BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015871
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Pmp Form
Length = 422
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 249 IEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKE 306
+ +WM + + + I SL ER T+ GK F A K+ VLGPD +K
Sbjct: 215 VYQWMVYDGHQHISIASLPGMWERTLTIGS----AGKTFSATGWKVGWVLGPDHIMKH 268
>pdb|2PTR|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
pdb|2PTR|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
Length = 462
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 19 LQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCS 78
+Q+E R + ++E + + D I L+ S SE ED I+ +ER +
Sbjct: 37 VQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSE---EDAARIKTIERTTNHDV 93
Query: 79 QEIDYLQDQLNARNEEVYSLSEHVH 103
+ ++Y + A E++++SE +H
Sbjct: 94 KAVEYFLKEKVAEIPELHAVSEFIH 118
>pdb|2PTQ|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
pdb|2PTQ|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
Length = 462
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 19 LQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCS 78
+Q+E R + ++E + + D I L+ S SE ED I+ +ER +
Sbjct: 37 VQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSE---EDAARIKTIERTTNHDV 93
Query: 79 QEIDYLQDQLNARNEEVYSLSEHVH 103
+ ++Y + A E++++SE +H
Sbjct: 94 KAVEYFLKEKVAEIPELHAVSEFIH 118
>pdb|2PTS|A Chain A, Crystal Structure Of Wild Type Escherichia Coli
Adenylosuccinate Lyase
Length = 462
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 19 LQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCS 78
+Q+E R + ++E + + D I L+ S SE ED I+ +ER +
Sbjct: 37 VQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSE---EDAARIKTIERTTNHDV 93
Query: 79 QEIDYLQDQLNARNEEVYSLSEHVH 103
+ ++Y + A E++++SE +H
Sbjct: 94 KAVEYFLKEKVAEIPELHAVSEFIH 118
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate
Lyase From E. Coli
Length = 482
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 19 LQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCS 78
+Q+E R + ++E + + D I L+ + SE ED I+ +ER +
Sbjct: 63 VQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVANFSE---EDAARIKTIERTTNHDV 119
Query: 79 QEIDYLQDQLNARNEEVYSLSEHVH 103
+ ++Y + A E++++SE +H
Sbjct: 120 KAVEYFLKEKVAEIPELHAVSEFIH 144
>pdb|1HIZ|A Chain A, Xylanase T6 (Xt6) From Bacillus Stearothermophilus
pdb|1R85|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6): The Wt Enzyme
(Monoclinic Form) At 1.45a Resolution
pdb|1R87|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
Form): The Complex Of The Wt Enzyme With Xylopentaose At
1.67a Resolution
Length = 379
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 15 VEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKH 66
V + ++ + + E D ++ Q++ L+KRLE H K++ E + +D K+
Sbjct: 103 VPQWFFLDKEGKPMVNETDPVKREQNKQL-LLKRLETHIKTIVERYKDDIKY 153
>pdb|1R86|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
Form): The E159aE265A MUTANT AT 1.8A RESOLUTION
Length = 379
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 15 VEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKH 66
V + ++ + + E D ++ Q++ L+KRLE H K++ E + +D K+
Sbjct: 103 VPQWFFLDKEGKPMVNETDPVKREQNKQL-LLKRLETHIKTIVERYKDDIKY 153
>pdb|3MMD|A Chain A, Crystal Structure Of The W241a Mutant Of Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6) Complexed With
Hydrolyzed Xylopentaose
Length = 379
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 15 VEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKH 66
V + ++ + + E D ++ Q++ L+KRLE H K++ E + +D K+
Sbjct: 103 VPQWFFLDKEGKPMVNETDPVKREQNKQL-LLKRLETHIKTIVERYKDDIKY 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,764,941
Number of Sequences: 62578
Number of extensions: 285570
Number of successful extensions: 818
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 760
Number of HSP's gapped (non-prelim): 87
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)