++++|.|||+|.+.++...|+. |.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 447788999999999999999999999999999999999999999999999999999999999996 8999999999999
Q ss_pred eeccCCccc--------c----cCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCC-CCCceeEEEEEecCHHH
Q 015870 98 MYSHRDPSL--------R----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEES 164 (399)
Q Consensus 98 ~~~~~~~~~--------~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~v~f~~~~~ 164 (399)
+.+.....- . ...-..|||+||-.+++++.++.+|++||.|+.+.+..+. +|.++||+||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 876432111 0 1111239999999999999999999999999999999995 89999999999999999
Q ss_pred HHHHHHHhcCCccCCceeeeecccccccchhh-cccCCcceEEeecCCcCcc-HHHHHHHhcccCCeeEEEEEECCCCCe
Q 015870 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE-INKSKFTNVYVKNLSESTT-EEDLQKSFGEYGTITSAVVMRDGDGKS 242 (399)
Q Consensus 165 a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~l~i~~l~~~~~-~~~l~~~f~~~g~v~~~~~~~~~~~~~ 242 (399)
|..|+..|+|+.+.|+.|+|............ .........-..+|+.... ..++...|...-.+. ++
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~---~~------- 402 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRS---LP------- 402 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCcc---cc-------
Confidence 99999999999999999999877665443322 1111111111223333221 233333333221111 11
Q ss_pred eeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCC----
Q 015870 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID---- 318 (399)
Q Consensus 243 ~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~---- 318 (399)
.+...+..++..+......+....+.-..|... .+.-.+++.|+.+.|+=...+
T Consensus 403 --------s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~--------------~p~~~i~t~C~lL~nMFdpstete~ 460 (549)
T KOG0147|consen 403 --------STAISALLLLAKLASAAQFNGVVRVRSVDPADA--------------SPAFDIPTQCLLLSNMFDPSTETEP 460 (549)
T ss_pred --------chhhhHHHhccccchHHhhcCCcCccccCcccc--------------ccccCCccHHHHHhhcCCcccccCc
Confidence 011122222221111111111111111111000 011126777888888843222
Q ss_pred ------HHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 319 ------DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 319 ------~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
.+|+.+-+.+||.|..|.+.+. +-|+.+|.|.+.++|..|+.+|||.||.||-|+..|=.
T Consensus 461 n~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 461 NWDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred chhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 1688899999999999987665 34899999999999999999999999999999998843
No 27
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.96 E-value=6.4e-27 Score=198.51 Aligned_cols=237 Identities=19% Similarity=0.241 Sum_probs=194.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHh-ccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccC
Q 015870 24 TSLYVGDLEANVTDSQLYDLFN-QMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~-~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (399)
+.+||+|||+++...+|+++|. +.|.|+.|.++.| ..|+++|+|.|+|+++|.+++|++.|+...+.|++|.|.-.+.
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 4599999999999999999997 5689999999999 4799999999999999999999999999999999999987654
Q ss_pred Cccccc----CCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC
Q 015870 103 DPSLRK----SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178 (399)
Q Consensus 103 ~~~~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 178 (399)
..-... ......++.++...+-+..|...++.-|......+..+.++.+++..+++|++.-.+..++.-+......
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 322111 2235688999999999999999998888887778888888889999999999888888887754443333
Q ss_pred CceeeeecccccccchhhcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHH
Q 015870 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258 (399)
Q Consensus 179 ~~~~~v~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~ 258 (399)
.+.+.+ ...+...+++|.||...+....|.+.|.-.|.+..+.+.-++.+.++|++.++|.+.-.|-.
T Consensus 204 lr~~h~------------f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavq 271 (608)
T KOG4212|consen 204 LRSLHI------------FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQ 271 (608)
T ss_pred hhhccC------------CCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHH
Confidence 333332 12334467899999999999999999999999999988888888899999999999999999
Q ss_pred HHHHhCCCccCCcee
Q 015870 259 AVEALNGKKFDDKEW 273 (399)
Q Consensus 259 a~~~l~g~~~~~~~l 273 (399)
|+..+.+.-+.+++.
T Consensus 272 aIsml~~~g~~~~~~ 286 (608)
T KOG4212|consen 272 AISMLDRQGLFDRRM 286 (608)
T ss_pred HHHhhccCCCccccc
Confidence 999888644444433
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=3.5e-27 Score=217.62 Aligned_cols=179 Identities=23% Similarity=0.434 Sum_probs=151.9
Q ss_pred CCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEecc
Q 015870 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278 (399)
Q Consensus 200 ~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~ 278 (399)
....+|||+|||+.+++++|+++|..||.|..+.+..+ ..+.++|+|||+|.+.++|..|+..++|..+.|+.|.+...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34578999999999999999999999999999999877 56889999999999999999999999999999999999854
Q ss_pred ccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHH
Q 015870 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357 (399)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~ 357 (399)
.......... . .........++|||+|||+.+++++|+++|+.||.|.++++.++. .++++|||||+|.+.+
T Consensus 185 ~~~p~a~~~~-----~--~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 185 SNMPQAQPII-----D--MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred cccccccccc-----c--cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 3221100000 0 000112234789999999999999999999999999999999886 5779999999999999
Q ss_pred HHHHHHHHhcCceecCeeEEEEEeeecH
Q 015870 358 EASRALLEMNGKMVVSKPLYVALAQRKE 385 (399)
Q Consensus 358 ~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 385 (399)
+|.+|+..||+..++|+.|+|.++.+..
T Consensus 258 ~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 9999999999999999999999988643
No 29
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=9e-27 Score=193.25 Aligned_cols=167 Identities=25% Similarity=0.478 Sum_probs=150.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeecc
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (399)
-.|+|||+.|...+.|+.|+..|..||+|.+|.+.-|.-+++.+|||||+|+-++.|+-|++.+|+..++||-|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred CCccc---------ccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCC-CCceeEEEEEecCHHHHHHHHHH
Q 015870 102 RDPSL---------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEK 171 (399)
Q Consensus 102 ~~~~~---------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~-~~~~g~a~v~f~~~~~a~~a~~~ 171 (399)
.-+.. ....-+++||..+.++.++++|+..|+.||.|..|.+-..++ +..+||+|++|.+..+...|+..
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 43221 112346799999999999999999999999999999999954 66899999999999999999999
Q ss_pred hcCCccCCceeeeeccc
Q 015870 172 LNGMLLNDKQVYVGHFL 188 (399)
Q Consensus 172 l~~~~~~~~~~~v~~~~ 188 (399)
||-+.++|+.+++-.+.
T Consensus 272 MNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCV 288 (544)
T ss_pred cchhhcccceEeccccc
Confidence 99999999999985544
No 30
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=8.1e-26 Score=204.68 Aligned_cols=171 Identities=34% Similarity=0.541 Sum_probs=149.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC--cccEEe
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG--KPIRVM 98 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g--~~i~v~ 98 (399)
...++|||+|||.++++++|+++|++||.|..+.++.+..++.++|+|||+|.+.++|++|+..|++..+.| ..+.+.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 356789999999999999999999999999999999998889999999999999999999999999998876 456776
Q ss_pred eccCCccc------------------c-----------------------------------------------------
Q 015870 99 YSHRDPSL------------------R----------------------------------------------------- 107 (399)
Q Consensus 99 ~~~~~~~~------------------~----------------------------------------------------- 107 (399)
++...... .
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 65321100 0
Q ss_pred -------------------cCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCC-CCCceeEEEEEecCHHHHHH
Q 015870 108 -------------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQK 167 (399)
Q Consensus 108 -------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~v~f~~~~~a~~ 167 (399)
......|+|+|||+++++++|+++|+.||.|..+.++.+. ++.++|||||+|.+.++|..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0011259999999999999999999999999999999994 89999999999999999999
Q ss_pred HHHHhcCCccCCceeeeecccccc
Q 015870 168 AIEKLNGMLLNDKQVYVGHFLRKQ 191 (399)
Q Consensus 168 a~~~l~~~~~~~~~~~v~~~~~~~ 191 (399)
|++.|+|..+.|+.|.|.+...+.
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCC
Confidence 999999999999999999876543
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.6e-26 Score=196.00 Aligned_cols=173 Identities=31% Similarity=0.574 Sum_probs=149.4
Q ss_pred CcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCc-cCCc--eeEEe
Q 015870 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKK-FDDK--EWYVG 276 (399)
Q Consensus 201 ~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~-~~~~--~l~v~ 276 (399)
..-++||+-+|..+++.||+++|++||.|.+|.++++ ..+.++|+|||.|.+.++|.+|+..++... +.|. ++.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 3456999999999999999999999999999999988 457899999999999999999999998765 5664 55555
Q ss_pred ccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCH
Q 015870 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356 (399)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~ 356 (399)
++...... .+..++|||+-|++.++|.|++++|++||.|++|+|++++++.+||||||.|.+.
T Consensus 113 ~Ad~E~er-----------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 113 YADGERER-----------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTK 175 (510)
T ss_pred ccchhhhc-----------------cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehH
Confidence 55432221 1345789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcee-c--CeeEEEEEeeecHHHHHH
Q 015870 357 EEASRALLEMNGKMV-V--SKPLYVALAQRKEDRRAR 390 (399)
Q Consensus 357 ~~A~~A~~~l~~~~~-~--g~~l~v~~a~~~~~~~~~ 390 (399)
+.|..|++.||+..- . ..+|.|+||.+++++.-+
T Consensus 176 e~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 176 EMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred HHHHHHHHhhccceeeccCCCceEEEecccCCCchHH
Confidence 999999999998654 3 569999999988877633
No 32
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.94 E-value=2.4e-25 Score=200.47 Aligned_cols=263 Identities=25% Similarity=0.399 Sum_probs=215.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
..+..+.|+|+|||..+..++|.++|..||+|..+.+... |. .|+|.|.++.+|.+|+..|....+...++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 5677799999999999999999999999999999966532 22 69999999999999999999888877777666
Q ss_pred eccCCccc------------------------------------------------ccCCCceEEEcCCCcccCHHHHHH
Q 015870 99 YSHRDPSL------------------------------------------------RKSGAGNIFIKNLDKAIDHKALHD 130 (399)
Q Consensus 99 ~~~~~~~~------------------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~ 130 (399)
+++.+... .....+.||+.||++.++.+++..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 64321000 000112399999999999999999
Q ss_pred HhcccCCeEEEEEeeCCCC----CceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeeccccccc---chhhcccCCcc
Q 015870 131 TFSAFGNILSCKVATDLNG----QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE---RDTEINKSKFT 203 (399)
Q Consensus 131 ~f~~~g~v~~~~~~~~~~~----~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~ 203 (399)
.|...|.|..+.|....++ .+.|||||+|.++++|..|++.|+|+.+.|+.+.+..+..... ..........+
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~t 614 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGT 614 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccc
Confidence 9999999999988887554 3559999999999999999999999999999999887662111 11112223357
Q ss_pred eEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccch
Q 015870 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282 (399)
Q Consensus 204 ~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~ 282 (399)
.|+|.|+|+..+..+++.+|..||.+..++++.. ..+..+|++||.|.+..+|.+|+..|....+-|+++.+.|+....
T Consensus 615 KIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 615 KILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred eeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 8999999999999999999999999999999877 445568999999999999999999999999999999999997665
Q ss_pred HHHHH
Q 015870 283 ERELE 287 (399)
Q Consensus 283 ~~~~~ 287 (399)
.....
T Consensus 695 ~~e~~ 699 (725)
T KOG0110|consen 695 TMEAL 699 (725)
T ss_pred HHHHH
Confidence 54333
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=5e-25 Score=206.31 Aligned_cols=176 Identities=30% Similarity=0.505 Sum_probs=150.5
Q ss_pred CcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccc
Q 015870 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (399)
Q Consensus 201 ~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~ 279 (399)
...+|||+|||..+++++|.++|+.||.|..+.++.+ ..+.++|+|||+|.+.++|.+|+. ++|..+.|+.|.+....
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 4578999999999999999999999999999999887 557889999999999999999996 99999999999998764
Q ss_pred cchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHH
Q 015870 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358 (399)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~ 358 (399)
.......... .......+..++|||+|||+.+++++|+++|++||.|.+|.+..+. .|+++|||||+|.+.++
T Consensus 167 ~~~~~~~~~~------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 167 AEKNRAAKAA------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred hhhhhhhhcc------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 3322211100 0011112347899999999999999999999999999999998876 46899999999999999
Q ss_pred HHHHHHHhcCceecCeeEEEEEeee
Q 015870 359 ASRALLEMNGKMVVSKPLYVALAQR 383 (399)
Q Consensus 359 A~~A~~~l~~~~~~g~~l~v~~a~~ 383 (399)
|.+|+..|||..+.|++|+|.|+..
T Consensus 241 A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 241 AKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999999763
No 34
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.92 E-value=1.2e-23 Score=182.15 Aligned_cols=353 Identities=15% Similarity=0.212 Sum_probs=245.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
.....-.|.+++|||++|++||.+||+.++ |.++.+.+. +|+.+|-|||+|.+.+++++|++ .+...+..+.|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 456677899999999999999999999995 788766654 79999999999999999999999 48888899999998
Q ss_pred eccCCc---------ccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEE-EEEeeCCCCCceeEEEEEecCHHHHHHH
Q 015870 99 YSHRDP---------SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKVATDLNGQSKGYGFVQFDNEESAQKA 168 (399)
Q Consensus 99 ~~~~~~---------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~-~~~~~~~~~~~~g~a~v~f~~~~~a~~a 168 (399)
.+...+ .........|.+++||+.+|+++|.++|+..-.+.. +.++.+..+++.|-|||+|++.+.|+.|
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIA 161 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHH
Confidence 774332 111134567999999999999999999998766655 4466667888999999999999999999
Q ss_pred HHHhcCCccCCceeeeecccccccchh-------------------------------------h---------------
Q 015870 169 IEKLNGMLLNDKQVYVGHFLRKQERDT-------------------------------------E--------------- 196 (399)
Q Consensus 169 ~~~l~~~~~~~~~~~v~~~~~~~~~~~-------------------------------------~--------------- 196 (399)
+.. +...+..+.|.|-.+........ .
T Consensus 162 l~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~ 240 (510)
T KOG4211|consen 162 LGR-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYP 240 (510)
T ss_pred HHH-HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCc
Confidence 985 44455555554421110000000 0
Q ss_pred --------------------cc---------------cCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCC
Q 015870 197 --------------------IN---------------KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241 (399)
Q Consensus 197 --------------------~~---------------~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~ 241 (399)
.. ......+...+||...+..+|.++|+..-.+ .+.+.-..++.
T Consensus 241 ~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr 319 (510)
T KOG4211|consen 241 SLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGR 319 (510)
T ss_pred cccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCc
Confidence 00 0000336778999999999999999976544 66666667888
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHHHH------------H----HHHhh---------
Q 015870 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH------------Q----FEQNM--------- 296 (399)
Q Consensus 242 ~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~~~------------~----~~~~~--------- 296 (399)
.+|.|+|+|.+.++|..|+.. .+..+..+-+................. . ...+.
T Consensus 320 ~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~g~~~gG~~g~~~ 398 (510)
T KOG4211|consen 320 ATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNGAPGASGGGGPSGPGGVGSSGDRNGGGGYASGSYGGGGNGGGG 398 (510)
T ss_pred cCCcceeecccchhhHhhhcc-CCcccCcceeeecccCCcccccCccCCCCCCccccccccCCCCccccccccCCCCCcc
Confidence 999999999999999999752 333333333322221110000000000 0 00000
Q ss_pred -----HH--------------------hhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEE
Q 015870 297 -----KE--------------------AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351 (399)
Q Consensus 297 -----~~--------------------~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV 351 (399)
.. -.+......+...++|...++.|..++|.+++ .-.+.+..+......+.|-|
T Consensus 399 ~~~~~G~~~~~~~~~~~~Gy~g~~~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~~~~-~a~~~~~yd~~~~~~~~a~~ 477 (510)
T KOG4211|consen 399 RGSPYGRPSDGYSSPGGGGYSGPRGYGRGPQNEHFVIRMRGAPFRASEADVYDFFHPIR-PAQVELLYDHQFQRSGDARV 477 (510)
T ss_pred ccCCCCCCcccccCCCCCCCcCcccCCCCccccccccCcCCCCccccccchhhcccccC-cccccccccccccccCceeE
Confidence 00 00111234578888999999999999999986 44677777766666788999
Q ss_pred EeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 352 AFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 352 ~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
.|-+.++++.|+. -+...+..+.|.+-|
T Consensus 478 ~~~~~~~~q~a~~-~~~~~~~~~~~~~~y 505 (510)
T KOG4211|consen 478 IFYNRKDYQDALM-KDKQYMGERYIEMIY 505 (510)
T ss_pred EEechhhhHHHHH-hhhhhhhhhhhhhhc
Confidence 9999999999994 455555655555444
No 35
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.92 E-value=4.7e-22 Score=165.79 Aligned_cols=353 Identities=18% Similarity=0.176 Sum_probs=260.9
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCCCCCcc
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN--FTPLNGKP 94 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~--~~~~~g~~ 94 (399)
+..+..+..|-||+|-..++|.||.+.++.||+|..+..+..++ .|.|+|++.+.|+.++...- ...+.|..
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCch
Confidence 55688899999999999999999999999999998888776554 89999999999999998632 33566776
Q ss_pred cEEeeccCCccccc----CCCce---EEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHH
Q 015870 95 IRVMYSHRDPSLRK----SGAGN---IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQK 167 (399)
Q Consensus 95 i~v~~~~~~~~~~~----~~~~~---l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~ 167 (399)
--+.++.+..-.+. ...+. +.|-|--..+|.+-|..+....|.|..+.+++. +.-.|.|+|.+.+.|.+
T Consensus 99 Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----ngVQAmVEFdsv~~Aqr 174 (494)
T KOG1456|consen 99 ALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----NGVQAMVEFDSVEVAQR 174 (494)
T ss_pred hhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----cceeeEEeechhHHHHH
Confidence 66666643322111 11122 335566677899999999999999999999886 34469999999999999
Q ss_pred HHHHhcCCcc--CCceeeeecccccccchhhc------------------------------------------------
Q 015870 168 AIEKLNGMLL--NDKQVYVGHFLRKQERDTEI------------------------------------------------ 197 (399)
Q Consensus 168 a~~~l~~~~~--~~~~~~v~~~~~~~~~~~~~------------------------------------------------ 197 (399)
|...|+|..+ +++.|++++..+....-...
T Consensus 175 Ak~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~s 254 (494)
T KOG1456|consen 175 AKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYS 254 (494)
T ss_pred HHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcc
Confidence 9999999766 56677776655421100000
Q ss_pred ----------------------------ccCCcceEEeecCCcC-ccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEE
Q 015870 198 ----------------------------NKSKFTNVYVKNLSES-TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248 (399)
Q Consensus 198 ----------------------------~~~~~~~l~i~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v 248 (399)
...+...+.|.+|... ++-+.|.++|-.||+|..+.......+ .|.|
T Consensus 255 g~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g----tamV 330 (494)
T KOG1456|consen 255 GDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG----TAMV 330 (494)
T ss_pred cccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc----eeEE
Confidence 0011123778888654 677999999999999999999876544 6999
Q ss_pred EeCCHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHH----------H---HHH------HHhhHHhhhccCCceEE
Q 015870 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL----------K---HQF------EQNMKEAADKFQGANLY 309 (399)
Q Consensus 249 ~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~----------~---~~~------~~~~~~~~~~~~~~~l~ 309 (399)
++.+....++|+..|++..+-|..|.+..+...-..+... . .+. ..........+++++|.
T Consensus 331 emgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLH 410 (494)
T KOG1456|consen 331 EMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLH 410 (494)
T ss_pred EcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeE
Confidence 9999999999999999999999999888774332211100 0 000 00011123357889999
Q ss_pred EecCCCcCCHHHHHHhhcCcC-CceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe------eEEEEEee
Q 015870 310 IKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK------PLYVALAQ 382 (399)
Q Consensus 310 v~nl~~~~~~~dl~~~f~~~G-~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~------~l~v~~a~ 382 (399)
.-|-|..+||+.|.++|..-+ ...++++....+.++. .+.++|++.++|..|+..+|-..+.+. .|++-|+.
T Consensus 411 ffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserSs-sGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfst 489 (494)
T KOG1456|consen 411 FFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERSS-SGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFST 489 (494)
T ss_pred EecCCCccCHHHHHHHhhhcCCCcceEEeecccccccc-cceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecc
Confidence 999999999999999996554 3567888777655544 689999999999999999999998643 45555555
Q ss_pred ec
Q 015870 383 RK 384 (399)
Q Consensus 383 ~~ 384 (399)
++
T Consensus 490 s~ 491 (494)
T KOG1456|consen 490 SK 491 (494)
T ss_pred cc
Confidence 54
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=2.3e-24 Score=161.96 Aligned_cols=172 Identities=35% Similarity=0.643 Sum_probs=150.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
-....+|||+||+..++++-|.++|-+.|+|+++.+.+++-+....||||++|.+.++|+-|++.|+...+.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999998889999999998
Q ss_pred ccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEE-EEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhcCCcc
Q 015870 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177 (399)
Q Consensus 100 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~-~~~~~~~-~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~ 177 (399)
+... ...-.....++|+||.+++++..|.+.|+.||.+.. ..++.++ .+.++++||+.|++.+.+.+|+..+++..+
T Consensus 86 as~~-~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l 164 (203)
T KOG0131|consen 86 ASAH-QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL 164 (203)
T ss_pred cccc-cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh
Confidence 8732 222233467999999999999999999999997754 3455554 477889999999999999999999999999
Q ss_pred CCceeeeeccccccc
Q 015870 178 NDKQVYVGHFLRKQE 192 (399)
Q Consensus 178 ~~~~~~v~~~~~~~~ 192 (399)
.++.+.+.+...+..
T Consensus 165 ~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 165 CNRPITVSYAFKKDT 179 (203)
T ss_pred cCCceEEEEEEecCC
Confidence 999999987765433
No 37
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.1e-23 Score=167.03 Aligned_cols=165 Identities=35% Similarity=0.631 Sum_probs=150.1
Q ss_pred cceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEecccc
Q 015870 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (399)
Q Consensus 202 ~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~ 280 (399)
..+|+|.-||..++.++++++|...|.|+.|+++++ -.|++-|++||.|-++++|.+|+..++|..+..+.|+|+++.|
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 367999999999999999999999999999999998 5689999999999999999999999999999999999999987
Q ss_pred chHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHH
Q 015870 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEA 359 (399)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A 359 (399)
..... ....|||++||..++..+|+.+|++||.|+--+|+.+. +|.++|.+||.|+...+|
T Consensus 121 Ss~~I------------------k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EA 182 (360)
T KOG0145|consen 121 SSDSI------------------KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEA 182 (360)
T ss_pred Chhhh------------------cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHH
Confidence 55432 34679999999999999999999999999888887776 899999999999999999
Q ss_pred HHHHHHhcCceec--CeeEEEEEeeec
Q 015870 360 SRALLEMNGKMVV--SKPLYVALAQRK 384 (399)
Q Consensus 360 ~~A~~~l~~~~~~--g~~l~v~~a~~~ 384 (399)
..|++.|||..=- ..+|.|.||..-
T Consensus 183 e~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 183 EEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred HHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 9999999998664 469999999843
No 38
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=1.5e-23 Score=157.64 Aligned_cols=172 Identities=33% Similarity=0.544 Sum_probs=150.1
Q ss_pred cCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECC-CCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEec
Q 015870 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277 (399)
Q Consensus 199 ~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~ 277 (399)
.....++|++||+..++++.|.++|-+.|+|.++.++.+. .....|+||++|.++++|..|++-|+...+-|++|++..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 3455889999999999999999999999999999999883 345789999999999999999999999999999999988
Q ss_pred cccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEE-EEeeCC-CCCcccEEEEEeCC
Q 015870 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC-KVMRDP-SGISRGSGFVAFST 355 (399)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v-~~~~~~-~~~~~g~afV~f~~ 355 (399)
+.... .+...+..++|+||.+.+++.-|.+.|+.||.+.+. ++++++ +|.++|++||.|.+
T Consensus 86 as~~~-----------------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 86 ASAHQ-----------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred ccccc-----------------ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechh
Confidence 76111 122344689999999999999999999999988763 667776 58899999999999
Q ss_pred HHHHHHHHHHhcCceecCeeEEEEEeeecHHH
Q 015870 356 PEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387 (399)
Q Consensus 356 ~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 387 (399)
.+.+.+|+..+||..+++++|+|+|+..+..+
T Consensus 149 feasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 149 FEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 99999999999999999999999999865543
No 39
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=5.7e-22 Score=158.01 Aligned_cols=189 Identities=33% Similarity=0.520 Sum_probs=155.1
Q ss_pred CcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCc-cC--CceeEEec
Q 015870 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK-FD--DKEWYVGK 277 (399)
Q Consensus 201 ~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~-~~--~~~l~v~~ 277 (399)
+.++|||+-|...-.+||++.+|..||.+.+|.+.+..+|.++|++||+|.+.-+|..|++.|+|.. +. ...+.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5578999999999999999999999999999999999999999999999999999999999999865 33 46777777
Q ss_pred cccchHHHHHHHHHHH-H--------------------------------------h----------------h------
Q 015870 278 AQKKSERELELKHQFE-Q--------------------------------------N----------------M------ 296 (399)
Q Consensus 278 ~~~~~~~~~~~~~~~~-~--------------------------------------~----------------~------ 296 (399)
+.....+....-+... . + .
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 7443222111000000 0 0 0
Q ss_pred --------------------------------------------------------------------------------
Q 015870 297 -------------------------------------------------------------------------------- 296 (399)
Q Consensus 297 -------------------------------------------------------------------------------- 296 (399)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred -------------------HHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCH
Q 015870 297 -------------------KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTP 356 (399)
Q Consensus 297 -------------------~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~ 356 (399)
.....++.+|.|||.+||.+..+.+|-.+|-+||.|++.++..++ ++.+++|+||.|++.
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 000123456779999999999999999999999999999876665 788999999999999
Q ss_pred HHHHHHHHHhcCceecCeeEEEEEeeecHHHHH
Q 015870 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389 (399)
Q Consensus 357 ~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~ 389 (399)
.+|++||..+||+.|+-++|+|.+.|||+..|+
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanRP 370 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRP 370 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCCC
Confidence 999999999999999999999999999987763
No 40
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=2.3e-22 Score=162.29 Aligned_cols=148 Identities=23% Similarity=0.508 Sum_probs=137.0
Q ss_pred ceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccch
Q 015870 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282 (399)
Q Consensus 203 ~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~ 282 (399)
.+|||+|||...++.+|+.+|.+||.|.+|.|+.+ ++||..++...+..|+..|++..++|..|.|.-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc-
Confidence 45899999999999999999999999999999854 8999999999999999999999999999999877643
Q ss_pred HHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHH
Q 015870 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362 (399)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A 362 (399)
.-.+.+|+|+||.+.++.++|+..|++||.|+.+.|+++ |+||.|+-.++|..|
T Consensus 75 -------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 75 -------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEA 128 (346)
T ss_pred -------------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHH
Confidence 124678999999999999999999999999999999887 999999999999999
Q ss_pred HHHhcCceecCeeEEEEEeeec
Q 015870 363 LLEMNGKMVVSKPLYVALAQRK 384 (399)
Q Consensus 363 ~~~l~~~~~~g~~l~v~~a~~~ 384 (399)
++.|+|..|+|++|+|+++-++
T Consensus 129 ir~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 129 IRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred Hhcccccccccceeeeeeeccc
Confidence 9999999999999999997654
No 41
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=7.1e-22 Score=159.50 Aligned_cols=151 Identities=26% Similarity=0.512 Sum_probs=139.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccCC
Q 015870 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (399)
-.|||+|||.++++.+|+.+|++||.|+++.|++. |+||-.++...|..|+..||+..+.|.-|+|+.++..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46899999999999999999999999999999986 9999999999999999999999999999999988765
Q ss_pred cccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceee
Q 015870 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183 (399)
Q Consensus 104 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 183 (399)
...+.+|.|+||.+.++..+++..|+.||.|.++.+.++ |+||.|.-.++|..|+..|+|..+.|+.+.
T Consensus 75 ----sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 75 ----SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred ----CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccccccceee
Confidence 334678999999999999999999999999999999854 999999999999999999999999999999
Q ss_pred eecccccccc
Q 015870 184 VGHFLRKQER 193 (399)
Q Consensus 184 v~~~~~~~~~ 193 (399)
|....+....
T Consensus 144 vq~stsrlrt 153 (346)
T KOG0109|consen 144 VQLSTSRLRT 153 (346)
T ss_pred eeeecccccc
Confidence 9887765443
No 42
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.84 E-value=1.5e-19 Score=156.96 Aligned_cols=264 Identities=19% Similarity=0.250 Sum_probs=193.5
Q ss_pred CceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeeccccc
Q 015870 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190 (399)
Q Consensus 111 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~ 190 (399)
..-|.+++|||+.|+++|.++|+.+ .|+++.+.+ .++++.|-|||+|.+.+++..|++ .+...+..+.|.|-.....
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR-RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec-cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 3458899999999999999999986 576644443 468889999999999999999998 4667777888877544332
Q ss_pred ccchh-----hcccCCcceEEeecCCcCccHHHHHHHhcccCCeeE-EEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 015870 191 QERDT-----EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS-AVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264 (399)
Q Consensus 191 ~~~~~-----~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~ 264 (399)
..... .........+.+.+||++++++||.++|+..-.+.. +.++.+..+++.|.|||.|++.+.|++|+. -+
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rh 165 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RH 165 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HH
Confidence 22111 111134467899999999999999999998876666 556666778899999999999999999986 34
Q ss_pred CCccCCceeEEeccccchHHHHHHHH--------HHHH---------------h-----------------------hH-
Q 015870 265 GKKFDDKEWYVGKAQKKSERELELKH--------QFEQ---------------N-----------------------MK- 297 (399)
Q Consensus 265 g~~~~~~~l~v~~~~~~~~~~~~~~~--------~~~~---------------~-----------------------~~- 297 (399)
...+..+-|.+..+............ +... . ..
T Consensus 166 re~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~ 245 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDY 245 (510)
T ss_pred HHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccc
Confidence 44555566655554333332222000 0000 0 00
Q ss_pred -------------------Hh--------hh-ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEE
Q 015870 298 -------------------EA--------AD-KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349 (399)
Q Consensus 298 -------------------~~--------~~-~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~a 349 (399)
.. .. ...+..+..++||+..++.||.++|+.. ....|.|...++|+.+|-|
T Consensus 246 ~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-~p~~v~i~ig~dGr~TGEA 324 (510)
T KOG4211|consen 246 GNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-NPYRVHIEIGPDGRATGEA 324 (510)
T ss_pred ccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-CceeEEEEeCCCCccCCcc
Confidence 00 00 0112568999999999999999999986 4558899999999999999
Q ss_pred EEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 350 fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
.|+|.|.+||..|+ .-++..++.+.|.+..
T Consensus 325 dveF~t~edav~Am-skd~anm~hrYVElFl 354 (510)
T KOG4211|consen 325 DVEFATGEDAVGAM-GKDGANMGHRYVELFL 354 (510)
T ss_pred eeecccchhhHhhh-ccCCcccCcceeeecc
Confidence 99999999999999 5588888888887654
No 43
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.83 E-value=7e-20 Score=156.05 Aligned_cols=248 Identities=21% Similarity=0.247 Sum_probs=204.1
Q ss_pred CceEEEcCCCcccCHHHHHHHhcc-cCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeecccc
Q 015870 111 AGNIFIKNLDKAIDHKALHDTFSA-FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189 (399)
Q Consensus 111 ~~~l~v~nlp~~~t~~~l~~~f~~-~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~ 189 (399)
.+.+||+|||+++.|.+|++++.. -|+|+.|.++.+.+++++|+|.|+|++++.+++|++.|+...+.|+.|.+.-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 456999999999999999999955 5799999999999999999999999999999999999999999999999976554
Q ss_pred cccchhhcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccC
Q 015870 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD 269 (399)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~ 269 (399)
.+..............++.++-...-..-+...+.--|.+..-.+..+.++.+++..++.|++.-.+..++.-+.....-
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 33322222233345678888888888888888888777766666777778888888999998877777777655544444
Q ss_pred CceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEE
Q 015870 270 DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349 (399)
Q Consensus 270 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~a 349 (399)
.++++. +.+ +-..+++|.||.+.+..+.|+..|--.|.|+++.+..++.|.++|+|
T Consensus 204 lr~~h~-f~p-----------------------Pl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~ 259 (608)
T KOG4212|consen 204 LRSLHI-FSP-----------------------PLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFA 259 (608)
T ss_pred hhhccC-CCC-----------------------CccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCee
Confidence 444443 222 23457999999999999999999999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 350 fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
.++|.++-+|..|+..+++..+..++..+.+.+
T Consensus 260 vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 260 VIEYDHPVEAVQAISMLDRQGLFDRRMTVRLDR 292 (608)
T ss_pred EEEecchHHHHHHHHhhccCCCccccceeeccc
Confidence 999999999999999999988888888888754
No 44
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=2.9e-19 Score=148.89 Aligned_cols=171 Identities=25% Similarity=0.460 Sum_probs=145.3
Q ss_pred ceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccc
Q 015870 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281 (399)
Q Consensus 203 ~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~ 281 (399)
.++||+.+++.+.++.|+..|..||+|..|.+.-+ ..++.+|++||+|+-.+.|.-|++.++|..++|+.|.|......
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 56899999999999999999999999999998766 56788999999999999999999999999999999999854333
Q ss_pred hHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCC-CCcccEEEEEeCCHHHHH
Q 015870 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFSTPEEAS 360 (399)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~-~~~~g~afV~f~~~~~A~ 360 (399)
.........-.+.. -.-..|||.-+.++.+++||+.+|+.||.|.+|++-+.++ +.++||+||+|.+..+..
T Consensus 194 pQAQpiID~vqeeA-------k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEA-------KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred cccchHHHHHHHHH-------HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 22222221111111 1225799999999999999999999999999999988875 458999999999999999
Q ss_pred HHHHHhcCceecCeeEEEEE
Q 015870 361 RALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 361 ~A~~~l~~~~~~g~~l~v~~ 380 (399)
.|+..+|-+-++|..|+|--
T Consensus 267 eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 267 EAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhhcchhhcccceEeccc
Confidence 99999999999999999854
No 45
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.80 E-value=3.8e-18 Score=134.23 Aligned_cols=158 Identities=23% Similarity=0.474 Sum_probs=134.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHH----HHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 21 FGTTSLYVGDLEANVTDSQLYD----LFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~----~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
++..||||+||+..+..++|+. +|++||.|++|...+ +.+.+|.|||.|.+.+.|..|+..|+|.+|.|++++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3444999999999999999877 999999999998864 678899999999999999999999999999999999
Q ss_pred EeeccCCcccc------------------------------------------------cCCCceEEEcCCCcccCHHHH
Q 015870 97 VMYSHRDPSLR------------------------------------------------KSGAGNIFIKNLDKAIDHKAL 128 (399)
Q Consensus 97 v~~~~~~~~~~------------------------------------------------~~~~~~l~v~nlp~~~t~~~l 128 (399)
|.+++.+.... ......+++.|||..++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 99987542111 112346899999999999999
Q ss_pred HHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC-Cceeeee
Q 015870 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVG 185 (399)
Q Consensus 129 ~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~-~~~~~v~ 185 (399)
..+|..|.....+.++.. ..+.|||+|.+...+..|.+.+++..+. ...+.+.
T Consensus 164 ~~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred HHHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 999999999988888875 4678999999999999999999987775 4444443
No 46
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=3e-18 Score=129.33 Aligned_cols=149 Identities=19% Similarity=0.362 Sum_probs=126.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
.+.+++|||+|||.++.+.||.++|-+||.|.+|.+.... +. -.||||+|+++.||..|+.--++.-++|..|+|++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~-ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GP-PPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CC-CCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 4678999999999999999999999999999999986542 21 24999999999999999998899999999999999
Q ss_pred ccCCcc------------------------cccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEE
Q 015870 100 SHRDPS------------------------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYG 155 (399)
Q Consensus 100 ~~~~~~------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a 155 (399)
++.... ........+.|++||++-++++|++.+...|.|-...+.++ +++
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~G 153 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVG 153 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cce
Confidence 864311 11122346999999999999999999999999987777764 478
Q ss_pred EEEecCHHHHHHHHHHhcCCcc
Q 015870 156 FVQFDNEESAQKAIEKLNGMLL 177 (399)
Q Consensus 156 ~v~f~~~~~a~~a~~~l~~~~~ 177 (399)
.|+|...++..-|+.+|....+
T Consensus 154 vV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeeeehhhHHHHHHhhccccc
Confidence 9999999999999999876544
No 47
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.79 E-value=5.2e-17 Score=137.62 Aligned_cols=254 Identities=19% Similarity=0.259 Sum_probs=195.8
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC-C-c
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN-G-K 93 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~-g-~ 93 (399)
....+..--++.|.|+-..++-|-|.+.|++||.|..|--+.+.. +- .|+|+|.+.+.|+.|...|+|..|. | .
T Consensus 143 ~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn-~F---QALvQy~d~~sAq~AK~aLdGqnIyngcC 218 (492)
T KOG1190|consen 143 NEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN-GF---QALVQYTDAVSAQAAKLALDGQNIYNGCC 218 (492)
T ss_pred ccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc-ch---hhhhhccchhhHHHHHHhccCCcccCcee
Confidence 344455667888999999999999999999999998887775532 22 6999999999999999999987654 3 4
Q ss_pred ccEEeeccCC----------------c----c----------------------------------------cccC-CCc
Q 015870 94 PIRVMYSHRD----------------P----S----------------------------------------LRKS-GAG 112 (399)
Q Consensus 94 ~i~v~~~~~~----------------~----~----------------------------------------~~~~-~~~ 112 (399)
.++|.+++-. + . .... ...
T Consensus 219 tLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~ 298 (492)
T KOG1190|consen 219 TLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANV 298 (492)
T ss_pred EEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCce
Confidence 5666665310 0 0 0000 024
Q ss_pred eEEEcCCC-cccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeecccccc
Q 015870 113 NIFIKNLD-KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191 (399)
Q Consensus 113 ~l~v~nlp-~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~ 191 (399)
.|.|.||. ..+|.+.|..+|+.||.|..++++.++ +-.|+|++.+...|..|++.|+|..+.|+.|++.+.....
T Consensus 299 vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 299 VLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred EEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 56777775 458999999999999999999999873 2469999999999999999999999999999997765432
Q ss_pred cchhh-----------------------------cccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCe
Q 015870 192 ERDTE-----------------------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242 (399)
Q Consensus 192 ~~~~~-----------------------------~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~ 242 (399)
-.-+. .-.+++.++.+.|+|++++++++.+.|..-|.......... ..
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd 451 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KD 451 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CC
Confidence 11100 01245668999999999999999999999887655444433 23
Q ss_pred eeEEEEEeCCHHHHHHHHHHhCCCccCCc-eeEEecccc
Q 015870 243 KCFGFVNFENSDDAARAVEALNGKKFDDK-EWYVGKAQK 280 (399)
Q Consensus 243 ~g~~~v~f~~~~~a~~a~~~l~g~~~~~~-~l~v~~~~~ 280 (399)
+.++++.+.+.+.|..|+..++...+.+. .++|++++.
T Consensus 452 ~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 452 RKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 45799999999999999999988888765 889988753
No 48
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.79 E-value=3.9e-18 Score=143.07 Aligned_cols=290 Identities=16% Similarity=0.158 Sum_probs=204.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
.....+..|..|+|||..+..+|..+|.-..-......+.-...|+..|.|.|.|.+++.-..|+++ |.+.+.++.|.|
T Consensus 55 ~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryiev 133 (508)
T KOG1365|consen 55 HSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEV 133 (508)
T ss_pred cccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceee
Confidence 3455677899999999999999999997542111122222334577788999999999999999996 878889999999
Q ss_pred eeccCCccc--------------ccCCCceEEEcCCCcccCHHHHHHHhcc----cCCeEEEEEeeCCCCCceeEEEEEe
Q 015870 98 MYSHRDPSL--------------RKSGAGNIFIKNLDKAIDHKALHDTFSA----FGNILSCKVATDLNGQSKGYGFVQF 159 (399)
Q Consensus 98 ~~~~~~~~~--------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~----~g~v~~~~~~~~~~~~~~g~a~v~f 159 (399)
..+..+... .+.+.-.+.+++||.+.+..++.++|.. .+..+.+.++..++|+..|-|||.|
T Consensus 134 Yka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 134 YKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLF 213 (508)
T ss_pred eccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEe
Confidence 877654321 2233345778999999999999999963 2466778888889999999999999
Q ss_pred cCHHHHHHHHHHhcCCccCCceeeeecccccccchhhcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCC
Q 015870 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239 (399)
Q Consensus 160 ~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 239 (399)
..+++|..|+.+- ...++.+.|.+- ..|..++......+-.- -+...
T Consensus 214 a~ee~aq~aL~kh-rq~iGqRYIElF---------------------------RSTaaEvqqvlnr~~s~---pLi~~-- 260 (508)
T KOG1365|consen 214 ACEEDAQFALRKH-RQNIGQRYIELF---------------------------RSTAAEVQQVLNREVSE---PLIPG-- 260 (508)
T ss_pred cCHHHHHHHHHHH-HHHHhHHHHHHH---------------------------HHhHHHHHHHHHhhccc---cccCC--
Confidence 9999999999863 233333333331 12334444444432100 00000
Q ss_pred CCeeeEEEEEeCCHHHHHHHHHHhCCCc-cCCceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCC
Q 015870 240 GKSKCFGFVNFENSDDAARAVEALNGKK-FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318 (399)
Q Consensus 240 ~~~~g~~~v~f~~~~~a~~a~~~l~g~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 318 (399)
.+.. +.+-. . .......+..+|.+++||+.++
T Consensus 261 ------------------------~~sp~~p~~p--~---------------------~~~p~~~~kdcvRLRGLPy~At 293 (508)
T KOG1365|consen 261 ------------------------LTSPLLPGGP--A---------------------RLVPPTRSKDCVRLRGLPYEAT 293 (508)
T ss_pred ------------------------CCCCCCCCCc--c---------------------ccCCCCCCCCeeEecCCChhhh
Confidence 0000 00000 0 0000112356899999999999
Q ss_pred HHHHHHhhcCcC-CceE--EEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecHHHH
Q 015870 319 DEKLKQLFSPFG-SITS--CKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388 (399)
Q Consensus 319 ~~dl~~~f~~~G-~v~~--v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 388 (399)
.+||.++|..|. .|.. |++..+..|++.|.|||+|.+.|+|.+|...-++..+++|.|.|--..-.+..+
T Consensus 294 vEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~ 366 (508)
T KOG1365|consen 294 VEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNE 366 (508)
T ss_pred HHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHH
Confidence 999999998886 3444 888888899999999999999999999999999998899999997766544443
No 49
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=3.8e-18 Score=136.34 Aligned_cols=169 Identities=31% Similarity=0.464 Sum_probs=145.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC-CC--CcccEEe
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP-LN--GKPIRVM 98 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~-~~--g~~i~v~ 98 (399)
..+.|||+.|...-.|+|++.+|..||.+.++.+.+.. .|.++|||||.|.+..+|+.|+..||+.. .- ..-+.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 57899999999999999999999999999999999884 69999999999999999999999999764 22 3556676
Q ss_pred eccCCc--------------------------------------------------------------------------
Q 015870 99 YSHRDP-------------------------------------------------------------------------- 104 (399)
Q Consensus 99 ~~~~~~-------------------------------------------------------------------------- 104 (399)
+++.+.
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 653110
Q ss_pred --------------------------------------------------------------------------------
Q 015870 105 -------------------------------------------------------------------------------- 104 (399)
Q Consensus 105 -------------------------------------------------------------------------------- 104 (399)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred ----------------------ccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecC
Q 015870 105 ----------------------SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161 (399)
Q Consensus 105 ----------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~ 161 (399)
.....+.+.|||..||.+..+.||.++|-.||.|.+.+++-+ .++.++.++||.|.+
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 001123457999999999999999999999999999999988 678889999999999
Q ss_pred HHHHHHHHHHhcCCccCCceeeeecccccc
Q 015870 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191 (399)
Q Consensus 162 ~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~ 191 (399)
+.++..|+..|||+.|+-++++|....++.
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 999999999999999999999998765543
No 50
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.77 E-value=5.7e-19 Score=155.44 Aligned_cols=178 Identities=24% Similarity=0.433 Sum_probs=147.8
Q ss_pred cceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEecccc
Q 015870 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (399)
Q Consensus 202 ~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~ 280 (399)
..++++.-++-..++-+|.++|+..|.|..+.++.+ ..+.++|.+||+|.+.+....|+ .|.|..+-|.+|.|.....
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHH
Confidence 456777778888899999999999999999999988 56789999999999988888888 5999999999999977654
Q ss_pred chHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHH
Q 015870 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEA 359 (399)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A 359 (399)
.....+. ............+...|+|+||..++++++|+.+|++||.|..|.+..+. +|+++||+||+|.+.++|
T Consensus 258 eknr~a~----~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 258 EKNRAAN----ASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred HHHHHHh----ccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 3333111 11111111123344559999999999999999999999999999998886 999999999999999999
Q ss_pred HHHHHHhcCceecCeeEEEEEeeec
Q 015870 360 SRALLEMNGKMVVSKPLYVALAQRK 384 (399)
Q Consensus 360 ~~A~~~l~~~~~~g~~l~v~~a~~~ 384 (399)
.+|+..|||..+.|+.|+|..--.+
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeee
Confidence 9999999999999999999875544
No 51
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.77 E-value=1.7e-18 Score=147.35 Aligned_cols=170 Identities=28% Similarity=0.466 Sum_probs=149.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeecc
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (399)
..++|+|++|+|+++++.|+++|.+||.|.++.++++..+++++|+.||+|.+++...+++.. ..+.|.|+.|.+..+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 789999999999999999999999999999999999999999999999999999999999985 6678999999998876
Q ss_pred CCcccccCC----CceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhcCCc
Q 015870 102 RDPSLRKSG----AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (399)
Q Consensus 102 ~~~~~~~~~----~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 176 (399)
+........ ...++|++||.+++++++++.|..||.|..+.++.+ .....++++||.|.+++.+..++. ..-..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 654333332 458999999999999999999999999988888888 668899999999999999999886 56678
Q ss_pred cCCceeeeecccccccc
Q 015870 177 LNDKQVYVGHFLRKQER 193 (399)
Q Consensus 177 ~~~~~~~v~~~~~~~~~ 193 (399)
+.++.+.+....++...
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 88999988777665443
No 52
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.6e-17 Score=148.49 Aligned_cols=257 Identities=22% Similarity=0.404 Sum_probs=197.7
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhcc-----------C-CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQM-----------G-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~-----------g-~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~ 84 (399)
+......+.++|+++|..++++....+|..- | .+..+.+-..+ ++||++|.+.++|..|+.
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~- 241 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMA- 241 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhc-
Confidence 3347788999999999999999999998653 3 36666665554 399999999999999998
Q ss_pred hCCCCCCCcccEEeeccCCcc---------------------cccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEE
Q 015870 85 LNFTPLNGKPIRVMYSHRDPS---------------------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143 (399)
Q Consensus 85 l~~~~~~g~~i~v~~~~~~~~---------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~ 143 (399)
+++..+.|..+++........ ........++|++||..+++.++.+++..||.+....+
T Consensus 242 ~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~l 321 (500)
T KOG0120|consen 242 LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRL 321 (500)
T ss_pred ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhhee
Confidence 688889999888765432210 00112356999999999999999999999999999999
Q ss_pred eeC-CCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeecccccccchhhcc------------------cCCcce
Q 015870 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN------------------KSKFTN 204 (399)
Q Consensus 144 ~~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~ 204 (399)
+.+ ..+.++||||.+|.++.....|+..|+|..+.+..+.+.............. ..+...
T Consensus 322 v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~V 401 (500)
T KOG0120|consen 322 VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEV 401 (500)
T ss_pred ecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchh
Confidence 998 4488999999999999999999999999999999888865543322111111 112222
Q ss_pred EEeecCCcC--c--------cHHHHHHHhcccCCeeEEEEEEC-CC---CCeeeEEEEEeCCHHHHHHHHHHhCCCccCC
Q 015870 205 VYVKNLSES--T--------TEEDLQKSFGEYGTITSAVVMRD-GD---GKSKCFGFVNFENSDDAARAVEALNGKKFDD 270 (399)
Q Consensus 205 l~i~~l~~~--~--------~~~~l~~~f~~~g~v~~~~~~~~-~~---~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~ 270 (399)
+++.|+-.. . -.++++..+++||.|..|.++++ .. ..+.|..||+|.+.+++++|.+.|.|+.|.+
T Consensus 402 l~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n 481 (500)
T KOG0120|consen 402 LCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN 481 (500)
T ss_pred hhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCC
Confidence 333332111 1 12667777899999999999887 32 3557789999999999999999999999999
Q ss_pred ceeEEecccc
Q 015870 271 KEWYVGKAQK 280 (399)
Q Consensus 271 ~~l~v~~~~~ 280 (399)
+.+...+..+
T Consensus 482 RtVvtsYyde 491 (500)
T KOG0120|consen 482 RTVVASYYDE 491 (500)
T ss_pred cEEEEEecCH
Confidence 9999988764
No 53
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=4.3e-18 Score=130.86 Aligned_cols=84 Identities=33% Similarity=0.553 Sum_probs=78.3
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+++|||+|||+.++++||+++|++||.|.+++++.+. +++++|||||+|.+.++|.+|++.||+..|+|++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 356789999999999999999999999999999998875 7889999999999999999999999999999999999999
Q ss_pred eecHH
Q 015870 382 QRKED 386 (399)
Q Consensus 382 ~~~~~ 386 (399)
+++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 87654
No 54
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=6.2e-18 Score=151.04 Aligned_cols=269 Identities=19% Similarity=0.338 Sum_probs=200.4
Q ss_pred CceEEEcCCCcccCHHHHHHHhccc------------CCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC
Q 015870 111 AGNIFIKNLDKAIDHKALHDTFSAF------------GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178 (399)
Q Consensus 111 ~~~l~v~nlp~~~t~~~l~~~f~~~------------g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 178 (399)
...++|+++|+..+++....+|..- ..+..+.+.. .+++++++|.+.++|..++. +.+..+.
T Consensus 175 ~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 175 ARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----EKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----cccceeEEecCCCchhhhhc-ccchhhC
Confidence 4579999999999999999888764 1244444443 47789999999999999996 6777778
Q ss_pred Cceeeeecccccccchh-----------------hcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCC
Q 015870 179 DKQVYVGHFLRKQERDT-----------------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDG 240 (399)
Q Consensus 179 ~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~ 240 (399)
|..+.+........... .........+++++||...+++.+.++...||.+....++.+ ..|
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 87776643332221111 011223356899999999999999999999999998888777 447
Q ss_pred CeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHHHH------HHHHhhHHhhhccCCceEEEecCC
Q 015870 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH------QFEQNMKEAADKFQGANLYIKNLD 314 (399)
Q Consensus 241 ~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~v~nl~ 314 (399)
-++|++|.+|.+......|+..++|..+.++.+.+..+-.-......... ..-.....+..+.++..|.+.|+-
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~V 408 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVV 408 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcC
Confidence 89999999999999999999999999999999999887554433222211 001111112344566667776663
Q ss_pred C--cC-CH-------HHHHHhhcCcCCceEEEEeeC-CC---CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 315 D--SI-DD-------EKLKQLFSPFGSITSCKVMRD-PS---GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 315 ~--~~-~~-------~dl~~~f~~~G~v~~v~~~~~-~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
. .. .+ +|++.-+.+||.|.+|.+++. .+ ....|..||+|.+.+++++|+++|+|+.|.||.+..+|
T Consensus 409 t~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 409 TPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred CHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 2 11 11 466777889999999999888 33 33578899999999999999999999999999999999
Q ss_pred eeecH
Q 015870 381 AQRKE 385 (399)
Q Consensus 381 a~~~~ 385 (399)
..+.+
T Consensus 489 ydeDk 493 (500)
T KOG0120|consen 489 YDEDK 493 (500)
T ss_pred cCHHH
Confidence 87554
No 55
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=3.9e-17 Score=125.54 Aligned_cols=87 Identities=34% Similarity=0.564 Sum_probs=80.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
.....+++|||+|||+++++++|+++|++||.|.++.++.+..++.++|||||+|.+.++|+.|+..|++..|.|+.|+|
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCc
Q 015870 98 MYSHRDP 104 (399)
Q Consensus 98 ~~~~~~~ 104 (399)
.++...+
T Consensus 109 ~~a~~~~ 115 (144)
T PLN03134 109 NPANDRP 115 (144)
T ss_pred EeCCcCC
Confidence 9986543
No 56
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.74 E-value=5e-17 Score=128.00 Aligned_cols=175 Identities=23% Similarity=0.366 Sum_probs=144.6
Q ss_pred cceEEeecCCcCccHHHHHH----HhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEec
Q 015870 202 FTNVYVKNLSESTTEEDLQK----SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277 (399)
Q Consensus 202 ~~~l~i~~l~~~~~~~~l~~----~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~ 277 (399)
..+|||.||...+..++++. +|++||.|..|.... ....+|-|||.|.+.+.|..|+..|+|..+-|+.+++.+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 34899999999999999988 999999999988764 346788999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHH---------------Hh---h----------H----HhhhccCCceEEEecCCCcCCHHHHHHh
Q 015870 278 AQKKSERELELKHQFE---------------QN---M----------K----EAADKFQGANLYIKNLDDSIDDEKLKQL 325 (399)
Q Consensus 278 ~~~~~~~~~~~~~~~~---------------~~---~----------~----~~~~~~~~~~l~v~nl~~~~~~~dl~~~ 325 (399)
+............... +. . . .....++...+++.|||..++.+-+..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 9766554333110000 00 0 0 0122567888999999999999999999
Q ss_pred hcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec-CeeEEEEEee
Q 015870 326 FSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQ 382 (399)
Q Consensus 326 f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~ 382 (399)
|++|.....++++... .+.|||+|.+...|..|...+.+..+- ...|+|.+|+
T Consensus 167 f~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999988863 468999999999999999999999985 8899998875
No 57
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.72 E-value=1.2e-17 Score=142.26 Aligned_cols=175 Identities=26% Similarity=0.448 Sum_probs=148.0
Q ss_pred CcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccc
Q 015870 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (399)
Q Consensus 201 ~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~ 279 (399)
...+++|++|++.++++.|++.|.+||.|.++.+..+ ..+++++++||.|++.+....++. .....++|+.|....+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 4577999999999999999999999999999999987 568999999999998888887765 45566888888887776
Q ss_pred cchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHH
Q 015870 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358 (399)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~ 358 (399)
+.......... ....+++|++||..++++++++.|.+||.|..+.++.+. ..+++||+||+|.+.++
T Consensus 84 ~r~~~~~~~~~------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~s 151 (311)
T KOG4205|consen 84 SREDQTKVGRH------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDS 151 (311)
T ss_pred Ccccccccccc------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccc
Confidence 55443222111 146689999999999999999999999999888877775 78899999999999999
Q ss_pred HHHHHHHhcCceecCeeEEEEEeeecHHHHH
Q 015870 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389 (399)
Q Consensus 359 A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~ 389 (399)
+.+++ ...-..|+|+.+.|..|-||+....
T Consensus 152 Vdkv~-~~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 152 VDKVT-LQKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred cceec-ccceeeecCceeeEeeccchhhccc
Confidence 99888 5688899999999999999987653
No 58
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.71 E-value=9.2e-17 Score=144.73 Aligned_cols=174 Identities=11% Similarity=0.055 Sum_probs=131.9
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 13 ~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
++..+.-....+.+-+.+.+.++.+.|+++||... .|-...+..+.-.+...|.++|.|....++++|+.. +.+.+-+
T Consensus 301 ggstpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~ 378 (944)
T KOG4307|consen 301 GGSTPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVN 378 (944)
T ss_pred CCCCCcccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhhhh
Confidence 33345556778889999999999999999999744 244444544544455588999999999999999986 7777778
Q ss_pred cccEEeeccCCc-------------------------------------ccccCCCceEEEcCCCcccCHHHHHHHhccc
Q 015870 93 KPIRVMYSHRDP-------------------------------------SLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135 (399)
Q Consensus 93 ~~i~v~~~~~~~-------------------------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~ 135 (399)
+.+.+....... .........|||..||..++...+.++|...
T Consensus 379 R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~ 458 (944)
T KOG4307|consen 379 RPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGA 458 (944)
T ss_pred cceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhh
Confidence 888886643211 0111234579999999999999999999988
Q ss_pred CCeEE-EEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeeccc
Q 015870 136 GNILS-CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188 (399)
Q Consensus 136 g~v~~-~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~ 188 (399)
-.|++ |.+...+++...+.|||.|..++.+..|...-+.+.++.+.|+|....
T Consensus 459 ~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 459 AAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred hhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 88888 555555888889999999999988888887666667777777775433
No 59
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.69 E-value=6.2e-16 Score=120.56 Aligned_cols=154 Identities=20% Similarity=0.332 Sum_probs=119.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCC-CcccEEEEEeCCHHHHHHHHHHhCCCCCC---CcccE
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR-RSLGYGYVNFSNAQEAARALEMLNFTPLN---GKPIR 96 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~-~~~g~a~V~f~~~~~A~~a~~~l~~~~~~---g~~i~ 96 (399)
..-+||||+|||.++...||+.+|+.|--+....+......+ ..+-+|||.|.+..+|..|++.|||..|+ +.+++
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 347899999999999999999999998545555554332222 23469999999999999999999999886 78899
Q ss_pred EeeccCCccccc--------------------------------------------------------------------
Q 015870 97 VMYSHRDPSLRK-------------------------------------------------------------------- 108 (399)
Q Consensus 97 v~~~~~~~~~~~-------------------------------------------------------------------- 108 (399)
|++++.+...++
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 988754311000
Q ss_pred ----------------CCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh
Q 015870 109 ----------------SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172 (399)
Q Consensus 109 ----------------~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l 172 (399)
....+|||.||.+++++++|+++|+.|......++.. ..|. ..||++|.+.+.|..|+..|
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g~--~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGGM--PVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCCc--ceEeecHHHHHHHHHHHHHh
Confidence 0113699999999999999999999998776555443 2333 36999999999999999999
Q ss_pred cCCcc
Q 015870 173 NGMLL 177 (399)
Q Consensus 173 ~~~~~ 177 (399)
+|..+
T Consensus 269 qg~~~ 273 (284)
T KOG1457|consen 269 QGNLL 273 (284)
T ss_pred hccee
Confidence 88654
No 60
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.67 E-value=3.5e-16 Score=106.13 Aligned_cols=70 Identities=44% Similarity=0.764 Sum_probs=67.4
Q ss_pred EEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 015870 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (399)
Q Consensus 308 l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 377 (399)
|+|+|||..+++++|+++|++||.|..+.+..+..+..+++|||+|.+.++|.+|+..++|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999998888888999999999999999999999999999999986
No 61
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.4e-15 Score=113.78 Aligned_cols=162 Identities=20% Similarity=0.296 Sum_probs=127.8
Q ss_pred cceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccc
Q 015870 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281 (399)
Q Consensus 202 ~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~ 281 (399)
+..|+++|||.++.+.+|.++|.+||.|..|.+..... ...+|||+|++.-+|..|+..-+|..++|..|.|.++..-
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 46799999999999999999999999999998875532 3458999999999999999999999999999999987543
Q ss_pred hHHHHHHHHHHHHhh---------HHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEE
Q 015870 282 SERELELKHQFEQNM---------KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352 (399)
Q Consensus 282 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~ 352 (399)
....... ....... .-....-+...|.|++||++.++.||++++..-|.|....+.++ |++.|+
T Consensus 84 r~s~~~~-G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~ 156 (241)
T KOG0105|consen 84 RSSSDRR-GSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVE 156 (241)
T ss_pred Ccccccc-cccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeee
Confidence 2110000 0000000 00001112346999999999999999999999999999988776 589999
Q ss_pred eCCHHHHHHHHHHhcCceec
Q 015870 353 FSTPEEASRALLEMNGKMVV 372 (399)
Q Consensus 353 f~~~~~A~~A~~~l~~~~~~ 372 (399)
|...|+.+.|+..|....+.
T Consensus 157 ~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeehhhHHHHHHhhcccccc
Confidence 99999999999999987774
No 62
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.9e-16 Score=123.02 Aligned_cols=81 Identities=32% Similarity=0.597 Sum_probs=77.9
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
+..+|.|.||+.+++++||+++|.+||.|..+.+.++. +|.++|||||+|.++++|.+|++.|||+-+..=.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999998886 89999999999999999999999999999999999999999
Q ss_pred ec
Q 015870 383 RK 384 (399)
Q Consensus 383 ~~ 384 (399)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 63
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.64 E-value=1.9e-14 Score=120.84 Aligned_cols=260 Identities=17% Similarity=0.243 Sum_probs=194.8
Q ss_pred CCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh--cCCccCCceeeeecc
Q 015870 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL--NGMLLNDKQVYVGHF 187 (399)
Q Consensus 110 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l--~~~~~~~~~~~v~~~ 187 (399)
.+--+.|++|-..+++.+|.+.++.||.|..+..+.. +..+.|+|.+.+.|..+.... +...+.|+...+.+.
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~-----~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH-----KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEeccc-----cceeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 3445889999999999999999999999988877754 567999999999999998744 334567777766666
Q ss_pred cccccchhhcccCCcce---EEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 015870 188 LRKQERDTEINKSKFTN---VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264 (399)
Q Consensus 188 ~~~~~~~~~~~~~~~~~---l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~ 264 (399)
.+..-..+.......+. +.|-|--..++.+-|..++...|.|..|.+...+. . -|.|+|++.+.|++|...|+
T Consensus 105 tsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkng-V---QAmVEFdsv~~AqrAk~alN 180 (494)
T KOG1456|consen 105 TSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNG-V---QAMVEFDSVEVAQRAKAALN 180 (494)
T ss_pred hhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccc-e---eeEEeechhHHHHHHHhhcc
Confidence 44433332222222222 34667777899999999999999999999987632 2 48999999999999999999
Q ss_pred CCccCC--ceeEEeccccchHHHHH--------------------------------HHHHHHHhh--------------
Q 015870 265 GKKFDD--KEWYVGKAQKKSERELE--------------------------------LKHQFEQNM-------------- 296 (399)
Q Consensus 265 g~~~~~--~~l~v~~~~~~~~~~~~--------------------------------~~~~~~~~~-------------- 296 (399)
|..+-. ..|++.+++|....-.. .....+...
T Consensus 181 GADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p 260 (494)
T KOG1456|consen 181 GADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGP 260 (494)
T ss_pred cccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCC
Confidence 977532 56666666543210000 000000000
Q ss_pred ------------------HHhhhccCCceEEEecCCC-cCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHH
Q 015870 297 ------------------KEAADKFQGANLYIKNLDD-SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPE 357 (399)
Q Consensus 297 ------------------~~~~~~~~~~~l~v~nl~~-~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~ 357 (399)
.+.....+++.+.|.+|.- .++.+-|..+|..||.|..|++++.. .|.|.|++.+..
T Consensus 261 ~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~ 336 (494)
T KOG1456|consen 261 PHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAY 336 (494)
T ss_pred CCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHH
Confidence 0002234567899999985 68999999999999999999999875 468999999999
Q ss_pred HHHHHHHHhcCceecCeeEEEEEee
Q 015870 358 EASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 358 ~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
+.++|+.-||+..+-|.+|.|.+++
T Consensus 337 aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 337 AVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred HHHHHHHHhccCccccceEEEeecc
Confidence 9999999999999999999999887
No 64
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=1.1e-15 Score=103.76 Aligned_cols=70 Identities=44% Similarity=0.808 Sum_probs=66.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 26 l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
|||+|||+++|+++|+++|++||.|..+.+..+ .++..+|+|||+|.+.++|++|+..+++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6788999999999999999999999999999998875
No 65
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.64 E-value=2.1e-15 Score=102.03 Aligned_cols=70 Identities=40% Similarity=0.692 Sum_probs=65.1
Q ss_pred EEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 015870 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (399)
Q Consensus 308 l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 377 (399)
|+|+|||+.++++||+++|+.||.|..+++....++..+++|||+|.+.++|.+|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7899999999999999999999999999999987788999999999999999999999999999999985
No 66
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=4e-15 Score=117.94 Aligned_cols=84 Identities=27% Similarity=0.432 Sum_probs=80.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
-..+++|.|+|||.+++|++|+++|.+||+|..+.+.+++.||.++|||||.|.+-++|.+|+..|+|.-+++-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 015870 100 SHRD 103 (399)
Q Consensus 100 ~~~~ 103 (399)
+++.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9764
No 67
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.60 E-value=8e-14 Score=116.17 Aligned_cols=170 Identities=21% Similarity=0.333 Sum_probs=139.0
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeE--------EEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV--------SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT 88 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~--------~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~ 88 (399)
.+.+.-++.|||+|||.++|.+++.++|++||-|. .|+++++. .|..+|-|++.|...++...|+..|++.
T Consensus 128 ~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 128 NPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred CcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcc
Confidence 33456677899999999999999999999998663 47888886 4999999999999999999999999999
Q ss_pred CCCCcccEEeeccCC------------------------------------cccccCCCceEEEcCCCcc----c-----
Q 015870 89 PLNGKPIRVMYSHRD------------------------------------PSLRKSGAGNIFIKNLDKA----I----- 123 (399)
Q Consensus 89 ~~~g~~i~v~~~~~~------------------------------------~~~~~~~~~~l~v~nlp~~----~----- 123 (399)
.+.|..++|+.+.-. ...+....++|.+.|+=.. .
T Consensus 207 ~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~ 286 (382)
T KOG1548|consen 207 ELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLL 286 (382)
T ss_pred cccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHH
Confidence 999999999886411 1122234567888887321 1
Q ss_pred --CHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeeccccc
Q 015870 124 --DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190 (399)
Q Consensus 124 --t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~ 190 (399)
-+++|.+-.+.||.|..+.+... .+.|.+.|.|.+.++|..|++.|+|..+.|+.|....+...
T Consensus 287 ~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 287 NDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 24677788899999999988865 35677899999999999999999999999999998776543
No 68
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=5.8e-15 Score=99.84 Aligned_cols=70 Identities=33% Similarity=0.683 Sum_probs=63.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 26 l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
|+|+|||+++++++|+++|+.+|+|..+.+..++. +..+|+|||+|.+.++|++|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999866 89999999999999999999999888899998774
No 69
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.58 E-value=1.8e-13 Score=114.16 Aligned_cols=178 Identities=20% Similarity=0.301 Sum_probs=136.3
Q ss_pred cceEEeecCCcCccHHHHHHHhcccCCee--------EEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCcee
Q 015870 202 FTNVYVKNLSESTTEEDLQKSFGEYGTIT--------SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW 273 (399)
Q Consensus 202 ~~~l~i~~l~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l 273 (399)
...+||+|||..+|.+++.++|+++|.|. .|.+-++..|..+|-+.+.|...+++.-|+..|++..+.|+.+
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 35699999999999999999999999664 5677788889999999999999999999999999999999999
Q ss_pred EEeccccchHH----------------HHH-HHHHHHHhh---HHhhhccCCceEEEecCCC----cCC-------HHHH
Q 015870 274 YVGKAQKKSER----------------ELE-LKHQFEQNM---KEAADKFQGANLYIKNLDD----SID-------DEKL 322 (399)
Q Consensus 274 ~v~~~~~~~~~----------------~~~-~~~~~~~~~---~~~~~~~~~~~l~v~nl~~----~~~-------~~dl 322 (399)
+|..+.-.... ... ..+...... ......-..++|++.|+=. ..+ .+||
T Consensus 214 rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl 293 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDL 293 (382)
T ss_pred EEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHH
Confidence 99877321110 000 000000000 0112233567899999942 233 2566
Q ss_pred HHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 323 ~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
..-+++||.|.+|.+.... +.|.+.|.|.+.++|...|..|+|++|+||.|..++..
T Consensus 294 ~eec~K~G~v~~vvv~d~h---PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 294 TEECEKFGQVRKVVVYDRH---PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHhCCcceEEEeccC---CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 7778999999999876442 36799999999999999999999999999999988754
No 70
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=119.43 Aligned_cols=76 Identities=20% Similarity=0.343 Sum_probs=70.6
Q ss_pred CceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeee
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 383 (399)
.++|||+|||+.++++||+++|+.||.|.+|+|+.+. .++|||||+|++.++|..|+ .|+|..|.|+.|+|.++.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999998874 35789999999999999999 5999999999999999873
No 71
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=5.2e-15 Score=122.18 Aligned_cols=80 Identities=28% Similarity=0.516 Sum_probs=74.8
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 383 (399)
..+.|+|+|||+...+-||+.+|.+||.|.+|.|+-++.| ++||+||+|++.+||.+|..+|||..+.||+|.|.-|-.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4568999999999999999999999999999999998766 599999999999999999999999999999999998865
Q ss_pred c
Q 015870 384 K 384 (399)
Q Consensus 384 ~ 384 (399)
+
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 4
No 72
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=6.2e-15 Score=116.46 Aligned_cols=80 Identities=30% Similarity=0.458 Sum_probs=73.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
-.-++|||+||||.++.++|+++|++||+|++..|+.|+.+|+++||+||+|.+.++|.+|+... +-.|+||+..+..+
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 34578999999999999999999999999999999999999999999999999999999999853 45689999888776
Q ss_pred c
Q 015870 101 H 101 (399)
Q Consensus 101 ~ 101 (399)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 4
No 73
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=3.2e-15 Score=115.20 Aligned_cols=80 Identities=28% Similarity=0.447 Sum_probs=76.1
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
...+|.|.||.+.++.+||+.+|++||.|-+|.|+.+. ++.++|||||.|....||+.|+++|+|.+++|+.|+|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 46789999999999999999999999999999999987 78899999999999999999999999999999999999987
Q ss_pred e
Q 015870 383 R 383 (399)
Q Consensus 383 ~ 383 (399)
=
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
No 74
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=7.2e-15 Score=113.29 Aligned_cols=89 Identities=29% Similarity=0.461 Sum_probs=85.2
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
.|++.....+|.|-||-+-++.++|+..|++||.|-+|.|..|..|+.++|||||-|....+|++|+++|+|..++|+.|
T Consensus 6 ~PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 6 PPPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred CCCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCc
Q 015870 96 RVMYSHRDP 104 (399)
Q Consensus 96 ~v~~~~~~~ 104 (399)
.|+++....
T Consensus 86 rVq~arygr 94 (256)
T KOG4207|consen 86 RVQMARYGR 94 (256)
T ss_pred eehhhhcCC
Confidence 999986543
No 75
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=6.3e-15 Score=117.66 Aligned_cols=147 Identities=24% Similarity=0.479 Sum_probs=126.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccCC
Q 015870 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (399)
..++|++||+.+.+.+|..+|..||.+.++.+.. ||+||+|.+..+|..|+..+++..+.|..+.++++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5799999999999999999999999999887765 38999999999999999999999999988888887631
Q ss_pred ------ccc------------ccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHH
Q 015870 104 ------PSL------------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESA 165 (399)
Q Consensus 104 ------~~~------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a 165 (399)
+.. .....+.+.+.+++..+.+.+|...|..+|.+..... ..++++|+|++.+++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDA 146 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhh
Confidence 110 0123456889999999999999999999998854444 366899999999999
Q ss_pred HHHHHHhcCCccCCceeeee
Q 015870 166 QKAIEKLNGMLLNDKQVYVG 185 (399)
Q Consensus 166 ~~a~~~l~~~~~~~~~~~v~ 185 (399)
..|+..|++..+.++.+.+.
T Consensus 147 ~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred hhcchhccchhhcCceeeec
Confidence 99999999999999999883
No 76
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=3e-14 Score=97.08 Aligned_cols=84 Identities=26% Similarity=0.372 Sum_probs=75.6
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
..++.|||.|||+++|.++..++|-+||.|..|++-.. ...+|.|||.|++..+|.+||.-|+|..+.++.|.|-|..
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~--k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT--KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc--cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 35678999999999999999999999999999998554 4458999999999999999999999999999999999988
Q ss_pred ecHHHH
Q 015870 383 RKEDRR 388 (399)
Q Consensus 383 ~~~~~~ 388 (399)
+-+..+
T Consensus 94 ~~~~~~ 99 (124)
T KOG0114|consen 94 PEDAFK 99 (124)
T ss_pred HHHHHH
Confidence 766554
No 77
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.8e-14 Score=108.28 Aligned_cols=78 Identities=27% Similarity=0.494 Sum_probs=71.6
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
...++|||+||+..+++.||...|..||.+.+|.+-.. +.|||||+|+++.||..|+..|+|..|+|..|+|++..
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 34689999999999999999999999999999988765 46899999999999999999999999999999999987
Q ss_pred ec
Q 015870 383 RK 384 (399)
Q Consensus 383 ~~ 384 (399)
-+
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 43
No 78
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.54 E-value=9.7e-14 Score=108.44 Aligned_cols=170 Identities=21% Similarity=0.342 Sum_probs=123.0
Q ss_pred cCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC--CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccC---Ccee
Q 015870 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD--GDGKSKCFGFVNFENSDDAARAVEALNGKKFD---DKEW 273 (399)
Q Consensus 199 ~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~--~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~---~~~l 273 (399)
...-++|||.+||.++...+|..+|..|-..+.+.+... .....+.++|+.|.+...|..|++.|+|..|+ +..+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 344689999999999999999999999987777766554 22344578999999999999999999999886 4566
Q ss_pred EEeccccchHHHHHHH-------------------------HHHHHhh-------------------------------H
Q 015870 274 YVGKAQKKSERELELK-------------------------HQFEQNM-------------------------------K 297 (399)
Q Consensus 274 ~v~~~~~~~~~~~~~~-------------------------~~~~~~~-------------------------------~ 297 (399)
++.+++.-+....... ++..... .
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 6666532211100000 0000000 0
Q ss_pred H------------hhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 015870 298 E------------AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365 (399)
Q Consensus 298 ~------------~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 365 (399)
+ -.....+.+|||-||.+++++++|+.+|+.|-....++|... +| -..||++|++.+.|..|+.-
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g--~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GG--MPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CC--cceEeecHHHHHHHHHHHHH
Confidence 0 001123457999999999999999999999987777766443 22 45799999999999999999
Q ss_pred hcCcee
Q 015870 366 MNGKMV 371 (399)
Q Consensus 366 l~~~~~ 371 (399)
|.|..+
T Consensus 268 lqg~~~ 273 (284)
T KOG1457|consen 268 LQGNLL 273 (284)
T ss_pred hhccee
Confidence 999877
No 79
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.6e-14 Score=106.69 Aligned_cols=78 Identities=32% Similarity=0.538 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
.-.+.|||+||+.++++.||+..|..||++.+|+|-.... |||||+|.++-||..|+..|++..|.|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-----GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-----GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-----CceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 3478999999999999999999999999999999987433 69999999999999999999999999999999998
Q ss_pred cCC
Q 015870 101 HRD 103 (399)
Q Consensus 101 ~~~ 103 (399)
.-.
T Consensus 83 ~G~ 85 (195)
T KOG0107|consen 83 TGR 85 (195)
T ss_pred cCC
Confidence 754
No 80
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=9.2e-14 Score=94.71 Aligned_cols=84 Identities=20% Similarity=0.414 Sum_probs=75.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
-+++-++.|||+|||.++|.++.+++|.+||+|..|.|=.. ...+|.|||.|++..+|++|+..|++..+.++.+.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 44677899999999999999999999999999999988554 456689999999999999999999999999999999
Q ss_pred eeccCCc
Q 015870 98 MYSHRDP 104 (399)
Q Consensus 98 ~~~~~~~ 104 (399)
.+.....
T Consensus 90 lyyq~~~ 96 (124)
T KOG0114|consen 90 LYYQPED 96 (124)
T ss_pred EecCHHH
Confidence 8876543
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=9.3e-14 Score=114.12 Aligned_cols=76 Identities=17% Similarity=0.288 Sum_probs=70.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccC
Q 015870 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (399)
Q Consensus 23 ~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (399)
.++|||+|||+.+++++|+++|+.||.|.+|.++.+.. .+|+|||+|.++++|..|+. |++..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 68999999999999999999999999999999988753 45799999999999999996 899999999999998764
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.2e-14 Score=116.14 Aligned_cols=166 Identities=30% Similarity=0.435 Sum_probs=131.3
Q ss_pred eEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccchH
Q 015870 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283 (399)
Q Consensus 204 ~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~ 283 (399)
.++|+++|+...+.++..+|..||.+..+.+.. +++||.|++..+|..|+..+++..+.+-.+.+.++.....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 578999999999999999999999999987763 3679999999999999999999999998888887764322
Q ss_pred HHHHHH-HHHH-HhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHH
Q 015870 284 RELELK-HQFE-QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361 (399)
Q Consensus 284 ~~~~~~-~~~~-~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~ 361 (399)
...... ..-. .......+.-..+.+.|.+++..+.+.||.++|+++|.+....+ +++++||.|++.++|..
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhh
Confidence 220000 0000 01111122345577999999999999999999999999865554 25689999999999999
Q ss_pred HHHHhcCceecCeeEEEEEeee
Q 015870 362 ALLEMNGKMVVSKPLYVALAQR 383 (399)
Q Consensus 362 A~~~l~~~~~~g~~l~v~~a~~ 383 (399)
|+..|++..+.++.|++.++-.
T Consensus 149 a~~~l~~~~~~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 149 ALEKLDGKKLNGRRISVEKNSR 170 (216)
T ss_pred cchhccchhhcCceeeecccCc
Confidence 9999999999999999965443
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=2.3e-13 Score=92.68 Aligned_cols=72 Identities=40% Similarity=0.715 Sum_probs=67.5
Q ss_pred eEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 307 ~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
+|+|+|||..++.++|+++|.+||.|..+.+.... +.++|+|||+|.+.++|..|+..+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999988776 7788999999999999999999999999999999874
No 84
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.1e-13 Score=98.35 Aligned_cols=84 Identities=25% Similarity=0.491 Sum_probs=78.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
.-+.++||||+||...++|+.|.++|+++|+|..|-+=.++.+..+-|+|||+|.+.++|..|+..++++.++.++|.+.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 35789999999999999999999999999999999988888888899999999999999999999999999999999998
Q ss_pred eccC
Q 015870 99 YSHR 102 (399)
Q Consensus 99 ~~~~ 102 (399)
+...
T Consensus 112 ~D~G 115 (153)
T KOG0121|consen 112 WDAG 115 (153)
T ss_pred cccc
Confidence 7653
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=2.1e-13 Score=118.84 Aligned_cols=84 Identities=21% Similarity=0.381 Sum_probs=75.1
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCH--HHHHHHHHHhcCceecCeeEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP--EEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~--~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
...+.+|||+||++.++++||..+|+.||.|.+|.|+ +..| +|||||+|.+. .++.+|+..|||..+.|+.|+|.
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp-RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV-RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3456789999999999999999999999999999998 4456 89999999987 78999999999999999999999
Q ss_pred EeeecHHHH
Q 015870 380 LAQRKEDRR 388 (399)
Q Consensus 380 ~a~~~~~~~ 388 (399)
-|++.=.-|
T Consensus 84 KAKP~YLeR 92 (759)
T PLN03213 84 KAKEHYLAR 92 (759)
T ss_pred eccHHHHHH
Confidence 999764433
No 86
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=9e-14 Score=99.57 Aligned_cols=84 Identities=20% Similarity=0.399 Sum_probs=76.8
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+..|+|.++...++++||.+.|..||.|+++.+..+. +|..+|||+|+|++.++|++|+..+||..+.|.+|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 456779999999999999999999999999999987665 8999999999999999999999999999999999999997
Q ss_pred eecHH
Q 015870 382 QRKED 386 (399)
Q Consensus 382 ~~~~~ 386 (399)
=-+.+
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 64443
No 87
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.3e-14 Score=110.66 Aligned_cols=83 Identities=33% Similarity=0.515 Sum_probs=78.2
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
.-++|||++|...+++.-|...|-+||.|.+|+++.+. ++++|||+||+|.-.|||.+|+..||+.++.||.|+|.||+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45799999999999999999999999999999998875 89999999999999999999999999999999999999999
Q ss_pred ecHH
Q 015870 383 RKED 386 (399)
Q Consensus 383 ~~~~ 386 (399)
|-+-
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 8653
No 88
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.6e-13 Score=110.87 Aligned_cols=83 Identities=19% Similarity=0.433 Sum_probs=78.2
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+-+||||.-|++.+++++|+..|+.||.|+.|+|+.+. +|+++|||||+|++.-+...|.+..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 4567899999999999999999999999999999999995 999999999999999999999999999999999999999
Q ss_pred eeec
Q 015870 381 AQRK 384 (399)
Q Consensus 381 a~~~ 384 (399)
.+-+
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 7643
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=3.7e-13 Score=108.63 Aligned_cols=76 Identities=18% Similarity=0.345 Sum_probs=70.4
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
.+.+|+|+||++.++++||+++|+.||.|.+|+|+++ +...++|||+|++.++|..|+ .|+|..|.+++|.|.-+-
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999999887 556689999999999999999 799999999999998754
No 90
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.46 E-value=4.2e-13 Score=113.23 Aligned_cols=167 Identities=18% Similarity=0.231 Sum_probs=130.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhcc----CCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQM----GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~----g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
.+--.|.+|+||.++++.+|.+||..- |....|.++.. ..|+.+|-|||.|..+++|+.|+.. |...++-|.|.
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 456788999999999999999999643 24456666654 4789999999999999999999986 66667767666
Q ss_pred EeeccCC--------------------cc---------cccCCCceEEEcCCCcccCHHHHHHHhcccC-CeE--EEEEe
Q 015870 97 VMYSHRD--------------------PS---------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFG-NIL--SCKVA 144 (399)
Q Consensus 97 v~~~~~~--------------------~~---------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~--~~~~~ 144 (399)
+..+... +. ........|.+++||...+.++|..+|..|. .+. .+.+.
T Consensus 237 lFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv 316 (508)
T KOG1365|consen 237 LFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMV 316 (508)
T ss_pred HHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEE
Confidence 5443210 00 0112245799999999999999999999886 333 36777
Q ss_pred eCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeecccc
Q 015870 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189 (399)
Q Consensus 145 ~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~ 189 (399)
.+..|.+.|-|||+|.+.+.|..|..+.++.....+.+.+-.++.
T Consensus 317 ~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 317 LNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred EcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 888899999999999999999999999998888888888755543
No 91
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=4.6e-13 Score=108.11 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=70.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
+.+.+|+|+||++.+|+++|++||+.||+|.+|.++++. ...++|||+|.++++|..|+. |+|..|.++.|.|..+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 467899999999999999999999999999999999874 444699999999999999996 8999999999999876
Q ss_pred cC
Q 015870 101 HR 102 (399)
Q Consensus 101 ~~ 102 (399)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 53
No 92
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=3e-13 Score=111.90 Aligned_cols=82 Identities=27% Similarity=0.427 Sum_probs=75.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
....++|.|+|||....+.||+.+|.+||+|++|+|+.. ...++||+||+|.+.+||++|...||++.+.||+|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 456689999999999999999999999999999999986 456889999999999999999999999999999999988
Q ss_pred ccCC
Q 015870 100 SHRD 103 (399)
Q Consensus 100 ~~~~ 103 (399)
+...
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 7543
No 93
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=8.4e-14 Score=110.15 Aligned_cols=77 Identities=29% Similarity=0.501 Sum_probs=69.7
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeee
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 383 (399)
++|||+||++.+..++|+++|++||.|+...++.+. .|+++||+||+|.+.++|.+||+. -+-.|+||+-.+.+|--
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 579999999999999999999999999999888876 899999999999999999999965 45678999888887764
No 94
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=3.1e-13 Score=96.88 Aligned_cols=89 Identities=20% Similarity=0.322 Sum_probs=82.4
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 015870 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (399)
Q Consensus 14 ~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~ 93 (399)
.++|.-.-.+-.|+|+++-+.+|+++|.+.|..||+|.+|.+..+..+|..+|||+|+|.+.+.|++|+..+|+..+.|.
T Consensus 63 ~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 63 RPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred CCCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 44566677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEeeccC
Q 015870 94 PIRVMYSHR 102 (399)
Q Consensus 94 ~i~v~~~~~ 102 (399)
.|.|.|.--
T Consensus 143 ~v~VDw~Fv 151 (170)
T KOG0130|consen 143 NVSVDWCFV 151 (170)
T ss_pred ceeEEEEEe
Confidence 999988643
No 95
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=5.2e-13 Score=90.86 Aligned_cols=71 Identities=39% Similarity=0.779 Sum_probs=65.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 25 ~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
+|+|+|||.++++++|+++|.+||+|..+.+..+. +.++|+|||+|.+.++|++|+..+++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998775 677889999999999999999999999899988876
No 96
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.45 E-value=7e-13 Score=84.87 Aligned_cols=56 Identities=38% Similarity=0.701 Sum_probs=51.3
Q ss_pred HHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 322 l~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
|+++|++||.|.++.+.+.. +++|||+|.+.++|..|+..|||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987763 589999999999999999999999999999999996
No 97
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.44 E-value=1.5e-12 Score=115.03 Aligned_cols=124 Identities=31% Similarity=0.569 Sum_probs=107.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccC
Q 015870 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (399)
Q Consensus 23 ~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (399)
.++|||+|||+++++++|+++|.+||.|..+.+..++.++.++|+|||.|.+.++|..|+..+++..|.|+++.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999999531
Q ss_pred ----Cccc------------------ccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC
Q 015870 103 ----DPSL------------------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD 146 (399)
Q Consensus 103 ----~~~~------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~ 146 (399)
.... .......+++.+++..++...+...|..++.+....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 1111 1122356889999999999999999999998865555544
No 98
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=4e-13 Score=95.47 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=73.0
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
-.+++|+|+||+..++++.|.++|++.|.|..|.+-.+. ...+=|||||+|-+.++|..|++.++|..++.++|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 467899999999999999999999999999999876665 4446799999999999999999999999999999999986
Q ss_pred e
Q 015870 382 Q 382 (399)
Q Consensus 382 ~ 382 (399)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 99
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.43 E-value=1.4e-12 Score=89.27 Aligned_cols=74 Identities=38% Similarity=0.696 Sum_probs=69.6
Q ss_pred eEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 307 ~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
+|+|+|||+.+++++|+++|+.||.|..+.+.....+.++|+|+|+|.+.++|..|++.+++..+.|+.+.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48899999999999999999999999999999887777889999999999999999999999999999999875
No 100
>smart00360 RRM RNA recognition motif.
Probab=99.42 E-value=1.1e-12 Score=89.02 Aligned_cols=70 Identities=41% Similarity=0.785 Sum_probs=65.8
Q ss_pred EcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 28 v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
|+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|..|+..+++..+.|+.++|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999988777889999999999999999999999988899988876
No 101
>smart00360 RRM RNA recognition motif.
Probab=99.42 E-value=9.1e-13 Score=89.36 Aligned_cols=70 Identities=41% Similarity=0.729 Sum_probs=65.2
Q ss_pred EecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 310 v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
|+|||..+++++|+++|++||.|..+.+.... ++.++|+|||+|.+.++|..|+..+++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999988876 58889999999999999999999999999999999874
No 102
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=1.9e-14 Score=108.71 Aligned_cols=84 Identities=24% Similarity=0.456 Sum_probs=79.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
..-..+.-|||+|||..+||.||.-.|++||.|++|.+++|+.||+++||||+.|.+..+..-|+..|||..|.|+.|+|
T Consensus 30 ~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 30 QEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred hhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecc
Q 015870 98 MYSH 101 (399)
Q Consensus 98 ~~~~ 101 (399)
-...
T Consensus 110 DHv~ 113 (219)
T KOG0126|consen 110 DHVS 113 (219)
T ss_pred eecc
Confidence 7653
No 103
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=5e-14 Score=106.47 Aligned_cols=77 Identities=23% Similarity=0.470 Sum_probs=73.4
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
++.-|||+|||+..|+.||.-+|++||.|++|.++++. +|+++||||+.|++..+...|+..|||..+.||.|+|..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 45679999999999999999999999999999999987 899999999999999999999999999999999999986
No 104
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.8e-12 Score=106.06 Aligned_cols=81 Identities=22% Similarity=0.401 Sum_probs=77.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
..+=+||||+-|+.+++|.+|+..|+.||+|..|.+++++.+|+++|||||+|.++.+...|.+..++..|+|+.|.|-+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred c
Q 015870 100 S 100 (399)
Q Consensus 100 ~ 100 (399)
-
T Consensus 178 E 178 (335)
T KOG0113|consen 178 E 178 (335)
T ss_pred c
Confidence 4
No 105
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=2.1e-12 Score=112.68 Aligned_cols=79 Identities=24% Similarity=0.388 Sum_probs=72.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCH--HHHHHHHHHhCCCCCCCcccEE
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA--QEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~--~~A~~a~~~l~~~~~~g~~i~v 97 (399)
...+.+|||+||++.+++++|...|..||.|.++.|++. +| +|||||+|.+. .++.+|+..|++..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 345689999999999999999999999999999999954 66 79999999988 7899999999999999999999
Q ss_pred eeccC
Q 015870 98 MYSHR 102 (399)
Q Consensus 98 ~~~~~ 102 (399)
..+++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 98864
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.37 E-value=1.7e-12 Score=116.06 Aligned_cols=85 Identities=26% Similarity=0.482 Sum_probs=79.3
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeec
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 384 (399)
+.|+|+|+|+++++++|.++|+..|.|.++++..+. +|+.+||+|++|.+.++|..|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 889999999999999999999999999999998886 8999999999999999999999999999999999999999866
Q ss_pred HHHHHH
Q 015870 385 EDRRAR 390 (399)
Q Consensus 385 ~~~~~~ 390 (399)
+.+.+.
T Consensus 99 ~~~~~~ 104 (435)
T KOG0108|consen 99 KNAERS 104 (435)
T ss_pred chhHHH
Confidence 654433
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=5.5e-12 Score=86.26 Aligned_cols=74 Identities=43% Similarity=0.819 Sum_probs=67.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 25 ~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
+|+|+|||+.+++++|+++|..+|.|..+.+..+..+ ..+|+|||+|.+.++|+.|+..+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999877543 6678999999999999999999999989999988753
No 108
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=4.4e-15 Score=137.58 Aligned_cols=322 Identities=17% Similarity=0.154 Sum_probs=229.8
Q ss_pred cEEEEcCCCCCCCHHHHH-HHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccC
Q 015870 24 TSLYVGDLEANVTDSQLY-DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~-~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (399)
+..+|-|-|...+...|. .+|+-++-+.. .....+.....+.|++.-.++++|..++..+.......-++.+.-+..
T Consensus 480 ~~R~iWn~imty~~~~iag~Wle~~~lE~~--~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~ 557 (881)
T KOG0128|consen 480 KAREIWNFIMTYGGGSIAGKWLEAINLERE--YGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCP 557 (881)
T ss_pred hhhHhhhccccCCcchHHHHHHHHHhHHHH--hCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhH
Confidence 456677788888888888 66665532111 001111222456899999999999999988765433333322211111
Q ss_pred -----CcccccCCCceEEEcCCCcccCHH-HHHHHhcccCCeEEEEEeeCCC-CCceeEEEEEecCHHHHHHHHHHhcCC
Q 015870 103 -----DPSLRKSGAGNIFIKNLDKAIDHK-ALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGM 175 (399)
Q Consensus 103 -----~~~~~~~~~~~l~v~nlp~~~t~~-~l~~~f~~~g~v~~~~~~~~~~-~~~~g~a~v~f~~~~~a~~a~~~l~~~ 175 (399)
.............+.++.+...+. ..+..|..++.++.+....... .....++++.+.....+..+.. ..+.
T Consensus 558 ~~~~pr~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~ 636 (881)
T KOG0128|consen 558 EKVLPRVYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGG 636 (881)
T ss_pred HhhcchhhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-cccc
Confidence 111112223446677777766555 6778889999999888877321 2222267888888888888876 5666
Q ss_pred ccCCceeeeecccccccchhhccc----CCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEE-ECCCCCeeeEEEEEe
Q 015870 176 LLNDKQVYVGHFLRKQERDTEINK----SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM-RDGDGKSKCFGFVNF 250 (399)
Q Consensus 176 ~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~-~~~~~~~~g~~~v~f 250 (399)
.+.++...+....+.......... ....++|+.||+..+..+++...|..+|.+..+.+. ....+.-+|.||+.|
T Consensus 637 ~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F 716 (881)
T KOG0128|consen 637 ALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEF 716 (881)
T ss_pred ccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEe
Confidence 667777666555444322221111 223457899999999999999999999988777666 446677889999999
Q ss_pred CCHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcC
Q 015870 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG 330 (399)
Q Consensus 251 ~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G 330 (399)
...+++.+|+....++.+. + ..|+|.|.|+..|.+.++.+++.+|
T Consensus 717 ~~~~~~~aaV~f~d~~~~g-K----------------------------------~~v~i~g~pf~gt~e~~k~l~~~~g 761 (881)
T KOG0128|consen 717 LKPEHAGAAVAFRDSCFFG-K----------------------------------ISVAISGPPFQGTKEELKSLASKTG 761 (881)
T ss_pred ecCCchhhhhhhhhhhhhh-h----------------------------------hhhheeCCCCCCchHHHHhhccccC
Confidence 9999999998744444433 1 2588999999999999999999999
Q ss_pred CceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeee
Q 015870 331 SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (399)
Q Consensus 331 ~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 383 (399)
++.+++++...+|+++|.|+|.|.+..+|.......+...+..+.+.|....|
T Consensus 762 n~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 762 NVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 99999999999999999999999999999999999999999888888888554
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=99.34 E-value=5.3e-12 Score=84.67 Aligned_cols=61 Identities=26% Similarity=0.546 Sum_probs=53.4
Q ss_pred HHHHHHhhc----CcCCceEEE-EeeC-CC--CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 319 DEKLKQLFS----PFGSITSCK-VMRD-PS--GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 319 ~~dl~~~f~----~~G~v~~v~-~~~~-~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
++||+++|+ +||.|.++. +..+ .+ +.++|+|||+|.+.++|.+|+..|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578889998 999999995 4433 34 8899999999999999999999999999999999863
No 110
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2e-12 Score=100.92 Aligned_cols=84 Identities=30% Similarity=0.543 Sum_probs=80.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
...-++|||++|...+++.-|...|-+||+|.+|.++.|..+++.+||+||+|.-.+||..|+..||+..+.|++|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 015870 100 SHRD 103 (399)
Q Consensus 100 ~~~~ 103 (399)
+.+.
T Consensus 87 AkP~ 90 (298)
T KOG0111|consen 87 AKPE 90 (298)
T ss_pred cCCc
Confidence 9765
No 111
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.27 E-value=1.8e-11 Score=109.51 Aligned_cols=81 Identities=31% Similarity=0.611 Sum_probs=78.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccCC
Q 015870 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (399)
+.|+|+|+|+++++++|.++|+..|+|.++.++.|+.+|+.+||||++|.+.++|.+|++.|++..+.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred c
Q 015870 104 P 104 (399)
Q Consensus 104 ~ 104 (399)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 112
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.25 E-value=2.7e-11 Score=77.46 Aligned_cols=56 Identities=34% Similarity=0.794 Sum_probs=50.3
Q ss_pred HHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 40 l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
|+++|++||.|.++.+..++ +++|||+|.+.++|++|+..||+..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997664 369999999999999999999999999999999875
No 113
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=2.4e-11 Score=108.23 Aligned_cols=153 Identities=21% Similarity=0.276 Sum_probs=101.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
.-+.++|+|-|||..+++++|++.|+.||+|..|..-.. .+|..||+|.+..+|+.|++.|+...+.|+.++-..
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 667899999999999999999999999999998765433 347999999999999999999999999998887211
Q ss_pred ccCC--------------------cccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEe
Q 015870 100 SHRD--------------------PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159 (399)
Q Consensus 100 ~~~~--------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f 159 (399)
.... ..........+ +..|+|..+...+...+.-+|.+.. ..... -...-+++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~~~~----~~hq~~~~~ 220 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISSVDGSSPG-RETPL----LNHQRFVEF 220 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchhccCcccc-ccccc----hhhhhhhhh
Confidence 1100 00011111223 3338888887666666676776644 21111 111456677
Q ss_pred cCHHHHHHHHHHhcCCccCCceeee
Q 015870 160 DNEESAQKAIEKLNGMLLNDKQVYV 184 (399)
Q Consensus 160 ~~~~~a~~a~~~l~~~~~~~~~~~v 184 (399)
.+..++..+.... |..+.+..-.+
T Consensus 221 ~~~~s~a~~~~~~-G~~~s~~~~v~ 244 (549)
T KOG4660|consen 221 ADNRSYAFSEPRG-GFLISNSSGVI 244 (549)
T ss_pred ccccchhhcccCC-ceecCCCCceE
Confidence 7776664444432 45555544333
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=99.21 E-value=5.9e-11 Score=79.56 Aligned_cols=61 Identities=25% Similarity=0.412 Sum_probs=54.7
Q ss_pred HHHHHHHHh----ccCCeEEEE-EeeeCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 37 DSQLYDLFN----QMGQVVSVR-VCRDLST--RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 37 ~~~l~~~f~----~~g~v~~i~-~~~~~~~--~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
+++|+++|+ .||.|.++. ++.++.+ +.++|+|||.|.+.++|.+|+..||+..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999996 6666666 889999999999999999999999999999999876
No 115
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.20 E-value=1.8e-10 Score=104.90 Aligned_cols=180 Identities=14% Similarity=0.047 Sum_probs=122.6
Q ss_pred EEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccchH
Q 015870 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283 (399)
Q Consensus 205 l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~ 283 (399)
+.+.+++.+....|++.+|...- +....+... -.+...|.++|+|....++..|+.. +...+-.+.+.+........
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~~ 391 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLGR 391 (944)
T ss_pred eeecccccccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcccc
Confidence 55677888888899999987532 222222222 1223367899999999999999753 33333445554433321110
Q ss_pred HHHHH----------HHH----HH-------HhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceE-EEEeeCC
Q 015870 284 RELEL----------KHQ----FE-------QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITS-CKVMRDP 341 (399)
Q Consensus 284 ~~~~~----------~~~----~~-------~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~-v~~~~~~ 341 (399)
-.+.. ... .. .......+...+.+|||..||..+++.++.++|..-..|++ |.|.+.+
T Consensus 392 ~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P 471 (944)
T KOG4307|consen 392 NGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP 471 (944)
T ss_pred ccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC
Confidence 00000 000 00 00001123345678999999999999999999988767776 8888888
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecHH
Q 015870 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386 (399)
Q Consensus 342 ~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 386 (399)
+++.++.|||.|...+++..|...-+...++.|.|+|.-...+++
T Consensus 472 ~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 472 TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred cccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 999999999999999999999988899999999999987666555
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=4.8e-11 Score=99.98 Aligned_cols=87 Identities=29% Similarity=0.486 Sum_probs=81.2
Q ss_pred hhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 015870 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (399)
Q Consensus 300 ~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 378 (399)
...+|...|||.-|++-++++||.-+|+.||.|.++.++++. +|-+-.||||+|++.+++.+|.-.|++..|..+.|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 346788999999999999999999999999999999998886 7888899999999999999999999999999999999
Q ss_pred EEeeecHH
Q 015870 379 ALAQRKED 386 (399)
Q Consensus 379 ~~a~~~~~ 386 (399)
.|+.+...
T Consensus 314 DFSQSVsk 321 (479)
T KOG0415|consen 314 DFSQSVSK 321 (479)
T ss_pred ehhhhhhh
Confidence 99987765
No 117
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=2.6e-10 Score=100.67 Aligned_cols=164 Identities=30% Similarity=0.448 Sum_probs=122.3
Q ss_pred cceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEecccc
Q 015870 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (399)
Q Consensus 202 ~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~ 280 (399)
..++||+|||..+++++|.++|..||.+..+.+..+ ..+.++|+|||.|.+.+++..|+..+++..+.|+.+.+.....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999999999888 4789999999999999999999999999999999999999653
Q ss_pred ----chHHHH--HHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCC-cccEEEEEe
Q 015870 281 ----KSEREL--ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI-SRGSGFVAF 353 (399)
Q Consensus 281 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~-~~g~afV~f 353 (399)
...... .....................+++.+++..++..++...|..+|.+....+.....+. .....++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 111110 0000001111222334567789999999999999999999999999777665554322 333344455
Q ss_pred CCHHHHHHHHHH
Q 015870 354 STPEEASRALLE 365 (399)
Q Consensus 354 ~~~~~A~~A~~~ 365 (399)
....++......
T Consensus 275 ~~~~~~~~~~~~ 286 (306)
T COG0724 275 EASKDALESNSR 286 (306)
T ss_pred hHHHhhhhhhcc
Confidence 555555444443
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.12 E-value=1.3e-10 Score=107.14 Aligned_cols=81 Identities=23% Similarity=0.450 Sum_probs=76.6
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
.-++||||++|+..+++.||..+|+.||.|.+|.++.. +++|||.+..+.+|.+|+.+|++..+.++.|+|.||.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 45789999999999999999999999999999998776 8899999999999999999999999999999999999
Q ss_pred ecHHHH
Q 015870 383 RKEDRR 388 (399)
Q Consensus 383 ~~~~~~ 388 (399)
.+..+-
T Consensus 494 g~G~ks 499 (894)
T KOG0132|consen 494 GKGPKS 499 (894)
T ss_pred cCCcch
Confidence 888776
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.9e-09 Score=94.40 Aligned_cols=154 Identities=21% Similarity=0.286 Sum_probs=115.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCC--CCccc---EEEEEeCCHHHHHHHHHHhCCC----
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST--RRSLG---YGYVNFSNAQEAARALEMLNFT---- 88 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~--~~~~g---~a~V~f~~~~~A~~a~~~l~~~---- 88 (399)
..+.-++.|+|++||++++|+.|...|..||.+.--+..+.... -..+| |+|+.|+++.+.+..+..+...
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccce
Confidence 34677899999999999999999999999997654443222222 23466 9999999999999988876531
Q ss_pred C-------CCCcccEEeeccC-------CcccccCCCceEEEcCCCcccCHHHHHHHhc-ccCCeEEEEEeeC-CCCCce
Q 015870 89 P-------LNGKPIRVMYSHR-------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFS-AFGNILSCKVATD-LNGQSK 152 (399)
Q Consensus 89 ~-------~~g~~i~v~~~~~-------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~g~v~~~~~~~~-~~~~~~ 152 (399)
+ +..+.+.|..+.- +....-...+++||++||..++.++|..+|+ .||.|..+-|=.+ .-+=++
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 1 1223344433221 1222334568999999999999999999998 8999998888777 345578
Q ss_pred eEEEEEecCHHHHHHHHHH
Q 015870 153 GYGFVQFDNEESAQKAIEK 171 (399)
Q Consensus 153 g~a~v~f~~~~~a~~a~~~ 171 (399)
|.|=|+|.+...-.+|+..
T Consensus 414 GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcceeeecccHHHHHHHhh
Confidence 8999999999999999974
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=2e-10 Score=96.36 Aligned_cols=75 Identities=25% Similarity=0.454 Sum_probs=68.3
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh-cCceecCeeEEEEEee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM-NGKMVVSKPLYVALAQ 382 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~~~~~~g~~l~v~~a~ 382 (399)
...+|||++|...+++.||+++|.+||.|.++++... +++|||+|.|.++|..|.... +...++|++|.|.|.+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 4568999999999999999999999999999999887 679999999999999988777 5556699999999999
Q ss_pred e
Q 015870 383 R 383 (399)
Q Consensus 383 ~ 383 (399)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 121
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=8e-11 Score=92.10 Aligned_cols=152 Identities=24% Similarity=0.343 Sum_probs=121.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
+..+..+||+|.|+-..++|+.|.++|-+.|+|..+.|..++. +..+ ||||.|.++-+..-|+..+|+..+.+.++++
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 3456678999999999999999999999999999999987754 4555 9999999999999999999999999999998
Q ss_pred eeccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc
Q 015870 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177 (399)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~ 177 (399)
.+-...... -|...++.+.+...++..+.+..+.+..+.++.++.++++.+-.....-.++....++..
T Consensus 82 ~~r~G~sha-----------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 82 TLRCGNSHA-----------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred ccccCCCcc-----------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 754332111 134457888888999999999998888888888888888887777666666766565554
Q ss_pred CCcee
Q 015870 178 NDKQV 182 (399)
Q Consensus 178 ~~~~~ 182 (399)
.-+.+
T Consensus 151 ~~~~~ 155 (267)
T KOG4454|consen 151 FQKKV 155 (267)
T ss_pred CCCCc
Confidence 44433
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=2.7e-11 Score=112.96 Aligned_cols=237 Identities=17% Similarity=0.141 Sum_probs=187.1
Q ss_pred CCCccEEEEcCCCCCCCHH-HHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 20 QFGTTSLYVGDLEANVTDS-QLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~-~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
+...+...+.++-+..... ..+..|..+|.|..|.+......-....+.++.+....+++.|.. ..+..+.++...+.
T Consensus 568 ~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~ 646 (881)
T KOG0128|consen 568 PLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVG 646 (881)
T ss_pred hhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCC
Confidence 4455667778887776665 567889999999999887632222222278899999999999987 47777888888887
Q ss_pred eccCCcccccC--------CCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHH
Q 015870 99 YSHRDPSLRKS--------GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169 (399)
Q Consensus 99 ~~~~~~~~~~~--------~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~ 169 (399)
.++..+..... ...+++++||++.+.+.++...|..++.+..+.+.-. ..+..+|+||+.|..++++.+|+
T Consensus 647 ~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 647 LADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred CCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhh
Confidence 77655432221 1346889999999999999999999998877766633 56778999999999999999999
Q ss_pred HHhcCCccCCceeeeecccccccchhhcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEE
Q 015870 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249 (399)
Q Consensus 170 ~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~ 249 (399)
....+..++ -..++|.|.|+..|.+.+..+++.+|.+....++....|.++|.+++.
T Consensus 727 ~f~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~ 783 (881)
T KOG0128|consen 727 AFRDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVD 783 (881)
T ss_pred hhhhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceecc
Confidence 865544433 134789999999999999999999999999998888889999999999
Q ss_pred eCCHHHHHHHHHHhCCCccCCceeEEecccc
Q 015870 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (399)
Q Consensus 250 f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~ 280 (399)
|.+..++.++........+..+.+.+..+.|
T Consensus 784 y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 784 YNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 9999999999888887777777776666443
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5e-10 Score=93.98 Aligned_cols=89 Identities=26% Similarity=0.383 Sum_probs=82.7
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 015870 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (399)
Q Consensus 14 ~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~ 93 (399)
=+....-++.+.|||-.|.+-+|.++|.-+|+.||+|.++.|+++..+|.+-.||||+|.+.++..+|.-.|++..|+++
T Consensus 230 lpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 230 LPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred CcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence 34455578889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEeeccC
Q 015870 94 PIRVMYSHR 102 (399)
Q Consensus 94 ~i~v~~~~~ 102 (399)
.|+|-++.+
T Consensus 310 RIHVDFSQS 318 (479)
T KOG0415|consen 310 RIHVDFSQS 318 (479)
T ss_pred eEEeehhhh
Confidence 999998864
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.97 E-value=1.8e-09 Score=84.16 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=72.9
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCc-CCceEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPF-GSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~-G~v~~v~~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
.....++|..+|.-+.+..+..+|.+| |.|..+++-++ .+|+++|||||+|++.+.|.-|-+.||++.|.|+-|.+.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 344568999999999999999999888 67888888555 4999999999999999999999999999999999999998
Q ss_pred eeec
Q 015870 381 AQRK 384 (399)
Q Consensus 381 a~~~ 384 (399)
--|-
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7655
No 125
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=6.1e-09 Score=92.37 Aligned_cols=162 Identities=17% Similarity=0.312 Sum_probs=112.8
Q ss_pred CcceEEeecCCcCccHHHHHHHhcccCCeeEEEE---EECCCCCeee---EEEEEeCCHHHHHHHHHHhCCCccCCceeE
Q 015870 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV---MRDGDGKSKC---FGFVNFENSDDAARAVEALNGKKFDDKEWY 274 (399)
Q Consensus 201 ~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~---~~~~~~~~~g---~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~ 274 (399)
-++.+|+++||+.++++.|...|..||.+.--=- ........+| ++|+.|+++..+...+....- ....+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccceE
Confidence 3567999999999999999999999997542111 1111223455 999999999888887665433 334444
Q ss_pred EeccccchHHH-HH-HHHHHHHh-h--HHhhhccCCceEEEecCCCcCCHHHHHHhhc-CcCCceEEEEeeC-CCCCccc
Q 015870 275 VGKAQKKSERE-LE-LKHQFEQN-M--KEAADKFQGANLYIKNLDDSIDDEKLKQLFS-PFGSITSCKVMRD-PSGISRG 347 (399)
Q Consensus 275 v~~~~~~~~~~-~~-~~~~~~~~-~--~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~-~~G~v~~v~~~~~-~~~~~~g 347 (399)
.....+..... .+ .+...... . .....-.+.+||||++||-.++.++|..+|. -||.|..+-|.++ +-+.++|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 43332221111 00 00000000 0 0111234788999999999999999999997 6999999999998 5788999
Q ss_pred EEEEEeCCHHHHHHHHHH
Q 015870 348 SGFVAFSTPEEASRALLE 365 (399)
Q Consensus 348 ~afV~f~~~~~A~~A~~~ 365 (399)
-+-|+|.+..+-.+||.+
T Consensus 415 aGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cceeeecccHHHHHHHhh
Confidence 999999999999999964
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.94 E-value=4e-09 Score=82.32 Aligned_cols=88 Identities=23% Similarity=0.333 Sum_probs=79.1
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhcc-CCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcc
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~-g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~ 94 (399)
..+.......++|..+|.-+.+.++..+|.++ |+|....+.+.+.||.++|||||+|.+++.|.-|-..||+..+.|+.
T Consensus 42 ~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~l 121 (214)
T KOG4208|consen 42 EKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHL 121 (214)
T ss_pred cCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhe
Confidence 34556777889999999999999999999998 78888888899999999999999999999999999999999999999
Q ss_pred cEEeeccCC
Q 015870 95 IRVMYSHRD 103 (399)
Q Consensus 95 i~v~~~~~~ 103 (399)
+.+.+-++.
T Consensus 122 L~c~vmppe 130 (214)
T KOG4208|consen 122 LECHVMPPE 130 (214)
T ss_pred eeeEEeCch
Confidence 988776544
No 127
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.93 E-value=2.5e-09 Score=98.94 Aligned_cols=106 Identities=19% Similarity=0.314 Sum_probs=86.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeecc
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (399)
=++||||++||.++++.||.++|+.||.|.+|.++... |||||.+.+-.+|.+|+..|++..+.++.|+|.|+-
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 47899999999999999999999999999999887653 599999999999999999999999999999999985
Q ss_pred CCc---ccccCCCceEEEcCCCcccCHHHHHHHhc
Q 015870 102 RDP---SLRKSGAGNIFIKNLDKAIDHKALHDTFS 133 (399)
Q Consensus 102 ~~~---~~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 133 (399)
..- ..+..+...+=|+=||++.-..++..+..
T Consensus 494 g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 494 GKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred cCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 432 22334445566777888765555555443
No 128
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.93 E-value=3.6e-09 Score=87.02 Aligned_cols=81 Identities=27% Similarity=0.479 Sum_probs=75.1
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 383 (399)
...+|+|.|||+.++++||+++|..||.+..+-+-.+++|.+.|.|-|.|...+||.+|++.++|..++|+.|.+....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 34679999999999999999999999999988888889999999999999999999999999999999999999988654
Q ss_pred c
Q 015870 384 K 384 (399)
Q Consensus 384 ~ 384 (399)
-
T Consensus 162 ~ 162 (243)
T KOG0533|consen 162 P 162 (243)
T ss_pred c
Confidence 3
No 129
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=4.5e-09 Score=88.37 Aligned_cols=84 Identities=25% Similarity=0.453 Sum_probs=74.8
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCCCC
Q 015870 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML-NFTPLN 91 (399)
Q Consensus 13 ~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l-~~~~~~ 91 (399)
+...++.....++|||++|-..+++.+|+++|.+||.|.+|.+.... ++|||+|.+.++|+.|...+ +...|+
T Consensus 218 ~~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~ 291 (377)
T KOG0153|consen 218 GTLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVIN 291 (377)
T ss_pred cccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeec
Confidence 33668888999999999999999999999999999999999998764 39999999999999999874 456789
Q ss_pred CcccEEeeccC
Q 015870 92 GKPIRVMYSHR 102 (399)
Q Consensus 92 g~~i~v~~~~~ 102 (399)
|.+|+|.|.++
T Consensus 292 G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 292 GFRLKIKWGRP 302 (377)
T ss_pred ceEEEEEeCCC
Confidence 99999999876
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.92 E-value=1.3e-08 Score=71.36 Aligned_cols=77 Identities=22% Similarity=0.379 Sum_probs=64.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcc--CCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC----CcccEE
Q 015870 24 TSLYVGDLEANVTDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN----GKPIRV 97 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~~~--g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~----g~~i~v 97 (399)
+||+|+|||...|.++|.+.+... |..--+-++.|..++.+.|||||.|.++++|.+....++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999988654 56666777888888999999999999999999999999988764 334455
Q ss_pred eec
Q 015870 98 MYS 100 (399)
Q Consensus 98 ~~~ 100 (399)
.++
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 554
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.88 E-value=3.9e-09 Score=94.20 Aligned_cols=81 Identities=28% Similarity=0.460 Sum_probs=74.4
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..++.|||.+|...+...||+.+|++||.|+..+++++. ..-.++|+||+|.+.++|.+-|.-||...++|+.|.|.-+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 356779999999999999999999999999999998875 5557899999999999999999999999999999999988
Q ss_pred ee
Q 015870 382 QR 383 (399)
Q Consensus 382 ~~ 383 (399)
++
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 74
No 132
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=1.1e-09 Score=85.94 Aligned_cols=169 Identities=22% Similarity=0.261 Sum_probs=132.3
Q ss_pred CCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccc
Q 015870 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (399)
Q Consensus 200 ~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~ 279 (399)
+...+|+|+|+...++++.|.++|.+-|+|..+.|+...++..+ +|||.|.++....-|+.-++|..+.+..+.+.+..
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 34578999999999999999999999999999999888777766 99999999999999999999999999998886654
Q ss_pred cchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHH
Q 015870 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEA 359 (399)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A 359 (399)
..... -|...++.+-+...|+.-|.+..+++.+..+|+++.+.|+++--..+.
T Consensus 86 G~sha---------------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 86 GNSHA---------------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred CCCcc---------------------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcC
Confidence 21111 155677888889999999999999999998999999999998766666
Q ss_pred HHHHHHhcCc-----------eecCeeEEEEEeeecHHHHHHhhhhhh
Q 015870 360 SRALLEMNGK-----------MVVSKPLYVALAQRKEDRRARLQVCLL 396 (399)
Q Consensus 360 ~~A~~~l~~~-----------~~~g~~l~v~~a~~~~~~~~~~~~~~~ 396 (399)
-.++....+. ..+|+.+--++..|..-.+....+|-|
T Consensus 139 P~~~~~y~~l~~~~~~~~~ggk~Gg~~lpqsgfsPs~~~hsh~~NQ~m 186 (267)
T KOG4454|consen 139 PFALDLYQGLELFQKKVTIGGKQGGKQLPQSGFSPSAYNHSHLRNQFM 186 (267)
T ss_pred cHHhhhhcccCcCCCCcccccccCCCcCCcccCCccccchHHHHHHHH
Confidence 6666554443 234566665555555555544444443
No 133
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.79 E-value=5.6e-08 Score=68.11 Aligned_cols=78 Identities=24% Similarity=0.299 Sum_probs=67.7
Q ss_pred ceEEEecCCCcCCHHHHHHhhcC--cCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceec----CeeEEE
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSP--FGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVV----SKPLYV 378 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~--~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~----g~~l~v 378 (399)
+||.|+|||...+.++|.+++.. .|....+.++-+. ++-+.|||||.|.+++.|..-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999854 3677788887775 6668999999999999999999999999885 578899
Q ss_pred EEeee
Q 015870 379 ALAQR 383 (399)
Q Consensus 379 ~~a~~ 383 (399)
.||+=
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 99983
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.79 E-value=3.6e-08 Score=81.23 Aligned_cols=84 Identities=31% Similarity=0.487 Sum_probs=75.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
.+....+|+|.|||..++++||+++|..||.+..+.+-.+ ..|.+.|.|-|.|...+||.+|+..+++..++|+.+++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 4555689999999999999999999999998888888776 579999999999999999999999999999999999887
Q ss_pred eccCC
Q 015870 99 YSHRD 103 (399)
Q Consensus 99 ~~~~~ 103 (399)
...+.
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 76544
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=5.8e-09 Score=98.20 Aligned_cols=159 Identities=18% Similarity=0.285 Sum_probs=131.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
+.+.+++|+++||+..+++.+|+..|..+|.|.+|.|.... .+.-.-+|||.|.+..++-.|...+.+..|....+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 37789999999999999999999999999999999887653 23444599999999999999999998888876677766
Q ss_pred eccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC
Q 015870 99 YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178 (399)
Q Consensus 99 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 178 (399)
+... .....+.+++++|++.+....+...|..||.|..|.+-.. ..|+||.|.+...+..|...+.+..++
T Consensus 447 lG~~----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap~G 517 (975)
T KOG0112|consen 447 LGQP----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGAPLG 517 (975)
T ss_pred cccc----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcCcCC
Confidence 5532 2334567999999999999999999999999988776543 559999999999999999999998886
Q ss_pred Cc--eeeeecc
Q 015870 179 DK--QVYVGHF 187 (399)
Q Consensus 179 ~~--~~~v~~~ 187 (399)
+- .+.+.+.
T Consensus 518 ~P~~r~rvdla 528 (975)
T KOG0112|consen 518 GPPRRLRVDLA 528 (975)
T ss_pred CCCcccccccc
Confidence 53 4444433
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=5.7e-09 Score=98.24 Aligned_cols=159 Identities=19% Similarity=0.283 Sum_probs=134.9
Q ss_pred ceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccch
Q 015870 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282 (399)
Q Consensus 203 ~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~ 282 (399)
.+|+++|++..+++.+|...|..+|.+..+.+.....+....++|+.|.+...+..|...+.+..+....+...+..+
T Consensus 373 rTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~-- 450 (975)
T KOG0112|consen 373 RTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP-- 450 (975)
T ss_pred hhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc--
Confidence 569999999999999999999999999999988775555566899999999999999998988887766665555432
Q ss_pred HHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHH
Q 015870 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362 (399)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A 362 (399)
....++.+++++|+..+....|...|..||.|..|.+... .-||.|.+++...|+.|
T Consensus 451 ------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a 507 (975)
T KOG0112|consen 451 ------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAA 507 (975)
T ss_pred ------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhh
Confidence 1234577999999999999999999999999998876554 34899999999999999
Q ss_pred HHHhcCceecC--eeEEEEEeeecHH
Q 015870 363 LLEMNGKMVVS--KPLYVALAQRKED 386 (399)
Q Consensus 363 ~~~l~~~~~~g--~~l~v~~a~~~~~ 386 (399)
++.+.|..|+| +.++|.||.+--.
T Consensus 508 ~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 508 THDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred HHHHhcCcCCCCCcccccccccCCCC
Confidence 99999999975 6899999986443
No 137
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.73 E-value=2.8e-08 Score=88.94 Aligned_cols=84 Identities=29% Similarity=0.491 Sum_probs=76.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
--++.|||++|...+..-+|+.+|++||.|+..+|+..-.+-..+.|+||++.+.++|.+||..||.+.+.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34678999999999999999999999999999999998877777889999999999999999999999999999999988
Q ss_pred cCCc
Q 015870 101 HRDP 104 (399)
Q Consensus 101 ~~~~ 104 (399)
+..+
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 7543
No 138
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.70 E-value=7.9e-09 Score=88.59 Aligned_cols=177 Identities=22% Similarity=0.240 Sum_probs=136.0
Q ss_pred cceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEecccc
Q 015870 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (399)
Q Consensus 202 ~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~ 280 (399)
..+.+++++...+...+...++..+|......+... .....++++++.|...+.+..++.........++.+.......
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~ 167 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTR 167 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccc
Confidence 466889999999988888889999987776665553 5567889999999999999999986665566666555444332
Q ss_pred chHHHHHHHHHHHHhhHHhhhccCCceE-EEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHH
Q 015870 281 KSERELELKHQFEQNMKEAADKFQGANL-YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358 (399)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~ 358 (399)
.... ...... ........++ ++.+++..+++++|+.+|..+|.|..++++..+ .+...|+|+|.|.+...
T Consensus 168 ~~~~-------~~n~~~-~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~ 239 (285)
T KOG4210|consen 168 RGLR-------PKNKLS-RLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNS 239 (285)
T ss_pred cccc-------ccchhc-ccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchh
Confidence 2200 000000 1112233344 499999999999999999999999999988876 78899999999999999
Q ss_pred HHHHHHHhcCceecCeeEEEEEeeecHHH
Q 015870 359 ASRALLEMNGKMVVSKPLYVALAQRKEDR 387 (399)
Q Consensus 359 A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 387 (399)
+..++.. ....+.++++.+.+..++..+
T Consensus 240 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 240 KKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred HHHHhhc-ccCcccCcccccccCCCCccc
Confidence 9999988 899999999999999877543
No 139
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.69 E-value=1.4e-07 Score=62.52 Aligned_cols=71 Identities=30% Similarity=0.422 Sum_probs=48.4
Q ss_pred cEEEEcCCCCCCCHHHHH----HHHhccC-CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 24 TSLYVGDLEANVTDSQLY----DLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~----~~f~~~g-~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
..|+|.|||.+.+...|+ +++..+| .|.+|. + +.|+|.|.+.+.|.+|.+.|++..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------G---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------C---CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 479999999999987754 4555775 777662 1 389999999999999999999999999999999
Q ss_pred eccCCc
Q 015870 99 YSHRDP 104 (399)
Q Consensus 99 ~~~~~~ 104 (399)
+.+...
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 986543
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.68 E-value=6.2e-08 Score=86.62 Aligned_cols=81 Identities=20% Similarity=0.364 Sum_probs=69.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
.....+|+|+|||.++++++|+++|..||+|....|......++...||||+|.+.++++.|+.+ +...++++++.|+-
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 44455599999999999999999999999999988877654455557999999999999999996 67889999999976
Q ss_pred cc
Q 015870 100 SH 101 (399)
Q Consensus 100 ~~ 101 (399)
-.
T Consensus 364 k~ 365 (419)
T KOG0116|consen 364 KR 365 (419)
T ss_pred cc
Confidence 44
No 141
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.61 E-value=2.6e-08 Score=80.16 Aligned_cols=154 Identities=28% Similarity=0.421 Sum_probs=113.3
Q ss_pred HHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHHHHHHHHhhHHh
Q 015870 220 QKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299 (399)
Q Consensus 220 ~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 299 (399)
...|+-+-.+....+++...+.-++.+|+.|.....-..+...-.+..+....++..-...-.... ..
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPs------------l~ 184 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPS------------LA 184 (290)
T ss_pred hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcc------------cc
Confidence 556666666666666766666777889999987777777666666666666655543332111000 00
Q ss_pred hhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 015870 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (399)
Q Consensus 300 ~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 378 (399)
.-......||-+.|..+++++-|-..|.+|-.....+++++. +|+++||+||.|.+..|+..|+..++|..++.|+|++
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 012345679999999999999999999999888777777765 8999999999999999999999999999999999988
Q ss_pred EEeeecH
Q 015870 379 ALAQRKE 385 (399)
Q Consensus 379 ~~a~~~~ 385 (399)
.-..-++
T Consensus 265 RkS~wke 271 (290)
T KOG0226|consen 265 RKSEWKE 271 (290)
T ss_pred hhhhHHh
Confidence 6544333
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=2.5e-08 Score=89.37 Aligned_cols=72 Identities=26% Similarity=0.468 Sum_probs=65.3
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 377 (399)
..+.++|+|-|||..++.++|+.+|..||.|..|+..+. .+|.+||+|-++.+|.+|+++|++.++.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345689999999999999999999999999999876554 467899999999999999999999999999888
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.57 E-value=1e-07 Score=81.85 Aligned_cols=169 Identities=21% Similarity=0.288 Sum_probs=133.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
...++.+++++-+++.+.++..++..+|...............++|++++.|...+.+..|+.........++.+..-..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46899999999999999999999999997777777766677889999999999999999999864333444444433332
Q ss_pred cCCc---------ccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHH
Q 015870 101 HRDP---------SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170 (399)
Q Consensus 101 ~~~~---------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~~ 170 (399)
.... .........+++.+++.+++.++|...|..+|.+..+.+... ..+...+++|+.|.+...+..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 2221 111122233449999999999999999999999999988888 668899999999999999999998
Q ss_pred HhcCCccCCceeeeeccccc
Q 015870 171 KLNGMLLNDKQVYVGHFLRK 190 (399)
Q Consensus 171 ~l~~~~~~~~~~~v~~~~~~ 190 (399)
. +...+.+..+.+....+.
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred c-ccCcccCcccccccCCCC
Confidence 7 778888888888665443
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.51 E-value=2.1e-07 Score=83.27 Aligned_cols=82 Identities=21% Similarity=0.336 Sum_probs=70.3
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
...+|||.|||.+++.++|+++|.+||.|+...|.... .++..+||||+|.+.+++..|+.+ +-..+++++|.|+-.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 34559999999999999999999999999998886654 455559999999999999999966 5888899999999988
Q ss_pred ecHH
Q 015870 383 RKED 386 (399)
Q Consensus 383 ~~~~ 386 (399)
+...
T Consensus 366 ~~~~ 369 (419)
T KOG0116|consen 366 PGFR 369 (419)
T ss_pred cccc
Confidence 6443
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.51 E-value=3.8e-07 Score=84.04 Aligned_cols=83 Identities=29% Similarity=0.454 Sum_probs=73.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST---RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~---~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
..+.++.+||+||++.++++.|...|..||+|.+++|+-.... .+.+.|+||.|.+-.||++|+..|++.++.+.++
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 3788899999999999999999999999999999999765332 3345699999999999999999999999999999
Q ss_pred EEeecc
Q 015870 96 RVMYSH 101 (399)
Q Consensus 96 ~v~~~~ 101 (399)
++.|.+
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 998874
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.47 E-value=8.2e-07 Score=58.90 Aligned_cols=70 Identities=29% Similarity=0.444 Sum_probs=48.1
Q ss_pred ceEEEecCCCcCCHHH----HHHhhcCcC-CceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 306 ANLYIKNLDDSIDDEK----LKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~d----l~~~f~~~G-~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..|+|.|||...+... |+.++..+| .|.+|. .+.|.|.|.+.+.|.+|.+.|+|-.+.|++|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 3589999999887764 456666776 677663 35799999999999999999999999999999999
Q ss_pred eeec
Q 015870 381 AQRK 384 (399)
Q Consensus 381 a~~~ 384 (399)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 8533
No 147
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.47 E-value=3.4e-07 Score=73.90 Aligned_cols=154 Identities=21% Similarity=0.318 Sum_probs=121.2
Q ss_pred HHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeecccccccchhhcccCCcceEEee
Q 015870 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVK 208 (399)
Q Consensus 129 ~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~i~ 208 (399)
...|+.+-.+....+..+..+.-.+.+|+.|...+.-..+...-+++.+....++......-.+...........+||.+
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcg 196 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCG 196 (290)
T ss_pred hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecc
Confidence 56667666666677777767777889999988887777766655666666666666555544444444455566789999
Q ss_pred cCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccch
Q 015870 209 NLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282 (399)
Q Consensus 209 ~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~ 282 (399)
.|..+++++.+...|.+|.......++++ ..++++|++||.|.+..++..|+..++|..++.+.|....+..+.
T Consensus 197 dlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 197 DLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred cccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 99999999999999999988777777777 678999999999999999999999999999999998876655444
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.46 E-value=6.9e-08 Score=82.51 Aligned_cols=215 Identities=13% Similarity=0.133 Sum_probs=129.5
Q ss_pred eEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCC----CCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeeccc
Q 015870 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN----GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188 (399)
Q Consensus 113 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~ 188 (399)
.|-|.||.++.|.+++..+|+-.|.|..+.++.+.. ......|||.|.+...+..|.. |.++.+-++.+.|.++.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 588999999999999999999999999998888632 3446689999999999888875 88888878877775543
Q ss_pred ccccchhhcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCcc
Q 015870 189 RKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF 268 (399)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~ 268 (399)
..... +.. +|..++.-..+.-....+| +.|.+... ..+
T Consensus 88 ~~~~p-----------------------~r~--af~~l~~~navprll~pdg-------~Lp~~~~l----------t~~ 125 (479)
T KOG4676|consen 88 DEVIP-----------------------DRF--AFVELADQNAVPRLLPPDG-------VLPGDRPL----------TKI 125 (479)
T ss_pred CCCCc-----------------------cHH--HHHhcCcccccccccCCCC-------ccCCCCcc----------ccc
Confidence 22111 111 2222222111100000011 00000000 000
Q ss_pred CCceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccE
Q 015870 269 DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348 (399)
Q Consensus 269 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~ 348 (399)
+-.+..+-..++....... . ....-.++++|.+|+..+...++.+.|..+|.|...++-...+ ..+
T Consensus 126 nh~p~ailktP~Lp~~~~A-------~----kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~---s~~ 191 (479)
T KOG4676|consen 126 NHSPNAILKTPELPPQAAA-------K----KLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR---SSS 191 (479)
T ss_pred cCCccceecCCCCChHhhh-------h----hhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC---Ccc
Confidence 0000001001111100000 0 0111237899999999999999999999999998877644322 346
Q ss_pred EEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecH
Q 015870 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (399)
Q Consensus 349 afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 385 (399)
|-++|....+..-|+ ..+|+.+.-...++..-+|.+
T Consensus 192 c~~sf~~qts~~hal-r~~gre~k~qhsr~ai~kP~k 227 (479)
T KOG4676|consen 192 CSHSFRKQTSSKHAL-RSHGRERKRQHSRRAIIKPHK 227 (479)
T ss_pred hhhhHhhhhhHHHHH-HhcchhhhhhhhhhhhcCccc
Confidence 779999888888888 568888875555555555443
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.44 E-value=5.9e-07 Score=74.47 Aligned_cols=82 Identities=22% Similarity=0.385 Sum_probs=75.0
Q ss_pred hccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 301 ~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
...+.+.++|+|+.+.++.+++..+|+.+|.|..+.++.+. .+.++|||+|+|.+.+.+..|+. |++..+.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 35577899999999999999999999999999999988887 45689999999999999999997 99999999999999
Q ss_pred Eeee
Q 015870 380 LAQR 383 (399)
Q Consensus 380 ~a~~ 383 (399)
+.+=
T Consensus 176 ~~r~ 179 (231)
T KOG4209|consen 176 LKRT 179 (231)
T ss_pred eeee
Confidence 9773
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.35 E-value=9.6e-07 Score=81.45 Aligned_cols=82 Identities=34% Similarity=0.542 Sum_probs=73.8
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC----CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP----SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 377 (399)
.+.++.|||+||++.++++.|...|-.||+|.+++|+-.. ..+.+.++||.|-+..||.+|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567789999999999999999999999999999876543 355678999999999999999999999999999999
Q ss_pred EEEeee
Q 015870 378 VALAQR 383 (399)
Q Consensus 378 v~~a~~ 383 (399)
+-|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999864
No 151
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.33 E-value=1e-06 Score=73.12 Aligned_cols=83 Identities=24% Similarity=0.372 Sum_probs=76.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
......+.+||+|+...+|.+++..+|+.||.|..+.+..++..+.++|+|||+|.+.+.+..++. |++..|.|+.+.+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 456788999999999999999999999999999999999999888899999999999999999999 8999999999988
Q ss_pred eecc
Q 015870 98 MYSH 101 (399)
Q Consensus 98 ~~~~ 101 (399)
.+..
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 7654
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.32 E-value=2e-06 Score=62.01 Aligned_cols=77 Identities=26% Similarity=0.458 Sum_probs=49.1
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC-----ceecCeeEEEEE
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG-----KMVVSKPLYVAL 380 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~-----~~~~g~~l~v~~ 380 (399)
+.|.|.+++..++.++|++.|++||.|.+|.+.... ..|+|.|.+.++|..|+..+.. ..+.+..+.++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 568999999999999999999999999999887763 3799999999999999998854 466788887777
Q ss_pred eeecHHH
Q 015870 381 AQRKEDR 387 (399)
Q Consensus 381 a~~~~~~ 387 (399)
-.-..+.
T Consensus 77 LeGeeE~ 83 (105)
T PF08777_consen 77 LEGEEEE 83 (105)
T ss_dssp --HHHHH
T ss_pred CCCHHHH
Confidence 4444333
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.26 E-value=1.5e-07 Score=81.35 Aligned_cols=153 Identities=25% Similarity=0.397 Sum_probs=119.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC-CCCCcccEEeecc
Q 015870 24 TSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT-PLNGKPIRVMYSH 101 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~~~g-~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~-~~~g~~i~v~~~~ 101 (399)
..+|++||.+..+.++|...|...- ++..-.++.. |||||.+.+..-|.+|+..+++. .+.|.++.+..+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4689999999999999999997652 1111222222 59999999999999999999876 5789999887765
Q ss_pred CCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCce
Q 015870 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181 (399)
Q Consensus 102 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~ 181 (399)
... ..++.+-++|+|+...++-+..++..||.++.|......+. .-..-|+|.+.+.+..|+.+|++..+.+..
T Consensus 75 ~kk----qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 75 PKK----QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHKLNGPQLENQH 148 (584)
T ss_pred hHH----HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHhhcchHhhhhh
Confidence 432 23456899999999999999999999999998876544211 112336788999999999999999998888
Q ss_pred eeeecccc
Q 015870 182 VYVGHFLR 189 (399)
Q Consensus 182 ~~v~~~~~ 189 (399)
+.+.+..+
T Consensus 149 ~k~~YiPd 156 (584)
T KOG2193|consen 149 LKVGYIPD 156 (584)
T ss_pred hhcccCch
Confidence 88876554
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.18 E-value=2.7e-07 Score=79.77 Aligned_cols=157 Identities=23% Similarity=0.369 Sum_probs=121.9
Q ss_pred ceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCC-ccCCceeeeeccccc
Q 015870 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRK 190 (399)
Q Consensus 112 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~-~~~~~~~~v~~~~~~ 190 (399)
+.+|++||.+.++..++..+|.....-.+-.++. -.||+||.+.+...|.+|++.+++. .+.|+.+.+....++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 3589999999999999999998653222222222 2679999999999999999999875 678888888776655
Q ss_pred ccchhhcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCC
Q 015870 191 QERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD 270 (399)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~ 270 (399)
..+. +.+-|.|+|+...++-+..+...||.+.+|........ ....-+.|...+.+..|++.++|..+..
T Consensus 77 kqrs--------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~kl~g~Q~en 146 (584)
T KOG2193|consen 77 KQRS--------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHKLNGPQLEN 146 (584)
T ss_pred HHHh--------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHhhcchHhhh
Confidence 4433 45779999999999999999999999999876543221 1223466788889999999999999999
Q ss_pred ceeEEeccccchH
Q 015870 271 KEWYVGKAQKKSE 283 (399)
Q Consensus 271 ~~l~v~~~~~~~~ 283 (399)
..+.+.+-+....
T Consensus 147 ~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 147 QHLKVGYIPDEQN 159 (584)
T ss_pred hhhhcccCchhhh
Confidence 9999888765443
No 155
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.13 E-value=5.8e-06 Score=70.67 Aligned_cols=86 Identities=20% Similarity=0.320 Sum_probs=78.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCe--------EEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQV--------VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v--------~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 90 (399)
......+|+|-+||..+++++|.++|.++|.| ..|.+.+++.|+..++-|.|.|.+...|+.|+.-+++..|
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 36677899999999999999999999999866 4588899999999999999999999999999999999999
Q ss_pred CCcccEEeeccCCc
Q 015870 91 NGKPIRVMYSHRDP 104 (399)
Q Consensus 91 ~g~~i~v~~~~~~~ 104 (399)
.+++|+|..+...+
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999998876554
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.07 E-value=1e-05 Score=58.37 Aligned_cols=60 Identities=28% Similarity=0.410 Sum_probs=39.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 015870 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT 88 (399)
Q Consensus 23 ~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~ 88 (399)
++.|.+.|++..++.++|++.|++||+|..|.+..+.. .|+|-|.++++|++|+..+...
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 36789999999999999999999999999887765432 8999999999999999987533
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.00 E-value=1.8e-05 Score=49.14 Aligned_cols=53 Identities=19% Similarity=0.466 Sum_probs=43.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHH
Q 015870 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82 (399)
Q Consensus 23 ~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~ 82 (399)
++.|-|+|.|++.. ++|..+|..||.|..+.+.... .+++|.|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 36789999998766 4566699999999998876222 39999999999999985
No 158
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.91 E-value=1.3e-05 Score=69.06 Aligned_cols=203 Identities=15% Similarity=0.173 Sum_probs=117.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeC---CCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeecc
Q 015870 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL---STRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (399)
Q Consensus 25 ~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~---~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (399)
.|-|.||.+++|.+.++.+|...|.|.++.++... ...-....|||.|-+...+.-|-. |.++.|-++.+.|.+..
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 89999999999999999999999999999886522 122345699999999999998887 67677777777775443
Q ss_pred CCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCce
Q 015870 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181 (399)
Q Consensus 102 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~ 181 (399)
.... .... +|..++.-..+.-...++| |.+.+.... -+.++.+..
T Consensus 88 ~~~~------------------p~r~---af~~l~~~navprll~pdg-------~Lp~~~~lt--~~nh~p~ai----- 132 (479)
T KOG4676|consen 88 DEVI------------------PDRF---AFVELADQNAVPRLLPPDG-------VLPGDRPLT--KINHSPNAI----- 132 (479)
T ss_pred CCCC------------------ccHH---HHHhcCcccccccccCCCC-------ccCCCCccc--cccCCccce-----
Confidence 2211 1111 2332222111111111111 101000000 000111111
Q ss_pred eeeecccccccchhhcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHH
Q 015870 182 VYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261 (399)
Q Consensus 182 ~~v~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~ 261 (399)
...+..++.......... ..++++++|+..+...++.+.|..+|.|....+-.. ...-.|.+.|........|+.
T Consensus 133 -lktP~Lp~~~~A~kleei-rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask---~~s~~c~~sf~~qts~~halr 207 (479)
T KOG4676|consen 133 -LKTPELPPQAAAKKLEEI-RRTREVQSLISAAILPESGESFERKGEVSYAHTASK---SRSSSCSHSFRKQTSSKHALR 207 (479)
T ss_pred -ecCCCCChHhhhhhhHHH-Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc---CCCcchhhhHhhhhhHHHHHH
Confidence 111111111111111111 267889999999999999999999998876654322 223356688877666666664
Q ss_pred HhCCCccC
Q 015870 262 ALNGKKFD 269 (399)
Q Consensus 262 ~l~g~~~~ 269 (399)
++|..+.
T Consensus 208 -~~gre~k 214 (479)
T KOG4676|consen 208 -SHGRERK 214 (479)
T ss_pred -hcchhhh
Confidence 5666654
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.85 E-value=1.3e-05 Score=68.60 Aligned_cols=82 Identities=23% Similarity=0.419 Sum_probs=70.4
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceE--------EEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITS--------CKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~--------v~~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 374 (399)
...+|+|.+||..+++.+|.++|.+.|.|.. +.|.++ +++.+++-|.|+|.+...|++|+..++++.|.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4568999999999999999999999987642 333333 3788999999999999999999999999999999
Q ss_pred eEEEEEeeecH
Q 015870 375 PLYVALAQRKE 385 (399)
Q Consensus 375 ~l~v~~a~~~~ 385 (399)
+|+|.+|..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999987554
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.82 E-value=5.5e-05 Score=63.90 Aligned_cols=84 Identities=20% Similarity=0.422 Sum_probs=66.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHH------HHHHhccCCeEEEEEeeeCCC-CCcccEE--EEEeCCHHHHHHHHHHhCCC
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQL------YDLFNQMGQVVSVRVCRDLST-RRSLGYG--YVNFSNAQEAARALEMLNFT 88 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l------~~~f~~~g~v~~i~~~~~~~~-~~~~g~a--~V~f~~~~~A~~a~~~l~~~ 88 (399)
--...-..+||-+||+.+..+++ .++|.+||.|..|.+-+.-.. ....+.+ ||+|.+.+||.+|+...++.
T Consensus 109 iRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs 188 (480)
T COG5175 109 IRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS 188 (480)
T ss_pred ceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc
Confidence 33556678999999999877772 569999999998888665422 2222334 99999999999999999999
Q ss_pred CCCCcccEEeecc
Q 015870 89 PLNGKPIRVMYSH 101 (399)
Q Consensus 89 ~~~g~~i~v~~~~ 101 (399)
.++|+.|+..+..
T Consensus 189 ~~DGr~lkatYGT 201 (480)
T COG5175 189 LLDGRVLKATYGT 201 (480)
T ss_pred cccCceEeeecCc
Confidence 9999999998754
No 161
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.76 E-value=0.00021 Score=53.79 Aligned_cols=78 Identities=23% Similarity=0.324 Sum_probs=54.3
Q ss_pred hccCCceEEEecCCC------cCCH---HHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee
Q 015870 301 DKFQGANLYIKNLDD------SIDD---EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371 (399)
Q Consensus 301 ~~~~~~~l~v~nl~~------~~~~---~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 371 (399)
.+|+..||.|.=+.+ .+.+ ++|.+.|..||.|.=+|+.-+ .-+|+|.+-+.|.+|+ .++|..+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaal-s~dg~~v 94 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAAL-SLDGIQV 94 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHH-HGCCSEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHH-ccCCcEE
Confidence 356777887776651 2232 367778889999988887665 6999999999999999 7999999
Q ss_pred cCeeEEEEEeeecHH
Q 015870 372 VSKPLYVALAQRKED 386 (399)
Q Consensus 372 ~g~~l~v~~a~~~~~ 386 (399)
+|+.|+|++..|.=.
T Consensus 95 ~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 95 NGRTLKIRLKTPDWL 109 (146)
T ss_dssp TTEEEEEEE------
T ss_pred CCEEEEEEeCCccHH
Confidence 999999999876543
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.69 E-value=9.2e-05 Score=45.92 Aligned_cols=52 Identities=17% Similarity=0.362 Sum_probs=42.1
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~ 363 (399)
+.|.|.+.+.... +++..+|..||.|..+.+... ..+++|.|++..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 4688899986665 456668889999999988733 458999999999999985
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00014 Score=65.84 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=63.0
Q ss_pred CceEEEecCCCcC--CH----HHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec-CeeEE
Q 015870 305 GANLYIKNLDDSI--DD----EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLY 377 (399)
Q Consensus 305 ~~~l~v~nl~~~~--~~----~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~l~ 377 (399)
...|+|.|+|--- .. .-|..+|+++|.+..+.++.++.|..+|++|++|.+..+|..|++.|||..+. .+...
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 4578899998522 22 34567799999999999999988889999999999999999999999999994 55666
Q ss_pred EEE
Q 015870 378 VAL 380 (399)
Q Consensus 378 v~~ 380 (399)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 654
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.67 E-value=0.00014 Score=51.52 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=50.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEe-e--------eCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVC-R--------DLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~-~--------~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
...+.|.|-|.|+. ....|.++|++||.|++..-. + ....+ .++..|.|.++.+|++|+.. ||..+.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~--~NWi~I~Y~~~~~A~rAL~~-NG~i~~ 79 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSG--GNWIHITYDNPLSAQRALQK-NGTIFS 79 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CC--TTEEEEEESSHHHHHHHHTT-TTEEET
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCC--CCEEEEECCCHHHHHHHHHh-CCeEEc
Confidence 34667999999998 566789999999999877400 0 00112 24999999999999999995 999998
Q ss_pred CcccE
Q 015870 92 GKPIR 96 (399)
Q Consensus 92 g~~i~ 96 (399)
|..+-
T Consensus 80 g~~mv 84 (100)
T PF05172_consen 80 GSLMV 84 (100)
T ss_dssp TCEEE
T ss_pred CcEEE
Confidence 87654
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.67 E-value=0.00013 Score=61.72 Aligned_cols=76 Identities=20% Similarity=0.439 Sum_probs=60.8
Q ss_pred eEEEecCCCcCCHHHH------HHhhcCcCCceEEEEeeCC--CCCcccE--EEEEeCCHHHHHHHHHHhcCceecCeeE
Q 015870 307 NLYIKNLDDSIDDEKL------KQLFSPFGSITSCKVMRDP--SGISRGS--GFVAFSTPEEASRALLEMNGKMVVSKPL 376 (399)
Q Consensus 307 ~l~v~nl~~~~~~~dl------~~~f~~~G~v~~v~~~~~~--~~~~~g~--afV~f~~~~~A~~A~~~l~~~~~~g~~l 376 (399)
-+||.+||+.+-.++. .++|-+||.|..|.+-+.. .....+. .+|+|.+.+||.+++...+|..++||.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 4899999988766652 5679999999998876653 1111222 4999999999999999999999999999
Q ss_pred EEEEee
Q 015870 377 YVALAQ 382 (399)
Q Consensus 377 ~v~~a~ 382 (399)
+..|.-
T Consensus 196 katYGT 201 (480)
T COG5175 196 KATYGT 201 (480)
T ss_pred eeecCc
Confidence 999865
No 166
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.58 E-value=2.9e-05 Score=63.32 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=53.7
Q ss_pred HHHHHhhc-CcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 320 EKLKQLFS-PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 320 ~dl~~~f~-~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
+|+...|+ +||.|+.+.+..+-....+|-+.|.|...++|.+|+..|||.++.|++|...+.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555665 8999999987776555567889999999999999999999999999999988753
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.55 E-value=0.00041 Score=49.19 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=52.9
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEE-EeeC-------CCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK-VMRD-------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~-~~~~-------~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 375 (399)
..+.|.|-+.|+. ....|.+.|++||.|.+.. +.+. +.....++..|+|++..+|.+|| .-||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 3456888899887 5567889999999998764 1111 11112468999999999999999 67999998875
Q ss_pred E-EEEEeee
Q 015870 376 L-YVALAQR 383 (399)
Q Consensus 376 l-~v~~a~~ 383 (399)
| -|.+.++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 5 4777654
No 168
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.43 E-value=0.00024 Score=60.45 Aligned_cols=80 Identities=20% Similarity=0.354 Sum_probs=67.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g--~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
..+-..-++||+||-|.+|.+||.+.+...| .+.+++++..+.+|.++|||+|...+....++.++.|-...|.|.--
T Consensus 75 s~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 75 SSEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred cccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 3344556789999999999999999988776 67889999998899999999999999999999999887777777554
Q ss_pred EE
Q 015870 96 RV 97 (399)
Q Consensus 96 ~v 97 (399)
.|
T Consensus 155 ~V 156 (498)
T KOG4849|consen 155 TV 156 (498)
T ss_pred ee
Confidence 44
No 169
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.38 E-value=0.00027 Score=60.13 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=65.4
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcC--CceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCe-eEEEEEe
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-PLYVALA 381 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G--~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~-~l~v~~a 381 (399)
.++||+||-|.+|++||.+.+...| .+.++++.-+. +|.++|||+|...+..+..+.++.|-.+.++|. +..+.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 5789999999999999999988776 45566665554 899999999999999999999999999999987 5666665
Q ss_pred e
Q 015870 382 Q 382 (399)
Q Consensus 382 ~ 382 (399)
|
T Consensus 161 K 161 (498)
T KOG4849|consen 161 K 161 (498)
T ss_pred h
Confidence 5
No 170
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.38 E-value=0.00021 Score=58.25 Aligned_cols=74 Identities=26% Similarity=0.412 Sum_probs=61.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCC--------CCc----ccEEEEEeCCHHHHHHHHHHhCCCC
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST--------RRS----LGYGYVNFSNAQEAARALEMLNFTP 89 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~--------~~~----~g~a~V~f~~~~~A~~a~~~l~~~~ 89 (399)
.+-.||+++||+.....-|+++|++||.|-.|.+-....+ |.+ .--+.|+|.+...|+++...||+.+
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5678999999999999999999999999988877544333 222 2346799999999999999999999
Q ss_pred CCCccc
Q 015870 90 LNGKPI 95 (399)
Q Consensus 90 ~~g~~i 95 (399)
|+|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998654
No 171
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.36 E-value=0.00072 Score=55.32 Aligned_cols=89 Identities=24% Similarity=0.361 Sum_probs=79.5
Q ss_pred HHHHHHHHHhCCCCCCCcccEEeeccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEE
Q 015870 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYG 155 (399)
Q Consensus 76 ~~A~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a 155 (399)
.-|..|...|++....|+.+.|.++.. ..|+|.||+..++.+.+.+.|+.||.+....+..+..+...+-+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~---------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg 75 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH---------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREG 75 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc---------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccc
Confidence 346777788899999999999999864 24999999999999999999999999999988888888888999
Q ss_pred EEEecCHHHHHHHHHHhc
Q 015870 156 FVQFDNEESAQKAIEKLN 173 (399)
Q Consensus 156 ~v~f~~~~~a~~a~~~l~ 173 (399)
+|.|...-.+..|+..+.
T Consensus 76 ~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 76 IVEFAKKPNARKAARRCR 93 (275)
T ss_pred hhhhhcchhHHHHHHHhc
Confidence 999999999999998773
No 172
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.34 E-value=0.00071 Score=55.36 Aligned_cols=89 Identities=27% Similarity=0.334 Sum_probs=79.4
Q ss_pred HHHHHHHHHhCCCccCCceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCce
Q 015870 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333 (399)
Q Consensus 254 ~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~ 333 (399)
.-|..|...|.+....|+.+.+.++.. ..|+|.||+..++.+.+..-|+.||.|.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-------------------------a~l~V~nl~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-------------------------AELYVVNLMQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-------------------------ceEEEEecchhhhhHHHHHhhhhcCccc
Confidence 346677778999999999999999862 5799999999999999999999999999
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 015870 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (399)
Q Consensus 334 ~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 367 (399)
...+..+..+++.+-.+|.|...-.|.+|.....
T Consensus 60 ~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 60 RAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred hheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 8888888889999999999999999999998774
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.27 E-value=0.00021 Score=62.62 Aligned_cols=67 Identities=24% Similarity=0.411 Sum_probs=57.2
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeC---C-C--CC--------cccEEEEEeCCHHHHHHHHHHhcC
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD---P-S--GI--------SRGSGFVAFSTPEEASRALLEMNG 368 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~---~-~--~~--------~~g~afV~f~~~~~A~~A~~~l~~ 368 (399)
.++++|.+.|||.+-.-+.|.++|..+|.|..|+|+.. + + +. .+-+|+|+|+..+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36789999999999888999999999999999999887 2 1 22 245799999999999999988854
Q ss_pred c
Q 015870 369 K 369 (399)
Q Consensus 369 ~ 369 (399)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.24 E-value=0.00033 Score=61.46 Aligned_cols=70 Identities=19% Similarity=0.395 Sum_probs=58.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeee------CCCCC-------cccEEEEEeCCHHHHHHHHHHh
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD------LSTRR-------SLGYGYVNFSNAQEAARALEML 85 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~------~~~~~-------~~g~a~V~f~~~~~A~~a~~~l 85 (399)
.+.++++|.+-|||.+-..+.|.++|..+|.|.+|.|... .+... .+-+|+|+|...+.|.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3568999999999999999999999999999999999765 11111 2458999999999999999987
Q ss_pred CCC
Q 015870 86 NFT 88 (399)
Q Consensus 86 ~~~ 88 (399)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 543
No 175
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.20 E-value=0.0029 Score=46.90 Aligned_cols=78 Identities=18% Similarity=0.300 Sum_probs=61.2
Q ss_pred CCCCCCccEEEEcCCCCCCCH-HH---HHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 17 NANQFGTTSLYVGDLEANVTD-SQ---LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~-~~---l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
...+++..||.|+=|+.+... +| |...++.||+|.+|...-. ..|.|.|.+..+|-+|+.+++. ...|
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pg 151 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPG 151 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCC
Confidence 445889999999999888643 33 5567789999999988532 2799999999999999998774 5667
Q ss_pred cccEEeeccC
Q 015870 93 KPIRVMYSHR 102 (399)
Q Consensus 93 ~~i~v~~~~~ 102 (399)
..+...|.++
T Consensus 152 tm~qCsWqqr 161 (166)
T PF15023_consen 152 TMFQCSWQQR 161 (166)
T ss_pred ceEEeecccc
Confidence 7777776553
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.19 E-value=0.00099 Score=55.45 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=61.3
Q ss_pred hhccCCceEEEecCCC--cCCH---HHHHHhhcCcCCceEEEEeeCCC---CCcccEEEEEeCCHHHHHHHHHHhcCcee
Q 015870 300 ADKFQGANLYIKNLDD--SIDD---EKLKQLFSPFGSITSCKVMRDPS---GISRGSGFVAFSTPEEASRALLEMNGKMV 371 (399)
Q Consensus 300 ~~~~~~~~l~v~nl~~--~~~~---~dl~~~f~~~G~v~~v~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 371 (399)
....+++.|.+.|+-. .+.+ +++++.+.+||.|..|.|.-.++ .... -.||+|...++|.+|+-.|||+.|
T Consensus 276 Il~~ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deav-RiFveF~r~e~aiKA~VdlnGRyF 354 (378)
T KOG1996|consen 276 ILKCPTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAV-RIFVEFERVESAIKAVVDLNGRYF 354 (378)
T ss_pred HHhcchHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhh-eeeeeeccHHHHHHHHHhcCCcee
Confidence 3445556666666632 3333 57788899999999887755532 1111 389999999999999999999999
Q ss_pred cCeeEEEEEee
Q 015870 372 VSKPLYVALAQ 382 (399)
Q Consensus 372 ~g~~l~v~~a~ 382 (399)
+||.+..-|..
T Consensus 355 GGr~v~A~Fyn 365 (378)
T KOG1996|consen 355 GGRVVSACFYN 365 (378)
T ss_pred cceeeeheecc
Confidence 99999988765
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0021 Score=58.55 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=61.3
Q ss_pred CCccEEEEcCCCCCCC--HHH----HHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC-Cc
Q 015870 21 FGTTSLYVGDLEANVT--DSQ----LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN-GK 93 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~--~~~----l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~-g~ 93 (399)
.--..|.|.|+|-==. .+. |..+|+++|++++..++-+-. |..+|++|++|.+..+|+.|+..|||..++ ++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 4457899999997321 222 456799999999998887754 559999999999999999999999999876 55
Q ss_pred ccEEee
Q 015870 94 PIRVMY 99 (399)
Q Consensus 94 ~i~v~~ 99 (399)
+..+..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 666544
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.06 E-value=0.0006 Score=62.37 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=68.4
Q ss_pred hccCCceEEEecCCCcCCHHHHHHhhcC-cCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee---cCeeE
Q 015870 301 DKFQGANLYIKNLDDSIDDEKLKQLFSP-FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV---VSKPL 376 (399)
Q Consensus 301 ~~~~~~~l~v~nl~~~~~~~dl~~~f~~-~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~~l 376 (399)
....+..|+|.||---+|.-.|+.++.+ .|.|....|-+- +..|||.|.+.++|.+...+|||..+ +++.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-----hcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 3456788999999999999999999985 556766643333 44799999999999999999999988 78999
Q ss_pred EEEEeeecHHHH
Q 015870 377 YVALAQRKEDRR 388 (399)
Q Consensus 377 ~v~~a~~~~~~~ 388 (399)
.+.|+......+
T Consensus 515 ~adf~~~deld~ 526 (718)
T KOG2416|consen 515 IADFVRADELDK 526 (718)
T ss_pred EeeecchhHHHH
Confidence 999988766553
No 179
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.04 E-value=0.00034 Score=57.13 Aligned_cols=72 Identities=19% Similarity=0.363 Sum_probs=60.4
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCC---------CCcc----cEEEEEeCCHHHHHHHHHHhcCce
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS---------GISR----GSGFVAFSTPEEASRALLEMNGKM 370 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~---------~~~~----g~afV~f~~~~~A~~A~~~l~~~~ 370 (399)
.+-.||+++||+.+.-..|+.+|+.||.|-.|.+-+... |..+ --++|+|.+-..|.+....|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 345799999999999999999999999999988766532 2222 247899999999999999999999
Q ss_pred ecCee
Q 015870 371 VVSKP 375 (399)
Q Consensus 371 ~~g~~ 375 (399)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 180
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.02 E-value=0.00048 Score=61.24 Aligned_cols=81 Identities=20% Similarity=0.243 Sum_probs=69.3
Q ss_pred CCCCCCccEEEEcCCCCCC-CHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 17 NANQFGTTSLYVGDLEANV-TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~-~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
+......+.|-+.-.|... +..+|..+|.+||.|.+|.+-... -.|.|+|.+..+|-+|.. .++..|+|+.|
T Consensus 366 g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~i 438 (526)
T KOG2135|consen 366 GHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFI 438 (526)
T ss_pred cchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCcee
Confidence 4557888899999999997 568899999999999999886542 279999999999988887 58999999999
Q ss_pred EEeeccCCc
Q 015870 96 RVMYSHRDP 104 (399)
Q Consensus 96 ~v~~~~~~~ 104 (399)
++.|.+..+
T Consensus 439 Kl~whnps~ 447 (526)
T KOG2135|consen 439 KLFWHNPSP 447 (526)
T ss_pred EEEEecCCc
Confidence 999987654
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.95 E-value=0.0025 Score=48.10 Aligned_cols=75 Identities=28% Similarity=0.386 Sum_probs=51.9
Q ss_pred CCCccEEEEcCCCC------CCCH---HHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 015870 20 QFGTTSLYVGDLEA------NVTD---SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (399)
Q Consensus 20 ~~~~~~l~v~nLP~------~~~~---~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 90 (399)
.++-.||.|+=+.+ ...+ .+|.+.|..||.+.-++++.+ .-+|+|.+.++|-+|+. +++..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 34455666665551 1222 357788999999887777654 67999999999999999 699999
Q ss_pred CCcccEEeeccCC
Q 015870 91 NGKPIRVMYSHRD 103 (399)
Q Consensus 91 ~g~~i~v~~~~~~ 103 (399)
.|+.++|..-.++
T Consensus 95 ~g~~l~i~LKtpd 107 (146)
T PF08952_consen 95 NGRTLKIRLKTPD 107 (146)
T ss_dssp TTEEEEEEE----
T ss_pred CCEEEEEEeCCcc
Confidence 9999999876543
No 182
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.95 E-value=0.00047 Score=56.50 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=60.5
Q ss_pred HHHHHHhc-ccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHH
Q 015870 217 EDLQKSFG-EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288 (399)
Q Consensus 217 ~~l~~~f~-~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~ 288 (399)
+++...++ +||.|+++.+-.+...+..|.+||.|..+++|.+|+..|++..+.|++|+..+.+........-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C 155 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAIC 155 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhhh
Confidence 55666666 8999999877766666788999999999999999999999999999999999887766555443
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.95 E-value=0.0029 Score=52.81 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=53.0
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCcc-cEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccC
Q 015870 38 SQLYDLFNQMGQVVSVRVCRDLSTRRSL-GYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (399)
Q Consensus 38 ~~l~~~f~~~g~v~~i~~~~~~~~~~~~-g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (399)
+++.+-+.+||.|..|.|+.....-... --.||+|...++|.+|+-.|||.+|+|+.++..+.+-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 5678889999999999988764332221 1479999999999999999999999999999877653
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.88 E-value=0.0054 Score=41.10 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=43.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~ 86 (399)
+.-.+..+|+ .|..+...||.++|+.||.|. |.-+.+. .|||...+.+.|..++..+.
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 3344556666 999999999999999999864 5555552 79999999999999999875
No 185
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.86 E-value=0.0069 Score=40.62 Aligned_cols=58 Identities=24% Similarity=0.419 Sum_probs=43.0
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 368 (399)
+...||--..|..+-..||..+|+.||.| .|.++.+ ..|||.....+.|..|+..+..
T Consensus 7 ~RdHVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 7 SRDHVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWIND------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp SGCCEEEEE--TT--HHHHHHHCCCCCCE-EEEEECT------TEEEEEECCCHHHHHHHHHHTT
T ss_pred CcceEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcC------CcEEEEeecHHHHHHHHHHhcc
Confidence 33445444499999999999999999987 5666665 3699999999999999988853
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.83 E-value=0.0074 Score=38.35 Aligned_cols=55 Identities=25% Similarity=0.405 Sum_probs=45.4
Q ss_pred CceEEEecCCCcCCHHHHHHhhcCc---CCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFSPF---GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~~~---G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 366 (399)
..+|+|.|+. +++-+||+.+|..| .....|.++.+. .|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 3579999985 68889999999988 246688888873 5999999999999999764
No 187
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.75 E-value=0.023 Score=41.27 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=56.4
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g-~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
....+.+..+.+...|..++-++|..+.+.+- .|..+.++++.. .++-.+++.|.+.++|......+||..|..
T Consensus 7 ~~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 7 LPDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34455566677777777677778877766663 677888888743 355589999999999999999999998754
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.70 E-value=0.013 Score=37.23 Aligned_cols=54 Identities=20% Similarity=0.342 Sum_probs=44.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcc----CCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015870 23 TTSLYVGDLEANVTDSQLYDLFNQM----GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (399)
Q Consensus 23 ~~~l~v~nLP~~~~~~~l~~~f~~~----g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l 85 (399)
...|.|+|+.. .+.++|+.+|..| ++ ..|.=+.|. .|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 45799999955 8899999999999 54 567777774 5899999999999999754
No 189
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.51 E-value=0.011 Score=44.02 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=55.8
Q ss_pred hccCCceEEEecCCCcC-CHHHHHHh---hcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 015870 301 DKFQGANLYIKNLDDSI-DDEKLKQL---FSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376 (399)
Q Consensus 301 ~~~~~~~l~v~nl~~~~-~~~dl~~~---f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l 376 (399)
..++..+|.|.=|..++ ..+|++.+ ++.||+|.+|...-. ..|.|.|++..+|=.|+.+++. ...|.-+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR------QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC------ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 35678899998777665 23555554 578999999986543 3699999999999999998877 5566667
Q ss_pred EEEEe
Q 015870 377 YVALA 381 (399)
Q Consensus 377 ~v~~a 381 (399)
..+|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 66653
No 190
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.41 E-value=0.0035 Score=57.56 Aligned_cols=84 Identities=23% Similarity=0.201 Sum_probs=68.6
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh-ccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFN-QMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~-~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 90 (399)
-..++|.-.+.++.|+|+||=.-.|.-.|++++. ..|.|.+.||-+-++ .|||.|.+.++|.....+||+..+
T Consensus 433 ~RvpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS------hCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 433 ERVPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS------HCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred ccCCCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhc------ceeEecccHHHHHHHHHHHhcccc
Confidence 3566777889999999999999999999999998 566888887755544 899999999999999999998765
Q ss_pred ---CCcccEEeecc
Q 015870 91 ---NGKPIRVMYSH 101 (399)
Q Consensus 91 ---~g~~i~v~~~~ 101 (399)
+.+.|.+.|..
T Consensus 507 P~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 507 PPSNPKHLIADFVR 520 (718)
T ss_pred CCCCCceeEeeecc
Confidence 24556665553
No 191
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.39 E-value=0.0034 Score=50.17 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=44.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhc-cCCeEEEEEee---eC-CCCC-cccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQ-MGQVVSVRVCR---DL-STRR-SLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~-~g~v~~i~~~~---~~-~~~~-~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
+.....|.||+||+++|++++.+.+.. ++.-.....+. +. .... ...-|||.|.+.+++......++|..|.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 345679999999999999998886665 55442111211 11 1111 23479999999999999999999877654
No 192
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.35 E-value=0.013 Score=53.53 Aligned_cols=71 Identities=17% Similarity=0.352 Sum_probs=57.1
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcC--cCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc--CceecCeeEEEE
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSP--FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN--GKMVVSKPLYVA 379 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~--~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~l~v~ 379 (399)
..+.|+|+-||..+..++++.+|.. .-.+++|.+-.+. -.+|+|++..||+.|.+.|. -..|.|++|...
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 3567899999999999999999964 5578888876653 38999999999999999884 356677776554
Q ss_pred E
Q 015870 380 L 380 (399)
Q Consensus 380 ~ 380 (399)
+
T Consensus 248 I 248 (684)
T KOG2591|consen 248 I 248 (684)
T ss_pred h
Confidence 4
No 193
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.09 E-value=0.0031 Score=56.27 Aligned_cols=72 Identities=19% Similarity=0.239 Sum_probs=59.2
Q ss_pred ceEEEecCCCcC-CHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeee
Q 015870 306 ANLYIKNLDDSI-DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (399)
Q Consensus 306 ~~l~v~nl~~~~-~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 383 (399)
+.|-+.-.|... +..+|..+|.+||.|..|.+... .-.|.|+|.+..+|-.|. +.++..|++|.|+|.|-.+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 445555566655 55899999999999999987554 236999999999998888 6799999999999999776
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.93 E-value=0.027 Score=45.20 Aligned_cols=62 Identities=26% Similarity=0.317 Sum_probs=46.5
Q ss_pred CHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc--CceecCeeEEEEEeeec
Q 015870 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN--GKMVVSKPLYVALAQRK 384 (399)
Q Consensus 318 ~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~l~v~~a~~~ 384 (399)
..+.|+++|..|+.+.....++. -+-..|.|.+.++|.+|...|+ +..+.|..+++-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999998888776665 3459999999999999999999 99999999999998543
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.45 E-value=0.043 Score=50.34 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=57.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhc--cCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CCCCCccc
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQ--MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF--TPLNGKPI 95 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~--~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~--~~~~g~~i 95 (399)
....|.|+||-||..+.+++|+.+|.. +-++.++.+-... -=||+|.+..||+.|...|.. +.|.|+.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 566788999999999999999999974 4578888775432 249999999999999999863 35777776
Q ss_pred EEe
Q 015870 96 RVM 98 (399)
Q Consensus 96 ~v~ 98 (399)
...
T Consensus 245 mAR 247 (684)
T KOG2591|consen 245 MAR 247 (684)
T ss_pred hhh
Confidence 543
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.45 E-value=0.0052 Score=52.74 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=61.0
Q ss_pred eEEEecCCCcCCHHHH---HHhhcCcCCceEEEEeeCCC----CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 307 NLYIKNLDDSIDDEKL---KQLFSPFGSITSCKVMRDPS----GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 307 ~l~v~nl~~~~~~~dl---~~~f~~~G~v~~v~~~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
-++|-+|+...-++++ ...|.+||.|.++.+..+.. ......+.|+|...++|..+|...+|..++|+.|+..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 4678888877655544 34588999999998776541 1123458999999999999999999999999998888
Q ss_pred EeeecH
Q 015870 380 LAQRKE 385 (399)
Q Consensus 380 ~a~~~~ 385 (399)
++-.+-
T Consensus 159 ~gttky 164 (327)
T KOG2068|consen 159 LGTTKY 164 (327)
T ss_pred hCCCcc
Confidence 876553
No 197
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.36 E-value=0.087 Score=44.57 Aligned_cols=65 Identities=25% Similarity=0.275 Sum_probs=50.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 23 ~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
..=|-|-+.|+.. -..|..+|++||.|++.... .+| ++-+|.|.+..+|++|+.. ++++|+|..+
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~---~ng---NwMhirYssr~~A~KALsk-ng~ii~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP---SNG---NWMHIRYSSRTHAQKALSK-NGTIIDGDVM 261 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC---CCC---ceEEEEecchhHHHHhhhh-cCeeeccceE
Confidence 3457778888853 35688899999998766443 223 4999999999999999995 9999988653
No 198
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.32 E-value=0.011 Score=56.92 Aligned_cols=75 Identities=29% Similarity=0.358 Sum_probs=63.2
Q ss_pred EEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee--cCeeEEEEEeeecHH
Q 015870 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYVALAQRKED 386 (399)
Q Consensus 309 ~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~~a~~~~~ 386 (399)
.+.|.+-..+-..|..+|++||.|.+.+.+++. ..|.|+|.+.+.|..|+++|+|..+ -|-+.+|.+|+.-.+
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 344555567778999999999999999988874 4799999999999999999999877 688999999997665
Q ss_pred HH
Q 015870 387 RR 388 (399)
Q Consensus 387 ~~ 388 (399)
..
T Consensus 377 ~e 378 (1007)
T KOG4574|consen 377 YE 378 (1007)
T ss_pred cc
Confidence 44
No 199
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.28 E-value=0.087 Score=47.21 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=61.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g-~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
+.+++.|.|-.+|...+.-||..|+..+- .|.+|.++++. -+++-+++|.|.+.++|..+...+||..|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 44489999999999999999999998764 78999999964 3455589999999999999999999988764
No 200
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.99 E-value=0.055 Score=43.44 Aligned_cols=59 Identities=27% Similarity=0.384 Sum_probs=45.9
Q ss_pred HHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCCCCCcccEEeecc
Q 015870 37 DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN--FTPLNGKPIRVMYSH 101 (399)
Q Consensus 37 ~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~--~~~~~g~~i~v~~~~ 101 (399)
.+.|+++|..++++..+..++.-+ -..|.|.+.++|.+|...|+ +..+.|..+++.++.
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred HHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 467999999999988888876543 68999999999999999999 888999999998874
No 201
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.98 E-value=0.91 Score=38.64 Aligned_cols=181 Identities=14% Similarity=0.210 Sum_probs=110.5
Q ss_pred CcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECC--------CCCeeeEEEEEeCCHHHHHHHHH----HhCC--C
Q 015870 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG--------DGKSKCFGFVNFENSDDAARAVE----ALNG--K 266 (399)
Q Consensus 201 ~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~--------~~~~~g~~~v~f~~~~~a~~a~~----~l~g--~ 266 (399)
.++.|.+.|+..+++-..+...|.+||+|+.+.++... .........+.|-+.+.+-.-.. .+.. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 44668899999999999999999999999999999875 12233457788888766544322 2222 2
Q ss_pred ccCCceeEEeccccchH------H-HHHHHHHHHHh-hHHhhhccCCceEEEecCCCcCCHHHH-HHhh---cCcC----
Q 015870 267 KFDDKEWYVGKAQKKSE------R-ELELKHQFEQN-MKEAADKFQGANLYIKNLDDSIDDEKL-KQLF---SPFG---- 330 (399)
Q Consensus 267 ~~~~~~l~v~~~~~~~~------~-~~~~~~~~~~~-~~~~~~~~~~~~l~v~nl~~~~~~~dl-~~~f---~~~G---- 330 (399)
.+....+.+++..-.-. . +...+...... ......-..+|.|.|. +...+..+|+ .+.+ ..-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCceE
Confidence 35666777666542100 0 00000001111 1122334567888886 4455544443 2222 1112
Q ss_pred CceEEEEeeCC---CCCcccEEEEEeCCHHHHHHHHHHhc--Cceec-CeeEEEEEee
Q 015870 331 SITSCKVMRDP---SGISRGSGFVAFSTPEEASRALLEMN--GKMVV-SKPLYVALAQ 382 (399)
Q Consensus 331 ~v~~v~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~-g~~l~v~~a~ 382 (399)
.+++|.++... +..+..||.++|-+...|...++.+. +...+ .+..-|+.+.
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 57788877653 45578899999999999999999886 33332 4566666554
No 202
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.90 E-value=0.13 Score=34.57 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=36.7
Q ss_pred cCCHHHHHHhhcCcCC-----ceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 316 SIDDEKLKQLFSPFGS-----ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 316 ~~~~~dl~~~f~~~G~-----v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
.++..+|..++...+. |-.+++... |+||+-.. +.|..++..|++..+.|++++|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5788899999876643 446776665 89999988 6888899999999999999999875
No 203
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.84 E-value=0.078 Score=42.44 Aligned_cols=79 Identities=18% Similarity=0.290 Sum_probs=50.7
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcC-cCCc---eEEEEeeCC--CCC-cccEEEEEeCCHHHHHHHHHHhcCceec---C
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSP-FGSI---TSCKVMRDP--SGI-SRGSGFVAFSTPEEASRALLEMNGKMVV---S 373 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~-~G~v---~~v~~~~~~--~~~-~~g~afV~f~~~~~A~~A~~~l~~~~~~---g 373 (399)
...+|.|++||+..|++++...++. ++.- .++.-.... .+. ...-|+|.|.+.+++..-...++|..|. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999999998877 6554 233311221 111 2335999999999999999999998883 2
Q ss_pred --eeEEEEEee
Q 015870 374 --KPLYVALAQ 382 (399)
Q Consensus 374 --~~l~v~~a~ 382 (399)
-+-.|.+|=
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 255566654
No 204
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.84 E-value=0.31 Score=35.46 Aligned_cols=65 Identities=22% Similarity=0.212 Sum_probs=49.1
Q ss_pred eEEEecCCCcCCHHHHHHhhcCcC-CceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 015870 307 NLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (399)
Q Consensus 307 ~l~v~nl~~~~~~~dl~~~f~~~G-~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 372 (399)
.+.+-..|+-++.++|..+.+.+- .|..++++++... ++..+.+.|.+.++|..-...+||+.|.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344545555667777776667664 5677888887433 5667999999999999999999999885
No 205
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.57 E-value=1.5 Score=37.47 Aligned_cols=158 Identities=11% Similarity=0.175 Sum_probs=102.4
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeC-------CCCCcccEEEEEeCCHHHHHHHHHHh---
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL-------STRRSLGYGYVNFSNAQEAARALEML--- 85 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~-------~~~~~~g~a~V~f~~~~~A~~a~~~l--- 85 (399)
.+.+.--+|.|+..||..+++--.+...|.+||+|.+|.++.+. ..........+.|-+.+.+-.....+
T Consensus 8 kGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQr 87 (309)
T PF10567_consen 8 KGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQR 87 (309)
T ss_pred CCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHH
Confidence 35567788999999999999998899999999999999999875 01223357889999998887665432
Q ss_pred -C--CCCCCCcccEEeeccC-----C--c-----------------ccccCCCceEEEcCCCcccCHHHHHHH---hccc
Q 015870 86 -N--FTPLNGKPIRVMYSHR-----D--P-----------------SLRKSGAGNIFIKNLDKAIDHKALHDT---FSAF 135 (399)
Q Consensus 86 -~--~~~~~g~~i~v~~~~~-----~--~-----------------~~~~~~~~~l~v~nlp~~~t~~~l~~~---f~~~ 135 (399)
. .+.+....+.+.+..- . . -......+.|.|.=-.+-.+++-+... +..-
T Consensus 88 LsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 88 LSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred HHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccC
Confidence 1 1235566666666431 0 0 011223445555432222222222222 2222
Q ss_pred C----CeEEEEEeeC---CCCCceeEEEEEecCHHHHHHHHHHhc
Q 015870 136 G----NILSCKVATD---LNGQSKGYGFVQFDNEESAQKAIEKLN 173 (399)
Q Consensus 136 g----~v~~~~~~~~---~~~~~~g~a~v~f~~~~~a~~a~~~l~ 173 (399)
+ -++.+.++.. ....+..||.+.|-+..+|...+..+.
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 3 2466666655 235578899999999999999998875
No 206
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.46 E-value=0.023 Score=48.91 Aligned_cols=81 Identities=16% Similarity=0.314 Sum_probs=63.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHH---HHhccCCeEEEEEeeeCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYD---LFNQMGQVVSVRVCRDLS----TRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~---~f~~~g~v~~i~~~~~~~----~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
+...+.+||-+||.....+++.+ +|.+||.|..|.+.++.+ .+. .--++|+|...++|..|+...++....|
T Consensus 74 vVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~-~~s~yITy~~~eda~rci~~v~g~~~dg 152 (327)
T KOG2068|consen 74 VVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGG-TCSVYITYEEEEDADRCIDDVDGFVDDG 152 (327)
T ss_pred hhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCC-CCcccccccchHhhhhHHHHhhhHHhhh
Confidence 44567788999999876655533 799999999998877652 122 2248999999999999999999999999
Q ss_pred cccEEeecc
Q 015870 93 KPIRVMYSH 101 (399)
Q Consensus 93 ~~i~v~~~~ 101 (399)
+.++..+..
T Consensus 153 ~~lka~~gt 161 (327)
T KOG2068|consen 153 RALKASLGT 161 (327)
T ss_pred hhhHHhhCC
Confidence 998776654
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.19 E-value=0.15 Score=45.72 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=57.8
Q ss_pred CceEEEecCCCcCCHHHHHHhhcCcC-CceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~~~G-~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 372 (399)
++.|+|-.+|..++..||..++..+- .|.+++++++..+. +-.++|.|.+.++|..-...+||..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn-rymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN-RYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc-eEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 67899999999999999999987664 68899999964333 557999999999999999999999885
No 208
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.78 E-value=0.21 Score=46.30 Aligned_cols=78 Identities=24% Similarity=0.223 Sum_probs=62.3
Q ss_pred ccCCceEEEecCCCc-CCHHHHHHhhcCc----CCceEEEEeeCCCCC--------------------------------
Q 015870 302 KFQGANLYIKNLDDS-IDDEKLKQLFSPF----GSITSCKVMRDPSGI-------------------------------- 344 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~-~~~~dl~~~f~~~----G~v~~v~~~~~~~~~-------------------------------- 344 (399)
+..++.|-|.|+.|. +..+||.-+|+.| |.|.+|.|.+..-|+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 556788999999984 7889999998765 589999988764322
Q ss_pred ----------------cccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 345 ----------------SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 345 ----------------~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
...||.|+|.+.+.|.+.....+|..|......+.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 12489999999999999999999999976544443
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.75 E-value=0.41 Score=31.06 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=42.0
Q ss_pred CCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 35 VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 35 ~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
++-++++..+..|+. ..|..++ +| =||.|.+..+|++|....++..+.+..+.+
T Consensus 12 ~~v~d~K~~Lr~y~~---~~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 12 VTVEDFKKRLRKYRW---DRIRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred ccHHHHHHHHhcCCc---ceEEecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 678999999999975 3344443 33 379999999999999999988877766544
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.17 E-value=0.074 Score=51.43 Aligned_cols=72 Identities=32% Similarity=0.439 Sum_probs=59.7
Q ss_pred EEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC--CCcccEEeeccCCc
Q 015870 27 YVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL--NGKPIRVMYSHRDP 104 (399)
Q Consensus 27 ~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~--~g~~i~v~~~~~~~ 104 (399)
.+.|.+-+.+-..|..+|.+||.|.+++..++-. +|.|+|.+.+.|..|+..++|..+ .|-+.+|.+++..+
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 3445555667777899999999999999987753 899999999999999999999864 48889999987544
No 211
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.78 E-value=0.14 Score=35.31 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=46.2
Q ss_pred EEEEeCCHHHHHHHHHHhC-CCCCCCcccEEeeccCCc-------ccccCCCceEEEcCCCcccCHHHHHHHhc
Q 015870 68 GYVNFSNAQEAARALEMLN-FTPLNGKPIRVMYSHRDP-------SLRKSGAGNIFIKNLDKAIDHKALHDTFS 133 (399)
Q Consensus 68 a~V~f~~~~~A~~a~~~l~-~~~~~g~~i~v~~~~~~~-------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 133 (399)
|+|+|.++.=|++.+..-. ...+++..+.|..++... -......+++.|+|||...++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999998522 224566666665543221 11234567899999999999999876654
No 212
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.39 E-value=0.27 Score=41.75 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=48.5
Q ss_pred eEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 015870 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376 (399)
Q Consensus 307 ~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l 376 (399)
=|-|-++|+... .-|..+|++||.|.+..... + -.+..|.|.++-+|.+|| ..||..|+|..+
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~--n---gNwMhirYssr~~A~KAL-skng~ii~g~vm 261 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS--N---GNWMHIRYSSRTHAQKAL-SKNGTIIDGDVM 261 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecCC--C---CceEEEEecchhHHHHhh-hhcCeeeccceE
Confidence 366767776543 45778999999998876542 2 348999999999999999 569999988644
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.03 E-value=0.85 Score=30.53 Aligned_cols=58 Identities=19% Similarity=0.353 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHhccC-----CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 34 NVTDSQLYDLFNQMG-----QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 34 ~~~~~~l~~~f~~~g-----~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
.++..+|..++...+ .|-.|.+... |+||+-... .|..++..|++..+.|++++|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 467888888887653 5667888654 889987655 788999999999999999999753
No 214
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.07 E-value=0.055 Score=37.27 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=46.7
Q ss_pred EEEEeCCHHHHHHHHHHh-CCCccCCceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHH
Q 015870 246 GFVNFENSDDAARAVEAL-NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324 (399)
Q Consensus 246 ~~v~f~~~~~a~~a~~~l-~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~ 324 (399)
|.|.|.+..-|.+.+..- +...+++..+.+...+-....... -+.....+.++|.|+|||...++++|+|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k---------~qv~~~vs~rtVlvsgip~~l~ee~l~D 71 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQK---------FQVFSGVSKRTVLVSGIPDVLDEEELRD 71 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceE---------EEEEEcccCCEEEEeCCCCCCChhhhee
Confidence 578999999999887632 333455666555443321111100 0112345788999999999999999988
Q ss_pred hhc
Q 015870 325 LFS 327 (399)
Q Consensus 325 ~f~ 327 (399)
.++
T Consensus 72 ~Le 74 (88)
T PF07292_consen 72 KLE 74 (88)
T ss_pred eEE
Confidence 764
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.22 E-value=5.3 Score=25.96 Aligned_cols=55 Identities=16% Similarity=0.369 Sum_probs=43.6
Q ss_pred cCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 015870 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (399)
Q Consensus 316 ~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 378 (399)
.++.+|++.-+.+|+ ..+|. .+.+ | =+|.|.+..+|.+-....++..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~--~d~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIR--DDRT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEE--ecCC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999999995 44443 4433 2 589999999999999999999998877654
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.18 E-value=0.42 Score=45.25 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=63.6
Q ss_pred hccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 301 ~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
+.++..+|||+|+.+.+..+-++.+....|.|.++.... |+|..|..+..+..|+..++-..++|..+.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 356778999999999999999999999999998776433 899999999999999999999999988887765
Q ss_pred e
Q 015870 381 A 381 (399)
Q Consensus 381 a 381 (399)
.
T Consensus 108 d 108 (668)
T KOG2253|consen 108 D 108 (668)
T ss_pred h
Confidence 3
No 217
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.88 E-value=8.8 Score=36.21 Aligned_cols=87 Identities=18% Similarity=0.245 Sum_probs=66.0
Q ss_pred CCCCCCccEEEEcCCCCC-CCHHHHHHHHhcc----CCeEEEEEeeeC----------CCCC------------------
Q 015870 17 NANQFGTTSLYVGDLEAN-VTDSQLYDLFNQM----GQVVSVRVCRDL----------STRR------------------ 63 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~-~~~~~l~~~f~~~----g~v~~i~~~~~~----------~~~~------------------ 63 (399)
+.-...+++|-|-|+.|+ +.-.+|.-+|+.| |.|.+|.|+..- -.|+
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 344678999999999999 6888999988876 588888874321 1122
Q ss_pred -------------------cccEEEEEeCCHHHHHHHHHHhCCCCCC--CcccEEeeccCC
Q 015870 64 -------------------SLGYGYVNFSNAQEAARALEMLNFTPLN--GKPIRVMYSHRD 103 (399)
Q Consensus 64 -------------------~~g~a~V~f~~~~~A~~a~~~l~~~~~~--g~~i~v~~~~~~ 103 (399)
..-||.|+|.+.+.|......++|..|. +..+-+.+-+.+
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 1348999999999999999999999886 556666665543
No 218
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=82.26 E-value=1.3 Score=34.92 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=54.0
Q ss_pred ceEEEecCCCcCCH-----HHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe-eEEEE
Q 015870 306 ANLYIKNLDDSIDD-----EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-PLYVA 379 (399)
Q Consensus 306 ~~l~v~nl~~~~~~-----~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~-~l~v~ 379 (399)
.++++.+++..+-. .+...+|.+|-...-.++++. .+...|.|.+.+.|..|...++...|.|+ .+..=
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs-----frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS-----FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh-----hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 45677777765422 355677777766555555554 45688999999999999999999999988 77777
Q ss_pred Eeee
Q 015870 380 LAQR 383 (399)
Q Consensus 380 ~a~~ 383 (399)
+|.+
T Consensus 86 faQ~ 89 (193)
T KOG4019|consen 86 FAQP 89 (193)
T ss_pred EccC
Confidence 7664
No 219
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=81.71 E-value=1.7 Score=33.83 Aligned_cols=115 Identities=15% Similarity=0.024 Sum_probs=75.7
Q ss_pred EEEcCCC--CCCCHHHHHHHHhc-cCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccC
Q 015870 26 LYVGDLE--ANVTDSQLYDLFNQ-MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (399)
Q Consensus 26 l~v~nLP--~~~~~~~l~~~f~~-~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (399)
.+|+.+. .+.+...|.+.+.+ ++....+.+..-. .++..+.|.+.+++.+++.. ..-.+.|..+.+....+
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSP 91 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEec-ccccccccchhhhhhcc
Confidence 4444442 23667777777765 3433334443221 14889999999999999984 55667888888877764
Q ss_pred CcccccCC----CceEEEcCCCcc-cCHHHHHHHhcccCCeEEEEEeeC
Q 015870 103 DPSLRKSG----AGNIFIKNLDKA-IDHKALHDTFSAFGNILSCKVATD 146 (399)
Q Consensus 103 ~~~~~~~~----~~~l~v~nlp~~-~t~~~l~~~f~~~g~v~~~~~~~~ 146 (399)
........ .-=+.+.|||.. .+++-+..+.+..|.+..+.....
T Consensus 92 ~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 92 DFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 43322221 112668999998 567788899999999987766544
No 220
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=80.93 E-value=3.6 Score=34.82 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=35.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCe-EEEEEeeeCCCCCcccEEEEEeCCHH
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQV-VSVRVCRDLSTRRSLGYGYVNFSNAQ 76 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g~v-~~i~~~~~~~~~~~~g~a~V~f~~~~ 76 (399)
-.+-|+|+|||.++.-.||+..+.+.+.+ .++.-. ...|-||+-|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCcc
Confidence 34459999999999999999999987632 223221 22357999998754
No 221
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=79.33 E-value=2.8 Score=40.07 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=62.1
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
...-++.-++||+|+-.-+..+-++..+..+|-|.++.... |+|..|.....+-+|+..++...++|..+.
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 33356778999999999999999999999999888776543 789999999999999998888888887766
Q ss_pred Eee
Q 015870 97 VMY 99 (399)
Q Consensus 97 v~~ 99 (399)
+..
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 544
No 222
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=74.37 E-value=5.4 Score=26.16 Aligned_cols=63 Identities=13% Similarity=0.277 Sum_probs=47.8
Q ss_pred HHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccCC
Q 015870 38 SQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (399)
Q Consensus 38 ~~l~~~f~~~g-~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (399)
++|.+-|...| +|.++.-+..+.++..-..-||++....+...++. -..+++..|+|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~---Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYK---IKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceee---hHhhCCeEEEEecCCCC
Confidence 46888888888 88888888777666677788999988877555544 36688889999876543
No 223
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=73.32 E-value=10 Score=26.07 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=39.0
Q ss_pred cCCCcCCHHHHHHhhcC-cC-CceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 015870 312 NLDDSIDDEKLKQLFSP-FG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365 (399)
Q Consensus 312 nl~~~~~~~dl~~~f~~-~G-~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 365 (399)
-++..++..+|+..++. || .|.+|+......+. --|+|++..-++|......
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~--KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE--KKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--EEEEEEeCCCCcHHHHHHh
Confidence 36789999999999977 55 67788766655432 2599999998888876544
No 224
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=71.06 E-value=19 Score=24.77 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=43.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015870 26 LYVGDLEANVTDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (399)
Q Consensus 26 l~v~nLP~~~~~~~l~~~f~~-~g-~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l 85 (399)
-|.--++.+++-.+|++.++. || .|.+|....-... .--|+|.+....+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~---~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG---EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---cEEEEEEeCCCCcHHHHHHhh
Confidence 455567888999999999986 56 7888887765432 127999999999998886653
No 225
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=70.16 E-value=22 Score=23.99 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=43.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-cC-CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015870 25 SLYVGDLEANVTDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (399)
Q Consensus 25 ~l~v~nLP~~~~~~~l~~~f~~-~g-~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l 85 (399)
.-|+-.++.+++-.+|++.++. || .|.+|....-.... --|+|.+....+|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~---KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE---KKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---eEEEEEECCCCcHHHHHHhh
Confidence 3566678899999999999987 56 77777776553221 27999999999988876643
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=70.01 E-value=6.7 Score=28.93 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=27.9
Q ss_pred ceEEEecCCCcC---------CHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHH
Q 015870 306 ANLYIKNLDDSI---------DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358 (399)
Q Consensus 306 ~~l~v~nl~~~~---------~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~ 358 (399)
.+++|.|++... +-+.|++.|+.|..++ ++.+.... -++|+|+|.|..--.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWS 68 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChH
Confidence 467788887543 5578999999997664 55554443 468899999986433
No 227
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=68.55 E-value=9.4 Score=24.91 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=47.4
Q ss_pred HHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccCC
Q 015870 38 SQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (399)
Q Consensus 38 ~~l~~~f~~~g-~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (399)
++|.+-|...| ++..+.-+....++..-++=+|+.....+-.. .++-..++|..+.|+..+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46888888888 88888888777666666788898888766555 34556788999999876543
No 228
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=68.47 E-value=21 Score=24.10 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=38.8
Q ss_pred EecCCCcCCHHHHHHhhcC-cC-CceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 015870 310 IKNLDDSIDDEKLKQLFSP-FG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365 (399)
Q Consensus 310 v~nl~~~~~~~dl~~~f~~-~G-~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 365 (399)
+=.++..++..+|+..++. || .|.+|+....+.+. --|+|++..-++|...-..
T Consensus 18 ~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~--KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE--KKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--eEEEEEECCCCcHHHHHHh
Confidence 3347789999999999977 55 57777765554332 2499999988887766543
No 229
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=68.46 E-value=5.9 Score=35.34 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=48.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEe-eeCCCC-CcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQ-VVSVRVC-RDLSTR-RSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~-v~~i~~~-~~~~~~-~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
..-..+.|+.||+..++.++.+.+..+-. |....+. .+.+.. .-.+.|||.|..+++.......++|..|.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 44568999999999999999888776532 1111111 111111 11458999999999988888888877553
No 230
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.40 E-value=15 Score=33.04 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=47.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g-~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~ 84 (399)
..=.+.|-|.+.|.....+||...|+.|+ .--+|.-+.+. .||-.|.+...|..|+..
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 34568899999999999999999999985 33445555553 799999999999999984
No 231
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.81 E-value=16 Score=32.81 Aligned_cols=64 Identities=22% Similarity=0.271 Sum_probs=49.0
Q ss_pred CceEEEecCCCcCCHHHHHHhhcCcCC-ceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFSPFGS-ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~~~G~-v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 375 (399)
...|-|.++|...--+||...|+.|+. =.+|+|+.+ -.||..|.+..-|..|+.. .--++.=|+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~-kh~~lKiRp 455 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL-KHDWLKIRP 455 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc-cCceEEeee
Confidence 456899999999999999999999973 346777766 2799999999999999954 333443333
No 232
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=63.80 E-value=8.6 Score=32.67 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=37.1
Q ss_pred CceEEEecCCCcCCHHHHHHhhcCcC-CceEEEEeeCCCCCcccEEEEEeCCHH
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPE 357 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~~~G-~v~~v~~~~~~~~~~~g~afV~f~~~~ 357 (399)
...|+++||+-++...||+..+.+-| ...++.+-- +.|-||++|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCcc
Confidence 34599999999999999999998776 345555432 3677999998754
No 233
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=63.64 E-value=6.6 Score=31.04 Aligned_cols=74 Identities=26% Similarity=0.424 Sum_probs=53.6
Q ss_pred ccEEEEcCCCCCC--CHHH---HHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc-ccE
Q 015870 23 TTSLYVGDLEANV--TDSQ---LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK-PIR 96 (399)
Q Consensus 23 ~~~l~v~nLP~~~--~~~~---l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~-~i~ 96 (399)
..++.+.+++..+ +..+ -..+|.+|.+..-..+++.. +..-|.|.+++.|..|...++...|.|. .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 3457778888774 2222 34567777765555555543 3788999999999999999999999887 787
Q ss_pred EeeccC
Q 015870 97 VMYSHR 102 (399)
Q Consensus 97 v~~~~~ 102 (399)
..++..
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 777654
No 234
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.54 E-value=11 Score=27.73 Aligned_cols=56 Identities=13% Similarity=0.239 Sum_probs=30.5
Q ss_pred EEEEcCCCCCC---------CHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCH-HHHHHHHH
Q 015870 25 SLYVGDLEANV---------TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA-QEAARALE 83 (399)
Q Consensus 25 ~l~v~nLP~~~---------~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~-~~A~~a~~ 83 (399)
++.|-|+|... +.++|.+.|+.|.++. +....+. ...+|+|.|.|... ..-..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 45677776654 3467999999998864 6666553 35678999999876 33344443
No 235
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=60.54 E-value=8.1 Score=30.01 Aligned_cols=85 Identities=14% Similarity=0.022 Sum_probs=57.3
Q ss_pred eeEEEEEecCHHHHHHHHHHhcCCccCCceeeeecccccccchhhcccCCcceEEeecCCcC-ccHHHHHHHhcccCCee
Q 015870 152 KGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSES-TTEEDLQKSFGEYGTIT 230 (399)
Q Consensus 152 ~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~i~~l~~~-~~~~~l~~~f~~~g~v~ 230 (399)
.++..+.|.+.+++.+++. .....+.+..+.+....+.............-=+.|.+||.. .+++-+..+.+..|.+.
T Consensus 55 ~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i 133 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPI 133 (153)
T ss_pred CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeE
Confidence 5688999999999999887 345566777777766654332221111111122567899998 57788888889999988
Q ss_pred EEEEEEC
Q 015870 231 SAVVMRD 237 (399)
Q Consensus 231 ~~~~~~~ 237 (399)
.+.....
T Consensus 134 ~vD~~t~ 140 (153)
T PF14111_consen 134 EVDENTL 140 (153)
T ss_pred EEEcCCC
Confidence 8765433
No 236
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=57.89 E-value=22 Score=22.71 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=16.0
Q ss_pred HHHHHhhcCcCCceEEEEeeC
Q 015870 320 EKLKQLFSPFGSITSCKVMRD 340 (399)
Q Consensus 320 ~dl~~~f~~~G~v~~v~~~~~ 340 (399)
.+|+++|+..|.|.=+.+..-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 589999999998875555433
No 237
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=54.75 E-value=2 Score=39.99 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=54.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
+....++++++|++++++-.+|..++..+--+..+-+-.+..........+|.|.-.-+...|+..||+..+....+
T Consensus 227 n~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 227 NTHKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hhhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 34567899999999999999999999887433333332222222234477899999988899998888876655443
No 238
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=51.76 E-value=21 Score=28.28 Aligned_cols=69 Identities=13% Similarity=0.076 Sum_probs=45.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~-~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
++++.. |.+...++|.++-+ |.+.++..-+.... ...+|-.||+|.+.++|..++.. +...+....+..
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r 181 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKR 181 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHH
Confidence 344444 44455566666666 78888877554322 25688999999999999998886 434344444433
No 239
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=50.31 E-value=40 Score=30.49 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=52.6
Q ss_pred ccCCceEEEecCCCc-CCHHHHHHhhcCc----CCceEEEEeeCCCCCc-------------------------------
Q 015870 302 KFQGANLYIKNLDDS-IDDEKLKQLFSPF----GSITSCKVMRDPSGIS------------------------------- 345 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~-~~~~dl~~~f~~~----G~v~~v~~~~~~~~~~------------------------------- 345 (399)
+.++..|.|-|+.|. +...||.-.|+.| |.+..|.|.+..-|+.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 445677888899884 6778888887654 4566677665432111
Q ss_pred -----------------------------------ccEEEEEeCCHHHHHHHHHHhcCceecCe
Q 015870 346 -----------------------------------RGSGFVAFSTPEEASRALLEMNGKMVVSK 374 (399)
Q Consensus 346 -----------------------------------~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 374 (399)
..||.|++.+.+.+.......+|..+...
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s 286 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS 286 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc
Confidence 23799999999999999988899888654
No 240
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=49.13 E-value=71 Score=23.24 Aligned_cols=105 Identities=22% Similarity=0.302 Sum_probs=57.3
Q ss_pred CCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--CCCCcccEEeeccCCcccc
Q 015870 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT--PLNGKPIRVMYSHRDPSLR 107 (399)
Q Consensus 30 nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~--~~~g~~i~v~~~~~~~~~~ 107 (399)
-||+-++. |-++|+.-|.|.+|-.+.. +.+ ..|+-.++|+ .++|+ |.|.-....
T Consensus 10 VlPPYTnK--LSDYfeSPGKI~svItvtq-------------ypd----ndal~~~~G~lE~vDg~-i~IGs~q~~---- 65 (145)
T TIGR02542 10 VLPPYTNK--LSDYFESPGKIQSVITVTQ-------------YPD----NDALLYVHGTLEQVDGN-IRIGSGQTP---- 65 (145)
T ss_pred ecCCccch--hhHHhcCCCceEEEEEEec-------------cCC----chhhheeeeehhhccCc-EEEccCCCc----
Confidence 37777654 8899999999988755433 221 1233345554 24454 444322211
Q ss_pred cCCCceEEEcC---------CCcccCHHHHHHHhcc---cCCeEEEEEeeC-CCCCceeEEEEEecCH
Q 015870 108 KSGAGNIFIKN---------LDKAIDHKALHDTFSA---FGNILSCKVATD-LNGQSKGYGFVQFDNE 162 (399)
Q Consensus 108 ~~~~~~l~v~n---------lp~~~t~~~l~~~f~~---~g~v~~~~~~~~-~~~~~~g~a~v~f~~~ 162 (399)
..+++.+ -|..+|..+++++|+. |..|..-.+..+ ....+-..||.-|...
T Consensus 66 ----~sV~i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 66 ----ASVRIQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ----ccEEEecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 1233332 3557899999999976 333433333343 2222344677776544
No 241
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.42 E-value=3.9 Score=37.00 Aligned_cols=80 Identities=8% Similarity=-0.009 Sum_probs=61.0
Q ss_pred EEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCC-CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecHH
Q 015870 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386 (399)
Q Consensus 308 l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 386 (399)
-++..+|...+++++.-+|+.||-|.-+.+-+..+ +-..-.+|++-.+ ++|..-+..+.-..+.|..++++++.+--.
T Consensus 6 ~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s~~ 84 (572)
T KOG4365|consen 6 KSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSSSE 84 (572)
T ss_pred hhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchhhh
Confidence 45778999999999999999999887776655443 3345568888877 566666777777888999999999886554
Q ss_pred HH
Q 015870 387 RR 388 (399)
Q Consensus 387 ~~ 388 (399)
.|
T Consensus 85 ~r 86 (572)
T KOG4365|consen 85 KR 86 (572)
T ss_pred hh
Confidence 44
No 242
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=45.68 E-value=57 Score=20.87 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=17.4
Q ss_pred HHHHHHhcccCCeeEEEEEECC
Q 015870 217 EDLQKSFGEYGTITSAVVMRDG 238 (399)
Q Consensus 217 ~~l~~~f~~~g~v~~~~~~~~~ 238 (399)
.+|++.|+.+|.|.-+.+....
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 6899999999998877665543
No 243
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=44.49 E-value=44 Score=29.88 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=36.2
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccCCcccccCCCceEEEcCCCcccCHHHHHHHhc
Q 015870 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133 (399)
Q Consensus 68 a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 133 (399)
|||+|.+..+|+.|.+.+... ..+.+++..++.+.+ +.=.||..+..+..++..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~D--------I~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPDD--------IIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCccc--------ccccccCCChHHHHHHHHHH
Confidence 799999999999999965443 335557777665433 44456655544555554443
No 244
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=42.69 E-value=33 Score=27.23 Aligned_cols=70 Identities=23% Similarity=0.134 Sum_probs=45.4
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCC--CcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG--ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
++++.. +.....++|..+-+ |.+.++.+....++ .-+|..||+|.+.++|.+-+ .-+........|..++
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~-~~~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFAND-DTHEEKGAETELKRSG 183 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhh-hhhhhhccchHHHHHH
Confidence 455554 33334455555555 78888887666554 45789999999999998645 4455555555555555
No 245
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=41.99 E-value=1.1e+02 Score=22.53 Aligned_cols=46 Identities=13% Similarity=0.294 Sum_probs=28.6
Q ss_pred CCHHHHHHHHhccC-----CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHH
Q 015870 35 VTDSQLYDLFNQMG-----QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81 (399)
Q Consensus 35 ~~~~~l~~~f~~~g-----~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a 81 (399)
++.+||++.+++.- .|.-..+-....+|++.|+|.| |.+.+.|.+.
T Consensus 35 vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 35 VSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 66788888776541 2222223334456788899988 6777766643
No 246
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=41.27 E-value=32 Score=22.52 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=42.0
Q ss_pred HHHHHhhcCcC-CceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeec
Q 015870 320 EKLKQLFSPFG-SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (399)
Q Consensus 320 ~dl~~~f~~~G-~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 384 (399)
++|.+-|...| .|.++.-+... ++....--||+.+...+... .++=..+++..++|+..+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 56788887777 67787655554 55566678888887655333 34556778888888876644
No 247
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=40.52 E-value=83 Score=22.03 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=36.5
Q ss_pred CCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 015870 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (399)
Q Consensus 30 nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~ 86 (399)
.+-+..+...|..-|..-|. .++ ....+.+.++-+|.|.|.+.+.+..|...|-
T Consensus 19 S~~p~l~~~~i~~Q~~~~gk-k~~--pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGK-KNK--PPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCCc-ccC--CchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 34445677777766665563 111 2223456678899999999999999998764
No 248
>PRK10905 cell division protein DamX; Validated
Probab=39.37 E-value=1e+02 Score=27.26 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=35.3
Q ss_pred CceEEEecCCCcCCHHHHHHhhcCcCCceEE-EEeeCCCCCcccEEEE--EeCCHHHHHHHHHHhc
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSC-KVMRDPSGISRGSGFV--AFSTPEEASRALLEMN 367 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v-~~~~~~~~~~~g~afV--~f~~~~~A~~A~~~l~ 367 (399)
..+|-|.. ..+.+.+..+..+.| +... .+....+|+.. |..+ .|.+.++|.+|+..|-
T Consensus 247 ~YTLQL~A---~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 247 HYTLQLSS---SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred ceEEEEEe---cCCHHHHHHHHHHcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCC
Confidence 34555554 445677777777764 3322 22333455433 3333 3999999999999884
No 249
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=38.77 E-value=40 Score=28.64 Aligned_cols=89 Identities=17% Similarity=0.286 Sum_probs=55.5
Q ss_pred HHhhhccCCceEEEecCCCc------------CCHHHHHHhhcCcCCceEEEEeeCC------CCCcc-----cEEE---
Q 015870 297 KEAADKFQGANLYIKNLDDS------------IDDEKLKQLFSPFGSITSCKVMRDP------SGISR-----GSGF--- 350 (399)
Q Consensus 297 ~~~~~~~~~~~l~v~nl~~~------------~~~~dl~~~f~~~G~v~~v~~~~~~------~~~~~-----g~af--- 350 (399)
.+..++..+.+|++.+||-. -+++-|+..|..||.|..|.|+.-+ +|+.. ||+|
T Consensus 141 demkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~d 220 (445)
T KOG2891|consen 141 DEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGD 220 (445)
T ss_pred hccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcc
Confidence 33445667788999999832 3567899999999999888775421 34432 2322
Q ss_pred ------EEeCCHHHHHHHHHHhcCcee----cC----eeEEEEEeeecH
Q 015870 351 ------VAFSTPEEASRALLEMNGKMV----VS----KPLYVALAQRKE 385 (399)
Q Consensus 351 ------V~f~~~~~A~~A~~~l~~~~~----~g----~~l~v~~a~~~~ 385 (399)
|.|-.-..-..|+..|.|..+ .| -+++|.|.+++-
T Consensus 221 lffeayvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrh 269 (445)
T KOG2891|consen 221 LFFEAYVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRH 269 (445)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhh
Confidence 333333334456666666544 22 367788777654
No 250
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=38.09 E-value=5.7 Score=37.18 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=53.0
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCe
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 374 (399)
..++|++.|++++.+..+|..++..+-.+..+-+.... ..+-..+.+|+|+---...-||.+||+..+...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 45789999999999999999999988655554433321 122234688999988888889999988776543
No 251
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=37.89 E-value=1.8e+02 Score=21.97 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=50.1
Q ss_pred CCccEEEEcCCCCC---CCHHHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 21 FGTTSLYVGDLEAN---VTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 21 ~~~~~l~v~nLP~~---~~~~~l~~~f~~~g-~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
.+...|.|+..... .+...|++.+.+-| .+.++..-.+ ...|.|.+.++-.+|.+.++...-.+-.+.
T Consensus 33 gedpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VA 104 (127)
T PRK10629 33 QQESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIA 104 (127)
T ss_pred CCCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEE
Confidence 34556777766444 56677999999888 6666665433 689999999999999998875543344444
Q ss_pred Eeecc
Q 015870 97 VMYSH 101 (399)
Q Consensus 97 v~~~~ 101 (399)
...++
T Consensus 105 lnl~p 109 (127)
T PRK10629 105 QQDDN 109 (127)
T ss_pred EecCC
Confidence 44443
No 252
>PRK11901 hypothetical protein; Reviewed
Probab=37.28 E-value=1.4e+02 Score=26.58 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=47.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCC-cccEEEEEeCCHHHHHHHHHHhC
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR-SLGYGYVNFSNAQEAARALEMLN 86 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~-~~g~a~V~f~~~~~A~~a~~~l~ 86 (399)
..+...-+|-|..+.. ++.|..|.++.+ +.+++++...+.|+ +.-.-+=.|.+.++|+.|+..|-
T Consensus 240 s~p~~~YTLQL~Aas~---~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 240 SAPASHYTLQLSSASR---SDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred cCCCCCeEEEeecCCC---HHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCC
Confidence 3466777888887644 777888888886 35677777666665 43344457999999999999875
No 253
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=36.08 E-value=54 Score=21.68 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=20.7
Q ss_pred EEEEEeCCHHHHHHHHHHhcCcee
Q 015870 348 SGFVAFSTPEEASRALLEMNGKMV 371 (399)
Q Consensus 348 ~afV~f~~~~~A~~A~~~l~~~~~ 371 (399)
+.+|+|.|..+|.+|-+.|...-+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999999999999999976544
No 254
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=34.26 E-value=22 Score=32.10 Aligned_cols=59 Identities=27% Similarity=0.289 Sum_probs=46.3
Q ss_pred ceEEEecCCCcCCH--------HHHHHhhcC--cCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHH
Q 015870 306 ANLYIKNLDDSIDD--------EKLKQLFSP--FGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364 (399)
Q Consensus 306 ~~l~v~nl~~~~~~--------~dl~~~f~~--~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~ 364 (399)
+.+|+.+.+...+. +++...|.. .+.+..++..++. +...+|..|++|+..+.|++...
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45666666654443 499999988 6778888877776 67788999999999999999884
No 255
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=33.43 E-value=39 Score=28.13 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=30.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV 53 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i 53 (399)
.+.....++++-|+|...|++.|.++.+++|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 567788999999999999999999999999854433
No 256
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=32.39 E-value=1.7e+02 Score=28.16 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=36.8
Q ss_pred HHHHHHhhc----CcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 015870 319 DEKLKQLFS----PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (399)
Q Consensus 319 ~~dl~~~f~----~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 367 (399)
--||..+|. .+|.|.++.+...+....+...++.|.+.++|..++..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 346777775 6788888877665544455678899999999999998864
No 257
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=32.07 E-value=1.4e+02 Score=23.04 Aligned_cols=49 Identities=12% Similarity=0.377 Sum_probs=35.0
Q ss_pred CCCcCCHHHHHHhhcC-cC-CceEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q 015870 313 LDDSIDDEKLKQLFSP-FG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363 (399)
Q Consensus 313 l~~~~~~~dl~~~f~~-~G-~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~ 363 (399)
++..++..+|+..++. |+ .|..|..+..+.|.- -|+|.+..-.+|....
T Consensus 89 Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aidva 139 (145)
T PTZ00191 89 VDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALDVA 139 (145)
T ss_pred EcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHHHH
Confidence 6678999999999976 55 567776665554433 4999998777765443
No 258
>PRK11901 hypothetical protein; Reviewed
Probab=31.24 E-value=1.2e+02 Score=26.81 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=37.8
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeC-CCCCcccEEEEE--eCCHHHHHHHHHHhcC
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVA--FSTPEEASRALLEMNG 368 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~-~~~~~~g~afV~--f~~~~~A~~A~~~l~~ 368 (399)
...+|-|.. ..++++|..|..+++ +..+++... .+|+.- |..|. |.+.++|..|+..|-.
T Consensus 244 ~~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 344555544 456788888887774 444444332 244433 44443 9999999999998854
No 259
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=31.09 E-value=1.4e+02 Score=19.86 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=27.7
Q ss_pred HHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 015870 43 LFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (399)
Q Consensus 43 ~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 90 (399)
.+.+||.|..+.-... |+.+ |.+.+++...+..+....|
T Consensus 16 ~L~kfG~i~Y~Skk~k--------Yvvl-Yvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKKMK--------YVVL-YVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECCcc--------EEEE-EECHHHHHHHHHHHhcCCC
Confidence 4678999876643222 5544 8899999999998875543
No 260
>PF14861 Antimicrobial21: Plant antimicrobial peptide
Probab=30.43 E-value=20 Score=19.27 Aligned_cols=11 Identities=45% Similarity=0.878 Sum_probs=7.7
Q ss_pred HHhhhhhhccC
Q 015870 389 ARLQVCLLQCR 399 (399)
Q Consensus 389 ~~~~~~~~~~~ 399 (399)
-+.|.|.|+|+
T Consensus 18 ~~kq~Cv~~C~ 28 (31)
T PF14861_consen 18 WRKQQCVQDCR 28 (31)
T ss_pred HHHHHHHHHHH
Confidence 45577888875
No 261
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=29.91 E-value=87 Score=28.33 Aligned_cols=66 Identities=14% Similarity=0.329 Sum_probs=47.4
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcCC-ceEEEEeeCC---CCCcccEEEEEeCCHHHHHHHHHHhcCcee
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFGS-ITSCKVMRDP---SGISRGSGFVAFSTPEEASRALLEMNGKMV 371 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G~-v~~v~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 371 (399)
..|.|.+||+..+..++..-..++-. |....+.+.. .....+.|+|.|...++...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 57899999999999999888877542 2233333221 111356799999999998888888888877
No 262
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=29.14 E-value=85 Score=22.13 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=19.0
Q ss_pred CceEEEEeeC-CCCCcccEEEEEeCC
Q 015870 331 SITSCKVMRD-PSGISRGSGFVAFST 355 (399)
Q Consensus 331 ~v~~v~~~~~-~~~~~~g~afV~f~~ 355 (399)
.|.+|++.+- ..|+.+++|-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 3677777655 367889999999988
No 263
>PF14893 PNMA: PNMA
Probab=29.04 E-value=41 Score=30.09 Aligned_cols=27 Identities=7% Similarity=0.131 Sum_probs=22.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhc
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQ 46 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~ 46 (399)
-...+.|+|.|||.++++++|.+.+..
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHH
Confidence 456688999999999999999887653
No 264
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=28.61 E-value=2.1e+02 Score=22.09 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=39.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 015870 26 LYVGDLEANVTDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84 (399)
Q Consensus 26 l~v~nLP~~~~~~~l~~~f~~-~g-~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~ 84 (399)
-|+--+...++-.+|++.++. |+ .|..|..+.-.. | . --|||.+....+|......
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g-~-KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G-L-KKAYIRLSPDVDALDVANK 141 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C-c-eEEEEEECCCCcHHHHHHh
Confidence 456667888999999999886 55 677777665432 1 1 2799999888887665544
No 265
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=27.93 E-value=89 Score=21.46 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=20.3
Q ss_pred CceEEEEeeCC-CCCcccEEEEEeCC
Q 015870 331 SITSCKVMRDP-SGISRGSGFVAFST 355 (399)
Q Consensus 331 ~v~~v~~~~~~-~~~~~g~afV~f~~ 355 (399)
.|.+|+|.+.. +|+.+-++-|+|.+
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~ 27 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDN 27 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecc
Confidence 46788887765 78899999999987
No 266
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=27.91 E-value=25 Score=22.91 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=27.1
Q ss_pred HHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 015870 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (399)
Q Consensus 320 ~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 367 (399)
++|.+.|..++....+. +-.+|.-|++.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~v---------kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV---------KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhh---------hhhhccCCCCHHHHHHHHHHhh
Confidence 67888887654333221 1249999999999999887653
No 267
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=27.57 E-value=1.1e+02 Score=20.33 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=27.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHhc------------CceecCeeEEEEEeeec
Q 015870 346 RGSGFVAFSTPEEASRALLEMN------------GKMVVSKPLYVALAQRK 384 (399)
Q Consensus 346 ~g~afV~f~~~~~A~~A~~~l~------------~~~~~g~~l~v~~a~~~ 384 (399)
+..+-|.|.+.+.|..++..|. .....|..|.|.+.-.+
T Consensus 2 ~~~l~i~f~s~~~A~ii~~sL~~d~e~~~~~~~~~~~~~~~~L~i~~~A~d 52 (76)
T PF09341_consen 2 SFTLEIPFESEEKAEIIYRSLKPDKELKPSRVKRELSVDGNKLVITIEAED 52 (76)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHH-SS-SSEEEEEEESSEEEEEEEESS
T ss_pred EEEEEEEeCCHHHHHHHHHHhCCCCCCCCCcEEEEEEEeCCEEEEEEEECC
Confidence 3468899999999999998882 12336777877776543
No 268
>PRK10905 cell division protein DamX; Validated
Probab=26.94 E-value=1.4e+02 Score=26.35 Aligned_cols=63 Identities=13% Similarity=0.041 Sum_probs=44.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCC-cccEEEEEeCCHHHHHHHHHHhC
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR-SLGYGYVNFSNAQEAARALEMLN 86 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~-~~g~a~V~f~~~~~A~~a~~~l~ 86 (399)
+...-+|-|..+.. ++.|.+|..+.| +....++...+.|. +...-+=.|.+.++|++|+..|-
T Consensus 244 pa~~YTLQL~A~Ss---~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 244 PSSHYTLQLSSSSN---YDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred CCCceEEEEEecCC---HHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCC
Confidence 45566777776654 577888887775 34555666666666 55555567999999999999874
No 269
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=25.17 E-value=1.8e+02 Score=18.07 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=39.0
Q ss_pred eEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCH----HHHHHHHHH
Q 015870 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP----EEASRALLE 365 (399)
Q Consensus 307 ~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~----~~A~~A~~~ 365 (399)
++.|.|+.=.-....|...+...-.|.++.+... .+.+-|.|... ++...+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----CCEEEEEEecCCCCHHHHHHHHHH
Confidence 4667777777777889999988878998887665 45788888754 444455543
No 270
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=24.53 E-value=2.2e+02 Score=18.93 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=31.8
Q ss_pred CHHHHHHhhcCcC-CceEEEEeeCCCCCcccEEEEEeCC---HHHHHHHHHHhcC
Q 015870 318 DDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFST---PEEASRALLEMNG 368 (399)
Q Consensus 318 ~~~dl~~~f~~~G-~v~~v~~~~~~~~~~~g~afV~f~~---~~~A~~A~~~l~~ 368 (399)
...++.+.|.++| .+.++...+..++...-.-+|+++. .++...+++.|..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4578889998886 5677764444333333355666663 4566677776654
No 271
>PRK02302 hypothetical protein; Provisional
Probab=24.21 E-value=2e+02 Score=20.03 Aligned_cols=55 Identities=15% Similarity=0.101 Sum_probs=34.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 90 (399)
++.+-.||+.++-. ...+.+||.|..+.-... |+. -|.+.++|...+..+....|
T Consensus 6 ~R~glIVyl~~~k~-------~r~LrkfG~I~Y~Skk~k--------Yvv-lYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 6 ERIGLIVYLYYNRD-------ARKLSKYGDIVYHSKRSR--------YLV-LYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred ceeEEEEEEeecHh-------HHHHhhcCcEEEEecccc--------EEE-EEECHHHHHHHHHHHhcCCC
Confidence 44455566655422 234678999876643221 554 48899999999998875543
No 272
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=23.73 E-value=1.3e+02 Score=20.64 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=19.2
Q ss_pred CceEEEEeeCC-CCCcccEEEEEeCC
Q 015870 331 SITSCKVMRDP-SGISRGSGFVAFST 355 (399)
Q Consensus 331 ~v~~v~~~~~~-~~~~~g~afV~f~~ 355 (399)
.|.++++.+-. .|+.+++|-|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36678776655 48889999999987
No 273
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=23.50 E-value=1.1e+02 Score=26.29 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCe
Q 015870 23 TTSLYVGDLEANVTDSQLYDLFNQMGQV 50 (399)
Q Consensus 23 ~~~l~v~nLP~~~~~~~l~~~f~~~g~v 50 (399)
.....|+|||++++-.-|..++...-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 4578899999999999999998765443
No 274
>PF14893 PNMA: PNMA
Probab=22.83 E-value=68 Score=28.74 Aligned_cols=23 Identities=4% Similarity=0.306 Sum_probs=20.1
Q ss_pred CceEEEecCCCcCCHHHHHHhhc
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFS 327 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~ 327 (399)
-+.|.|.+||.++++++|.+.+.
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHH
Confidence 46799999999999999988865
No 275
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=21.99 E-value=73 Score=30.26 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=35.3
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecH
Q 015870 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (399)
Q Consensus 345 ~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 385 (399)
...+|+++|++...+.+|+..++|....+..+++..+.+..
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 35689999999999999999999999999888888766443
No 276
>PRK02886 hypothetical protein; Provisional
Probab=21.94 E-value=2.4e+02 Score=19.56 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=35.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 90 (399)
++.+-.||+.++-. ...+.+||.|..+.--.. |+. -|.+.++|...+..+....|
T Consensus 4 ~R~glIVyl~~~k~-------~r~LrkyG~I~Y~Skr~k--------Yvv-lYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 4 NRQGIIVWLHSLKQ-------AKQLRKFGNVHYVSKRLK--------YAV-LYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred CeeEEEEEEeecHh-------HHHHhhcCcEEEEecccc--------EEE-EEECHHHHHHHHHHHhcCCC
Confidence 44555666655422 234678999876643221 554 48899999999998875543
No 277
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=21.90 E-value=3.1e+02 Score=19.63 Aligned_cols=47 Identities=13% Similarity=0.252 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHh-ccCCeEEEEEe----eeCCCCCcccEEEEEeCCHHHHHHH
Q 015870 34 NVTDSQLYDLFN-QMGQVVSVRVC----RDLSTRRSLGYGYVNFSNAQEAARA 81 (399)
Q Consensus 34 ~~~~~~l~~~f~-~~g~v~~i~~~----~~~~~~~~~g~a~V~f~~~~~A~~a 81 (399)
..+..+|++.+. .++.=.+..++ .....|.++|+|.| |.+.+.|++.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 346677777665 34422222222 22334667888887 6777776654
No 278
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=21.18 E-value=1.3e+02 Score=19.31 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=22.8
Q ss_pred HHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEE
Q 015870 37 DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70 (399)
Q Consensus 37 ~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V 70 (399)
+.+|..+|-+--.|.++.++..++-++ |.|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri~~--G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRIRK--GAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEeeeC--CceeE
Confidence 345777777767899999998876554 45665
No 279
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=20.77 E-value=3.8e+02 Score=20.21 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=46.8
Q ss_pred CceEEEecCCCc---CCHHHHHHhhcCcC-CceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 305 GANLYIKNLDDS---IDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 305 ~~~l~v~nl~~~---~~~~dl~~~f~~~G-~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
...|.|+..... .+-..+...+..-| .++++....+ ...|.|.+.++-.+|.+.|....=++-.|.+.+
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~-------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl 107 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND-------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQD 107 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC-------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 345666665333 45677888887766 4555543322 689999999999999988876554444555555
Q ss_pred ee
Q 015870 381 AQ 382 (399)
Q Consensus 381 a~ 382 (399)
+.
T Consensus 108 ~p 109 (127)
T PRK10629 108 DN 109 (127)
T ss_pred CC
Confidence 44
No 280
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=20.54 E-value=3.4e+02 Score=26.43 Aligned_cols=79 Identities=8% Similarity=0.220 Sum_probs=55.4
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCCCCCcccEE--------------eeccCCc-----ccccCCCceEEEcCCCcccCHHH
Q 015870 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRV--------------MYSHRDP-----SLRKSGAGNIFIKNLDKAIDHKA 127 (399)
Q Consensus 67 ~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v--------------~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~~ 127 (399)
-|++++.+++..+-..+.|+...+.+-.|.- .|++.+. ..+.-....+|+.+|+.++.++-
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dV 317 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDV 317 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHH
Confidence 6999999999988888888876655444332 2222211 11222356799999999999887
Q ss_pred HHHHhcccCCeEEEEEee
Q 015870 128 LHDTFSAFGNILSCKVAT 145 (399)
Q Consensus 128 l~~~f~~~g~v~~~~~~~ 145 (399)
=.++.......+++.+.+
T Consensus 318 Q~~~irsipGlEna~i~r 335 (621)
T COG0445 318 QEQIIRSIPGLENAEILR 335 (621)
T ss_pred HHHHHHhCcccccceeec
Confidence 778888887888888875
No 281
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=20.44 E-value=83 Score=26.85 Aligned_cols=33 Identities=12% Similarity=0.396 Sum_probs=25.3
Q ss_pred ccEEEEcCCCCCC------------CHHHHHHHHhccCCeEEEEE
Q 015870 23 TTSLYVGDLEANV------------TDSQLYDLFNQMGQVVSVRV 55 (399)
Q Consensus 23 ~~~l~v~nLP~~~------------~~~~l~~~f~~~g~v~~i~~ 55 (399)
.-||++.+||-.+ +++-|+..|+.||.|..|.|
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 3578999998653 34568999999998877765
No 282
>PHA01632 hypothetical protein
Probab=20.05 E-value=1.2e+02 Score=18.73 Aligned_cols=22 Identities=9% Similarity=0.280 Sum_probs=18.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc
Q 015870 25 SLYVGDLEANVTDSQLYDLFNQ 46 (399)
Q Consensus 25 ~l~v~nLP~~~~~~~l~~~f~~ 46 (399)
.|.|-.+|..-|+++|+..+.+
T Consensus 18 yilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 18 YILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EEehhhcCCCCCHHHHHHHHHH
Confidence 3667899999999999987654
Done!