Query 015870
Match_columns 399
No_of_seqs 172 out of 2205
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 03:57:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 3.8E-46 1.3E-50 326.5 32.0 256 21-397 20-277 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 2.4E-45 8.3E-50 322.8 26.2 254 16-384 34-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 4.6E-34 1.6E-38 238.2 19.0 172 20-192 12-183 (213)
4 4f02_A Polyadenylate-binding p 100.0 8.7E-33 3E-37 230.5 22.7 177 200-393 13-190 (213)
5 3md3_A Nuclear and cytoplasmic 100.0 1E-31 3.4E-36 215.9 20.2 164 24-188 1-165 (166)
6 2qfj_A FBP-interacting repress 100.0 3.4E-32 1.2E-36 228.4 18.1 173 20-192 25-207 (216)
7 1b7f_A Protein (SXL-lethal pro 100.0 3E-31 1E-35 213.5 21.3 163 22-186 2-167 (168)
8 3md3_A Nuclear and cytoplasmic 100.0 3.9E-31 1.3E-35 212.4 20.1 165 203-383 1-166 (166)
9 1fxl_A Paraneoplastic encephal 100.0 8.1E-31 2.8E-35 210.8 21.8 162 22-185 1-165 (167)
10 1l3k_A Heterogeneous nuclear r 100.0 4.5E-31 1.5E-35 218.0 20.3 178 14-193 4-186 (196)
11 1l3k_A Heterogeneous nuclear r 100.0 2.1E-30 7.3E-35 214.0 21.4 182 199-394 10-193 (196)
12 3nmr_A Cugbp ELAV-like family 100.0 4E-30 1.4E-34 208.4 21.4 165 22-187 2-174 (175)
13 1b7f_A Protein (SXL-lethal pro 100.0 2.4E-30 8.2E-35 208.2 18.8 163 201-381 2-168 (168)
14 1fxl_A Paraneoplastic encephal 100.0 7.7E-30 2.6E-34 205.0 21.3 162 202-381 2-167 (167)
15 2qfj_A FBP-interacting repress 100.0 6.9E-30 2.4E-34 214.3 21.8 181 200-387 26-208 (216)
16 3nmr_A Cugbp ELAV-like family 100.0 1.6E-29 5.6E-34 204.8 19.7 165 201-382 2-175 (175)
17 2cjk_A Nuclear polyadenylated 100.0 1.1E-30 3.8E-35 209.9 12.6 165 21-190 1-166 (167)
18 2cjk_A Nuclear polyadenylated 100.0 4.9E-30 1.7E-34 206.1 14.7 163 201-384 2-166 (167)
19 1fje_B Nucleolin RBD12, protei 100.0 1.3E-30 4.3E-35 211.2 10.7 168 17-190 7-174 (175)
20 3smz_A Protein raver-1, ribonu 100.0 1.4E-28 4.8E-33 215.0 21.1 173 21-193 93-267 (284)
21 2g4b_A Splicing factor U2AF 65 100.0 1.5E-28 5.3E-33 198.4 18.7 158 21-187 2-171 (172)
22 1fje_B Nucleolin RBD12, protei 100.0 1.3E-29 4.3E-34 205.2 10.7 165 199-384 10-174 (175)
23 2adc_A Polypyrimidine tract-bi 100.0 3.1E-28 1.1E-32 205.2 19.5 164 17-189 28-227 (229)
24 3pgw_A U1-A; protein-RNA compl 100.0 3.8E-28 1.3E-32 212.0 20.5 164 17-187 3-280 (282)
25 2g4b_A Splicing factor U2AF 65 100.0 1.3E-28 4.5E-33 198.7 16.1 157 201-381 3-171 (172)
26 3tyt_A Heterogeneous nuclear r 100.0 1.6E-28 5.5E-33 202.0 16.8 155 21-181 2-194 (205)
27 2yh0_A Splicing factor U2AF 65 100.0 5.5E-28 1.9E-32 199.8 17.8 164 21-191 2-195 (198)
28 3pgw_A U1-A; protein-RNA compl 100.0 1.3E-27 4.4E-32 208.7 19.5 178 199-382 6-281 (282)
29 2yh0_A Splicing factor U2AF 65 100.0 7.4E-28 2.5E-32 199.0 15.8 179 201-385 3-195 (198)
30 3tyt_A Heterogeneous nuclear r 100.0 3E-28 1E-32 200.4 13.0 176 201-381 3-204 (205)
31 3sde_A Paraspeckle component 1 100.0 3E-27 1E-31 203.3 19.8 163 15-191 14-180 (261)
32 1qm9_A Polypyrimidine tract-bi 100.0 1.2E-27 3.9E-32 197.7 16.0 159 22-189 2-196 (198)
33 2ghp_A U4/U6 snRNA-associated 100.0 7.5E-28 2.6E-32 211.3 15.7 169 20-190 114-291 (292)
34 3sde_A Paraspeckle component 1 100.0 2.9E-27 9.7E-32 203.4 18.6 158 199-385 19-180 (261)
35 2adc_A Polypyrimidine tract-bi 100.0 5E-28 1.7E-32 204.0 13.5 178 199-384 31-228 (229)
36 1qm9_A Polypyrimidine tract-bi 99.9 5.7E-27 1.9E-31 193.5 13.2 175 202-384 3-197 (198)
37 4f25_A Polyadenylate-binding p 99.9 3.9E-22 1.3E-26 148.2 10.5 106 20-127 2-113 (115)
38 4fxv_A ELAV-like protein 1; RN 99.9 1.1E-21 3.7E-26 141.1 11.0 82 302-383 16-98 (99)
39 2kn4_A Immunoglobulin G-bindin 99.9 2.9E-22 1E-26 158.6 6.9 143 241-388 11-154 (158)
40 3s8s_A Histone-lysine N-methyl 99.9 4.8E-21 1.6E-25 140.5 12.3 91 302-392 3-94 (110)
41 4fxv_A ELAV-like protein 1; RN 99.8 6.6E-21 2.2E-25 137.1 10.9 83 20-102 16-98 (99)
42 2i2y_A Fusion protein consists 99.8 8E-22 2.7E-26 154.4 4.5 138 241-385 11-149 (150)
43 2lxi_A RNA-binding protein 10; 99.8 1.8E-21 6.1E-26 137.9 4.2 83 305-387 1-86 (91)
44 2e5h_A Zinc finger CCHC-type a 99.8 4.3E-20 1.5E-24 132.3 10.7 92 10-101 3-94 (94)
45 2lkz_A RNA-binding protein 5; 99.8 2.2E-20 7.4E-25 132.5 8.9 82 302-383 6-94 (95)
46 3r27_A HnRNP L, heterogeneous 99.8 3.1E-20 1.1E-24 131.2 9.4 82 299-385 15-98 (100)
47 1x5s_A Cold-inducible RNA-bind 99.8 9.3E-20 3.2E-24 132.7 12.2 94 13-106 2-95 (102)
48 4f25_A Polyadenylate-binding p 99.8 2.9E-20 1E-24 138.1 9.2 85 305-390 5-89 (115)
49 1sjq_A Polypyrimidine tract-bi 99.8 9.8E-21 3.3E-25 135.3 6.0 84 300-388 11-96 (105)
50 1x5u_A Splicing factor 3B subu 99.8 2.1E-19 7.3E-24 131.5 13.3 94 12-105 4-97 (105)
51 3bs9_A Nucleolysin TIA-1 isofo 99.8 9.6E-20 3.3E-24 128.5 10.9 82 303-384 4-86 (87)
52 2cqc_A Arginine/serine-rich sp 99.8 1.3E-19 4.3E-24 130.2 11.5 91 12-102 4-94 (95)
53 3s8s_A Histone-lysine N-methyl 99.8 1.1E-19 3.7E-24 133.2 11.2 84 20-103 3-86 (110)
54 2wbr_A GW182, gawky, LD47780P; 99.8 5.8E-20 2E-24 124.5 8.8 78 303-385 5-82 (89)
55 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.3E-20 2.2E-24 145.7 10.4 145 248-392 11-160 (165)
56 2lkz_A RNA-binding protein 5; 99.8 2.8E-20 9.5E-25 132.0 7.4 86 17-102 3-94 (95)
57 3md1_A Nuclear and cytoplasmic 99.8 1.4E-19 4.7E-24 126.4 10.9 81 305-385 1-82 (83)
58 2do4_A Squamous cell carcinoma 99.8 8.4E-20 2.9E-24 132.4 9.9 85 302-386 14-98 (100)
59 2kxn_B Transformer-2 protein h 99.8 1.2E-19 4.1E-24 137.2 11.1 92 12-103 35-126 (129)
60 2lxi_A RNA-binding protein 10; 99.8 1.9E-20 6.4E-25 132.6 6.2 83 23-105 1-85 (91)
61 2x1f_A MRNA 3'-END-processing 99.8 1.5E-19 5.1E-24 129.9 10.7 88 304-391 1-89 (96)
62 2dgs_A DAZ-associated protein 99.8 4.8E-19 1.6E-23 128.1 13.3 90 15-105 2-91 (99)
63 2cq0_A Eukaryotic translation 99.8 2.6E-19 9E-24 130.5 12.0 92 14-105 6-97 (103)
64 2dgo_A Cytotoxic granule-assoc 99.8 5.1E-19 1.8E-23 131.8 13.6 96 11-106 3-98 (115)
65 2ywk_A Putative RNA-binding pr 99.8 1.6E-19 5.6E-24 129.6 10.3 92 10-102 3-94 (95)
66 2kn4_A Immunoglobulin G-bindin 99.8 2.5E-19 8.5E-24 141.7 12.2 139 52-192 2-152 (158)
67 2dnm_A SRP46 splicing factor; 99.8 2.9E-19 1E-23 130.2 11.6 92 14-105 4-95 (103)
68 2dnh_A Bruno-like 5, RNA bindi 99.8 6.9E-20 2.4E-24 134.1 8.2 88 302-389 12-102 (105)
69 1whw_A Hypothetical protein ri 99.8 1.2E-19 4.2E-24 131.2 9.4 87 302-388 5-92 (99)
70 2ad9_A Polypyrimidine tract-bi 99.8 6.5E-20 2.2E-24 134.6 7.9 90 302-399 28-119 (119)
71 2cph_A RNA binding motif prote 99.8 5.7E-19 1.9E-23 129.8 13.0 95 12-106 4-100 (107)
72 2ywk_A Putative RNA-binding pr 99.8 1.6E-19 5.4E-24 129.6 9.7 83 301-383 12-94 (95)
73 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.8E-19 6E-24 126.5 9.4 81 302-382 4-85 (85)
74 2d9p_A Polyadenylate-binding p 99.8 7.8E-20 2.7E-24 133.3 7.8 87 302-389 12-98 (103)
75 2d9p_A Polyadenylate-binding p 99.8 7E-19 2.4E-23 128.2 12.8 93 11-105 3-95 (103)
76 1x5t_A Splicing factor 3B subu 99.8 6.9E-20 2.4E-24 131.8 7.3 86 303-388 3-90 (96)
77 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.8E-19 6.3E-24 131.1 9.6 93 13-105 2-94 (102)
78 2do4_A Squamous cell carcinoma 99.8 6.2E-19 2.1E-23 127.8 12.3 92 12-104 6-97 (100)
79 1s79_A Lupus LA protein; RRM, 99.8 9.1E-20 3.1E-24 131.8 7.8 85 303-388 9-93 (103)
80 3ns6_A Eukaryotic translation 99.8 5.3E-20 1.8E-24 132.9 6.5 84 304-387 5-96 (100)
81 1x4h_A RNA-binding protein 28; 99.8 6.9E-19 2.4E-23 130.3 12.5 94 12-105 4-103 (111)
82 2dnz_A Probable RNA-binding pr 99.8 3.3E-19 1.1E-23 128.0 10.3 85 303-387 3-88 (95)
83 2cq0_A Eukaryotic translation 99.8 1.7E-19 5.8E-24 131.5 8.6 87 302-388 12-99 (103)
84 1oo0_B CG8781-PA, drosophila Y 99.8 2.7E-19 9.2E-24 132.1 9.7 86 302-387 23-109 (110)
85 2cpz_A CUG triplet repeat RNA- 99.8 8.2E-19 2.8E-23 130.6 12.3 89 17-105 19-107 (115)
86 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.6E-19 1.6E-23 125.0 10.4 84 20-103 3-86 (87)
87 2cpz_A CUG triplet repeat RNA- 99.8 1.8E-19 6.3E-24 134.1 8.7 87 302-388 22-109 (115)
88 3p5t_L Cleavage and polyadenyl 99.8 9.1E-20 3.1E-24 129.2 6.6 83 306-388 2-87 (90)
89 1p27_B RNA-binding protein 8A; 99.8 8.1E-19 2.8E-23 128.7 11.9 91 13-103 13-103 (106)
90 2cq3_A RNA-binding protein 9; 99.8 1.5E-18 5.2E-23 126.4 13.2 93 11-105 3-95 (103)
91 1whw_A Hypothetical protein ri 99.8 9.8E-19 3.4E-23 126.5 12.1 87 19-105 4-90 (99)
92 2e5h_A Zinc finger CCHC-type a 99.8 6.1E-19 2.1E-23 126.3 10.8 81 302-382 13-94 (94)
93 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.1E-19 1.7E-23 124.2 10.2 83 19-101 3-85 (85)
94 2hgl_A HNRPF protein, heteroge 99.8 1.6E-19 5.6E-24 136.8 8.0 90 10-101 31-123 (136)
95 2dng_A Eukaryotic translation 99.8 1.3E-18 4.4E-23 126.7 12.5 92 12-105 4-95 (103)
96 2cqd_A RNA-binding region cont 99.8 1.3E-18 4.3E-23 129.8 12.6 94 10-104 4-97 (116)
97 2dnz_A Probable RNA-binding pr 99.8 1.7E-18 6E-23 124.2 12.9 86 20-105 2-87 (95)
98 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.2E-19 7.7E-24 130.6 8.2 87 302-388 9-96 (102)
99 2dh8_A DAZ-associated protein 99.8 5.7E-19 2E-23 129.2 10.3 94 11-105 4-97 (105)
100 2cq1_A PTB-like protein L; RRM 99.8 2.5E-19 8.5E-24 128.5 8.1 82 302-388 12-95 (101)
101 3lqv_A PRE-mRNA branch site pr 99.8 5.8E-19 2E-23 131.5 10.5 106 19-137 4-109 (115)
102 2cqc_A Arginine/serine-rich sp 99.8 6.2E-19 2.1E-23 126.6 10.2 82 302-383 12-94 (95)
103 2la6_A RNA-binding protein FUS 99.8 1.4E-18 4.8E-23 125.6 12.1 87 15-101 5-99 (99)
104 1p27_B RNA-binding protein 8A; 99.8 4E-19 1.4E-23 130.3 9.4 85 302-386 20-105 (106)
105 2dgs_A DAZ-associated protein 99.8 3.8E-19 1.3E-23 128.6 9.1 86 302-388 7-93 (99)
106 2jrs_A RNA-binding protein 39; 99.8 1.4E-18 4.8E-23 127.2 12.1 89 15-103 18-106 (108)
107 1x4d_A Matrin 3; structural ge 99.8 2.2E-19 7.4E-24 128.5 7.5 78 303-385 13-93 (102)
108 2lea_A Serine/arginine-rich sp 99.8 3.2E-20 1.1E-24 141.7 3.4 126 245-389 6-132 (135)
109 2jrs_A RNA-binding protein 39; 99.8 2.7E-19 9.4E-24 131.0 8.2 84 302-385 23-107 (108)
110 2div_A TRNA selenocysteine ass 99.8 9.7E-19 3.3E-23 126.5 11.0 88 16-103 2-94 (99)
111 3md1_A Nuclear and cytoplasmic 99.8 1.1E-18 3.9E-23 121.7 11.0 81 23-103 1-81 (83)
112 2i2y_A Fusion protein consists 99.8 7.2E-19 2.5E-23 137.5 11.1 125 61-190 9-148 (150)
113 1wi8_A EIF-4B, eukaryotic tran 99.8 1.4E-18 4.7E-23 126.8 11.9 92 12-105 4-96 (104)
114 2fy1_A RNA-binding motif prote 99.8 6.3E-19 2.1E-23 130.9 10.1 85 303-387 5-89 (116)
115 1x5s_A Cold-inducible RNA-bind 99.8 2.4E-19 8.3E-24 130.5 7.7 87 302-388 9-96 (102)
116 2khc_A Testis-specific RNP-typ 99.8 6.7E-19 2.3E-23 131.8 10.3 85 17-101 34-118 (118)
117 3ulh_A THO complex subunit 4; 99.8 1E-18 3.5E-23 128.4 11.0 83 301-383 25-107 (107)
118 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.9E-19 1.7E-23 129.1 9.1 86 302-388 12-97 (103)
119 2cq3_A RNA-binding protein 9; 99.8 1.3E-18 4.5E-23 126.7 11.3 86 302-388 12-97 (103)
120 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.2E-18 7.4E-23 125.6 12.4 92 12-105 4-95 (103)
121 1wg5_A Heterogeneous nuclear r 99.8 1.6E-18 5.6E-23 126.1 11.6 89 14-104 6-95 (104)
122 2dgx_A KIAA0430 protein; RRM d 99.8 7.9E-19 2.7E-23 125.9 9.7 81 303-385 7-91 (96)
123 2err_A Ataxin-2-binding protei 99.8 4.8E-19 1.7E-23 130.1 8.8 84 300-384 24-107 (109)
124 3n9u_C Cleavage and polyadenyl 99.8 1E-18 3.6E-23 136.4 11.2 86 304-389 54-142 (156)
125 2dgv_A HnRNP M, heterogeneous 99.8 3.1E-19 1.1E-23 127.3 7.4 84 302-386 5-88 (92)
126 1wez_A HnRNP H', FTP-3, hetero 99.8 1.3E-18 4.4E-23 125.8 10.8 89 13-104 5-93 (102)
127 2x1f_A MRNA 3'-END-processing 99.8 1.1E-18 3.9E-23 125.3 10.4 83 22-104 1-83 (96)
128 1p1t_A Cleavage stimulation fa 99.8 6E-19 2.1E-23 128.9 9.0 89 304-392 7-96 (104)
129 2cqp_A RNA-binding protein 12; 99.8 7.1E-19 2.4E-23 126.9 9.3 89 15-103 7-95 (98)
130 2dgo_A Cytotoxic granule-assoc 99.8 7.4E-19 2.5E-23 130.9 9.6 88 302-389 12-100 (115)
131 2cpf_A RNA binding motif prote 99.8 3.4E-19 1.2E-23 128.7 7.5 86 303-388 3-92 (98)
132 2cpy_A RNA-binding protein 12; 99.8 7.5E-19 2.6E-23 130.3 9.6 89 302-391 12-101 (114)
133 2ek1_A RNA-binding protein 12; 99.8 2.9E-19 1E-23 128.2 7.1 85 18-102 10-94 (95)
134 1x5u_A Splicing factor 3B subu 99.8 3.2E-19 1.1E-23 130.6 7.4 86 302-387 12-98 (105)
135 2cpe_A RNA-binding protein EWS 99.8 1.8E-18 6.2E-23 128.3 11.6 90 16-105 8-105 (113)
136 2dgp_A Bruno-like 4, RNA bindi 99.8 2.6E-18 8.9E-23 125.9 12.2 90 16-105 6-98 (106)
137 2do0_A HnRNP M, heterogeneous 99.8 3.6E-18 1.2E-22 127.0 13.1 89 14-103 6-94 (114)
138 2cph_A RNA binding motif prote 99.8 4.7E-19 1.6E-23 130.2 8.1 87 302-388 12-101 (107)
139 1wi8_A EIF-4B, eukaryotic tran 99.8 6E-19 2E-23 128.8 8.6 85 302-388 12-98 (104)
140 2dnm_A SRP46 splicing factor; 99.8 2.1E-19 7.2E-24 131.0 6.1 87 302-388 10-97 (103)
141 2dnh_A Bruno-like 5, RNA bindi 99.8 6.1E-18 2.1E-22 123.7 14.0 88 17-105 9-99 (105)
142 2dgw_A Probable RNA-binding pr 99.8 1.2E-18 4.1E-23 123.8 9.9 82 302-385 7-88 (91)
143 2do0_A HnRNP M, heterogeneous 99.8 1E-18 3.6E-23 129.9 9.9 85 302-386 12-96 (114)
144 2a3j_A U1 small nuclear ribonu 99.8 5.4E-19 1.8E-23 132.4 8.4 89 302-392 26-118 (127)
145 3ulh_A THO complex subunit 4; 99.8 1.8E-18 6E-23 127.1 11.0 86 15-101 21-106 (107)
146 4a8x_A RNA-binding protein wit 99.8 4.6E-19 1.6E-23 125.3 7.6 83 304-386 3-87 (88)
147 2la6_A RNA-binding protein FUS 99.8 1.4E-18 4.8E-23 125.6 10.2 82 301-382 9-99 (99)
148 2db1_A Heterogeneous nuclear r 99.8 1.3E-18 4.4E-23 129.6 10.2 86 303-389 15-103 (118)
149 2dhg_A TRNA selenocysteine ass 99.8 1.6E-19 5.4E-24 132.0 5.1 89 302-390 6-96 (104)
150 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.4E-18 4.7E-23 134.5 10.7 94 7-100 47-140 (140)
151 1wex_A Hypothetical protein (r 99.8 4.6E-19 1.6E-23 128.0 7.4 82 302-388 12-95 (104)
152 2dhg_A TRNA selenocysteine ass 99.8 3.2E-18 1.1E-22 125.0 12.0 89 16-105 2-92 (104)
153 3s7r_A Heterogeneous nuclear r 99.8 1.5E-18 5.1E-23 122.2 9.9 84 16-100 4-87 (87)
154 1x5t_A Splicing factor 3B subu 99.8 1.3E-18 4.4E-23 125.1 9.8 86 20-105 2-88 (96)
155 2kxn_B Transformer-2 protein h 99.8 3.7E-19 1.3E-23 134.5 7.2 85 302-386 43-128 (129)
156 3p5t_L Cleavage and polyadenyl 99.8 5.3E-19 1.8E-23 125.2 7.5 82 24-105 2-85 (90)
157 1oo0_B CG8781-PA, drosophila Y 99.8 1.7E-18 5.7E-23 127.8 10.5 91 13-103 16-106 (110)
158 1x4h_A RNA-binding protein 28; 99.8 5.2E-19 1.8E-23 130.9 7.6 87 302-388 12-105 (111)
159 2hgl_A HNRPF protein, heteroge 99.8 8.2E-19 2.8E-23 132.9 8.8 85 303-388 42-129 (136)
160 2lea_A Serine/arginine-rich sp 99.8 8E-19 2.7E-23 133.9 8.7 91 15-105 39-129 (135)
161 2cpf_A RNA binding motif prote 99.8 2.3E-18 7.9E-23 124.2 10.5 86 20-105 2-90 (98)
162 2dng_A Eukaryotic translation 99.8 1.2E-18 4.3E-23 126.8 9.0 85 302-388 12-97 (103)
163 1u6f_A Tcubp1, RNA-binding pro 99.8 5.3E-18 1.8E-22 130.8 12.9 89 16-104 35-123 (139)
164 2wbr_A GW182, gawky, LD47780P; 99.8 3.3E-18 1.1E-22 115.9 10.1 74 21-100 5-78 (89)
165 2dgv_A HnRNP M, heterogeneous 99.8 5.6E-18 1.9E-22 120.7 12.0 86 18-105 3-88 (92)
166 1s79_A Lupus LA protein; RRM, 99.8 2.5E-18 8.6E-23 124.2 10.2 83 18-102 6-88 (103)
167 3ucg_A Polyadenylate-binding p 99.8 1.4E-18 4.9E-23 123.0 8.8 81 304-385 5-86 (89)
168 3ns6_A Eukaryotic translation 99.8 1.4E-18 4.7E-23 125.5 8.8 83 20-102 3-92 (100)
169 1x4a_A Splicing factor, argini 99.8 9.4E-18 3.2E-22 123.5 13.3 93 10-105 9-101 (109)
170 2cpi_A CCR4-NOT transcription 99.8 1.8E-18 6.1E-23 127.6 9.4 83 303-385 13-102 (111)
171 2fy1_A RNA-binding motif prote 99.8 5.3E-18 1.8E-22 125.8 12.0 85 19-104 3-87 (116)
172 1sjq_A Polypyrimidine tract-bi 99.8 2.5E-18 8.5E-23 122.8 9.7 82 18-105 11-94 (105)
173 1p1t_A Cleavage stimulation fa 99.8 1.4E-18 4.7E-23 127.0 8.7 88 17-104 2-89 (104)
174 1x4a_A Splicing factor, argini 99.8 1.4E-18 4.7E-23 128.0 8.7 84 302-387 19-102 (109)
175 2cpe_A RNA-binding protein EWS 99.8 9.7E-19 3.3E-23 129.8 7.9 87 302-388 12-107 (113)
176 2cqg_A TDP-43, TAR DNA-binding 99.8 7.2E-18 2.4E-22 122.8 12.4 91 13-105 5-95 (103)
177 2jvo_A Nucleolar protein 3; nu 99.8 1.9E-18 6.7E-23 126.4 9.4 82 299-387 25-106 (108)
178 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.4E-19 1.5E-23 128.2 5.9 82 302-385 16-99 (100)
179 1x4c_A Splicing factor, argini 99.8 5.7E-18 2E-22 124.3 11.7 87 12-105 4-95 (108)
180 2div_A TRNA selenocysteine ass 99.8 1.4E-18 4.8E-23 125.6 8.2 84 302-385 6-95 (99)
181 2dnn_A RNA-binding protein 12; 99.8 4.9E-18 1.7E-22 123.6 11.0 79 305-385 16-94 (109)
182 1x4f_A Matrin 3; structural ge 99.8 8.6E-19 3E-23 127.1 7.0 81 302-387 22-105 (112)
183 3ex7_B RNA-binding protein 8A; 99.8 4.5E-18 1.5E-22 128.9 11.3 93 12-104 11-103 (126)
184 2dgp_A Bruno-like 4, RNA bindi 99.8 8.6E-19 2.9E-23 128.5 7.1 86 302-387 10-99 (106)
185 2khc_A Testis-specific RNP-typ 99.8 1.9E-18 6.6E-23 129.2 9.0 81 302-382 37-118 (118)
186 2rs2_A Musashi-1, RNA-binding 99.8 1.6E-18 5.6E-23 127.2 8.3 85 302-387 22-107 (109)
187 1nu4_A U1A RNA binding domain; 99.8 1E-18 3.5E-23 125.9 7.2 87 302-390 5-95 (97)
188 2cq4_A RNA binding motif prote 99.8 2.5E-18 8.6E-23 127.7 9.4 83 305-388 25-108 (114)
189 2kt5_A RNA and export factor-b 99.8 4.6E-18 1.6E-22 128.3 10.9 84 302-385 32-115 (124)
190 2ek1_A RNA-binding protein 12; 99.8 1.5E-18 5.3E-23 124.4 7.9 82 302-383 12-94 (95)
191 2jvr_A Nucleolar protein 3; RN 99.8 2.2E-18 7.6E-23 125.6 8.8 82 303-387 26-108 (111)
192 3ex7_B RNA-binding protein 8A; 99.8 1.3E-18 4.4E-23 131.8 7.8 87 302-388 19-106 (126)
193 2dh8_A DAZ-associated protein 99.8 4.8E-19 1.6E-23 129.6 5.2 87 302-389 13-100 (105)
194 2kt5_A RNA and export factor-b 99.8 8.1E-18 2.8E-22 126.9 12.1 88 15-103 27-114 (124)
195 2dgw_A Probable RNA-binding pr 99.8 5.6E-18 1.9E-22 120.3 10.6 86 16-104 3-88 (91)
196 2lmi_A GRSF-1, G-rich sequence 99.8 8.8E-19 3E-23 128.3 6.5 87 303-390 9-98 (107)
197 3lqv_A PRE-mRNA branch site pr 99.8 2.4E-18 8.4E-23 128.1 9.1 84 302-387 5-88 (115)
198 1x4e_A RNA binding motif, sing 99.8 7.3E-19 2.5E-23 123.3 5.8 81 303-383 3-84 (85)
199 2cqp_A RNA-binding protein 12; 99.8 2.2E-18 7.4E-23 124.4 8.2 83 302-384 12-95 (98)
200 3s7r_A Heterogeneous nuclear r 99.8 7.2E-18 2.5E-22 118.7 10.7 80 301-381 7-87 (87)
201 1x4e_A RNA binding motif, sing 99.8 1.2E-18 4.2E-23 122.1 6.7 82 20-101 2-83 (85)
202 1why_A Hypothetical protein ri 99.8 2.4E-18 8.2E-23 123.8 8.2 79 302-385 14-94 (97)
203 1wex_A Hypothetical protein (r 99.8 1.5E-17 5.1E-22 120.0 12.2 88 12-105 4-93 (104)
204 2ad9_A Polypyrimidine tract-bi 99.8 9.8E-18 3.4E-22 123.0 11.4 89 11-105 19-109 (119)
205 4a8x_A RNA-binding protein wit 99.8 4.5E-18 1.6E-22 120.2 9.4 83 21-103 2-85 (88)
206 3ucg_A Polyadenylate-binding p 99.7 5.4E-18 1.8E-22 120.0 9.7 82 21-103 4-85 (89)
207 2dha_A FLJ20171 protein; RRM d 99.7 2.5E-18 8.4E-23 127.9 8.2 87 302-389 20-110 (123)
208 2fc9_A NCL protein; structure 99.7 2.6E-18 8.8E-23 124.7 8.2 83 302-387 12-94 (101)
209 1x4d_A Matrin 3; structural ge 99.7 4.5E-18 1.5E-22 121.6 9.3 86 15-106 7-95 (102)
210 2cqd_A RNA-binding region cont 99.7 1.6E-18 5.6E-23 129.1 7.2 86 302-388 14-100 (116)
211 2dgx_A KIAA0430 protein; RRM d 99.7 7.2E-18 2.4E-22 120.9 10.2 85 17-104 3-91 (96)
212 1why_A Hypothetical protein ri 99.7 1.7E-17 5.9E-22 119.3 12.1 83 16-104 10-94 (97)
213 1x5o_A RNA binding motif, sing 99.7 6.6E-18 2.3E-22 125.5 10.2 82 303-384 23-112 (114)
214 1u6f_A Tcubp1, RNA-binding pro 99.7 2.1E-18 7.1E-23 133.2 7.7 87 302-388 39-126 (139)
215 2hgm_A HNRPF protein, heteroge 99.7 3.1E-18 1.1E-22 127.5 8.3 87 13-102 32-120 (126)
216 2m2b_A RNA-binding protein 10; 99.7 4.2E-18 1.4E-22 129.6 9.2 89 14-103 14-108 (131)
217 2dnq_A RNA-binding protein 4B; 99.7 3E-18 1E-22 121.5 7.8 80 302-388 5-84 (90)
218 1wez_A HnRNP H', FTP-3, hetero 99.7 3.6E-18 1.2E-22 123.4 8.3 82 302-385 12-93 (102)
219 2la4_A Nuclear and cytoplasmic 99.7 5.8E-18 2E-22 122.8 9.3 78 302-384 24-101 (101)
220 1x4c_A Splicing factor, argini 99.7 3.7E-18 1.3E-22 125.2 8.4 81 303-389 13-98 (108)
221 2cpy_A RNA-binding protein 12; 99.7 3E-18 1E-22 127.1 7.9 86 16-103 8-94 (114)
222 1x4g_A Nucleolysin TIAR; struc 99.7 2.6E-18 8.9E-23 126.5 7.5 83 301-388 21-103 (109)
223 2hvz_A Splicing factor, argini 99.7 4.6E-18 1.6E-22 123.4 8.8 92 24-120 1-100 (101)
224 1h2v_Z 20 kDa nuclear CAP bind 99.7 6.3E-18 2.1E-22 133.1 10.2 87 302-388 36-123 (156)
225 3r27_A HnRNP L, heterogeneous 99.7 7.9E-18 2.7E-22 118.9 9.6 82 16-103 14-97 (100)
226 2mss_A Protein (musashi1); RNA 99.7 2.4E-18 8.2E-23 117.4 6.7 74 307-381 1-75 (75)
227 1wg5_A Heterogeneous nuclear r 99.7 2.5E-18 8.4E-23 125.2 7.2 83 303-386 13-96 (104)
228 2xnq_A Nuclear polyadenylated 99.7 1E-17 3.5E-22 120.1 10.3 78 301-385 18-96 (97)
229 2mss_A Protein (musashi1); RNA 99.7 4E-18 1.4E-22 116.4 7.7 75 25-100 1-75 (75)
230 2nlw_A Eukaryotic translation 99.7 2.3E-18 7.9E-23 125.6 6.9 82 303-385 13-101 (105)
231 2cpj_A Non-POU domain-containi 99.7 5.2E-18 1.8E-22 122.5 8.7 79 302-385 12-90 (99)
232 2ytc_A PRE-mRNA-splicing facto 99.7 7.1E-18 2.4E-22 118.2 9.1 76 302-382 9-85 (85)
233 1wel_A RNA-binding protein 12; 99.7 3.5E-18 1.2E-22 128.8 7.8 85 303-388 23-108 (124)
234 3n9u_C Cleavage and polyadenyl 99.7 9.7E-18 3.3E-22 130.9 10.4 81 22-102 54-136 (156)
235 2kvi_A Nuclear polyadenylated 99.7 5.7E-18 1.9E-22 121.4 8.4 82 301-389 6-88 (96)
236 2cq1_A PTB-like protein L; RRM 99.7 2.3E-17 8E-22 118.2 11.4 83 17-105 9-93 (101)
237 2fc9_A NCL protein; structure 99.7 1.7E-17 5.8E-22 120.3 10.5 90 12-105 4-93 (101)
238 2e5j_A Methenyltetrahydrofolat 99.7 3.1E-17 1.1E-21 117.9 11.7 85 14-103 10-94 (97)
239 2dis_A Unnamed protein product 99.7 2.5E-18 8.4E-23 126.8 6.0 86 303-388 6-96 (109)
240 2jwn_A Embryonic polyadenylate 99.7 7.8E-18 2.7E-22 127.1 8.8 81 305-386 36-117 (124)
241 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.8E-18 2E-22 122.4 7.7 87 15-103 11-98 (100)
242 2m2b_A RNA-binding protein 10; 99.7 1.2E-18 4E-23 132.7 4.2 84 302-386 20-110 (131)
243 2a3j_A U1 small nuclear ribonu 99.7 2.4E-17 8.3E-22 123.4 11.3 85 17-104 23-111 (127)
244 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.8E-18 1.7E-22 116.7 7.0 75 306-381 1-76 (77)
245 2hgn_A Heterogeneous nuclear r 99.7 2E-18 7E-23 131.1 5.5 85 17-104 40-124 (139)
246 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.3E-18 1.5E-22 116.9 6.7 76 24-100 1-76 (77)
247 1x4b_A Heterogeneous nuclear r 99.7 6.6E-18 2.3E-22 125.9 8.2 83 304-387 26-109 (116)
248 2cqg_A TDP-43, TAR DNA-binding 99.7 6.9E-18 2.4E-22 122.9 8.1 84 302-387 12-96 (103)
249 2dgt_A RNA-binding protein 30; 99.7 2.1E-17 7.4E-22 117.5 10.5 79 302-387 7-85 (92)
250 2ki2_A SS-DNA binding protein 99.7 1.9E-18 6.6E-23 122.5 5.0 82 306-388 2-84 (90)
251 2cq4_A RNA binding motif prote 99.7 6E-18 2E-22 125.7 7.9 85 18-103 20-104 (114)
252 2krb_A Eukaryotic translation 99.7 2.3E-18 7.8E-23 119.3 5.2 74 305-379 1-81 (81)
253 2db1_A Heterogeneous nuclear r 99.7 7.6E-18 2.6E-22 125.4 8.2 84 17-102 11-97 (118)
254 2cpi_A CCR4-NOT transcription 99.7 1.2E-17 4.2E-22 123.1 9.3 93 12-104 4-102 (111)
255 2dnq_A RNA-binding protein 4B; 99.7 6.1E-17 2.1E-21 114.6 12.5 79 19-105 4-82 (90)
256 2rs2_A Musashi-1, RNA-binding 99.7 1.3E-17 4.3E-22 122.4 9.2 86 17-103 19-104 (109)
257 1x5o_A RNA binding motif, sing 99.7 5.9E-17 2E-21 120.3 12.7 85 17-102 19-111 (114)
258 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.3E-17 7.9E-22 130.9 11.1 93 13-105 62-154 (165)
259 1whx_A Hypothetical protein ri 99.7 8.5E-18 2.9E-22 123.7 8.0 77 303-384 8-84 (111)
260 2ytc_A PRE-mRNA-splicing facto 99.7 2.9E-17 9.8E-22 115.1 10.3 83 13-101 2-85 (85)
261 2dis_A Unnamed protein product 99.7 2.5E-17 8.6E-22 121.3 10.5 86 20-105 5-94 (109)
262 2dgt_A RNA-binding protein 30; 99.7 4.2E-17 1.4E-21 116.0 11.1 83 15-105 2-84 (92)
263 2e5j_A Methenyltetrahydrofolat 99.7 6.5E-18 2.2E-22 121.5 6.8 80 303-386 17-96 (97)
264 2dnp_A RNA-binding protein 14; 99.7 9.7E-18 3.3E-22 118.8 7.6 79 302-387 6-84 (90)
265 2dnn_A RNA-binding protein 12; 99.7 1.7E-17 5.8E-22 120.7 8.8 84 16-102 9-92 (109)
266 2err_A Ataxin-2-binding protei 99.7 1.9E-17 6.4E-22 121.6 9.2 88 14-103 20-107 (109)
267 1fjc_A Nucleolin RBD2, protein 99.7 4.3E-18 1.5E-22 122.3 5.6 81 302-386 13-93 (96)
268 2cpj_A Non-POU domain-containi 99.7 6E-17 2E-21 116.9 11.3 87 13-105 5-91 (99)
269 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.5E-17 1.9E-21 127.7 12.0 88 17-104 33-120 (156)
270 2hvz_A Splicing factor, argini 99.7 6E-18 2E-22 122.8 6.0 77 306-386 1-77 (101)
271 2fc8_A NCL protein; structure 99.7 4.6E-17 1.6E-21 118.3 10.7 90 13-105 5-94 (102)
272 2diu_A KIAA0430 protein; struc 99.7 9.1E-17 3.1E-21 109.8 11.3 78 19-106 5-87 (96)
273 2dgu_A Heterogeneous nuclear r 99.7 9E-18 3.1E-22 122.2 6.9 80 303-389 9-88 (103)
274 2jvr_A Nucleolar protein 3; RN 99.7 1.3E-17 4.5E-22 121.5 7.7 84 18-105 23-107 (111)
275 2hgm_A HNRPF protein, heteroge 99.7 6.2E-18 2.1E-22 125.8 6.1 82 303-386 40-123 (126)
276 3egn_A RNA-binding protein 40; 99.7 7.9E-18 2.7E-22 130.4 6.9 85 302-388 42-134 (143)
277 3q2s_C Cleavage and polyadenyl 99.7 1.4E-17 4.8E-22 138.8 8.8 85 304-388 67-154 (229)
278 2jwn_A Embryonic polyadenylate 99.7 3E-17 1E-21 123.9 9.9 83 21-104 34-116 (124)
279 2dnp_A RNA-binding protein 14; 99.7 5.2E-17 1.8E-21 115.0 10.5 82 16-105 2-83 (90)
280 2ki2_A SS-DNA binding protein 99.7 6E-18 2.1E-22 119.9 5.6 80 24-104 2-81 (90)
281 2diu_A KIAA0430 protein; struc 99.7 1.3E-17 4.4E-22 114.0 6.9 75 303-386 6-86 (96)
282 2cpx_A Hypothetical protein FL 99.7 7.7E-18 2.6E-22 125.4 6.4 85 302-389 22-110 (115)
283 1wel_A RNA-binding protein 12; 99.7 1.5E-17 5.3E-22 125.3 8.0 84 18-102 20-103 (124)
284 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3E-17 1E-21 126.9 9.8 80 302-381 60-140 (140)
285 1x4b_A Heterogeneous nuclear r 99.7 2.2E-17 7.5E-22 123.0 8.6 86 19-105 23-108 (116)
286 1fj7_A Nucleolin RBD1, protein 99.7 1.1E-18 3.7E-23 126.7 1.4 83 303-387 15-98 (101)
287 2krb_A Eukaryotic translation 99.7 1.7E-17 5.8E-22 114.9 7.4 73 23-97 1-80 (81)
288 2lmi_A GRSF-1, G-rich sequence 99.7 1.4E-17 4.9E-22 121.8 7.3 84 17-102 5-91 (107)
289 1nu4_A U1A RNA binding domain; 99.7 1.4E-17 4.9E-22 119.9 7.1 85 17-104 2-90 (97)
290 1wf1_A RNA-binding protein RAL 99.7 9E-18 3.1E-22 123.8 6.1 79 303-388 25-104 (110)
291 2fc8_A NCL protein; structure 99.7 3.6E-17 1.2E-21 118.9 9.2 84 301-387 11-95 (102)
292 2cq2_A Hypothetical protein LO 99.7 7.2E-18 2.5E-22 122.2 5.4 79 302-385 22-107 (114)
293 2dha_A FLJ20171 protein; RRM d 99.7 1.5E-17 5.3E-22 123.6 7.3 80 20-101 20-103 (123)
294 1fj7_A Nucleolin RBD1, protein 99.7 9.3E-18 3.2E-22 121.7 6.0 85 18-104 12-96 (101)
295 2nlw_A Eukaryotic translation 99.7 3.6E-17 1.2E-21 119.2 9.1 84 18-103 10-100 (105)
296 2hgn_A Heterogeneous nuclear r 99.7 3.6E-18 1.2E-22 129.8 3.8 87 302-390 43-129 (139)
297 3zzy_A Polypyrimidine tract-bi 99.7 7E-17 2.4E-21 119.8 10.3 76 306-385 29-107 (130)
298 2dgu_A Heterogeneous nuclear r 99.7 8.1E-17 2.8E-21 117.1 10.5 82 16-105 4-85 (103)
299 1wg1_A KIAA1579 protein, homol 99.7 6.1E-17 2.1E-21 114.0 9.4 75 304-384 4-78 (88)
300 2xs2_A Deleted in azoospermia- 99.7 1.9E-17 6.6E-22 120.3 6.9 85 302-388 6-90 (102)
301 2lcw_A RNA-binding protein FUS 99.5 1E-18 3.4E-23 130.3 0.0 86 303-388 5-99 (116)
302 2cpd_A Apobec-1 stimulating pr 99.7 2.8E-17 9.5E-22 118.7 7.6 79 302-387 12-92 (99)
303 1iqt_A AUF1, heterogeneous nuc 99.7 1.6E-17 5.5E-22 113.3 5.9 75 25-100 1-75 (75)
304 1x4f_A Matrin 3; structural ge 99.7 6.3E-17 2.2E-21 117.3 9.3 83 17-105 19-104 (112)
305 2pe8_A Splicing factor 45; RRM 99.7 1.4E-16 4.6E-21 115.2 11.0 83 302-384 5-94 (105)
306 2cqh_A IGF-II mRNA-binding pro 99.7 2.5E-17 8.4E-22 117.5 7.0 81 302-388 5-87 (93)
307 2cpx_A Hypothetical protein FL 99.7 4.4E-17 1.5E-21 121.3 8.5 89 17-105 19-107 (115)
308 3d2w_A TAR DNA-binding protein 99.7 8.3E-17 2.8E-21 113.1 9.5 78 302-387 8-87 (89)
309 2e44_A Insulin-like growth fac 99.7 1E-16 3.5E-21 115.0 10.0 88 12-103 4-92 (96)
310 3pgw_S U1-70K; protein-RNA com 99.7 3.8E-18 1.3E-22 155.7 2.9 84 303-386 100-184 (437)
311 2la4_A Nuclear and cytoplasmic 99.7 1.2E-16 4.3E-21 115.7 10.3 77 20-102 24-100 (101)
312 1x4g_A Nucleolysin TIAR; struc 99.7 1.4E-16 4.7E-21 117.2 10.6 81 20-106 22-102 (109)
313 3beg_B Splicing factor, argini 99.7 5.1E-17 1.7E-21 120.4 8.2 83 13-102 6-93 (115)
314 2f3j_A RNA and export factor b 99.7 6.1E-17 2.1E-21 129.3 9.2 83 303-385 86-168 (177)
315 1sjr_A Polypyrimidine tract-bi 99.7 6.1E-17 2.1E-21 124.8 8.6 77 306-385 47-125 (164)
316 1iqt_A AUF1, heterogeneous nuc 99.7 1.5E-17 5E-22 113.6 4.6 74 307-381 1-75 (75)
317 2jvo_A Nucleolar protein 3; nu 99.7 1.2E-16 4.1E-21 116.8 9.7 82 15-104 23-104 (108)
318 2xnq_A Nuclear polyadenylated 99.7 2E-16 6.8E-21 113.3 10.6 81 15-103 14-95 (97)
319 2e5i_A Heterogeneous nuclear r 99.7 1.4E-16 4.9E-21 117.9 9.7 73 308-385 28-103 (124)
320 1whx_A Hypothetical protein ri 99.7 1.3E-16 4.5E-21 117.3 9.5 80 18-103 5-84 (111)
321 2f3j_A RNA and export factor b 99.7 2E-16 6.7E-21 126.4 10.8 83 20-103 85-167 (177)
322 2kvi_A Nuclear polyadenylated 99.7 2E-16 7E-21 113.3 9.7 79 18-104 5-84 (96)
323 2j8a_A Histone-lysine N-methyl 99.7 1.7E-16 5.9E-21 114.9 9.2 81 306-386 3-98 (136)
324 2cpd_A Apobec-1 stimulating pr 99.7 5.4E-16 1.8E-20 111.9 12.0 84 14-105 6-91 (99)
325 1sjr_A Polypyrimidine tract-bi 99.7 5.1E-16 1.7E-20 119.7 12.3 84 17-104 40-125 (164)
326 1x5p_A Negative elongation fac 99.7 2.8E-16 9.5E-21 112.9 10.2 78 303-387 13-90 (97)
327 1wf1_A RNA-binding protein RAL 99.7 4E-16 1.4E-20 114.9 10.9 79 19-105 23-102 (110)
328 2e44_A Insulin-like growth fac 99.7 6.7E-17 2.3E-21 116.0 6.4 80 303-385 13-93 (96)
329 1x5p_A Negative elongation fac 99.7 7.4E-16 2.5E-20 110.6 11.8 87 11-105 3-89 (97)
330 3q2s_C Cleavage and polyadenyl 99.7 1.8E-16 6.3E-21 132.1 9.5 81 22-102 67-149 (229)
331 3beg_B Splicing factor, argini 99.7 7.6E-17 2.6E-21 119.5 6.3 79 304-388 15-98 (115)
332 2xs2_A Deleted in azoospermia- 99.7 7.6E-17 2.6E-21 117.1 6.0 84 17-103 3-86 (102)
333 2e5g_A U6 snRNA-specific termi 99.7 1.4E-16 4.9E-21 113.6 7.1 79 304-387 7-85 (94)
334 2lcw_A RNA-binding protein FUS 99.5 6.9E-18 2.3E-22 125.7 0.0 87 19-105 3-97 (116)
335 1fjc_A Nucleolin RBD2, protein 99.7 1.3E-16 4.5E-21 114.5 6.8 83 17-104 10-92 (96)
336 2e5g_A U6 snRNA-specific termi 99.7 7.5E-16 2.6E-20 109.9 10.5 79 19-103 4-82 (94)
337 2cqh_A IGF-II mRNA-binding pro 99.7 3.1E-16 1.1E-20 111.7 8.2 79 19-104 4-84 (93)
338 1wg1_A KIAA1579 protein, homol 99.6 4.3E-16 1.5E-20 109.6 8.3 78 20-104 2-79 (88)
339 2bz2_A Negative elongation fac 99.6 3.9E-16 1.3E-20 116.4 8.4 80 302-388 36-115 (121)
340 3v4m_A Splicing factor U2AF 65 99.6 6.6E-16 2.2E-20 111.7 8.9 84 302-385 2-98 (105)
341 2hzc_A Splicing factor U2AF 65 99.6 7.6E-16 2.6E-20 108.3 8.1 71 303-379 4-85 (87)
342 3zzy_A Polypyrimidine tract-bi 99.6 2.5E-15 8.7E-20 111.5 11.2 86 14-104 19-107 (130)
343 2e5i_A Heterogeneous nuclear r 99.6 4.2E-15 1.4E-19 110.0 12.4 79 19-103 21-102 (124)
344 3u1l_A PRE-mRNA-splicing facto 99.6 5.1E-16 1.8E-20 128.2 8.3 86 302-392 131-237 (240)
345 1wf0_A TDP-43, TAR DNA-binding 99.6 1.9E-16 6.5E-21 111.5 4.8 79 303-387 3-81 (88)
346 2dnl_A Cytoplasmic polyadenyla 99.6 1.3E-15 4.4E-20 112.7 8.4 79 19-100 4-85 (114)
347 2cq2_A Hypothetical protein LO 99.6 1.8E-15 6.3E-20 109.6 8.9 81 18-104 20-107 (114)
348 2voo_A Lupus LA protein; RNA-b 99.6 1.9E-15 6.7E-20 122.5 10.0 82 304-386 108-189 (193)
349 2j8a_A Histone-lysine N-methyl 99.6 7.5E-16 2.6E-20 111.6 6.6 79 24-102 3-95 (136)
350 3egn_A RNA-binding protein 40; 99.6 3.6E-16 1.2E-20 121.0 5.3 81 20-103 42-130 (143)
351 2dnl_A Cytoplasmic polyadenyla 99.6 8.6E-16 2.9E-20 113.7 6.4 80 303-385 6-89 (114)
352 2pe8_A Splicing factor 45; RRM 99.6 5.9E-15 2E-19 106.6 10.2 84 20-103 5-94 (105)
353 3pgw_S U1-70K; protein-RNA com 99.6 5E-16 1.7E-20 141.8 5.4 156 30-190 4-182 (437)
354 2hzc_A Splicing factor U2AF 65 99.6 3.9E-15 1.3E-19 104.6 8.6 73 20-99 3-86 (87)
355 2dit_A HIV TAT specific factor 99.6 6.3E-15 2.2E-19 108.6 9.8 83 302-387 12-105 (112)
356 3d2w_A TAR DNA-binding protein 99.6 4.3E-15 1.5E-19 104.3 7.8 78 17-103 5-84 (89)
357 3ue2_A Poly(U)-binding-splicin 99.6 4.9E-15 1.7E-19 109.0 8.2 81 303-383 18-108 (118)
358 2bz2_A Negative elongation fac 99.6 9.9E-15 3.4E-19 108.7 9.8 81 17-105 33-113 (121)
359 2dit_A HIV TAT specific factor 99.6 2.3E-14 7.9E-19 105.6 11.5 90 12-105 4-104 (112)
360 1jmt_A Splicing factor U2AF 35 99.6 1.6E-15 5.3E-20 109.6 4.4 71 311-381 21-103 (104)
361 1wf0_A TDP-43, TAR DNA-binding 99.5 4.2E-15 1.4E-19 104.6 5.5 79 20-105 2-80 (88)
362 2voo_A Lupus LA protein; RNA-b 99.5 2.1E-14 7.3E-19 116.4 9.8 79 22-102 108-186 (193)
363 3s6e_A RNA-binding protein 39; 99.5 7.1E-14 2.4E-18 102.0 9.8 80 303-385 5-94 (114)
364 3u1l_A PRE-mRNA-splicing facto 99.5 3.8E-14 1.3E-18 117.1 9.3 82 18-105 129-231 (240)
365 3v4m_A Splicing factor U2AF 65 99.5 7E-14 2.4E-18 101.0 8.6 83 21-103 3-97 (105)
366 3ue2_A Poly(U)-binding-splicin 99.5 8.7E-14 3E-18 102.4 8.7 82 21-102 18-108 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.2E-13 7.4E-18 96.9 8.8 66 315-386 27-92 (100)
368 1jmt_A Splicing factor U2AF 35 99.4 4.9E-14 1.7E-18 101.7 4.1 73 28-101 20-104 (104)
369 2d9o_A DNAJ (HSP40) homolog, s 99.4 5.7E-12 1.9E-16 89.6 13.0 79 20-105 7-92 (100)
370 2dnr_A Synaptojanin-1; RRM dom 99.4 7.9E-13 2.7E-17 89.6 7.9 76 301-384 3-86 (91)
371 3tht_A Alkylated DNA repair pr 99.4 6.3E-13 2.2E-17 116.0 8.6 76 302-382 15-97 (345)
372 3s6e_A RNA-binding protein 39; 99.3 1.1E-11 3.7E-16 90.5 8.7 79 20-102 4-92 (114)
373 1owx_A Lupus LA protein, SS-B, 99.3 2.1E-11 7.2E-16 88.7 9.2 82 302-388 15-100 (121)
374 3tht_A Alkylated DNA repair pr 99.2 1.5E-11 5.2E-16 107.3 8.8 79 17-101 12-97 (345)
375 1ufw_A Synaptojanin 2; RNP dom 99.2 2.5E-11 8.6E-16 82.6 6.4 76 300-383 10-94 (95)
376 1owx_A Lupus LA protein, SS-B, 99.1 2.1E-10 7.2E-15 83.5 8.8 78 18-101 13-94 (121)
377 2dnr_A Synaptojanin-1; RRM dom 99.1 2.7E-10 9.3E-15 77.2 6.5 75 20-103 4-86 (91)
378 3dxb_A Thioredoxin N-terminall 99.0 5.4E-10 1.8E-14 93.1 7.0 68 317-384 141-213 (222)
379 2l9w_A U4/U6 snRNA-associated- 99.0 4.9E-09 1.7E-13 72.6 9.2 85 302-391 18-107 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.9 2.4E-09 8.3E-14 72.9 4.6 75 18-101 10-93 (95)
381 3dxb_A Thioredoxin N-terminall 98.7 3.6E-08 1.2E-12 82.0 9.1 82 22-103 123-213 (222)
382 2dhx_A Poly (ADP-ribose) polym 98.7 2.9E-07 9.9E-12 63.4 10.8 89 21-124 6-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.5 4.8E-07 1.6E-11 62.7 7.3 72 21-98 19-95 (117)
384 1wey_A Calcipressin 1; structu 98.2 5.7E-06 2E-10 57.4 7.1 76 304-384 4-84 (104)
385 1wey_A Calcipressin 1; structu 98.1 4.6E-06 1.6E-10 57.8 5.6 74 23-102 5-83 (104)
386 1uw4_A UPF3X; nonsense mediate 97.9 4.8E-05 1.6E-09 52.0 7.4 69 24-92 2-72 (91)
387 1whv_A Poly(A)-specific ribonu 97.8 8.5E-05 2.9E-09 50.5 7.1 57 304-367 14-70 (100)
388 1whv_A Poly(A)-specific ribonu 97.8 0.00016 5.3E-09 49.2 8.3 61 16-85 9-69 (100)
389 2dhx_A Poly (ADP-ribose) polym 97.8 0.00012 3.9E-09 50.6 7.5 77 304-388 7-88 (104)
390 1wwh_A Nucleoporin 35, nucleop 97.7 0.00011 3.6E-09 52.7 7.4 76 17-100 18-94 (119)
391 1uw4_A UPF3X; nonsense mediate 97.6 0.00053 1.8E-08 46.8 8.6 67 306-372 2-71 (91)
392 1wwh_A Nucleoporin 35, nucleop 97.4 0.00073 2.5E-08 48.3 7.8 71 303-380 22-93 (119)
393 3ctr_A Poly(A)-specific ribonu 97.3 0.00041 1.4E-08 47.4 5.2 53 307-367 8-60 (101)
394 3ctr_A Poly(A)-specific ribonu 97.2 0.00044 1.5E-08 47.2 4.7 54 24-86 7-60 (101)
395 2l08_A Regulator of nonsense t 97.1 0.00048 1.6E-08 47.2 3.7 73 20-92 6-80 (97)
396 2l08_A Regulator of nonsense t 96.9 0.004 1.4E-07 42.7 7.4 77 305-381 9-93 (97)
397 3p3d_A Nucleoporin 53; structu 96.9 0.00068 2.3E-08 49.2 3.3 79 21-101 5-97 (132)
398 3pq1_A Poly(A) RNA polymerase; 96.6 0.00096 3.3E-08 60.4 3.1 58 21-84 51-108 (464)
399 3p3d_A Nucleoporin 53; structu 96.2 0.0096 3.3E-07 43.2 5.8 75 306-382 8-97 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.9 0.0051 1.7E-07 55.7 3.9 55 305-364 53-107 (464)
401 3d45_A Poly(A)-specific ribonu 90.7 1 3.5E-05 41.7 9.0 56 22-86 439-494 (507)
402 3d45_A Poly(A)-specific ribonu 88.1 1.3 4.6E-05 40.9 7.7 53 308-367 442-494 (507)
403 2g0c_A ATP-dependent RNA helic 81.6 1.9 6.5E-05 28.0 4.0 59 316-382 12-75 (76)
404 4eyt_A Telomerase associated p 68.1 23 0.00078 23.3 8.6 57 111-174 12-68 (129)
405 4e8u_A Putative uncharacterize 59.4 25 0.00086 26.8 6.1 49 306-356 13-72 (172)
406 2g0c_A ATP-dependent RNA helic 57.8 34 0.0011 21.8 6.5 57 35-100 13-74 (76)
407 4eyt_A Telomerase associated p 48.6 55 0.0019 21.5 8.7 70 20-99 9-78 (129)
408 3j21_T 50S ribosomal protein L 43.2 55 0.0019 21.7 5.0 51 312-364 29-81 (86)
409 4e8u_A Putative uncharacterize 33.4 94 0.0032 23.7 5.6 48 25-75 14-72 (172)
410 2v94_A RPS24, 30S ribosomal pr 31.2 1.3E+02 0.0045 20.8 5.6 47 34-81 38-89 (107)
411 1ywx_A 30S ribosomal protein S 31.0 1.3E+02 0.0044 20.7 5.9 47 33-80 28-79 (102)
412 2i9x_A Putative septation prot 30.3 59 0.002 21.6 3.6 25 331-355 5-30 (87)
413 1xn9_A 30S ribosomal protein S 29.3 1.4E+02 0.0047 20.5 6.1 50 33-83 28-82 (101)
414 4bby_A Alkyldihydroxyacetoneph 28.8 47 0.0016 31.9 4.1 54 313-366 351-408 (658)
415 2ia9_A Putative septation prot 27.3 69 0.0024 21.9 3.6 25 331-355 5-30 (100)
416 3fry_A Probable copper-exporti 26.6 1.1E+02 0.0039 18.6 5.8 55 306-366 7-61 (73)
417 2i9z_A Putative septation prot 25.8 77 0.0026 21.9 3.6 25 331-355 5-30 (105)
418 4ar0_A Type IV pilus biogenesi 25.4 38 0.0013 24.5 2.2 61 320-382 41-105 (128)
419 2rf4_B DNA-directed RNA polyme 25.0 61 0.0021 21.3 2.8 31 17-47 13-43 (87)
420 1wvf_A 4-cresol dehydrogenase 24.7 45 0.0015 30.9 3.1 43 321-363 217-261 (520)
421 2yua_A Williams-beuren syndrom 23.1 35 0.0012 23.2 1.5 22 26-47 20-41 (99)
422 2cu1_A Mitogen-activated prote 22.9 1.5E+02 0.005 20.2 4.4 67 310-384 21-88 (103)
423 3fut_A Dimethyladenosine trans 21.4 81 0.0028 26.2 3.8 28 23-51 110-137 (271)
424 3u5e_X 60S ribosomal protein L 20.8 1.6E+02 0.0055 21.6 4.7 50 313-364 86-137 (142)
425 2xzm_P RPS24E; ribosome, trans 20.3 2.3E+02 0.0079 20.9 5.4 47 34-81 32-83 (149)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3.8e-46 Score=326.51 Aligned_cols=256 Identities=21% Similarity=0.325 Sum_probs=229.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
.++++|||+|||+++|+++|+++|+.|| |.++.+ +.++|+|||+|.+.++|.+|+..+++..+.|+.+.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 4679999999999999999999999999 988887 345679999999999999999999999999999999986
Q ss_pred cCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhcCCccCC
Q 015870 101 HRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179 (399)
Q Consensus 101 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~ 179 (399)
.. ..+|+|+|||+++++++|.++|+.||.|..+.+..+ .++.++|+|||+|.+.++|..|+..|++..+.|
T Consensus 93 ~~--------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 93 PT--------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp CC--------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CC--------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 53 367999999999999999999999999999999887 578899999999999999999999999999999
Q ss_pred ceeeeecccccccchhhcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHH
Q 015870 180 KQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259 (399)
Q Consensus 180 ~~~~v~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a 259 (399)
+.+.+.+..+.....
T Consensus 165 ~~i~v~~a~~~~~~~----------------------------------------------------------------- 179 (284)
T 3smz_A 165 RTLYVHWTDAGQLTP----------------------------------------------------------------- 179 (284)
T ss_dssp EECEEEECCGGGCCT-----------------------------------------------------------------
T ss_pred cEEEEEECCCCCCCc-----------------------------------------------------------------
Confidence 999998764321100
Q ss_pred HHHhCCCccCCceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcC-CHHHHHHhhcCcCCceEEEEe
Q 015870 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI-DDEKLKQLFSPFGSITSCKVM 338 (399)
Q Consensus 260 ~~~l~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~dl~~~f~~~G~v~~v~~~ 338 (399)
...+.++|+|+|||+.+ ++++|+++|++||.|.+++++
T Consensus 180 -----------------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~ 218 (284)
T 3smz_A 180 -----------------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLA 218 (284)
T ss_dssp -----------------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEE
T ss_pred -----------------------------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEE
Confidence 00346789999999995 999999999999999999999
Q ss_pred eCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecHHHHHHhhhhhhc
Q 015870 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVCLLQ 397 (399)
Q Consensus 339 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~ 397 (399)
.+.+|+++|+|||+|.+.++|.+|+..|||..++|++|+|+|++++..++.+.+.+...
T Consensus 219 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~aa 277 (284)
T 3smz_A 219 CGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAA 277 (284)
T ss_dssp ECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHHHH
T ss_pred ECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhhHH
Confidence 99999999999999999999999999999999999999999999999888777665543
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.4e-45 Score=322.77 Aligned_cols=254 Identities=20% Similarity=0.368 Sum_probs=214.6
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
.+..++++++|||+|||+++|+++|+++|+.||+|.+|.++.+..+ ++|+|||+|.+.++|.+|+. +++..+.|+.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEE
Confidence 3455888999999999999999999999999999999999987543 47999999999999999996 89999999999
Q ss_pred EEeeccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccC-CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcC
Q 015870 96 RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG-NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174 (399)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~ 174 (399)
.|.++. .++|+|+|||+.+++++|.++|+.|| .|..+.+..+..+.++|+|||+|.+.++|..|+..|++
T Consensus 111 ~v~~~~---------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 181 (292)
T 2ghp_A 111 IVSHLT---------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG 181 (292)
T ss_dssp EEEECC---------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT
T ss_pred EEEECC---------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 998863 57899999999999999999999999 99999999887788899999999999999999999999
Q ss_pred CccCCceeeeecccccccchhhcccCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHH
Q 015870 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254 (399)
Q Consensus 175 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~ 254 (399)
..+.|+.+.+.+..+.......
T Consensus 182 ~~~~g~~l~v~~a~~~~~~~~~---------------------------------------------------------- 203 (292)
T 2ghp_A 182 LKIEGYTLVTKVSNPLEKSKRT---------------------------------------------------------- 203 (292)
T ss_dssp CEETTEECEEEECCCC----------------------------------------------------------------
T ss_pred CEeCCcEEEEEECCCCcccccc----------------------------------------------------------
Confidence 9999999999776432211100
Q ss_pred HHHHHHHHhCCCccCCceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCc-CCHHHHHHhhcCcCCce
Q 015870 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS-IDDEKLKQLFSPFGSIT 333 (399)
Q Consensus 255 ~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~dl~~~f~~~G~v~ 333 (399)
.....+.++|+|+|||+. +++++|+++|++||.|.
T Consensus 204 --------------------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~ 239 (292)
T 2ghp_A 204 --------------------------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIE 239 (292)
T ss_dssp -----------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEE
T ss_pred --------------------------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCee
Confidence 012345689999999999 99999999999999999
Q ss_pred EEEEeeCCC--CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeec
Q 015870 334 SCKVMRDPS--GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (399)
Q Consensus 334 ~v~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 384 (399)
+++++.+.+ |.++|+|||+|.+.++|.+|+ .|||..++|++|+|+||++|
T Consensus 240 ~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 240 KINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999877 999999999999999999999 99999999999999999986
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4.6e-34 Score=238.17 Aligned_cols=172 Identities=63% Similarity=1.083 Sum_probs=158.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
..+.++|||+|||+++|+++|+++|++||+|.+|.+++++.+++++|||||+|.+.++|.+|+..+++..+.|+.+++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC
Q 015870 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179 (399)
Q Consensus 100 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~ 179 (399)
+............+|+|+|||+++++++|+++|+.||.|..+.++.+.. .++|+|||+|.+.++|.+|++.|+|..+.|
T Consensus 92 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g 170 (213)
T 4f02_A 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLND 170 (213)
T ss_dssp CCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 9877666666778999999999999999999999999999999988753 469999999999999999999999999999
Q ss_pred ceeeeeccccccc
Q 015870 180 KQVYVGHFLRKQE 192 (399)
Q Consensus 180 ~~~~v~~~~~~~~ 192 (399)
+.|.|.+..++..
T Consensus 171 ~~i~V~~a~~~~~ 183 (213)
T 4f02_A 171 RKVFVGRFKSRKE 183 (213)
T ss_dssp EECEEEECCCHHH
T ss_pred EEEEEEEcCCCcc
Confidence 9999998766543
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=8.7e-33 Score=230.47 Aligned_cols=177 Identities=35% Similarity=0.516 Sum_probs=157.4
Q ss_pred CCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEecc
Q 015870 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278 (399)
Q Consensus 200 ~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~ 278 (399)
.+.++|||+|||+++++++|.++|++||.|..+.++.+ ..+.++|+|||+|.+.++|..|+..+++..+.|+.+.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34578999999999999999999999999999999987 56889999999999999999999999999999999999988
Q ss_pred ccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHH
Q 015870 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358 (399)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~ 358 (399)
........ ....+|+|+|||+.+++++|+++|++||.|.+++++.+.+ .++|||||+|.+.++
T Consensus 93 ~~~~~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 93 QRDPSLRK----------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEA 155 (213)
T ss_dssp CCCTHHHH----------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHH
T ss_pred cccccccc----------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHH
Confidence 76543322 1356899999999999999999999999999999988754 479999999999999
Q ss_pred HHHHHHHhcCceecCeeEEEEEeeecHHHHHHhhh
Q 015870 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQV 393 (399)
Q Consensus 359 A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~ 393 (399)
|.+|++.|||..|+|++|+|.+|+++.+++.+.+.
T Consensus 156 a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~~~~ 190 (213)
T 4f02_A 156 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 190 (213)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCHHHHHHHHC-
T ss_pred HHHHHHHhCCCEECCEEEEEEEcCCCcccchhhhc
Confidence 99999999999999999999999998877665443
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=215.87 Aligned_cols=164 Identities=26% Similarity=0.526 Sum_probs=154.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccCC
Q 015870 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (399)
++|||+|||+++|+++|+++|++||+|.++.++.++ .+.++|+|||+|.+.++|.+|+..+++..+.|+.+.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999886 4778999999999999999999999999999999999999887
Q ss_pred cccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhcCCccCCcee
Q 015870 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182 (399)
Q Consensus 104 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~ 182 (399)
.........+|+|+|||+.+++++|+++|+.||.|..+.+..+ ..+.++|+|||+|.+.++|..|+..|++..+.|+.|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 7777777889999999999999999999999999999999988 678899999999999999999999999999999999
Q ss_pred eeeccc
Q 015870 183 YVGHFL 188 (399)
Q Consensus 183 ~v~~~~ 188 (399)
.+.+..
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 998753
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=3.4e-32 Score=228.37 Aligned_cols=173 Identities=24% Similarity=0.435 Sum_probs=155.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
...+++|||+|||+++|+++|+++|++||.|.++.++.+..++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 56678999999999999999999999999999999999988899999999999999999999999999999999999988
Q ss_pred ccCCccc---------ccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHH
Q 015870 100 SHRDPSL---------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169 (399)
Q Consensus 100 ~~~~~~~---------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~ 169 (399)
+...... .....++|+|+|||.++++++|+++|+.||.|..+.+..+ .++.++|+|||+|.+.++|..|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp CSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHH
Confidence 7654321 2245678999999999999999999999999999999998 57888999999999999999999
Q ss_pred HHhcCCccCCceeeeeccccccc
Q 015870 170 EKLNGMLLNDKQVYVGHFLRKQE 192 (399)
Q Consensus 170 ~~l~~~~~~~~~~~v~~~~~~~~ 192 (399)
+.|++..+.|+.|.|.+..++..
T Consensus 185 ~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 185 SSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHccCCEeCCcEEEEEEecCCCC
Confidence 99999999999999998776543
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3e-31 Score=213.46 Aligned_cols=163 Identities=29% Similarity=0.560 Sum_probs=151.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeecc
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (399)
++++|||+|||+++++++|+++|++||+|.++.++.++.+|.++|+|||+|.+.++|.+|+..+++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhcCCccCC-
Q 015870 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLND- 179 (399)
Q Consensus 102 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~- 179 (399)
.... .....+|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|..|++.|++..+.|
T Consensus 82 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 82 PGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp CCSS--TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 5433 3456789999999999999999999999999999999985 78899999999999999999999999999977
Q ss_pred -ceeeeec
Q 015870 180 -KQVYVGH 186 (399)
Q Consensus 180 -~~~~v~~ 186 (399)
+.|.|.+
T Consensus 160 ~~~l~V~~ 167 (168)
T 1b7f_A 160 SQPLSVRL 167 (168)
T ss_dssp SSCCEEEE
T ss_pred CeEEEEEe
Confidence 8887765
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.9e-31 Score=212.39 Aligned_cols=165 Identities=32% Similarity=0.519 Sum_probs=151.8
Q ss_pred ceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccch
Q 015870 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282 (399)
Q Consensus 203 ~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~ 282 (399)
++|+|+|||+++++++|.++|+.||.|..+.+..+..+.++|+|||+|.+.++|..|+..+++..+.|+.+.+.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 46999999999999999999999999999999988878899999999999999999999999999999999999886543
Q ss_pred HHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeC-CCCCcccEEEEEeCCHHHHHH
Q 015870 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASR 361 (399)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~-~~~~~~g~afV~f~~~~~A~~ 361 (399)
. ....+.++|+|+|||..+++++|+++|++||.|.++++..+ .+|.++|+|||+|.+.++|.+
T Consensus 81 ~----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 81 Q----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp C----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred C----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 2 13446789999999999999999999999999999999887 478899999999999999999
Q ss_pred HHHHhcCceecCeeEEEEEeee
Q 015870 362 ALLEMNGKMVVSKPLYVALAQR 383 (399)
Q Consensus 362 A~~~l~~~~~~g~~l~v~~a~~ 383 (399)
|+..|||..++|++|+|+||++
T Consensus 145 A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 145 AMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHTTCEETTEECEEEESCC
T ss_pred HHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999973
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=8.1e-31 Score=210.79 Aligned_cols=162 Identities=33% Similarity=0.596 Sum_probs=149.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeecc
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (399)
++++|||+|||+++++++|+++|++||+|.++.++.++.+|.++|+|||+|.+.++|.+|+..+++..+.|+.+.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhcCCccCCc
Q 015870 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180 (399)
Q Consensus 102 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~ 180 (399)
+... .....+|+|+|||+.+++++|+++|+.||.|..+.+..+ .++.++|+|||+|.+.++|..|++.|+|..+.|+
T Consensus 81 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 81 PSSA--SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCCG--GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 5533 344678999999999999999999999999999999988 4788899999999999999999999999999997
Q ss_pred e--eeee
Q 015870 181 Q--VYVG 185 (399)
Q Consensus 181 ~--~~v~ 185 (399)
. +.+.
T Consensus 159 ~~~i~v~ 165 (167)
T 1fxl_A 159 TEPITVK 165 (167)
T ss_dssp SSCCEEE
T ss_pred ccceEEE
Confidence 6 4444
No 10
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.98 E-value=4.5e-31 Score=218.03 Aligned_cols=178 Identities=25% Similarity=0.427 Sum_probs=152.8
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 015870 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (399)
Q Consensus 14 ~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~ 93 (399)
...+.++.+.++|||+|||+++|+++|+++|++||.|.++.++.+..+|.++|||||+|.+.++|.+|+.. ++..+.|+
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~ 82 (196)
T 1l3k_A 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR 82 (196)
T ss_dssp ----CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE
T ss_pred ccCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCE
Confidence 34567788999999999999999999999999999999999999988999999999999999999999985 88899999
Q ss_pred ccEEeeccCCcccc----cCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHH
Q 015870 94 PIRVMYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168 (399)
Q Consensus 94 ~i~v~~~~~~~~~~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a 168 (399)
.|.|.++....... ....++|+|+|||+++++++|+++|+.||.|..+.+..+ .++.++|+|||+|.+.++|..|
T Consensus 83 ~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 83 VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp ECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred EeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH
Confidence 99999986543222 234578999999999999999999999999999999998 4788999999999999999999
Q ss_pred HHHhcCCccCCceeeeecccccccc
Q 015870 169 IEKLNGMLLNDKQVYVGHFLRKQER 193 (399)
Q Consensus 169 ~~~l~~~~~~~~~~~v~~~~~~~~~ 193 (399)
+.. ++..+.|+.|.|.+..++...
T Consensus 163 ~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 163 VIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHC-SCCEETTEECEEEECC-----
T ss_pred HHh-CCcEECCEEEEEEecCChhHh
Confidence 985 799999999999988766543
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=2.1e-30 Score=213.99 Aligned_cols=182 Identities=23% Similarity=0.439 Sum_probs=148.5
Q ss_pred cCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEec
Q 015870 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277 (399)
Q Consensus 199 ~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~ 277 (399)
.....+|||+|||+.+++++|.++|+.||.|..+.+..+ ..+.++|+|||+|.+.++|..|+.. ++..+.|+.|.+.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 345688999999999999999999999999999999887 4578999999999999999999975 88999999999999
Q ss_pred cccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCH
Q 015870 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTP 356 (399)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~ 356 (399)
+.+...... .....+.++|+|+|||+.+++++|+++|++||.|.+++++.+. +|.++|||||+|.+.
T Consensus 89 ~~~~~~~~~------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 89 AVSREDSQR------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CCC-----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ccCcccccc------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 876533221 1123466899999999999999999999999999999998886 788999999999999
Q ss_pred HHHHHHHHHhcCceecCeeEEEEEeeecHHHHHHhhhh
Q 015870 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQVC 394 (399)
Q Consensus 357 ~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~ 394 (399)
++|.+|+.. ++..++|+.|.|.+|.++.+.+...+..
T Consensus 157 ~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~~~~~~ 193 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASASSSQ 193 (196)
T ss_dssp HHHHHHHHC-SCCEETTEECEEEECC------------
T ss_pred HHHHHHHHh-CCcEECCEEEEEEecCChhHhccccccc
Confidence 999999976 8999999999999999999887665543
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=4e-30 Score=208.37 Aligned_cols=165 Identities=25% Similarity=0.411 Sum_probs=146.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCC--CcccEEEEEeCCHHHHHHHHHHhCCCCCC---CcccE
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSNAQEAARALEMLNFTPLN---GKPIR 96 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~--~~~g~a~V~f~~~~~A~~a~~~l~~~~~~---g~~i~ 96 (399)
++++|||+|||+++|+++|+++|++||+|.++.++.+..++ .++|||||+|.+.++|++|+..+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998776 89999999999999999999999987765 57777
Q ss_pred EeeccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCc
Q 015870 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (399)
Q Consensus 97 v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 176 (399)
+.++..... .....++|+|+|||+++++++|+++|+.||.|..+.+..+..+.++|+|||+|.+.++|.+|++.|++..
T Consensus 82 ~~~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 82 MKPADSEKN-NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEECGGGCC-SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred Ecccccccc-ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 777654332 2335678999999999999999999999999999999999889999999999999999999999999976
Q ss_pred cC---Cceeeeecc
Q 015870 177 LN---DKQVYVGHF 187 (399)
Q Consensus 177 ~~---~~~~~v~~~ 187 (399)
+. ++.|.|.+.
T Consensus 161 ~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 161 TMEGCSSPMVVKFA 174 (175)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCCCCeEEEec
Confidence 65 388888764
No 13
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=2.4e-30 Score=208.20 Aligned_cols=163 Identities=34% Similarity=0.569 Sum_probs=150.8
Q ss_pred CcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccc
Q 015870 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (399)
Q Consensus 201 ~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~ 279 (399)
+.++|+|+|||+.+++++|.++|+.||.|..+.+..+ ..+.++|+|||+|.+.++|..|+..+++..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3578999999999999999999999999999998877 567889999999999999999999999999999999999987
Q ss_pred cchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHH
Q 015870 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358 (399)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~ 358 (399)
+... ..+.++|+|+|||..+++++|+++|++||.|.+++++.+. +|.++|+|||+|.+.++
T Consensus 82 ~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 143 (168)
T 1b7f_A 82 PGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 143 (168)
T ss_dssp CCSS------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred CCcc------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence 5432 2456899999999999999999999999999999998887 88899999999999999
Q ss_pred HHHHHHHhcCceecC--eeEEEEEe
Q 015870 359 ASRALLEMNGKMVVS--KPLYVALA 381 (399)
Q Consensus 359 A~~A~~~l~~~~~~g--~~l~v~~a 381 (399)
|.+|+..|||..+.| ++|+|+||
T Consensus 144 A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 144 AQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999988 99999987
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=7.7e-30 Score=205.05 Aligned_cols=162 Identities=35% Similarity=0.609 Sum_probs=149.6
Q ss_pred cceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECC-CCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEecccc
Q 015870 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (399)
Q Consensus 202 ~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~ 280 (399)
.++|+|+|||+.+++++|.++|+.||.|..+.+..+. .+.++|+|||+|.+.++|..|+..+++..+.|+.+.+.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4789999999999999999999999999999999885 788999999999999999999999999999999999999875
Q ss_pred chHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHH
Q 015870 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEA 359 (399)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A 359 (399)
... ....++|+|+|||..+++++|+++|++||.|.++++..+. +|.++|+|||+|.+.++|
T Consensus 82 ~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 82 SSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCG------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Ccc------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 432 2356789999999999999999999999999999998876 788999999999999999
Q ss_pred HHHHHHhcCceecCee--EEEEEe
Q 015870 360 SRALLEMNGKMVVSKP--LYVALA 381 (399)
Q Consensus 360 ~~A~~~l~~~~~~g~~--l~v~~a 381 (399)
.+|+..|||..++|+. |+|+||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999975 888886
No 15
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=6.9e-30 Score=214.30 Aligned_cols=181 Identities=24% Similarity=0.406 Sum_probs=156.8
Q ss_pred CCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECC-CCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEecc
Q 015870 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278 (399)
Q Consensus 200 ~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~ 278 (399)
....+|||+|||+.+++++|.++|+.||.|..+.+..+. .+.++|+|||+|.+.++|..|+..+++..+.|+.|.+.+.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 345789999999999999999999999999999998773 6788999999999999999999999999999999999887
Q ss_pred ccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHH
Q 015870 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357 (399)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~ 357 (399)
............ ........++|+|+|||..+++++|+++|++||.|.++++..+. +|+++|+|||+|.+.+
T Consensus 106 ~~~~~~~~~~~~-------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 106 SNIGQAQPIIDQ-------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp SCCGGGHHHHHH-------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCccccchhhhh-------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 665543222111 11234567899999999999999999999999999999998885 7889999999999999
Q ss_pred HHHHHHHHhcCceecCeeEEEEEeeecHHH
Q 015870 358 EASRALLEMNGKMVVSKPLYVALAQRKEDR 387 (399)
Q Consensus 358 ~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 387 (399)
+|.+|+..|||..|+|+.|+|.||+++...
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 999999999999999999999999987543
No 16
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.6e-29 Score=204.78 Aligned_cols=165 Identities=28% Similarity=0.506 Sum_probs=146.5
Q ss_pred CcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCC---CeeeEEEEEeCCHHHHHHHHHHhCCCccC---CceeE
Q 015870 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG---KSKCFGFVNFENSDDAARAVEALNGKKFD---DKEWY 274 (399)
Q Consensus 201 ~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~g~~~v~f~~~~~a~~a~~~l~g~~~~---~~~l~ 274 (399)
...+|||+|||+++++++|.++|+.||.|..+.+..+..+ .++|+|||+|.+.++|..|+..+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4578999999999999999999999999999999888554 78999999999999999999999998765 56777
Q ss_pred EeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeC
Q 015870 275 VGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354 (399)
Q Consensus 275 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~ 354 (399)
+.++.+... .....++|+|+|||+.+++++|+++|++||.|.+++++++.+|.++|+|||+|.
T Consensus 82 ~~~~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~ 144 (175)
T 3nmr_A 82 MKPADSEKN-----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFT 144 (175)
T ss_dssp EEECGGGCC-----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEES
T ss_pred Ecccccccc-----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEEC
Confidence 766643221 223567999999999999999999999999999999999989999999999999
Q ss_pred CHHHHHHHHHHhcCceec---CeeEEEEEee
Q 015870 355 TPEEASRALLEMNGKMVV---SKPLYVALAQ 382 (399)
Q Consensus 355 ~~~~A~~A~~~l~~~~~~---g~~l~v~~a~ 382 (399)
+.++|.+|+..|||..+. |++|+|+||.
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999998775 4999999983
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.1e-30 Score=209.90 Aligned_cols=165 Identities=22% Similarity=0.478 Sum_probs=149.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
+++++|||+|||+++|+++|+++|++||.|.++.++.+..+|.++|||||+|.+.++|.+|+.. +..+.|+.+.+.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999999988999999999999999999999984 56789999999887
Q ss_pred cCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhcCCccCC
Q 015870 101 HRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179 (399)
Q Consensus 101 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~ 179 (399)
..... ....++|+|+|||+++++++|+++|+.||.|..+.+..+ .++.++|+|||+|.+.++|.+|++ +++..+.|
T Consensus 79 ~~~~~--~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 79 IPRDE--QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CCHHH--HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred cchhh--ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 64322 233568999999999999999999999999999999888 468899999999999999999998 89999999
Q ss_pred ceeeeeccccc
Q 015870 180 KQVYVGHFLRK 190 (399)
Q Consensus 180 ~~~~v~~~~~~ 190 (399)
+.|.|.+..++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999887543
No 18
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=4.9e-30 Score=206.09 Aligned_cols=163 Identities=25% Similarity=0.490 Sum_probs=147.6
Q ss_pred CcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEEC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccc
Q 015870 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (399)
Q Consensus 201 ~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~ 279 (399)
++.+|+|+|||+++++++|.++|+.||.|..+.+..+ ..+.++|+|||+|.+.++|..|+.. +..+.|+.+.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 3578999999999999999999999999999999887 5688999999999999999999984 678999999998876
Q ss_pred cchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHH
Q 015870 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358 (399)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~ 358 (399)
+.... .+.++|+|+|||+.+++++|+++|++||.|.++++..+. +|.++|+|||+|.+.++
T Consensus 80 ~~~~~------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 141 (167)
T 2cjk_A 80 PRDEQ------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 141 (167)
T ss_dssp CHHHH------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred chhhc------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 54321 135789999999999999999999999999999998875 78999999999999999
Q ss_pred HHHHHHHhcCceecCeeEEEEEeeec
Q 015870 359 ASRALLEMNGKMVVSKPLYVALAQRK 384 (399)
Q Consensus 359 A~~A~~~l~~~~~~g~~l~v~~a~~~ 384 (399)
|.+|++ +++..++|++|+|.||+||
T Consensus 142 a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 142 VDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999997 8999999999999999986
No 19
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.3e-30 Score=211.18 Aligned_cols=168 Identities=23% Similarity=0.343 Sum_probs=149.1
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
...+.+.++|||+|||.++++++|+++|.+||.+.. .++.+..++.++|||||+|.+.++|.+|+. |++..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 84 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 84 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEE
Confidence 356788999999999999999999999999987666 334444678889999999999999999995 999999999999
Q ss_pred EeeccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCc
Q 015870 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (399)
Q Consensus 97 v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~ 176 (399)
|.++...........++|+|+|||+++++++|+++|+.||.|..+ ...+.++|+|||+|.+.++|..|+..|++..
T Consensus 85 v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 1fje_B 85 LEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 160 (175)
T ss_dssp EECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEE
T ss_pred EecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 999987766666677899999999999999999999999988765 5567889999999999999999999999999
Q ss_pred cCCceeeeeccccc
Q 015870 177 LNDKQVYVGHFLRK 190 (399)
Q Consensus 177 ~~~~~~~v~~~~~~ 190 (399)
+.|+.|.+.+..++
T Consensus 161 ~~g~~i~v~~a~~k 174 (175)
T 1fje_B 161 IDGRSVSLYYTGEK 174 (175)
T ss_dssp ETTEEEEEEECSSC
T ss_pred ECCeEEEEEecCCC
Confidence 99999999887543
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.4e-28 Score=215.03 Aligned_cols=173 Identities=22% Similarity=0.322 Sum_probs=159.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
+..++|+|+|||+++++++|+++|++||.|.++.++.+..+|.++|+|||+|.+.++|.+|+..+++..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCCccc-ccCCCceEEEcCCCccc-CHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC
Q 015870 101 HRDPSL-RKSGAGNIFIKNLDKAI-DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178 (399)
Q Consensus 101 ~~~~~~-~~~~~~~l~v~nlp~~~-t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~ 178 (399)
...... .....++|+|+|||+.+ ++++|+++|+.||.|..+.+..+.++.++|+|||+|.+.++|..|+..|+|..+.
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 765432 23456789999999995 9999999999999999999999988999999999999999999999999999999
Q ss_pred Cceeeeecccccccc
Q 015870 179 DKQVYVGHFLRKQER 193 (399)
Q Consensus 179 ~~~~~v~~~~~~~~~ 193 (399)
|+.|.+.+..+....
T Consensus 253 g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 253 GSHLRVSFCAPGPPG 267 (284)
T ss_dssp TEECEEEECCSSSCH
T ss_pred CeEEEEEEecCCCcc
Confidence 999999998766543
No 21
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=1.5e-28 Score=198.36 Aligned_cols=158 Identities=25% Similarity=0.525 Sum_probs=142.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhcc----C-------CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~----g-------~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~ 89 (399)
+++++|||+|||+++|+++|+++|++| | +|.++.+.. ++|+|||+|.+.++|.+|+ .+++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 578999999999999999999999999 6 777776653 3579999999999999999 799999
Q ss_pred CCCcccEEeeccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHH
Q 015870 90 LNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168 (399)
Q Consensus 90 ~~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a 168 (399)
+.|+.+.|.++..... .....+|+|+|||+.+++++|+++|+.||.|..+.+..+ .++.++|+|||+|.+.++|.+|
T Consensus 75 ~~g~~i~v~~~~~~~~--~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQP--LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp ETTEECEEECCSSCCC--CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHH
T ss_pred ecCceeeecCCcccCC--CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 9999999998765432 244678999999999999999999999999999999999 4788999999999999999999
Q ss_pred HHHhcCCccCCceeeeecc
Q 015870 169 IEKLNGMLLNDKQVYVGHF 187 (399)
Q Consensus 169 ~~~l~~~~~~~~~~~v~~~ 187 (399)
++.|++..+.|+.+.+.++
T Consensus 153 ~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 153 IAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHTTCEETTEECEEEEC
T ss_pred HHHcCCCEECCeEEEEEeC
Confidence 9999999999999999865
No 22
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=1.3e-29 Score=205.25 Aligned_cols=165 Identities=22% Similarity=0.368 Sum_probs=143.7
Q ss_pred cCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEecc
Q 015870 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278 (399)
Q Consensus 199 ~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~ 278 (399)
.....+|||+|||+.+++++|.++|..||.+..+.+.....+.++|+|||+|.+.++|..|+ .+++..+.|+.|.+.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecC
Confidence 44568899999999999999999999998765533334445677899999999999999999 59999999999999998
Q ss_pred ccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHH
Q 015870 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358 (399)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~ 358 (399)
.+... ....+.++|+|+|||+.+++++|+++|++||.|..+ ..++.++|+|||+|.+.++
T Consensus 89 ~~~~~----------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~ 148 (175)
T 1fje_B 89 KGRDS----------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEAD 148 (175)
T ss_dssp CCSSC----------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHH
T ss_pred CCccc----------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHH
Confidence 76432 122356899999999999999999999999988766 5678899999999999999
Q ss_pred HHHHHHHhcCceecCeeEEEEEeeec
Q 015870 359 ASRALLEMNGKMVVSKPLYVALAQRK 384 (399)
Q Consensus 359 A~~A~~~l~~~~~~g~~l~v~~a~~~ 384 (399)
|.+|+..|||..++|+.|+|+||++|
T Consensus 149 A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 149 AEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999986
No 23
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=3.1e-28 Score=205.23 Aligned_cols=164 Identities=23% Similarity=0.317 Sum_probs=144.1
Q ss_pred CCCCCCccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 17 NANQFGTTSLYVGDLEA-NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~-~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
+....++++|||+|||+ ++++++|+++|++||.|.++.++.++ +|||||+|.+.++|.+|+..|++..+.|+.|
T Consensus 28 ~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 28 GLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp GGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34466789999999999 99999999999999999999998874 4799999999999999999999999999999
Q ss_pred EEeeccCCccc---------------------------------ccCCCceEEEcCCCcccCHHHHHHHhcccC-CeEEE
Q 015870 96 RVMYSHRDPSL---------------------------------RKSGAGNIFIKNLDKAIDHKALHDTFSAFG-NILSC 141 (399)
Q Consensus 96 ~v~~~~~~~~~---------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~~ 141 (399)
.|.++...... .....++|+|+|||+.+++++|+++|+.|| .|..+
T Consensus 103 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v 182 (229)
T 2adc_A 103 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGF 182 (229)
T ss_dssp EEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEE
T ss_pred EEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEE
Confidence 99988643100 012257899999999999999999999999 99999
Q ss_pred EEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC-Cceeeeecccc
Q 015870 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVGHFLR 189 (399)
Q Consensus 142 ~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~-~~~~~v~~~~~ 189 (399)
.+... .+|+|||+|.+.++|..|++.|++..+. |+.|.+.+..+
T Consensus 183 ~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 183 KFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 88653 3689999999999999999999999999 99999988754
No 24
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=3.8e-28 Score=212.03 Aligned_cols=164 Identities=23% Similarity=0.427 Sum_probs=145.6
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~----~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
.++.+++++|||+|||+++++++|+ ++|++||.|.+|.+.+ ++.++|||||+|.+.++|.+|+..||+..+.|
T Consensus 3 ~~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 3 VPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 4567889999999999999999976 8999999999998875 67888999999999999999999999999999
Q ss_pred cccEEeeccCCcc-------------------------------------------------------------------
Q 015870 93 KPIRVMYSHRDPS------------------------------------------------------------------- 105 (399)
Q Consensus 93 ~~i~v~~~~~~~~------------------------------------------------------------------- 105 (399)
+.|+|.++.....
T Consensus 80 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 9999998764331
Q ss_pred ------------------------------------------cccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEE
Q 015870 106 ------------------------------------------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143 (399)
Q Consensus 106 ------------------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~ 143 (399)
......++|+|+|||..+++++|+++|+.||.|..+.+
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~ 239 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEE
Confidence 01123467999999999999999999999999999999
Q ss_pred eeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC-Cceeeeecc
Q 015870 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVGHF 187 (399)
Q Consensus 144 ~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~-~~~~~v~~~ 187 (399)
..+. +|+|||+|.+.++|..|++.|++..+. |+.|.|.+.
T Consensus 240 ~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 240 VPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred ecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 8652 589999999999999999999999998 999999875
No 25
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=1.3e-28 Score=198.74 Aligned_cols=157 Identities=24% Similarity=0.468 Sum_probs=141.8
Q ss_pred CcceEEeecCCcCccHHHHHHHhccc----C-------CeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccC
Q 015870 201 KFTNVYVKNLSESTTEEDLQKSFGEY----G-------TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD 269 (399)
Q Consensus 201 ~~~~l~i~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~ 269 (399)
+.++|+|+|||+++++++|.++|+.| | .+..+.+. .++|+|||+|.+.++|..|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 45789999999999999999999999 6 67777665 34689999999999999999 89999999
Q ss_pred CceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccE
Q 015870 270 DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGS 348 (399)
Q Consensus 270 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~ 348 (399)
|+.+.+.++..... ....++|+|+|||+.+++++|+++|++||.|.++++..+. +|.++|+
T Consensus 77 g~~i~v~~~~~~~~------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp TEECEEECCSSCCC------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred CceeeecCCcccCC------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 99999988654321 2246899999999999999999999999999999999885 8999999
Q ss_pred EEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 349 afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
|||+|.+.++|.+|+..|||..++|++|+|+||
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 999999999999999999999999999999997
No 26
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=1.6e-28 Score=202.03 Aligned_cols=155 Identities=17% Similarity=0.285 Sum_probs=134.7
Q ss_pred CCccEEEEcCCC-CCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 21 FGTTSLYVGDLE-ANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 21 ~~~~~l~v~nLP-~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
.++++|||+||| +++++++|+++|++||.|.+|.++.++ +|+|||+|.+.++|++|+..||+..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 899999999999999999999998653 47999999999999999999999999999999998
Q ss_pred ccCCccc--------------c---------------------cCCCceEEEcCCCcccCHHHHHHHhcccCCe--EEEE
Q 015870 100 SHRDPSL--------------R---------------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNI--LSCK 142 (399)
Q Consensus 100 ~~~~~~~--------------~---------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v--~~~~ 142 (399)
+...... . .....+|+|+|||+++|+++|+++|+.||.| ..+.
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 8532100 0 0124579999999999999999999999998 8888
Q ss_pred EeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCce
Q 015870 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181 (399)
Q Consensus 143 ~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~ 181 (399)
+..+. +..+|+|||+|.+.++|..|+..|++..+.|..
T Consensus 157 ~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 157 VFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp ECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred EEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 87765 445699999999999999999999999988763
No 27
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=5.5e-28 Score=199.83 Aligned_cols=164 Identities=24% Similarity=0.485 Sum_probs=143.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhcc----C-------CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~----g-------~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~ 89 (399)
+.+++|||+|||+++++++|+++|++| | .|.++.+. .++|||||+|.+.++|++|+ .|++..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 457999999999999999999999999 5 56666553 44679999999999999999 799999
Q ss_pred CCCcccEEeeccCCccc------------------ccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCC-CCC
Q 015870 90 LNGKPIRVMYSHRDPSL------------------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQ 150 (399)
Q Consensus 90 ~~g~~i~v~~~~~~~~~------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~ 150 (399)
+.|+.|.|.++...... .....++|+|+|||+.+++++|+++|+.||.|..+.+..+. .+.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~ 154 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 154 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC
Confidence 99999999987654211 12456899999999999999999999999999999999984 788
Q ss_pred ceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeecccccc
Q 015870 151 SKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191 (399)
Q Consensus 151 ~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~ 191 (399)
++|+|||+|.+.++|..|++.|++..+.|+.|.+.+..++.
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999999999876543
No 28
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=1.3e-27 Score=208.66 Aligned_cols=178 Identities=21% Similarity=0.375 Sum_probs=146.8
Q ss_pred cCCcceEEeecCCcCccHHHHH----HHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeE
Q 015870 199 KSKFTNVYVKNLSESTTEEDLQ----KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274 (399)
Q Consensus 199 ~~~~~~l~i~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~ 274 (399)
..+.++|||+|||+.+++++|+ ++|+.||.|..+.+.. .+.++|+|||+|.+.++|..|+..++|..+.|+.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 3456899999999999999966 8999999999998875 567889999999999999999999999999999999
Q ss_pred EeccccchHHHHHHHHHH------------------HHhh----------------------------------------
Q 015870 275 VGKAQKKSERELELKHQF------------------EQNM---------------------------------------- 296 (399)
Q Consensus 275 v~~~~~~~~~~~~~~~~~------------------~~~~---------------------------------------- 296 (399)
|.++.............. ....
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 998865443111000000 0000
Q ss_pred -----------------------------------HHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC
Q 015870 297 -----------------------------------KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341 (399)
Q Consensus 297 -----------------------------------~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~ 341 (399)
.......++++|||+|||..+++++|+++|++||.|.++++..+.
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 000122356889999999999999999999999999999998653
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhcCceec-CeeEEEEEee
Q 015870 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQ 382 (399)
Q Consensus 342 ~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~ 382 (399)
+|+|||+|.+.++|.+|+..|||..+. |+.|+|+|||
T Consensus 244 ----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 589999999999999999999999999 9999999997
No 29
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=7.4e-28 Score=199.04 Aligned_cols=179 Identities=21% Similarity=0.392 Sum_probs=146.1
Q ss_pred CcceEEeecCCcCccHHHHHHHhccc----C-------CeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccC
Q 015870 201 KFTNVYVKNLSESTTEEDLQKSFGEY----G-------TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD 269 (399)
Q Consensus 201 ~~~~l~i~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~ 269 (399)
.+++|||+|||+++++++|.++|+.| | .+..+.+. .++|+|||+|.+.++|..|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 35789999999999999999999999 5 56666553 45789999999999999999 89999999
Q ss_pred CceeEEeccccchHHHHHHHHH--HHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcc
Q 015870 270 DKEWYVGKAQKKSERELELKHQ--FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISR 346 (399)
Q Consensus 270 ~~~l~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~ 346 (399)
|+.|.+.++............. ............+.++|+|+|||+.+++++|+++|++||.|.++++..+. +|.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 9999999876532110000000 00000011122467899999999999999999999999999999999886 88899
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecH
Q 015870 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (399)
Q Consensus 347 g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 385 (399)
|+|||+|.+.++|.+|+..|||..++|+.|+|++|+++.
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 999999999999999999999999999999999999875
No 30
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=3e-28 Score=200.39 Aligned_cols=176 Identities=16% Similarity=0.197 Sum_probs=141.8
Q ss_pred CcceEEeecCC-cCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccc
Q 015870 201 KFTNVYVKNLS-ESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (399)
Q Consensus 201 ~~~~l~i~~l~-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~ 279 (399)
+..+|||+||| ..+++++|.++|+.||.|..+.++.+ .+|+|||+|.+.++|..|+..|+|..+.|+.|.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 45789999999 79999999999999999999998764 35789999999999999999999999999999999875
Q ss_pred cchHHHHH---H-H---------HH----HHHh--hHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCc--eEEEEe
Q 015870 280 KKSERELE---L-K---------HQ----FEQN--MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSI--TSCKVM 338 (399)
Q Consensus 280 ~~~~~~~~---~-~---------~~----~~~~--~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v--~~v~~~ 338 (399)
........ . . .. .... .......+++++|+|+|||+.+++++|+++|++||.| .++++.
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 32210000 0 0 00 0000 0000113567899999999999999999999999999 899988
Q ss_pred eCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe----eEEEEEe
Q 015870 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK----PLYVALA 381 (399)
Q Consensus 339 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~----~l~v~~a 381 (399)
.+. +.++|+|||+|.+.++|.+|+..|||..+.|+ ++.|.||
T Consensus 159 ~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 775 55579999999999999999999999999876 6777765
No 31
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=3e-27 Score=203.28 Aligned_cols=163 Identities=27% Similarity=0.485 Sum_probs=146.0
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcc
Q 015870 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (399)
Q Consensus 15 ~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~ 94 (399)
+......+.++|||+|||+++|+++|+++|++||.|.+|.+.++ +|+|||+|.+.++|.+|+..+++..+.|+.
T Consensus 14 p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 87 (261)
T 3sde_A 14 PGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRP 87 (261)
T ss_dssp TTCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence 34555678899999999999999999999999999999998643 479999999999999999999999999999
Q ss_pred cEEeeccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhc-
Q 015870 95 IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN- 173 (399)
Q Consensus 95 i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~- 173 (399)
|.|.++.. ..+|+|+|||+.+|+++|+++|+.||.|..+.+..+.++.++|+|||+|.+.++|..|+..|+
T Consensus 88 l~v~~a~~--------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 88 LRIRFATH--------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp CEEEECCC--------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eEeeeccc--------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 99999864 467999999999999999999999999999999999889999999999999999999999995
Q ss_pred CCccC---Cceeeeecccccc
Q 015870 174 GMLLN---DKQVYVGHFLRKQ 191 (399)
Q Consensus 174 ~~~~~---~~~~~v~~~~~~~ 191 (399)
+..+. ++.+.+.+.....
T Consensus 160 ~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 160 GAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp SCEESSSSCCBCEEEECCCEE
T ss_pred CeEEecCCCceEEEeeccccC
Confidence 44444 8888888776543
No 32
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=1.2e-27 Score=197.68 Aligned_cols=159 Identities=23% Similarity=0.336 Sum_probs=140.9
Q ss_pred CccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 22 GTTSLYVGDLEA-NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 22 ~~~~l~v~nLP~-~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
.+++|||+|||+ ++++++|+++|++||.|.++.++.++ +|+|||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998764 479999999999999999999999999999999988
Q ss_pred cCCccc---------------------------------ccCCCceEEEcCCCcccCHHHHHHHhcccC-CeEEEEEeeC
Q 015870 101 HRDPSL---------------------------------RKSGAGNIFIKNLDKAIDHKALHDTFSAFG-NILSCKVATD 146 (399)
Q Consensus 101 ~~~~~~---------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~~~~~~~ 146 (399)
...... .....++|+|+|||..+++++|+++|+.|| .|..+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 643100 012367899999999999999999999999 9999988654
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHhcCCccC-Cceeeeecccc
Q 015870 147 LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVGHFLR 189 (399)
Q Consensus 147 ~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~-~~~~~v~~~~~ 189 (399)
.+|+|||+|.+.++|..|+..|++..+. |+.+.+.+..+
T Consensus 157 ----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp ----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 3789999999999999999999999999 99999988654
No 33
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=7.5e-28 Score=211.25 Aligned_cols=169 Identities=21% Similarity=0.371 Sum_probs=146.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g-~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
..+.++|+|+|||+++++++|+++|++|| .|.++.++.+.. +.++|+|||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 114 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 114 HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34689999999999999999999999999 999999998864 7889999999999999999999999999999999999
Q ss_pred eccCCccc-----ccCCCceEEEcCCCcc-cCHHHHHHHhcccCCeEEEEEeeCCC--CCceeEEEEEecCHHHHHHHHH
Q 015870 99 YSHRDPSL-----RKSGAGNIFIKNLDKA-IDHKALHDTFSAFGNILSCKVATDLN--GQSKGYGFVQFDNEESAQKAIE 170 (399)
Q Consensus 99 ~~~~~~~~-----~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~g~v~~~~~~~~~~--~~~~g~a~v~f~~~~~a~~a~~ 170 (399)
++.+.... ......+|+|+|||+. +++++|+++|+.||.|..+.+..+.. +.++|+|||+|.+.++|..|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 98755432 2345688999999999 99999999999999999999998866 889999999999999999999
Q ss_pred HhcCCccCCceeeeeccccc
Q 015870 171 KLNGMLLNDKQVYVGHFLRK 190 (399)
Q Consensus 171 ~l~~~~~~~~~~~v~~~~~~ 190 (399)
.|++..+.|+.|.|.+..++
T Consensus 272 ~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp GGTTEEETTEEEEEEECCCC
T ss_pred HhcCCEECCcEEEEEEecCC
Confidence 99999999999999987653
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=2.9e-27 Score=203.38 Aligned_cols=158 Identities=30% Similarity=0.513 Sum_probs=144.9
Q ss_pred cCCcceEEeecCCcCccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEecc
Q 015870 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278 (399)
Q Consensus 199 ~~~~~~l~i~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~ 278 (399)
....++|||+|||+++++++|.++|+.||.|..+.+.. ++|+|||.|.+.++|..|+..++|..+.|+.|.+.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 44567899999999999999999999999999998863 4679999999999999999999999999999999988
Q ss_pred ccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHH
Q 015870 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358 (399)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~ 358 (399)
. ++.+|+|+|||+.+++++|+++|++||.|.+++++.+.+|+++|+|||+|.+.++
T Consensus 94 ~------------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 149 (261)
T 3sde_A 94 T------------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPP 149 (261)
T ss_dssp C------------------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHH
T ss_pred c------------------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHH
Confidence 6 3578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-Cceec---CeeEEEEEeeecH
Q 015870 359 ASRALLEMN-GKMVV---SKPLYVALAQRKE 385 (399)
Q Consensus 359 A~~A~~~l~-~~~~~---g~~l~v~~a~~~~ 385 (399)
|.+|+..|| +..+. |++|.|.++.+..
T Consensus 150 A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 150 ARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 999999995 55554 9999999998664
No 35
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=5e-28 Score=204.02 Aligned_cols=178 Identities=21% Similarity=0.293 Sum_probs=146.7
Q ss_pred cCCcceEEeecCCc-CccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEec
Q 015870 199 KSKFTNVYVKNLSE-STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277 (399)
Q Consensus 199 ~~~~~~l~i~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~ 277 (399)
..+..+|||+|||+ .+++++|.++|+.||.|..+.+..+. +|+|||+|.+.++|..|+..+++..+.|+.|.+.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45668999999999 99999999999999999999998764 56899999999999999999999999999999998
Q ss_pred cccchHHHHHHHHH-----------------HHHhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcC-CceEEEEee
Q 015870 278 AQKKSERELELKHQ-----------------FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMR 339 (399)
Q Consensus 278 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G-~v~~v~~~~ 339 (399)
+.+........... ...........+++++|+|+|||..+++++|+++|++|| .|.++++.+
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 86432110000000 000000011235678999999999999999999999999 999999865
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhcCceec-CeeEEEEEeeec
Q 015870 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQRK 384 (399)
Q Consensus 340 ~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~~~ 384 (399)
. .+|+|||+|.+.++|.+|+..|||..++ |++|+|+|++++
T Consensus 187 ~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 K----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp S----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred C----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3 3689999999999999999999999999 999999999864
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=5.7e-27 Score=193.51 Aligned_cols=175 Identities=22% Similarity=0.302 Sum_probs=143.9
Q ss_pred cceEEeecCCc-CccHHHHHHHhcccCCeeEEEEEECCCCCeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEecccc
Q 015870 202 FTNVYVKNLSE-STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (399)
Q Consensus 202 ~~~l~i~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~ 280 (399)
+++|+|+|||+ .+++++|.++|+.||.|..+.+..+. +|+|||+|.+.++|..|+..+++..+.|+.|.+.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 47899999999 99999999999999999999888654 56899999999999999999999999999999998764
Q ss_pred chHHHHHHHHHHH-----------------HhhHHhhhccCCceEEEecCCCcCCHHHHHHhhcCcC-CceEEEEeeCCC
Q 015870 281 KSERELELKHQFE-----------------QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDPS 342 (399)
Q Consensus 281 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G-~v~~v~~~~~~~ 342 (399)
............. .........+++++|+|+|||..+++++|+++|++|| .|.++++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--
Confidence 3211000000000 0000001124578999999999999999999999999 9999998664
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcCceec-CeeEEEEEeeec
Q 015870 343 GISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQRK 384 (399)
Q Consensus 343 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~~~ 384 (399)
.+|+|||+|.+.++|.+|+..|||..++ |++|+|.|++++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2689999999999999999999999999 999999999874
No 37
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=3.9e-22 Score=148.24 Aligned_cols=106 Identities=28% Similarity=0.504 Sum_probs=74.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
|..+++|||+|||+++++++|+++|++||.|.++.++.+. +.++|||||+|.+.++|++|+..|++..+.|+.|.|.+
T Consensus 2 P~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3457789999999999999999999999999999999984 45789999999999999999999999999999999999
Q ss_pred ccCCccc------ccCCCceEEEcCCCcccCHHH
Q 015870 100 SHRDPSL------RKSGAGNIFIKNLDKAIDHKA 127 (399)
Q Consensus 100 ~~~~~~~------~~~~~~~l~v~nlp~~~t~~~ 127 (399)
+...... ......+|||+|||+++|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 8654321 222345799999999998764
No 38
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=141.15 Aligned_cols=82 Identities=38% Similarity=0.641 Sum_probs=77.6
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
...+++|||+|||+.+++++|+++|++||.|.+++++++. +|+++|||||+|.+.++|.+|++.|||..++|++|+|+|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457889999999999999999999999999999998875 689999999999999999999999999999999999999
Q ss_pred eee
Q 015870 381 AQR 383 (399)
Q Consensus 381 a~~ 383 (399)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 987
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=2.9e-22 Score=158.57 Aligned_cols=143 Identities=20% Similarity=0.246 Sum_probs=109.0
Q ss_pred CeeeEEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHH
Q 015870 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320 (399)
Q Consensus 241 ~~~g~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 320 (399)
.++|++||+|.+.++|.+|+..+++....+..+.+........... ............+.++|||+|||+.++++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 85 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-----GSHHHHHHMDVEGMTSLKVDNLTYRTSPD 85 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-----CCCCSSCCCCCCBCCEEEEESCCTTCCHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-----cccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 5789999999999999999988775433333333322111000000 00000011123457899999999999999
Q ss_pred HHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecHHHH
Q 015870 321 KLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388 (399)
Q Consensus 321 dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 388 (399)
+|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|+..|||..++|++|+|.+|++++.+.
T Consensus 86 ~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 86 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp HHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred HHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 999999999999999998885 78999999999999999999999999999999999999999876543
No 40
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=4.8e-21 Score=140.46 Aligned_cols=91 Identities=14% Similarity=0.277 Sum_probs=83.6
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
.++.++|||+|||+.+++++|+++|++||.|.+++++.+. +++++|||||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3577899999999999999999999999999999999887 589999999999999999999999999999999999999
Q ss_pred eeecHHHHHHhh
Q 015870 381 AQRKEDRRARLQ 392 (399)
Q Consensus 381 a~~~~~~~~~~~ 392 (399)
|+.++.++...+
T Consensus 83 a~~~~~~~~~~~ 94 (110)
T 3s8s_A 83 DIKGQQRMKYYE 94 (110)
T ss_dssp CSTTHHHHHHHH
T ss_pred CCCCcHHHHHHH
Confidence 997776665443
No 41
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=6.6e-21 Score=137.06 Aligned_cols=83 Identities=40% Similarity=0.618 Sum_probs=78.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
...+++|||+|||+++|+++|+++|++||+|.++.+++++.+|.++|||||+|.+.++|.+|+..||+..+.|++|+|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 015870 100 SHR 102 (399)
Q Consensus 100 ~~~ 102 (399)
+.+
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 864
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=8e-22 Score=154.36 Aligned_cols=138 Identities=20% Similarity=0.313 Sum_probs=112.6
Q ss_pred CeeeEEEEEeCCHHHHHHHHHHh-CCCccCCceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCH
Q 015870 241 KSKCFGFVNFENSDDAARAVEAL-NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319 (399)
Q Consensus 241 ~~~g~~~v~f~~~~~a~~a~~~l-~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 319 (399)
..+|.++++|.+.++|.+|+..+ +|..++| .+.+.++........... ............+.++|||+|||+.+++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH--HHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS--SCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc--cccccccccCCCCCCEEEEeCCCCCCCH
Confidence 56788999999999999999999 9999999 999988754321100000 0000011123456789999999999999
Q ss_pred HHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecH
Q 015870 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (399)
Q Consensus 320 ~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 385 (399)
++|+++|++||.|.+++++.+ ++|||||+|.+.++|.+|+..|||..++|++|+|+|+++++
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999876 58999999999999999999999999999999999999864
No 43
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-21 Score=137.90 Aligned_cols=83 Identities=19% Similarity=0.353 Sum_probs=75.5
Q ss_pred CceEEEecCCCcCCHHHHHHhhcCcC-CceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHh-cCceecCeeEEEEEe
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEM-NGKMVVSKPLYVALA 381 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~~~G-~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l-~~~~~~g~~l~v~~a 381 (399)
+++|+|+|||+.++++||+++|++|| .|.+|+++++. +|.++|||||+|.+.++|.+|++.+ ++..++|++|+|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 79999998875 6899999999999999999999887 456899999999999
Q ss_pred eecHHH
Q 015870 382 QRKEDR 387 (399)
Q Consensus 382 ~~~~~~ 387 (399)
+++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 987643
No 44
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=132.32 Aligned_cols=92 Identities=25% Similarity=0.443 Sum_probs=84.3
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC
Q 015870 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (399)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~ 89 (399)
+.+++.++..+.+.++|||+|||+++++++|+++|++||+|.++.++.++.++.++|+|||+|.+.++|.+|+..|++..
T Consensus 3 ~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 82 (94)
T 2e5h_A 3 SGSSGMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQ 82 (94)
T ss_dssp CCCCCCCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEE
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCe
Confidence 34455556667889999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred CCCcccEEeecc
Q 015870 90 LNGKPIRVMYSH 101 (399)
Q Consensus 90 ~~g~~i~v~~~~ 101 (399)
+.|+.|+|.+++
T Consensus 83 ~~g~~l~v~~ak 94 (94)
T 2e5h_A 83 LFGRVIKASIAI 94 (94)
T ss_dssp ETTEEEEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999998863
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=132.53 Aligned_cols=82 Identities=20% Similarity=0.354 Sum_probs=75.2
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCC--ceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCc----eecCe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGS--ITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGK----MVVSK 374 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~--v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~----~~~g~ 374 (399)
.....+|||+|||+.+|+++|+++|++||. |.+|+++++. +|+++|||||+|.+.++|.+|++.|||. .++||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 346789999999999999999999999995 6799998876 6899999999999999999999999996 58999
Q ss_pred eEEEEEeee
Q 015870 375 PLYVALAQR 383 (399)
Q Consensus 375 ~l~v~~a~~ 383 (399)
+|.|+||++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999985
No 46
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=3.1e-20 Score=131.25 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=74.1
Q ss_pred hhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCce--ecCeeE
Q 015870 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM--VVSKPL 376 (399)
Q Consensus 299 ~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~--~~g~~l 376 (399)
....+++++|+|+|||+.+++++|+++|++||.|.++++++. +|+|||+|++.++|.+|+..|++.. ++|++|
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 345678899999999999999999999999999999999864 7899999999999999999999875 789999
Q ss_pred EEEEeeecH
Q 015870 377 YVALAQRKE 385 (399)
Q Consensus 377 ~v~~a~~~~ 385 (399)
+|+|+++++
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999999764
No 47
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.3e-20 Score=132.70 Aligned_cols=94 Identities=29% Similarity=0.507 Sum_probs=86.2
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 13 ~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
+++......+.++|||+|||+++++++|+++|++||.|.++.++.+..++.++|||||+|.+.++|.+|+..|++..|.|
T Consensus 2 ~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 1x5s_A 2 SSGSSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 81 (102)
T ss_dssp CCSCCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 44556677789999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cccEEeeccCCccc
Q 015870 93 KPIRVMYSHRDPSL 106 (399)
Q Consensus 93 ~~i~v~~~~~~~~~ 106 (399)
+.|+|.++......
T Consensus 82 ~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 82 RQIRVDQAGKSSDN 95 (102)
T ss_dssp CCCEEEEEECCCCC
T ss_pred eEEEEEECCCCCCC
Confidence 99999999766543
No 48
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=2.9e-20 Score=138.05 Aligned_cols=85 Identities=44% Similarity=0.725 Sum_probs=76.1
Q ss_pred CceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeec
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 384 (399)
..+|||+|||+.+++++|+++|++||.|.+++++.+. +.++|||||+|.+.++|.+|+..|||..++|++|+|.+++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4689999999999999999999999999999998875 447999999999999999999999999999999999999987
Q ss_pred HHHHHH
Q 015870 385 EDRRAR 390 (399)
Q Consensus 385 ~~~~~~ 390 (399)
.++...
T Consensus 84 ~~~~~~ 89 (115)
T 4f25_A 84 KEREAE 89 (115)
T ss_dssp CC----
T ss_pred cccccc
Confidence 765543
No 49
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.8e-21 Score=135.28 Aligned_cols=84 Identities=18% Similarity=0.370 Sum_probs=75.8
Q ss_pred hhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc--CceecCeeEE
Q 015870 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN--GKMVVSKPLY 377 (399)
Q Consensus 300 ~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~l~ 377 (399)
....+.++|||+|||+.++++||+++|++||.|.+++++++ +|||||+|++.++|.+|+..|+ +..+.|++|+
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 34567899999999999999999999999999999999875 7999999999999999999886 4789999999
Q ss_pred EEEeeecHHHH
Q 015870 378 VALAQRKEDRR 388 (399)
Q Consensus 378 v~~a~~~~~~~ 388 (399)
|.||+++...+
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99999876554
No 50
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=131.54 Aligned_cols=94 Identities=31% Similarity=0.578 Sum_probs=86.6
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
+....+....+.++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|+..|++..+.
T Consensus 4 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 4 GSSGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY 83 (105)
T ss_dssp CSSCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred CCCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 44455667788999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CcccEEeeccCCcc
Q 015870 92 GKPIRVMYSHRDPS 105 (399)
Q Consensus 92 g~~i~v~~~~~~~~ 105 (399)
|+.|+|.++.....
T Consensus 84 g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 84 GKPIRVNKASAHNK 97 (105)
T ss_dssp SCBCEEEETTTTSC
T ss_pred CeEEEEEECCCCCc
Confidence 99999999976644
No 51
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=9.6e-20 Score=128.51 Aligned_cols=82 Identities=28% Similarity=0.523 Sum_probs=75.5
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
.+.++|+|+|||..+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 467899999999999999999999999999999998885 8889999999999999999999999999999999999999
Q ss_pred eec
Q 015870 382 QRK 384 (399)
Q Consensus 382 ~~~ 384 (399)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 975
No 52
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=130.22 Aligned_cols=91 Identities=31% Similarity=0.421 Sum_probs=84.6
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
++.+...++.++++|||+|||+++++++|+++|++||.|.++.++.+..++.++|+|||+|.+.++|++|+..|++..+.
T Consensus 4 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 4 GSSGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp CCCCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 44555667888999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred CcccEEeeccC
Q 015870 92 GKPIRVMYSHR 102 (399)
Q Consensus 92 g~~i~v~~~~~ 102 (399)
|+.|+|.++.+
T Consensus 84 g~~l~v~~a~~ 94 (95)
T 2cqc_A 84 GRRIRVSGPSS 94 (95)
T ss_dssp TEEEEEECCSC
T ss_pred CEEEEEEecCC
Confidence 99999998864
No 53
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=133.21 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=79.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
+.+.++|||+|||+++++++|+++|++||.|.++.++.+..++.++|||||+|.+.++|++|+..||+..+.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 015870 100 SHRD 103 (399)
Q Consensus 100 ~~~~ 103 (399)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8654
No 54
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=5.8e-20 Score=124.52 Aligned_cols=78 Identities=23% Similarity=0.414 Sum_probs=72.3
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
..+..|+|+||++.+++++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.||+|+|.+|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4567899999999999999999999999999999876 48999999999999999999999999999999999995
Q ss_pred ecH
Q 015870 383 RKE 385 (399)
Q Consensus 383 ~~~ 385 (399)
+.+
T Consensus 80 e~~ 82 (89)
T 2wbr_A 80 ENE 82 (89)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 55
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=6.3e-20 Score=145.74 Aligned_cols=145 Identities=17% Similarity=0.311 Sum_probs=79.7
Q ss_pred EEeCCHHHHHHHHHHhCCCccC--CceeEEeccccchHHHHHHHH--HHHHhhHHhhhccCCceEEEecCCCcCCHHHHH
Q 015870 248 VNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKH--QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323 (399)
Q Consensus 248 v~f~~~~~a~~a~~~l~g~~~~--~~~l~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~ 323 (399)
.+|++.+++..++..+.+.... |+................... .............++++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 5677888888888887776544 444444332211100000000 000011112234567889999999999999999
Q ss_pred HhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecHHHHHHhh
Q 015870 324 QLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392 (399)
Q Consensus 324 ~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~ 392 (399)
.+|++||.|..|+++.+. +|.++|||||+|.+.++|.+|+..|||..|.|++|.|.||+++..++.+.+
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~~~~ 160 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVKKS 160 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-------
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCCCCC
Confidence 999999999999998874 788999999999999999999999999999999999999998887765554
No 56
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-20 Score=131.97 Aligned_cols=86 Identities=17% Similarity=0.396 Sum_probs=79.2
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCC--eEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----CC
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT----PL 90 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~--v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~----~~ 90 (399)
+.......+|||+|||+++|+++|+++|++||. +.+|.+++++.+|.++|||||+|.+.++|++|+..||+. .+
T Consensus 3 ~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 3 HHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred cccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 456778899999999999999999999999994 679999999999999999999999999999999999986 38
Q ss_pred CCcccEEeeccC
Q 015870 91 NGKPIRVMYSHR 102 (399)
Q Consensus 91 ~g~~i~v~~~~~ 102 (399)
+|++|.|.++++
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 899999999864
No 57
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.4e-19 Score=126.44 Aligned_cols=81 Identities=37% Similarity=0.619 Sum_probs=76.5
Q ss_pred CceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeee
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 383 (399)
+.+|+|+|||+.+++++|+++|++||.|.+++++.+ .++.++|+|||+|.+.++|.+|+..|||..++|++|+|++|++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999887 4788999999999999999999999999999999999999997
Q ss_pred cH
Q 015870 384 KE 385 (399)
Q Consensus 384 ~~ 385 (399)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 58
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=8.4e-20 Score=132.35 Aligned_cols=85 Identities=20% Similarity=0.443 Sum_probs=80.5
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+.++|||+|||+.+++++|+++|++||.|.++++..+.+++++|||||+|.+.++|.+|+..||+..++|+.|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45678999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred eecHH
Q 015870 382 QRKED 386 (399)
Q Consensus 382 ~~~~~ 386 (399)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 98754
No 59
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=1.2e-19 Score=137.20 Aligned_cols=92 Identities=32% Similarity=0.424 Sum_probs=84.9
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
...+...++.++++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|+..|++..|.
T Consensus 35 ~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 35 RHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 114 (129)
T ss_dssp CCCCCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34445666888999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred CcccEEeeccCC
Q 015870 92 GKPIRVMYSHRD 103 (399)
Q Consensus 92 g~~i~v~~~~~~ 103 (399)
|+.|.|.++...
T Consensus 115 g~~l~V~~a~~~ 126 (129)
T 2kxn_B 115 GRRIRVDFSITK 126 (129)
T ss_dssp SSCCEESCCSSS
T ss_pred CEEEEEEEecCC
Confidence 999999998654
No 60
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-20 Score=132.61 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=76.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC-CCCCCCcccEEeec
Q 015870 23 TTSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN-FTPLNGKPIRVMYS 100 (399)
Q Consensus 23 ~~~l~v~nLP~~~~~~~l~~~f~~~g-~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~-~~~~~g~~i~v~~~ 100 (399)
+++|+|+|||+++|+++|+++|++|| .|.+|.+++++.+|.++|||||+|.+.++|++|+..++ +..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 89999999999999999999999999999999999764 55799999999999
Q ss_pred cCCcc
Q 015870 101 HRDPS 105 (399)
Q Consensus 101 ~~~~~ 105 (399)
.+.+.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76544
No 61
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.5e-19 Score=129.90 Aligned_cols=88 Identities=24% Similarity=0.392 Sum_probs=81.3
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
++++|||+|||..+++++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|+..|||..++|+.|+|++|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999998875 68899999999999999999999999999999999999999
Q ss_pred ecHHHHHHh
Q 015870 383 RKEDRRARL 391 (399)
Q Consensus 383 ~~~~~~~~~ 391 (399)
++....+..
T Consensus 81 ~~~~~~~~~ 89 (96)
T 2x1f_A 81 NSDISGVSL 89 (96)
T ss_dssp CSSGGGHHH
T ss_pred CCCCCCcch
Confidence 887665443
No 62
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=4.8e-19 Score=128.06 Aligned_cols=90 Identities=22% Similarity=0.493 Sum_probs=83.2
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcc
Q 015870 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (399)
Q Consensus 15 ~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~ 94 (399)
..+....+.++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|+. +++..+.|+.
T Consensus 2 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 80 (99)
T 2dgs_A 2 SSGSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKK 80 (99)
T ss_dssp CCCCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeE
Confidence 345667788999999999999999999999999999999999998889999999999999999999999 8999999999
Q ss_pred cEEeeccCCcc
Q 015870 95 IRVMYSHRDPS 105 (399)
Q Consensus 95 i~v~~~~~~~~ 105 (399)
|+|.++.....
T Consensus 81 l~V~~a~~~~~ 91 (99)
T 2dgs_A 81 VEVKRAEPRDS 91 (99)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999976544
No 63
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=130.47 Aligned_cols=92 Identities=20% Similarity=0.398 Sum_probs=84.8
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 015870 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (399)
Q Consensus 14 ~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~ 93 (399)
.+......++++|||+|||+++++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|+..|++..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 6 SGPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp CCSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 34455678899999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ccEEeeccCCcc
Q 015870 94 PIRVMYSHRDPS 105 (399)
Q Consensus 94 ~i~v~~~~~~~~ 105 (399)
.|+|.++.....
T Consensus 86 ~l~v~~a~~~~~ 97 (103)
T 2cq0_A 86 ILNVEWAKPSTN 97 (103)
T ss_dssp ECEEEESSCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 64
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=5.1e-19 Score=131.76 Aligned_cols=96 Identities=28% Similarity=0.543 Sum_probs=87.8
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 015870 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (399)
Q Consensus 11 ~~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 90 (399)
.+.........+.++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|+..|++..|
T Consensus 3 s~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (115)
T 2dgo_A 3 SGSSGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 82 (115)
T ss_dssp SSCCSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 44555667788999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCcccEEeeccCCccc
Q 015870 91 NGKPIRVMYSHRDPSL 106 (399)
Q Consensus 91 ~g~~i~v~~~~~~~~~ 106 (399)
.|+.|+|.++...+..
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 83 GGRQIRTNWATRKPPA 98 (115)
T ss_dssp TTEECEEEESSCCCCC
T ss_pred CCEEEEEEEccCCCCC
Confidence 9999999999766443
No 65
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=129.55 Aligned_cols=92 Identities=30% Similarity=0.547 Sum_probs=78.8
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC
Q 015870 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (399)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~ 89 (399)
+..++..+..+.+.++|||+|||+++++++|+++|++||+|.++.++.+.. +.++|+|||+|.+.++|.+|+..|++..
T Consensus 3 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (95)
T 2ywk_A 3 SGSSGMFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIR 81 (95)
T ss_dssp ---------CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCE
T ss_pred CCcCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 334455677788999999999999999999999999999999999999875 8899999999999999999999999999
Q ss_pred CCCcccEEeeccC
Q 015870 90 LNGKPIRVMYSHR 102 (399)
Q Consensus 90 ~~g~~i~v~~~~~ 102 (399)
+.|+.|+|.++..
T Consensus 82 ~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 82 LYGRPINVSGPSS 94 (95)
T ss_dssp ETTEECEEECCCC
T ss_pred ECCCEEEEEEcCC
Confidence 9999999998753
No 66
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=2.5e-19 Score=141.66 Aligned_cols=139 Identities=15% Similarity=0.297 Sum_probs=109.3
Q ss_pred EEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC-CCC------cccEEeeccCC----cccccCCCceEEEcCCC
Q 015870 52 SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP-LNG------KPIRVMYSHRD----PSLRKSGAGNIFIKNLD 120 (399)
Q Consensus 52 ~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~-~~g------~~i~v~~~~~~----~~~~~~~~~~l~v~nlp 120 (399)
++.+..+. ..++|||||+|.+.++|++|+..+++.. +.| ........... .........+|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 35566653 3688999999999999999998876432 222 22222221111 12223446789999999
Q ss_pred cccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeeccccccc
Q 015870 121 KAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192 (399)
Q Consensus 121 ~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~ 192 (399)
+++++++|+++|+.||.|..+.+..+ .++.++|+|||+|.+.++|..|++.|++..+.|+.|.|.+..+...
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999999988 4788999999999999999999999999999999999998775543
No 67
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-19 Score=130.22 Aligned_cols=92 Identities=23% Similarity=0.403 Sum_probs=85.3
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 015870 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (399)
Q Consensus 14 ~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~ 93 (399)
+..+....++++|||+|||+++++++|+++|++||.|.++.++.+..++.++|+|||+|.+.++|++|+..|++..+.|+
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 4 GSSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp CCCSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 44566778899999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ccEEeeccCCcc
Q 015870 94 PIRVMYSHRDPS 105 (399)
Q Consensus 94 ~i~v~~~~~~~~ 105 (399)
.|.|.++.....
T Consensus 84 ~l~V~~a~~~~~ 95 (103)
T 2dnm_A 84 ELRVQVARYGRR 95 (103)
T ss_dssp CCEEEECSSCCS
T ss_pred EEEEEECCcCCC
Confidence 999999986543
No 68
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=6.9e-20 Score=134.14 Aligned_cols=88 Identities=31% Similarity=0.592 Sum_probs=82.2
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecC---eeEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS---KPLYV 378 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g---~~l~v 378 (399)
..++++|||+|||+.+++++|+++|++||.|.++++..+.++.++|||||+|.+.++|.+|+..||+..+.| ++|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 356789999999999999999999999999999999998889999999999999999999999999999988 99999
Q ss_pred EEeeecHHHHH
Q 015870 379 ALAQRKEDRRA 389 (399)
Q Consensus 379 ~~a~~~~~~~~ 389 (399)
.||+++.+++.
T Consensus 92 ~~a~~~~~~~~ 102 (105)
T 2dnh_A 92 KFADTDKESGP 102 (105)
T ss_dssp EESCSSCCCSC
T ss_pred EECccCcccCC
Confidence 99998876543
No 69
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=131.24 Aligned_cols=87 Identities=26% Similarity=0.461 Sum_probs=81.3
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..++++|||+|||+.+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|+..||+..++|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999998887 888999999999999999999999999999999999999
Q ss_pred eeecHHHH
Q 015870 381 AQRKEDRR 388 (399)
Q Consensus 381 a~~~~~~~ 388 (399)
++++..++
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 99887643
No 70
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.5e-20 Score=134.58 Aligned_cols=90 Identities=19% Similarity=0.351 Sum_probs=78.5
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc--CceecCeeEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN--GKMVVSKPLYVA 379 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~l~v~ 379 (399)
.+++++|||+|||+.++++||+++|++||.|.+++++++ +|||||+|++.++|.+|+..++ +..+.|++|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 457889999999999999999999999999999999876 7999999999999999999987 468999999999
Q ss_pred EeeecHHHHHHhhhhhhccC
Q 015870 380 LAQRKEDRRARLQVCLLQCR 399 (399)
Q Consensus 380 ~a~~~~~~~~~~~~~~~~~~ 399 (399)
||+++..++ ..+.-|||
T Consensus 103 ~a~~k~~~~---~~~~~~~~ 119 (119)
T 2ad9_A 103 FSNHKELKT---DSSPNQAR 119 (119)
T ss_dssp ECSSSSCCC---CCCTTTTC
T ss_pred EccCCCCCc---ccccccCC
Confidence 999876554 34444443
No 71
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.7e-19 Score=129.78 Aligned_cols=95 Identities=21% Similarity=0.451 Sum_probs=86.6
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeee-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCCC
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD-LSTRRSLGYGYVNFSNAQEAARALEML-NFTP 89 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~-~~~~~~~g~a~V~f~~~~~A~~a~~~l-~~~~ 89 (399)
+....+....+.++|||+|||+++++++|+++|++||.|.++.++.+ ..++.++|||||+|.+.++|.+|+..| ++..
T Consensus 4 ~s~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 83 (107)
T 2cph_A 4 GSSGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH 83 (107)
T ss_dssp CCCCSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB
T ss_pred CCCcccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe
Confidence 44455667888999999999999999999999999999999999988 778999999999999999999999999 8999
Q ss_pred CCCcccEEeeccCCccc
Q 015870 90 LNGKPIRVMYSHRDPSL 106 (399)
Q Consensus 90 ~~g~~i~v~~~~~~~~~ 106 (399)
|.|+.|+|.++......
T Consensus 84 ~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 84 LYGRRLVLEWADSEVTV 100 (107)
T ss_dssp SSSCBCEEEECCCCCCC
T ss_pred ECCCEEEEEeCCCCCCC
Confidence 99999999999876543
No 72
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=129.64 Aligned_cols=83 Identities=27% Similarity=0.485 Sum_probs=78.5
Q ss_pred hccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 301 ~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
...+.++|||+|||+.+++++|+++|++||.|.+++++.+.++.++|||||+|.+.++|.+|+..||+..++|++|+|++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34567899999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred eee
Q 015870 381 AQR 383 (399)
Q Consensus 381 a~~ 383 (399)
|++
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 975
No 73
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=1.8e-19 Score=126.54 Aligned_cols=81 Identities=32% Similarity=0.512 Sum_probs=76.4
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|+|+|||+.+++++|+++|++||.|.+++++.+ .++.++|+|||+|.+.++|.+|+..|||..++|++|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457789999999999999999999999999999999877 5788999999999999999999999999999999999999
Q ss_pred ee
Q 015870 381 AQ 382 (399)
Q Consensus 381 a~ 382 (399)
||
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 74
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=7.8e-20 Score=133.31 Aligned_cols=87 Identities=64% Similarity=1.071 Sum_probs=81.6
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+.++|||+|||+.+++++|+++|++||.|.++++..+ ++.++|||||+|.+.++|.+|+..||+..++|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457789999999999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred eecHHHHH
Q 015870 382 QRKEDRRA 389 (399)
Q Consensus 382 ~~~~~~~~ 389 (399)
+++.+++.
T Consensus 91 ~~~~~~~~ 98 (103)
T 2d9p_A 91 QRKEERQS 98 (103)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 98876554
No 75
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=7e-19 Score=128.20 Aligned_cols=93 Identities=28% Similarity=0.526 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 015870 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (399)
Q Consensus 11 ~~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 90 (399)
.+.......+.+.++|||+|||+++++++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|+..|++..+
T Consensus 3 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2d9p_A 3 SGSSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 80 (103)
T ss_dssp CCCCCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 344445566779999999999999999999999999999999999987 789999999999999999999999999999
Q ss_pred CCcccEEeeccCCcc
Q 015870 91 NGKPIRVMYSHRDPS 105 (399)
Q Consensus 91 ~g~~i~v~~~~~~~~ 105 (399)
.|+.|.|.++.....
T Consensus 81 ~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 81 ATKPLYVALAQRKEE 95 (103)
T ss_dssp SSSBCEEEECSSCCC
T ss_pred CCcEEEEEEeccccc
Confidence 999999999976544
No 76
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.9e-20 Score=131.83 Aligned_cols=86 Identities=34% Similarity=0.616 Sum_probs=80.3
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEE-EEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC-KVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v-~~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
.++++|||+|||+.+++++|+++|++||.|.++ +++.+ .++.++|||||+|.+.++|.+|+..||+..++|++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 99887 5888999999999999999999999999999999999999
Q ss_pred eeecHHHH
Q 015870 381 AQRKEDRR 388 (399)
Q Consensus 381 a~~~~~~~ 388 (399)
++++..+.
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 99877544
No 77
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=131.11 Aligned_cols=93 Identities=28% Similarity=0.451 Sum_probs=85.3
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 13 ~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
+++......+.++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+..|++..|.|
T Consensus 2 s~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2cqb_A 2 SSGSSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 81 (102)
T ss_dssp CCCSSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT
T ss_pred CCCcCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34455667789999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cccEEeeccCCcc
Q 015870 93 KPIRVMYSHRDPS 105 (399)
Q Consensus 93 ~~i~v~~~~~~~~ 105 (399)
+.|+|.++.....
T Consensus 82 ~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 82 RTIRVNLAKPMRI 94 (102)
T ss_dssp EEEEEEECCCCCC
T ss_pred cEEEEEeCCCCCC
Confidence 9999999876543
No 78
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6.2e-19 Score=127.75 Aligned_cols=92 Identities=20% Similarity=0.357 Sum_probs=83.8
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
..........+.++|||+|||+++++++|+++|++||.|.++.++.+. ++.++|+|||+|.+.++|.+|+..|++..+.
T Consensus 6 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 6 SGVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp SSCCCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCcCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 334455667888999999999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred CcccEEeeccCCc
Q 015870 92 GKPIRVMYSHRDP 104 (399)
Q Consensus 92 g~~i~v~~~~~~~ 104 (399)
|+.|+|.++.+.+
T Consensus 85 g~~l~v~~a~~~~ 97 (100)
T 2do4_A 85 ENIIKVAISNSGP 97 (100)
T ss_dssp SCEEEEEECCCCS
T ss_pred CEEEEEEECCCCC
Confidence 9999999987643
No 79
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.1e-20 Score=131.77 Aligned_cols=85 Identities=18% Similarity=0.280 Sum_probs=78.9
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
...++|||+|||+.+++++|+++|++||.|.+|+++.+..|.++|||||+|.+.++|.+|+. +++..++|+.|.|.+++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 45689999999999999999999999999999999998889999999999999999999998 89999999999999998
Q ss_pred ecHHHH
Q 015870 383 RKEDRR 388 (399)
Q Consensus 383 ~~~~~~ 388 (399)
+...++
T Consensus 88 ~~~~~k 93 (103)
T 1s79_A 88 DYFAKK 93 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 755544
No 80
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=5.3e-20 Score=132.94 Aligned_cols=84 Identities=18% Similarity=0.272 Sum_probs=78.5
Q ss_pred CCceEEEecCCC------cCCHHHHHHhhcCcCCceEEEEeeCCC-CCcccEEEEEeCCHHHHHHHHHHhcCceecC-ee
Q 015870 304 QGANLYIKNLDD------SIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFSTPEEASRALLEMNGKMVVS-KP 375 (399)
Q Consensus 304 ~~~~l~v~nl~~------~~~~~dl~~~f~~~G~v~~v~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g-~~ 375 (399)
.+++|||+|||+ .+++++|+++|++||.|.+++++.+.. |+++|||||+|.+.++|.+|+..|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 999999999999999999999988874 8999999999999999999999999999999 99
Q ss_pred EEEEEeeecHHH
Q 015870 376 LYVALAQRKEDR 387 (399)
Q Consensus 376 l~v~~a~~~~~~ 387 (399)
|+|.+|++++..
T Consensus 85 l~V~~a~~~~~~ 96 (100)
T 3ns6_A 85 LFLYTMKDVERY 96 (100)
T ss_dssp CEEEESHHHHHH
T ss_pred EEEEECchhhhh
Confidence 999999976644
No 81
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.9e-19 Score=130.25 Aligned_cols=94 Identities=18% Similarity=0.325 Sum_probs=86.2
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC-----
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN----- 86 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~----- 86 (399)
+....+....++++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+..++
T Consensus 4 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~ 83 (111)
T 1x4h_A 4 GSSGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEG 83 (111)
T ss_dssp CCCCCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTT
T ss_pred CCCCCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhcccccc
Confidence 344556778889999999999999999999999999999999999998899999999999999999999999999
Q ss_pred -CCCCCCcccEEeeccCCcc
Q 015870 87 -FTPLNGKPIRVMYSHRDPS 105 (399)
Q Consensus 87 -~~~~~g~~i~v~~~~~~~~ 105 (399)
+..+.|+.|.|.++.....
T Consensus 84 ~~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 84 GGLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp CCEESSSCEEEEECCCCCCC
T ss_pred CCcEEcCEEEEEEECCCCcc
Confidence 9999999999999876543
No 82
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=127.98 Aligned_cols=85 Identities=34% Similarity=0.617 Sum_probs=79.8
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
.++++|||+|||..+++++|+++|++||.|.++++..+. +++++|||||+|.+.++|.+|+..||+..++|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 467899999999999999999999999999999998885 6889999999999999999999999999999999999999
Q ss_pred eecHHH
Q 015870 382 QRKEDR 387 (399)
Q Consensus 382 ~~~~~~ 387 (399)
+++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 987654
No 83
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-19 Score=131.50 Aligned_cols=87 Identities=29% Similarity=0.466 Sum_probs=81.0
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||+.+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|+..||+..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4567899999999999999999999999999999998885 788999999999999999999999999999999999999
Q ss_pred eeecHHHH
Q 015870 381 AQRKEDRR 388 (399)
Q Consensus 381 a~~~~~~~ 388 (399)
++++..+.
T Consensus 92 a~~~~~~~ 99 (103)
T 2cq0_A 92 AKPSTNSG 99 (103)
T ss_dssp SSCCCCSC
T ss_pred CCCCCCCC
Confidence 99876543
No 84
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=2.7e-19 Score=132.14 Aligned_cols=86 Identities=20% Similarity=0.422 Sum_probs=80.3
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..++++|||+|||+.+++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999998774 788999999999999999999999999999999999999
Q ss_pred eeecHHH
Q 015870 381 AQRKEDR 387 (399)
Q Consensus 381 a~~~~~~ 387 (399)
++++..+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9988754
No 85
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=8.2e-19 Score=130.59 Aligned_cols=89 Identities=24% Similarity=0.355 Sum_probs=82.5
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
+....+.++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|+..|++..|.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34466789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EeeccCCcc
Q 015870 97 VMYSHRDPS 105 (399)
Q Consensus 97 v~~~~~~~~ 105 (399)
|.++.....
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999876543
No 86
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=124.97 Aligned_cols=84 Identities=30% Similarity=0.540 Sum_probs=76.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
..+.++|||+|||.++++++|+++|++||.|.++.++.+..++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCC
Q 015870 100 SHRD 103 (399)
Q Consensus 100 ~~~~ 103 (399)
+.+.
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8754
No 87
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=1.8e-19 Score=134.13 Aligned_cols=87 Identities=38% Similarity=0.606 Sum_probs=81.2
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
.++.++|||+|||+.+++++|+++|++||.|.+++++.+. +++++|||||+|.+.++|.+|+..||+..++|+.|+|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999998886 788999999999999999999999999999999999999
Q ss_pred eeecHHHH
Q 015870 381 AQRKEDRR 388 (399)
Q Consensus 381 a~~~~~~~ 388 (399)
++++..++
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 99887654
No 88
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=9.1e-20 Score=129.18 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=71.1
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcC--CceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G--~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
.+|||+|||+.+++++|+++|++|| .|.+++++.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.+++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999998885 88999999999999999999999999999999999999999
Q ss_pred ecHHHH
Q 015870 383 RKEDRR 388 (399)
Q Consensus 383 ~~~~~~ 388 (399)
+.....
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 876554
No 89
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.1e-19 Score=128.65 Aligned_cols=91 Identities=24% Similarity=0.336 Sum_probs=83.4
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 13 ~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
..+.+....++++|||+|||+++++++|+++|++||.|.++.++.++.++.++|+|||+|.+.++|.+|+..|++..+.|
T Consensus 13 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 13 DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp --CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 44556667788999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred cccEEeeccCC
Q 015870 93 KPIRVMYSHRD 103 (399)
Q Consensus 93 ~~i~v~~~~~~ 103 (399)
+.|.|.++...
T Consensus 93 ~~l~V~~a~~~ 103 (106)
T 1p27_B 93 QPISVDWCFVR 103 (106)
T ss_dssp SBCEEEESEES
T ss_pred cEEEEEeecCC
Confidence 99999998654
No 90
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=126.40 Aligned_cols=93 Identities=26% Similarity=0.417 Sum_probs=83.5
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 015870 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (399)
Q Consensus 11 ~~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 90 (399)
+++...+....+.++|||+|||+++++++|+++|++||.|.++.++.+.. .++|+|||+|.+.++|.+|+..|++..|
T Consensus 3 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~ 80 (103)
T 2cq3_A 3 SGSSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV 80 (103)
T ss_dssp SCCCCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 44556667788899999999999999999999999999999999998753 3789999999999999999999999999
Q ss_pred CCcccEEeeccCCcc
Q 015870 91 NGKPIRVMYSHRDPS 105 (399)
Q Consensus 91 ~g~~i~v~~~~~~~~ 105 (399)
.|+.|+|.++.....
T Consensus 81 ~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 81 EGRKIEVNNATARVM 95 (103)
T ss_dssp TTEECEEEECCSSCC
T ss_pred CCEEEEEEEcccCCC
Confidence 999999999976544
No 91
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.8e-19 Score=126.47 Aligned_cols=87 Identities=21% Similarity=0.356 Sum_probs=81.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
...++++|||+|||+++++++|+++|++||+|.++.++.+..++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccCCcc
Q 015870 99 YSHRDPS 105 (399)
Q Consensus 99 ~~~~~~~ 105 (399)
++.....
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987654
No 92
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.1e-19 Score=126.30 Aligned_cols=81 Identities=22% Similarity=0.443 Sum_probs=76.4
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
.++.++|||+|||+.+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|++.||+..++|++|+|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4567899999999999999999999999999999998876 588999999999999999999999999999999999999
Q ss_pred ee
Q 015870 381 AQ 382 (399)
Q Consensus 381 a~ 382 (399)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 93
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=5.1e-19 Score=124.15 Aligned_cols=83 Identities=30% Similarity=0.492 Sum_probs=78.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
...+.++|||+|||+++++++|+++|++||.|.++.++.+..++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35678999999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred ecc
Q 015870 99 YSH 101 (399)
Q Consensus 99 ~~~ 101 (399)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 863
No 94
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=1.6e-19 Score=136.78 Aligned_cols=90 Identities=12% Similarity=0.108 Sum_probs=79.4
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCC---eEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 015870 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (399)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~---v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~ 86 (399)
+.|+....+.....++|||+|||+++|+++|+++|++||. |.+|.++.++. |+++|+|||+|.+.++|++|+. ++
T Consensus 31 g~g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~ 108 (136)
T 2hgl_A 31 GRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KD 108 (136)
T ss_dssp ----CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TT
T ss_pred CCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cC
Confidence 3444444666788999999999999999999999999998 89999999976 9999999999999999999999 99
Q ss_pred CCCCCCcccEEeecc
Q 015870 87 FTPLNGKPIRVMYSH 101 (399)
Q Consensus 87 ~~~~~g~~i~v~~~~ 101 (399)
+..+.|+.|.|.++.
T Consensus 109 g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 109 RESMGHRYIEVFKSH 123 (136)
T ss_dssp EEESSSSEEEEEECC
T ss_pred CCEECCEEEEEEECC
Confidence 999999999998874
No 95
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=1.3e-18 Score=126.72 Aligned_cols=92 Identities=24% Similarity=0.391 Sum_probs=83.5
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
+..+.+....+.++|||+|||+++++++|+++|++|| |.++.++.++.++.++|||||+|.+.++|.+|+ .|++..|.
T Consensus 4 g~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 81 (103)
T 2dng_A 4 GSSGKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG 81 (103)
T ss_dssp CCCCCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC
Confidence 3444566677899999999999999999999999997 999999999989999999999999999999999 79999999
Q ss_pred CcccEEeeccCCcc
Q 015870 92 GKPIRVMYSHRDPS 105 (399)
Q Consensus 92 g~~i~v~~~~~~~~ 105 (399)
|+.|+|.++.....
T Consensus 82 g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 82 DRSLRVDIAEGRKQ 95 (103)
T ss_dssp TEECEEEECCCCCC
T ss_pred CeEEEEEEecCCCC
Confidence 99999999876544
No 96
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=129.79 Aligned_cols=94 Identities=26% Similarity=0.374 Sum_probs=85.5
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC
Q 015870 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (399)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~ 89 (399)
+.++...+..+.+.++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|+..+++ .
T Consensus 4 ~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~ 82 (116)
T 2cqd_A 4 GSSGMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-I 82 (116)
T ss_dssp CCCCCCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-E
T ss_pred CCCCCCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-c
Confidence 344555677788999999999999999999999999999999999999988999999999999999999999999987 8
Q ss_pred CCCcccEEeeccCCc
Q 015870 90 LNGKPIRVMYSHRDP 104 (399)
Q Consensus 90 ~~g~~i~v~~~~~~~ 104 (399)
|.|+.|+|.++....
T Consensus 83 ~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 83 IDGRKANVNLAYLGA 97 (116)
T ss_dssp ETTEECEEEESTTTC
T ss_pred CCCEEEEEEEcccCC
Confidence 999999999986543
No 97
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=124.15 Aligned_cols=86 Identities=37% Similarity=0.620 Sum_probs=80.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
+.++++|||+|||.++++++|+++|++||.|.++.++.++.++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35789999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 015870 100 SHRDPS 105 (399)
Q Consensus 100 ~~~~~~ 105 (399)
+.....
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 976543
No 98
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=130.65 Aligned_cols=87 Identities=30% Similarity=0.457 Sum_probs=80.5
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||+.+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|++.||+..++|+.|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3567899999999999999999999999999999998874 688999999999999999999999999999999999999
Q ss_pred eeecHHHH
Q 015870 381 AQRKEDRR 388 (399)
Q Consensus 381 a~~~~~~~ 388 (399)
++++..++
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 99876544
No 99
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.7e-19 Score=129.17 Aligned_cols=94 Identities=26% Similarity=0.383 Sum_probs=85.5
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 015870 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (399)
Q Consensus 11 ~~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 90 (399)
..++.......+.++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|+.. ++..|
T Consensus 4 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~ 82 (105)
T 2dh8_A 4 GSSGMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL 82 (105)
T ss_dssp SCCCCCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE
T ss_pred CCCCCCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE
Confidence 34455566788999999999999999999999999999999999999988999999999999999999999998 99999
Q ss_pred CCcccEEeeccCCcc
Q 015870 91 NGKPIRVMYSHRDPS 105 (399)
Q Consensus 91 ~g~~i~v~~~~~~~~ 105 (399)
.|+.|.|.++.....
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 83 DGRNIDPKPCTPRGM 97 (105)
T ss_dssp TTEEEBCCCSCCSSC
T ss_pred CCEEEEEEEccCCCC
Confidence 999999999875543
No 100
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=128.49 Aligned_cols=82 Identities=20% Similarity=0.357 Sum_probs=74.7
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc--CceecCeeEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN--GKMVVSKPLYVA 379 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~l~v~ 379 (399)
.+++++|||+|||+.++++||+++|++||.|.++.++++ +|||||+|++.++|.+|++.|+ +..+.|++|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 457789999999999999999999999999999998875 7999999999999999999874 678999999999
Q ss_pred EeeecHHHH
Q 015870 380 LAQRKEDRR 388 (399)
Q Consensus 380 ~a~~~~~~~ 388 (399)
||+++..++
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2cq1_A 87 YSNHKELKT 95 (101)
T ss_dssp ECSCSSCCC
T ss_pred EcCcccCcC
Confidence 999876554
No 101
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=5.8e-19 Score=131.47 Aligned_cols=106 Identities=20% Similarity=0.374 Sum_probs=94.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
.+.++++|||+|||+++++++|+++|++||.|.++.++.+ +.++|+|||+|.+.++|.+|+..||+..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3567899999999999999999999999999999999865 4457899999999999999999999999999999999
Q ss_pred eccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCC
Q 015870 99 YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137 (399)
Q Consensus 99 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~ 137 (399)
++...... .+++...+++++.++|+.||.
T Consensus 81 ~a~~~~~~----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh----------hhhhHhHhHHHHHHHHHHhCC
Confidence 98754332 578888999999999999874
No 102
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.2e-19 Score=126.59 Aligned_cols=82 Identities=24% Similarity=0.319 Sum_probs=77.0
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|+|+|||+.+++++|+++|++||.|.+++++.+. ++.++|+|||+|.+.++|.+|+..||+..++|++|+|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999998876 578999999999999999999999999999999999999
Q ss_pred eee
Q 015870 381 AQR 383 (399)
Q Consensus 381 a~~ 383 (399)
|++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 985
No 103
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=125.56 Aligned_cols=87 Identities=23% Similarity=0.416 Sum_probs=81.7
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEE--------EEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 015870 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS--------VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (399)
Q Consensus 15 ~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~--------i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~ 86 (399)
..+..+.+.++|||+|||+++++++|+++|++||.|.+ +.++.++.+|.++|+|||+|.+.++|++|+..|+
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 5 HHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34667888999999999999999999999999999999 9999998899999999999999999999999999
Q ss_pred CCCCCCcccEEeecc
Q 015870 87 FTPLNGKPIRVMYSH 101 (399)
Q Consensus 87 ~~~~~g~~i~v~~~~ 101 (399)
+..+.|+.|+|.+++
T Consensus 85 g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 85 GKEFSGNPIKVSFAT 99 (99)
T ss_dssp TCBSSSSBCEEEECC
T ss_pred CCEeCCcEEEEEecC
Confidence 999999999998863
No 104
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=130.31 Aligned_cols=85 Identities=21% Similarity=0.426 Sum_probs=79.2
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..++++|||+|||+.+++++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3467899999999999999999999999999999998875 588999999999999999999999999999999999999
Q ss_pred eeecHH
Q 015870 381 AQRKED 386 (399)
Q Consensus 381 a~~~~~ 386 (399)
|+++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 998753
No 105
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=128.61 Aligned_cols=86 Identities=19% Similarity=0.411 Sum_probs=79.7
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||..+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|++ ||+..++|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999998875 68899999999999999999998 999999999999999
Q ss_pred eeecHHHH
Q 015870 381 AQRKEDRR 388 (399)
Q Consensus 381 a~~~~~~~ 388 (399)
++++..+.
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 99876544
No 106
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=127.19 Aligned_cols=89 Identities=35% Similarity=0.582 Sum_probs=82.8
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcc
Q 015870 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (399)
Q Consensus 15 ~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~ 94 (399)
-.+..+.++++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+..|++..+.|+.
T Consensus 18 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 18 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp SSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34556778899999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred cEEeeccCC
Q 015870 95 IRVMYSHRD 103 (399)
Q Consensus 95 i~v~~~~~~ 103 (399)
|+|.++.+.
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999998654
No 107
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=128.50 Aligned_cols=78 Identities=24% Similarity=0.336 Sum_probs=71.7
Q ss_pred cCCceEEEecCCC-cCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC--ceecCeeEEEE
Q 015870 303 FQGANLYIKNLDD-SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG--KMVVSKPLYVA 379 (399)
Q Consensus 303 ~~~~~l~v~nl~~-~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~~g~~l~v~ 379 (399)
.++++|||+|||+ .++++||+++|++||.|.+++++++ +|||||+|++.++|.+|+..||+ ..+.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 4678999999999 9999999999999999999999875 68999999999999999999986 45999999999
Q ss_pred EeeecH
Q 015870 380 LAQRKE 385 (399)
Q Consensus 380 ~a~~~~ 385 (399)
||+.++
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 999654
No 108
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=3.2e-20 Score=141.66 Aligned_cols=126 Identities=18% Similarity=0.263 Sum_probs=82.3
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCceeEEeccccchHHHHHHHHHHHHhhHHhhhccCCceEEEecCCCcCCHHHHHH
Q 015870 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324 (399)
Q Consensus 245 ~~~v~f~~~~~a~~a~~~l~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~dl~~ 324 (399)
..|.++.+...+..|+..++|....|+.- .....+ .....+.++|||+|||+.+++++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~------------------~~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP------------------PPDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp ------------------------------CCSCCS------------------CSSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC------------------CCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 46778888888888888887766544431 111111 11234578999999999999999999
Q ss_pred hhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecHHHHH
Q 015870 325 LFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389 (399)
Q Consensus 325 ~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~ 389 (399)
+|++||.|.+++++.+. ++.++|||||+|.+.++|.+|+..||+..++|++|+|+|++++..+..
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~~ 132 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 132 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCTT
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCcc
Confidence 99999999999998875 788999999999999999999999999999999999999998765543
No 109
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=131.00 Aligned_cols=84 Identities=33% Similarity=0.598 Sum_probs=78.9
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..++++|||+|||..+++++|+++|++||.|.+++++.+. +|+++|||||+|.+.++|.+|+..|||..++|++|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4577899999999999999999999999999999998874 688999999999999999999999999999999999999
Q ss_pred eeecH
Q 015870 381 AQRKE 385 (399)
Q Consensus 381 a~~~~ 385 (399)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 99874
No 110
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.7e-19 Score=126.51 Aligned_cols=88 Identities=28% Similarity=0.493 Sum_probs=82.0
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeE-EEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcc
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV-SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~-~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~ 94 (399)
+.....++++|||+|||+++++++|+++|++||.|. ++.++.++.++.++|||||+|.+.++|++|+..||+..+.|+.
T Consensus 2 ss~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 2 SSGSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CCCCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 345567889999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred ----cEEeeccCC
Q 015870 95 ----IRVMYSHRD 103 (399)
Q Consensus 95 ----i~v~~~~~~ 103 (399)
|+|.++...
T Consensus 82 ~~~~l~v~~a~~~ 94 (99)
T 2div_A 82 PAKRFKLNYATYS 94 (99)
T ss_dssp SCEECCEEETTCC
T ss_pred cceeEEEeecCCC
Confidence 999998755
No 111
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=1.1e-18 Score=121.75 Aligned_cols=81 Identities=35% Similarity=0.619 Sum_probs=77.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccC
Q 015870 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (399)
Q Consensus 23 ~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (399)
+.+|||+|||+++++++|+++|++||+|.++.++.+..++.++|+|||+|.+.++|++|+..|++..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred C
Q 015870 103 D 103 (399)
Q Consensus 103 ~ 103 (399)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=7.2e-19 Score=137.52 Aligned_cols=125 Identities=19% Similarity=0.255 Sum_probs=109.8
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHh-CCCCCCCcccEEeeccCC--------------cccccCCCceEEEcCCCcccCH
Q 015870 61 TRRSLGYGYVNFSNAQEAARALEML-NFTPLNGKPIRVMYSHRD--------------PSLRKSGAGNIFIKNLDKAIDH 125 (399)
Q Consensus 61 ~~~~~g~a~V~f~~~~~A~~a~~~l-~~~~~~g~~i~v~~~~~~--------------~~~~~~~~~~l~v~nlp~~~t~ 125 (399)
....+|+++|+|.+.++|++|+..+ ++..+.| .+.+.++... ........++|||+|||+++++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3466789999999999999999999 9999999 9999887641 1223345689999999999999
Q ss_pred HHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceeeeeccccc
Q 015870 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190 (399)
Q Consensus 126 ~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~ 190 (399)
++|+++|+.||.|..+.+..+ ++|+|||+|.+.++|..|+..|++..+.|+.|.|.+..++
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999876 5889999999999999999999999999999999887543
No 113
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=126.84 Aligned_cols=92 Identities=26% Similarity=0.456 Sum_probs=83.3
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~-~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 90 (399)
+....+....+.++|||+|||+++++++|+++|++|| |.++.++.+..+ +.++|||||+|.+.++|++|+ .|++..+
T Consensus 4 g~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~ 81 (104)
T 1wi8_A 4 GSSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL 81 (104)
T ss_dssp CCCCCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE
T ss_pred CCCCCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe
Confidence 3445556677889999999999999999999999999 999999999887 899999999999999999999 8999999
Q ss_pred CCcccEEeeccCCcc
Q 015870 91 NGKPIRVMYSHRDPS 105 (399)
Q Consensus 91 ~g~~i~v~~~~~~~~ 105 (399)
.|+.|.|.++.....
T Consensus 82 ~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 82 GNKRIRVDVADQAQD 96 (104)
T ss_dssp TTEECEEEECCCCCC
T ss_pred CCcEEEEEEccCCCC
Confidence 999999999976544
No 114
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=6.3e-19 Score=130.89 Aligned_cols=85 Identities=28% Similarity=0.495 Sum_probs=80.1
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
.+.++|||+|||+.+++++|+++|++||.|.++++..+.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|.+|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred ecHHH
Q 015870 383 RKEDR 387 (399)
Q Consensus 383 ~~~~~ 387 (399)
++..+
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76543
No 115
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-19 Score=130.48 Aligned_cols=87 Identities=32% Similarity=0.559 Sum_probs=80.6
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||+.+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|++.||+..++|++|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999998875 678899999999999999999999999999999999999
Q ss_pred eeecHHHH
Q 015870 381 AQRKEDRR 388 (399)
Q Consensus 381 a~~~~~~~ 388 (399)
++++..++
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 99876544
No 116
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=6.7e-19 Score=131.76 Aligned_cols=85 Identities=26% Similarity=0.370 Sum_probs=79.3
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
+....+.++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|+..||+..+.|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34467789999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred Eeecc
Q 015870 97 VMYSH 101 (399)
Q Consensus 97 v~~~~ 101 (399)
|.+++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 98863
No 117
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=1e-18 Score=128.37 Aligned_cols=83 Identities=29% Similarity=0.485 Sum_probs=78.7
Q ss_pred hccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 301 ~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
...++++|+|+|||+.+++++|+++|++||.|.+++++.+.+|.++|+|||+|.+.++|.+|+..||+..++|+.|+|++
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eee
Q 015870 381 AQR 383 (399)
Q Consensus 381 a~~ 383 (399)
|.+
T Consensus 105 a~s 107 (107)
T 3ulh_A 105 VTS 107 (107)
T ss_dssp ECC
T ss_pred eCC
Confidence 863
No 118
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.9e-19 Score=129.05 Aligned_cols=86 Identities=29% Similarity=0.471 Sum_probs=78.8
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+.++|||+|||+.+++++|+++|++||.|.+|+++.+..+ ++|||||+|.+.++|.+|+..||+..+.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 456789999999999999999999999999999999887544 6899999999999999999999999999999999999
Q ss_pred eecHHHH
Q 015870 382 QRKEDRR 388 (399)
Q Consensus 382 ~~~~~~~ 388 (399)
+++..++
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqi_A 91 TTPSSQK 97 (103)
T ss_dssp CCTTCCC
T ss_pred CCCcccc
Confidence 9876544
No 119
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=126.75 Aligned_cols=86 Identities=28% Similarity=0.458 Sum_probs=79.3
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+.++|||+|||+.+++++|+++|++||.|.+++++.+..+ ++|||||+|.+.++|.+|+..||+..++|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 456789999999999999999999999999999999988654 8999999999999999999999999999999999999
Q ss_pred eecHHHH
Q 015870 382 QRKEDRR 388 (399)
Q Consensus 382 ~~~~~~~ 388 (399)
+++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2cq3_A 91 TARVMTN 97 (103)
T ss_dssp CSSCCCC
T ss_pred ccCCCCC
Confidence 9876543
No 120
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-18 Score=125.60 Aligned_cols=92 Identities=27% Similarity=0.454 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
+.........+.++|||+|||+++++++|+++|++||.|.++.++.+.. .++|||||+|.+.++|.+|+..|++..+.
T Consensus 4 g~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 4 GSSGMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp CSCCCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 3444566778899999999999999999999999999999999998843 36789999999999999999999999999
Q ss_pred CcccEEeeccCCcc
Q 015870 92 GKPIRVMYSHRDPS 105 (399)
Q Consensus 92 g~~i~v~~~~~~~~ 105 (399)
|+.|+|.++.....
T Consensus 82 g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 82 GKEVKVNWATTPSS 95 (103)
T ss_dssp TEEEEEEECCCTTC
T ss_pred CCeEEEEECCCCcc
Confidence 99999999986544
No 121
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=126.14 Aligned_cols=89 Identities=18% Similarity=0.276 Sum_probs=79.8
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS-VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 14 ~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~-i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
++......+.++|||+|||+++++++|+++|++||.|.+ |.++.+ .+|+++|||||+|.+.++|++|+.. ++..+.|
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 6 SGNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp CCCCSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 344556678899999999999999999999999999987 888888 7899999999999999999999997 9999999
Q ss_pred cccEEeeccCCc
Q 015870 93 KPIRVMYSHRDP 104 (399)
Q Consensus 93 ~~i~v~~~~~~~ 104 (399)
+.|.|..+....
T Consensus 84 r~i~v~~~~~~~ 95 (104)
T 1wg5_A 84 RYIEIFKSSRAE 95 (104)
T ss_dssp SCCEEEEECTTT
T ss_pred cEEEEEECCHHH
Confidence 999999886543
No 122
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.9e-19 Score=125.89 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=75.9
Q ss_pred cCCceEEEecCCCcCCHHHHH----HhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 015870 303 FQGANLYIKNLDDSIDDEKLK----QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~----~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 378 (399)
..+++|||+|||+.+++++|+ ++|++||.|.+++++.+..+ +|||||+|.+.++|.+|++.|||..++|++|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 457899999999999999999 99999999999999988765 889999999999999999999999999999999
Q ss_pred EEeeecH
Q 015870 379 ALAQRKE 385 (399)
Q Consensus 379 ~~a~~~~ 385 (399)
++|+++.
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9998764
No 123
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.8e-19 Score=130.08 Aligned_cols=84 Identities=29% Similarity=0.463 Sum_probs=77.9
Q ss_pred hhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 300 ~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
......++|||+|||..+++++|+++|++||.|.++++..+.. .++|||||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456788999999999999999999999999999999988754 489999999999999999999999999999999999
Q ss_pred Eeeec
Q 015870 380 LAQRK 384 (399)
Q Consensus 380 ~a~~~ 384 (399)
+|+++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99976
No 124
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=136.36 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=79.2
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcC--CceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G--~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..++|||+|||+.+++++|+++|++|| .|.+++++.+. +|+++|||||+|.+.++|.+|+..|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999998885 899999999999999999999999999999999999999
Q ss_pred eeecHHHHH
Q 015870 381 AQRKEDRRA 389 (399)
Q Consensus 381 a~~~~~~~~ 389 (399)
|.++..++.
T Consensus 134 a~~~~~~~~ 142 (156)
T 3n9u_C 134 ATRQNLSQF 142 (156)
T ss_dssp CCHHHHHHH
T ss_pred cCCCcchhh
Confidence 998766553
No 125
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=3.1e-19 Score=127.29 Aligned_cols=84 Identities=25% Similarity=0.401 Sum_probs=78.7
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+.++|||+|||..+++++|+++|++||.|.++++.. .++.++|||||+|.+.++|.+|+..||+..++|+.|+|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~-~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM-ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE-SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45678999999999999999999999999999999987 47889999999999999999999999999999999999999
Q ss_pred eecHH
Q 015870 382 QRKED 386 (399)
Q Consensus 382 ~~~~~ 386 (399)
+++..
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 98764
No 126
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=125.78 Aligned_cols=89 Identities=13% Similarity=0.260 Sum_probs=79.3
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 13 ~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
+++....+...++|||+|||+++|+++|+++|++||.+ +|.++.++ +++++|+|||+|.+.++|++|+. +++..+.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g 81 (102)
T 1wez_A 5 SSGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQH 81 (102)
T ss_dssp SCCSSCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 33445667888999999999999999999999999954 99999997 89999999999999999999996 79999999
Q ss_pred cccEEeeccCCc
Q 015870 93 KPIRVMYSHRDP 104 (399)
Q Consensus 93 ~~i~v~~~~~~~ 104 (399)
+.|.|..+....
T Consensus 82 r~i~V~~~~~~~ 93 (102)
T 1wez_A 82 RYVELFLNSTAG 93 (102)
T ss_dssp SCCEEEEECCCC
T ss_pred cEEEEEECCCCC
Confidence 999999876554
No 127
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=1.1e-18 Score=125.26 Aligned_cols=83 Identities=27% Similarity=0.484 Sum_probs=79.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeecc
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (399)
++++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+..|++..+.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 57899999999999999999999999999999999998889999999999999999999999999999999999999997
Q ss_pred CCc
Q 015870 102 RDP 104 (399)
Q Consensus 102 ~~~ 104 (399)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 128
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6e-19 Score=128.92 Aligned_cols=89 Identities=24% Similarity=0.446 Sum_probs=82.1
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
+.++|||+|||+.+++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.+|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999998875 78899999999999999999999999999999999999999
Q ss_pred ecHHHHHHhh
Q 015870 383 RKEDRRARLQ 392 (399)
Q Consensus 383 ~~~~~~~~~~ 392 (399)
++..++...+
T Consensus 87 ~~~~~~~~~~ 96 (104)
T 1p1t_A 87 SEKNKEELKS 96 (104)
T ss_dssp CTTHHHHHHH
T ss_pred Cccchhhhcc
Confidence 8887765543
No 129
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.1e-19 Score=126.95 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=81.1
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcc
Q 015870 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (399)
Q Consensus 15 ~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~ 94 (399)
.........++|||+|||+++++++|+++|.+||.|.++.++.+..++.++|+|||+|.+.++|++|+..|++..|.|+.
T Consensus 7 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 7 GASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp CCCCCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 33445667899999999999999999999999999988888888889999999999999999999999999999999999
Q ss_pred cEEeeccCC
Q 015870 95 IRVMYSHRD 103 (399)
Q Consensus 95 i~v~~~~~~ 103 (399)
|+|.++...
T Consensus 87 l~V~~a~~~ 95 (98)
T 2cqp_A 87 VKLVLGSGP 95 (98)
T ss_dssp CEEEESSCS
T ss_pred EEEEEcCCC
Confidence 999998643
No 130
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=7.4e-19 Score=130.87 Aligned_cols=88 Identities=28% Similarity=0.517 Sum_probs=81.6
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||..+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.||+..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999885 788999999999999999999999999999999999999
Q ss_pred eeecHHHHH
Q 015870 381 AQRKEDRRA 389 (399)
Q Consensus 381 a~~~~~~~~ 389 (399)
|+++...+.
T Consensus 92 a~~~~~~~~ 100 (115)
T 2dgo_A 92 ATRKPPAPK 100 (115)
T ss_dssp SSCCCCCSC
T ss_pred ccCCCCCCc
Confidence 998766543
No 131
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.4e-19 Score=128.68 Aligned_cols=86 Identities=36% Similarity=0.619 Sum_probs=78.6
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCC--C--CcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS--G--ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~--~--~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 378 (399)
.++++|||+|||+.+++++|+++|++||.|.++++..+.. | .++|||||+|.+.++|.+|+..||+..++|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999987653 3 78999999999999999999999999999999999
Q ss_pred EEeeecHHHH
Q 015870 379 ALAQRKEDRR 388 (399)
Q Consensus 379 ~~a~~~~~~~ 388 (399)
++++++...+
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9999876443
No 132
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.5e-19 Score=130.28 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=81.9
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCc-eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSI-TSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v-~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||+.+++++|+++|++||.| .+|+++.+.+|+++|||||+|.+.++|.+|+.. |+..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3467899999999999999999999999999 899999988999999999999999999999976 99999999999999
Q ss_pred eeecHHHHHHh
Q 015870 381 AQRKEDRRARL 391 (399)
Q Consensus 381 a~~~~~~~~~~ 391 (399)
+.++..++...
T Consensus 91 a~~~~~~~~~~ 101 (114)
T 2cpy_A 91 VTLEDMREIEK 101 (114)
T ss_dssp ECHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99888776543
No 133
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=2.9e-19 Score=128.22 Aligned_cols=85 Identities=18% Similarity=0.227 Sum_probs=75.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
...++.++|||+|||+++++++|+++|++||.|.++.++.+..++.++|+|||+|.+.++|++|+..||+..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 44556799999999999999999999999999998999998889999999999999999999999999999999999999
Q ss_pred eeccC
Q 015870 98 MYSHR 102 (399)
Q Consensus 98 ~~~~~ 102 (399)
.++.+
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 98753
No 134
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.2e-19 Score=130.57 Aligned_cols=86 Identities=28% Similarity=0.460 Sum_probs=80.3
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||+.+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|+..||+..++|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4567899999999999999999999999999999998876 788999999999999999999999999999999999999
Q ss_pred eeecHHH
Q 015870 381 AQRKEDR 387 (399)
Q Consensus 381 a~~~~~~ 387 (399)
|+++..+
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9987654
No 135
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=128.31 Aligned_cols=90 Identities=23% Similarity=0.392 Sum_probs=83.5
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeE--------EEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV--------SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~--------~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~ 87 (399)
.+....+.++|||+|||+++++++|+++|++||.|. .+.++.++.++.++|||||+|.+.++|.+|+..|++
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 455678899999999999999999999999999998 699999988999999999999999999999999999
Q ss_pred CCCCCcccEEeeccCCcc
Q 015870 88 TPLNGKPIRVMYSHRDPS 105 (399)
Q Consensus 88 ~~~~g~~i~v~~~~~~~~ 105 (399)
..|.|+.|+|.++.....
T Consensus 88 ~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp CEETTEECEEECSSCCCC
T ss_pred CccCCCEEEEEECCCCCC
Confidence 999999999999876544
No 136
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=2.6e-18 Score=125.93 Aligned_cols=90 Identities=19% Similarity=0.392 Sum_probs=83.0
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC---CC
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL---NG 92 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~---~g 92 (399)
.+..+.+.++|||+|||.++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+..|++..+ .|
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 355677889999999999999999999999999999999999988899999999999999999999999999887 88
Q ss_pred cccEEeeccCCcc
Q 015870 93 KPIRVMYSHRDPS 105 (399)
Q Consensus 93 ~~i~v~~~~~~~~ 105 (399)
+.|.|.++.....
T Consensus 86 ~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 86 RPIQVKPADSESR 98 (106)
T ss_dssp SCCEEEECCCCSC
T ss_pred ceEEEEECCcccc
Confidence 9999999976543
No 137
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.6e-18 Score=127.00 Aligned_cols=89 Identities=28% Similarity=0.396 Sum_probs=81.5
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 015870 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (399)
Q Consensus 14 ~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~ 93 (399)
.+.....+++++|||+|||+++++++|+++|++||.|.++.++.+. ++.++|||||+|.+.++|++|+..|++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 6 SGALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp CCCCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 3445566778999999999999999999999999999999999986 589999999999999999999999999999999
Q ss_pred ccEEeeccCC
Q 015870 94 PIRVMYSHRD 103 (399)
Q Consensus 94 ~i~v~~~~~~ 103 (399)
.|.|.++...
T Consensus 85 ~l~v~~a~~~ 94 (114)
T 2do0_A 85 PMHVKMDERA 94 (114)
T ss_dssp ECEEEECSCC
T ss_pred EEEEEEcccC
Confidence 9999998654
No 138
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-19 Score=130.22 Aligned_cols=87 Identities=22% Similarity=0.459 Sum_probs=80.8
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHh-cCceecCeeEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP--SGISRGSGFVAFSTPEEASRALLEM-NGKMVVSKPLYV 378 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l-~~~~~~g~~l~v 378 (399)
..+.++|||+|||+.+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|+..| |+..++|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 4567899999999999999999999999999999998873 8889999999999999999999999 999999999999
Q ss_pred EEeeecHHHH
Q 015870 379 ALAQRKEDRR 388 (399)
Q Consensus 379 ~~a~~~~~~~ 388 (399)
.||+++...+
T Consensus 92 ~~a~~~~~~~ 101 (107)
T 2cph_A 92 EWADSEVTVQ 101 (107)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9999876543
No 139
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6e-19 Score=128.77 Aligned_cols=85 Identities=24% Similarity=0.434 Sum_probs=78.5
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCC--CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS--GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
..+.++|||+|||+.+++++|+++|++|| |.+|+++.+.. ++++|||||+|.+.++|.+|+ .||+..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45678999999999999999999999999 99999988864 889999999999999999999 999999999999999
Q ss_pred EeeecHHHH
Q 015870 380 LAQRKEDRR 388 (399)
Q Consensus 380 ~a~~~~~~~ 388 (399)
+++++..++
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 999876543
No 140
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=131.00 Aligned_cols=87 Identities=23% Similarity=0.354 Sum_probs=80.2
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||+.+++++|+++|++||.|.++++..+. ++.++|||||+|.+.++|.+|+..||+..++|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999998876 588999999999999999999999999999999999999
Q ss_pred eeecHHHH
Q 015870 381 AQRKEDRR 388 (399)
Q Consensus 381 a~~~~~~~ 388 (399)
|++++.+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2dnm_A 90 ARYGRRDL 97 (103)
T ss_dssp CSSCCSCC
T ss_pred CCcCCCCC
Confidence 99776543
No 141
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=6.1e-18 Score=123.70 Aligned_cols=88 Identities=23% Similarity=0.338 Sum_probs=80.4
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC---c
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG---K 93 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g---~ 93 (399)
.....++++|||+|||+++++++|+++|++||.|.++.++.+. ++.++|||||+|.+.++|.+|+..|++..+.| +
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 9 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 3345678999999999999999999999999999999999987 78999999999999999999999999999988 9
Q ss_pred ccEEeeccCCcc
Q 015870 94 PIRVMYSHRDPS 105 (399)
Q Consensus 94 ~i~v~~~~~~~~ 105 (399)
.|.|.++.....
T Consensus 88 ~l~V~~a~~~~~ 99 (105)
T 2dnh_A 88 SLVVKFADTDKE 99 (105)
T ss_dssp CCEEEESCSSCC
T ss_pred cEEEEECccCcc
Confidence 999999976543
No 142
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=123.84 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=77.5
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
....++|+|+|||+.++++||+++|++| .|.+++++.+.+|+++|+|||+|.+.++|.+|+. +|+..++|+.|+|.+|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3467899999999999999999999999 9999999999889999999999999999999999 9999999999999999
Q ss_pred eecH
Q 015870 382 QRKE 385 (399)
Q Consensus 382 ~~~~ 385 (399)
+++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8764
No 143
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=129.91 Aligned_cols=85 Identities=31% Similarity=0.528 Sum_probs=79.5
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+.++|||+|||+.+++++|+++|++||.|.+++++.+.++.++|||||+|.+.++|.+|+..||+..++|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 34678999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred eecHH
Q 015870 382 QRKED 386 (399)
Q Consensus 382 ~~~~~ 386 (399)
+....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 85443
No 144
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=5.4e-19 Score=132.37 Aligned_cols=89 Identities=22% Similarity=0.302 Sum_probs=78.8
Q ss_pred ccCCceEEEecCCCcCCHHHHH----HhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLK----QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~----~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 377 (399)
..++++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|..|+..|||..+.|++|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 4567899999999999999876 6899999999988754 578899999999999999999999999999999999
Q ss_pred EEEeeecHHHHHHhh
Q 015870 378 VALAQRKEDRRARLQ 392 (399)
Q Consensus 378 v~~a~~~~~~~~~~~ 392 (399)
|.||+++.......+
T Consensus 104 V~~a~~~~~~~~~~~ 118 (127)
T 2a3j_A 104 ITFSETPQSQVAEDG 118 (127)
T ss_dssp EEECCCCCHHHHCC-
T ss_pred EEEccCcchhccccc
Confidence 999998877665443
No 145
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=1.8e-18 Score=127.09 Aligned_cols=86 Identities=29% Similarity=0.486 Sum_probs=79.3
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcc
Q 015870 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (399)
Q Consensus 15 ~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~ 94 (399)
..+....++++|||+|||+++++++|+++|++||.|.++.++.+. ++.++|+|||+|.+.++|++|+..|++..+.|+.
T Consensus 21 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 21 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp ---CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 345667889999999999999999999999999999999999997 8999999999999999999999999999999999
Q ss_pred cEEeecc
Q 015870 95 IRVMYSH 101 (399)
Q Consensus 95 i~v~~~~ 101 (399)
|+|.++.
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9999875
No 146
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=4.6e-19 Score=125.34 Aligned_cols=83 Identities=20% Similarity=0.400 Sum_probs=76.0
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCC--CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS--GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
.+++|+|+|||+.+++++|+++|++||.|.+++++.+.. ++++|+|||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999987763 337999999999999999999999999999999999999
Q ss_pred eecHH
Q 015870 382 QRKED 386 (399)
Q Consensus 382 ~~~~~ 386 (399)
++..+
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 147
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=125.55 Aligned_cols=82 Identities=22% Similarity=0.439 Sum_probs=76.8
Q ss_pred hccCCceEEEecCCCcCCHHHHHHhhcCcCCceE--------EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCcee
Q 015870 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITS--------CKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV 371 (399)
Q Consensus 301 ~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~--------v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 371 (399)
..++.++|||+|||+.+++++|+++|++||.|.+ ++++.+. +|+++|||||+|.+.++|.+|++.|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3457789999999999999999999999999999 9998874 789999999999999999999999999999
Q ss_pred cCeeEEEEEee
Q 015870 372 VSKPLYVALAQ 382 (399)
Q Consensus 372 ~g~~l~v~~a~ 382 (399)
+|+.|+|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999985
No 148
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=1.3e-18 Score=129.64 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=79.4
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCC---ceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS---ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~---v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
...++|||+|||+.++++||+++|++||. |.+|+++.+.+|+++|||||+|.+.++|.+|+. +|+..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45688999999999999999999999998 899999998889999999999999999999998 99999999999999
Q ss_pred EeeecHHHHH
Q 015870 380 LAQRKEDRRA 389 (399)
Q Consensus 380 ~a~~~~~~~~ 389 (399)
++.+++.++.
T Consensus 94 ~a~~~~~~~~ 103 (118)
T 2db1_A 94 KSHRTEMDWV 103 (118)
T ss_dssp EECHHHHHHH
T ss_pred ECCHHHHHHH
Confidence 9987665443
No 149
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-19 Score=131.97 Aligned_cols=89 Identities=33% Similarity=0.496 Sum_probs=82.4
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcC-cCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCce-ecCeeEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSP-FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM-VVSKPLYVA 379 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~-~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g~~l~v~ 379 (399)
..+.++|||+|||+.+++++|+++|++ ||.|.+++++.+.++.++|||||+|.+.++|.+|+..||+.. ++|++|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 346789999999999999999999999 999999999998889999999999999999999999999999 999999999
Q ss_pred EeeecHHHHHH
Q 015870 380 LAQRKEDRRAR 390 (399)
Q Consensus 380 ~a~~~~~~~~~ 390 (399)
+++++..++..
T Consensus 86 ~a~~~~~~~~~ 96 (104)
T 2dhg_A 86 VAIPKASRVKP 96 (104)
T ss_dssp BCCCCCSCCCC
T ss_pred EccCCCcCCCC
Confidence 99987765543
No 150
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=134.54 Aligned_cols=94 Identities=30% Similarity=0.515 Sum_probs=84.4
Q ss_pred cCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 015870 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (399)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~ 86 (399)
.+++.++++......+.++|||+|||.++++++|+++|++||.|.++.++.++.++.++|+|||+|.+.++|.+|+..|+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 126 (140)
T 2ku7_A 47 DGGSGGSGGSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 126 (140)
T ss_dssp CCCSCSSCSSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST
T ss_pred CCCCCCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 34444555556677889999999999999999999999999999999999998899999999999999999999999999
Q ss_pred CCCCCCcccEEeec
Q 015870 87 FTPLNGKPIRVMYS 100 (399)
Q Consensus 87 ~~~~~g~~i~v~~~ 100 (399)
+..+.|+.|+|.++
T Consensus 127 g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 127 ESELFGRTIRVNLA 140 (140)
T ss_dssp EEEETTEEEEEEC-
T ss_pred CCEECCEEEEEEeC
Confidence 99999999999864
No 151
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.6e-19 Score=127.96 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=73.8
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCc--eecCeeEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK--MVVSKPLYVA 379 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~l~v~ 379 (399)
..++++|||+|||+.+++++|+++|++||.|.++.+++. +|||||+|++.++|.+|++.|++. .+.|++|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 457789999999999999999999999999999998764 789999999999999999998754 5899999999
Q ss_pred EeeecHHHH
Q 015870 380 LAQRKEDRR 388 (399)
Q Consensus 380 ~a~~~~~~~ 388 (399)
|++++..++
T Consensus 87 ~a~~~~~~~ 95 (104)
T 1wex_A 87 YSTSKRITR 95 (104)
T ss_dssp ECSSSSCCC
T ss_pred EccCccccC
Confidence 999876543
No 152
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=124.99 Aligned_cols=89 Identities=33% Similarity=0.471 Sum_probs=82.1
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhc-cCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC-CCCc
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQ-MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP-LNGK 93 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~-~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~-~~g~ 93 (399)
...++.++++|||+|||+++++++|+++|++ ||.|.++.++.+. ++.++|||||+|.+.++|.+|+..|++.. +.|+
T Consensus 2 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 2 SSGSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp CCCCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 3456678899999999999999999999999 9999999999997 89999999999999999999999999999 9999
Q ss_pred ccEEeeccCCcc
Q 015870 94 PIRVMYSHRDPS 105 (399)
Q Consensus 94 ~i~v~~~~~~~~ 105 (399)
.|.|.++.....
T Consensus 81 ~l~v~~a~~~~~ 92 (104)
T 2dhg_A 81 PVRLSVAIPKAS 92 (104)
T ss_dssp CCCCCBCCCCCS
T ss_pred eEEEEEccCCCc
Confidence 999999875543
No 153
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=1.5e-18 Score=122.24 Aligned_cols=84 Identities=27% Similarity=0.480 Sum_probs=76.2
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
.+..+.+.++|||+|||+++++++|+++|++||.|.++.++.+..++.++|+|||+|.+.++|.+|+. +++..+.|+.|
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 82 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVI 82 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEE
Confidence 45667889999999999999999999999999999999999998899999999999999999999997 47788999999
Q ss_pred EEeec
Q 015870 96 RVMYS 100 (399)
Q Consensus 96 ~v~~~ 100 (399)
.|.++
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99764
No 154
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=125.10 Aligned_cols=86 Identities=29% Similarity=0.627 Sum_probs=80.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEE-EEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i-~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
+.++++|||+|||+++++++|+++|++||.|.++ .++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3468999999999999999999999999999999 999998899999999999999999999999999999999999999
Q ss_pred eccCCcc
Q 015870 99 YSHRDPS 105 (399)
Q Consensus 99 ~~~~~~~ 105 (399)
++.....
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9976543
No 155
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=3.7e-19 Score=134.50 Aligned_cols=85 Identities=25% Similarity=0.334 Sum_probs=79.5
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||+.+++++|+++|++||.|.+++++.+. +++++|||||+|.+.++|.+|+..|||..|+|++|+|+|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999998875 688999999999999999999999999999999999999
Q ss_pred eeecHH
Q 015870 381 AQRKED 386 (399)
Q Consensus 381 a~~~~~ 386 (399)
+++++.
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 998763
No 156
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=5.3e-19 Score=125.20 Aligned_cols=82 Identities=20% Similarity=0.381 Sum_probs=72.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeecc
Q 015870 24 TSLYVGDLEANVTDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~~~g--~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (399)
.+|||+|||+++++++|+++|++|| .|.++.++.++.+|.++|||||+|.+.++|.+|+..||+..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred CCcc
Q 015870 102 RDPS 105 (399)
Q Consensus 102 ~~~~ 105 (399)
+.+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 157
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.7e-18 Score=127.84 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=83.3
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 13 ~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
..+.+....++++|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+..|++..+.|
T Consensus 16 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 95 (110)
T 1oo0_B 16 LEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 95 (110)
T ss_dssp --CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34456667888999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cccEEeeccCC
Q 015870 93 KPIRVMYSHRD 103 (399)
Q Consensus 93 ~~i~v~~~~~~ 103 (399)
+.|.|.++...
T Consensus 96 ~~l~V~~a~~~ 106 (110)
T 1oo0_B 96 QTIQVDWCFVK 106 (110)
T ss_dssp EECEEEESEES
T ss_pred cEEEEEEcccC
Confidence 99999998754
No 158
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.2e-19 Score=130.94 Aligned_cols=87 Identities=26% Similarity=0.482 Sum_probs=80.4
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhc------CceecCe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMN------GKMVVSK 374 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~------~~~~~g~ 374 (399)
..+.++|||+|||+.+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|+..|| +..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3467899999999999999999999999999999998875 68899999999999999999999999 9999999
Q ss_pred eEEEEEeeecHHHH
Q 015870 375 PLYVALAQRKEDRR 388 (399)
Q Consensus 375 ~l~v~~a~~~~~~~ 388 (399)
.|+|.|++++..++
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999999876544
No 159
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=8.2e-19 Score=132.94 Aligned_cols=85 Identities=16% Similarity=0.188 Sum_probs=78.7
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCC---ceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS---ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~---v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
...++|||+|||++++++||+++|++||. |.+|+++.+.+|+++|||||+|.+.++|.+|+. +|+..++||.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45688999999999999999999999999 899999998889999999999999999999998 99999999999999
Q ss_pred EeeecHHHH
Q 015870 380 LAQRKEDRR 388 (399)
Q Consensus 380 ~a~~~~~~~ 388 (399)
++.+++.++
T Consensus 121 ~a~~~e~~~ 129 (136)
T 2hgl_A 121 KSHRTEMDW 129 (136)
T ss_dssp ECCHHHHHH
T ss_pred ECChHHHHH
Confidence 998666443
No 160
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=8e-19 Score=133.93 Aligned_cols=91 Identities=26% Similarity=0.430 Sum_probs=83.7
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcc
Q 015870 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (399)
Q Consensus 15 ~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~ 94 (399)
..+....++++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.
T Consensus 39 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 39 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 33555777889999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred cEEeeccCCcc
Q 015870 95 IRVMYSHRDPS 105 (399)
Q Consensus 95 i~v~~~~~~~~ 105 (399)
|+|.++.....
T Consensus 119 l~V~~a~~~~~ 129 (135)
T 2lea_A 119 LRVQMARYGRP 129 (135)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999976543
No 161
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=124.25 Aligned_cols=86 Identities=23% Similarity=0.505 Sum_probs=79.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS---TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~---~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
..++++|||+|||+++++++|+++|++||+|.++.+..+.. ++.++|||||+|.+.++|.+|+..|++..+.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35789999999999999999999999999999999998876 568899999999999999999999999999999999
Q ss_pred EeeccCCcc
Q 015870 97 VMYSHRDPS 105 (399)
Q Consensus 97 v~~~~~~~~ 105 (399)
|.++.....
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999976544
No 162
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=1.2e-18 Score=126.82 Aligned_cols=85 Identities=20% Similarity=0.365 Sum_probs=78.3
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||+.+++++|+++|++|| |.+++++.+. +++++|||||+|.+.++|.+|+ .||+..++|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45678999999999999999999999997 9999999886 5889999999999999999999 8999999999999999
Q ss_pred eeecHHHH
Q 015870 381 AQRKEDRR 388 (399)
Q Consensus 381 a~~~~~~~ 388 (399)
++++..++
T Consensus 90 a~~~~~~~ 97 (103)
T 2dng_A 90 AEGRKQDK 97 (103)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 99876543
No 163
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=5.3e-18 Score=130.83 Aligned_cols=89 Identities=29% Similarity=0.414 Sum_probs=83.2
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
....+...++|||+|||.++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|
T Consensus 35 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 35 MNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp SSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34557788999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEeeccCCc
Q 015870 96 RVMYSHRDP 104 (399)
Q Consensus 96 ~v~~~~~~~ 104 (399)
+|.++....
T Consensus 115 ~v~~a~~~~ 123 (139)
T 1u6f_A 115 KVALAASGH 123 (139)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 999987654
No 164
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=3.3e-18 Score=115.93 Aligned_cols=74 Identities=24% Similarity=0.305 Sum_probs=69.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
..+..|+|+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4688999999999999999999999999999999865 4689999999999999999999999999999999877
No 165
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=5.6e-18 Score=120.71 Aligned_cols=86 Identities=28% Similarity=0.412 Sum_probs=78.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
....+.++|||+|||+++++++|+++|++||.|.++.+..+ ++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 44567899999999999999999999999999999999874 7889999999999999999999999999999999999
Q ss_pred eeccCCcc
Q 015870 98 MYSHRDPS 105 (399)
Q Consensus 98 ~~~~~~~~ 105 (399)
.++.....
T Consensus 81 ~~a~~~~~ 88 (92)
T 2dgv_A 81 RIDRNASG 88 (92)
T ss_dssp EECSCCSS
T ss_pred EEcCCCCC
Confidence 99876543
No 166
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=124.17 Aligned_cols=83 Identities=17% Similarity=0.319 Sum_probs=77.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
......++|||+|||+++|+++|+++|++||+|.+|.++.+.. +.++|||||+|.+.++|.+|+. +++..+.|+.|.|
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V 83 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLI 83 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEE
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEE
Confidence 3456789999999999999999999999999999999999976 9999999999999999999999 8999999999999
Q ss_pred eeccC
Q 015870 98 MYSHR 102 (399)
Q Consensus 98 ~~~~~ 102 (399)
.++..
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 98654
No 167
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.4e-18 Score=123.00 Aligned_cols=81 Identities=21% Similarity=0.429 Sum_probs=76.1
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
..++|||+|||+.+++++|+++|++||.|.+++++.+. ++.++|+|||+|.+.++|.+|+ .+|+..++|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 35799999999999999999999999999999999885 7889999999999999999999 999999999999999998
Q ss_pred ecH
Q 015870 383 RKE 385 (399)
Q Consensus 383 ~~~ 385 (399)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 753
No 168
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=1.4e-18 Score=125.48 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=78.3
Q ss_pred CCCccEEEEcCCCC------CCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC-
Q 015870 20 QFGTTSLYVGDLEA------NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG- 92 (399)
Q Consensus 20 ~~~~~~l~v~nLP~------~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g- 92 (399)
...+++|||+|||. ++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+..||+..+.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEeeccC
Q 015870 93 KPIRVMYSHR 102 (399)
Q Consensus 93 ~~i~v~~~~~ 102 (399)
+.|+|.++.+
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 9999998854
No 169
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.4e-18 Score=123.52 Aligned_cols=93 Identities=17% Similarity=0.323 Sum_probs=81.2
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC
Q 015870 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (399)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~ 89 (399)
...+...+....+.++|||+|||+++++++|+++|++||.|.++.+..+ +.++|||||+|.+.++|++|+..|++..
T Consensus 9 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~ 85 (109)
T 1x4a_A 9 SGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYD 85 (109)
T ss_dssp CCCCCSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 3344445666788999999999999999999999999999999999654 4578999999999999999999999999
Q ss_pred CCCcccEEeeccCCcc
Q 015870 90 LNGKPIRVMYSHRDPS 105 (399)
Q Consensus 90 ~~g~~i~v~~~~~~~~ 105 (399)
|.|+.|+|.++.....
T Consensus 86 ~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 86 YDGYRLRVEFPRSGRG 101 (109)
T ss_dssp ETTEECEEECCCCCCC
T ss_pred ECCeEEEEEEcccCCC
Confidence 9999999999876543
No 170
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=127.59 Aligned_cols=83 Identities=23% Similarity=0.354 Sum_probs=76.6
Q ss_pred cCCceEEEecCCCcCCHHHHH---HhhcCcCCceEEEEeeCCC----CCcccEEEEEeCCHHHHHHHHHHhcCceecCee
Q 015870 303 FQGANLYIKNLDDSIDDEKLK---QLFSPFGSITSCKVMRDPS----GISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~---~~f~~~G~v~~v~~~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 375 (399)
...++|||+|||+.+++++|+ ++|++||.|.+++++.+.. ++++|||||+|.+.++|.+|++.|||..++|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 456899999999999999999 9999999999999987752 356799999999999999999999999999999
Q ss_pred EEEEEeeecH
Q 015870 376 LYVALAQRKE 385 (399)
Q Consensus 376 l~v~~a~~~~ 385 (399)
|+|.||+++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999999876
No 171
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=5.3e-18 Score=125.85 Aligned_cols=85 Identities=25% Similarity=0.457 Sum_probs=79.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
+..+.++|||+|||+++++++|+++|++||.|.++.++.+. ++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred eccCCc
Q 015870 99 YSHRDP 104 (399)
Q Consensus 99 ~~~~~~ 104 (399)
++....
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 987553
No 172
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=122.81 Aligned_cols=82 Identities=15% Similarity=0.301 Sum_probs=73.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CCCCCccc
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF--TPLNGKPI 95 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~--~~~~g~~i 95 (399)
..+.++++|||+|||+++++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|+..+++ ..+.|++|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 45678899999999999999999999999999999999865 47999999999999999998864 67999999
Q ss_pred EEeeccCCcc
Q 015870 96 RVMYSHRDPS 105 (399)
Q Consensus 96 ~v~~~~~~~~ 105 (399)
.|.++.....
T Consensus 85 ~V~~A~~~~~ 94 (105)
T 1sjq_A 85 YIQFSNHKEL 94 (105)
T ss_dssp CBCCCSSSSC
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 173
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=126.97 Aligned_cols=88 Identities=30% Similarity=0.515 Sum_probs=82.1
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
+....+.++|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 2 p~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp CCSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 44566789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EeeccCCc
Q 015870 97 VMYSHRDP 104 (399)
Q Consensus 97 v~~~~~~~ 104 (399)
|.++....
T Consensus 82 v~~a~~~~ 89 (104)
T 1p1t_A 82 VDNAASEK 89 (104)
T ss_dssp EEETTCTT
T ss_pred EEeCCCcc
Confidence 99987653
No 174
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=127.99 Aligned_cols=84 Identities=19% Similarity=0.312 Sum_probs=76.9
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+.++|||+|||+.+++++|+++|++||.|.++++... +.++|||||+|.+.++|.+|++.||+..++|+.|+|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 346789999999999999999999999999999998654 567999999999999999999999999999999999999
Q ss_pred eecHHH
Q 015870 382 QRKEDR 387 (399)
Q Consensus 382 ~~~~~~ 387 (399)
++++.+
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987644
No 175
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.7e-19 Score=129.80 Aligned_cols=87 Identities=24% Similarity=0.431 Sum_probs=80.2
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCce--------EEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT--------SCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~--------~v~~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 372 (399)
..+.++|||+|||+.+++++|+++|++||.|. .++++.+ .+++++|||||+|.+.++|.+|+..||+..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34678999999999999999999999999999 6998887 57899999999999999999999999999999
Q ss_pred CeeEEEEEeeecHHHH
Q 015870 373 SKPLYVALAQRKEDRR 388 (399)
Q Consensus 373 g~~l~v~~a~~~~~~~ 388 (399)
|+.|+|.+++++..+.
T Consensus 92 g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 92 GSKLKVSLARKKPPMN 107 (113)
T ss_dssp TEECEEECSSCCCCST
T ss_pred CCEEEEEECCCCCCCC
Confidence 9999999999876543
No 176
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.2e-18 Score=122.82 Aligned_cols=91 Identities=24% Similarity=0.398 Sum_probs=81.9
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 13 ~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
+.+......+.++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|+. ++..+.|
T Consensus 5 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g 82 (103)
T 2cqg_A 5 SSGVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG 82 (103)
T ss_dssp CSSCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT
T ss_pred CCCCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC
Confidence 34455667788999999999999999999999999999999999998899999999999999999999998 4678999
Q ss_pred cccEEeeccCCcc
Q 015870 93 KPIRVMYSHRDPS 105 (399)
Q Consensus 93 ~~i~v~~~~~~~~ 105 (399)
+.|.|.++.....
T Consensus 83 ~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 83 RWCDCKLPNSKQS 95 (103)
T ss_dssp EEEEEECCCTTCC
T ss_pred eEEEEEecCCCCc
Confidence 9999999876544
No 177
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=1.9e-18 Score=126.35 Aligned_cols=82 Identities=26% Similarity=0.587 Sum_probs=73.4
Q ss_pred hhhccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 015870 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (399)
Q Consensus 299 ~~~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 378 (399)
.....++++|||+|||+.+++++|+++|++||.|.++++. +|||||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445678999999999999999999999999999999987 579999999999999999999999999999999
Q ss_pred EEeeecHHH
Q 015870 379 ALAQRKEDR 387 (399)
Q Consensus 379 ~~a~~~~~~ 387 (399)
.|++++..+
T Consensus 98 ~~a~~~~~r 106 (108)
T 2jvo_A 98 VYSKLPAKR 106 (108)
T ss_dssp ESCSCCC--
T ss_pred EEecCCCCC
Confidence 999987654
No 178
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=4.4e-19 Score=128.24 Aligned_cols=82 Identities=21% Similarity=0.411 Sum_probs=74.6
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP--SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
....++|||+|||+.+++++|+++|++|| |.++++..+. +|+++|||||+|.+.++|.+|+ .|||..++|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45678999999999999999999999999 9999998885 7899999999999999999999 999999999999999
Q ss_pred EeeecH
Q 015870 380 LAQRKE 385 (399)
Q Consensus 380 ~a~~~~ 385 (399)
+|+++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 999764
No 179
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.7e-18 Score=124.26 Aligned_cols=87 Identities=23% Similarity=0.301 Sum_probs=77.5
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
++++.++..+..++|||+|||+++++++|+++|++||.|.++.++.+ |||||+|.+.++|++|+..||+..|.
T Consensus 4 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~ 76 (108)
T 1x4c_A 4 GSSGGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFR 76 (108)
T ss_dssp CCCSSCCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEE
T ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCcc
Confidence 33444556788999999999999999999999999999999999875 69999999999999999999999999
Q ss_pred C-----cccEEeeccCCcc
Q 015870 92 G-----KPIRVMYSHRDPS 105 (399)
Q Consensus 92 g-----~~i~v~~~~~~~~ 105 (399)
| +.|+|.++.+...
T Consensus 77 g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 77 SHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp CTTSCEEEEEEEESSCCSC
T ss_pred CCcCcceEEEEEeCCCCCC
Confidence 9 9999999876543
No 180
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=125.64 Aligned_cols=84 Identities=25% Similarity=0.446 Sum_probs=78.6
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCce-EEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCee----
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT-SCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP---- 375 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~-~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~---- 375 (399)
..++++|||+|||+.+++++|+++|++||.|. +++++.+. ++.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45678999999999999999999999999999 99998885 7889999999999999999999999999999999
Q ss_pred EEEEEeeecH
Q 015870 376 LYVALAQRKE 385 (399)
Q Consensus 376 l~v~~a~~~~ 385 (399)
|+|.||++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998754
No 181
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-18 Score=123.58 Aligned_cols=79 Identities=18% Similarity=0.402 Sum_probs=74.4
Q ss_pred CceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeec
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 384 (399)
..+|+|+|||+.++++||+++|++| .|.+|+|+.+.+|+++|||||+|.+.++|.+|+ .+|+..++||.|.|..+.++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4689999999999999999999999 899999999888999999999999999999999 79999999999999998765
Q ss_pred H
Q 015870 385 E 385 (399)
Q Consensus 385 ~ 385 (399)
.
T Consensus 94 ~ 94 (109)
T 2dnn_A 94 Q 94 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 182
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.6e-19 Score=127.11 Aligned_cols=81 Identities=21% Similarity=0.297 Sum_probs=72.7
Q ss_pred ccCCceEEEecCCCc-CCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC--ceecCeeEEE
Q 015870 302 KFQGANLYIKNLDDS-IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG--KMVVSKPLYV 378 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~-~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~~g~~l~v 378 (399)
..++++|||+|||++ ++++||+++|++||.|.++++++. +|||||+|++.++|.+|++.|++ ..+.|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999998 999999999999999999999754 79999999999999999998864 5699999999
Q ss_pred EEeeecHHH
Q 015870 379 ALAQRKEDR 387 (399)
Q Consensus 379 ~~a~~~~~~ 387 (399)
.||+.+...
T Consensus 97 ~~a~~~~~~ 105 (112)
T 1x4f_A 97 DLSEKYKKL 105 (112)
T ss_dssp EEECSCSSS
T ss_pred EECcccccc
Confidence 999876643
No 183
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=4.5e-18 Score=128.86 Aligned_cols=93 Identities=24% Similarity=0.325 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
+..+.+....++++|||+|||+++++++|+++|++||.|.+|.++.+..++.++|+|||+|.+.++|.+|+..|++..|.
T Consensus 11 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 11 GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp ---CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 34555667788999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CcccEEeeccCCc
Q 015870 92 GKPIRVMYSHRDP 104 (399)
Q Consensus 92 g~~i~v~~~~~~~ 104 (399)
|+.|.|.++....
T Consensus 91 g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 91 GQPISVDWCFVRG 103 (126)
T ss_dssp SSBCEEEESEESS
T ss_pred CeEEEEEEecCCC
Confidence 9999999987543
No 184
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=8.6e-19 Score=128.52 Aligned_cols=86 Identities=24% Similarity=0.522 Sum_probs=79.5
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCcee---cCeeEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV---VSKPLY 377 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~~l~ 377 (399)
..+.++|||+|||..+++++|+++|++||.|.+++++.+. +++++|||||+|.+.++|.+|+..||+..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 4567899999999999999999999999999999998876 588999999999999999999999999998 899999
Q ss_pred EEEeeecHHH
Q 015870 378 VALAQRKEDR 387 (399)
Q Consensus 378 v~~a~~~~~~ 387 (399)
|.+++++..+
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999987643
No 185
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.9e-18 Score=129.25 Aligned_cols=81 Identities=38% Similarity=0.596 Sum_probs=75.7
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||+.+++++|+++|++||.|.+++++.+. +|+++|||||+|.+.++|.+|++.|||..++|++|+|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999998874 688999999999999999999999999999999999999
Q ss_pred ee
Q 015870 381 AQ 382 (399)
Q Consensus 381 a~ 382 (399)
+|
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 86
No 186
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=1.6e-18 Score=127.17 Aligned_cols=85 Identities=29% Similarity=0.498 Sum_probs=75.5
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||+.+++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|+..+ +..++|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 4567899999999999999999999999999999998886 5889999999999999999999876 5999999999999
Q ss_pred eeecHHH
Q 015870 381 AQRKEDR 387 (399)
Q Consensus 381 a~~~~~~ 387 (399)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987643
No 187
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=1e-18 Score=125.88 Aligned_cols=87 Identities=34% Similarity=0.507 Sum_probs=78.8
Q ss_pred ccCCceEEEecCCCcCCHHHHH----HhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLK----QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~----~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 377 (399)
..++++|||+|||..+++++|+ ++|++||.|.++++.. +|.++|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 4578899999999999999999 9999999999998874 466789999999999999999999999999999999
Q ss_pred EEEeeecHHHHHH
Q 015870 378 VALAQRKEDRRAR 390 (399)
Q Consensus 378 v~~a~~~~~~~~~ 390 (399)
|+|++++.....+
T Consensus 83 v~~a~~~~~~~~k 95 (97)
T 1nu4_A 83 IQYAKTDSDIIAK 95 (97)
T ss_dssp EEECSSCCTHHHH
T ss_pred EEEccCCCccccc
Confidence 9999988766544
No 188
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=127.70 Aligned_cols=83 Identities=22% Similarity=0.454 Sum_probs=77.6
Q ss_pred CceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeee
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 383 (399)
.++|||+|||..+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|+ .||+..|+|+.|+|.++++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 4789999999999999999999999999999998876 4889999999999999999999 9999999999999999998
Q ss_pred cHHHH
Q 015870 384 KEDRR 388 (399)
Q Consensus 384 ~~~~~ 388 (399)
+..+.
T Consensus 104 ~~~~~ 108 (114)
T 2cq4_A 104 EKNRL 108 (114)
T ss_dssp HHHHH
T ss_pred CccCC
Confidence 76554
No 189
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=4.6e-18 Score=128.28 Aligned_cols=84 Identities=29% Similarity=0.456 Sum_probs=79.3
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
...+++|||+|||..+++++|+++|++||.|.++++..+.+|+++|||||+|.+.++|.+|+..|||..++|+.|+|++|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 34678999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred eecH
Q 015870 382 QRKE 385 (399)
Q Consensus 382 ~~~~ 385 (399)
.+..
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 8754
No 190
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=1.5e-18 Score=124.43 Aligned_cols=82 Identities=17% Similarity=0.340 Sum_probs=73.1
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
.++.++|||+|||+.++++||+++|++||.|..++++.+ .+++++|||||+|.+.++|.+|++.||+..++|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 345689999999999999999999999999988877665 4788999999999999999999999999999999999999
Q ss_pred eee
Q 015870 381 AQR 383 (399)
Q Consensus 381 a~~ 383 (399)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 874
No 191
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=2.2e-18 Score=125.60 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=72.1
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcC-CceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G-~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
...++|||+|||+.++++||+++|++|| .|..+++... .++|||||+|.+.++|.+|+..|||..++|+.|+|.++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3567999999999999999999999999 8999988543 46899999999999999999999999999999999999
Q ss_pred eecHHH
Q 015870 382 QRKEDR 387 (399)
Q Consensus 382 ~~~~~~ 387 (399)
+.....
T Consensus 103 ~~~p~~ 108 (111)
T 2jvr_A 103 DNPPPI 108 (111)
T ss_dssp CC----
T ss_pred CCCCCC
Confidence 866443
No 192
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=1.3e-18 Score=131.84 Aligned_cols=87 Identities=21% Similarity=0.423 Sum_probs=80.6
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..++++|||+|||+.+++++|+++|++||.|.+|.++.+. ++.++|||||+|.+.++|.+|++.||+..|+|+.|+|+|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4567899999999999999999999999999999998875 788999999999999999999999999999999999999
Q ss_pred eeecHHHH
Q 015870 381 AQRKEDRR 388 (399)
Q Consensus 381 a~~~~~~~ 388 (399)
|+++..++
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 99776544
No 193
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.8e-19 Score=129.60 Aligned_cols=87 Identities=24% Similarity=0.419 Sum_probs=80.8
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||+.+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|+.. ++..|+|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 4577899999999999999999999999999999998884 788999999999999999999988 99999999999999
Q ss_pred eeecHHHHH
Q 015870 381 AQRKEDRRA 389 (399)
Q Consensus 381 a~~~~~~~~ 389 (399)
++++.+++.
T Consensus 92 a~~~~~~~~ 100 (105)
T 2dh8_A 92 CTPRGMQPS 100 (105)
T ss_dssp SCCSSCCTT
T ss_pred ccCCCCCCC
Confidence 998876554
No 194
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=8.1e-18 Score=126.94 Aligned_cols=88 Identities=26% Similarity=0.452 Sum_probs=81.8
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcc
Q 015870 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (399)
Q Consensus 15 ~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~ 94 (399)
+.+....++++|||+|||+++++++|+++|++||.|.++.+..+. +|.++|+|||+|.+.++|.+|+..|++..+.|+.
T Consensus 27 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 27 GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp CCCCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 334567888999999999999999999999999999999999997 8999999999999999999999999999999999
Q ss_pred cEEeeccCC
Q 015870 95 IRVMYSHRD 103 (399)
Q Consensus 95 i~v~~~~~~ 103 (399)
|+|.++...
T Consensus 106 l~V~~a~~~ 114 (124)
T 2kt5_A 106 MDIQLVASQ 114 (124)
T ss_dssp EEEEEECCT
T ss_pred EEEEEeCCC
Confidence 999998764
No 195
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.6e-18 Score=120.32 Aligned_cols=86 Identities=23% Similarity=0.428 Sum_probs=79.4
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
....+...++|+|+|||+++++++|+++|++| .|.++.++.+ .+|.++|+|||+|.+.++|++|+. +++..+.|+.|
T Consensus 3 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i 79 (91)
T 2dgw_A 3 SGSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI 79 (91)
T ss_dssp CCCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred CCCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence 34556788999999999999999999999999 8999999998 789999999999999999999999 99999999999
Q ss_pred EEeeccCCc
Q 015870 96 RVMYSHRDP 104 (399)
Q Consensus 96 ~v~~~~~~~ 104 (399)
.|.++...+
T Consensus 80 ~v~~a~~~~ 88 (91)
T 2dgw_A 80 EVFREKSGP 88 (91)
T ss_dssp EEEEESSCC
T ss_pred EEEECCcCC
Confidence 999987653
No 196
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=8.8e-19 Score=128.31 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=80.0
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCC---ceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS---ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~---v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
...++|||+|||+.++++||+++|+.||. |.+|+++.+..|+++|||||+|.+.++|.+|+. +|+..++|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 46788999999999999999999999988 899999988889999999999999999999998 99999999999999
Q ss_pred EeeecHHHHHH
Q 015870 380 LAQRKEDRRAR 390 (399)
Q Consensus 380 ~a~~~~~~~~~ 390 (399)
++.+++.++..
T Consensus 88 ~a~~~~~~~~~ 98 (107)
T 2lmi_A 88 EINNEDVDALM 98 (107)
T ss_dssp ECCHHHHHHHH
T ss_pred ECCHHHHHHHH
Confidence 99987755443
No 197
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=2.4e-18 Score=128.06 Aligned_cols=84 Identities=24% Similarity=0.334 Sum_probs=77.1
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..++++|||+|||+.+++++|+++|++||.|.+++++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|+|.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 346789999999999999999999999999999999865 556899999999999999999999999999999999999
Q ss_pred eecHHH
Q 015870 382 QRKEDR 387 (399)
Q Consensus 382 ~~~~~~ 387 (399)
+++...
T Consensus 83 ~~~~~~ 88 (115)
T 3lqv_A 83 NANRAF 88 (115)
T ss_dssp CHHHHT
T ss_pred cCChhh
Confidence 976543
No 198
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.3e-19 Score=123.27 Aligned_cols=81 Identities=27% Similarity=0.461 Sum_probs=76.0
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
.++++|||+|||+.+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|+..|||..++|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467899999999999999999999999999999998875 6889999999999999999999999999999999999887
Q ss_pred ee
Q 015870 382 QR 383 (399)
Q Consensus 382 ~~ 383 (399)
++
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 199
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=124.41 Aligned_cols=83 Identities=18% Similarity=0.358 Sum_probs=75.5
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
....++|||+|||+.+++++|+++|++||.|.++.++.+ .+|+++|||||+|.+.++|.+|+..||+..++|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345688999999999999999999999999987766655 4788999999999999999999999999999999999999
Q ss_pred eeec
Q 015870 381 AQRK 384 (399)
Q Consensus 381 a~~~ 384 (399)
++..
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 9854
No 200
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=7.2e-18 Score=118.71 Aligned_cols=80 Identities=23% Similarity=0.461 Sum_probs=73.8
Q ss_pred hccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 301 ~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
...+.++|||+|||+.+++++|+++|++||.|.+++++.+. +|+++|||||+|.+.++|.+|+. +++..++|+.|+|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34577899999999999999999999999999999998885 68899999999999999999995 58889999999999
Q ss_pred Ee
Q 015870 380 LA 381 (399)
Q Consensus 380 ~a 381 (399)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 201
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-18 Score=122.08 Aligned_cols=82 Identities=26% Similarity=0.470 Sum_probs=77.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
+.++++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|+..||+..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45789999999999999999999999999999999999988999999999999999999999999999999999999876
Q ss_pred cc
Q 015870 100 SH 101 (399)
Q Consensus 100 ~~ 101 (399)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 202
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-18 Score=123.79 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=73.9
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec--CeeEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV--SKPLYVA 379 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~ 379 (399)
..++++|||+|||+.+++++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.||+..+. |++|+|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 356789999999999999999999999999999998765 789999999999999999999999999 9999999
Q ss_pred EeeecH
Q 015870 380 LAQRKE 385 (399)
Q Consensus 380 ~a~~~~ 385 (399)
||+++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 999875
No 203
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=120.02 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=76.7
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--C
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT--P 89 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~--~ 89 (399)
+..+.+...+++++|||+|||+++++++|+++|++||.|.++.++.+ +|+|||+|.+.++|.+|+..|++. .
T Consensus 4 ~~~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (104)
T 1wex_A 4 GSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVY 77 (104)
T ss_dssp SCCCSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCB
T ss_pred CCCCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 44555667788999999999999999999999999999999998764 469999999999999999988754 4
Q ss_pred CCCcccEEeeccCCcc
Q 015870 90 LNGKPIRVMYSHRDPS 105 (399)
Q Consensus 90 ~~g~~i~v~~~~~~~~ 105 (399)
+.|++|.|.++.....
T Consensus 78 i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 78 IAGQQAFFNYSTSKRI 93 (104)
T ss_dssp SSSSBCEEEECSSSSC
T ss_pred ECCEEEEEEEccCccc
Confidence 8999999999976543
No 204
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.8e-18 Score=122.99 Aligned_cols=89 Identities=15% Similarity=0.293 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--C
Q 015870 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF--T 88 (399)
Q Consensus 11 ~~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~--~ 88 (399)
...+......+++++|||+|||+++++++|+++|++||.|.++.++.+ +|+|||+|.+.++|.+|+..+++ .
T Consensus 19 ~~~~~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~ 92 (119)
T 2ad9_A 19 SHMGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTP 92 (119)
T ss_dssp ---CCTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCC
T ss_pred cccccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCc
Confidence 334444556778999999999999999999999999999999999875 47999999999999999998874 5
Q ss_pred CCCCcccEEeeccCCcc
Q 015870 89 PLNGKPIRVMYSHRDPS 105 (399)
Q Consensus 89 ~~~g~~i~v~~~~~~~~ 105 (399)
.+.|++|.|.++.....
T Consensus 93 ~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 93 VLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp CBTTBCCEEEECSSSSC
T ss_pred eECCeEEEEEEccCCCC
Confidence 79999999999976543
No 205
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=120.15 Aligned_cols=83 Identities=25% Similarity=0.448 Sum_probs=76.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCC-cccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR-SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~-~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
..+++|||+|||+++++++|+++|++||.|.++.++.+..++. ++|+|||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4578999999999999999999999999999999999877655 889999999999999999999999999999999998
Q ss_pred ccCC
Q 015870 100 SHRD 103 (399)
Q Consensus 100 ~~~~ 103 (399)
+...
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8654
No 206
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=5.4e-18 Score=120.02 Aligned_cols=82 Identities=24% Similarity=0.451 Sum_probs=77.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
...++|||+|||+++++++|+++|++||.|.++.+..+..++.++|+|||+|.+.++|.+|+ .+++..+.|+.|+|.++
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999999889999999999999999999999 89999999999999998
Q ss_pred cCC
Q 015870 101 HRD 103 (399)
Q Consensus 101 ~~~ 103 (399)
...
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 653
No 207
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=127.86 Aligned_cols=87 Identities=18% Similarity=0.238 Sum_probs=79.1
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCc----eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSI----TSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v----~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 377 (399)
.....+|+|+|||++++++||+++|++||.| .+|+|+.+.+|+++|||||+|.+.++|.+|+.. |+..++||.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 4567899999999999999999999999875 689999888999999999999999999999976 99999999999
Q ss_pred EEEeeecHHHHH
Q 015870 378 VALAQRKEDRRA 389 (399)
Q Consensus 378 v~~a~~~~~~~~ 389 (399)
|..+.+++.++.
T Consensus 99 V~~a~~~e~~~~ 110 (123)
T 2dha_A 99 LFRSTAAEVQQV 110 (123)
T ss_dssp CEEECHHHHHHH
T ss_pred EEECCHHHHHHH
Confidence 999987766653
No 208
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=124.69 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=75.4
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+.++|||+|||+.+++++|+++|++||.| +++.+.+++++|||||+|.+.++|.+|+..||+..++|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3467899999999999999999999999977 5666678889999999999999999999999999999999999999
Q ss_pred eecHHH
Q 015870 382 QRKEDR 387 (399)
Q Consensus 382 ~~~~~~ 387 (399)
+++...
T Consensus 89 ~~~~~~ 94 (101)
T 2fc9_A 89 GPRGSP 94 (101)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987543
No 209
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=121.65 Aligned_cols=86 Identities=17% Similarity=0.307 Sum_probs=74.9
Q ss_pred CCCCCCCCccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--CCC
Q 015870 15 GANANQFGTTSLYVGDLEA-NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT--PLN 91 (399)
Q Consensus 15 ~~~~~~~~~~~l~v~nLP~-~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~--~~~ 91 (399)
.......++++|||+|||+ ++++++|+++|++||.|.++.+++++ |+|||+|.+.++|.+|+..|++. .+.
T Consensus 7 ~~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 7 GQKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 3344466899999999999 99999999999999999999998653 59999999999999999998864 489
Q ss_pred CcccEEeeccCCccc
Q 015870 92 GKPIRVMYSHRDPSL 106 (399)
Q Consensus 92 g~~i~v~~~~~~~~~ 106 (399)
|++|.|.++......
T Consensus 81 Gr~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 81 GKPVRVHLSQKYKRI 95 (102)
T ss_dssp TEECEEEEECCCTTS
T ss_pred CcEEEEEECCCCCCC
Confidence 999999999865443
No 210
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-18 Score=129.15 Aligned_cols=86 Identities=28% Similarity=0.414 Sum_probs=78.5
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||+.+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|+..+++ .++|++|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 4567899999999999999999999999999999998875 688999999999999999999999998 89999999999
Q ss_pred eeecHHHH
Q 015870 381 AQRKEDRR 388 (399)
Q Consensus 381 a~~~~~~~ 388 (399)
|+++...+
T Consensus 93 a~~~~~~~ 100 (116)
T 2cqd_A 93 AYLGAKPR 100 (116)
T ss_dssp STTTCCCC
T ss_pred cccCCCcc
Confidence 97654433
No 211
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.2e-18 Score=120.85 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=76.8
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~----~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
.....+.++|||+|||+++++++|+ ++|++||.|.++.++.++.+ +|||||+|.+.++|++|+..||+..+.|
T Consensus 3 s~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 3 SGSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp CCCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3445577899999999999999999 99999999999999988654 6899999999999999999999999999
Q ss_pred cccEEeeccCCc
Q 015870 93 KPIRVMYSHRDP 104 (399)
Q Consensus 93 ~~i~v~~~~~~~ 104 (399)
+.|+|.++...+
T Consensus 80 r~l~V~~a~~~~ 91 (96)
T 2dgx_A 80 KKILVSLATGAS 91 (96)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEEcCCCC
Confidence 999999986543
No 212
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-17 Score=119.26 Aligned_cols=83 Identities=22% Similarity=0.405 Sum_probs=74.9
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC--Cc
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN--GK 93 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~--g~ 93 (399)
......++++|||+|||+++++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|+..||+..+. |+
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~ 83 (97)
T 1why_A 10 GYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDR 83 (97)
T ss_dssp CCCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc
Confidence 3455677899999999999999999999999999999988754 469999999999999999999999999 99
Q ss_pred ccEEeeccCCc
Q 015870 94 PIRVMYSHRDP 104 (399)
Q Consensus 94 ~i~v~~~~~~~ 104 (399)
.|+|.++.+.+
T Consensus 84 ~l~V~~a~~~~ 94 (97)
T 1why_A 84 RLRVDFAKSGP 94 (97)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEECCCCC
Confidence 99999987653
No 213
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.6e-18 Score=125.49 Aligned_cols=82 Identities=34% Similarity=0.668 Sum_probs=77.6
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee--------cCe
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV--------VSK 374 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~--------~g~ 374 (399)
.+.++|||+|||+.+++++|+++|++||.|.+++++.+.++.++|||||+|.+.++|.+|+..|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 467899999999999999999999999999999999988899999999999999999999999999999 688
Q ss_pred eEEEEEeeec
Q 015870 375 PLYVALAQRK 384 (399)
Q Consensus 375 ~l~v~~a~~~ 384 (399)
+|.|.||+|+
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999975
No 214
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-18 Score=133.15 Aligned_cols=87 Identities=34% Similarity=0.517 Sum_probs=80.1
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||..+++++|+++|+.||.|.+|+++.+. +++++|||||+|.+.++|.+|++.||+..++|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999998875 688899999999999999999999999999999999999
Q ss_pred eeecHHHH
Q 015870 381 AQRKEDRR 388 (399)
Q Consensus 381 a~~~~~~~ 388 (399)
|+++..++
T Consensus 119 a~~~~~~~ 126 (139)
T 1u6f_A 119 AASGHQRP 126 (139)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99876543
No 215
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=3.1e-18 Score=127.51 Aligned_cols=87 Identities=18% Similarity=0.294 Sum_probs=75.3
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeE--EEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 015870 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (399)
Q Consensus 13 ~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~--~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 90 (399)
.++....+...++|||+|||+++|+++|+++|++| .|. +|.++.++. |+++|||||+|.+.++|++|+.. ++..|
T Consensus 32 ~g~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l 108 (126)
T 2hgm_A 32 RGSNSADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERI 108 (126)
T ss_dssp ---CTTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCB
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEE
Confidence 34445566788999999999999999999999999 567 899999876 99999999999999999999985 77899
Q ss_pred CCcccEEeeccC
Q 015870 91 NGKPIRVMYSHR 102 (399)
Q Consensus 91 ~g~~i~v~~~~~ 102 (399)
.|+.|.|..+..
T Consensus 109 ~gR~I~V~~a~~ 120 (126)
T 2hgm_A 109 GHRYIEVFKSSQ 120 (126)
T ss_dssp TTBCCCCEEECH
T ss_pred CCEEEEEEECCH
Confidence 999999987753
No 216
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=4.2e-18 Score=129.62 Aligned_cols=89 Identities=22% Similarity=0.418 Sum_probs=81.5
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEE--EEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC---
Q 015870 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS--VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT--- 88 (399)
Q Consensus 14 ~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~--i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~--- 88 (399)
+..+.....+++|||+|||+++|+++|+++|++||.|.. |.+++++.+|.++|||||+|.+. +|.+|+..|++.
T Consensus 14 ~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~ 92 (131)
T 2m2b_A 14 GSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPP 92 (131)
T ss_dssp CCCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence 334555678899999999999999999999999999966 99999998999999999999999 999999999999
Q ss_pred -CCCCcccEEeeccCC
Q 015870 89 -PLNGKPIRVMYSHRD 103 (399)
Q Consensus 89 -~~~g~~i~v~~~~~~ 103 (399)
.+.|+.|.|.++...
T Consensus 93 ~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGS 108 (131)
T ss_dssp CCGGGCCCCCEECCCS
T ss_pred ccCCCEEEEEEECCCC
Confidence 999999999998754
No 217
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=121.45 Aligned_cols=80 Identities=19% Similarity=0.401 Sum_probs=74.1
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+.++|||+|||..+++++|+++|++||.|.++++. +|||||+|.+.++|.+|+..||+..++|+.|+|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 4577899999999999999999999999999999987 469999999999999999999999999999999999
Q ss_pred eecHHHH
Q 015870 382 QRKEDRR 388 (399)
Q Consensus 382 ~~~~~~~ 388 (399)
+++..+.
T Consensus 78 ~~~~~~~ 84 (90)
T 2dnq_A 78 KNKSKAS 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 218
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=123.42 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=75.4
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
....++|||+|||+.++++||+++|++|| +.+|+++.+.+++++|||||+|.+.++|.+|+ .+|+..|+||.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 34668999999999999999999999999 45999999889999999999999999999999 57999999999999998
Q ss_pred eecH
Q 015870 382 QRKE 385 (399)
Q Consensus 382 ~~~~ 385 (399)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 219
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.8e-18 Score=122.83 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=72.9
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
....++|||+|||..+++++|+++|++||.|.++++.+ ++|||||+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 34578999999999999999999999999999999874 4899999999999999999999999999999999999
Q ss_pred eec
Q 015870 382 QRK 384 (399)
Q Consensus 382 ~~~ 384 (399)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 975
No 220
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.7e-18 Score=125.24 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=74.9
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecC-----eeEE
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS-----KPLY 377 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g-----~~l~ 377 (399)
...++|||+|||+.++++||+++|++||.|.+++++.+ |||||+|.+.++|.+|++.||+..|.| +.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 35689999999999999999999999999999999876 799999999999999999999999999 9999
Q ss_pred EEEeeecHHHHH
Q 015870 378 VALAQRKEDRRA 389 (399)
Q Consensus 378 v~~a~~~~~~~~ 389 (399)
|.+|+++..++.
T Consensus 87 V~~a~~~~~~~~ 98 (108)
T 1x4c_A 87 VKVDGPRSPSYG 98 (108)
T ss_dssp EEESSCCSCCCC
T ss_pred EEeCCCCCCCCC
Confidence 999998765543
No 221
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3e-18 Score=127.06 Aligned_cols=86 Identities=16% Similarity=0.223 Sum_probs=78.6
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCe-EEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcc
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQV-VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v-~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~ 94 (399)
....+.+.++|||+|||+++|+++|+++|++||.| .+|.++.+. ++.++|||||+|.+.++|++|+.. ++..|.|+.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~ 85 (114)
T 2cpy_A 8 EGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGRE 85 (114)
T ss_dssp CCSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEE
T ss_pred CCCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeE
Confidence 34456778999999999999999999999999999 889999997 899999999999999999999996 999999999
Q ss_pred cEEeeccCC
Q 015870 95 IRVMYSHRD 103 (399)
Q Consensus 95 i~v~~~~~~ 103 (399)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (114)
T 2cpy_A 86 AFVHVVTLE 94 (114)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999988643
No 222
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-18 Score=126.46 Aligned_cols=83 Identities=27% Similarity=0.500 Sum_probs=77.1
Q ss_pred hccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 301 ~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
.....++|||+|||..+++++|+++|++||.|.++++..+ +|||||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 3457789999999999999999999999999999999886 78999999999999999999999999999999999
Q ss_pred eeecHHHH
Q 015870 381 AQRKEDRR 388 (399)
Q Consensus 381 a~~~~~~~ 388 (399)
++++...+
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4g_A 96 GKESPDMT 103 (109)
T ss_dssp CCCCCSSC
T ss_pred cCCCCCCC
Confidence 99876544
No 223
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=4.6e-18 Score=123.36 Aligned_cols=92 Identities=25% Similarity=0.431 Sum_probs=80.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccCC
Q 015870 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (399)
++|||+|||+++++++|+++|++||+|.++.+..+ ++|+|||+|.+.++|.+|+..|++..+.|+.|+|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 5679999999999999999999999999999999998765
Q ss_pred ccc--------ccCCCceEEEcCCC
Q 015870 104 PSL--------RKSGAGNIFIKNLD 120 (399)
Q Consensus 104 ~~~--------~~~~~~~l~v~nlp 120 (399)
+.. ......++||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 422 11225678999886
No 224
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=6.3e-18 Score=133.08 Aligned_cols=87 Identities=22% Similarity=0.283 Sum_probs=80.2
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||+.+++++|+++|++||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.||+..|+|+.|+|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999998886 588999999999999999999999999999999999999
Q ss_pred eeecHHHH
Q 015870 381 AQRKEDRR 388 (399)
Q Consensus 381 a~~~~~~~ 388 (399)
|+++...+
T Consensus 116 a~~~~~~~ 123 (156)
T 1h2v_Z 116 DAGFKEGR 123 (156)
T ss_dssp ESCCCTTC
T ss_pred CCCCCCcC
Confidence 98765543
No 225
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=7.9e-18 Score=118.91 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=71.9
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC--CCCc
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP--LNGK 93 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~--~~g~ 93 (399)
+....+++++|+|+|||.++|+++|+++|++||.|.++.++++ +|+|||+|.+.++|.+|+..|++.. +.|+
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 3455678999999999999999999999999999999999753 4699999999999999999999775 7899
Q ss_pred ccEEeeccCC
Q 015870 94 PIRVMYSHRD 103 (399)
Q Consensus 94 ~i~v~~~~~~ 103 (399)
+|.|.+++..
T Consensus 88 ~i~V~~S~~k 97 (100)
T 3r27_A 88 PAFVNYSTSQ 97 (100)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecccc
Confidence 9999998754
No 226
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=2.4e-18 Score=117.43 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=70.2
Q ss_pred eEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 307 ~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
+|+|+|||+.+++++|+++|++||.|.+++++.+. +|+++|+|||+|.+.++|.+|++ +|+..++|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999998876 78899999999999999999996 9999999999999986
No 227
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-18 Score=125.21 Aligned_cols=83 Identities=22% Similarity=0.279 Sum_probs=76.7
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceE-EEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITS-CKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~-v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
...++|||+|||+.++++||+++|++||.|.+ ++++.+.+|+++|||||+|.+.++|.+|+.. ++..++||.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45789999999999999999999999999987 8888888899999999999999999999987 999999999999998
Q ss_pred eecHH
Q 015870 382 QRKED 386 (399)
Q Consensus 382 ~~~~~ 386 (399)
.++..
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 76543
No 228
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.74 E-value=1e-17 Score=120.08 Aligned_cols=78 Identities=24% Similarity=0.469 Sum_probs=72.1
Q ss_pred hccCCceEEEecCCC-cCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 301 DKFQGANLYIKNLDD-SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 301 ~~~~~~~l~v~nl~~-~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
..+++++|||+|||+ .+++++|+++|++||.|.++++. +|||||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456789999999998 99999999999999999999983 6799999999999999999999999999999999
Q ss_pred EeeecH
Q 015870 380 LAQRKE 385 (399)
Q Consensus 380 ~a~~~~ 385 (399)
+++++.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 998753
No 229
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=4e-18 Score=116.35 Aligned_cols=75 Identities=27% Similarity=0.495 Sum_probs=71.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 25 ~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
+|||+|||+++++++|+++|++||+|.++.++.++.++.++|+|||+|.+.++|++|+. +++..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998889999999999999999999998 8999999999999864
No 230
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-18 Score=125.58 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=75.5
Q ss_pred cCCceEEEecCCCcC------CHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe-e
Q 015870 303 FQGANLYIKNLDDSI------DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-P 375 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~------~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~-~ 375 (399)
..+++|||+|||+.+ ++++|+++|++||.|.+++++ ..+|+++|||||+|.+.++|.+|+..|||..++|+ +
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 346899999999999 789999999999999999988 56789999999999999999999999999999998 9
Q ss_pred EEEEEeeecH
Q 015870 376 LYVALAQRKE 385 (399)
Q Consensus 376 l~v~~a~~~~ 385 (399)
|+|.+|.+.+
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999998653
No 231
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.2e-18 Score=122.51 Aligned_cols=79 Identities=27% Similarity=0.434 Sum_probs=74.1
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+.++|||+|||+.+++++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.||+..++|++|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 356789999999999999999999999999999999865 789999999999999999999999999999999999
Q ss_pred eecH
Q 015870 382 QRKE 385 (399)
Q Consensus 382 ~~~~ 385 (399)
+++.
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 9765
No 232
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.1e-18 Score=118.22 Aligned_cols=76 Identities=26% Similarity=0.417 Sum_probs=71.7
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh-cCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM-NGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~~~~~~g~~l~v~~ 380 (399)
..+.++|+|+|||..+++++|+++|++||.|.++++.++ +|+|||+|.+.++|.+|+..| ++..++|++|+|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 456789999999999999999999999999999999875 789999999999999999989 99999999999999
Q ss_pred ee
Q 015870 381 AQ 382 (399)
Q Consensus 381 a~ 382 (399)
||
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 233
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.5e-18 Score=128.77 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=77.3
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceE-EEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITS-CKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~-v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
...++|||+|||+.++++||+++|++||.|.+ +.+....+|+++|||||+|.+.++|.+|+. +|+..|+|+.|+|.+|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45689999999999999999999999999988 455566689999999999999999999998 9999999999999999
Q ss_pred eecHHHH
Q 015870 382 QRKEDRR 388 (399)
Q Consensus 382 ~~~~~~~ 388 (399)
.++...+
T Consensus 102 ~~~~~~~ 108 (124)
T 1wel_A 102 TKKGMLE 108 (124)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9887654
No 234
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=9.7e-18 Score=130.87 Aligned_cols=81 Identities=27% Similarity=0.427 Sum_probs=76.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g--~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
..++|||+|||+++++++|+++|++|| .|.++.++.++.+|.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 015870 100 SHR 102 (399)
Q Consensus 100 ~~~ 102 (399)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 854
No 235
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.7e-18 Score=121.45 Aligned_cols=82 Identities=23% Similarity=0.412 Sum_probs=72.0
Q ss_pred hccCCceEEEecCCC-cCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 301 DKFQGANLYIKNLDD-SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 301 ~~~~~~~l~v~nl~~-~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
...++++|||+|||+ .+++++|+++|++||.|.++++. +|||||+|.+.++|.+|+..||+..+.|++|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 345789999999998 99999999999999999999984 5799999999999999999999999999999999
Q ss_pred EeeecHHHHH
Q 015870 380 LAQRKEDRRA 389 (399)
Q Consensus 380 ~a~~~~~~~~ 389 (399)
+++++...+.
T Consensus 79 ~a~~~~~~~~ 88 (96)
T 2kvi_A 79 VSSSNARPQF 88 (96)
T ss_dssp EEECCCC---
T ss_pred EcCcCCCCCC
Confidence 9997765543
No 236
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=118.20 Aligned_cols=83 Identities=16% Similarity=0.290 Sum_probs=73.1
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCCCCCcc
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN--FTPLNGKP 94 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~--~~~~~g~~ 94 (399)
....+++++|||+|||+++++++|+++|++||.|.++.++.+ +|+|||+|.+.++|.+|+..++ +..+.|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 344567899999999999999999999999999999988764 4799999999999999999875 56799999
Q ss_pred cEEeeccCCcc
Q 015870 95 IRVMYSHRDPS 105 (399)
Q Consensus 95 i~v~~~~~~~~ 105 (399)
|.|.++.....
T Consensus 83 l~V~~a~~~~~ 93 (101)
T 2cq1_A 83 IYIQYSNHKEL 93 (101)
T ss_dssp CEEEECSCSSC
T ss_pred EEEEEcCcccC
Confidence 99999976544
No 237
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=120.33 Aligned_cols=90 Identities=21% Similarity=0.387 Sum_probs=78.8
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
+..+.+..+.+.++|||+|||+++++++|+++|++||.| .++.+ .++.++|||||+|.+.++|++|+..|++..|.
T Consensus 4 ~~s~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 4 GSSGNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp SCCCCCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred CCCCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 334445567789999999999999999999999999976 55665 67889999999999999999999999999999
Q ss_pred CcccEEeeccCCcc
Q 015870 92 GKPIRVMYSHRDPS 105 (399)
Q Consensus 92 g~~i~v~~~~~~~~ 105 (399)
|+.|+|.++.....
T Consensus 80 g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 80 GRAIRLELQGPRGS 93 (101)
T ss_dssp TEEEEEEECSSCCC
T ss_pred CeEEEEEEcCCCCC
Confidence 99999999976543
No 238
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-17 Score=117.85 Aligned_cols=85 Identities=18% Similarity=0.304 Sum_probs=74.4
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 015870 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (399)
Q Consensus 14 ~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~ 93 (399)
.+.......+++|||+|||+++++++|+++|++||.|. +.++.+ .++|||||+|.+.++|++|+..||+..+.|+
T Consensus 10 ~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 10 SPPGEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp CCCCSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 34445577789999999999999999999999999986 666643 5668999999999999999999999999999
Q ss_pred ccEEeeccCC
Q 015870 94 PIRVMYSHRD 103 (399)
Q Consensus 94 ~i~v~~~~~~ 103 (399)
.|.|.++...
T Consensus 85 ~l~V~~a~~~ 94 (97)
T 2e5j_A 85 TLRVALARQQ 94 (97)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999998754
No 239
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-18 Score=126.76 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=77.6
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCC-ceEEEEe-eCC-CCCcccEEEEEeCCHHHHHHHHHHhc--CceecCeeEE
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS-ITSCKVM-RDP-SGISRGSGFVAFSTPEEASRALLEMN--GKMVVSKPLY 377 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~-v~~v~~~-~~~-~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~l~ 377 (399)
.+.++|||+|||+.+++++|+++|++||. |.++.++ .+. .|+++|||||+|.+.++|.+|+..|+ +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999987 443 56899999999999999999999996 5899999999
Q ss_pred EEEeeecHHHH
Q 015870 378 VALAQRKEDRR 388 (399)
Q Consensus 378 v~~a~~~~~~~ 388 (399)
|.||+++.+..
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99999877644
No 240
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=7.8e-18 Score=127.15 Aligned_cols=81 Identities=21% Similarity=0.390 Sum_probs=75.9
Q ss_pred CceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeee
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 383 (399)
.++|||+|||..+++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|+|+++++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 4799999999999999999999999999999998874 7889999999999999999999 8999999999999999986
Q ss_pred cHH
Q 015870 384 KED 386 (399)
Q Consensus 384 ~~~ 386 (399)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 241
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=5.8e-18 Score=122.35 Aligned_cols=87 Identities=24% Similarity=0.439 Sum_probs=74.2
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 015870 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL-STRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (399)
Q Consensus 15 ~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~-~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~ 93 (399)
..+......++|||+|||.++++++|+++|++|| |.++.++.+. .+|.++|||||+|.+.++|.+|+ .|++..+.|+
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 3345578899999999999999999999999999 9999999987 58999999999999999999999 7999999999
Q ss_pred ccEEeeccCC
Q 015870 94 PIRVMYSHRD 103 (399)
Q Consensus 94 ~i~v~~~~~~ 103 (399)
.|+|.++...
T Consensus 89 ~l~V~~a~~~ 98 (100)
T 2j76_E 89 RIRVDVADQA 98 (100)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEeccCC
Confidence 9999998654
No 242
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-18 Score=132.74 Aligned_cols=84 Identities=20% Similarity=0.394 Sum_probs=78.2
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceE--EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCc----eecCe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITS--CKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGK----MVVSK 374 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~--v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~----~~~g~ 374 (399)
..++++|||+|||+.+++++|+++|++||.|.. |+++.+. +|+++|||||+|.+. +|.+|+..|||. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999976 9999887 899999999999999 999999999999 99999
Q ss_pred eEEEEEeeecHH
Q 015870 375 PLYVALAQRKED 386 (399)
Q Consensus 375 ~l~v~~a~~~~~ 386 (399)
.|+|.+|++++.
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999998654
No 243
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=123.38 Aligned_cols=85 Identities=16% Similarity=0.341 Sum_probs=75.8
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~----~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
+....++++|||+|||+++++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|+..||+..+.|
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 4456678999999999999999866 6999999999988753 57889999999999999999999999999999
Q ss_pred cccEEeeccCCc
Q 015870 93 KPIRVMYSHRDP 104 (399)
Q Consensus 93 ~~i~v~~~~~~~ 104 (399)
++|+|.++....
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999997654
No 244
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.8e-18 Score=116.66 Aligned_cols=75 Identities=32% Similarity=0.554 Sum_probs=71.2
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
++|+|+|||+.+++++|+++|++||.|.+++++.+. +|+++|+|||+|.+.++|.+|+..++ ..++|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999998875 68899999999999999999999999 9999999999987
No 245
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=2e-18 Score=131.13 Aligned_cols=85 Identities=16% Similarity=0.255 Sum_probs=74.0
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
+..+...++|||+|||+++|+++|+++|++|| |++|.++.++. ++++|||||+|.+.++|++|+ .+++..+.|+.|.
T Consensus 40 ~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~ 116 (139)
T 2hgn_A 40 TVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIE 116 (139)
T ss_dssp -----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEE
Confidence 44567889999999999999999999999999 67999999865 999999999999999999999 6899999999999
Q ss_pred EeeccCCc
Q 015870 97 VMYSHRDP 104 (399)
Q Consensus 97 v~~~~~~~ 104 (399)
|..+...+
T Consensus 117 V~~a~~~~ 124 (139)
T 2hgn_A 117 LFLNSTTG 124 (139)
T ss_dssp CEECCCSC
T ss_pred EEECCCCC
Confidence 98886543
No 246
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.3e-18 Score=116.92 Aligned_cols=76 Identities=29% Similarity=0.486 Sum_probs=72.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
++|+|+|||+++++++|+++|++||+|.++.++.++.++.++|+|||+|.+.++|.+|+..++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998889999999999999999999999988 8999999999875
No 247
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.6e-18 Score=125.85 Aligned_cols=83 Identities=33% Similarity=0.504 Sum_probs=77.2
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
+.++|||+|||+.+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|+.. ++..|+|+.|+|.+++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 34789999999999999999999999999999999885 688999999999999999999987 9999999999999999
Q ss_pred ecHHH
Q 015870 383 RKEDR 387 (399)
Q Consensus 383 ~~~~~ 387 (399)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 88654
No 248
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.9e-18 Score=122.90 Aligned_cols=84 Identities=25% Similarity=0.396 Sum_probs=77.1
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||+.+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|+. ++..++|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3567899999999999999999999999999999998885 68999999999999999999998 57899999999999
Q ss_pred eeecHHH
Q 015870 381 AQRKEDR 387 (399)
Q Consensus 381 a~~~~~~ 387 (399)
++++.+.
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9987654
No 249
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=117.50 Aligned_cols=79 Identities=19% Similarity=0.407 Sum_probs=73.3
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+.++|||+|||+.+++++|+++|++||.|.++++.++ ||||+|.+.++|.+|+..||+..++|+.|+|+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456789999999999999999999999999999998754 9999999999999999999999999999999999
Q ss_pred eecHHH
Q 015870 382 QRKEDR 387 (399)
Q Consensus 382 ~~~~~~ 387 (399)
+++...
T Consensus 80 ~~~~~~ 85 (92)
T 2dgt_A 80 TSRLRT 85 (92)
T ss_dssp SCCCSC
T ss_pred cCCCCC
Confidence 987643
No 250
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.9e-18 Score=122.52 Aligned_cols=82 Identities=28% Similarity=0.472 Sum_probs=72.1
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeec
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 384 (399)
++|||+|||..+++++|+++|++||.|.++++..+. +|+++|||||+|.+.+ |.+|+..|||..++|++|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 689999999999999999999999999999998876 5889999999999999 99999999999999999999999976
Q ss_pred HHHH
Q 015870 385 EDRR 388 (399)
Q Consensus 385 ~~~~ 388 (399)
....
T Consensus 81 ~~~~ 84 (90)
T 2ki2_A 81 KSLE 84 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6443
No 251
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6e-18 Score=125.68 Aligned_cols=85 Identities=31% Similarity=0.452 Sum_probs=78.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
......++|||+|||.++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|+ .|++..|.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 33456789999999999999999999999999999999999888999999999999999999999 89999999999999
Q ss_pred eeccCC
Q 015870 98 MYSHRD 103 (399)
Q Consensus 98 ~~~~~~ 103 (399)
.++...
T Consensus 99 ~~a~~~ 104 (114)
T 2cq4_A 99 QASQAE 104 (114)
T ss_dssp EEHHHH
T ss_pred EecCCC
Confidence 998643
No 252
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-18 Score=119.33 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=68.3
Q ss_pred CceEEEecCCCcC------CHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe-eEE
Q 015870 305 GANLYIKNLDDSI------DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-PLY 377 (399)
Q Consensus 305 ~~~l~v~nl~~~~------~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~-~l~ 377 (399)
+++|||+|||+.+ ++++|+++|++||.|.+++++ ..+|+++|||||+|.+.++|.+|+..|||..++|+ +|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3689999999999 679999999999999999987 46788999999999999999999999999999999 887
Q ss_pred EE
Q 015870 378 VA 379 (399)
Q Consensus 378 v~ 379 (399)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 253
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=7.6e-18 Score=125.43 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=77.0
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCC---eEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~---v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~ 93 (399)
.......++|||+|||+++|+++|+++|+.||. |.+|.++.++. |+++|||||+|.+.++|++|+. +++..|.|+
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 88 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHR 88 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe
Confidence 344567899999999999999999999999998 89999999876 9999999999999999999999 899999999
Q ss_pred ccEEeeccC
Q 015870 94 PIRVMYSHR 102 (399)
Q Consensus 94 ~i~v~~~~~ 102 (399)
.|+|.++..
T Consensus 89 ~i~V~~a~~ 97 (118)
T 2db1_A 89 YIEVFKSHR 97 (118)
T ss_dssp EEEEEEECH
T ss_pred EEEEEECCH
Confidence 999988753
No 254
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=123.06 Aligned_cols=93 Identities=17% Similarity=0.357 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHH---HHHhccCCeEEEEEeeeCCCC---CcccEEEEEeCCHHHHHHHHHHh
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLY---DLFNQMGQVVSVRVCRDLSTR---RSLGYGYVNFSNAQEAARALEML 85 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~---~~f~~~g~v~~i~~~~~~~~~---~~~g~a~V~f~~~~~A~~a~~~l 85 (399)
+...........++|||+|||+++++++|+ ++|++||+|.++.++.+..++ .++|||||+|.+.++|++|+..|
T Consensus 4 ~s~~~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~l 83 (111)
T 2cpi_A 4 GSSGASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCV 83 (111)
T ss_dssp CSSCSCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHh
Confidence 334445567788999999999999999999 999999999999999887644 45699999999999999999999
Q ss_pred CCCCCCCcccEEeeccCCc
Q 015870 86 NFTPLNGKPIRVMYSHRDP 104 (399)
Q Consensus 86 ~~~~~~g~~i~v~~~~~~~ 104 (399)
|+..|.|++|+|.++...+
T Consensus 84 ng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 84 NNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEETTEEEEEESCCCCS
T ss_pred CCCEECCEEEEEEeccccc
Confidence 9999999999999987654
No 255
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=6.1e-17 Score=114.62 Aligned_cols=79 Identities=27% Similarity=0.496 Sum_probs=72.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
...+.++|||+|||+++++++|+++|++||.|.++.+. +|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678999999999999999999999999999999987 3599999999999999999999999999999999
Q ss_pred eccCCcc
Q 015870 99 YSHRDPS 105 (399)
Q Consensus 99 ~~~~~~~ 105 (399)
++.....
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9976544
No 256
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.3e-17 Score=122.40 Aligned_cols=86 Identities=26% Similarity=0.385 Sum_probs=74.8
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
...+.+.++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+..+ +..+.|+.|.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 445778899999999999999999999999999999999999888999999999999999999999975 5889999999
Q ss_pred EeeccCC
Q 015870 97 VMYSHRD 103 (399)
Q Consensus 97 v~~~~~~ 103 (399)
|.++...
T Consensus 98 V~~a~~~ 104 (109)
T 2rs2_A 98 PKVAFPR 104 (109)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9998754
No 257
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.9e-17 Score=120.33 Aligned_cols=85 Identities=21% Similarity=0.427 Sum_probs=77.6
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC------
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL------ 90 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~------ 90 (399)
.....+.++|||+|||+++++++|+++|++||.|.++.++.+. ++.++|||||+|.+.++|.+|+..||+..+
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 4456778999999999999999999999999999999999997 899999999999999999999999999998
Q ss_pred --CCcccEEeeccC
Q 015870 91 --NGKPIRVMYSHR 102 (399)
Q Consensus 91 --~g~~i~v~~~~~ 102 (399)
.++++.|.++.+
T Consensus 98 ~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 98 SAPTEPLLCKFSGP 111 (114)
T ss_dssp CCCSSCBEEEECCC
T ss_pred cCCCCceeEEccCC
Confidence 567788888764
No 258
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=2.3e-17 Score=130.93 Aligned_cols=93 Identities=19% Similarity=0.279 Sum_probs=82.2
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 13 ~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
.++.+....++++|||+|||+++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|++..|.|
T Consensus 62 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 62 LEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp ----CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34456667788999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cccEEeeccCCcc
Q 015870 93 KPIRVMYSHRDPS 105 (399)
Q Consensus 93 ~~i~v~~~~~~~~ 105 (399)
+.|.|.++...+.
T Consensus 142 ~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 142 QTIQVDWCFVKGP 154 (165)
T ss_dssp EECEEEESEECC-
T ss_pred EEEEEEEecCCCC
Confidence 9999999876543
No 259
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.5e-18 Score=123.70 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=71.6
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
.+.++|||+|||+.+++++|+++|++||.|.++.+++ ++|||||+|.+.++|.+|+..|||..++|++|+|.||+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3567999999999999999999999999999999875 37899999999999999999999999999999999998
Q ss_pred ec
Q 015870 383 RK 384 (399)
Q Consensus 383 ~~ 384 (399)
.+
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 260
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-17 Score=115.08 Aligned_cols=83 Identities=27% Similarity=0.471 Sum_probs=75.3
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCCCC
Q 015870 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML-NFTPLN 91 (399)
Q Consensus 13 ~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l-~~~~~~ 91 (399)
....++.+.+.++|||+|||+++++++|+++|++||.|.++.+..+ +|+|||+|.+.++|.+|+..| ++..+.
T Consensus 2 s~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~ 75 (85)
T 2ytc_A 2 SSGSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVN 75 (85)
T ss_dssp CCCCCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence 3456677788999999999999999999999999999999999864 469999999999999999988 899999
Q ss_pred CcccEEeecc
Q 015870 92 GKPIRVMYSH 101 (399)
Q Consensus 92 g~~i~v~~~~ 101 (399)
|++|+|.+++
T Consensus 76 g~~l~v~~ak 85 (85)
T 2ytc_A 76 GRRLNVKWGR 85 (85)
T ss_dssp TEECCEEECC
T ss_pred CCEEEEEecC
Confidence 9999998863
No 261
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=121.31 Aligned_cols=86 Identities=19% Similarity=0.322 Sum_probs=78.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEe-eeCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCCCCCccc
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQ-VVSVRVC-RDLSTRRSLGYGYVNFSNAQEAARALEMLN--FTPLNGKPI 95 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~-v~~i~~~-~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~--~~~~~g~~i 95 (399)
..+.++|||+|||+++++++|+++|.+||. |.++.++ .+..++.++|||||+|.+.++|.+|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456899999999999999999999999998 9999998 787888999999999999999999999996 588999999
Q ss_pred EEeeccCCcc
Q 015870 96 RVMYSHRDPS 105 (399)
Q Consensus 96 ~v~~~~~~~~ 105 (399)
+|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 262
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=115.99 Aligned_cols=83 Identities=25% Similarity=0.459 Sum_probs=75.9
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcc
Q 015870 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (399)
Q Consensus 15 ~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~ 94 (399)
..+....+.++|||+|||+++++++|+++|++||.|.++.+.++ +|||+|.+.++|.+|+..||+..+.|+.
T Consensus 2 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 2 SSGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CCSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 45667888999999999999999999999999999999999743 9999999999999999999999999999
Q ss_pred cEEeeccCCcc
Q 015870 95 IRVMYSHRDPS 105 (399)
Q Consensus 95 i~v~~~~~~~~ 105 (399)
|+|.++.....
T Consensus 74 l~V~~a~~~~~ 84 (92)
T 2dgt_A 74 MHVQLSTSRLR 84 (92)
T ss_dssp EEEEESSCCCS
T ss_pred EEEEEccCCCC
Confidence 99999976543
No 263
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.5e-18 Score=121.47 Aligned_cols=80 Identities=24% Similarity=0.359 Sum_probs=72.4
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
..+++|||+|||+.+++++|+++|++||.|. ++++. ++++|||||+|.+.++|.+|+..|||..++|+.|+|.+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4578999999999999999999999999996 56654 3568999999999999999999999999999999999999
Q ss_pred ecHH
Q 015870 383 RKED 386 (399)
Q Consensus 383 ~~~~ 386 (399)
+++.
T Consensus 93 ~~~~ 96 (97)
T 2e5j_A 93 QQRD 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 264
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=9.7e-18 Score=118.77 Aligned_cols=79 Identities=24% Similarity=0.479 Sum_probs=73.1
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+.++|||+|||+.+++++|+++|++||.|.++++.++ ||||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 456789999999999999999999999999999998754 9999999999999999999999999999999999
Q ss_pred eecHHH
Q 015870 382 QRKEDR 387 (399)
Q Consensus 382 ~~~~~~ 387 (399)
+++..+
T Consensus 79 ~~~~~~ 84 (90)
T 2dnp_A 79 TKGQKK 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987543
No 265
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=120.74 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=75.3
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
..+.....++|+|+|||+++|+++|+++|++| .|.+|.++.+.. |+++|+|||+|.+.++|++|+. +++..+.|+.|
T Consensus 9 ~~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 85 (109)
T 2dnn_A 9 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYV 85 (109)
T ss_dssp CCCCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 34445667899999999999999999999999 899999999864 9999999999999999999995 89999999999
Q ss_pred EEeeccC
Q 015870 96 RVMYSHR 102 (399)
Q Consensus 96 ~v~~~~~ 102 (399)
.|..+..
T Consensus 86 ~V~~a~~ 92 (109)
T 2dnn_A 86 EVSPATE 92 (109)
T ss_dssp EEEECCH
T ss_pred EEEECCc
Confidence 9987753
No 266
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=121.58 Aligned_cols=88 Identities=28% Similarity=0.437 Sum_probs=78.6
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 015870 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (399)
Q Consensus 14 ~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~ 93 (399)
........+.++|||+|||.++++++|+++|++||.|.++.+..+. +.++|||||+|.+.++|++|+..|++..+.|+
T Consensus 20 S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 20 HMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp --CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3345567788999999999999999999999999999999999884 45889999999999999999999999999999
Q ss_pred ccEEeeccCC
Q 015870 94 PIRVMYSHRD 103 (399)
Q Consensus 94 ~i~v~~~~~~ 103 (399)
.|+|.++...
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998653
No 267
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-18 Score=122.30 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=73.5
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+.++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..++|+.|+|.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3467899999999999999999999999988766 346788999999999999999999999999999999999999
Q ss_pred eecHH
Q 015870 382 QRKED 386 (399)
Q Consensus 382 ~~~~~ 386 (399)
+++..
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 87754
No 268
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6e-17 Score=116.91 Aligned_cols=87 Identities=26% Similarity=0.510 Sum_probs=77.7
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 13 ~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
.........+.++|||+|||+++++++|+++|++||.|.++.+.++ +|||||+|.+.++|.+|+..|++..+.|
T Consensus 5 s~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 5 SSGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp SSCCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3444566788899999999999999999999999999999999754 4699999999999999999999999999
Q ss_pred cccEEeeccCCcc
Q 015870 93 KPIRVMYSHRDPS 105 (399)
Q Consensus 93 ~~i~v~~~~~~~~ 105 (399)
+.|+|.++.....
T Consensus 79 ~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 79 KQLRVRFACHSAS 91 (99)
T ss_dssp BCCEEEESSCCSC
T ss_pred ceEEEEEcCCCCC
Confidence 9999999976543
No 269
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=5.5e-17 Score=127.67 Aligned_cols=88 Identities=24% Similarity=0.412 Sum_probs=82.0
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
.....++++|||+|||+++|+++|+++|++||.|.+|.++.+..++.++|||||+|.+.++|++|+..|++..|.|+.|+
T Consensus 33 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 33 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 33456789999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EeeccCCc
Q 015870 97 VMYSHRDP 104 (399)
Q Consensus 97 v~~~~~~~ 104 (399)
|.++....
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 99997643
No 270
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=6e-18 Score=122.75 Aligned_cols=77 Identities=25% Similarity=0.494 Sum_probs=72.7
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecH
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 385 (399)
++|||+|||+.+++++|+++|++||.|.+++++.+ ++|||||+|.+.++|.+|+..||+..++|+.|+|++++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999876 68999999999999999999999999999999999999766
Q ss_pred H
Q 015870 386 D 386 (399)
Q Consensus 386 ~ 386 (399)
.
T Consensus 77 ~ 77 (101)
T 2hvz_A 77 R 77 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 271
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.6e-17 Score=118.30 Aligned_cols=90 Identities=23% Similarity=0.431 Sum_probs=79.9
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 13 ~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
.........+.++|||+|||+++++++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|.+|+..|++..|.|
T Consensus 5 s~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2fc8_A 5 SSGPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 81 (102)
T ss_dssp CCTTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 344455678899999999999999999999999774 67888888889999999999999999999999999999999
Q ss_pred cccEEeeccCCcc
Q 015870 93 KPIRVMYSHRDPS 105 (399)
Q Consensus 93 ~~i~v~~~~~~~~ 105 (399)
+.|+|.++.....
T Consensus 82 ~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 82 NKVTLDWAKPKGE 94 (102)
T ss_dssp EECEEEECCCCCS
T ss_pred eEEEEEEecCCCC
Confidence 9999999976543
No 272
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=9.1e-17 Score=109.83 Aligned_cols=78 Identities=28% Similarity=0.337 Sum_probs=67.5
Q ss_pred CCCCccEEEEcCCCCCCCHHH----HHHHHhcc-CCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 015870 19 NQFGTTSLYVGDLEANVTDSQ----LYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~----l~~~f~~~-g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~ 93 (399)
.++..++|||+|||+++++++ |+++|++| |.|.+| ++ |+|||.|.+.++|++|++.|++..+.|+
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 344444599999999999988 55899999 599988 23 7999999999999999999999999999
Q ss_pred ccEEeeccCCccc
Q 015870 94 PIRVMYSHRDPSL 106 (399)
Q Consensus 94 ~i~v~~~~~~~~~ 106 (399)
+|+|.+++.....
T Consensus 75 ~i~v~~A~~~sd~ 87 (96)
T 2diu_A 75 RIIVSFTPKNREL 87 (96)
T ss_dssp CCEEESSCCSCCC
T ss_pred eEEEEecCCCcce
Confidence 9999999876544
No 273
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=9e-18 Score=122.18 Aligned_cols=80 Identities=26% Similarity=0.520 Sum_probs=73.8
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
.+.++|||+|||+.+++++|+++|++||.|.++++++ +||||+|.+.++|.+|++.||+..++|+.|+|.|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 4678999999999999999999999999999999874 499999999999999999999999999999999999
Q ss_pred ecHHHHH
Q 015870 383 RKEDRRA 389 (399)
Q Consensus 383 ~~~~~~~ 389 (399)
++..++.
T Consensus 82 ~~~~~~~ 88 (103)
T 2dgu_A 82 PPDQKRK 88 (103)
T ss_dssp CCCCCCC
T ss_pred CCcccch
Confidence 8776553
No 274
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.3e-17 Score=121.48 Aligned_cols=84 Identities=20% Similarity=0.181 Sum_probs=72.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g-~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
..++..++|||+|||+++++++|+++|++|| .|..+.+..+ .++|||||+|.+.++|++|+..||+..+.|+.|+
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3467789999999999999999999999999 8999988532 4678999999999999999999999999999999
Q ss_pred EeeccCCcc
Q 015870 97 VMYSHRDPS 105 (399)
Q Consensus 97 v~~~~~~~~ 105 (399)
|.++...+.
T Consensus 99 V~~a~~~p~ 107 (111)
T 2jvr_A 99 VERDDNPPP 107 (111)
T ss_dssp EEESCC---
T ss_pred EEECCCCCC
Confidence 999876544
No 275
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=6.2e-18 Score=125.85 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=74.7
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCce--EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSIT--SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~--~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
...++|||+|||+.++++||+++|++| .|. +|+|+.+.+|+++|||||+|.+.++|.+|+. +++..|+||.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 456889999999999999999999999 677 8999988889999999999999999999997 578999999999999
Q ss_pred eeecHH
Q 015870 381 AQRKED 386 (399)
Q Consensus 381 a~~~~~ 386 (399)
+.+++.
T Consensus 118 a~~~e~ 123 (126)
T 2hgm_A 118 SSQEEV 123 (126)
T ss_dssp ECHHHH
T ss_pred CCHHHh
Confidence 976553
No 276
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.72 E-value=7.9e-18 Score=130.44 Aligned_cols=85 Identities=26% Similarity=0.533 Sum_probs=74.6
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceE--------EEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecC
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITS--------CKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~--------v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 373 (399)
..++++|||+|||+.+++++|+++|++||.|.. +++. .+|+++|||||+|.+.++|.+|+..|||..+.|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM--KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE--EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec--cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 457889999999999999999999999999876 3333 358889999999999999999999999999999
Q ss_pred eeEEEEEeeecHHHH
Q 015870 374 KPLYVALAQRKEDRR 388 (399)
Q Consensus 374 ~~l~v~~a~~~~~~~ 388 (399)
+.|+|.||+++..+.
T Consensus 120 ~~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 120 KPMVVQFARSARPKQ 134 (143)
T ss_dssp EECEEEECCCSCC--
T ss_pred cEEEEEECCCCCCcc
Confidence 999999998765544
No 277
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=1.4e-17 Score=138.85 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=78.6
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcC--CceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G--~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..++|||+|||+.+++++|+++|++|| .|.+|+|+.+. +++++|||||+|.+.++|.+||..||+..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999885 899999999999999999999999999999999999999
Q ss_pred eeecHHHH
Q 015870 381 AQRKEDRR 388 (399)
Q Consensus 381 a~~~~~~~ 388 (399)
|++....+
T Consensus 147 a~~~~~~~ 154 (229)
T 3q2s_C 147 VNKQFLSQ 154 (229)
T ss_dssp CCHHHHHH
T ss_pred CCCCccch
Confidence 99776554
No 278
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=3e-17 Score=123.90 Aligned_cols=83 Identities=22% Similarity=0.433 Sum_probs=78.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
.+.++|||+|||.++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999 79999999999999998
Q ss_pred cCCc
Q 015870 101 HRDP 104 (399)
Q Consensus 101 ~~~~ 104 (399)
....
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 279
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.2e-17 Score=114.99 Aligned_cols=82 Identities=28% Similarity=0.486 Sum_probs=74.5
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
+...+.+.++|||+|||+++++++|+++|++||.|.++.++++ ||||+|.+.++|++|+..|++..+.|+.|
T Consensus 2 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 2 SSGSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp CCCSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3455678899999999999999999999999999999999743 99999999999999999999999999999
Q ss_pred EEeeccCCcc
Q 015870 96 RVMYSHRDPS 105 (399)
Q Consensus 96 ~v~~~~~~~~ 105 (399)
+|.++.....
T Consensus 74 ~v~~a~~~~~ 83 (90)
T 2dnp_A 74 NVELSTKGQK 83 (90)
T ss_dssp EEEESCCCCC
T ss_pred EEEECCCCCC
Confidence 9999976543
No 280
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=6e-18 Score=119.95 Aligned_cols=80 Identities=30% Similarity=0.565 Sum_probs=74.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeeccCC
Q 015870 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (399)
++|||+|||.++++++|+++|++||.|.++.+..++.++.++|+|||+|.+.+ |.+|+..|++..+.|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999888999999999999999 99999999999999999999998764
Q ss_pred c
Q 015870 104 P 104 (399)
Q Consensus 104 ~ 104 (399)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 281
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=114.05 Aligned_cols=75 Identities=24% Similarity=0.374 Sum_probs=66.5
Q ss_pred cCCce-EEEecCCCcCCHHH----HHHhhcCcC-CceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 015870 303 FQGAN-LYIKNLDDSIDDEK----LKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376 (399)
Q Consensus 303 ~~~~~-l~v~nl~~~~~~~d----l~~~f~~~G-~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l 376 (399)
+++.+ |||+|||+.+++++ |+.+|++|| .|.+|. + |+|||.|.+.++|.+|++.|+|..+.||+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------G---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------T---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------c---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 34555 89999999999987 558999994 999882 2 899999999999999999999999999999
Q ss_pred EEEEeeecHH
Q 015870 377 YVALAQRKED 386 (399)
Q Consensus 377 ~v~~a~~~~~ 386 (399)
+|+||+.+.+
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999997753
No 282
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.7e-18 Score=125.39 Aligned_cols=85 Identities=29% Similarity=0.466 Sum_probs=75.9
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCc----eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSI----TSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v----~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 377 (399)
..++++|||+|||+.+++++|+++|++||.| ..+++. +++++|||||+|.+.++|.+|+..||+..++|+.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3467899999999999999999999999998 455544 678899999999999999999999999999999999
Q ss_pred EEEeeecHHHHH
Q 015870 378 VALAQRKEDRRA 389 (399)
Q Consensus 378 v~~a~~~~~~~~ 389 (399)
|.||+++..+..
T Consensus 99 v~~a~~~~~~~~ 110 (115)
T 2cpx_A 99 IEFGKNKKQRSS 110 (115)
T ss_dssp EEECCCCSCCCC
T ss_pred EEEccCCCCCCC
Confidence 999998876543
No 283
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=125.25 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=76.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
....+.++|||+|||+++|+++|+++|+.||.|.++.++.+..+|.++|||||+|.+.++|.+|+. +|+..|.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345677999999999999999999999999999886666777799999999999999999999999 9999999999999
Q ss_pred eeccC
Q 015870 98 MYSHR 102 (399)
Q Consensus 98 ~~~~~ 102 (399)
.++..
T Consensus 99 ~~a~~ 103 (124)
T 1wel_A 99 HPITK 103 (124)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98754
No 284
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=126.93 Aligned_cols=80 Identities=33% Similarity=0.502 Sum_probs=74.7
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 380 (399)
..+.++|||+|||..+++++|+++|++||.|.+++++.+. +++++|||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999998874 788999999999999999999999999999999999998
Q ss_pred e
Q 015870 381 A 381 (399)
Q Consensus 381 a 381 (399)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 285
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-17 Score=123.01 Aligned_cols=86 Identities=23% Similarity=0.435 Sum_probs=79.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
.+.+.++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 355679999999999999999999999999999999999988899999999999999999999997 9999999999999
Q ss_pred eccCCcc
Q 015870 99 YSHRDPS 105 (399)
Q Consensus 99 ~~~~~~~ 105 (399)
++.....
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 9876544
No 286
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-18 Score=126.74 Aligned_cols=83 Identities=23% Similarity=0.338 Sum_probs=74.1
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
.+.++|||+|||+.+++++|+++|++||.|.. .++.+ .+++++|||||+|.+.++|.+|++ ||+..+.|+.|+|.+|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999887 43333 468889999999999999999998 9999999999999999
Q ss_pred eecHHH
Q 015870 382 QRKEDR 387 (399)
Q Consensus 382 ~~~~~~ 387 (399)
+++..+
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 987654
No 287
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=114.89 Aligned_cols=73 Identities=14% Similarity=0.277 Sum_probs=67.8
Q ss_pred ccEEEEcCCCCCC------CHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc-cc
Q 015870 23 TTSLYVGDLEANV------TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK-PI 95 (399)
Q Consensus 23 ~~~l~v~nLP~~~------~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~-~i 95 (399)
+++|||+|||..+ ++++|+++|++||+|.++.+.+ .+|.++|||||+|.+.++|.+|+..||+..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 7799999999999999999873 5789999999999999999999999999999999 88
Q ss_pred EE
Q 015870 96 RV 97 (399)
Q Consensus 96 ~v 97 (399)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 288
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=121.82 Aligned_cols=84 Identities=11% Similarity=0.110 Sum_probs=77.5
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCC---eEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~---v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~ 93 (399)
.......++|||+|||+++|+++|+++|+.||. |.+|.++.+.. |.++|+|||+|.+.++|++|+. +++..++|+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 455678899999999999999999999999998 89999999876 9999999999999999999999 899999999
Q ss_pred ccEEeeccC
Q 015870 94 PIRVMYSHR 102 (399)
Q Consensus 94 ~i~v~~~~~ 102 (399)
.|.|.++..
T Consensus 83 ~i~V~~a~~ 91 (107)
T 2lmi_A 83 YVEVYEINN 91 (107)
T ss_dssp CCCCEECCH
T ss_pred EEEEEECCH
Confidence 999988753
No 289
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=1.4e-17 Score=119.86 Aligned_cols=85 Identities=24% Similarity=0.505 Sum_probs=75.0
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~----~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
+++.+++++|||+|||+++++++|+ ++|++||.|.++.+.. ++.++|+|||+|.+.++|.+|+..|++..+.|
T Consensus 2 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (97)
T 1nu4_A 2 VPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 78 (97)
T ss_dssp ----CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 4567789999999999999999999 9999999999998873 46777899999999999999999999999999
Q ss_pred cccEEeeccCCc
Q 015870 93 KPIRVMYSHRDP 104 (399)
Q Consensus 93 ~~i~v~~~~~~~ 104 (399)
+.|+|.++...+
T Consensus 79 ~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 KPMRIQYAKTDS 90 (97)
T ss_dssp EECEEEECSSCC
T ss_pred cEEEEEEccCCC
Confidence 999999997654
No 290
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=9e-18 Score=123.77 Aligned_cols=79 Identities=25% Similarity=0.559 Sum_probs=72.5
Q ss_pred cCCceEEEecCCCc-CCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 303 FQGANLYIKNLDDS-IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 303 ~~~~~l~v~nl~~~-~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
...++|||+|||+. +++++|+++|++||.|.++++ ++|||||+|.+.++|.+|+..||+..++|+.|+|.++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 35689999999999 999999999999999999998 3689999999999999999999999999999999999
Q ss_pred eecHHHH
Q 015870 382 QRKEDRR 388 (399)
Q Consensus 382 ~~~~~~~ 388 (399)
++.+..+
T Consensus 98 ~~~~~~~ 104 (110)
T 1wf1_A 98 GEPKPDR 104 (110)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 9655443
No 291
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=118.91 Aligned_cols=84 Identities=25% Similarity=0.405 Sum_probs=75.1
Q ss_pred hccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 301 ~~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
...+.++|||+|||+.+++++|+++|+.|+ .++++.+. ++.++|||||+|.+.++|.+|++.||+..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345778999999999999999999999874 56666664 78899999999999999999999999999999999999
Q ss_pred EeeecHHH
Q 015870 380 LAQRKEDR 387 (399)
Q Consensus 380 ~a~~~~~~ 387 (399)
||+++.++
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99987654
No 292
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.2e-18 Score=122.23 Aligned_cols=79 Identities=20% Similarity=0.411 Sum_probs=71.9
Q ss_pred ccCCceEEE--ecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee-----cCe
Q 015870 302 KFQGANLYI--KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV-----VSK 374 (399)
Q Consensus 302 ~~~~~~l~v--~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~-----~g~ 374 (399)
..++++||| +||++.+++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++.|||..+ .|+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 457789999 669999999999999999999999988653 78999999999999999999999998 799
Q ss_pred eEEEEEeeecH
Q 015870 375 PLYVALAQRKE 385 (399)
Q Consensus 375 ~l~v~~a~~~~ 385 (399)
+|.|.|+++..
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999998654
No 293
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=123.56 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=72.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCe----EEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQV----VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v----~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
..+.++|+|+|||+++|+++|+++|++||.| .+|.++.+ .+|+++|+|||+|.+.++|++|+.. ++..+.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 4678999999999999999999999999975 68999988 5899999999999999999999996 9899999999
Q ss_pred EEeecc
Q 015870 96 RVMYSH 101 (399)
Q Consensus 96 ~v~~~~ 101 (399)
.|..+.
T Consensus 98 ~V~~a~ 103 (123)
T 2dha_A 98 ELFRST 103 (123)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 887664
No 294
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=9.3e-18 Score=121.73 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=76.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
....+.++|||+|||+++++++|+++|++||.|.. .++.+..++.++|||||+|.+.++|++|+. |++..+.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V 89 (101)
T 1fj7_A 12 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 89 (101)
T ss_dssp TTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEE
Confidence 34557899999999999999999999999998887 666676788899999999999999999999 9999999999999
Q ss_pred eeccCCc
Q 015870 98 MYSHRDP 104 (399)
Q Consensus 98 ~~~~~~~ 104 (399)
.++....
T Consensus 90 ~~a~~~~ 96 (101)
T 1fj7_A 90 EKPKGRD 96 (101)
T ss_dssp ECCSCCC
T ss_pred EEcCCCC
Confidence 9987543
No 295
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=119.23 Aligned_cols=84 Identities=12% Similarity=0.152 Sum_probs=76.1
Q ss_pred CCCCCccEEEEcCCCCCC------CHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 18 ANQFGTTSLYVGDLEANV------TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~------~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
.....+++|||+|||+.+ ++++|+++|++||.|.++.++ ..+|.++|||||+|.+.++|.+|+..||+..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 345567899999999999 789999999999999999988 357899999999999999999999999999999
Q ss_pred Cc-ccEEeeccCC
Q 015870 92 GK-PIRVMYSHRD 103 (399)
Q Consensus 92 g~-~i~v~~~~~~ 103 (399)
|+ .|+|.++...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999988644
No 296
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=3.6e-18 Score=129.77 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=76.7
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
....++|||+|||++++++||+++|++|| |++|+|+.+.+++++|||||+|.+.++|.+|+ .+|+..|+||.|+|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34568999999999999999999999999 77999999888999999999999999999999 88999999999999999
Q ss_pred eecHHHHHH
Q 015870 382 QRKEDRRAR 390 (399)
Q Consensus 382 ~~~~~~~~~ 390 (399)
.++...+..
T Consensus 121 ~~~~~~~~~ 129 (139)
T 2hgn_A 121 STTGASNGA 129 (139)
T ss_dssp CCSCC----
T ss_pred CCCCCCCCC
Confidence 987665443
No 297
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=7e-17 Score=119.84 Aligned_cols=76 Identities=18% Similarity=0.357 Sum_probs=69.3
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccE-EEEEeCCHHHHHHHHHHhcCceecC--eeEEEEEee
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS-GFVAFSTPEEASRALLEMNGKMVVS--KPLYVALAQ 382 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~ 382 (399)
..|+|+||++.+++++|+++|++||.|.+|++... .+|+ |||+|.+.++|.+|++.|||..|.| +.|+|+||+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 34679999999999999999999999999998764 2577 9999999999999999999999988 999999999
Q ss_pred ecH
Q 015870 383 RKE 385 (399)
Q Consensus 383 ~~~ 385 (399)
++.
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 764
No 298
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=8.1e-17 Score=117.10 Aligned_cols=82 Identities=23% Similarity=0.459 Sum_probs=73.9
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
.+....+.++|||+|||+++++++|+++|++||.|.++.+++ +||||+|.+.++|++|+..|++..+.|+.|
T Consensus 4 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 4 GSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 344556789999999999999999999999999999999874 399999999999999999999999999999
Q ss_pred EEeeccCCcc
Q 015870 96 RVMYSHRDPS 105 (399)
Q Consensus 96 ~v~~~~~~~~ 105 (399)
.|.++.....
T Consensus 76 ~v~~a~~~~~ 85 (103)
T 2dgu_A 76 EIVFAKPPDQ 85 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCcc
Confidence 9999976543
No 299
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=6.1e-17 Score=113.98 Aligned_cols=75 Identities=20% Similarity=0.336 Sum_probs=70.3
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 383 (399)
..++|||+|||+.+++++|+++|++| .|.++++. +++|||||+|.+.++|.+|++.|||..++|++|+|++|..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 56889999999999999999999999 99999985 4689999999999999999999999999999999999976
Q ss_pred c
Q 015870 384 K 384 (399)
Q Consensus 384 ~ 384 (399)
+
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 300
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=1.9e-17 Score=120.27 Aligned_cols=85 Identities=24% Similarity=0.493 Sum_probs=77.3
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+.++|||+|||+.+++++|+++|++||.|.+++++.+.+|.++|||||+|.+.++|.+|+. ++..++|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345689999999999999999999999999999999998889999999999999999999997 999999999999999
Q ss_pred eecHHHH
Q 015870 382 QRKEDRR 388 (399)
Q Consensus 382 ~~~~~~~ 388 (399)
.++....
T Consensus 84 ~~~~~~~ 90 (102)
T 2xs2_A 84 IRKQNLS 90 (102)
T ss_dssp EECC---
T ss_pred CcCcchh
Confidence 9776543
No 301
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1e-18 Score=130.27 Aligned_cols=86 Identities=23% Similarity=0.450 Sum_probs=79.4
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceE--------EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecC
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITS--------CKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~--------v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 373 (399)
.+.++|||+|||+.+++++|+++|++||.|.+ ++++.+. +++++|||||+|.+.++|.+|+..||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46789999999999999999999999999998 8888774 68899999999999999999999999999999
Q ss_pred eeEEEEEeeecHHHH
Q 015870 374 KPLYVALAQRKEDRR 388 (399)
Q Consensus 374 ~~l~v~~a~~~~~~~ 388 (399)
++|+|.+|+++..++
T Consensus 85 ~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 85 NPIKVSFATRRADFN 99 (116)
Confidence 999999999887654
No 302
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.8e-17 Score=118.68 Aligned_cols=79 Identities=30% Similarity=0.467 Sum_probs=72.5
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCc--CCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPF--GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~--G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 379 (399)
..+.++|||+|||+.+++++|+++|++| |.|.++++. +|||||+|.+.++|.+|+..||+..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4567899999999999999999999999 899999864 4699999999999999999999999999999999
Q ss_pred EeeecHHH
Q 015870 380 LAQRKEDR 387 (399)
Q Consensus 380 ~a~~~~~~ 387 (399)
||+++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpd_A 85 LAKPVDKD 92 (99)
T ss_dssp CCCCCCCC
T ss_pred ECCCCCCC
Confidence 99987643
No 303
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=1.6e-17 Score=113.33 Aligned_cols=75 Identities=16% Similarity=0.426 Sum_probs=70.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 25 ~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
+|||+|||+++++++|+++|++||+|.++.++.++.++.++|+|||+|.+.++|.+|+.. ++..+.|+.+.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988899999999999999999999995 888999999998764
No 304
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.3e-17 Score=117.31 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=72.7
Q ss_pred CCCCCCccEEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CCCCCc
Q 015870 17 NANQFGTTSLYVGDLEAN-VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF--TPLNGK 93 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~-~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~--~~~~g~ 93 (399)
-....++++|||+|||++ +++++|+++|++||.|.++.+++. +|+|||+|.+.++|.+|+..|++ ..+.|+
T Consensus 19 ~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 19 DQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp CCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred cccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 334778999999999998 999999999999999999999743 47999999999999999998864 458999
Q ss_pred ccEEeeccCCcc
Q 015870 94 PIRVMYSHRDPS 105 (399)
Q Consensus 94 ~i~v~~~~~~~~ 105 (399)
+|.|.++.....
T Consensus 93 ~l~V~~a~~~~~ 104 (112)
T 1x4f_A 93 CVKVDLSEKYKK 104 (112)
T ss_dssp CCEEEEECSCSS
T ss_pred EEEEEECccccc
Confidence 999999876543
No 305
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=1.4e-16 Score=115.20 Aligned_cols=83 Identities=16% Similarity=0.272 Sum_probs=74.0
Q ss_pred ccCCceEEEecCCC-----cCCHHHHHHhhcCcCCceEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHhcCceecCe
Q 015870 302 KFQGANLYIKNLDD-----SIDDEKLKQLFSPFGSITSCKVMRDP--SGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374 (399)
Q Consensus 302 ~~~~~~l~v~nl~~-----~~~~~dl~~~f~~~G~v~~v~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 374 (399)
..++++|+|.|+.. .-+++||++.|++||.|.+++++.++ .++++|+|||+|.+.++|.+|++.|||+.++||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45789999999973 23689999999999999999998875 367899999999999999999999999999999
Q ss_pred eEEEEEeeec
Q 015870 375 PLYVALAQRK 384 (399)
Q Consensus 375 ~l~v~~a~~~ 384 (399)
.|+|.|+.+.
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999999863
No 306
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-17 Score=117.51 Aligned_cols=81 Identities=25% Similarity=0.332 Sum_probs=72.2
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCC-ceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC-ceecCeeEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGS-ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG-KMVVSKPLYVA 379 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~-v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~-~~~~g~~l~v~ 379 (399)
..+.++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..++|+.|+|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 346789999999999999999999999999 6666653 368999999999999999999999 99999999999
Q ss_pred EeeecHHHH
Q 015870 380 LAQRKEDRR 388 (399)
Q Consensus 380 ~a~~~~~~~ 388 (399)
+++++..+.
T Consensus 79 ~a~~~~~~~ 87 (93)
T 2cqh_A 79 YSVSKKLRS 87 (93)
T ss_dssp ECCCCCCCC
T ss_pred EccCccccC
Confidence 999876543
No 307
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=121.26 Aligned_cols=89 Identities=22% Similarity=0.311 Sum_probs=75.0
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
.....++++|||+|||+++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+..|++..+.|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34456789999999999999999999999999884332222223788889999999999999999999999999999999
Q ss_pred EeeccCCcc
Q 015870 97 VMYSHRDPS 105 (399)
Q Consensus 97 v~~~~~~~~ 105 (399)
|.++.....
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 999976543
No 308
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=8.3e-17 Score=113.14 Aligned_cols=78 Identities=18% Similarity=0.417 Sum_probs=63.4
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee--cCeeEEEE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYVA 379 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~ 379 (399)
..+..+|||+|||+++++++|+++|++||.|.+++++.+ ++|||||+|.+.++|.+ +++..+ .|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 456789999999999999999999999999999998874 68999999999999983 455554 59999999
Q ss_pred EeeecHHH
Q 015870 380 LAQRKEDR 387 (399)
Q Consensus 380 ~a~~~~~~ 387 (399)
+|+++.++
T Consensus 80 ~a~~k~~~ 87 (89)
T 3d2w_A 80 NAEPKHNK 87 (89)
T ss_dssp ECC-----
T ss_pred EcCCCCcC
Confidence 99987654
No 309
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=115.04 Aligned_cols=88 Identities=24% Similarity=0.276 Sum_probs=76.2
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEE-EEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i-~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 90 (399)
+.....+....+++|||+|||+++++++|+++|++||.|.++ .++.++.++ .|||+|.+.++|.+|+..|++..+
T Consensus 4 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~ 79 (96)
T 2e44_A 4 GSSGSVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQL 79 (96)
T ss_dssp CCCSCCCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCCCCCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEE
Confidence 344445556678999999999999999999999999999999 577765443 499999999999999999999999
Q ss_pred CCcccEEeeccCC
Q 015870 91 NGKPIRVMYSHRD 103 (399)
Q Consensus 91 ~g~~i~v~~~~~~ 103 (399)
.|++|.|.++.+.
T Consensus 80 ~g~~l~V~~a~~~ 92 (96)
T 2e44_A 80 ENFTLKVAYIPDE 92 (96)
T ss_dssp SSCBCEEEECCCC
T ss_pred CCcEEEEEEcCcc
Confidence 9999999998765
No 310
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.69 E-value=3.8e-18 Score=155.72 Aligned_cols=84 Identities=18% Similarity=0.361 Sum_probs=78.3
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
.+.++|||+|||+.+++++|+.+|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|||..|+|+.|.|.||
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456799999999999999999999999999999998874 7889999999999999999999999999999999999999
Q ss_pred eecHH
Q 015870 382 QRKED 386 (399)
Q Consensus 382 ~~~~~ 386 (399)
+++..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87543
No 311
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.2e-16 Score=115.73 Aligned_cols=77 Identities=19% Similarity=0.428 Sum_probs=70.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
+..+++|||+|||.++++++|+++|++||.|.++.+.. ++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 55679999999999999999999999999999999873 357999999999999999999999999999999998
Q ss_pred ccC
Q 015870 100 SHR 102 (399)
Q Consensus 100 ~~~ 102 (399)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 764
No 312
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=117.16 Aligned_cols=81 Identities=26% Similarity=0.558 Sum_probs=74.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
+.+.++|||+|||.++++++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 667899999999999999999999999999999999875 46999999999999999999999999999999999
Q ss_pred ccCCccc
Q 015870 100 SHRDPSL 106 (399)
Q Consensus 100 ~~~~~~~ 106 (399)
+...+..
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9876544
No 313
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.69 E-value=5.1e-17 Score=120.43 Aligned_cols=83 Identities=24% Similarity=0.303 Sum_probs=65.7
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 13 ~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
+...++..+..++|||+|||+++++++|+++|++||.|.++.++.+ |||||+|.+.++|++|+..||+..|.|
T Consensus 6 ~r~gpp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 6 GRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp -----------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3344555678899999999999999999999999999999999765 699999999999999999999999999
Q ss_pred cc-----cEEeeccC
Q 015870 93 KP-----IRVMYSHR 102 (399)
Q Consensus 93 ~~-----i~v~~~~~ 102 (399)
+. ++|..+..
T Consensus 79 r~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 79 HEGETAYIRVKVDGP 93 (115)
T ss_dssp TTSCCCBCEEEECC-
T ss_pred cEeeeEEEEeccCCC
Confidence 98 66655543
No 314
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=6.1e-17 Score=129.32 Aligned_cols=83 Identities=29% Similarity=0.468 Sum_probs=78.8
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
.++++|||+|||+.+++++|+++|++||.|.+|.+..+.++.++|||||+|.+.++|.+|+..||+..++|++|+|.||.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45789999999999999999999999999999999988889999999999999999999999999999999999999998
Q ss_pred ecH
Q 015870 383 RKE 385 (399)
Q Consensus 383 ~~~ 385 (399)
+..
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 654
No 315
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=6.1e-17 Score=124.82 Aligned_cols=77 Identities=18% Similarity=0.348 Sum_probs=70.3
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecC--eeEEEEEeee
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS--KPLYVALAQR 383 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~~ 383 (399)
.+|+|+||++.+++++|+++|++||.|.+|++.... ++|||||+|.+.++|.+|++.|||..|.| ++|+|+||++
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 458899999999999999999999999999987542 57899999999999999999999999965 9999999998
Q ss_pred cH
Q 015870 384 KE 385 (399)
Q Consensus 384 ~~ 385 (399)
+.
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 74
No 316
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.5e-17 Score=113.55 Aligned_cols=74 Identities=20% Similarity=0.360 Sum_probs=69.2
Q ss_pred eEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 307 ~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
+|||+|||+.+++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|+. +++..++|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999998875 68899999999999999999997 5999999999999886
No 317
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=1.2e-16 Score=116.80 Aligned_cols=82 Identities=26% Similarity=0.535 Sum_probs=72.3
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcc
Q 015870 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (399)
Q Consensus 15 ~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~ 94 (399)
..+..+.++++|||+|||+++++++|+++|++||.|.++.+. +|||||+|.+.++|.+|+..|++..+.|+.
T Consensus 23 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 23 HRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp -----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred cccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 334557888999999999999999999999999999999997 369999999999999999999999999999
Q ss_pred cEEeeccCCc
Q 015870 95 IRVMYSHRDP 104 (399)
Q Consensus 95 i~v~~~~~~~ 104 (399)
|.|.++...+
T Consensus 95 l~V~~a~~~~ 104 (108)
T 2jvo_A 95 LEVVYSKLPA 104 (108)
T ss_dssp CEEESCSCCC
T ss_pred EEEEEecCCC
Confidence 9999987643
No 318
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=2e-16 Score=113.31 Aligned_cols=81 Identities=21% Similarity=0.409 Sum_probs=71.0
Q ss_pred CCCCCCCCccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 015870 15 GANANQFGTTSLYVGDLEA-NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (399)
Q Consensus 15 ~~~~~~~~~~~l~v~nLP~-~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~ 93 (399)
......+++++|||+|||+ ++++++|+++|++||.|.++.+. +|||||+|.+.++|.+|+..|++..+.|+
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 14 LVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp -----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred cccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3445577899999999998 99999999999999999999884 46999999999999999999999999999
Q ss_pred ccEEeeccCC
Q 015870 94 PIRVMYSHRD 103 (399)
Q Consensus 94 ~i~v~~~~~~ 103 (399)
.|+|.++...
T Consensus 86 ~l~V~~a~~~ 95 (97)
T 2xnq_A 86 KLILEVSSSN 95 (97)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEecCCC
Confidence 9999998653
No 319
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=1.4e-16 Score=117.87 Aligned_cols=73 Identities=22% Similarity=0.298 Sum_probs=67.3
Q ss_pred EEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccE-EEEEeCCHHHHHHHHHHhcCceecC--eeEEEEEeeec
Q 015870 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS-GFVAFSTPEEASRALLEMNGKMVVS--KPLYVALAQRK 384 (399)
Q Consensus 308 l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~~~ 384 (399)
|+|+||++.+++++|+++|++||.|.+|++... .|| |||+|.+.++|..|++.|||..|.| ++|+|.||+++
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 679999999999999999999999999998763 376 9999999999999999999999987 69999999987
Q ss_pred H
Q 015870 385 E 385 (399)
Q Consensus 385 ~ 385 (399)
.
T Consensus 103 ~ 103 (124)
T 2e5i_A 103 R 103 (124)
T ss_dssp C
T ss_pred c
Confidence 4
No 320
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=117.27 Aligned_cols=80 Identities=16% Similarity=0.252 Sum_probs=72.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
...+..++|||+|||+++++++|+++|++||.|.++.+.. ++|+|||+|.+.++|++|+..||+..+.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 78 (111)
T 1whx_A 5 SSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYL 78 (111)
T ss_dssp GTSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999999999999999999999999999998864 3469999999999999999999999999999999
Q ss_pred eeccCC
Q 015870 98 MYSHRD 103 (399)
Q Consensus 98 ~~~~~~ 103 (399)
.++...
T Consensus 79 ~~a~~~ 84 (111)
T 1whx_A 79 EWAPIG 84 (111)
T ss_dssp EEEETT
T ss_pred EECCCC
Confidence 998754
No 321
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=2e-16 Score=126.36 Aligned_cols=83 Identities=27% Similarity=0.447 Sum_probs=78.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
..++++|||+|||+++++++|+++|++||.|.+|.+..+. ++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4557899999999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred ccCC
Q 015870 100 SHRD 103 (399)
Q Consensus 100 ~~~~ 103 (399)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8654
No 322
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=2e-16 Score=113.27 Aligned_cols=79 Identities=23% Similarity=0.446 Sum_probs=70.2
Q ss_pred CCCCCccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 18 ANQFGTTSLYVGDLEA-NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~-~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
....++++|||+|||+ ++++++|+++|++||.|.++.+. +|||||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3467899999999998 99999999999999999999984 36999999999999999999999999999999
Q ss_pred EeeccCCc
Q 015870 97 VMYSHRDP 104 (399)
Q Consensus 97 v~~~~~~~ 104 (399)
|.++....
T Consensus 77 V~~a~~~~ 84 (96)
T 2kvi_A 77 LEVSSSNA 84 (96)
T ss_dssp EEEEECCC
T ss_pred EEEcCcCC
Confidence 99987553
No 323
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.7e-16 Score=114.93 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=73.0
Q ss_pred ceEEEecC----CCcCCHHHHHHhhcCcCCceEEEEeeCC-CCCcccEEEEEeCC----HHH----HHHHHH--HhcCce
Q 015870 306 ANLYIKNL----DDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST----PEE----ASRALL--EMNGKM 370 (399)
Q Consensus 306 ~~l~v~nl----~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~~~~~g~afV~f~~----~~~----A~~A~~--~l~~~~ 370 (399)
..|+|+|| |+.+++++|+++|+.||.|.++.++.++ +|+++|||||+|.+ .++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999887 78999999999996 433 888988 789999
Q ss_pred ecCeeEEEEEeeecHH
Q 015870 371 VVSKPLYVALAQRKED 386 (399)
Q Consensus 371 ~~g~~l~v~~a~~~~~ 386 (399)
|+|++|+|.+.++..-
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999999987665
No 324
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.4e-16 Score=111.85 Aligned_cols=84 Identities=30% Similarity=0.481 Sum_probs=74.3
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhcc--CCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 14 ~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~--g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
........+.++|||+|||+++++++|+++|++| |.|..+.+.+ |||||+|.+.++|.+|+..|++..+.
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~--------g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 6 SGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR--------DYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CCCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS--------SEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred cccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC--------CeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3445556788999999999999999999999999 8999887753 59999999999999999999999999
Q ss_pred CcccEEeeccCCcc
Q 015870 92 GKPIRVMYSHRDPS 105 (399)
Q Consensus 92 g~~i~v~~~~~~~~ 105 (399)
|+.|+|.++.....
T Consensus 78 g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 78 GSPIEVTLAKPVDK 91 (99)
T ss_dssp TEEEEEECCCCCCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999976543
No 325
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=5.1e-16 Score=119.69 Aligned_cols=84 Identities=18% Similarity=0.170 Sum_probs=73.6
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC--cc
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG--KP 94 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g--~~ 94 (399)
.+.+....+|+|+|||+.+|+++|+++|++||.|.+|.++.+. ++|+|||+|.+.++|.+|+..||+..|.| ++
T Consensus 40 ~~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~ 115 (164)
T 1sjr_A 40 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 115 (164)
T ss_dssp CCCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSC
T ss_pred CCCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcE
Confidence 3445666789999999999999999999999999999987542 45799999999999999999999999965 99
Q ss_pred cEEeeccCCc
Q 015870 95 IRVMYSHRDP 104 (399)
Q Consensus 95 i~v~~~~~~~ 104 (399)
|+|.++....
T Consensus 116 L~V~~Ak~~~ 125 (164)
T 1sjr_A 116 LRIDFSKLTS 125 (164)
T ss_dssp EEEEECSSSS
T ss_pred EEEEEecCCc
Confidence 9999998653
No 326
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=112.86 Aligned_cols=78 Identities=31% Similarity=0.467 Sum_probs=71.4
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
.+.++|||+|+ .+++++|+++|++||.|.++++. +++|||||+|.+.++|.+|+..||+..++|++|+|.||+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 46789999996 89999999999999999999985 358999999999999999999999999999999999999
Q ss_pred ecHHH
Q 015870 383 RKEDR 387 (399)
Q Consensus 383 ~~~~~ 387 (399)
++..+
T Consensus 86 ~~~~~ 90 (97)
T 1x5p_A 86 KQPML 90 (97)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 327
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=4e-16 Score=114.89 Aligned_cols=79 Identities=23% Similarity=0.400 Sum_probs=71.2
Q ss_pred CCCCccEEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 19 NQFGTTSLYVGDLEAN-VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~-~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
....+++|||+|||++ +++++|+++|++||.|.++.+ .+|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999988 3469999999999999999999999999999999
Q ss_pred eeccCCcc
Q 015870 98 MYSHRDPS 105 (399)
Q Consensus 98 ~~~~~~~~ 105 (399)
.++.....
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99975443
No 328
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=6.7e-17 Score=116.02 Aligned_cols=80 Identities=26% Similarity=0.344 Sum_probs=72.0
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEE-EeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK-VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..+++|||+|||+.+++++|+++|++||.|.+++ ++.+.. .+.|||+|.+.++|.+|+..|||..++|++|+|.+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3568999999999999999999999999999995 666532 344999999999999999999999999999999999
Q ss_pred eecH
Q 015870 382 QRKE 385 (399)
Q Consensus 382 ~~~~ 385 (399)
++++
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9874
No 329
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.4e-16 Score=110.61 Aligned_cols=87 Identities=18% Similarity=0.325 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 015870 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (399)
Q Consensus 11 ~~~~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 90 (399)
++..+......+.++|||+|| ++++++|+++|++||.|.++.+. .++|+|||+|.+.++|.+|+..|++..+
T Consensus 3 s~s~~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 74 (97)
T 1x5p_A 3 SGSSGERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV 74 (97)
T ss_dssp SSCSSCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE
T ss_pred CCCCCccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 334455566778899999996 89999999999999999999884 3457999999999999999999999999
Q ss_pred CCcccEEeeccCCcc
Q 015870 91 NGKPIRVMYSHRDPS 105 (399)
Q Consensus 91 ~g~~i~v~~~~~~~~ 105 (399)
.|+.|+|.++...+.
T Consensus 75 ~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 75 ESVQLKVNIARKQPM 89 (97)
T ss_dssp TTEEEEEECCSSCCC
T ss_pred CCeEEEEEECCCCCC
Confidence 999999999976544
No 330
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.66 E-value=1.8e-16 Score=132.10 Aligned_cols=81 Identities=19% Similarity=0.386 Sum_probs=76.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g--~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
..++|||+|||+++|+++|+++|++|| .|.+|.|+.++.+++++|||||+|.+.++|++|+..|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 677899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 015870 100 SHR 102 (399)
Q Consensus 100 ~~~ 102 (399)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 331
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=7.6e-17 Score=119.47 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=68.1
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee-----EEE
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP-----LYV 378 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~-----l~v 378 (399)
..++|||+|||+.++++||+++|++||.|.++.++.+ |||||+|.+.++|.+|++.||+..|+|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 4588999999999999999999999999999998765 89999999999999999999999999998 788
Q ss_pred EEeeecHHHH
Q 015870 379 ALAQRKEDRR 388 (399)
Q Consensus 379 ~~a~~~~~~~ 388 (399)
..++++...+
T Consensus 89 ~~~~~~~~~~ 98 (115)
T 3beg_B 89 KVDGPRSPSY 98 (115)
T ss_dssp EECC----CC
T ss_pred ccCCCCCCCC
Confidence 8777655433
No 332
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=7.6e-17 Score=117.11 Aligned_cols=84 Identities=23% Similarity=0.487 Sum_probs=77.3
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
+.....+++|||+|||+++++++|+++|++||.|.++.++.+. +|.++|||||+|.+.++|++|+. ++..+.|+.|.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 3 PEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp CCCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 3456678999999999999999999999999999999999997 89999999999999999999998 88889999999
Q ss_pred EeeccCC
Q 015870 97 VMYSHRD 103 (399)
Q Consensus 97 v~~~~~~ 103 (399)
|.++...
T Consensus 80 v~~a~~~ 86 (102)
T 2xs2_A 80 LGPAIRK 86 (102)
T ss_dssp EEEEEEC
T ss_pred EEECCcC
Confidence 9887643
No 333
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=113.63 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=70.0
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 383 (399)
..++|||+|||+.+++++|+++|++||.|.+| +....+++ ||||+|.+.++|.+|+. ||+..++|+.|+|.++.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 45799999999999999999999999999988 44433443 99999999999999999 999999999999999987
Q ss_pred cHHH
Q 015870 384 KEDR 387 (399)
Q Consensus 384 ~~~~ 387 (399)
+..+
T Consensus 82 ~~~~ 85 (94)
T 2e5g_A 82 KEFQ 85 (94)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6654
No 334
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=6.9e-18 Score=125.71 Aligned_cols=87 Identities=24% Similarity=0.446 Sum_probs=80.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEE--------EEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS--------VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~--------i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 90 (399)
+..++++|||+|||+++++++|+++|++||.|.+ +.++.++.++.++|||||+|.+.++|++|+..|++..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567899999999999999999999999999998 89999888899999999999999999999999999999
Q ss_pred CCcccEEeeccCCcc
Q 015870 91 NGKPIRVMYSHRDPS 105 (399)
Q Consensus 91 ~g~~i~v~~~~~~~~ 105 (399)
.|+.|+|.++...+.
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999876543
No 335
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=114.47 Aligned_cols=83 Identities=19% Similarity=0.377 Sum_probs=74.0
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
....++.++|||+|||+++++++|+++|++||.|..+ ..++.++|+|||+|.+.++|.+|+..|++..+.|+.|.
T Consensus 10 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3456788999999999999999999999999987655 24788899999999999999999999999999999999
Q ss_pred EeeccCCc
Q 015870 97 VMYSHRDP 104 (399)
Q Consensus 97 v~~~~~~~ 104 (399)
|.++....
T Consensus 85 v~~a~~~~ 92 (96)
T 1fjc_A 85 LYYTGEKG 92 (96)
T ss_dssp EEECSSSC
T ss_pred EEEcCCCC
Confidence 99986543
No 336
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.5e-16 Score=109.87 Aligned_cols=79 Identities=23% Similarity=0.341 Sum_probs=70.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEe
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (399)
.....++|||+|||+++++++|+++|++||.|.+| +.++.++. ||||+|.+.++|.+|+. |++..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 45677899999999999999999999999999987 55555555 99999999999999999 99999999999999
Q ss_pred eccCC
Q 015870 99 YSHRD 103 (399)
Q Consensus 99 ~~~~~ 103 (399)
++...
T Consensus 78 ~a~~~ 82 (94)
T 2e5g_A 78 PREQK 82 (94)
T ss_dssp CSCCS
T ss_pred ECCcC
Confidence 87644
No 337
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=111.74 Aligned_cols=79 Identities=30% Similarity=0.482 Sum_probs=69.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CCCCCcccE
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF-TPLNGKPIR 96 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~-v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~-~~~~g~~i~ 96 (399)
...+.++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||+ ..+.|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4567899999999999999999999999998 6555553 246999999999999999999999 899999999
Q ss_pred EeeccCCc
Q 015870 97 VMYSHRDP 104 (399)
Q Consensus 97 v~~~~~~~ 104 (399)
|.++....
T Consensus 77 v~~a~~~~ 84 (93)
T 2cqh_A 77 VDYSVSKK 84 (93)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99997653
No 338
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=4.3e-16 Score=109.57 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=71.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
.+.+++|||+|||+++++++|+++|++| .|.++.+. .++|+|||+|.+.++|++|+..|++..+.|++|+|.+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 3568999999999999999999999999 99999884 4668999999999999999999999999999999999
Q ss_pred ccCCc
Q 015870 100 SHRDP 104 (399)
Q Consensus 100 ~~~~~ 104 (399)
++.+.
T Consensus 75 a~~~~ 79 (88)
T 1wg1_A 75 QPTDA 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 87654
No 339
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=3.9e-16 Score=116.37 Aligned_cols=80 Identities=30% Similarity=0.452 Sum_probs=71.7
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEe
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 381 (399)
..++++|||+|+ .+++++|+++|++||.|.++++. .++|||||+|.+.++|.+|+..|||..++|+.|+|.|+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 456789999996 69999999999999999999986 35899999999999999999999999999999999999
Q ss_pred eecHHHH
Q 015870 382 QRKEDRR 388 (399)
Q Consensus 382 ~~~~~~~ 388 (399)
+++....
T Consensus 109 ~~~~~~~ 115 (121)
T 2bz2_A 109 RKQPMLD 115 (121)
T ss_dssp CSSCC--
T ss_pred CCCCCCC
Confidence 9875443
No 340
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.64 E-value=6.6e-16 Score=111.69 Aligned_cols=84 Identities=15% Similarity=0.246 Sum_probs=73.0
Q ss_pred ccCCceEEEecCC--CcCC--------HHHHHHhhcCcCCceEEEEeeCCC---CCcccEEEEEeCCHHHHHHHHHHhcC
Q 015870 302 KFQGANLYIKNLD--DSID--------DEKLKQLFSPFGSITSCKVMRDPS---GISRGSGFVAFSTPEEASRALLEMNG 368 (399)
Q Consensus 302 ~~~~~~l~v~nl~--~~~~--------~~dl~~~f~~~G~v~~v~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~ 368 (399)
+.++++|.|.|+- .... ++||++.|++||.|.+++++++.. ++++|+|||+|.+.++|.+|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 3578899999993 3333 369999999999999999988764 36799999999999999999999999
Q ss_pred ceecCeeEEEEEeeecH
Q 015870 369 KMVVSKPLYVALAQRKE 385 (399)
Q Consensus 369 ~~~~g~~l~v~~a~~~~ 385 (399)
+.++||.|+|+|+.+..
T Consensus 82 ~~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPDS 98 (105)
T ss_dssp CEETTEECEEEEECHHH
T ss_pred CEeCCCEEEEEEeCHHH
Confidence 99999999999998654
No 341
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=7.6e-16 Score=108.32 Aligned_cols=71 Identities=20% Similarity=0.454 Sum_probs=66.5
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCc----C-------CceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPF----G-------SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~----G-------~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 371 (399)
.+.++|||+|||+.+++++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+ .|||..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 356899999999999999999999999 8 8999998765 799999999999999999 9999999
Q ss_pred cCeeEEEE
Q 015870 372 VSKPLYVA 379 (399)
Q Consensus 372 ~g~~l~v~ 379 (399)
+|+.|+|+
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99999987
No 342
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=2.5e-15 Score=111.45 Aligned_cols=86 Identities=20% Similarity=0.221 Sum_probs=72.1
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 14 ~~~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~-a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
++....+.+-..|+|+|||+.+|+++|+++|++||.|.+|.++.+. +|+ |||+|.+.++|++|+..|||..|.|
T Consensus 19 ~~~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 19 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp ------CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred ccccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 3355556777888899999999999999999999999999887642 356 9999999999999999999999988
Q ss_pred --cccEEeeccCCc
Q 015870 93 --KPIRVMYSHRDP 104 (399)
Q Consensus 93 --~~i~v~~~~~~~ 104 (399)
++|+|.+++...
T Consensus 94 ~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 94 ACCTLRIDFSKLTS 107 (130)
T ss_dssp TEEEEEEEECSCSS
T ss_pred CCcEEEEEecCCCc
Confidence 899999997653
No 343
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=4.2e-15 Score=109.96 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=68.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCCCCC--ccc
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNFSNAQEAARALEMLNFTPLNG--KPI 95 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~-a~V~f~~~~~A~~a~~~l~~~~~~g--~~i 95 (399)
.+.....|+|+|||+.+++++|+++|++||.|.+|.++.. .|+ |||+|.+.++|..|+..|||..|.| +.|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 3444455779999999999999999999999999999652 165 9999999999999999999999987 689
Q ss_pred EEeeccCC
Q 015870 96 RVMYSHRD 103 (399)
Q Consensus 96 ~v~~~~~~ 103 (399)
+|.++...
T Consensus 95 ~V~~Ak~~ 102 (124)
T 2e5i_A 95 KIEYARPT 102 (124)
T ss_dssp EEECCSCS
T ss_pred EEEEecCC
Confidence 99998755
No 344
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=5.1e-16 Score=128.24 Aligned_cols=86 Identities=22% Similarity=0.397 Sum_probs=71.8
Q ss_pred ccCCceEEEecCCCcC---------CHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee-
Q 015870 302 KFQGANLYIKNLDDSI---------DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV- 371 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~---------~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~- 371 (399)
....++|||+||+..+ ++++|+++|++||.|.+|+++.. +|||||+|.+.++|..|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 4567899999999998 79999999999999999999865 89999999999999999999999999
Q ss_pred -----------cCeeEEEEEeeecHHHHHHhh
Q 015870 372 -----------VSKPLYVALAQRKEDRRARLQ 392 (399)
Q Consensus 372 -----------~g~~l~v~~a~~~~~~~~~~~ 392 (399)
.|+.|.|.||+++.....+.+
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pnp~~~~~ 237 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPDPAAQKR 237 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----------
T ss_pred ccccccccccCCCCEEEEEEccCCCCHHHhhh
Confidence 899999999997765554443
No 345
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-16 Score=111.54 Aligned_cols=79 Identities=14% Similarity=0.311 Sum_probs=67.8
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
.++++|||+|||+.+++++|+++|++||.|.+++++.+ ++|||||+|.+.++|.+|+. ....+.|+.|+|.+++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 35789999999999999999999999999999998765 68999999999999976432 1345589999999999
Q ss_pred ecHHH
Q 015870 383 RKEDR 387 (399)
Q Consensus 383 ~~~~~ 387 (399)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 346
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=112.74 Aligned_cols=79 Identities=18% Similarity=0.331 Sum_probs=67.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST---RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 19 ~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~---~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
....+++|||+|||+++++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|++|+..+++ ++|+.+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEE
Confidence 345679999999999999999999999999999 888877766 78999999999999999999998842 566666
Q ss_pred EEeec
Q 015870 96 RVMYS 100 (399)
Q Consensus 96 ~v~~~ 100 (399)
.+..+
T Consensus 81 ~~~~~ 85 (114)
T 2dnl_A 81 LCVSS 85 (114)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 65543
No 347
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.8e-15 Score=109.57 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=69.9
Q ss_pred CCCCCccEEEE--cCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC-----
Q 015870 18 ANQFGTTSLYV--GDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL----- 90 (399)
Q Consensus 18 ~~~~~~~~l~v--~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~----- 90 (399)
....++++||| +|||+++++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|+..||+..+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34567889999 779999999999999999999999987642 47999999999999999999999877
Q ss_pred CCcccEEeeccCCc
Q 015870 91 NGKPIRVMYSHRDP 104 (399)
Q Consensus 91 ~g~~i~v~~~~~~~ 104 (399)
.|+++.|.++..-+
T Consensus 94 ~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 94 QKITLYLNFVEKVQ 107 (114)
T ss_dssp CEEECEEEEESCCC
T ss_pred CCcEEEEEecccCc
Confidence 57889998776443
No 348
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=1.9e-15 Score=122.49 Aligned_cols=82 Identities=17% Similarity=0.239 Sum_probs=73.8
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeee
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 383 (399)
..++|||+|||+.+++++|+++|++||.|.+|+++++.++.++|||||+|.+.++|.+|+..++ ..++|+.|.|.++++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 3479999999999999999999999999999999998889999999999999999999997654 599999999999875
Q ss_pred cHH
Q 015870 384 KED 386 (399)
Q Consensus 384 ~~~ 386 (399)
-.+
T Consensus 187 y~~ 189 (193)
T 2voo_A 187 YFA 189 (193)
T ss_dssp C--
T ss_pred HHH
Confidence 433
No 349
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=7.5e-16 Score=111.58 Aligned_cols=79 Identities=14% Similarity=0.211 Sum_probs=71.5
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCCC
Q 015870 24 TSLYVGDL----EANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN----AQE----AARALE--MLNFTP 89 (399)
Q Consensus 24 ~~l~v~nL----P~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~----~~~----A~~a~~--~l~~~~ 89 (399)
..|+|+|| |+.+++++|+++|++||+|.++.++.|+.||.++|+|||+|.+ +++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 899988 679999
Q ss_pred CCCcccEEeeccC
Q 015870 90 LNGKPIRVMYSHR 102 (399)
Q Consensus 90 ~~g~~i~v~~~~~ 102 (399)
|.|+.|+|..-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999987643
No 350
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=3.6e-16 Score=121.01 Aligned_cols=81 Identities=26% Similarity=0.370 Sum_probs=72.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEE--------EEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV--------RVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i--------~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
..++++|||+|||+++|+++|+++|++||.|..+ .+. .++.++|||||+|.+.++|.+|+..||+..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 5677999999999999999999999999988763 332 36888999999999999999999999999999
Q ss_pred CcccEEeeccCC
Q 015870 92 GKPIRVMYSHRD 103 (399)
Q Consensus 92 g~~i~v~~~~~~ 103 (399)
|+.|.|.++...
T Consensus 119 g~~l~V~~a~~~ 130 (143)
T 3egn_A 119 GKPMVVQFARSA 130 (143)
T ss_dssp TEECEEEECCCS
T ss_pred CcEEEEEECCCC
Confidence 999999998654
No 351
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=8.6e-16 Score=113.72 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=67.8
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC-C---CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-S---GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~-~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 378 (399)
...++|||+|||+.+++++|+++|++||.|. +.++.+. + |+++|||||+|.+.++|.+|++.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 7776665 3 6899999999999999999999984 367777777
Q ss_pred EEeeecH
Q 015870 379 ALAQRKE 385 (399)
Q Consensus 379 ~~a~~~~ 385 (399)
..+.+..
T Consensus 83 ~~~~~~~ 89 (114)
T 2dnl_A 83 VSSPTIK 89 (114)
T ss_dssp ECCSSSC
T ss_pred ccCCCcC
Confidence 6655443
No 352
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=5.9e-15 Score=106.55 Aligned_cols=84 Identities=12% Similarity=0.159 Sum_probs=74.2
Q ss_pred CCCccEEEEcCCCC-----CCCHHHHHHHHhccCCeEEEEEeeeCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 015870 20 QFGTTSLYVGDLEA-----NVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (399)
Q Consensus 20 ~~~~~~l~v~nLP~-----~~~~~~l~~~f~~~g~v~~i~~~~~~~~-~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~ 93 (399)
+.++++|+|+|+.. +-++++|++.|++||.|.++.++.+..+ +.++|+|||+|.+.++|.+|+..||+..|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45789999999973 2378999999999999999999988644 67899999999999999999999999999999
Q ss_pred ccEEeeccCC
Q 015870 94 PIRVMYSHRD 103 (399)
Q Consensus 94 ~i~v~~~~~~ 103 (399)
.|.|.++...
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999998653
No 353
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.59 E-value=5e-16 Score=141.77 Aligned_cols=156 Identities=16% Similarity=0.310 Sum_probs=108.7
Q ss_pred CCCCCCCHHHHHHHHhccCCeEEEEEee----eC-CCCCcccEE--EEEeCCHHHHHHHHHHhCCCCCCC----------
Q 015870 30 DLEANVTDSQLYDLFNQMGQVVSVRVCR----DL-STRRSLGYG--YVNFSNAQEAARALEMLNFTPLNG---------- 92 (399)
Q Consensus 30 nLP~~~~~~~l~~~f~~~g~v~~i~~~~----~~-~~~~~~g~a--~V~f~~~~~A~~a~~~l~~~~~~g---------- 92 (399)
.||++ |..+|.++++|..+..+. +. .+....|++ |+.|.+..++..++..++.....+
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 46665 788999999988774332 11 122223344 777776554443333221111100
Q ss_pred -----cccEEeeccCCcccccCCCceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHH
Q 015870 93 -----KPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQ 166 (399)
Q Consensus 93 -----~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~v~f~~~~~a~ 166 (399)
..+.+......+.......++|||+|||+.+|+++|.++|+.||.|..|.++.+ .++.++|||||+|.+.++|.
T Consensus 79 ~~~~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 158 (437)
T 3pgw_S 79 QQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMH 158 (437)
T ss_pred HHHHHHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHH
Confidence 011111111222223344578999999999999999999999999999999988 57888999999999999999
Q ss_pred HHHHHhcCCccCCceeeeeccccc
Q 015870 167 KAIEKLNGMLLNDKQVYVGHFLRK 190 (399)
Q Consensus 167 ~a~~~l~~~~~~~~~~~v~~~~~~ 190 (399)
.|+..|++..|.|+.|.|.+....
T Consensus 159 ~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 159 SAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred HHHHHcCCCEECCEEEEEEEeCCC
Confidence 999999999999999999987644
No 354
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=3.9e-15 Score=104.63 Aligned_cols=73 Identities=22% Similarity=0.520 Sum_probs=67.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhcc----C-------CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT 88 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~----g-------~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~ 88 (399)
.++.++|||+|||+++++++|+++|++| | +|.++.+..+ +|||||+|.+.++|.+|+ .|++.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4678999999999999999999999999 8 8999988755 479999999999999999 89999
Q ss_pred CCCCcccEEee
Q 015870 89 PLNGKPIRVMY 99 (399)
Q Consensus 89 ~~~g~~i~v~~ 99 (399)
.+.|+.|+|..
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999864
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.3e-15 Score=108.58 Aligned_cols=83 Identities=24% Similarity=0.310 Sum_probs=71.2
Q ss_pred ccCCceEEEecCCCcCC-----------HHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 015870 302 KFQGANLYIKNLDDSID-----------DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~-----------~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 370 (399)
..++++|+|.||..... +++|+++|++||.|.++.+ .+. .++|||||+|.+.++|.+|+..|||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 45688999999954332 5899999999999999976 332 379999999999999999999999999
Q ss_pred ecCeeEEEEEeeecHHH
Q 015870 371 VVSKPLYVALAQRKEDR 387 (399)
Q Consensus 371 ~~g~~l~v~~a~~~~~~ 387 (399)
++|++|+|.|+.++...
T Consensus 89 ~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDY 105 (112)
T ss_dssp ETTEECEEEECCSCCCS
T ss_pred ECCcEEEEEEeCCCCCc
Confidence 99999999999987543
No 356
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=4.3e-15 Score=104.29 Aligned_cols=78 Identities=19% Similarity=0.373 Sum_probs=61.7
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC--CCCcc
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP--LNGKP 94 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~--~~g~~ 94 (399)
+..+.+.++|||+|||+++|+++|+++|++||.|.++.++.+ ++|||||+|.+.++|++ +++.. +.|+.
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~ 75 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGIS 75 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEE
Confidence 445778899999999999999999999999999999999864 56899999999999984 34444 56899
Q ss_pred cEEeeccCC
Q 015870 95 IRVMYSHRD 103 (399)
Q Consensus 95 i~v~~~~~~ 103 (399)
|.|.++.+.
T Consensus 76 v~v~~a~~k 84 (89)
T 3d2w_A 76 VHISNAEPK 84 (89)
T ss_dssp EEEEECC--
T ss_pred EEEEEcCCC
Confidence 999887643
No 357
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.58 E-value=4.9e-15 Score=109.04 Aligned_cols=81 Identities=16% Similarity=0.313 Sum_probs=71.5
Q ss_pred cCCceEEEecCCC--cC---CHHHHHHhhcCcCCceEEEEeeCCC-----CCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 015870 303 FQGANLYIKNLDD--SI---DDEKLKQLFSPFGSITSCKVMRDPS-----GISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (399)
Q Consensus 303 ~~~~~l~v~nl~~--~~---~~~dl~~~f~~~G~v~~v~~~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 372 (399)
+++++|+|.|+-. .+ .++||++.|++||.|.+|+++++.. +.++|+|||+|.+.++|.+|+..|||+.|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4789999999953 22 3589999999999999999988743 457899999999999999999999999999
Q ss_pred CeeEEEEEeee
Q 015870 373 SKPLYVALAQR 383 (399)
Q Consensus 373 g~~l~v~~a~~ 383 (399)
||.|+|.|+..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999875
No 358
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.58 E-value=9.9e-15 Score=108.71 Aligned_cols=81 Identities=19% Similarity=0.321 Sum_probs=71.1
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccE
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (399)
...+.++++|||+|| ++++++|+++|++||.|.++.+. .++|||||+|.+.++|.+|+..|++..+.|+.|.
T Consensus 33 ~~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 104 (121)
T 2bz2_A 33 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 104 (121)
T ss_dssp --CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 344567899999995 69999999999999999999885 3457999999999999999999999999999999
Q ss_pred EeeccCCcc
Q 015870 97 VMYSHRDPS 105 (399)
Q Consensus 97 v~~~~~~~~ 105 (399)
|.++...+.
T Consensus 105 V~~a~~~~~ 113 (121)
T 2bz2_A 105 VNIARKQPM 113 (121)
T ss_dssp EEECCSSCC
T ss_pred EEEeCCCCC
Confidence 999976543
No 359
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.3e-14 Score=105.55 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=75.1
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCC-----------HHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHH
Q 015870 12 NGGGANANQFGTTSLYVGDLEANVT-----------DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80 (399)
Q Consensus 12 ~~~~~~~~~~~~~~l~v~nLP~~~~-----------~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~ 80 (399)
|..+.+..+.++++|+|+||....+ +++|+++|++||.|.++.+ .++ .++|+|||+|.+.++|.+
T Consensus 4 g~~~~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~ 79 (112)
T 2dit_A 4 GSSGGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADY 79 (112)
T ss_dssp SCCSCCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHH
T ss_pred cccCCCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHH
Confidence 3444566788999999999954432 5789999999999999966 443 267899999999999999
Q ss_pred HHHHhCCCCCCCcccEEeeccCCcc
Q 015870 81 ALEMLNFTPLNGKPIRVMYSHRDPS 105 (399)
Q Consensus 81 a~~~l~~~~~~g~~i~v~~~~~~~~ 105 (399)
|+..||+..|.|+.|.|.++.....
T Consensus 80 Ai~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 80 CIQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp HHHHSTTCEETTEECEEEECCSCCC
T ss_pred HHHHcCCCEECCcEEEEEEeCCCCC
Confidence 9999999999999999999876543
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.56 E-value=1.6e-15 Score=109.59 Aligned_cols=71 Identities=18% Similarity=0.429 Sum_probs=61.6
Q ss_pred ecCCCcCCHHHHHH-----------hh-cCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 015870 311 KNLDDSIDDEKLKQ-----------LF-SPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (399)
Q Consensus 311 ~nl~~~~~~~dl~~-----------~f-~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 378 (399)
.|||..+++++|++ .| ++||.|.+++++++..++++|+|||+|.+.++|.+|+..|||..++||+|+|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 44555555655554 45 9999999999998888889999999999999999999999999999999999
Q ss_pred EEe
Q 015870 379 ALA 381 (399)
Q Consensus 379 ~~a 381 (399)
.|+
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 361
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.2e-15 Score=104.57 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=65.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
..++++|||+|||+++++++|+++|++||+|.++.++.+ ++|||||+|.+.++|++|... ...+.|+.|.|.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISN 74 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEe
Confidence 346799999999999999999999999999999998764 568999999999999865331 2345899999998
Q ss_pred ccCCcc
Q 015870 100 SHRDPS 105 (399)
Q Consensus 100 ~~~~~~ 105 (399)
+.+...
T Consensus 75 a~~~~~ 80 (88)
T 1wf0_A 75 AEPKHN 80 (88)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876543
No 362
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.54 E-value=2.1e-14 Score=116.36 Aligned_cols=79 Identities=16% Similarity=0.313 Sum_probs=72.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeecc
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (399)
..++|||+|||+++++++|+++|++||.|.+|.+.++. ++.++|+|||+|.+.++|.+|+..+ +..+.|+.|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 46899999999999999999999999999999999885 5889999999999999999999865 458999999999875
Q ss_pred C
Q 015870 102 R 102 (399)
Q Consensus 102 ~ 102 (399)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 363
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.52 E-value=7.1e-14 Score=102.03 Aligned_cols=80 Identities=13% Similarity=0.197 Sum_probs=68.8
Q ss_pred cCCceEEEecCCCcCC----------HHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 015870 303 FQGANLYIKNLDDSID----------DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~----------~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 372 (399)
.++++|.|.|+-..-. ++||++.|++||.|.++.+.++. ++|+|||+|.+.++|.+|++.|||++|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4678999999954322 25889999999999999986653 5899999999999999999999999999
Q ss_pred CeeEEEEEeeecH
Q 015870 373 SKPLYVALAQRKE 385 (399)
Q Consensus 373 g~~l~v~~a~~~~ 385 (399)
||.|+|.|+....
T Consensus 82 GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 82 GKMITAAYVPLPT 94 (114)
T ss_dssp TEECEEEEECHHH
T ss_pred CEEEEEEEEcHHH
Confidence 9999999997543
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=3.8e-14 Score=117.12 Aligned_cols=82 Identities=23% Similarity=0.461 Sum_probs=71.4
Q ss_pred CCCCCccEEEEcCCCCCC---------CHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 015870 18 ANQFGTTSLYVGDLEANV---------TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT 88 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~~---------~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~ 88 (399)
......++|||+|||..+ ++++|+++|++||+|.+|.++.+ +|+|||+|.+.++|+.|+..|++.
T Consensus 129 s~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 129 SFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp --CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCC
Confidence 346789999999999998 79999999999999999999854 479999999999999999999999
Q ss_pred CC------------CCcccEEeeccCCcc
Q 015870 89 PL------------NGKPIRVMYSHRDPS 105 (399)
Q Consensus 89 ~~------------~g~~i~v~~~~~~~~ 105 (399)
.+ .|+.|.|.++..++.
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCC
Confidence 99 899999999987654
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=7e-14 Score=101.00 Aligned_cols=83 Identities=17% Similarity=0.247 Sum_probs=72.6
Q ss_pred CCccEEEEcCC--CCCCC--------HHHHHHHHhccCCeEEEEEeeeCCC--CCcccEEEEEeCCHHHHHHHHHHhCCC
Q 015870 21 FGTTSLYVGDL--EANVT--------DSQLYDLFNQMGQVVSVRVCRDLST--RRSLGYGYVNFSNAQEAARALEMLNFT 88 (399)
Q Consensus 21 ~~~~~l~v~nL--P~~~~--------~~~l~~~f~~~g~v~~i~~~~~~~~--~~~~g~a~V~f~~~~~A~~a~~~l~~~ 88 (399)
.++++|.|+|+ |..+. +++|++.|++||.|.++.|+++..+ +.++|+|||+|.+.++|.+|+..||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46899999998 55554 3689999999999999999988654 357899999999999999999999999
Q ss_pred CCCCcccEEeeccCC
Q 015870 89 PLNGKPIRVMYSHRD 103 (399)
Q Consensus 89 ~~~g~~i~v~~~~~~ 103 (399)
.|.|+.|.+.+++..
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999988643
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.49 E-value=8.7e-14 Score=102.37 Aligned_cols=82 Identities=16% Similarity=0.233 Sum_probs=71.9
Q ss_pred CCccEEEEcCCC--CCC---CHHHHHHHHhccCCeEEEEEeeeCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 21 FGTTSLYVGDLE--ANV---TDSQLYDLFNQMGQVVSVRVCRDLS----TRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 21 ~~~~~l~v~nLP--~~~---~~~~l~~~f~~~g~v~~i~~~~~~~----~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
+++++|+|+|+- .++ -++||++.|++||.|.++.|+.+.. ++.++|+|||+|.+.++|.+|+..||+..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 379999999994 223 3588999999999999999998864 3567899999999999999999999999999
Q ss_pred CcccEEeeccC
Q 015870 92 GKPIRVMYSHR 102 (399)
Q Consensus 92 g~~i~v~~~~~ 102 (399)
|+.|.+.+++.
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998864
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.2e-13 Score=96.92 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=58.6
Q ss_pred CcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeecHH
Q 015870 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386 (399)
Q Consensus 315 ~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 386 (399)
..+++++|+++|++||.|.+|+++ ++++|||||+|.+.++|..|++.+++ +.|++|+|+|++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 468999999999999999999987 35789999999999999999988554 6899999999997653
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=4.9e-14 Score=101.71 Aligned_cols=73 Identities=29% Similarity=0.505 Sum_probs=63.8
Q ss_pred EcCCCCCCCHHHHHHHH------------hccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 28 VGDLEANVTDSQLYDLF------------NQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 28 v~nLP~~~~~~~l~~~f------------~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
+.|||+++++++|+++| ++||.|.++.++++. ++.++|+|||+|.+.++|.+|+..||+..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55677777887777666 999999999999875 47889999999999999999999999999999999
Q ss_pred EEeecc
Q 015870 96 RVMYSH 101 (399)
Q Consensus 96 ~v~~~~ 101 (399)
+|.+++
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 998863
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5.7e-12 Score=89.56 Aligned_cols=79 Identities=19% Similarity=0.308 Sum_probs=66.3
Q ss_pred CCCccEEEEcCCC-------CCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 20 QFGTTSLYVGDLE-------ANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 20 ~~~~~~l~v~nLP-------~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
....++|.|.-.+ .++++++|+++|++||.|.+|.++ +.++|||||+|.+.++|.+|+..+ ..+.|
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g 79 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE--VGLVD 79 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC--CBCSS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc--CCCCC
Confidence 4446788888776 458999999999999999999987 356789999999999999999974 44679
Q ss_pred cccEEeeccCCcc
Q 015870 93 KPIRVMYSHRDPS 105 (399)
Q Consensus 93 ~~i~v~~~~~~~~ 105 (399)
++|+|.++...+.
T Consensus 80 ~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 80 NPLKISWLEGQPQ 92 (100)
T ss_dssp SBCEEECSSCCCC
T ss_pred CeEEEEEccCCCC
Confidence 9999999876544
No 370
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=7.9e-13 Score=89.60 Aligned_cols=76 Identities=22% Similarity=0.383 Sum_probs=66.4
Q ss_pred hccCCceEEEecCCC----cCCH----HHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 015870 301 DKFQGANLYIKNLDD----SIDD----EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (399)
Q Consensus 301 ~~~~~~~l~v~nl~~----~~~~----~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 372 (399)
.+|+..||+|...+. ++-. .+|.+.|++||.|..+++..+ .+||+|.+.++|.+|+. |||..++
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeC
Confidence 367888999988872 3333 689999999999999999887 39999999999999997 9999999
Q ss_pred CeeEEEEEeeec
Q 015870 373 SKPLYVALAQRK 384 (399)
Q Consensus 373 g~~l~v~~a~~~ 384 (399)
||.|+|++++++
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999999875
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.39 E-value=6.3e-13 Score=115.98 Aligned_cols=76 Identities=22% Similarity=0.459 Sum_probs=67.3
Q ss_pred ccCCceEEEec--CCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCcee---cCe--
Q 015870 302 KFQGANLYIKN--LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV---VSK-- 374 (399)
Q Consensus 302 ~~~~~~l~v~n--l~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~-- 374 (399)
..++.+|||+| |++.+++++|+++|++||.|.+|.+.+ ++|||||+|.+.++|.+|++.|||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 46788999999 578999999999999999999998765 379999999999999999999999988 355
Q ss_pred eEEEEEee
Q 015870 375 PLYVALAQ 382 (399)
Q Consensus 375 ~l~v~~a~ 382 (399)
.|.|.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 68888874
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.29 E-value=1.1e-11 Score=90.46 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=67.4
Q ss_pred CCCccEEEEcCCCCCCC----------HHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC
Q 015870 20 QFGTTSLYVGDLEANVT----------DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~----------~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~ 89 (399)
+.++++|.|.|+=..-. ++||++.|++||.|.++.+.++. .+|+|||+|.+.++|.+|+..|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 46789999999855432 25689999999999999987652 47899999999999999999999999
Q ss_pred CCCcccEEeeccC
Q 015870 90 LNGKPIRVMYSHR 102 (399)
Q Consensus 90 ~~g~~i~v~~~~~ 102 (399)
|.|+.|.+.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999998753
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2.1e-11 Score=88.72 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=73.1
Q ss_pred ccCCceEEEecCCCc-CCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCC-HHHHHHHHHHhc--CceecCeeEE
Q 015870 302 KFQGANLYIKNLDDS-IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST-PEEASRALLEMN--GKMVVSKPLY 377 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~-~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~--~~~~~g~~l~ 377 (399)
.++++.|+|+||++. ++.++|+++|++||.|.+|.+..++. .|||.|.+ .++|..|+..++ +..|+|..++
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 467889999999999 99999999999999999999988743 69999999 899999999994 7889999999
Q ss_pred EEEeeecHHHH
Q 015870 378 VALAQRKEDRR 388 (399)
Q Consensus 378 v~~a~~~~~~~ 388 (399)
+++..-..++.
T Consensus 90 ~evL~GeeE~~ 100 (121)
T 1owx_A 90 WEVLEGEVEKE 100 (121)
T ss_dssp EEECCHHHHHH
T ss_pred EEECCCHHHHH
Confidence 99887666655
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=1.5e-11 Score=107.30 Aligned_cols=79 Identities=22% Similarity=0.358 Sum_probs=66.1
Q ss_pred CCCCCCccEEEEcC--CCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC---C
Q 015870 17 NANQFGTTSLYVGD--LEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL---N 91 (399)
Q Consensus 17 ~~~~~~~~~l~v~n--LP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~---~ 91 (399)
.....++++|||+| |+.++|+++|+++|++||.|.+|.+.. .+|||||+|.+.++|++|++.|||..+ .
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 44578899999999 588999999999999999999887753 357999999999999999999999866 2
Q ss_pred Cc--ccEEeecc
Q 015870 92 GK--PIRVMYSH 101 (399)
Q Consensus 92 g~--~i~v~~~~ 101 (399)
|+ ++.+.+..
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 44 56666653
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=2.5e-11 Score=82.57 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=65.9
Q ss_pred hhccCCceEEEecCCCc-----CCH----HHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 015870 300 ADKFQGANLYIKNLDDS-----IDD----EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370 (399)
Q Consensus 300 ~~~~~~~~l~v~nl~~~-----~~~----~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 370 (399)
..+||..||+|..++.. +-. .+|.+.|++||.|..+++..+ -+||+|.+.++|.+|+. |||..
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCee
Confidence 45788899999988743 323 578999999999999999888 39999999999999997 99999
Q ss_pred ecCeeEEEEEeee
Q 015870 371 VVSKPLYVALAQR 383 (399)
Q Consensus 371 ~~g~~l~v~~a~~ 383 (399)
++||.|+|++..+
T Consensus 82 v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 82 VKGRAVKISGPSS 94 (95)
T ss_dssp ETTEEEEEECCCC
T ss_pred eCCeEEEEeccCC
Confidence 9999999998754
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=2.1e-10 Score=83.46 Aligned_cols=78 Identities=18% Similarity=0.116 Sum_probs=68.3
Q ss_pred CCCCCccEEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CCCCCCc
Q 015870 18 ANQFGTTSLYVGDLEAN-VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN-AQEAARALEMLN--FTPLNGK 93 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~-~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~-~~~A~~a~~~l~--~~~~~g~ 93 (399)
-.-+.++.|+|+|||++ ++.++|+++|++||+|..|.+..+.. .|||.|.+ ..+|..|+..++ +..|.|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 44678899999999999 99999999999999999999987754 69999999 899999999985 5678888
Q ss_pred ccEEeecc
Q 015870 94 PIRVMYSH 101 (399)
Q Consensus 94 ~i~v~~~~ 101 (399)
.+++....
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 88886553
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=2.7e-10 Score=77.21 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=63.6
Q ss_pred CCCccEEEEcCCCC----CCCH----HHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 015870 20 QFGTTSLYVGDLEA----NVTD----SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (399)
Q Consensus 20 ~~~~~~l~v~nLP~----~~~~----~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 91 (399)
.++..||+|.-.|. +.-. .+|.+.|.+||.|..++++.+ .+||+|.+.++|.+|++ |++..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeC
Confidence 35667889988873 3333 568999999999999999987 48999999999999999 9999999
Q ss_pred CcccEEeeccCC
Q 015870 92 GKPIRVMYSHRD 103 (399)
Q Consensus 92 g~~i~v~~~~~~ 103 (399)
|+.|+|..+.++
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999987643
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.00 E-value=5.4e-10 Score=93.09 Aligned_cols=68 Identities=15% Similarity=0.273 Sum_probs=61.0
Q ss_pred CCHHHHHHhhcCcCCceEEEEeeCC-----CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeec
Q 015870 317 IDDEKLKQLFSPFGSITSCKVMRDP-----SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (399)
Q Consensus 317 ~~~~dl~~~f~~~G~v~~v~~~~~~-----~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 384 (399)
-.++||++.|++||.|.++.++++. .+.++|++||+|.+.++|.+|+..|||++++||.|++.|+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 3557999999999999999997654 3488999999999999999999999999999999999998743
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.96 E-value=4.9e-09 Score=72.60 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=74.2
Q ss_pred ccCCceEEEecCCCcCCHHHHHHhhcCc-----CCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeE
Q 015870 302 KFQGANLYIKNLDDSIDDEKLKQLFSPF-----GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376 (399)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~dl~~~f~~~-----G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l 376 (399)
....++|-+-|||..+++..|+.+.++| |.+..+.+.++ .+-|+|+|.+...|-+|...|+|..|+||+|
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 3457899999999999999999999999 99999999888 4569999999999999999999999999999
Q ss_pred EEEEeeecHHHHHHh
Q 015870 377 YVALAQRKEDRRARL 391 (399)
Q Consensus 377 ~v~~a~~~~~~~~~~ 391 (399)
++---++-..++..+
T Consensus 93 r~gTv~eL~~~~~~~ 107 (117)
T 2l9w_A 93 RSGTINDMKRYYNNQ 107 (117)
T ss_dssp EEECHHHHHHHHHHH
T ss_pred EecCHHHHHhccccc
Confidence 998766555444433
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2.4e-09 Score=72.86 Aligned_cols=75 Identities=15% Similarity=0.225 Sum_probs=63.6
Q ss_pred CCCCCccEEEEcCCCCC-----CCH----HHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 015870 18 ANQFGTTSLYVGDLEAN-----VTD----SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT 88 (399)
Q Consensus 18 ~~~~~~~~l~v~nLP~~-----~~~----~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~ 88 (399)
.--++-.||+|.-+++. +-. .+|.+.|.+||.|..+++..+ -+||+|.+.++|.+|++ |++.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCe
Confidence 34567789999999853 222 558899999999999999987 49999999999999999 9999
Q ss_pred CCCCcccEEeecc
Q 015870 89 PLNGKPIRVMYSH 101 (399)
Q Consensus 89 ~~~g~~i~v~~~~ 101 (399)
.+.|+.|+|....
T Consensus 81 ~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 81 KVKGRAVKISGPS 93 (95)
T ss_dssp EETTEEEEEECCC
T ss_pred eeCCeEEEEeccC
Confidence 9999999998653
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.73 E-value=3.6e-08 Score=82.00 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=66.8
Q ss_pred CccEEEEcCCCCC-----CCHHHHHHHHhccCCeEEEEEeeeCCC----CCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 22 GTTSLYVGDLEAN-----VTDSQLYDLFNQMGQVVSVRVCRDLST----RRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 22 ~~~~l~v~nLP~~-----~~~~~l~~~f~~~g~v~~i~~~~~~~~----~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
.+..+.+.|+-.. -.+++|++.|++||.|.++.++.+..+ +.++|++||+|.+.++|.+|+..|+|..+.|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 4455555554332 244679999999999999999866544 3789999999999999999999999999999
Q ss_pred cccEEeeccCC
Q 015870 93 KPIRVMYSHRD 103 (399)
Q Consensus 93 ~~i~v~~~~~~ 103 (399)
|.|.+.+++..
T Consensus 203 r~i~~~~~~~~ 213 (222)
T 3dxb_A 203 RKVVAEVYDQE 213 (222)
T ss_dssp SBCEEEECCHH
T ss_pred eEEEEEEcCHH
Confidence 99999998643
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=2.9e-07 Score=63.43 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=73.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhc---c--CCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQ---M--GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~---~--g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
--..+|.|.|||+.+.++.|.-+|+. - |+|.++.... +.|+|+|.+.+.|++.++. ..+.+.+.++
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 35689999999999999999999987 2 5999888754 2799999999999999984 4678999999
Q ss_pred EEeeccCCcccccCCCceEEEcCCCcccC
Q 015870 96 RVMYSHRDPSLRKSGAGNIFIKNLDKAID 124 (399)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~l~v~nlp~~~t 124 (399)
.|...... ...+|++.+|++.++
T Consensus 77 sV~P~~~~------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPR------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCC------CCCCCCCCSCCCCCC
T ss_pred EEEcCCCC------CcceEeeecCCCCCC
Confidence 99875433 345699999998875
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.48 E-value=4.8e-07 Score=62.75 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=66.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhcc-----CCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCccc
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQM-----GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~-----g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i 95 (399)
...++|-|-|||..++..-|+.++.++ |.+..|.+..+.. -|+|+|.+..+|-+|...|+|..|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 457899999999999999999999999 9999999987753 69999999999999999999999999999
Q ss_pred EEe
Q 015870 96 RVM 98 (399)
Q Consensus 96 ~v~ 98 (399)
++.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 985
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.18 E-value=5.7e-06 Score=57.38 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=64.2
Q ss_pred CCceEEEecCCCcC-C---H-HHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 015870 304 QGANLYIKNLDDSI-D---D-EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (399)
Q Consensus 304 ~~~~l~v~nl~~~~-~---~-~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 378 (399)
..++|+|.||+..+ . . +.++++|..|+.+......+.- .-..|.|.+.++|.+|...||+..+.|+.|+|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 35689999998765 2 2 5789999999988887777662 24899999999999999999999999999999
Q ss_pred EEeeec
Q 015870 379 ALAQRK 384 (399)
Q Consensus 379 ~~a~~~ 384 (399)
=|+.+-
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998754
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.12 E-value=4.6e-06 Score=57.85 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=63.8
Q ss_pred ccEEEEcCCCCCC-CH----HHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEE
Q 015870 23 TTSLYVGDLEANV-TD----SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (399)
Q Consensus 23 ~~~l~v~nLP~~~-~~----~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (399)
.++|+|.|||.++ +. +.++++|..|+++......+.-+ -..|.|.++++|.+|...||+..|.|+++++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999999976 33 35788999999988888876543 6899999999999999999999999999999
Q ss_pred eeccC
Q 015870 98 MYSHR 102 (399)
Q Consensus 98 ~~~~~ 102 (399)
.++..
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99863
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.90 E-value=4.8e-05 Score=51.98 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=55.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCC--cccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR--SLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~--~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
+.|.||+||+.+|++++.+.+.....+.....+.++.+.. ...-|||.|.+.+++......++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5799999999999999999999887765555555443322 23479999999999999999999987654
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.80 E-value=8.5e-05 Score=50.54 Aligned_cols=57 Identities=28% Similarity=0.410 Sum_probs=46.7
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 367 (399)
....|+.-++|+.+.-.||..+|++||.| .|+++.+ -.|||.|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 34445444999999999999999999955 5677776 279999999999999998763
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.79 E-value=0.00016 Score=49.24 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=49.4
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015870 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (399)
Q Consensus 16 ~~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l 85 (399)
....+--.+.++| +.|+.+...||.++|+.||.| .|.=+.|- .|||.|.+++.|..|+..+
T Consensus 9 ~d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 9 PDLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SCCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3444555566777 999999999999999999854 46556552 7999999999999999976
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=0.00012 Score=50.60 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=62.8
Q ss_pred CCceEEEecCCCcCCHHHHHHhhcC---c--CCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEE
Q 015870 304 QGANLYIKNLDDSIDDEKLKQLFSP---F--GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (399)
Q Consensus 304 ~~~~l~v~nl~~~~~~~dl~~~f~~---~--G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 378 (399)
...+|.|.|||..++++.|.-+|++ - |.|.+++... +-|+|+|.+.+.|.+.++ -....|+|..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLA-QADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhc-CCcceecCeEEEE
Confidence 4578999999999999999999976 2 4788887655 369999999999999984 3477888899999
Q ss_pred EEeeecHHHH
Q 015870 379 ALAQRKEDRR 388 (399)
Q Consensus 379 ~~a~~~~~~~ 388 (399)
.-.-+++..|
T Consensus 79 ~P~~~~~~~r 88 (104)
T 2dhx_A 79 RPAPPRAPAR 88 (104)
T ss_dssp EECCCCCCCC
T ss_pred EcCCCCCcce
Confidence 7776666544
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.75 E-value=0.00011 Score=52.68 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=59.2
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC-ccc
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG-KPI 95 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g-~~i 95 (399)
.......+-|.|.|.|+.. -..|..+|++||.|++.... .+ .++..|.|.+..+|++|+.. |+..+.| -.|
T Consensus 18 ~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~--~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mI 89 (119)
T 1wwh_A 18 SEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NT--GNWMHIRYQSKLQARKALSK-DGRIFGESIMI 89 (119)
T ss_dssp ---CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SS--SSEEEEEESSHHHHHHHHTT-TTCEETTTEEC
T ss_pred CCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CC--CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEE
Confidence 4456678999999999984 67789999999999988762 12 24999999999999999995 9998875 445
Q ss_pred EEeec
Q 015870 96 RVMYS 100 (399)
Q Consensus 96 ~v~~~ 100 (399)
-|.+.
T Consensus 90 GV~p~ 94 (119)
T 1wwh_A 90 GVKPC 94 (119)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 55553
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.58 E-value=0.00053 Score=46.82 Aligned_cols=67 Identities=12% Similarity=0.246 Sum_probs=56.5
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC---CCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP---SGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 372 (399)
.+|.|++||+..|++++.+.+.....+....+.... ......-|.|.|.+.+++..-.+.++|..|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 579999999999999999999999888777776654 1223356999999999999999999999883
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=0.00073 Score=48.34 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=56.8
Q ss_pred cCCceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecC-eeEEEEE
Q 015870 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS-KPLYVAL 380 (399)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g-~~l~v~~ 380 (399)
...+-|.|-+.|... ...|.+.|++||.|.+...... ..+..|.|.+..+|.+|| ..||..++| --|=|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~-----~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT-----GNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS-----SSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC-----CCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEE
Confidence 345779999999885 6778899999999998876322 459999999999999999 569999975 4455544
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.30 E-value=0.00041 Score=47.40 Aligned_cols=53 Identities=32% Similarity=0.461 Sum_probs=45.4
Q ss_pred eEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 015870 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (399)
Q Consensus 307 ~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 367 (399)
.++| ++|+.+.-.||..+|++||.| .|+++.+ ..|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 3455 999999999999999999944 6777776 279999999999999999774
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.23 E-value=0.00044 Score=47.23 Aligned_cols=54 Identities=22% Similarity=0.387 Sum_probs=45.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 015870 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (399)
Q Consensus 24 ~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~ 86 (399)
+.++| +.|+.+...||.++|+.||. ..|.=+.|- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34555 99999999999999999994 456666652 79999999999999999764
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.06 E-value=0.00048 Score=47.24 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=50.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCC-CC-cccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-RR-SLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~-~~-~~g~a~V~f~~~~~A~~a~~~l~~~~~~g 92 (399)
...+-.|.||.||+.+|++++.+.+..+=.+.....+.++.+ +. ...-|||.|.+.++........+|..|.+
T Consensus 6 ~~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 6 HHHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 345778999999999999998777765423211111111111 11 12369999999999999999999887643
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.94 E-value=0.004 Score=42.73 Aligned_cols=77 Identities=14% Similarity=0.257 Sum_probs=55.1
Q ss_pred CceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCC--C-CCcccEEEEEeCCHHHHHHHHHHhcCceec---Ce--eE
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP--S-GISRGSGFVAFSTPEEASRALLEMNGKMVV---SK--PL 376 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~--~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~---g~--~l 376 (399)
+-+|.|+.||+..|++++.+.+...-.+....+.... . .....-|.|.|.+.++...-.+.++|..|- |. +-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4679999999999999999888776444333333322 1 112235999999999999999999999883 22 44
Q ss_pred EEEEe
Q 015870 377 YVALA 381 (399)
Q Consensus 377 ~v~~a 381 (399)
.|+||
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 45555
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.87 E-value=0.00068 Score=49.15 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=55.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEE-EEee------------eCCCC-CcccEEEEEeCCHHHHHHHHHHhC
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV-RVCR------------DLSTR-RSLGYGYVNFSNAQEAARALEMLN 86 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i-~~~~------------~~~~~-~~~g~a~V~f~~~~~A~~a~~~l~ 86 (399)
.....|.|-|.|+.. ...|.++|++||.|.+- ...+ .+... ...++..|.|.+..+|++|+.. |
T Consensus 5 ~~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-N 82 (132)
T ss_dssp ---CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-T
T ss_pred cCceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-C
Confidence 355678899998855 45678899999988662 1111 00000 1245999999999999999985 9
Q ss_pred CCCCCCcccEEeecc
Q 015870 87 FTPLNGKPIRVMYSH 101 (399)
Q Consensus 87 ~~~~~g~~i~v~~~~ 101 (399)
+..|.|..|-|.+.+
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999877777654
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.62 E-value=0.00096 Score=60.43 Aligned_cols=58 Identities=9% Similarity=0.208 Sum_probs=44.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 015870 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84 (399)
Q Consensus 21 ~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~ 84 (399)
...++|+|. .|..+++.+|.++|++||+|.++....++ | -||.|+|.+.+++..++..
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 456899998 79999999999999999999999887653 3 4999999999999987764
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.23 E-value=0.0096 Score=43.21 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=54.2
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcCCceE-EEEeeCC-------------CC-CcccEEEEEeCCHHHHHHHHHHhcCce
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITS-CKVMRDP-------------SG-ISRGSGFVAFSTPEEASRALLEMNGKM 370 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G~v~~-v~~~~~~-------------~~-~~~g~afV~f~~~~~A~~A~~~l~~~~ 370 (399)
.-|.|-+.|..... .+.+.|++||.|.. +...+.. .. ...++..|+|++..+|.+|| ..||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 45778888766554 47799999999865 2211100 00 12468899999999999999 679999
Q ss_pred ecCeeEEEEEee
Q 015870 371 VVSKPLYVALAQ 382 (399)
Q Consensus 371 ~~g~~l~v~~a~ 382 (399)
|+|.-|=|...+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999877777764
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.92 E-value=0.0051 Score=55.75 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=41.7
Q ss_pred CceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 015870 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364 (399)
Q Consensus 305 ~~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 364 (399)
.++|+|. .|...++++|.++|++||.|.++.+..+. ..||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 3789997 79999999999999999999999887642 2599999999999987764
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.73 E-value=1 Score=41.74 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=46.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 015870 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (399)
Q Consensus 22 ~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~ 86 (399)
....++|+ +|..+...+|.+.|+.||. .+|.-+.+. .|||.|.+.++|..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 34577776 9999999999999999995 456555442 79999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.07 E-value=1.3 Score=40.93 Aligned_cols=53 Identities=30% Similarity=0.432 Sum_probs=44.1
Q ss_pred EEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 015870 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (399)
Q Consensus 308 l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 367 (399)
+++-.+|..+...||.+.|+.||.| +|+++.+ ..|+|.|.+.+.|..+++.++
T Consensus 442 vl~v~f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEECCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 4444599999999999999999954 6766665 369999999999999999885
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=81.59 E-value=1.9 Score=27.98 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=40.7
Q ss_pred cCCHHHHHHhhcCcCC-----ceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEee
Q 015870 316 SIDDEKLKQLFSPFGS-----ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (399)
Q Consensus 316 ~~~~~dl~~~f~~~G~-----v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 382 (399)
.+...+|..++..-+. |-.+++... |.||+... +.|..++..|++..+.|+.+.++.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4666788888875543 445665444 89999888 66778999999999999999998775
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=68.07 E-value=23 Score=23.31 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=46.3
Q ss_pred CceEEEcCCCcccCHHHHHHHhcccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhcC
Q 015870 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174 (399)
Q Consensus 111 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~v~f~~~~~a~~a~~~l~~ 174 (399)
.+-+.+-|+|..+-..++.-.....|--..|..+ .|.|.+.|.+.++-+.|+++|-+
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHHh
Confidence 3557789999999999988888887766666665 44699999999999999998843
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=59.37 E-value=25 Score=26.83 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=35.5
Q ss_pred ceEEEecCCC-c--------CCHHHHHHhh--cCcCCceEEEEeeCCCCCcccEEEEEeCCH
Q 015870 306 ANLYIKNLDD-S--------IDDEKLKQLF--SPFGSITSCKVMRDPSGISRGSGFVAFSTP 356 (399)
Q Consensus 306 ~~l~v~nl~~-~--------~~~~dl~~~f--~~~G~v~~v~~~~~~~~~~~g~afV~f~~~ 356 (399)
..++|.|+|. . .+..+|++.| +.|.++. ++.+-.+.| ++|+|.|.|.+-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCC
Confidence 4677889987 2 3447899977 9997664 555555444 688999999963
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=57.84 E-value=34 Score=21.78 Aligned_cols=57 Identities=14% Similarity=0.336 Sum_probs=37.8
Q ss_pred CCHHHHHHHHhccC-----CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEeec
Q 015870 35 VTDSQLYDLFNQMG-----QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (399)
Q Consensus 35 ~~~~~l~~~f~~~g-----~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (399)
+...+|..++..-+ .|-.|.+... +.||+-.... |..++..|+...+.|+.+.+..+
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEEC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEEC
Confidence 66677777776443 4666777544 7888876654 77788888988899999988765
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=48.58 E-value=55 Score=21.51 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=51.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcccEEee
Q 015870 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (399)
Q Consensus 20 ~~~~~~l~v~nLP~~~~~~~l~~~f~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (399)
-...+.|.|-|+|..+-..++.-...-.|--..+..+. |.|.+.|.+.++-..|+..|-+. .++.+.++.
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 45678999999999999999887777777434444432 37999999999999999876322 445555543
No 408
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.18 E-value=55 Score=21.70 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=36.9
Q ss_pred cCCCcCCHHHHHHhhcC-cC-CceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 015870 312 NLDDSIDDEKLKQLFSP-FG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364 (399)
Q Consensus 312 nl~~~~~~~dl~~~f~~-~G-~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 364 (399)
.....++..+|+..++. |+ .|.+|..+..+.|.- -|+|++..-.+|.....
T Consensus 29 ~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~K--KA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 29 IVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEK--KAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCE--EEEEEECTTSCHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCce--EEEEEcCCCCcHHHHHH
Confidence 36778999999999876 55 577787666554432 49999998777766543
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=33.41 E-value=94 Score=23.70 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=34.1
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHH--hccCCeEEEEEeeeCCCCCcccEEEEEeCCH
Q 015870 25 SLYVGDLEA-N--------VTDSQLYDLF--NQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75 (399)
Q Consensus 25 ~l~v~nLP~-~--------~~~~~l~~~f--~~~g~v~~i~~~~~~~~~~~~g~a~V~f~~~ 75 (399)
.+.|-|+|. . ....+|++.| +.|.++. +..+.+. ...+|+|.|.|.+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCC
Confidence 467888887 2 2346899977 8998865 5555442 34678999999986
No 410
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=31.20 E-value=1.3e+02 Score=20.83 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHhc-cC----CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHH
Q 015870 34 NVTDSQLYDLFNQ-MG----QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81 (399)
Q Consensus 34 ~~~~~~l~~~f~~-~g----~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a 81 (399)
..+..+|++.+.. |+ .|.=-.+......|.++|+|.| |.+.+.|++.
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 3567788877654 33 2222233334445778899987 7888888754
No 411
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=30.97 E-value=1.3e+02 Score=20.65 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHhcc-C----CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHH
Q 015870 33 ANVTDSQLYDLFNQM-G----QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80 (399)
Q Consensus 33 ~~~~~~~l~~~f~~~-g----~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~ 80 (399)
...+..+|++.+.+. + .|.=-.+......|+++|+|.| |.+.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 345778888877643 3 2332333444456778899987 788888765
No 412
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=30.29 E-value=59 Score=21.59 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=19.9
Q ss_pred CceEEEEeeCC-CCCcccEEEEEeCC
Q 015870 331 SITSCKVMRDP-SGISRGSGFVAFST 355 (399)
Q Consensus 331 ~v~~v~~~~~~-~~~~~g~afV~f~~ 355 (399)
.|.++++.+-. .|+.+++|-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788876654 68889999999986
No 413
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=29.26 E-value=1.4e+02 Score=20.46 Aligned_cols=50 Identities=12% Similarity=0.284 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHhc-cC----CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 015870 33 ANVTDSQLYDLFNQ-MG----QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83 (399)
Q Consensus 33 ~~~~~~~l~~~f~~-~g----~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~ 83 (399)
...+..+|++.+.. |+ .|.=-.+......|.++|+|.| |.+.+.|++.=-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~Ep 82 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVEQ 82 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhCc
Confidence 44677888887764 33 2222333444445778888877 788887776543
No 414
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=28.78 E-value=47 Score=31.86 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=40.4
Q ss_pred CCCcCCHHHHHHhhc----CcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015870 313 LDDSIDDEKLKQLFS----PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366 (399)
Q Consensus 313 l~~~~~~~dl~~~f~----~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 366 (399)
.+.+.+--||..+|- .+|.|..+.+...+....+.++++.|.+.++|..++..+
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 344445558888883 678899887765554555678999999999999988766
No 415
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=27.28 E-value=69 Score=21.91 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=19.9
Q ss_pred CceEEEEeeCC-CCCcccEEEEEeCC
Q 015870 331 SITSCKVMRDP-SGISRGSGFVAFST 355 (399)
Q Consensus 331 ~v~~v~~~~~~-~~~~~g~afV~f~~ 355 (399)
.|.+|++.+-. .|+.+++|-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788876654 68899999999986
No 416
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=26.61 E-value=1.1e+02 Score=18.62 Aligned_cols=55 Identities=11% Similarity=-0.040 Sum_probs=41.3
Q ss_pred ceEEEecCCCcCCHHHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015870 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366 (399)
Q Consensus 306 ~~l~v~nl~~~~~~~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 366 (399)
.++.|.++.-.-....|...+.. ..|..+.+... .+.+.|+|.+.++...++..+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHHc
Confidence 46788888877777889999988 78888876443 457889988666666676543
No 417
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=25.84 E-value=77 Score=21.89 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=19.7
Q ss_pred CceEEEEeeCC-CCCcccEEEEEeCC
Q 015870 331 SITSCKVMRDP-SGISRGSGFVAFST 355 (399)
Q Consensus 331 ~v~~v~~~~~~-~~~~~g~afV~f~~ 355 (399)
.|.+|++.+-. .|+.+++|-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46778776654 68899999999986
No 418
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=25.39 E-value=38 Score=24.46 Aligned_cols=61 Identities=7% Similarity=0.112 Sum_probs=35.8
Q ss_pred HHHHHhhcCcCCceEEEEeeCCCCCcccEEEEEeC--CHHHHHHHHHHhcCcee--cCeeEEEEEee
Q 015870 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS--TPEEASRALLEMNGKMV--VSKPLYVALAQ 382 (399)
Q Consensus 320 ~dl~~~f~~~G~v~~v~~~~~~~~~~~g~afV~f~--~~~~A~~A~~~l~~~~~--~g~~l~v~~a~ 382 (399)
.+|+++|...+....+.++.+++= +|-.-+.+. +.++|..++...+|..+ .|..|+|.-+.
T Consensus 41 a~i~~vl~~la~~tg~NiV~d~~V--~G~VTl~l~~v~~~~al~~iL~~~gl~~~~~gnvi~I~p~~ 105 (128)
T 4ar0_A 41 VEIRTILQILAKESGMNIVASDSV--NGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRD 105 (128)
T ss_dssp EEHHHHHHHHHHTTCCEEEECTTC--CCEEEEEEEEEEHHHHHHHHHHHHTEEEEEETTEEEEEEHH
T ss_pred CCHHHHHHHHHHHHCCcEEEcCCC--CceeeEeecCCCHHHHHHHHHHHcCceEEEECCEEEEEChH
Confidence 345555554444444444444322 233334433 56789988888888755 68888887544
No 419
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=25.00 E-value=61 Score=21.28 Aligned_cols=31 Identities=6% Similarity=0.170 Sum_probs=25.3
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHhcc
Q 015870 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQM 47 (399)
Q Consensus 17 ~~~~~~~~~l~v~nLP~~~~~~~l~~~f~~~ 47 (399)
+..-.....|.+.+.|.+++.++..+++..|
T Consensus 13 ~s~lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 13 ATTLNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp ---CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred ccccCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 4456677899999999999999999999887
No 420
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=24.73 E-value=45 Score=30.90 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=30.4
Q ss_pred HHHHhh--cCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q 015870 321 KLKQLF--SPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363 (399)
Q Consensus 321 dl~~~f--~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~ 363 (399)
||..+| +.+|.|..+.+...+.......+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 456777 4689999987766554444556889999987765543
No 421
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.10 E-value=35 Score=23.23 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=18.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhcc
Q 015870 26 LYVGDLEANVTDSQLYDLFNQM 47 (399)
Q Consensus 26 l~v~nLP~~~~~~~l~~~f~~~ 47 (399)
--|-+|+.+++.++|+..|.+.
T Consensus 20 Y~vLgv~~~as~~eIk~ayr~l 41 (99)
T 2yua_A 20 YDLLGVPSTATQAQIKAAYYRQ 41 (99)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHH
Confidence 4477999999999999998765
No 422
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=22.88 E-value=1.5e+02 Score=20.23 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=47.6
Q ss_pred EecCCCcCCHHHHHHhh-cCcCCceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeEEEEEeeec
Q 015870 310 IKNLDDSIDDEKLKQLF-SPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (399)
Q Consensus 310 v~nl~~~~~~~dl~~~f-~~~G~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 384 (399)
|-.++-.+..+||..-. ..||.-.+++.... .+.|-..+.+|-.+|++.|+.. -.-+.|+|-+..++
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~-------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEECSS-------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEecc-------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 33456678888887766 56888778876633 4889999999999999876543 45556666555544
No 423
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=21.42 E-value=81 Score=26.19 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=23.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeE
Q 015870 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVV 51 (399)
Q Consensus 23 ~~~l~v~nLP~~~~~~~l~~~f~~~g~v~ 51 (399)
..-+.|+|||++++...|..++.. ..+.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~ 137 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFA 137 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCC
Confidence 357899999999999999999977 5443
No 424
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=20.80 E-value=1.6e+02 Score=21.57 Aligned_cols=50 Identities=10% Similarity=0.239 Sum_probs=35.3
Q ss_pred CCCcCCHHHHHHhhcC-cC-CceEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 015870 313 LDDSIDDEKLKQLFSP-FG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364 (399)
Q Consensus 313 l~~~~~~~dl~~~f~~-~G-~v~~v~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 364 (399)
+...++..+|+..++. |+ .|..|..+..++|.- -|+|++..-.+|.....
T Consensus 86 Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K--KAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 86 VSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTK--KAYVRLTADYDALDIAN 137 (142)
T ss_dssp ECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCE--EEEEEECTTCCHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCce--EEEEEeCCCCcHHHHHH
Confidence 5678899999888866 44 577887666655433 49999987777665443
No 425
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=20.32 E-value=2.3e+02 Score=20.92 Aligned_cols=47 Identities=15% Similarity=0.287 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHhc-cC----CeEEEEEeeeCCCCCcccEEEEEeCCHHHHHHH
Q 015870 34 NVTDSQLYDLFNQ-MG----QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81 (399)
Q Consensus 34 ~~~~~~l~~~f~~-~g----~v~~i~~~~~~~~~~~~g~a~V~f~~~~~A~~a 81 (399)
..+..||++.+.. |+ .|.=-.+......|.+.|||.| |.+.+.|.+.
T Consensus 32 TpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 32 TASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp SCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 3567788887765 44 2222233333345678889888 7888887753
Done!