Query 015871
Match_columns 399
No_of_seqs 14 out of 16
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 01:40:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02169 SMC_prok_A chromosom 97.9 0.04 8.6E-07 57.8 34.6 96 15-110 673-768 (1164)
2 TIGR02168 SMC_prok_B chromosom 97.1 0.53 1.2E-05 49.2 29.3 19 303-321 969-987 (1179)
3 COG1196 Smc Chromosome segrega 96.5 2 4.4E-05 47.8 29.2 167 67-237 732-909 (1163)
4 TIGR02169 SMC_prok_A chromosom 96.4 1.7 3.6E-05 46.0 33.0 42 315-357 978-1019(1164)
5 PRK02224 chromosome segregatio 96.4 1.7 3.7E-05 45.8 35.1 32 60-91 208-239 (880)
6 COG1196 Smc Chromosome segrega 96.0 3.6 7.7E-05 46.0 33.1 148 70-224 756-910 (1163)
7 TIGR00606 rad50 rad50. This fa 95.5 5.6 0.00012 45.0 27.0 248 65-331 829-1093(1311)
8 TIGR02168 SMC_prok_B chromosom 94.6 7.2 0.00016 41.1 34.6 15 17-31 678-692 (1179)
9 KOG0161 Myosin class II heavy 94.5 15 0.00033 44.4 30.0 198 21-231 1320-1524(1930)
10 PF07888 CALCOCO1: Calcium bin 94.2 9.4 0.0002 40.9 24.8 28 137-164 205-232 (546)
11 PF00261 Tropomyosin: Tropomyo 93.9 5.2 0.00011 37.0 22.7 233 66-350 2-234 (237)
12 PF09730 BicD: Microtubule-ass 93.8 9.5 0.00021 41.9 20.3 143 64-237 33-181 (717)
13 PHA02562 46 endonuclease subun 93.7 8.3 0.00018 38.4 21.8 81 23-106 174-254 (562)
14 KOG0994 Extracellular matrix g 92.9 24 0.00053 41.6 27.2 268 35-357 1424-1708(1758)
15 PRK03918 chromosome segregatio 92.8 15 0.00032 38.8 33.6 38 65-102 200-237 (880)
16 TIGR00606 rad50 rad50. This fa 92.6 22 0.00048 40.4 34.3 36 96-131 785-820 (1311)
17 PRK02224 chromosome segregatio 92.5 17 0.00036 38.7 33.6 32 206-237 524-555 (880)
18 PRK11637 AmiB activator; Provi 92.2 13 0.00028 36.9 21.3 87 167-253 44-130 (428)
19 PF09726 Macoilin: Transmembra 87.8 43 0.00094 36.6 17.9 154 48-236 471-653 (697)
20 PRK09039 hypothetical protein; 85.1 42 0.00091 33.3 16.8 132 83-239 43-178 (343)
21 smart00338 BRLZ basic region l 84.8 3.6 7.7E-05 31.0 5.9 56 44-99 5-60 (65)
22 PHA02562 46 endonuclease subun 84.8 45 0.00098 33.3 20.0 117 55-171 164-288 (562)
23 PF10473 CENP-F_leu_zip: Leuci 83.0 30 0.00064 31.2 11.8 107 113-237 20-126 (140)
24 PF12128 DUF3584: Protein of u 81.2 1.1E+02 0.0023 35.0 30.1 260 65-384 607-872 (1201)
25 KOG0996 Structural maintenance 76.9 1.7E+02 0.0036 34.8 28.4 99 138-236 900-1016(1293)
26 PF10174 Cast: RIM-binding pro 75.3 1.4E+02 0.0031 33.3 28.8 184 44-248 212-400 (775)
27 PF05667 DUF812: Protein of un 74.9 76 0.0016 34.2 13.8 59 306-365 408-466 (594)
28 PF15272 BBP1_C: Spindle pole 74.8 80 0.0017 30.1 15.7 74 306-384 75-149 (196)
29 PF05557 MAD: Mitotic checkpoi 74.1 15 0.00032 39.2 8.4 188 63-252 397-646 (722)
30 PF09728 Taxilin: Myosin-like 73.5 98 0.0021 30.5 19.4 132 96-237 15-146 (309)
31 PF00170 bZIP_1: bZIP transcri 72.5 18 0.00039 27.2 6.4 57 46-102 7-63 (64)
32 PRK01156 chromosome segregatio 70.9 1.6E+02 0.0035 31.9 22.7 59 100-158 180-238 (895)
33 PRK04863 mukB cell division pr 67.3 2.8E+02 0.0061 33.3 30.3 77 303-388 583-666 (1486)
34 PF05701 WEMBL: Weak chloropla 66.7 1.7E+02 0.0037 30.6 34.1 287 73-379 131-440 (522)
35 PF15450 DUF4631: Domain of un 65.7 2.1E+02 0.0045 31.2 21.2 156 79-243 258-445 (531)
36 PF00038 Filament: Intermediat 64.6 1.2E+02 0.0027 28.3 24.0 80 137-227 53-132 (312)
37 PRK11637 AmiB activator; Provi 64.4 1.6E+02 0.0035 29.4 23.6 34 204-237 88-121 (428)
38 KOG4674 Uncharacterized conser 63.9 3.6E+02 0.0078 33.4 27.3 71 170-243 958-1028(1822)
39 smart00742 Hr1 Rho effector or 63.6 11 0.00024 28.2 3.7 34 56-89 23-56 (57)
40 PF00038 Filament: Intermediat 62.9 1.3E+02 0.0029 28.1 29.5 55 306-360 230-284 (312)
41 PF12718 Tropomyosin_1: Tropom 62.4 1.1E+02 0.0024 27.0 10.6 71 62-132 18-95 (143)
42 KOG0250 DNA repair protein RAD 61.3 3.3E+02 0.0072 32.0 21.4 90 54-157 678-767 (1074)
43 KOG0161 Myosin class II heavy 60.4 4.2E+02 0.0091 33.0 34.7 66 45-110 1042-1107(1930)
44 PF13935 Ead_Ea22: Ead/Ea22-li 58.4 44 0.00096 29.1 6.9 6 375-380 134-139 (139)
45 PF02403 Seryl_tRNA_N: Seryl-t 58.2 66 0.0014 26.0 7.5 75 10-84 23-100 (108)
46 PF07888 CALCOCO1: Calcium bin 57.9 2.8E+02 0.0061 30.2 28.4 36 184-219 311-346 (546)
47 KOG0612 Rho-associated, coiled 57.4 4.1E+02 0.0089 31.9 22.1 124 61-218 430-556 (1317)
48 KOG0964 Structural maintenance 56.4 4.1E+02 0.0088 31.5 19.0 201 16-231 190-430 (1200)
49 PF05483 SCP-1: Synaptonemal c 55.3 3.6E+02 0.0079 30.7 27.3 303 28-362 256-596 (786)
50 KOG3313 Molecular chaperone Pr 54.7 15 0.00032 35.0 3.6 41 55-97 125-165 (187)
51 PF09728 Taxilin: Myosin-like 54.2 2.3E+02 0.005 28.0 17.9 60 178-237 37-96 (309)
52 KOG0994 Extracellular matrix g 53.6 5E+02 0.011 31.7 20.7 208 179-388 1407-1633(1758)
53 PF11598 COMP: Cartilage oligo 53.5 56 0.0012 24.8 5.8 35 310-355 5-39 (45)
54 PF02185 HR1: Hr1 repeat; Int 52.9 23 0.0005 27.2 3.9 34 61-94 28-62 (70)
55 KOG4302 Microtubule-associated 51.2 1.7E+02 0.0037 32.4 11.3 76 165-240 189-268 (660)
56 PF06005 DUF904: Protein of un 50.8 95 0.0021 25.1 7.2 34 205-238 4-37 (72)
57 PF05557 MAD: Mitotic checkpoi 48.4 52 0.0011 35.1 6.9 59 61-123 253-311 (722)
58 PF15619 Lebercilin: Ciliary p 47.7 2.4E+02 0.0052 26.3 13.1 122 116-240 67-192 (194)
59 PF07160 DUF1395: Protein of u 46.4 67 0.0015 30.7 6.6 61 299-360 15-75 (243)
60 KOG0239 Kinesin (KAR3 subfamil 46.1 3.9E+02 0.0084 29.5 12.9 75 172-246 243-320 (670)
61 PF10473 CENP-F_leu_zip: Leuci 45.9 1.1E+02 0.0025 27.5 7.6 82 65-163 24-105 (140)
62 PF09763 Sec3_C: Exocyst compl 45.8 4.1E+02 0.0088 28.4 13.3 132 181-321 27-163 (701)
63 COG0419 SbcC ATPase involved i 45.8 4.6E+02 0.0099 29.0 32.4 80 303-386 530-615 (908)
64 COG3883 Uncharacterized protei 44.9 3.3E+02 0.0072 27.2 17.7 73 181-253 35-107 (265)
65 PF09738 DUF2051: Double stran 44.6 3.4E+02 0.0074 27.2 12.7 161 140-337 86-250 (302)
66 KOG0946 ER-Golgi vesicle-tethe 44.6 5.7E+02 0.012 29.8 16.7 113 16-145 653-765 (970)
67 KOG0447 Dynamin-like GTP bindi 43.4 93 0.002 34.9 7.9 64 187-251 215-282 (980)
68 KOG0995 Centromere-associated 43.1 5E+02 0.011 28.7 23.9 100 128-235 286-390 (581)
69 PF09730 BicD: Microtubule-ass 42.9 5.3E+02 0.012 29.0 14.4 41 198-238 279-319 (717)
70 PF12777 MT: Microtubule-bindi 41.0 34 0.00074 33.4 3.9 86 169-254 213-298 (344)
71 PF05377 FlaC_arch: Flagella a 40.9 56 0.0012 25.8 4.3 40 207-246 2-41 (55)
72 PRK09039 hypothetical protein; 40.7 3.8E+02 0.0083 26.7 11.8 105 133-237 41-155 (343)
73 COG4026 Uncharacterized protei 40.0 3.4E+02 0.0074 27.4 10.4 70 186-258 137-206 (290)
74 PF08614 ATG16: Autophagy prot 39.2 2.2E+02 0.0048 25.7 8.5 111 112-237 69-183 (194)
75 COG5185 HEC1 Protein involved 39.0 4E+02 0.0087 29.4 11.5 57 189-249 241-297 (622)
76 PHA03325 nuclear-egress-membra 38.7 16 0.00035 38.1 1.4 73 79-154 153-227 (418)
77 PF08614 ATG16: Autophagy prot 38.7 1E+02 0.0022 27.9 6.2 83 11-93 62-144 (194)
78 TIGR00634 recN DNA repair prot 38.6 4.8E+02 0.01 27.2 19.5 56 307-363 330-385 (563)
79 PF02181 FH2: Formin Homology 37.9 3.8E+02 0.0082 25.8 10.3 99 155-253 259-366 (370)
80 PRK01156 chromosome segregatio 37.2 5.8E+02 0.013 27.8 22.5 20 144-163 642-661 (895)
81 PF12309 KBP_C: KIF-1 binding 36.6 4.3E+02 0.0094 26.8 10.9 57 287-350 306-362 (371)
82 PF05278 PEARLI-4: Arabidopsis 36.6 1.6E+02 0.0035 29.4 7.7 92 135-235 133-230 (269)
83 PF10168 Nup88: Nuclear pore c 35.9 3.6E+02 0.0078 29.8 10.9 30 304-333 637-666 (717)
84 PRK00182 tatB sec-independent 35.7 2.5E+02 0.0053 26.2 8.3 56 291-349 13-68 (160)
85 TIGR00219 mreC rod shape-deter 35.5 1.2E+02 0.0025 29.4 6.5 53 185-240 60-112 (283)
86 PF08232 Striatin: Striatin fa 35.4 1.1E+02 0.0024 26.8 5.8 46 346-392 26-71 (134)
87 PF12718 Tropomyosin_1: Tropom 35.2 3.2E+02 0.0069 24.2 13.0 69 172-240 2-70 (143)
88 PF15290 Syntaphilin: Golgi-lo 34.5 1.2E+02 0.0026 30.9 6.6 46 315-364 63-112 (305)
89 PF12128 DUF3584: Protein of u 34.2 7.9E+02 0.017 28.4 30.6 49 303-355 604-652 (1201)
90 PF04156 IncA: IncA protein; 34.0 3.2E+02 0.007 23.9 11.0 24 138-161 123-146 (191)
91 PF07716 bZIP_2: Basic region 33.8 1.6E+02 0.0034 21.7 5.6 44 46-90 7-50 (54)
92 KOG0978 E3 ubiquitin ligase in 32.9 7.6E+02 0.017 27.9 20.3 120 113-236 464-618 (698)
93 PF05622 HOOK: HOOK protein; 32.4 15 0.00032 39.1 0.0 82 107-210 322-403 (713)
94 PF06582 DUF1136: Repeat of un 31.8 32 0.00069 23.6 1.5 13 371-383 9-21 (28)
95 PF04156 IncA: IncA protein; 31.3 3.6E+02 0.0078 23.6 11.6 41 65-105 102-142 (191)
96 PF08581 Tup_N: Tup N-terminal 31.3 2E+02 0.0044 23.7 6.3 60 69-128 15-75 (79)
97 KOG1029 Endocytic adaptor prot 31.2 9.3E+02 0.02 28.3 14.0 68 171-238 445-519 (1118)
98 KOG0963 Transcription factor/C 31.1 8E+02 0.017 27.5 20.3 156 68-239 83-269 (629)
99 KOG0977 Nuclear envelope prote 31.0 7.4E+02 0.016 27.1 14.4 55 199-253 93-147 (546)
100 PF12325 TMF_TATA_bd: TATA ele 30.8 3.7E+02 0.008 23.6 8.5 45 306-350 16-63 (120)
101 KOG1899 LAR transmembrane tyro 30.7 7.2E+02 0.016 28.4 12.0 74 83-184 122-195 (861)
102 TIGR00634 recN DNA repair prot 30.4 6.5E+02 0.014 26.3 14.8 37 218-254 345-389 (563)
103 KOG0979 Structural maintenance 30.3 9.9E+02 0.021 28.4 18.1 207 12-226 170-395 (1072)
104 PF06785 UPF0242: Uncharacteri 29.8 7E+02 0.015 26.5 11.7 119 243-385 88-212 (401)
105 PRK10884 SH3 domain-containing 29.6 4E+02 0.0086 25.2 8.8 34 205-238 118-151 (206)
106 PF13815 Dzip-like_N: Iguana/D 29.6 2.5E+02 0.0054 23.8 6.8 85 149-237 24-112 (118)
107 PF07989 Microtub_assoc: Micro 29.3 1.9E+02 0.0042 23.4 5.8 58 171-228 15-73 (75)
108 PF03999 MAP65_ASE1: Microtubu 29.3 2E+02 0.0043 30.6 7.4 52 317-368 327-390 (619)
109 PF05852 DUF848: Gammaherpesvi 29.2 1E+02 0.0022 28.3 4.7 46 65-127 61-106 (146)
110 KOG0250 DNA repair protein RAD 28.9 1E+03 0.023 28.2 24.7 231 74-354 216-452 (1074)
111 KOG0977 Nuclear envelope prote 28.9 8.1E+02 0.017 26.9 24.6 61 300-360 304-364 (546)
112 PF05266 DUF724: Protein of un 28.7 1.6E+02 0.0034 27.5 5.9 69 80-148 111-183 (190)
113 PF14357 DUF4404: Domain of un 28.5 73 0.0016 26.1 3.3 72 320-397 4-76 (85)
114 PF05769 DUF837: Protein of un 28.3 4.8E+02 0.01 24.1 13.8 37 203-239 144-180 (181)
115 KOG4603 TBP-1 interacting prot 27.8 5.2E+02 0.011 25.1 9.2 47 195-241 76-122 (201)
116 PRK15422 septal ring assembly 27.7 2.1E+02 0.0046 24.2 5.9 34 205-238 4-37 (79)
117 PRK11032 hypothetical protein; 27.6 82 0.0018 29.0 3.9 37 311-347 1-47 (160)
118 PF02416 MttA_Hcf106: mttA/Hcf 27.5 2E+02 0.0044 21.8 5.3 42 291-332 9-50 (53)
119 TIGR01410 tatB twin arginine-t 27.5 3.4E+02 0.0074 22.1 7.0 44 291-334 11-54 (80)
120 PF05529 Bap31: B-cell recepto 27.3 2.5E+02 0.0053 25.1 6.7 15 302-316 128-142 (192)
121 COG0419 SbcC ATPase involved i 27.2 8.9E+02 0.019 26.9 34.0 66 92-161 273-338 (908)
122 PRK10361 DNA recombination pro 26.7 8.2E+02 0.018 26.3 17.0 53 175-230 111-165 (475)
123 PF05483 SCP-1: Synaptonemal c 26.6 1E+03 0.022 27.3 24.9 47 115-161 273-319 (786)
124 COG3074 Uncharacterized protei 26.3 1.2E+02 0.0027 25.5 4.3 31 206-236 5-35 (79)
125 PF10267 Tmemb_cc2: Predicted 26.0 3.3E+02 0.0072 28.4 8.2 68 139-206 245-317 (395)
126 PF08988 DUF1895: Protein of u 25.9 1.6E+02 0.0034 23.8 4.7 12 179-190 1-12 (68)
127 COG2433 Uncharacterized conser 25.8 4.6E+02 0.01 29.4 9.5 87 142-232 419-508 (652)
128 KOG0288 WD40 repeat protein Ti 25.8 4.7E+02 0.01 28.2 9.3 70 62-134 10-79 (459)
129 KOG0612 Rho-associated, coiled 25.6 1.3E+03 0.028 28.1 27.0 111 18-131 418-543 (1317)
130 PF10174 Cast: RIM-binding pro 25.5 1E+03 0.022 27.0 27.4 153 81-238 324-484 (775)
131 PF06818 Fez1: Fez1; InterPro 25.3 5.7E+02 0.012 24.7 9.1 40 65-104 66-105 (202)
132 PF06428 Sec2p: GDP/GTP exchan 25.3 41 0.0009 28.7 1.5 64 174-237 19-83 (100)
133 PRK04654 sec-independent trans 24.7 6.7E+02 0.015 24.6 10.7 61 291-356 12-72 (214)
134 PF04111 APG6: Autophagy prote 24.6 6.9E+02 0.015 24.7 10.6 43 116-158 42-84 (314)
135 PF15566 Imm18: Immunity prote 24.6 35 0.00077 26.7 0.8 22 79-103 2-24 (52)
136 PF01093 Clusterin: Clusterin; 24.5 3.9E+02 0.0084 28.4 8.4 57 310-374 31-95 (436)
137 PF08317 Spc7: Spc7 kinetochor 24.2 6.8E+02 0.015 24.5 12.0 62 164-225 203-264 (325)
138 PRK04098 sec-independent trans 24.1 5.1E+02 0.011 24.1 8.3 42 291-332 12-53 (158)
139 PF15450 DUF4631: Domain of un 24.1 3.8E+02 0.0082 29.3 8.4 80 57-136 386-474 (531)
140 PF08647 BRE1: BRE1 E3 ubiquit 23.7 3.1E+02 0.0068 22.6 6.2 69 71-156 2-70 (96)
141 PRK13922 rod shape-determining 23.6 2.5E+02 0.0054 26.2 6.3 52 185-240 63-114 (276)
142 PF09738 DUF2051: Double stran 23.6 3.2E+02 0.007 27.4 7.4 34 69-102 102-135 (302)
143 PF05622 HOOK: HOOK protein; 23.5 27 0.00058 37.3 0.0 185 21-232 457-649 (713)
144 KOG1003 Actin filament-coating 23.2 7.1E+02 0.015 24.4 12.6 130 199-337 5-161 (205)
145 PF10046 BLOC1_2: Biogenesis o 22.8 2.9E+02 0.0063 22.9 5.9 68 81-162 9-76 (99)
146 KOG4436 Predicted GTPase activ 22.3 1.1E+02 0.0024 35.1 4.3 49 310-360 826-877 (948)
147 PF09789 DUF2353: Uncharacteri 21.9 2.4E+02 0.0051 28.7 6.2 71 64-138 139-217 (319)
148 COG1390 NtpE Archaeal/vacuolar 21.8 4.3E+02 0.0093 24.7 7.4 21 361-381 36-56 (194)
149 PRK05431 seryl-tRNA synthetase 21.3 5E+02 0.011 26.6 8.4 73 13-85 25-100 (425)
150 PF06583 Neogenin_C: Neogenin 21.0 53 0.0012 33.2 1.5 22 333-354 289-310 (319)
151 PF05529 Bap31: B-cell recepto 20.9 4.7E+02 0.01 23.3 7.3 38 197-234 153-190 (192)
152 PF13851 GAS: Growth-arrest sp 20.2 7E+02 0.015 23.2 14.0 86 169-257 99-195 (201)
153 PF12325 TMF_TATA_bd: TATA ele 20.2 6E+02 0.013 22.3 8.2 82 64-145 15-96 (120)
No 1
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.94 E-value=0.04 Score=57.79 Aligned_cols=96 Identities=20% Similarity=0.312 Sum_probs=61.6
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhh
Q 015871 15 VEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEE 94 (399)
Q Consensus 15 ~eellqi~trc~~lrkek~~lr~sqsqs~eli~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~E 94 (399)
..++..+..+...+..+.+.++..-...-.-+..+.-....+......-...+..++.++-++..++.-++.++..-..+
T Consensus 673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~ 752 (1164)
T TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888877776555444445555444444444444455556667777777777777777777666666
Q ss_pred hhhhhhhhhhhhhhhc
Q 015871 95 VYSLSEHVHSLELKLV 110 (399)
Q Consensus 95 vn~l~EHih~LElKL~ 110 (399)
+..+...+..++-++.
T Consensus 753 ~~~~~~el~~l~~~i~ 768 (1164)
T TIGR02169 753 IENVKSELKELEARIE 768 (1164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666555554
No 2
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.05 E-value=0.53 Score=49.18 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=13.5
Q ss_pred chHHHHHhHHHHHhhHHHH
Q 015871 303 NLKEKIKGMSLQICEYELL 321 (399)
Q Consensus 303 ~lk~kme~Ms~qi~eyE~L 321 (399)
.|+..++.|...|.+|+.+
T Consensus 969 ~l~~~i~~lg~aiee~~~~ 987 (1179)
T TIGR02168 969 EARRRLKRLENKIKELGPV 987 (1179)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 4567777777788888754
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.47 E-value=2 Score=47.82 Aligned_cols=167 Identities=29% Similarity=0.417 Sum_probs=104.4
Q ss_pred HHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhh-------ccc----cchHHHHHHHHHHHhhccchhHH
Q 015871 67 IQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKL-------VDM----EILQDKVGQLEEELRRSDSECLL 135 (399)
Q Consensus 67 Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL-------~~~----e~l~e~V~~l~eEL~rS~Se~~l 135 (399)
+..+...+-.+..+|.=|...+..-+.+++-+.+.+++++=.+ ... ..+.+.+..++.++...+...--
T Consensus 732 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (1163)
T COG1196 732 LEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDA 811 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555544444444444444444444443333 321 23345556666666666666666
Q ss_pred HHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhH
Q 015871 136 LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQ 215 (399)
Q Consensus 136 LmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q 215 (399)
+-.++.+.+...+...-.|+.+++.+.. -+=.+.+++.++..++..+...+.--.+.-.+...++..+..++....
T Consensus 812 ~~~~~~~~~~~~~~~~~ei~~l~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~ 887 (1163)
T COG1196 812 LERELESLEQRRERLEQEIEELEEEIEE----LEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKE 887 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777766652 233566788888888888888887777777777777777777777777
Q ss_pred hHHHHHHHHHHhhHHHHHhhhh
Q 015871 216 DSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 216 ~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
+..+.+..+.....+++.....
T Consensus 888 ~l~~~l~~~~~~~~~~~~~~~~ 909 (1163)
T COG1196 888 ELEEELRELESELAELKEEIEK 909 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666666544433
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.39 E-value=1.7 Score=46.01 Aligned_cols=42 Identities=29% Similarity=0.488 Sum_probs=27.7
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh
Q 015871 315 ICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSL 357 (399)
Q Consensus 315 i~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTgl 357 (399)
|.+|+.+.+++ +.|..+.-...+....|.+-+..|+..+...
T Consensus 978 i~~~~~~~~~~-~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~ 1019 (1164)
T TIGR02169 978 IQEYEEVLKRL-DELKEKRAKLEEERKAILERIEEYEKKKREV 1019 (1164)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677766554 4566666677777777777788887444433
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=96.36 E-value=1.7 Score=45.85 Aligned_cols=32 Identities=9% Similarity=0.195 Sum_probs=19.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhh
Q 015871 60 HNEDKKHIQKLERELMNCSQEIDYLQDQLNAR 91 (399)
Q Consensus 60 ~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~R 91 (399)
...-+..+..+..++....+++.+++.+++.-
T Consensus 208 l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l 239 (880)
T PRK02224 208 LNGLESELAELDEEIERYEEQREQARETRDEA 239 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666665433
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.99 E-value=3.6 Score=45.98 Aligned_cols=148 Identities=28% Similarity=0.373 Sum_probs=66.5
Q ss_pred HHHHHhhhhhhhHhhHHhhhhhhhhhhhhh-------hhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhh
Q 015871 70 LERELMNCSQEIDYLQDQLNARNEEVYSLS-------EHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQS 142 (399)
Q Consensus 70 LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~-------EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~ 142 (399)
+..++.+...+|..++++++.++.+...+. +.+.+++-.+.+.+ .++..+..++.......=-+-+++..
T Consensus 756 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ei~~ 832 (1163)
T COG1196 756 LQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAE---RRLDALERELESLEQRRERLEQEIEE 832 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666655555555544 34444444443333 44444445544444433334444444
Q ss_pred HHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 015871 143 KEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIE 222 (399)
Q Consensus 143 kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~ 222 (399)
.+.+.......+.-|...+.++ ...+++++-.+..+....-+...--...-.+...+++.+.++...+..+...|.
T Consensus 833 l~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 908 (1163)
T COG1196 833 LEEEIEELEEKLDELEEELEEL----EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIE 908 (1163)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333444444333322 234444444444444444444333333344444444444444444444443333
Q ss_pred HH
Q 015871 223 CL 224 (399)
Q Consensus 223 ~L 224 (399)
.+
T Consensus 909 ~~ 910 (1163)
T COG1196 909 KL 910 (1163)
T ss_pred HH
Confidence 33
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.54 E-value=5.6 Score=44.97 Aligned_cols=248 Identities=12% Similarity=0.175 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhh---hhhhhhhhhhhc----cccchHHHHHHHHHHHhhccchhHHHH
Q 015871 65 KHIQKLERELMNCSQEIDYLQDQLNARNEEVYSL---SEHVHSLELKLV----DMEILQDKVGQLEEELRRSDSECLLLM 137 (399)
Q Consensus 65 ~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l---~EHih~LElKL~----~~e~l~e~V~~l~eEL~rS~Se~~lLm 137 (399)
.-|+.++.++.....+|+=++.+..-++.+++.| -.-+.+..+++. ...+|++++..|.+++ =-+-
T Consensus 829 ~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el-------~~l~ 901 (1311)
T TIGR00606 829 QEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV-------QSLI 901 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 3466666666666666666687777777777777 333333333333 3333333333333333 2222
Q ss_pred HHhhhHHHHhhhhhhhHHHHHhhhhccc-------cccccchhhhhhhHHHHHHHHHHHhhhhhhhHHH-HHHHHHHHHH
Q 015871 138 EELQSKEERLRNSALHIKKLEESISSSA-------LESQCEIESLKIDMIALEQTCVEAKKVHKENVQE-KARMNSLIKE 209 (399)
Q Consensus 138 qEle~kE~ELq~Sal~IeKLEESiSS~t-------LeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~e-k~~m~~~i~E 209 (399)
.++...+.++.--.-.++++......+. =..|=++..++=++..|....=+...+-+..... -..+..-+..
T Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~ 981 (1311)
T TIGR00606 902 REIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNT 981 (1311)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222233333333333333332222211 1223345555555555555544444433332211 3334444444
Q ss_pred HHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHH--Hhhhhhcchhhhhhhhhhhhcccccccccchhhhh
Q 015871 210 LEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEW--MEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVF 287 (399)
Q Consensus 210 lq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~~e~--lE~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f 287 (399)
+...+.+.+.-+..+..+.+.++..+.....--+.+...+..+ ...-.........+....... +. +. |
T Consensus 982 ~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~-----~~---~~-~ 1052 (1311)
T TIGR00606 982 VNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM-----QV---LQ-M 1052 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cH---HH-H
Confidence 4445555555555555556666555555443333333333322 111111112222222222221 00 11 1
Q ss_pred HHHHHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 015871 288 GALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRA 331 (399)
Q Consensus 288 ~~l~~kL~~~~~~d~~lk~kme~Ms~qi~eyE~LvkQLKeELRE 331 (399)
..-...|.-- -..|...--.+.-+...++.-|.+|+.+|.+
T Consensus 1053 ~~e~~~l~~~---~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1053 KQEHQKLEEN---IDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1112222110 1112222334556677888888999999976
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.59 E-value=7.2 Score=41.09 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=6.1
Q ss_pred HHHHhHHHHHHHHhh
Q 015871 17 ELLQIETRCRELRKE 31 (399)
Q Consensus 17 ellqi~trc~~lrke 31 (399)
++-.+......++++
T Consensus 678 e~~~l~~~~~~l~~~ 692 (1179)
T TIGR02168 678 EIEELEEKIEELEEK 692 (1179)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.49 E-value=15 Score=44.41 Aligned_cols=198 Identities=22% Similarity=0.301 Sum_probs=116.4
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhh
Q 015871 21 IETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSE 100 (399)
Q Consensus 21 i~trc~~lrkek~~lr~sqsqs~eli~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~E 100 (399)
..+.+++++.+++-||+.-...++-..-|..+ +|.+.+++-...-+++.++..|-.|++=.+--+.-|= ..+.+
T Consensus 1320 l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~---lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~l---q~~qe 1393 (1930)
T KOG0161|consen 1320 LENALRQLEHELDLLREQLEEEQEAKNELERK---LSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRL---QELEE 1393 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHH
Confidence 44557788889999998888888777766544 6777777777788888888888888877665554442 23344
Q ss_pred hhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHH
Q 015871 101 HVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMI 180 (399)
Q Consensus 101 Hih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~ 180 (399)
++--+..+...+++. -++|+.|+....+. ++.+.+.-..|.+-....+|+=...-...-++++|++-..=+.-
T Consensus 1394 ~~e~~~~~~~~Lek~---k~~l~~el~d~~~d----~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r 1466 (1930)
T KOG0161|consen 1394 QIEAANAKNASLEKA---KNRLQQELEDLQLD----LERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELR 1466 (1930)
T ss_pred HHHHHHHHHHHHHHH---HHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443332 23333333322211 12222222222222222333322233334566777776666655
Q ss_pred HHHHHHHH-------HhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHH
Q 015871 181 ALEQTCVE-------AKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKEL 231 (399)
Q Consensus 181 aLEQ~lfd-------A~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL 231 (399)
.++..+|- +..-.+..-.+|..|..-|.++..++.++.+.+..|++.++-+
T Consensus 1467 ~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~l 1524 (1930)
T KOG0161|consen 1467 QLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRL 1524 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554 4444455555777778888888888888888877766665544
No 10
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.19 E-value=9.4 Score=40.87 Aligned_cols=28 Identities=36% Similarity=0.461 Sum_probs=14.9
Q ss_pred HHHhhhHHHHhhhhhhhHHHHHhhhhcc
Q 015871 137 MEELQSKEERLRNSALHIKKLEESISSS 164 (399)
Q Consensus 137 mqEle~kE~ELq~Sal~IeKLEESiSS~ 164 (399)
-+|.+.-..++..+.-.|.+||+-|-++
T Consensus 205 ~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 205 KEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555566666777544443
No 11
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.93 E-value=5.2 Score=36.98 Aligned_cols=233 Identities=27% Similarity=0.317 Sum_probs=152.2
Q ss_pred HHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHH
Q 015871 66 HIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEE 145 (399)
Q Consensus 66 ~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ 145 (399)
.|+.|..++-.=.+.++.++..|.--+..+..... +...|.-++..|.++|-+.....--..+-|+..+.
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~----------e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~ 71 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEA----------EVASLQRRIQLLEEELERAEERLEEATEKLEEAEK 71 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666665544433333222 23355667777777887777777677777777777
Q ss_pred HhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 015871 146 RLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLD 225 (399)
Q Consensus 146 ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~ 225 (399)
.+.-+--....||....+. + -| |..||+.|=+|+....++-.--.-..+-+.-++..+..|.+-++.++
T Consensus 72 ~~de~er~~k~lE~r~~~~--e-------er--i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E 140 (237)
T PF00261_consen 72 RADESERARKVLENREQSD--E-------ER--IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAE 140 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHH--H-------HH--HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH--H-------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777777777432211 1 12 45789999999999998888888888888889999999999999999
Q ss_pred HhhHHHHHhhhhccchhHHHHHHhHHHHhhhhhcchhhhhhhhhhhhcccccccccchhhhhHHHHHHHHHhhCCCCchH
Q 015871 226 KENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLK 305 (399)
Q Consensus 226 keNkeL~ekl~~se~n~r~~~q~~~e~lE~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~~kL~~~~~~d~~lk 305 (399)
...++|.+.|..-..|.+.+-.+....-+.++... .. +..|-.+|.-+ -
T Consensus 141 ~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e-----------~~-------------i~~L~~~lkea-------E 189 (237)
T PF00261_consen 141 SKIKELEEELKSVGNNLKSLEASEEKASEREDEYE-----------EK-------------IRDLEEKLKEA-------E 189 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH-------------HHHHHHHHHHH-------H
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-----------HH-------------HHHHHHHHHHH-------H
Confidence 99999999998876666644333221111111100 00 11112222111 0
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 015871 306 EKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAEL 350 (399)
Q Consensus 306 ~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAEL 350 (399)
.-.+..-+.+..++--|..|.++|...|.+-+.=..+|-+-|++|
T Consensus 190 ~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 190 NRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223344567778888899999999999988888777777777765
No 12
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.82 E-value=9.5 Score=41.94 Aligned_cols=143 Identities=24% Similarity=0.351 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHhhhhhhhHhhH---HhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHh
Q 015871 64 KKHIQKLERELMNCSQEIDYLQ---DQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEEL 140 (399)
Q Consensus 64 k~~Iq~LEkELlNC~QEIDYLq---DQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEl 140 (399)
..+|..|+.||..+-++++--+ |.|+..+.++ ++. .+.++-+..+||+|++--+.--.-|||+.
T Consensus 33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~---~~~----------~~~~e~~~~~lr~e~ke~K~rE~rll~dy 99 (717)
T PF09730_consen 33 QQRILELENELKQLRQELSNVQAENERLSQLNQEL---RKE----------CEDLELERKRLREEIKEYKFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3467888888888888886554 4454444443 333 45566788999999999988888888865
Q ss_pred hhHH---HHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhH
Q 015871 141 QSKE---ERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDS 217 (399)
Q Consensus 141 e~kE---~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~A 217 (399)
-.-| +-|||.... -=.||-|.|+||.++..|+=-.- +-.-.++|-.+++.+ .+-|+.+|
T Consensus 100 selEeENislQKqvs~-----------Lk~sQvefE~~Khei~rl~Ee~~----~l~~qlee~~rLk~i---ae~qleEA 161 (717)
T PF09730_consen 100 SELEEENISLQKQVSV-----------LKQSQVEFEGLKHEIKRLEEEIE----LLNSQLEEAARLKEI---AEKQLEEA 161 (717)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---HHHHHHHH
Confidence 4444 446665433 33799999999999988863221 111223444444443 46788999
Q ss_pred HHHHHHHHHhhHHHHHhhhh
Q 015871 218 QEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 218 qe~i~~L~keNkeL~ekl~~ 237 (399)
-+++..=..+.-.||.-|+.
T Consensus 162 Lesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 162 LESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888887776
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.67 E-value=8.3 Score=38.40 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=52.2
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhh
Q 015871 23 TRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHV 102 (399)
Q Consensus 23 trc~~lrkek~~lr~sqsqs~eli~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHi 102 (399)
.+.++++.+.+.++..-..--.-+..++-....+... -...|+.+++++-++..+...+..|++.-..++..++.++
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~---~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i 250 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK---NGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDI 250 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455666666666655554444444333333333332 2356888999999999888888888888888887777766
Q ss_pred hhhh
Q 015871 103 HSLE 106 (399)
Q Consensus 103 h~LE 106 (399)
.+++
T Consensus 251 ~~~~ 254 (562)
T PHA02562 251 EDPS 254 (562)
T ss_pred ccHH
Confidence 6543
No 14
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.91 E-value=24 Score=41.62 Aligned_cols=268 Identities=22% Similarity=0.246 Sum_probs=147.4
Q ss_pred hhhhhhhhhHHHHHHHhhhhhhhhhhhhhhHHH-------HHHH---HHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhh
Q 015871 35 LRESQSQSFDLIKRLELHAKSLSEAHNEDKKHI-------QKLE---RELMNCSQEIDYLQDQLNARNEEVYSLSEHVHS 104 (399)
Q Consensus 35 lr~sqsqs~eli~rleL~~~slSea~~eDk~~I-------q~LE---kELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~ 104 (399)
|++-+.+.=++++++---+-++|+|-+.-.+-. ++++ +||.|=.|+|.-...|=.+--..+.-+.+-|..
T Consensus 1424 l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~ 1503 (1758)
T KOG0994|consen 1424 LRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLA 1503 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 455556666677777777777777766544332 2333 588888888855555556677778888999999
Q ss_pred hhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHH
Q 015871 105 LELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQ 184 (399)
Q Consensus 105 LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ 184 (399)
||++++ ++.|..|-+++. .++.+|...+.-++ --|-|+.--|+
T Consensus 1504 l~lp~t-----peqi~~L~~~I~---------------------e~v~sL~nVd~IL~-----------~T~~di~ra~~ 1546 (1758)
T KOG0994|consen 1504 LELPLT-----PEQIQQLTGEIQ---------------------ERVASLPNVDAILS-----------RTKGDIARAEN 1546 (1758)
T ss_pred ccCCCC-----HHHHHHHHHHHH---------------------HHHHhcccHHHHHH-----------hhhhhHHHHHH
Confidence 999887 455555544433 33344444443222 23667777777
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhhhhhcch
Q 015871 185 TCVEAKKVHKENVQEKARMNSLIKELE---VRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQL 261 (399)
Q Consensus 185 ~lfdA~k~q~et~~ek~~m~~~i~Elq---~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~~e~lE~ed~~~l 261 (399)
-+-+|.+--..+-..+..|+.+++-|+ .....|+..|+..+.-..--...|. ++.+.+..-....-
T Consensus 1547 L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~-----------kv~~~t~~aE~~~~ 1615 (1758)
T KOG0994|consen 1547 LQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLA-----------KVQEETAAAEKLAT 1615 (1758)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 777777777777777777776655544 3444555555554443332222222 11111111111111
Q ss_pred hhhhhhhhhhhcccccc----cccchhhhhHHHHHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhh
Q 015871 262 DIQSLVSELERNFTVSK----ETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAK 337 (399)
Q Consensus 262 ~~q~~~~~l~~~~~~s~----~~~~c~~~f~~l~~kL~~~~~~d~~lk~kme~Ms~qi~eyE~LvkQLKeELREEKLKAK 337 (399)
+...-..+|+.. |++ -+.+-+.- .-+.+.+-.+.... .-.++-..+++.|--++++|-+.--+.-.-|.
T Consensus 1616 ~a~q~~~eL~~~--~e~lk~~~~qns~~A--~~a~~~a~sa~~~A---~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar 1688 (1758)
T KOG0994|consen 1616 SATQQLGELETR--MEELKHKAAQNSAEA--KQAEKTAGSAKEQA---LSAEQGLEILQKYYELVDRLLEKRMEGSQAAR 1688 (1758)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhccHHH--HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 111111111111 000 00011100 00111111000000 11234455788888899999888888888999
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 015871 338 EEAEDLAQEMAELRYQMTSL 357 (399)
Q Consensus 338 EEAEDLtQEMAELRYQmTgl 357 (399)
+-||-|-+|-+.|=||-...
T Consensus 1689 ~rAe~L~~eA~~Ll~~a~~k 1708 (1758)
T KOG0994|consen 1689 ERAEQLRTEAEKLLGQANEK 1708 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986544
No 15
>PRK03918 chromosome segregation protein; Provisional
Probab=92.82 E-value=15 Score=38.84 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhh
Q 015871 65 KHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHV 102 (399)
Q Consensus 65 ~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHi 102 (399)
.-+..+++++-.+.+++.-|++++..-..+++.+.+..
T Consensus 200 ~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~ 237 (880)
T PRK03918 200 KELEEVLREINEISSELPELREELEKLEKEVKELEELK 237 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556777777777777777776655544444444433
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.60 E-value=22 Score=40.40 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=21.5
Q ss_pred hhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccc
Q 015871 96 YSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDS 131 (399)
Q Consensus 96 n~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~S 131 (399)
+.|..+|..+.-=..++.++...|..+..++..+.+
T Consensus 785 esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~ 820 (1311)
T TIGR00606 785 KVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL 820 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 334455544444455666667777777777776665
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=92.49 E-value=17 Score=38.70 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=16.0
Q ss_pred HHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871 206 LIKELEVRTQDSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 206 ~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
.+.....++.++...++.|.++..+|+..+..
T Consensus 524 ~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~ 555 (880)
T PRK02224 524 LIAERRETIEEKRERAEELRERAAELEAEAEE 555 (880)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555444433
No 18
>PRK11637 AmiB activator; Provisional
Probab=92.25 E-value=13 Score=36.89 Aligned_cols=87 Identities=13% Similarity=0.231 Sum_probs=58.6
Q ss_pred ccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHH
Q 015871 167 ESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFC 246 (399)
Q Consensus 167 eSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~ 246 (399)
+.+=++..++-.+..+++.+-+..+-..+...+.+.++.-|..++.++.+.+.-|..++.+...+...+...+.......
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777777777777777777777777777777777777777777777777666666655555544
Q ss_pred HHhHHHH
Q 015871 247 QKIEEWM 253 (399)
Q Consensus 247 q~~~e~l 253 (399)
..+..++
T Consensus 124 ~~l~~rl 130 (428)
T PRK11637 124 RLLAAQL 130 (428)
T ss_pred HHHHHHH
Confidence 4444444
No 19
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.80 E-value=43 Score=36.61 Aligned_cols=154 Identities=29% Similarity=0.384 Sum_probs=92.3
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHHHHHHh---hhhhhhH-hhHHhhhhhhhhhhh-----------hhhhhhhhhhhhccc
Q 015871 48 RLELHAKSLSEAHNEDKKHIQKLERELM---NCSQEID-YLQDQLNARNEEVYS-----------LSEHVHSLELKLVDM 112 (399)
Q Consensus 48 rleL~~~slSea~~eDk~~Iq~LEkELl---NC~QEID-YLqDQLn~Rn~Evn~-----------l~EHih~LElKL~~~ 112 (399)
-|+-....|..|+..||..|+.|||=|. -.-+.++ =|+.+=.+|-.|.-. -+|.--.+--+.
T Consensus 471 ~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~--- 547 (697)
T PF09726_consen 471 QLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRR--- 547 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHH---
Confidence 3566677899999999999999998653 3333332 122222233322100 012222222222
Q ss_pred cchHHHHHHHHHHHhhccchhHHHHHHhh---------hHHHHhhhhhhhH-----HHHHhhhhccccccccchhhhhhh
Q 015871 113 EILQDKVGQLEEELRRSDSECLLLMEELQ---------SKEERLRNSALHI-----KKLEESISSSALESQCEIESLKID 178 (399)
Q Consensus 113 e~l~e~V~~l~eEL~rS~Se~~lLmqEle---------~kE~ELq~Sal~I-----eKLEESiSS~tLeSQcEIESmKLD 178 (399)
.+|+.++..||-||+-.+..+..+-.|++ .++.|.=.++|+. ..||.|.|.=| -||+|
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt--------riKld 619 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAET--------RIKLD 619 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHH
Confidence 45568899999999998888888877663 2234444555544 24666665433 35555
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhh
Q 015871 179 MIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLD 236 (399)
Q Consensus 179 ~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~ 236 (399)
||-| +.+-.-|+-.|+..|..=++|+.+|+-|+.
T Consensus 620 -------Lfsa-----------------Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 620 -------LFSA-----------------LGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred -------HHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433 455566677777778888888888887664
No 20
>PRK09039 hypothetical protein; Validated
Probab=85.11 E-value=42 Score=33.26 Aligned_cols=132 Identities=16% Similarity=0.235 Sum_probs=83.0
Q ss_pred hhHHhhhhhhhhhhhhhhhhhh----hhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHH
Q 015871 83 YLQDQLNARNEEVYSLSEHVHS----LELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLE 158 (399)
Q Consensus 83 YLqDQLn~Rn~Evn~l~EHih~----LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLE 158 (399)
||.+|+.-+..|++.|..+|-. |.+--....+++.+|..++..+. -++.... .|+
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~-----------~a~~~r~----------~Le 101 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS-----------AAEAERS----------RLQ 101 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHH----------HHH
Confidence 4555566666666555555543 34555566778888888887776 2222222 233
Q ss_pred hhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 015871 159 ESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 238 (399)
Q Consensus 159 ESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~s 238 (399)
..+... .=.--.+.--...|...|=..+..-.+.-..-.+++.-|..|+-|+...+.-|+-.+.+.++.+.++...
T Consensus 102 ~~~~~~----~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 102 ALLAEL----AGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHhhh----hhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 0001233444556677787777777777777888888888888888888888888888887777777664
Q ss_pred c
Q 015871 239 E 239 (399)
Q Consensus 239 e 239 (399)
.
T Consensus 178 ~ 178 (343)
T PRK09039 178 G 178 (343)
T ss_pred H
Confidence 3
No 21
>smart00338 BRLZ basic region leucin zipper.
Probab=84.82 E-value=3.6 Score=31.04 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=47.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhh
Q 015871 44 DLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLS 99 (399)
Q Consensus 44 eli~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~ 99 (399)
...+|+.-+.-|+..++..-+.||+.||.++..-..+.+-|+.+++.=..|+..|-
T Consensus 5 k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 5 KRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888999999999999999999999999999999999988877666665553
No 22
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.80 E-value=45 Score=33.34 Aligned_cols=117 Identities=15% Similarity=0.228 Sum_probs=56.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhh--------hhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHH
Q 015871 55 SLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNA--------RNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEEL 126 (399)
Q Consensus 55 slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~--------Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL 126 (399)
..+......+.++..++.++-.+-.+|+.+++++.. +..-...+.++--.++--+.....+..++..+++++
T Consensus 164 ~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 164 VLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666665541 111111111111112222233344556666666666
Q ss_pred hhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccc
Q 015871 127 RRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCE 171 (399)
Q Consensus 127 ~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcE 171 (399)
..-.++-=.+-+.|...+.++..+...+++++..+.-++-...|.
T Consensus 244 ~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp 288 (562)
T PHA02562 244 LNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCP 288 (562)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 444333222334445555555556666666666655554333443
No 23
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=83.04 E-value=30 Score=31.16 Aligned_cols=107 Identities=22% Similarity=0.288 Sum_probs=58.5
Q ss_pred cchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhh
Q 015871 113 EILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKV 192 (399)
Q Consensus 113 e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~ 192 (399)
+.|++.|..|..||-.|--....++-+.+++..+ |+.|++-|+-+| =....|+.-|..-.+-
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~e-------ie~L~~el~~lt-----------~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLILDAENSKAE-------IETLEEELEELT-----------SELNQLELELDTLRSE 81 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 3445555555555555544444444444433332 333443333332 2233355555555555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871 193 HKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 193 q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
-+.-.+.-..|.+-|.+|+.-.-+....|.-++.+..++.+-+.+
T Consensus 82 k~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~ 126 (140)
T PF10473_consen 82 KENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKS 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666677777777777777777777777776666665554
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=81.25 E-value=1.1e+02 Score=35.05 Aligned_cols=260 Identities=23% Similarity=0.350 Sum_probs=141.8
Q ss_pred HHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHH
Q 015871 65 KHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKE 144 (399)
Q Consensus 65 ~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE 144 (399)
..++.++.-|--|-....=+..+|...|..++-+-..+...+- .+...+..+.+++++..+-..++ -+.++
T Consensus 607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~------~~~~~ 677 (1201)
T PF12128_consen 607 ERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQ---ELKQAEQDLQRLKNEREQLKQEI------EEAKE 677 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 3444555555555555555666666666666666665555443 34455666677776664433222 22233
Q ss_pred HHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 015871 145 ERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECL 224 (399)
Q Consensus 145 ~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L 224 (399)
.+.+...-.+..++. ++..++-.+..+.+.+= ..+.+...+.|+.+..+..++..++.....-|...
T Consensus 678 ~~~~~~~~~l~~l~~-----------~l~~~~~e~~~~~~~~~--~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~ 744 (1201)
T PF12128_consen 678 ERKEQIEEQLNELEE-----------ELKQLKQELEELLEELK--EQLKELRNELKAQWQELEAELDEQIEQIKQEIAAA 744 (1201)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444442 23333334444444432 23445556777777777777777776666666555
Q ss_pred HHhhHHHHHhhhhccchhHHHHHHhHHHHhhhhhcchhhhhhhhhhhhcccccccccchhhhhHHHHHHHHHhhCCCCch
Q 015871 225 DKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANL 304 (399)
Q Consensus 225 ~keNkeL~ekl~~se~n~r~~~q~~~e~lE~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~~kL~~~~~~d~~l 304 (399)
..+.++-...|. .|+. ..|.+++++... ...+-..+.-. +..|
T Consensus 745 ~~~~~~~~~~le--------------~~~~----~eL~~~GvD~~~----------------I~~l~~~i~~L---~~~l 787 (1201)
T PF12128_consen 745 KQEAKEQLKELE--------------QQYN----QELAGKGVDPER----------------IQQLKQEIEQL---EKEL 787 (1201)
T ss_pred HHHHHHHHHHHH--------------HHHH----HHHHhCCCCHHH----------------HHHHHHHHHHH---HHHH
Confidence 444443333332 2221 113333333211 11112222110 0000
Q ss_pred HHHHHhHHHHHhhHHHHHHHH---HHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHH
Q 015871 305 KEKIKGMSLQICEYELLVKQL---KEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQ---ASLQRIAE 378 (399)
Q Consensus 305 k~kme~Ms~qi~eyE~LvkQL---KeELREEKLKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQ---ASLQRIaE 378 (399)
..++.-...+.+|+.-++.. .+.+++++-..+.+..++.++.++|+-+++....+==.+|+=+++ +.=+.+.+
T Consensus 788 -~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 866 (1201)
T PF12128_consen 788 -KRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQ 866 (1201)
T ss_pred -HHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788888888776 567888999999999999999999999888776655555666643 33344455
Q ss_pred HHHHHH
Q 015871 379 LETQIE 384 (399)
Q Consensus 379 LEAQi~ 384 (399)
+++.+.
T Consensus 867 ~~~~l~ 872 (1201)
T PF12128_consen 867 LEEQLR 872 (1201)
T ss_pred HHHHHH
Confidence 555543
No 25
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.89 E-value=1.7e+02 Score=34.83 Aligned_cols=99 Identities=21% Similarity=0.319 Sum_probs=60.3
Q ss_pred HHhhhHHHHhhhhhhhHHHHHhhhhccccccc-----------------cchhhhhhhHHHHHHHHHHHhhhhhhhHHHH
Q 015871 138 EELQSKEERLRNSALHIKKLEESISSSALESQ-----------------CEIESLKIDMIALEQTCVEAKKVHKENVQEK 200 (399)
Q Consensus 138 qEle~kE~ELq~Sal~IeKLEESiSS~tLeSQ-----------------cEIESmKLD~~aLEQ~lfdA~k~q~et~~ek 200 (399)
..++++..++.++--.|++|+--|...|.-.+ -+|+-+.=.+.+|.+-+-+.+....+.-.+-
T Consensus 900 e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~ 979 (1293)
T KOG0996|consen 900 EKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEY 979 (1293)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34555555555566666666555555443211 1233333333445555555555555555555
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHH-hhh
Q 015871 201 ARMNSLIKELEVRTQDSQEIIECLDKENKELKE-KLD 236 (399)
Q Consensus 201 ~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~e-kl~ 236 (399)
..-...|+|+.-++++....++.+.+..-+|+. +++
T Consensus 980 ~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId 1016 (1293)
T KOG0996|consen 980 KEAEESLKEIKKELRDLKSELENIKKSENELKAERID 1016 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 566778899999999999999998888888865 444
No 26
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=75.32 E-value=1.4e+02 Score=33.34 Aligned_cols=184 Identities=28% Similarity=0.298 Sum_probs=107.1
Q ss_pred HHHHHHHhhhhhhhh-h---hhh-hhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHH
Q 015871 44 DLIKRLELHAKSLSE-A---HNE-DKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDK 118 (399)
Q Consensus 44 eli~rleL~~~slSe-a---~~e-Dk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~ 118 (399)
++=++++....+..- | .-+ ---.|--||+-|..---||.-|+.++..-+++-+.+ ++.||..=........+
T Consensus 212 ~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~---~k~le~~~s~~~~mK~k 288 (775)
T PF10174_consen 212 QLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRL---DKQLEVYKSHSLAMKSK 288 (775)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH---HHHHHHHHhhHHHHHHH
Confidence 555677666554322 1 111 123577888888887778888888776655543322 23333333333334455
Q ss_pred HHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHH
Q 015871 119 VGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQ 198 (399)
Q Consensus 119 V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ 198 (399)
+.++.-||-+.+++.+-+=-+|+.......-.--+|++|-+|+.+. +=+.+-+--|+-+|-..|=.+
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~k----e~~~~~Lqsdve~Lr~rle~k--------- 355 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAK----EQEAEMLQSDVEALRFRLEEK--------- 355 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHH---------
Confidence 8888888888888888777777777776666666677766555432 112222333444444333222
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHH
Q 015871 199 EKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQK 248 (399)
Q Consensus 199 ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~ 248 (399)
+..+.-.+.++..+++-...+.-+..+|++.++..+.-+..+--+
T Consensus 356 -----~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 356 -----NSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234445556666666666666666777777777766555555444
No 27
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=74.89 E-value=76 Score=34.25 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=39.7
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 015871 306 EKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRR 365 (399)
Q Consensus 306 ~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTglLEEEcKRR 365 (399)
.+|..++.|-+.|..=...-...||...---..++-...+++.++|-+|-.+. +|++.+
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~-~e~~~K 466 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIE-EEIRQK 466 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 56667777777776644444444554444455778888999999999987754 455554
No 28
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=74.80 E-value=80 Score=30.12 Aligned_cols=74 Identities=26% Similarity=0.343 Sum_probs=55.3
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 015871 306 EKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQ-ASLQRIAELETQIE 384 (399)
Q Consensus 306 ~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQ-ASLQRIaELEAQi~ 384 (399)
..|++++++...+..-|-.|..+|-.+.-.+-+.-..+-++.+.++-+-.. |+.+.. ++. |--.||++||+|+.
T Consensus 75 ~~LK~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~e-l~~~r~----~e~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 75 QELKKSSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKE-LQNERE----RERIAYESRIADLERQLN 149 (196)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHhHHH----HHHHHHHHHHHHHHHHHH
Confidence 346679999999999999999999777777777778888888766655432 232222 333 45679999999996
No 29
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=74.13 E-value=15 Score=39.15 Aligned_cols=188 Identities=21% Similarity=0.256 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhh--------------------hhhhhhhhhhccccc----hHHH
Q 015871 63 DKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLS--------------------EHVHSLELKLVDMEI----LQDK 118 (399)
Q Consensus 63 Dk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~--------------------EHih~LElKL~~~e~----l~e~ 118 (399)
....+.+||+-..-=..|+|||+.||..=+.|...++ .|...++-.|..+.. ....
T Consensus 397 ~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~ 476 (722)
T PF05557_consen 397 LKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQR 476 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4556778999998899999999999987555543332 222222222211111 0111
Q ss_pred HHHHHHHHhhccch-----h--H-------HHHHHhhhHHHHhhhhhhhHHHHHhhhhccccc-----cccchhhhhhhH
Q 015871 119 VGQLEEELRRSDSE-----C--L-------LLMEELQSKEERLRNSALHIKKLEESISSSALE-----SQCEIESLKIDM 179 (399)
Q Consensus 119 V~~l~eEL~rS~Se-----~--~-------lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLe-----SQcEIESmKLD~ 179 (399)
...+..++..-++. . . -|-.++..-+.++....-.++-||..+.+.||- +..-|=.|+-.+
T Consensus 477 ~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP 556 (722)
T PF05557_consen 477 NETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNP 556 (722)
T ss_dssp -----------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-H
T ss_pred ccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCc
Confidence 11222222211111 1 1 133455566666666666777777777776654 344555566666
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHH-------------------HHHHHhHhHHHHHHHHHHhhHHHHHhhhhccc
Q 015871 180 IALEQTCVEAKKVHKENVQEKARMNSLIK-------------------ELEVRTQDSQEIIECLDKENKELKEKLDSYET 240 (399)
Q Consensus 180 ~aLEQ~lfdA~k~q~et~~ek~~m~~~i~-------------------Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~ 240 (399)
++--+.. .++.-+---.||..+...+. -.+..+.+.++-|..++|.+.-|++-|...-.
T Consensus 557 ~~~~~~~--k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~ 634 (722)
T PF05557_consen 557 TSKAEQI--KKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQ 634 (722)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655422 22222222234444444442 22334667788888899999999998887655
Q ss_pred hhHHHHHHhHHH
Q 015871 241 NGRVFCQKIEEW 252 (399)
Q Consensus 241 n~r~~~q~~~e~ 252 (399)
..|..|.++=+|
T Consensus 635 eFr~av~~llGy 646 (722)
T PF05557_consen 635 EFREAVYSLLGY 646 (722)
T ss_dssp HHHHHHHHHHSE
T ss_pred HHHHHHHHHhcc
Confidence 555555555444
No 30
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=73.48 E-value=98 Score=30.52 Aligned_cols=132 Identities=23% Similarity=0.266 Sum_probs=89.3
Q ss_pred hhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhh
Q 015871 96 YSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESL 175 (399)
Q Consensus 96 n~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESm 175 (399)
|-|+.+-..++.=......+..+++++.-++..++.....|..|.+....|+.++.....||| ++-=+-|..--.+
T Consensus 15 ~~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE----~LCRELQk~Nk~l 90 (309)
T PF09728_consen 15 NKLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLE----SLCRELQKQNKKL 90 (309)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 344444444444444556778889999999999999999999999999999999999999999 6665666655555
Q ss_pred hhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871 176 KIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 176 KLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
|=+...+ +..-...--.=.++..+.|.+.+.++.+-...-.-+..+|..|++||..
T Consensus 91 keE~~~~------~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~ 146 (309)
T PF09728_consen 91 KEESKRR------AREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKS 146 (309)
T ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 5322222 1111111222234556667777777666555555677888888888765
No 31
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=72.49 E-value=18 Score=27.24 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=48.1
Q ss_pred HHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhh
Q 015871 46 IKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHV 102 (399)
Q Consensus 46 i~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHi 102 (399)
.+|..-+.-|+...+..-+.||+.||..+-.-..+.+-|..++..-..++..|..-+
T Consensus 7 ~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 7 ERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467788888999999999999999999999999999999988877777766665433
No 32
>PRK01156 chromosome segregation protein; Provisional
Probab=70.90 E-value=1.6e+02 Score=31.87 Aligned_cols=59 Identities=5% Similarity=0.161 Sum_probs=26.7
Q ss_pred hhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHH
Q 015871 100 EHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLE 158 (399)
Q Consensus 100 EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLE 158 (399)
.++-.++..+....+++.++..+..++..-....=-+-.++.....++......++.|+
T Consensus 180 ~ei~~le~~~~~l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~ 238 (895)
T PRK01156 180 AEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLK 238 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443333444444444444444444444444
No 33
>PRK04863 mukB cell division protein MukB; Provisional
Probab=67.29 E-value=2.8e+02 Score=33.28 Aligned_cols=77 Identities=21% Similarity=0.300 Sum_probs=41.3
Q ss_pred chHHHHHhHHHHHhhHHHHHH-------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 015871 303 NLKEKIKGMSLQICEYELLVK-------QLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQR 375 (399)
Q Consensus 303 ~lk~kme~Ms~qi~eyE~Lvk-------QLKeELREEKLKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQASLQR 375 (399)
.++.+.+.++.+|.+|+-+-- .|+. |+++=--.-+...++.+-|. -+|+.|..-+.-..+.. .|
T Consensus 583 ~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~-L~eq~g~~~~~~~~v~~~mq-------~~~~~~~~~~~~~~~~~-~~ 653 (1486)
T PRK04863 583 ALRQQLEQLQARIQRLAARAPAWLAAQDALAR-LREQSGEEFEDSQDVTEYMQ-------QLLERERELTVERDELA-AR 653 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHhhHHHHHH-HHHhcchhhcCHHHHHHHHH-------HHHHHHHHHHHHHHHHH-HH
Confidence 455666666666666654421 2222 44444444445555544443 44666655444443333 47
Q ss_pred HHHHHHHHHhhcc
Q 015871 376 IAELETQIEKGQN 388 (399)
Q Consensus 376 IaELEAQi~ke~~ 388 (399)
|..|+.||.+--.
T Consensus 654 ~~~L~~~i~~l~~ 666 (1486)
T PRK04863 654 KQALDEEIERLSQ 666 (1486)
T ss_pred HHHHHHHHHhhhc
Confidence 8889999975443
No 34
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=66.72 E-value=1.7e+02 Score=30.59 Aligned_cols=287 Identities=21% Similarity=0.291 Sum_probs=160.4
Q ss_pred HHhhhhhhhHhhHHhh----hhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhH-------HHH----
Q 015871 73 ELMNCSQEIDYLQDQL----NARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECL-------LLM---- 137 (399)
Q Consensus 73 ELlNC~QEIDYLqDQL----n~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~-------lLm---- 137 (399)
||.---||+.=++..+ .++|.=.+--.+.+...+......+.|.-+|..+.+.|-.+...|. -+.
T Consensus 131 eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~ 210 (522)
T PF05701_consen 131 ELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAERE 210 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554444443 3578888888899999999999999999999999999987765443 111
Q ss_pred HHhhhHHHHhhhhhhhHHHHHhhhhccc-cccccchhhhhhhHHHHHHHHHHHhh--hhhhh--HHHHHHHHHHHHHHHH
Q 015871 138 EELQSKEERLRNSALHIKKLEESISSSA-LESQCEIESLKIDMIALEQTCVEAKK--VHKEN--VQEKARMNSLIKELEV 212 (399)
Q Consensus 138 qEle~kE~ELq~Sal~IeKLEESiSS~t-LeSQcEIESmKLD~~aLEQ~lfdA~k--~q~et--~~ek~~m~~~i~Elq~ 212 (399)
+...+-+.+|..+--.++.|...+++.. |++ ....-.-|+..|-.-|+.++. ...+. -.....+...+.-...
T Consensus 211 ~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~--kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ 288 (522)
T PF05701_consen 211 QDAEEWEKELEEAEEELEELKEELEAAKDLES--KLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKK 288 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHH
Confidence 3334445556666666667766663321 222 222233455566666666654 11111 1112223333555555
Q ss_pred HhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhhhhhcchhhhhhhhhhhhcccccccccchhhhhHHHHH
Q 015871 213 RTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLS 292 (399)
Q Consensus 213 q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~~e~lE~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~~ 292 (399)
.|.+|...+.....+...|+.....-..........+..-.++.......+++...++. .+-.
T Consensus 289 ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~-----------------~~r~ 351 (522)
T PF05701_consen 289 ELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELN-----------------KTRS 351 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHH-----------------HHHH
Confidence 55566666555555555544333322111111112222222223333333333333332 2244
Q ss_pred HHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 015871 293 KLALVLGPDANLKEKIKGMSLQICEYELLVKQLKE---ELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIE 369 (399)
Q Consensus 293 kL~~~~~~d~~lk~kme~Ms~qi~eyE~LvkQLKe---ELREEKLKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIE 369 (399)
.|..+-....+.++.|.+|...+++.-.-.++.|. ..+++-.++|.+++.....+...=-.+.-.+.+-=.=|+. |
T Consensus 352 eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKas-E 430 (522)
T PF05701_consen 352 ELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKAS-E 430 (522)
T ss_pred HHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 55555556777778899999999988887776664 4567788899999988877754433333344333223343 4
Q ss_pred HHHHHHHHHH
Q 015871 370 QASLQRIAEL 379 (399)
Q Consensus 370 QASLQRIaEL 379 (399)
..++..|.-|
T Consensus 431 a~Ala~ik~l 440 (522)
T PF05701_consen 431 ALALAEIKAL 440 (522)
T ss_pred HHHHHHHHHh
Confidence 5566666554
No 35
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=65.71 E-value=2.1e+02 Score=31.22 Aligned_cols=156 Identities=22% Similarity=0.292 Sum_probs=105.4
Q ss_pred hhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccch--------------------------
Q 015871 79 QEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSE-------------------------- 132 (399)
Q Consensus 79 QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se-------------------------- 132 (399)
+|--++.+|.+-=|.=|-.|..||.-.-.+|...-+-+..-+...+.+--|+-+
T Consensus 258 ~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~ 337 (531)
T PF15450_consen 258 SEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLAGKLAQQETQS 337 (531)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhh
Confidence 455788888888888888999888776666655444444444333333322211
Q ss_pred hHHHHHHhhh-HHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHH---HH
Q 015871 133 CLLLMEELQS-KEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSL---IK 208 (399)
Q Consensus 133 ~~lLmqEle~-kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~---i~ 208 (399)
.+=++||... .+.-...++-.|..|..-|+.+.-. +++|--+|...|-+|+. .....+++-|+++ -.
T Consensus 338 ~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~r-------ld~qEqtL~~rL~e~~~--e~~~~~r~~lekl~~~q~ 408 (531)
T PF15450_consen 338 ELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWR-------LDLQEQTLNLRLSEAKN--EWESDERKSLEKLDQWQN 408 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 2233444322 3444556666777777777666543 77888999999999988 4455556555554 56
Q ss_pred HHHHHhHhHHHHHHHHHHhhHHHHHhhhh--ccchhH
Q 015871 209 ELEVRTQDSQEIIECLDKENKELKEKLDS--YETNGR 243 (399)
Q Consensus 209 Elq~q~q~Aqe~i~~L~keNkeL~ekl~~--se~n~r 243 (399)
+.+..+.+-++-|+.|-.++.++..|++. ++.|.|
T Consensus 409 e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~k 445 (531)
T PF15450_consen 409 EMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTK 445 (531)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 89999999999999999999999888875 444444
No 36
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=64.55 E-value=1.2e+02 Score=28.26 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=42.9
Q ss_pred HHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHh
Q 015871 137 MEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQD 216 (399)
Q Consensus 137 mqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~ 216 (399)
-.|+..-...+...+....+|+ -++..++.++..+...+.++.+.....-.+.+.+.+-+.+.-...-+
T Consensus 53 e~el~~lr~~id~~~~eka~l~-----------~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~ 121 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLE-----------LEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVD 121 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHh-----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhH
Confidence 4455555555555555555555 35566777777777777777555554444444444444444444444
Q ss_pred HHHHHHHHHHh
Q 015871 217 SQEIIECLDKE 227 (399)
Q Consensus 217 Aqe~i~~L~ke 227 (399)
.+.-|..|..+
T Consensus 122 le~~i~~L~eE 132 (312)
T PF00038_consen 122 LENQIQSLKEE 132 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 37
>PRK11637 AmiB activator; Provisional
Probab=64.38 E-value=1.6e+02 Score=29.43 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871 204 NSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 204 ~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
...|...+.++...+.-|..++.+..+++.++..
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 38
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=63.93 E-value=3.6e+02 Score=33.39 Aligned_cols=71 Identities=24% Similarity=0.201 Sum_probs=33.9
Q ss_pred cchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhH
Q 015871 170 CEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGR 243 (399)
Q Consensus 170 cEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r 243 (399)
-.|++.+--++.||..+-+=. .+...=.+.....++..+-++-++...|..+.-+++.+.......+.++.
T Consensus 958 a~ie~~~~k~tslE~~ls~L~---~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~ 1028 (1822)
T KOG4674|consen 958 AKIESLHKKITSLEEELSELE---KEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIE 1028 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555443321 22222223334444455555555666666666666655555544444433
No 39
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=63.62 E-value=11 Score=28.22 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=28.2
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhh
Q 015871 56 LSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLN 89 (399)
Q Consensus 56 lSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn 89 (399)
+-.+...|++-++..+..|..|.+=||||+++|.
T Consensus 23 m~~~~~~~~k~~~~a~~~l~es~~ki~~L~~~L~ 56 (57)
T smart00742 23 MRKLTSNDRKVLSEAQSMLRESNQKLDLLKEELE 56 (57)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445778999999999999999999999884
No 40
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=62.92 E-value=1.3e+02 Score=28.06 Aligned_cols=55 Identities=25% Similarity=0.418 Sum_probs=39.8
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHH
Q 015871 306 EKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEE 360 (399)
Q Consensus 306 ~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTglLEE 360 (399)
..+..+-.++..++.-|..+...+..+.-.-...-.+|-.|+++||.+|+..+.+
T Consensus 230 ~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e 284 (312)
T PF00038_consen 230 AELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 3444555566667777777777777777777777788888888888888877643
No 41
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=62.43 E-value=1.1e+02 Score=27.00 Aligned_cols=71 Identities=31% Similarity=0.386 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhcccc-------chHHHHHHHHHHHhhccch
Q 015871 62 EDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDME-------ILQDKVGQLEEELRRSDSE 132 (399)
Q Consensus 62 eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e-------~l~e~V~~l~eEL~rS~Se 132 (399)
.=...+..||.+....-+||..|+..+.-=..+|--+.+-++...-++.+.+ .|..+|..|.+||-+++..
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~ 95 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKK 95 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3345677788888888888888887777777777777777766666665544 5888999999999888765
No 42
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=61.25 E-value=3.3e+02 Score=32.04 Aligned_cols=90 Identities=22% Similarity=0.394 Sum_probs=62.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchh
Q 015871 54 KSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSEC 133 (399)
Q Consensus 54 ~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~ 133 (399)
+.+..-+.+-++.|.++++.+.+|+-.|-=+.-++..-..||+.|.-- . |.+..+...+++.++.+.+
T Consensus 678 ~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~--~-e~~~~~~~~~~~l~~ei~~--------- 745 (1074)
T KOG0250|consen 678 LELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNT--A-EEKQVDISKLEDLAREIKK--------- 745 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--h-hhhhcchhhhHHHHHHHHH---------
Confidence 445555566678899999999999999988888888888999888643 2 6777777777766655443
Q ss_pred HHHHHHhhhHHHHhhhhhhhHHHH
Q 015871 134 LLLMEELQSKEERLRNSALHIKKL 157 (399)
Q Consensus 134 ~lLmqEle~kE~ELq~Sal~IeKL 157 (399)
.+++++.++-.+++.-..++.+
T Consensus 746 --~~~eIe~~~~~~e~l~~e~e~~ 767 (1074)
T KOG0250|consen 746 --KEKEIEEKEAPLEKLKEELEHI 767 (1074)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666655555444444433
No 43
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=60.42 E-value=4.2e+02 Score=32.98 Aligned_cols=66 Identities=29% Similarity=0.399 Sum_probs=31.9
Q ss_pred HHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhc
Q 015871 45 LIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLV 110 (399)
Q Consensus 45 li~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~ 110 (399)
.+|+|+-.-+.+-++..+-+..+..|...|.+=+-|+-=|+-++.-=+.+++-+.--|..|+=.+.
T Consensus 1042 ~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~ 1107 (1930)
T KOG0161|consen 1042 AKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIK 1107 (1930)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555444443333333344444344444443333
No 44
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=58.44 E-value=44 Score=29.08 Aligned_cols=6 Identities=100% Similarity=1.237 Sum_probs=5.3
Q ss_pred HHHHHH
Q 015871 375 RIAELE 380 (399)
Q Consensus 375 RIaELE 380 (399)
||||||
T Consensus 134 riaEle 139 (139)
T PF13935_consen 134 RIAELE 139 (139)
T ss_pred HHHhcC
Confidence 999986
No 45
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=58.18 E-value=66 Score=26.01 Aligned_cols=75 Identities=28% Similarity=0.423 Sum_probs=51.2
Q ss_pred CCCCChHHHHHhHHHHHHHHhhhhhhhhhhhhhhHHHHHHHh---hhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhh
Q 015871 10 ESVFDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLEL---HAKSLSEAHNEDKKHIQKLERELMNCSQEIDYL 84 (399)
Q Consensus 10 ~~~~d~eellqi~trc~~lrkek~~lr~sqsqs~eli~rleL---~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYL 84 (399)
....|+++++.+-...+.+..+.+-||.-+-.-=.-|..+-- ++..+-....+=+..|..+|.++..-..+++++
T Consensus 23 ~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 23 GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667899999999999999999999998876655444444433 233333344444566677777766666666554
No 46
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=57.89 E-value=2.8e+02 Score=30.19 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=23.1
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHH
Q 015871 184 QTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQE 219 (399)
Q Consensus 184 Q~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe 219 (399)
.-|-+|...+++|..+.++.+=-...+..++.+|..
T Consensus 311 ~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l 346 (546)
T PF07888_consen 311 KELSDAVNVRDRTMAELHQARLEAAQLKLQLADASL 346 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 345566777777777777776555666666655544
No 47
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=57.43 E-value=4.1e+02 Score=31.93 Aligned_cols=124 Identities=31% Similarity=0.354 Sum_probs=80.2
Q ss_pred hhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHH---HHHHHhhccchhHHHH
Q 015871 61 NEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQ---LEEELRRSDSECLLLM 137 (399)
Q Consensus 61 ~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~---l~eEL~rS~Se~~lLm 137 (399)
.+-.+.++.||-.|.|=.|++.-+-+|.-+.+ .+.+-.. .|++.+.. -+.||.| .+--++.
T Consensus 430 ~e~~~~~~~le~~l~~~~~~~~~~~~~~~~~~----~~~~~~k----------eL~e~i~~lk~~~~el~~--~q~~l~q 493 (1317)
T KOG0612|consen 430 QEIHKTLQILEQSLVNEMQEKEKLDEKCQAVA----ELEEMDK----------ELEETIEKLKSEESELQR--EQKALLQ 493 (1317)
T ss_pred hccccchhhcccchhhHHHHhhhHHHHHHHHh----hHHHHHH----------HHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 35567889999999999999987766655554 2211111 22322222 2445555 4555666
Q ss_pred HHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhH
Q 015871 138 EELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDS 217 (399)
Q Consensus 138 qEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~A 217 (399)
++.--.++.+....-.+.+|+ -.+-.++--+=+|++.-+...+.+++...+-+++..+..++
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~------------------~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~ 555 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLE------------------ALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDM 555 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Confidence 776666666666555555655 34455666677778888888888888888888888777776
Q ss_pred H
Q 015871 218 Q 218 (399)
Q Consensus 218 q 218 (399)
.
T Consensus 556 ~ 556 (1317)
T KOG0612|consen 556 R 556 (1317)
T ss_pred h
Confidence 6
No 48
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=56.36 E-value=4.1e+02 Score=31.54 Aligned_cols=201 Identities=26% Similarity=0.322 Sum_probs=121.2
Q ss_pred HHHH-HhHHHHHHHHhhhhhhhhhhhhhhHHHHHHHhhhhhh-----hhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhh
Q 015871 16 EELL-QIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSL-----SEAHNEDKKHIQKLERELMNCSQEIDYLQDQLN 89 (399)
Q Consensus 16 eell-qi~trc~~lrkek~~lr~sqsqs~eli~rleL~~~sl-----Sea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn 89 (399)
.+|| -|..|-++|-.||.-|+.-| +|+=..+++ +.-+.|-..-+..||----+-.++=+-+.|+++
T Consensus 190 ~ell~yieerLreLEeEKeeL~~Yq--------kldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~ 261 (1200)
T KOG0964|consen 190 NELLKYIEERLRELEEEKEELEKYQ--------KLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALD 261 (1200)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH--------HHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444 37778888888887776554 333333332 233444455566676666666777777889999
Q ss_pred hhhhhhhhhhhhhhhhhhhhccccc------------------hHHHHHHHHHHHhhccch---hHHHHHHhhhHHHHhh
Q 015871 90 ARNEEVYSLSEHVHSLELKLVDMEI------------------LQDKVGQLEEELRRSDSE---CLLLMEELQSKEERLR 148 (399)
Q Consensus 90 ~Rn~Evn~l~EHih~LElKL~~~e~------------------l~e~V~~l~eEL~rS~Se---~~lLmqEle~kE~ELq 148 (399)
-|..++..++.-|..||-+|+.+.. |+-++..|.+++-++.-+ -+-.++++.++..+-+
T Consensus 262 ~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~ 341 (1200)
T KOG0964|consen 262 KVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKK 341 (1200)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887654 223345555555544332 3445677777666655
Q ss_pred hhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHH-------------HHHHHHHHHHHHhH
Q 015871 149 NSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKA-------------RMNSLIKELEVRTQ 215 (399)
Q Consensus 149 ~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~-------------~m~~~i~Elq~q~q 215 (399)
.-..-|+..= ++++ -+=.-.+.+++-|+|..-+---.|+..+|+.. ++++.|.....+..
T Consensus 342 ~EL~~I~Pky---~~l~----~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~ 414 (1200)
T KOG0964|consen 342 DELSKIEPKY---NSLV----DEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQEN 414 (1200)
T ss_pred HHHHHhhhHH---HHHH----hHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 5554454433 3332 12345689999999976665556666655432 33444444444444
Q ss_pred hHHHHHHHHHHhhHHH
Q 015871 216 DSQEIIECLDKENKEL 231 (399)
Q Consensus 216 ~Aqe~i~~L~keNkeL 231 (399)
--|.-|..++.+.++.
T Consensus 415 ~lq~e~~~~e~~l~~~ 430 (1200)
T KOG0964|consen 415 ILQKEIEDLESELKEK 430 (1200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455554444443
No 49
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=55.32 E-value=3.6e+02 Score=30.66 Aligned_cols=303 Identities=23% Similarity=0.320 Sum_probs=172.1
Q ss_pred HHhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhh----HhhHHhhhhhhhhhhhhhhhhh
Q 015871 28 LRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEI----DYLQDQLNARNEEVYSLSEHVH 103 (399)
Q Consensus 28 lrkek~~lr~sqsqs~eli~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEI----DYLqDQLn~Rn~Evn~l~EHih 103 (399)
++.=+.-|.+||-+--+|-..-.+..-.|.+|-.+--+-.+.|+. .-.|-|+- .-|.-.|.+-...+
T Consensus 256 ~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~-~K~slq~~~~tq~~le~~lq~~~k~~-------- 326 (786)
T PF05483_consen 256 IKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELED-IKQSLQESESTQKALEEDLQQATKTL-------- 326 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 444455677777777666666666666777776665555555542 22333432 11222222221111
Q ss_pred hhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhh----hhHHHHHhhhhccccccc---cchhhhh
Q 015871 104 SLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSA----LHIKKLEESISSSALESQ---CEIESLK 176 (399)
Q Consensus 104 ~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sa----l~IeKLEESiSS~tLeSQ---cEIESmK 176 (399)
..+-++-..-.+|+.+-.-.|-..+.+++++=-.|+.+. -..+++|.-++.+|+|-| .++|.|.
T Consensus 327 ---------~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmt 397 (786)
T PF05483_consen 327 ---------IQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMT 397 (786)
T ss_pred ---------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHH
Confidence 122222233456677777778888888888877777654 357888999999998865 5777665
Q ss_pred h-------hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHh
Q 015871 177 I-------DMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKI 249 (399)
Q Consensus 177 L-------D~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~ 249 (399)
- .+-.|--.|-+.. .-++++.....+..+|+..-++--..+...+++...|...|.+.-.|-..+...+
T Consensus 398 k~k~~ke~eleeL~~~L~e~q----kll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQV 473 (786)
T PF05483_consen 398 KQKNNKEVELEELKKILAEKQ----KLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQV 473 (786)
T ss_pred HHhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2 1222222222222 3467778889999999999999999999999999999999988766666665444
Q ss_pred HH---HHhhh--hhcchhhhhhhhhhhhcccccccccchhhhhHHHHHHHHHhhCCC-CchHHHHHhHHHHHhhHHHHHH
Q 015871 250 EE---WMEKE--DRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPD-ANLKEKIKGMSLQICEYELLVK 323 (399)
Q Consensus 250 ~e---~lE~e--d~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~~kL~~~~~~d-~~lk~kme~Ms~qi~eyE~Lvk 323 (399)
++ .++++ -+..|...+.---+++. .-|.+ |...+..+--. ..| .+-+.+-++|-+||...+.--.
T Consensus 474 eeLKtELE~EkLKN~ELt~~~nkLslEkk-------~laQE-~~~~~~elKk~-qedi~~~k~qee~~~kqie~Lee~~~ 544 (786)
T PF05483_consen 474 EELKTELEQEKLKNTELTVNCNKLSLEKK-------QLAQE-TSDMALELKKQ-QEDINNSKKQEEKMLKQIENLEETNT 544 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23321 12223322322223332 12222 22222111111 011 1225667789999998888777
Q ss_pred HHHHHHHHHhhhhhhH--------------HHHHHHHHHHHHHHHhhhHHHHH
Q 015871 324 QLKEELRAEKFKAKEE--------------AEDLAQEMAELRYQMTSLLEEEC 362 (399)
Q Consensus 324 QLKeELREEKLKAKEE--------------AEDLtQEMAELRYQmTglLEEEc 362 (399)
||+.+|.--+.+++.- |.-.-=||....-||. .||..|
T Consensus 545 ~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k-~lenk~ 596 (786)
T PF05483_consen 545 QLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMK-ILENKC 596 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHH-HHHHHH
Confidence 7777765433333222 2223345555555554 456666
No 50
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=54.67 E-value=15 Score=35.01 Aligned_cols=41 Identities=29% Similarity=0.397 Sum_probs=36.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhh
Q 015871 55 SLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYS 97 (399)
Q Consensus 55 slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~ 97 (399)
.++||.+==++-|--.++=|.-|--.+||||||++- .|||.
T Consensus 125 ~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTT--tEVN~ 165 (187)
T KOG3313|consen 125 DLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTT--TEVNM 165 (187)
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcee--eeeee
Confidence 478898888999999999999999999999999874 56664
No 51
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=54.18 E-value=2.3e+02 Score=28.01 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871 178 DMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 178 D~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
|+-.++..+....|-++....+++.+.+=..-....-..-+..-.-|.++|+.+++....
T Consensus 37 e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~ 96 (309)
T PF09728_consen 37 EMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKR 96 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666655555555554433322233333333444455667777655444
No 52
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=53.58 E-value=5e+02 Score=31.69 Aligned_cols=208 Identities=17% Similarity=0.207 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhhhhhhhH---HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhh
Q 015871 179 MIALEQTCVEAKKVHKENV---QEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEK 255 (399)
Q Consensus 179 ~~aLEQ~lfdA~k~q~et~---~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~~e~lE~ 255 (399)
.+.-.+|+--|+-.+..-. .+-.+....|.+-..+--+|+.-.+-...+-+--+.+.+.++.-.+.++|.+.++|.+
T Consensus 1407 ~t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~ 1486 (1758)
T KOG0994|consen 1407 VTRAGGALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQ 1486 (1758)
T ss_pred hcccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455666666665554433 3445566677888888888888888888887788888888888888999999999999
Q ss_pred hhhcchhhhhhhhh-hhhcccccccccchhhhhHHHHHHHHH------hh---CCCCchHHHHHhHHHHHhhHHHHHHHH
Q 015871 256 EDRKQLDIQSLVSE-LERNFTVSKETCFCGKVFGALLSKLAL------VL---GPDANLKEKIKGMSLQICEYELLVKQL 325 (399)
Q Consensus 256 ed~~~l~~q~~~~~-l~~~~~~s~~~~~c~~~f~~l~~kL~~------~~---~~d~~lk~kme~Ms~qi~eyE~LvkQL 325 (399)
++.++-.++-+..+ |.-.++.+.+.-. -+-++|-..++- ++ .+|..--+.+..-|..-...-..|++-
T Consensus 1487 ~~adp~si~~vA~~vL~l~lp~tpeqi~--~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ 1564 (1758)
T KOG0994|consen 1487 PDADPDSIEEVAEEVLALELPLTPEQIQ--QLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQ 1564 (1758)
T ss_pred CCCCHHHHHHHHHHHHhccCCCCHHHHH--HHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99888776655433 3333333322111 022333222221 11 123332334444455555555555555
Q ss_pred HHHHHH---HhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcc
Q 015871 326 KEELRA---EKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIE---QASLQRIAELETQIEKGQN 388 (399)
Q Consensus 326 KeELRE---EKLKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIE---QASLQRIaELEAQi~ke~~ 388 (399)
-++.++ +--+|.-+|.|..|+...--.+..-+|+.=-.+-+=.| +++-||+.+||+-++.-+.
T Consensus 1565 ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~ 1633 (1758)
T KOG0994|consen 1565 AEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKH 1633 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443 23344455555555433322222223322222222223 5677999999998865443
No 53
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=53.54 E-value=56 Score=24.78 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=29.9
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 015871 310 GMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMT 355 (399)
Q Consensus 310 ~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmT 355 (399)
.|+.|+.+.-.+++.||+.+|.+ +.|++-||--|.
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q-----------~kE~~~LRntI~ 39 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQ-----------IKETRFLRNTIM 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 57889999999999999999875 678999997663
No 54
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=52.94 E-value=23 Score=27.19 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=27.9
Q ss_pred hhhhHH-HHHHHHHHhhhhhhhHhhHHhhhhhhhh
Q 015871 61 NEDKKH-IQKLERELMNCSQEIDYLQDQLNARNEE 94 (399)
Q Consensus 61 ~eDk~~-Iq~LEkELlNC~QEIDYLqDQLn~Rn~E 94 (399)
..|++. ....+.+|..|.+.|+||+.+|.-.+..
T Consensus 28 ~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 28 STDKKKVLSEAESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456655 8889999999999999999999765543
No 55
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.21 E-value=1.7e+02 Score=32.41 Aligned_cols=76 Identities=18% Similarity=0.345 Sum_probs=49.6
Q ss_pred ccccccchhhhhhhHH--HHHHHHHHHhhhhhhhH--HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccc
Q 015871 165 ALESQCEIESLKIDMI--ALEQTCVEAKKVHKENV--QEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYET 240 (399)
Q Consensus 165 tLeSQcEIESmKLD~~--aLEQ~lfdA~k~q~et~--~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~ 240 (399)
|+-+-|++=++++.++ .+++.|-+....+-+.+ .-.+++...++.|+.+-..=-.-++.|--+.-+|=.+++++.-
T Consensus 189 ~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~E 268 (660)
T KOG4302|consen 189 EIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDE 268 (660)
T ss_pred HHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 4456788888888854 59999998876444333 2245677777777665443333366666777777777777643
No 56
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=50.83 E-value=95 Score=25.07 Aligned_cols=34 Identities=41% Similarity=0.545 Sum_probs=29.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 015871 205 SLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 238 (399)
Q Consensus 205 ~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~s 238 (399)
.++..|+.+++.|=.+|..|..+|.+|+++-...
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4678899999999999999999999999975554
No 57
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=48.36 E-value=52 Score=35.14 Aligned_cols=59 Identities=32% Similarity=0.458 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHH
Q 015871 61 NEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLE 123 (399)
Q Consensus 61 ~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~ 123 (399)
.+.-.||-.||++..-=.-|+++|+.. ..-|..|-|-+|+|+-||.-++.+..++..++
T Consensus 253 ~~ql~~i~~LE~en~~l~~Elk~Lr~~----~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq 311 (722)
T PF05557_consen 253 KEQLAHIRELEKENRRLREELKHLRQS----QENVELLEEEKRSLQRKLERLEELEEELAELQ 311 (722)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355668888888888888888888763 33366789999999999999988877766653
No 58
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=47.67 E-value=2.4e+02 Score=26.32 Aligned_cols=122 Identities=26% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhh----
Q 015871 116 QDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKK---- 191 (399)
Q Consensus 116 ~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k---- 191 (399)
.++|+.|++.|++|.-..--+=+.+.-++.+|.+.-..+.+|..-+..=+|. |.+.+-=-+..+++.+-++.+
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~---eReeL~~kL~~~~~~l~~~~~ki~~ 143 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLA---EREELQRKLSQLEQKLQEKEKKIQE 143 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch---hHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccc
Q 015871 192 VHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYET 240 (399)
Q Consensus 192 ~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~ 240 (399)
.....--.+.-....+.-......+|+..+..|..++..|.-++.--++
T Consensus 144 Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 144 LEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 59
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=46.41 E-value=67 Score=30.71 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=48.5
Q ss_pred CCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHH
Q 015871 299 GPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEE 360 (399)
Q Consensus 299 ~~d~~lk~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTglLEE 360 (399)
++++++++.|..+.+.+...+.++..++..|+.++. +-..+..|.+=|-+.-+.+.+|.+.
T Consensus 15 ~~~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~-~~~~lk~l~~~~~~~~~~l~hl~~n 75 (243)
T PF07160_consen 15 GQDPNLKDTLSKIDQEVSAIEELLNDIEQELQREEE-ALPKLKELMESSEEQQKKLQHLKEN 75 (243)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999984 6666666666666665666666554
No 60
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=46.05 E-value=3.9e+02 Score=29.52 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=35.9
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH---HhhHHHHHhhhhccchhHHHH
Q 015871 172 IESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLD---KENKELKEKLDSYETNGRVFC 246 (399)
Q Consensus 172 IESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~---keNkeL~ekl~~se~n~r~~~ 246 (399)
|..++--+..|.+.+-+++.--.+...+....-..+..+.-++-.+....---. .++++|...+.--..|+|+||
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~C 320 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFC 320 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEE
Confidence 334444444444444444333333333333333333333333333333333223 667777777777777888885
No 61
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=45.94 E-value=1.1e+02 Score=27.50 Aligned_cols=82 Identities=26% Similarity=0.355 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHH
Q 015871 65 KHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKE 144 (399)
Q Consensus 65 ~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE 144 (399)
+||..||+||-.--.+--|+ |.+.|=+-.....|.+++..+..+|.+...+=-.|..|-+.-.
T Consensus 24 ~~v~~LEreLe~~q~~~e~~-----------------~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 24 DHVESLERELEMSQENKECL-----------------ILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888886644443333 2333444445555666666666666666666666666666666
Q ss_pred HHhhhhhhhHHHHHhhhhc
Q 015871 145 ERLRNSALHIKKLEESISS 163 (399)
Q Consensus 145 ~ELq~Sal~IeKLEESiSS 163 (399)
.+||+---.|.-||-+.+|
T Consensus 87 k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 87 KELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 6777777777777754444
No 62
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=45.77 E-value=4.1e+02 Score=28.44 Aligned_cols=132 Identities=15% Similarity=0.213 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhhhhhcc
Q 015871 181 ALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQ 260 (399)
Q Consensus 181 aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~~e~lE~ed~~~ 260 (399)
+.+...=.-.+.-+.++.+-+.|+..+.-+...+..-.+-|+.++.+|.-|...- .|-+.++...+.-+..=+
T Consensus 27 ~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~----~N~k~L~~eL~~Ll~~l~--- 99 (701)
T PF09763_consen 27 ESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQS----ANQKLLLNELENLLDTLS--- 99 (701)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH----HHHHHHHHHHHHHHHhcC---
Confidence 3333333344555788899999999999999999999999999999999886543 466877777776663322
Q ss_pred hhhhhhhhhhhh-cccccccccchhhhhHHHHHHHHHhh----CCCCchHHHHHhHHHHHhhHHHH
Q 015871 261 LDIQSLVSELER-NFTVSKETCFCGKVFGALLSKLALVL----GPDANLKEKIKGMSLQICEYELL 321 (399)
Q Consensus 261 l~~q~~~~~l~~-~~~~s~~~~~c~~~f~~l~~kL~~~~----~~d~~lk~kme~Ms~qi~eyE~L 321 (399)
++. .....|.+ .|+-..+...|..--.+|++.|..+- ..++++ ..|.-...|-..|+.+
T Consensus 100 i~~-~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~-~~M~Av~er~~~~~~~ 163 (701)
T PF09763_consen 100 IPE-EHLEALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGL-GQMRAVKERREEYEKV 163 (701)
T ss_pred CCH-HHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcH-HHHHHHHHHHHHHHHH
Confidence 221 12233333 33333445677653344455444311 112332 3576677777778765
No 63
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=45.76 E-value=4.6e+02 Score=29.01 Aligned_cols=80 Identities=28% Similarity=0.324 Sum_probs=39.4
Q ss_pred chHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHH--HHHH
Q 015871 303 NLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKE-EAEDLAQEMAELRYQMTSLL---EEECKRRACIEQAS--LQRI 376 (399)
Q Consensus 303 ~lk~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKE-EAEDLtQEMAELRYQmTglL---EEEcKRRaCIEQAS--LQRI 376 (399)
.++.+++.....+.++..+..+++ .++++++- ..+++.++...+.-..+.+. ++-=+-|.|+.+.. +-.|
T Consensus 530 ~~~~~~e~l~~~~e~~~~~~~~~~----~~~l~~e~~~le~~~~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~l 605 (908)
T COG0419 530 ELEEKLEKLENLLEELEELKEKLQ----LQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKEL 605 (908)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655553 12222221 24444444444444444444 33334445665555 5555
Q ss_pred HHHHHHHHhh
Q 015871 377 AELETQIEKG 386 (399)
Q Consensus 377 aELEAQi~ke 386 (399)
....++++..
T Consensus 606 ~~~~~~l~~~ 615 (908)
T COG0419 606 EERLSQLEEL 615 (908)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 64
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.89 E-value=3.3e+02 Score=27.16 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHH
Q 015871 181 ALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWM 253 (399)
Q Consensus 181 aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~~e~l 253 (399)
+=+..+=++.+=+...-.+-..|.+.|.+++.+.++.++-|+.+..+.++|..++...+-|++.--..+.+|+
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ra 107 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRA 107 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555556677888888888888888888888888888888888888888887777777776
No 65
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=44.59 E-value=3.4e+02 Score=27.20 Aligned_cols=161 Identities=20% Similarity=0.238 Sum_probs=89.2
Q ss_pred hhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHH
Q 015871 140 LQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQE 219 (399)
Q Consensus 140 le~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe 219 (399)
|---|+..+++-.+--.|.--=+++ ..+|.-+|=.+..||..++...+--.+-+-+-.++..
T Consensus 86 l~evEekyrkAMv~naQLDNek~~l----~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~-------------- 147 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSNAQLDNEKSAL----MYQVDLLKDKLEELEETLAQLQREYREKIRELERQKR-------------- 147 (302)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 3344556677777766666444444 4678999999999999999887655444444444444
Q ss_pred HHHHHHHhhHHHHHhhhhc----cchhHHHHHHhHHHHhhhhhcchhhhhhhhhhhhcccccccccchhhhhHHHHHHHH
Q 015871 220 IIECLDKENKELKEKLDSY----ETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLA 295 (399)
Q Consensus 220 ~i~~L~keNkeL~ekl~~s----e~n~r~~~q~~~e~lE~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~~kL~ 295 (399)
.+++|..+..+|++.+... +.+|-++.- + ..++...+..+ ..+.+.+..|-..-+..|.
T Consensus 148 ~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~---~-------------~~ngd~~~~~~-~~~~~~~~~vs~e~a~~L~ 210 (302)
T PF09738_consen 148 AHDSLREELDELREQLKQRDELIEKHGLVLVP---D-------------ATNGDTSDEPN-NVGHPKRALVSQEAAQLLE 210 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCC---C-------------CCCCccccCcc-ccCCCcccccchhhhhhhc
Confidence 4455555555555555432 112221110 0 01111111100 0001222222123344454
Q ss_pred HhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhh
Q 015871 296 LVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAK 337 (399)
Q Consensus 296 ~~~~~d~~lk~kme~Ms~qi~eyE~LvkQLKeELREEKLKAK 337 (399)
- ++++.|-..+.+++.--.+.-.-|+.||..|-+.+-+.+
T Consensus 211 ~--aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~ 250 (302)
T PF09738_consen 211 S--AGDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQSEGR 250 (302)
T ss_pred c--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4 468888888888888777777789999999976655444
No 66
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.59 E-value=5.7e+02 Score=29.81 Aligned_cols=113 Identities=22% Similarity=0.272 Sum_probs=75.2
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhh
Q 015871 16 EELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEV 95 (399)
Q Consensus 16 eellqi~trc~~lrkek~~lr~sqsqs~eli~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Ev 95 (399)
+++..|-|.-+.++++.| ...-++-..-.+=.--+.+|+.++-+=--++--|-||++.=-.+.
T Consensus 653 e~l~~~~~kyK~lI~~lD-----------------~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELD-----------------YQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HHHHHHHHHHHHHHHHHh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666665555555444 333333332233334456777777777667777888887766666
Q ss_pred hhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHH
Q 015871 96 YSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEE 145 (399)
Q Consensus 96 n~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ 145 (399)
...+-|-.++==-..-.+-.+++.+.++.|-++-.-++|++..+|..|..
T Consensus 716 g~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~ 765 (970)
T KOG0946|consen 716 GIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNA 765 (970)
T ss_pred cccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 66666666553334456677899999999999999999999999966654
No 67
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=43.44 E-value=93 Score=34.91 Aligned_cols=64 Identities=27% Similarity=0.361 Sum_probs=37.6
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHh----HhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHH
Q 015871 187 VEAKKVHKENVQEKARMNSLIKELEVRT----QDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEE 251 (399)
Q Consensus 187 fdA~k~q~et~~ek~~m~~~i~Elq~q~----q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~~e 251 (399)
|..++...|.-..+-.....|+-||-.+ -.-|.+.+.|+||||+|+ ++..+..|.++-..+++.
T Consensus 215 ~~~~~ts~E~~K~~vs~~e~i~~LQeE~l~tQ~kYQreLErlEKENkeLr-~lll~kd~k~i~~kklKk 282 (980)
T KOG0447|consen 215 IQEESTSYEQQKRKVSDKEKIDQLQEELLHTQLKYQRILERLEKENKELR-KLVLQKDDKGIHHRKLKK 282 (980)
T ss_pred HhhccCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHhhccchhhHHHHHHH
Confidence 3344444444333444444444444322 135789999999999999 777777776655444443
No 68
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.11 E-value=5e+02 Score=28.74 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=58.3
Q ss_pred hccchhHH-----HHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHH
Q 015871 128 RSDSECLL-----LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKAR 202 (399)
Q Consensus 128 rS~Se~~l-----LmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~ 202 (399)
.+.+++|. |=.|++.||.|++.-.-.+.-|--.|-.=. =|--+|+-|-.+-..|.+-+-++.+ +.++
T Consensus 286 ~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~-iS~~dve~mn~Er~~l~r~l~~i~~-------~~d~ 357 (581)
T KOG0995|consen 286 KSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQG-ISGEDVERMNLERNKLKRELNKIQS-------ELDR 357 (581)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 35555553 234555566555554444444443332111 1345788999999999998877764 5667
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhh
Q 015871 203 MNSLIKELEVRTQDSQEIIECLDKENKELKEKL 235 (399)
Q Consensus 203 m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl 235 (399)
+...+|++..+.++--+-|+.+--.-..|..++
T Consensus 358 l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i 390 (581)
T KOG0995|consen 358 LSKEVWELKLEIEDFFKELEKKFIDLNSLIRRI 390 (581)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788877776665555444444444444433
No 69
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=42.88 E-value=5.3e+02 Score=28.98 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 015871 198 QEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 238 (399)
Q Consensus 198 ~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~s 238 (399)
.||..+-.-+++.|.++.-|+.........+-.|.+.+++-
T Consensus 279 ~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL 319 (717)
T PF09730_consen 279 REKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDAL 319 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888999999999999999999998888888888887774
No 70
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.03 E-value=34 Score=33.43 Aligned_cols=86 Identities=22% Similarity=0.245 Sum_probs=66.2
Q ss_pred ccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHH
Q 015871 169 QCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQK 248 (399)
Q Consensus 169 QcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~ 248 (399)
-++|+-++--+..+++.+-.|..--.+.-.+-+.++..|..|+.+..++..-...|..+......++..+.+=+..+...
T Consensus 213 ~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 213 NKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 34666777777777888888888777788888888889999999999999889999999988888998875544444444
Q ss_pred hHHHHh
Q 015871 249 IEEWME 254 (399)
Q Consensus 249 ~~e~lE 254 (399)
...|-+
T Consensus 293 ~~RW~~ 298 (344)
T PF12777_consen 293 KERWSE 298 (344)
T ss_dssp HHCCHC
T ss_pred hhhHHH
Confidence 455553
No 71
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=40.85 E-value=56 Score=25.78 Aligned_cols=40 Identities=30% Similarity=0.395 Sum_probs=33.8
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHH
Q 015871 207 IKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFC 246 (399)
Q Consensus 207 i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~ 246 (399)
|.|++..+....-.|..+.+||.++++-+..-+.|.+.+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888999999999999999888888877553
No 72
>PRK09039 hypothetical protein; Validated
Probab=40.74 E-value=3.8e+02 Score=26.71 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=60.4
Q ss_pred hHHHHHHhhhHHHHhhhhhhhHHHHHhhhh---ccccccccchhhhhhhHHHHHHHHHHHhhhhhhh-------HHHHHH
Q 015871 133 CLLLMEELQSKEERLRNSALHIKKLEESIS---SSALESQCEIESLKIDMIALEQTCVEAKKVHKEN-------VQEKAR 202 (399)
Q Consensus 133 ~~lLmqEle~kE~ELq~Sal~IeKLEESiS---S~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et-------~~ek~~ 202 (399)
+|+|=+++..++.+|......|.-|=+.++ +-+.+.|.+|..+..++.+++..-=.....-... -..-+.
T Consensus 41 q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~ 120 (343)
T PRK09039 41 QFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGE 120 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHH
Confidence 678888999888888776666655433332 2336778888888888777776544444321111 111222
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871 203 MNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 203 m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
+..-+.+.+....+++-.|.-|+.|+..|+..+..
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~ 155 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAA 155 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555566666655555555433
No 73
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=40.01 E-value=3.4e+02 Score=27.39 Aligned_cols=70 Identities=27% Similarity=0.305 Sum_probs=52.5
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhhhhh
Q 015871 186 CVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDR 258 (399)
Q Consensus 186 lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~~e~lE~ed~ 258 (399)
.-+-+-.-++++.||.-+..-+.+++-.+.+-|+-++.|+.+|-.|.++++... ..+..--..|=|.++.
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~---~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP---GEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch---hHHHHHHHHHHHhccc
Confidence 334455557889999999999999999999999999999999999999888742 2222333445555554
No 74
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=39.25 E-value=2.2e+02 Score=25.68 Aligned_cols=111 Identities=23% Similarity=0.358 Sum_probs=39.4
Q ss_pred ccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhh
Q 015871 112 MEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKK 191 (399)
Q Consensus 112 ~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k 191 (399)
...++..+..+++||-..--.+=-+.+-|-....+++..-..+..... .|..+.-....|+..+-+=
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~-----------~l~~l~~~~~~L~~~~~~l-- 135 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKER-----------RLAELEAELAQLEEKIKDL-- 135 (194)
T ss_dssp ---------------------------------------------HHH-----------HHHHHHHHHHHHHHHHHHH--
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHH-----------HHHHHHHHHHHHHHHHHHH--
Confidence 345678888888888766555555666655555555443333333332 3444555566666655432
Q ss_pred hhhhhHHHHHHHHHHHH----HHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871 192 VHKENVQEKARMNSLIK----ELEVRTQDSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 192 ~q~et~~ek~~m~~~i~----Elq~q~q~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
++.+.++.+....+. -++.+.--+++-+.-|++||++|=+++-.
T Consensus 136 --~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 136 --EEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554443 35666777778888888888888666544
No 75
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=39.03 E-value=4e+02 Score=29.37 Aligned_cols=57 Identities=23% Similarity=0.117 Sum_probs=39.8
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHh
Q 015871 189 AKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKI 249 (399)
Q Consensus 189 A~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~ 249 (399)
-+.|-+..-.+-+-+..+=.-+..+.++--+-|+.|..+|..|-++...+ +...|.+
T Consensus 241 Y~~fl~~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea----~k~s~~i 297 (622)
T COG5185 241 YKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEA----MKISQKI 297 (622)
T ss_pred HHHHhcCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 35566666555555666655666677888888899999999998888765 4455554
No 76
>PHA03325 nuclear-egress-membrane-like protein; Provisional
Probab=38.67 E-value=16 Score=38.06 Aligned_cols=73 Identities=29% Similarity=0.346 Sum_probs=47.2
Q ss_pred hhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHH--HHHHhhhHHHHhhhhhhhH
Q 015871 79 QEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLL--LMEELQSKEERLRNSALHI 154 (399)
Q Consensus 79 QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~l--LmqEle~kE~ELq~Sal~I 154 (399)
+=.+||+|||--|=-|=--||+|||.| +-|.+-++-.+-...|--=|+.- -|+. =|.=+-....=+|.+.+.|
T Consensus 153 r~v~YlRdeLtkRCge~S~Lg~~i~~l-i~lvd~erhrdLc~vLvGmlhQT--PHMWaRSIRLl~rLk~f~Qn~fl~l 227 (418)
T PHA03325 153 RLVAYLRDELTKRCGEGSRLGEHIRQL-ISLVDHERHRDLCHVLVGMLHQT--PHMWARSIRLLGRLKIFYQNSFLKL 227 (418)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHH-HHhcChhhhhhHHHHHHHHhhcC--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999998 66777777666555554444322 2221 0111223345567766655
No 77
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=38.66 E-value=1e+02 Score=27.87 Aligned_cols=83 Identities=19% Similarity=0.329 Sum_probs=15.9
Q ss_pred CCCChHHHHHhHHHHHHHHhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhh
Q 015871 11 SVFDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNA 90 (399)
Q Consensus 11 ~~~d~eellqi~trc~~lrkek~~lr~sqsqs~eli~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~ 90 (399)
++......-....++-.+|.|..-+.-++++..+-+-.+.-....+-.....+...|..|+.++..=-.+|.-|.+.+.-
T Consensus 62 ~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~e 141 (194)
T PF08614_consen 62 GSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKE 141 (194)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455677788888888888887776665555544444444445555556666665555544455444444444
Q ss_pred hhh
Q 015871 91 RNE 93 (399)
Q Consensus 91 Rn~ 93 (399)
.+.
T Consensus 142 k~k 144 (194)
T PF08614_consen 142 KNK 144 (194)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 78
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=38.58 E-value=4.8e+02 Score=27.24 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=37.3
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHH
Q 015871 307 KIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECK 363 (399)
Q Consensus 307 kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTglLEEEcK 363 (399)
..+++.+++...+..-. -.++|.++.-+++++..++++++-..|.+...-|+..+.
T Consensus 330 ~~~~l~~eL~~l~~~~~-~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~ 385 (563)
T TIGR00634 330 YAEKIKEELDQLDDSDE-SLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVE 385 (563)
T ss_pred HHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333322 234566677788888999999999999998888877654
No 79
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=37.87 E-value=3.8e+02 Score=25.83 Aligned_cols=99 Identities=22% Similarity=0.340 Sum_probs=71.1
Q ss_pred HHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhh-------hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q 015871 155 KKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHK-------ENVQEKARMNSLIKELEVRTQDSQEIIECLDKE 227 (399)
Q Consensus 155 eKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~-------et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~ke 227 (399)
..+.+.++++.--+...+..+.-|+..|+..+-..+..-. ........|...+.+...++...++....++..
T Consensus 259 ~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~ 338 (370)
T PF02181_consen 259 LDLEDELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEA 338 (370)
T ss_dssp GGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777788888899999999988877665422 234467889999999999999888888888888
Q ss_pred hHHHHHhhhh--ccchhHHHHHHhHHHH
Q 015871 228 NKELKEKLDS--YETNGRVFCQKIEEWM 253 (399)
Q Consensus 228 NkeL~ekl~~--se~n~r~~~q~~~e~l 253 (399)
-+.+..-+.. +..++..|+..+...+
T Consensus 339 ~~~~~~yfge~~~~~~~~~ff~~l~~F~ 366 (370)
T PF02181_consen 339 FKQLLQYFGEDPKKMSPEEFFKILSQFI 366 (370)
T ss_dssp HHHHHHHTT--TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 8888888754 2346666666655544
No 80
>PRK01156 chromosome segregation protein; Provisional
Probab=37.24 E-value=5.8e+02 Score=27.77 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=8.1
Q ss_pred HHHhhhhhhhHHHHHhhhhc
Q 015871 144 EERLRNSALHIKKLEESISS 163 (399)
Q Consensus 144 E~ELq~Sal~IeKLEESiSS 163 (399)
..++...--.|+++...+..
T Consensus 642 ~~~i~~~~~~i~~l~~~i~~ 661 (895)
T PRK01156 642 KILIEKLRGKIDNYKKQIAE 661 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444433
No 81
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=36.61 E-value=4.3e+02 Score=26.79 Aligned_cols=57 Identities=26% Similarity=0.403 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 015871 287 FGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAEL 350 (399)
Q Consensus 287 f~~l~~kL~~~~~~d~~lk~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAEL 350 (399)
.+++++|+ .++|++ ++++.|.+-+..|+-+|+-...--.... ..++-=+|+.||+.|
T Consensus 306 ~arl~~K~---~~~~~~--~~~~~l~~sl~~y~~vv~y~~~~~~~~~--~~~~El~l~~EM~~L 362 (371)
T PF12309_consen 306 IARLYSKL---ITSDPK--EQLENLEKSLEYYKWVVDYCEKHPEAAE--EFEEELELCREMVQL 362 (371)
T ss_pred HHHHHccc---cCCChH--HHHHHHHHHHHHHHHHHHHHHhChhhHH--HHHHHHHHHHHHHHH
Confidence 35666666 256775 9999999999999999986654333111 123345788888875
No 82
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=36.55 E-value=1.6e+02 Score=29.37 Aligned_cols=92 Identities=25% Similarity=0.307 Sum_probs=49.8
Q ss_pred HHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhh------hhhhHHHHHHHHHHHH
Q 015871 135 LLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKV------HKENVQEKARMNSLIK 208 (399)
Q Consensus 135 lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~------q~et~~ek~~m~~~i~ 208 (399)
-++++|++.-.. .|+-.+|.+-++-+ -.|||+++++.-|-+.|-++-.. ++-...+++.+++.+.
T Consensus 133 ~IIqeLq~t~~~----~LS~~dl~e~~~~l-----~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~ 203 (269)
T PF05278_consen 133 DIIQELQSTPLK----ELSESDLKEMIATL-----KDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLE 203 (269)
T ss_pred HHHHHHhcCcHh----hhhHHHHHHHHHHH-----HHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777654211 23444454433332 36889999999988887654332 2234445555555555
Q ss_pred HHHHHhHhHHHHHHHHHHhhHHHHHhh
Q 015871 209 ELEVRTQDSQEIIECLDKENKELKEKL 235 (399)
Q Consensus 209 Elq~q~q~Aqe~i~~L~keNkeL~ekl 235 (399)
.....+-..++-....+++.++++.++
T Consensus 204 ~~~~ELe~~~EeL~~~Eke~~e~~~~i 230 (269)
T PF05278_consen 204 LKKEELEELEEELKQKEKEVKEIKERI 230 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444444444444444444444444
No 83
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=35.91 E-value=3.6e+02 Score=29.85 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=19.0
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Q 015871 304 LKEKIKGMSLQICEYELLVKQLKEELRAEK 333 (399)
Q Consensus 304 lk~kme~Ms~qi~eyE~LvkQLKeELREEK 333 (399)
.++.++.|..++..+.--|+++|.-+.-++
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~ 666 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKLDYQQ 666 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777766665443
No 84
>PRK00182 tatB sec-independent translocase; Provisional
Probab=35.67 E-value=2.5e+02 Score=26.25 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=40.0
Q ss_pred HHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 015871 291 LSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAE 349 (399)
Q Consensus 291 ~~kL~~~~~~d~~lk~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAE 349 (399)
+-.+++++.+-.+|-+-+..+.+=|.+....++..|+++++|- ..|.+||-..+.+
T Consensus 13 IlvIaLlVfGPerLP~~~r~lg~~ir~~R~~~~~~k~el~~El---g~e~~elrk~l~~ 68 (160)
T PRK00182 13 LLIVGLIVIGPERLPRLIEDVRAALLAARTAINNAKQQLDGDF---GEEFDEFRKPLNQ 68 (160)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHH
Confidence 4455566667777888888999999999999999999998862 2344455444443
No 85
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=35.47 E-value=1.2e+02 Score=29.44 Aligned_cols=53 Identities=19% Similarity=0.104 Sum_probs=36.4
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccc
Q 015871 185 TCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYET 240 (399)
Q Consensus 185 ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~ 240 (399)
..++--.......+||.+++.-+.++..+++.+. ..+..||++||..|.....
T Consensus 60 ~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~---~~l~~EN~rLr~LL~~~~~ 112 (283)
T TIGR00219 60 GISENLKDVNNLEYENYKLRQELLKKNQQLEILT---QNLKQENVRLRELLNSPLS 112 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCccc
Confidence 3343334445667888888888777755555432 3389999999999988643
No 86
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=35.43 E-value=1.1e+02 Score=26.77 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 015871 346 EMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQNKFVA 392 (399)
Q Consensus 346 EMAELRYQmTglLEEEcKRRaCIEQASLQRIaELEAQi~ke~~k~~~ 392 (399)
|=|||+++|. .||-|+|.=-.+-..=.-||.-||..++.|..|..+
T Consensus 26 ERaEmkarIa-~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 26 ERAEMKARIA-FLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5689999995 689999999999999999999999999998877543
No 87
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=35.21 E-value=3.2e+02 Score=24.19 Aligned_cols=69 Identities=26% Similarity=0.326 Sum_probs=49.2
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccc
Q 015871 172 IESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYET 240 (399)
Q Consensus 172 IESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~ 240 (399)
+.+||++-.+.-...=.|..--...-+.+.+...-|..|+...+..+.-++.++....+.+.++..++.
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456777776666666666666666667777777777777777777777777777777777777776543
No 88
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=34.53 E-value=1.2e+02 Score=30.89 Aligned_cols=46 Identities=30% Similarity=0.595 Sum_probs=34.4
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh----HHHHHHH
Q 015871 315 ICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSL----LEEECKR 364 (399)
Q Consensus 315 i~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTgl----LEEEcKR 364 (399)
.++-|+-|.-||--|+|---+- .|=--|+.|||-|++-| +||||-|
T Consensus 63 LQQKEV~iRHLkakLkes~~~l----~dRetEI~eLksQL~RMrEDWIEEECHR 112 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRL----HDRETEIDELKSQLARMREDWIEEECHR 112 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888988888887643222 23446899999999876 8999998
No 89
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=34.24 E-value=7.9e+02 Score=28.42 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=25.2
Q ss_pred chHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 015871 303 NLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMT 355 (399)
Q Consensus 303 ~lk~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmT 355 (399)
.|+.+++....+|.....-.+++.+.|.. +......+-.+++..+|++.
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~----~~~~~~~~~~~~~~~~~~~~ 652 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQ----INKKIEELKREITQAEQELK 652 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666655554444444322 23334444555555555444
No 90
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=34.04 E-value=3.2e+02 Score=23.90 Aligned_cols=24 Identities=50% Similarity=0.547 Sum_probs=12.2
Q ss_pred HHhhhHHHHhhhhhhhHHHHHhhh
Q 015871 138 EELQSKEERLRNSALHIKKLEESI 161 (399)
Q Consensus 138 qEle~kE~ELq~Sal~IeKLEESi 161 (399)
+.++..+.+++.....+..+.+.+
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~ 146 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEI 146 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554433
No 91
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=33.79 E-value=1.6e+02 Score=21.73 Aligned_cols=44 Identities=16% Similarity=0.285 Sum_probs=35.9
Q ss_pred HHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhh
Q 015871 46 IKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNA 90 (399)
Q Consensus 46 i~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~ 90 (399)
.+|. -+.-|+-.++..-+.|++.||.++-..-.++..|+.++..
T Consensus 7 ~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 7 ERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555 6666777888888999999999999999999999877643
No 92
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=32.92 E-value=7.6e+02 Score=27.87 Aligned_cols=120 Identities=27% Similarity=0.299 Sum_probs=68.8
Q ss_pred cchHHHHHHHHHHHhhccchhH--------------HHHHHhhhHHHHhhhhhhh-------HHHHHhhhhccccccccc
Q 015871 113 EILQDKVGQLEEELRRSDSECL--------------LLMEELQSKEERLRNSALH-------IKKLEESISSSALESQCE 171 (399)
Q Consensus 113 e~l~e~V~~l~eEL~rS~Se~~--------------lLmqEle~kE~ELq~Sal~-------IeKLEESiSS~tLeSQcE 171 (399)
++.++.+.+|-.+|...|-.-| +|+++...-+...+.-..+ |.+||+-.-.+ ||.
T Consensus 464 ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~l----t~~ 539 (698)
T KOG0978|consen 464 EDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGL----TSN 539 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHh
Confidence 4566666666666665555554 5555555555555544444 44555555443 577
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhhHH-------HHHHHHHHHHHHHHHhHhHHHHHHHH-------HHhhHHHHHhhh
Q 015871 172 IESLKIDMIALEQTCVEAKKVHKENVQ-------EKARMNSLIKELEVRTQDSQEIIECL-------DKENKELKEKLD 236 (399)
Q Consensus 172 IESmKLD~~aLEQ~lfdA~k~q~et~~-------ek~~m~~~i~Elq~q~q~Aqe~i~~L-------~keNkeL~ekl~ 236 (399)
+-++..+++.+.|++=.-++.-.+.-+ +.++-.+.++.++.++.++.--++-+ +.++..|+.++.
T Consensus 540 ~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 540 ESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888887665554444333 33344455566666666665555443 444444444443
No 93
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=32.39 E-value=15 Score=39.12 Aligned_cols=82 Identities=30% Similarity=0.375 Sum_probs=0.0
Q ss_pred hhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHH
Q 015871 107 LKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTC 186 (399)
Q Consensus 107 lKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~l 186 (399)
=||.+++.|..+|..|++.- -.+|+-...-|.+|+++.. +.+| +++.|=-+..|++.+
T Consensus 322 kKLed~~~lk~qvk~Lee~N-------~~l~e~~~~LEeel~~~~~-------------~~~q--le~~k~qi~eLe~~l 379 (713)
T PF05622_consen 322 KKLEDLEDLKRQVKELEEDN-------AVLLETKAMLEEELKKARA-------------LKSQ--LEEYKKQIQELEQKL 379 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHH-------------HHHH--HHHHHHHHHHHHHHH
Confidence 35555555555555555432 2344444444555554432 2222 234444455555555
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHH
Q 015871 187 VEAKKVHKENVQEKARMNSLIKEL 210 (399)
Q Consensus 187 fdA~k~q~et~~ek~~m~~~i~El 210 (399)
.+..+--+....++.++..-+..+
T Consensus 380 ~~~~~~~~~l~~e~~~L~ek~~~l 403 (713)
T PF05622_consen 380 SEESRRADKLEFENKQLEEKLEAL 403 (713)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444333344444444444433
No 94
>PF06582 DUF1136: Repeat of unknown function (DUF1136); InterPro: IPR010939 This family consists of several eukaryote specific repeats of unknown function. This repeat seems to always be found with IPR007110 from INTERPRO.
Probab=31.77 E-value=32 Score=23.63 Aligned_cols=13 Identities=46% Similarity=0.606 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 015871 371 ASLQRIAELETQI 383 (399)
Q Consensus 371 ASLQRIaELEAQi 383 (399)
.||++|++||+--
T Consensus 9 ~~lekIq~LE~~~ 21 (28)
T PF06582_consen 9 ESLEKIQELEDPS 21 (28)
T ss_pred HHHHHHHHHHccc
Confidence 4899999999854
No 95
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.33 E-value=3.6e+02 Score=23.61 Aligned_cols=41 Identities=32% Similarity=0.488 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhh
Q 015871 65 KHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSL 105 (399)
Q Consensus 65 ~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~L 105 (399)
.+++.+..++.+.......++..+......+..+.+-++++
T Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 142 (191)
T PF04156_consen 102 ERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKEL 142 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443333333
No 96
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=31.30 E-value=2e+02 Score=23.70 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=42.4
Q ss_pred HHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccc-cchHHHHHHHHHHHhh
Q 015871 69 KLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDM-EILQDKVGQLEEELRR 128 (399)
Q Consensus 69 ~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~-e~l~e~V~~l~eEL~r 128 (399)
.+-+|+.++-..=|=+..+++.--.|++.+-..|..||..-..| ...+++|.+|+.+|-.
T Consensus 15 ~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 15 NLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444445555667777778888888888999877766 4679999999999854
No 97
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.18 E-value=9.3e+02 Score=28.34 Aligned_cols=68 Identities=25% Similarity=0.362 Sum_probs=41.7
Q ss_pred chhhhhhhHHHHHHHHHHHh-------hhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 015871 171 EIESLKIDMIALEQTCVEAK-------KVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 238 (399)
Q Consensus 171 EIESmKLD~~aLEQ~lfdA~-------k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~s 238 (399)
|.+-+.--+-.|.+.+.|-. ---+++.-..+.|..-|.+++.++++-|++...|--|..+|..++...
T Consensus 445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~ 519 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQK 519 (1118)
T ss_pred HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 34444444555555555421 112223333456666678888888888888888888877777776654
No 98
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=31.09 E-value=8e+02 Score=27.53 Aligned_cols=156 Identities=24% Similarity=0.350 Sum_probs=102.8
Q ss_pred HHHHHHHhhhhhhh--------------HhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchh
Q 015871 68 QKLERELMNCSQEI--------------DYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSEC 133 (399)
Q Consensus 68 q~LEkELlNC~QEI--------------DYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~ 133 (399)
+-=|..++|-|+=+ -.|.+|=+ =..|-..|-+-+-+++=.+++....+..|..|.+.+..-.+..
T Consensus 83 k~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~-~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~ 161 (629)
T KOG0963|consen 83 KFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQK-ASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLL 161 (629)
T ss_pred HhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHH
Confidence 34467777777655 12222222 2345556666677777777888888888888877776655443
Q ss_pred HHHHH------------HhhhHHHH----hhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhh-hhhh
Q 015871 134 LLLME------------ELQSKEER----LRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKV-HKEN 196 (399)
Q Consensus 134 ~lLmq------------Ele~kE~E----Lq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~-q~et 196 (399)
---+. +...++.. .+.-+-+++.+|.+|+++ -.++-+---.+|+++.. ++++
T Consensus 162 ~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~l-----------q~a~~~t~~el~~~~s~~dee~ 230 (629)
T KOG0963|consen 162 EIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSL-----------QSAIEDTQNELFDLKSKYDEEV 230 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhhHHHHHHHhhhhhh
Confidence 32222 11222222 244566788888887754 33444444568888887 8888
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhcc
Q 015871 197 VQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYE 239 (399)
Q Consensus 197 ~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se 239 (399)
.-..+..+=+..+|. +||..|..|+.++..|++-+...+
T Consensus 231 ~~k~aev~lim~eLe----~aq~ri~~lE~e~e~L~~ql~~~N 269 (629)
T KOG0963|consen 231 AAKAAEVSLIMTELE----DAQQRIVFLEREVEQLREQLAKAN 269 (629)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888888888765 789999999999999998887653
No 99
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=30.99 E-value=7.4e+02 Score=27.15 Aligned_cols=55 Identities=27% Similarity=0.337 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHH
Q 015871 199 EKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWM 253 (399)
Q Consensus 199 ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~~e~l 253 (399)
|.+....+|.+-.--...++..|.-|..|+++|+-++....+-...+.-++.+|+
T Consensus 93 El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~ 147 (546)
T KOG0977|consen 93 ELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYL 147 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 4556666666666666677777778888888888777776555555555555555
No 100
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=30.81 E-value=3.7e+02 Score=23.60 Aligned_cols=45 Identities=31% Similarity=0.353 Sum_probs=29.9
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHH---HHhhhhhhHHHHHHHHHHHH
Q 015871 306 EKIKGMSLQICEYELLVKQLKEELR---AEKFKAKEEAEDLAQEMAEL 350 (399)
Q Consensus 306 ~kme~Ms~qi~eyE~LvkQLKeELR---EEKLKAKEEAEDLtQEMAEL 350 (399)
..++.|+.+|+..+-=+-.||+++. .+|-.|-+|-=.|+.+..++
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999988888888764 33444444444444444444
No 101
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=30.65 E-value=7.2e+02 Score=28.44 Aligned_cols=74 Identities=30% Similarity=0.405 Sum_probs=53.9
Q ss_pred hhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhh
Q 015871 83 YLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESIS 162 (399)
Q Consensus 83 YLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiS 162 (399)
-|+=|+..=..-|..=||-|.+||+=+++.. +-|-++|+-||.-.+++--||
T Consensus 122 sL~LQvsvLteqVeaQgEKIrDLE~cie~kr------------------------~kLnatEEmLQqellsrtsLE---- 173 (861)
T KOG1899|consen 122 SLQLQVSVLTEQVEAQGEKIRDLETCIEEKR------------------------NKLNATEEMLQQELLSRTSLE---- 173 (861)
T ss_pred hheehHHHHHHHHHHhhhhHHHHHHHHHHHH------------------------hhhchHHHHHHHHHHhhhhHH----
Confidence 3444555555555666888999988765432 125567888888888887777
Q ss_pred ccccccccchhhhhhhHHHHHH
Q 015871 163 SSALESQCEIESLKIDMIALEQ 184 (399)
Q Consensus 163 S~tLeSQcEIESmKLD~~aLEQ 184 (399)
+--||---||-++||-.+|||.
T Consensus 174 TqKlDLmaevSeLKLkltalEk 195 (861)
T KOG1899|consen 174 TQKLDLMAEVSELKLKLTALEK 195 (861)
T ss_pred HHHhHHHHHHHHhHHHHHHHHH
Confidence 6677778899999999999984
No 102
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=30.45 E-value=6.5e+02 Score=26.31 Aligned_cols=37 Identities=24% Similarity=0.458 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhHHHHHhhhhcc--------chhHHHHHHhHHHHh
Q 015871 218 QEIIECLDKENKELKEKLDSYE--------TNGRVFCQKIEEWME 254 (399)
Q Consensus 218 qe~i~~L~keNkeL~ekl~~se--------~n~r~~~q~~~e~lE 254 (399)
...++.|+++..+++.++.... .....|...+..+|.
T Consensus 345 ~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~ 389 (563)
T TIGR00634 345 DESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELK 389 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666665555554322 223455566666663
No 103
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=30.33 E-value=9.9e+02 Score=28.40 Aligned_cols=207 Identities=19% Similarity=0.273 Sum_probs=115.8
Q ss_pred CCChHHHHHhHHHHHHHHhhhhhhhhhhhhhhHHH-------HHHHhhhhhhhhhhhhhhHHHHHHHHHH--------hh
Q 015871 12 VFDVEELLQIETRCRELRKEKDTLRESQSQSFDLI-------KRLELHAKSLSEAHNEDKKHIQKLEREL--------MN 76 (399)
Q Consensus 12 ~~d~eellqi~trc~~lrkek~~lr~sqsqs~eli-------~rleL~~~slSea~~eDk~~Iq~LEkEL--------lN 76 (399)
+.|.++|++-----+.||+.-+-|..+=-++-+-| .+|+-++...-+ +..-+-+|.+|+.=. .+
T Consensus 170 Aig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~re-r~~~~~~Ie~l~~k~~~v~y~~~~~ 248 (1072)
T KOG0979|consen 170 AIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRE-RERKKSKIELLEKKKKWVEYKKHDR 248 (1072)
T ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccchHhhhH
Confidence 46777788777667777766554443333222222 222222222211 111223344443210 01
Q ss_pred hh----hhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhh
Q 015871 77 CS----QEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSAL 152 (399)
Q Consensus 77 C~----QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal 152 (399)
=| +.-|-+.-++-.=+.++.-+.-|+-.||= ...++..+...+..++..++-.+--....+...+.+++..--
T Consensus 249 ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~---~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~ 325 (1072)
T KOG0979|consen 249 EYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELES---EKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKN 325 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11233444444444555555555555543 344566677777778887777777777777777777766554
Q ss_pred hHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 015871 153 HIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDK 226 (399)
Q Consensus 153 ~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~k 226 (399)
..+ +.-.-+..-|-.|++.+=|+..+.--|=.+.-.+.-.-+.-+.+..+++...-.+.++...|+.--+
T Consensus 326 ~le----~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~ 395 (1072)
T KOG0979|consen 326 KLE----SLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQL 395 (1072)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence 443 3336677788899999999999888777766555544444456666666666666666555554433
No 104
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=29.77 E-value=7e+02 Score=26.45 Aligned_cols=119 Identities=26% Similarity=0.321 Sum_probs=65.7
Q ss_pred HHHHHHhHHHHhhhhhcchhhhhhhhhhhhcccccccccchhhhhHHHHHHHHHhhCCCCchHHHHHhHHHHHhhHHH-H
Q 015871 243 RVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYEL-L 321 (399)
Q Consensus 243 r~~~q~~~e~lE~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~~kL~~~~~~d~~lk~kme~Ms~qi~eyE~-L 321 (399)
|-.+.++++++..-++....+|...+.|.+. ..+ |.+. .++. .+||+..++..|-.. |
T Consensus 88 r~i~es~~e~q~e~~qL~~qnqkL~nqL~~~----------~~v----f~k~----k~~~---q~LE~li~~~~EEn~~l 146 (401)
T PF06785_consen 88 RKIRESVEERQQESEQLQSQNQKLKNQLFHV----------REV----FMKT----KGDI---QHLEGLIRHLREENQCL 146 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------HHH----HHHh----cchH---HHHHHHHHHHHHHHHHH
Confidence 4455777777766666667777777777665 112 3333 1222 566666555443221 1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHh
Q 015871 322 VKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQ-----RIAELETQIEK 385 (399)
Q Consensus 322 vkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQASLQ-----RIaELEAQi~k 385 (399)
=-|| +++..+--...||+-.|-+|.||-+.-.+-+.+ ||- -.-+||++.- -|.+||+.|+.
T Consensus 147 qlqL-~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~-eyQ-atf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 147 QLQL-DALQQECGEKEEESQTLNRELAEALAYQQELND-EYQ-ATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred HHhH-HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH-Hhh-cccccchhhhHHHHHHHHHHHHHHHH
Confidence 1122 223333333457889999999985444444444 442 2334555543 37888888865
No 105
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.65 E-value=4e+02 Score=25.18 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=24.2
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 015871 205 SLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 238 (399)
Q Consensus 205 ~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~s 238 (399)
....+++..+.++...|..|+.+|.+|++.+...
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566667777777888888888887664
No 106
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=29.58 E-value=2.5e+02 Score=23.75 Aligned_cols=85 Identities=22% Similarity=0.366 Sum_probs=49.5
Q ss_pred hhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhH----HHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 015871 149 NSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENV----QEKARMNSLIKELEVRTQDSQEIIECL 224 (399)
Q Consensus 149 ~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~----~ek~~m~~~i~Elq~q~q~Aqe~i~~L 224 (399)
..-.-|+.|++.|+++|. |-|+.-.... -..-.+...=.+-+=++ .-.+.+...+..++-+++.++..++.+
T Consensus 24 ~~~~Di~~Lq~~i~~vtf---~~l~~e~~~~-~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l 99 (118)
T PF13815_consen 24 VRELDIDTLQENIENVTF---CDLENEDCQH-FVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKL 99 (118)
T ss_pred HhccCHHHHHHHHHhcce---eccChhhccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999987 6666544322 01111111111222222 224456666777777777777777777
Q ss_pred HHhhHHHHHhhhh
Q 015871 225 DKENKELKEKLDS 237 (399)
Q Consensus 225 ~keNkeL~ekl~~ 237 (399)
...++++.+++..
T Consensus 100 ~~~~~~~~~~~k~ 112 (118)
T PF13815_consen 100 KQKLKKQKEEIKK 112 (118)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666543
No 107
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=29.31 E-value=1.9e+02 Score=23.39 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=38.9
Q ss_pred chhhhhhhHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q 015871 171 EIESLKIDMIALEQTCVE-AKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKEN 228 (399)
Q Consensus 171 EIESmKLD~~aLEQ~lfd-A~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keN 228 (399)
|-=++||-+--||+++=. +....+..+.+|-.+.--+..++-.++.-++.+..+++.+
T Consensus 15 ENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 15 ENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred hhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445789999999999974 3444555666666666666666666666666665555443
No 108
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=29.26 E-value=2e+02 Score=30.62 Aligned_cols=52 Identities=37% Similarity=0.383 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHH--HHHhhhhhhHHHHHHHHHHHH--------HHHHh--hhHHHHHHHHHHH
Q 015871 317 EYELLVKQLKEEL--RAEKFKAKEEAEDLAQEMAEL--------RYQMT--SLLEEECKRRACI 368 (399)
Q Consensus 317 eyE~LvkQLKeEL--REEKLKAKEEAEDLtQEMAEL--------RYQmT--glLEEEcKRRaCI 368 (399)
.+|.-|+.||++. +..=+..=+.=++|..+|.+| ||.-- .+|.||-.||.+.
T Consensus 327 ~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~~RGg~LLkEEk~rk~i~ 390 (619)
T PF03999_consen 327 LHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESSKDPSRLNNRGGHLLKEEKERKRIQ 390 (619)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhcccccHHHHHHHHHHHHH
Confidence 3445556666654 334466667778888888888 66543 3899998888774
No 109
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=29.19 E-value=1e+02 Score=28.30 Aligned_cols=46 Identities=33% Similarity=0.535 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHh
Q 015871 65 KHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELR 127 (399)
Q Consensus 65 ~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~ 127 (399)
.-+..+++++.+|..|+--|.- .|- -||...++|.++|..|++||.
T Consensus 61 ~~v~~~~~~i~~k~~El~~L~~-~d~----------------~kv~~~E~L~d~v~eLkeel~ 106 (146)
T PF05852_consen 61 NKVSSLETEISEKKKELSHLKK-FDR----------------KKVEDLEKLTDRVEELKEELE 106 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCH----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888887776654 332 367889999999999999874
No 110
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=28.88 E-value=1e+03 Score=28.22 Aligned_cols=231 Identities=24% Similarity=0.305 Sum_probs=111.3
Q ss_pred HhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhh
Q 015871 74 LMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALH 153 (399)
Q Consensus 74 LlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~ 153 (399)
+.-|++=+|--+..+..--.++..|.-|+-..+-++..++.+++.-..++. | -.+=+|-..-+. +.+|...--.
T Consensus 216 ~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~-L--k~k~~W~~V~~~---~~ql~~~~~~ 289 (1074)
T KOG0250|consen 216 YSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQ-L--KAKMAWAWVNEV---ERQLNNQEEE 289 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHH---HHHHHHHHHH
Confidence 333444445555566666677777888888888888877776665544432 1 123367665543 4445555555
Q ss_pred HHHHHhhhhcccc---ccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHH
Q 015871 154 IKKLEESISSSAL---ESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKE 230 (399)
Q Consensus 154 IeKLEESiSS~tL---eSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNke 230 (399)
|-+.++-++.++= +-+-.|+++--+++..|..+= +-..+-+.++.=|+++.-.+ +.+..+--+
T Consensus 290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~-------~~~~e~~~~d~Ei~~~r~~~-------~~~~re~~~ 355 (1074)
T KOG0250|consen 290 IKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIG-------ELKDEVDAQDEEIEEARKDL-------DDLRREVND 355 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-------HHHHhhhhhhHHHHHHHHHH-------HHHHHHHHH
Confidence 5555555554321 123345555555554443332 22222222332222222222 222222222
Q ss_pred HHHhhhhccchhHHHHHHhHHHHhhhhhcchhhhhhhhhhhhcccccccccchhhhhHHHHHHHHHhhCCCCchHHHHHh
Q 015871 231 LKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKG 310 (399)
Q Consensus 231 L~ekl~~se~n~r~~~q~~~e~lE~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~~kL~~~~~~d~~lk~kme~ 310 (399)
++++..-+..+++..--. -+++ -+++++- -..+-..+=+.+ ....++++.
T Consensus 356 ~~~~~~~~~n~i~~~k~~-~d~l-------------~k~I~~~---------~~~~~~~~~~~~-------~e~e~k~~~ 405 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKKE-VDRL-------------EKQIADL---------EKQTNNELGSEL-------EERENKLEQ 405 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHH-------------HHHHHHH---------HHHHHhhhhhhH-------HHHHHHHHH
Confidence 222222222222211000 0000 0000000 000000001111 122367888
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHH---HHHHHHHHHH
Q 015871 311 MSLQICEYELLVKQLKEELRAEKFKAKEEAEDLA---QEMAELRYQM 354 (399)
Q Consensus 311 Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLt---QEMAELRYQm 354 (399)
+.+++...+.++.+|++|+.+=+-+++++-+.+. -+..-||.++
T Consensus 406 L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i 452 (1074)
T KOG0250|consen 406 LKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKI 452 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888776665552 3445555544
No 111
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=28.87 E-value=8.1e+02 Score=26.89 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=45.1
Q ss_pred CCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHH
Q 015871 300 PDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEE 360 (399)
Q Consensus 300 ~d~~lk~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTglLEE 360 (399)
.-..|+.++-+.-.++.-.+-.|.-|+-.|.+++--=-....|.--+|+++|-+||.++=|
T Consensus 304 ~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~E 364 (546)
T KOG0977|consen 304 RISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVE 364 (546)
T ss_pred cccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3455667777776677777777777777777777666666677778999999999988743
No 112
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=28.74 E-value=1.6e+02 Score=27.45 Aligned_cols=69 Identities=25% Similarity=0.443 Sum_probs=42.3
Q ss_pred hhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccc----hHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhh
Q 015871 80 EIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEI----LQDKVGQLEEELRRSDSECLLLMEELQSKEERLR 148 (399)
Q Consensus 80 EIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~----l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq 148 (399)
+.+|+--++.-..++-.-+.++|-.||-|+.++.. +-......+.|+.|..|.+=-+=+++..-|-+-+
T Consensus 111 ~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 111 ERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666677778888999999998886655 3333444445555555555555555544444333
No 113
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=28.47 E-value=73 Score=26.11 Aligned_cols=72 Identities=22% Similarity=0.305 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccccccCCC
Q 015871 320 LLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQAS-LQRIAELETQIEKGQNKFVATGRHL 397 (399)
Q Consensus 320 ~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQAS-LQRIaELEAQi~ke~~k~~~a~~~~ 397 (399)
.++.+|..+|..---=-.+....|..-+..+++++ .. .--......+ ..|+...-+...-.|-+.++++||+
T Consensus 4 ~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe~~L----~~--~~~~~~~~~~l~d~l~~av~~FE~~HP~l~~~lr~i 76 (85)
T PF14357_consen 4 ELLEKLHQELEQNPPLDEETRAELSSLDDDIEAQL----AE--EDEAEAEDESLVDRLNEAVERFEASHPKLAGILRNI 76 (85)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH----hc--CCcccccchhHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 45667777776432222344444544444444444 43 1122233344 4888888888888889988888875
No 114
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=28.35 E-value=4.8e+02 Score=24.15 Aligned_cols=37 Identities=41% Similarity=0.452 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhcc
Q 015871 203 MNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYE 239 (399)
Q Consensus 203 m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se 239 (399)
|...|.==+-..+.-|++|-.|..||+.||+.|..|.
T Consensus 144 M~~ai~~de~~~~~~qe~i~qL~~EN~~LRelL~Is~ 180 (181)
T PF05769_consen 144 MRKAIELDEENSQEEQEIIAQLETENKGLRELLQISK 180 (181)
T ss_pred HHHHHhcchhhhHhHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444433344567788999999999999999998863
No 115
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=27.77 E-value=5.2e+02 Score=25.10 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccch
Q 015871 195 ENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETN 241 (399)
Q Consensus 195 et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n 241 (399)
-+..+-+.|++-|.-|+-++|.-+.++-+.+-|.|+|---|.+-++-
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQ 122 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQ 122 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 45577889999999999999999999999999999998888776543
No 116
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=27.71 E-value=2.1e+02 Score=24.18 Aligned_cols=34 Identities=35% Similarity=0.468 Sum_probs=29.1
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 015871 205 SLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 238 (399)
Q Consensus 205 ~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~s 238 (399)
.++.-|+..+|.|-.+|.-|.-|..+|+++=...
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L 37 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999985543
No 117
>PRK11032 hypothetical protein; Provisional
Probab=27.62 E-value=82 Score=29.01 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=23.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHh-------hhhhh---HHHHHHHHH
Q 015871 311 MSLQICEYELLVKQLKEELRAEK-------FKAKE---EAEDLAQEM 347 (399)
Q Consensus 311 Ms~qi~eyE~LvkQLKeELREEK-------LKAKE---EAEDLtQEM 347 (399)
|.++...|+.++.++++-|+.-. -+|++ .|.|||++=
T Consensus 1 ~~k~~~~Y~~ll~~v~~~l~~~~~~l~~~ve~a~~~~~~~~elT~dE 47 (160)
T PRK11032 1 MNKVAQYYRELVASLTERLRNGERDIDALVESARKRVDAAGELTRDE 47 (160)
T ss_pred CchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 55677788888888877776533 23333 566666653
No 118
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=27.54 E-value=2e+02 Score=21.77 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=28.6
Q ss_pred HHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 015871 291 LSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAE 332 (399)
Q Consensus 291 ~~kL~~~~~~d~~lk~kme~Ms~qi~eyE~LvkQLKeELREE 332 (399)
+-.+++++++-.+|-+-+..+.+-+.++..-++..+++.+.+
T Consensus 9 I~vvalllfGp~kLP~~~r~lG~~ir~fk~~~~~~~~~~~~~ 50 (53)
T PF02416_consen 9 ILVVALLLFGPKKLPELARSLGKAIREFKKAINEAKEEIEKE 50 (53)
T ss_dssp HHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 444555666777899999999999999888888888875544
No 119
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=27.49 E-value=3.4e+02 Score=22.12 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=35.2
Q ss_pred HHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhh
Q 015871 291 LSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKF 334 (399)
Q Consensus 291 ~~kL~~~~~~d~~lk~kme~Ms~qi~eyE~LvkQLKeELREEKL 334 (399)
+-.+++++.+..+|-+.+..+.+-+.+....++..|+++.++--
T Consensus 11 I~vvallv~GP~kLP~~~r~~G~~i~~~r~~~~~~~~~~~~e~~ 54 (80)
T TIGR01410 11 IAVVALVVLGPERLPVAIRAVGKFVRRLRGMASDVKNELDEELK 54 (80)
T ss_pred HHHHHHheECchHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhc
Confidence 44555666677788999999999999999999999999876543
No 120
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.34 E-value=2.5e+02 Score=25.09 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=7.0
Q ss_pred CchHHHHHhHHHHHh
Q 015871 302 ANLKEKIKGMSLQIC 316 (399)
Q Consensus 302 ~~lk~kme~Ms~qi~ 316 (399)
..++++++.+.+|..
T Consensus 128 ~~~~~~~~~~~kq~~ 142 (192)
T PF05529_consen 128 IKLEEKLEALKKQAE 142 (192)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445554444443
No 121
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.24 E-value=8.9e+02 Score=26.85 Aligned_cols=66 Identities=35% Similarity=0.483 Sum_probs=33.1
Q ss_pred hhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhh
Q 015871 92 NEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESI 161 (399)
Q Consensus 92 n~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESi 161 (399)
..+..-+-.++-.++-+...+.....++..+...+.. +.-++.+++.-...+..-.-.++++++..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 338 (908)
T COG0419 273 EEELRELERLLEELEEKIERLEELEREIEELEEELEG----LRALLEELEELLEKLKSLEERLEKLEEKL 338 (908)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555555555554 44455555555544444444455555433
No 122
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=26.72 E-value=8.2e+02 Score=26.27 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHH
Q 015871 175 LKIDMIALEQTCVEAK--KVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKE 230 (399)
Q Consensus 175 mKLD~~aLEQ~lfdA~--k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNke 230 (399)
|+...-+|=...|+.+ +|. -+-+..+..+++=++-++..-++-|+.+.++..+
T Consensus 111 L~~~F~~LA~~ile~k~~~f~---~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~ 165 (475)
T PRK10361 111 LSEQFENLANRIFEHSNRRVD---EQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQ 165 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555557777777764 343 3344566777777777777777777766655433
No 123
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=26.61 E-value=1e+03 Score=27.34 Aligned_cols=47 Identities=32% Similarity=0.456 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhh
Q 015871 115 LQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESI 161 (399)
Q Consensus 115 l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESi 161 (399)
|++.-+...+=|+.|+.++=.|++||...-..||.+.-.-.+|++-+
T Consensus 273 LeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~l 319 (786)
T PF05483_consen 273 LEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDL 319 (786)
T ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666677999999999999999999999999888888888543
No 124
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.32 E-value=1.2e+02 Score=25.52 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=26.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHHhhHHHHHhhh
Q 015871 206 LIKELEVRTQDSQEIIECLDKENKELKEKLD 236 (399)
Q Consensus 206 ~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~ 236 (399)
++.-|+..+|.|-.+|.-|.-|..+|++|-.
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667888889999999999999999998865
No 125
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=26.02 E-value=3.3e+02 Score=28.35 Aligned_cols=68 Identities=25% Similarity=0.299 Sum_probs=49.0
Q ss_pred HhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHH-----HHHHHHhhhhhhhHHHHHHHHHH
Q 015871 139 ELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALE-----QTCVEAKKVHKENVQEKARMNSL 206 (399)
Q Consensus 139 Ele~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLE-----Q~lfdA~k~q~et~~ek~~m~~~ 206 (399)
++.---.-||.-..-.+.|||-+..+|===|=||.-+|=++...| |+.=-|+.|++---.-.+||.++
T Consensus 245 e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRiskl 317 (395)
T PF10267_consen 245 EYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKL 317 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444556667778899999999999888999999998887777 55556666666555555555554
No 126
>PF08988 DUF1895: Protein of unknown function (DUF1895); InterPro: IPR015081 The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The function of this protein is, as yet, unknown. ; PDB: 1ZW0_B 2P58_A 2UWJ_E 2Q1K_D 3PH0_B.
Probab=25.94 E-value=1.6e+02 Score=23.80 Aligned_cols=12 Identities=42% Similarity=0.401 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHh
Q 015871 179 MIALEQTCVEAK 190 (399)
Q Consensus 179 ~~aLEQ~lfdA~ 190 (399)
||.||+.|+.|.
T Consensus 1 mT~LE~~L~~~~ 12 (68)
T PF08988_consen 1 MTNLEQRLSNAS 12 (68)
T ss_dssp SCHHHHHHTCTS
T ss_pred CchHHHHHHhcc
Confidence 688999998843
No 127
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.84 E-value=4.6e+02 Score=29.36 Aligned_cols=87 Identities=24% Similarity=0.335 Sum_probs=63.0
Q ss_pred hHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhh--hhhhHHHHHH-HHHHHHHHHHHhHhHH
Q 015871 142 SKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKV--HKENVQEKAR-MNSLIKELEVRTQDSQ 218 (399)
Q Consensus 142 ~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~--q~et~~ek~~-m~~~i~Elq~q~q~Aq 218 (399)
..+.++.+---.+++|++-++++ +-+|+-||=-+..|+-.|=.+..- ++.-..-.-+ +++-|..|+..|.+..
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L----~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSEL----KRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566778888888776 457888998899998888655432 2222222223 6778889999999999
Q ss_pred HHHHHHHHhhHHHH
Q 015871 219 EIIECLDKENKELK 232 (399)
Q Consensus 219 e~i~~L~keNkeL~ 232 (399)
+.|+.|+....+|+
T Consensus 495 ~~ve~L~~~l~~l~ 508 (652)
T COG2433 495 KRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888886
No 128
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=25.80 E-value=4.7e+02 Score=28.19 Aligned_cols=70 Identities=27% Similarity=0.368 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhH
Q 015871 62 EDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECL 134 (399)
Q Consensus 62 eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~ 134 (399)
+-..+.-.|+++|-.||+----+.-|+-+--+|...+--|+--.|+-| .+|+++..++.+|.-++.-.|=
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l---~~Lq~e~~~l~e~~v~~~a~~~ 79 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELEL---NRLQEENTQLNEERVREEATEK 79 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344566679999999999999999999999999999999999888765 4689999999999988554443
No 129
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=25.60 E-value=1.3e+03 Score=28.14 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=57.0
Q ss_pred HHHhHHHHHHH----HhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhHHH---HHHHHHHhhhh-hhhHhhHHhhh
Q 015871 18 LLQIETRCREL----RKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHI---QKLERELMNCS-QEIDYLQDQLN 89 (399)
Q Consensus 18 llqi~trc~~l----rkek~~lr~sqsqs~eli~rleL~~~slSea~~eDk~~I---q~LEkELlNC~-QEIDYLqDQLn 89 (399)
.-.++++|.+. -+..-+|..+-+....-++.+..--.++.++-..|+.+- .++..+.--|. +.+--+|+..+
T Consensus 418 ~~~~~~~~~~~~~e~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~k 497 (1317)
T KOG0612|consen 418 KEANAERSDVDSQEIHKTLQILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQK 497 (1317)
T ss_pred hhccccccchhhhccccchhhcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445554433 344556666655555566666655555555555555543 44444444555 35555555544
Q ss_pred hhh-------hhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccc
Q 015871 90 ARN-------EEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDS 131 (399)
Q Consensus 90 ~Rn-------~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~S 131 (399)
.=. .+-+.|..+|.+++= ++++++..+..+++.+..+++
T Consensus 498 e~~ek~~~~~~~~~~l~~~~~~~~e---ele~~q~~~~~~~~~~~kv~~ 543 (1317)
T KOG0612|consen 498 EVEEKLSEEEAKKRKLEALVRQLEE---ELEDAQKKNDNAADSLEKVNS 543 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHH
Confidence 332 334445555555442 334445555556555555554
No 130
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=25.53 E-value=1e+03 Score=26.99 Aligned_cols=153 Identities=30% Similarity=0.420 Sum_probs=65.4
Q ss_pred hHhhHHhhhhhhhhhhhhhhhhhhhhhhhcc----ccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHH
Q 015871 81 IDYLQDQLNARNEEVYSLSEHVHSLELKLVD----MEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKK 156 (399)
Q Consensus 81 IDYLqDQLn~Rn~Evn~l~EHih~LElKL~~----~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeK 156 (399)
||-|+++|.+...+.+.|---|-.|-++|.. +++...-+-.+.+|+-+..++==-|-..++-++.++...---|+.
T Consensus 324 i~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~ 403 (775)
T PF10174_consen 324 IEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIEN 403 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333332 222333333444444444444434444555555555555555666
Q ss_pred HHhhhhccccccccchhhhhhhHHHHHHHHH---HHhhhhhhhHHHHHHHHHHHHHHHHHh-HhHHHHHHHHHHhhHHHH
Q 015871 157 LEESISSSALESQCEIESLKIDMIALEQTCV---EAKKVHKENVQEKARMNSLIKELEVRT-QDSQEIIECLDKENKELK 232 (399)
Q Consensus 157 LEESiSS~tLeSQcEIESmKLD~~aLEQ~lf---dA~k~q~et~~ek~~m~~~i~Elq~q~-q~Aqe~i~~L~keNkeL~ 232 (399)
|++.+. +--+.+.+.|-=+.+ ..--. .|----++++.++.++.+-|.+..-.. ++..+-++...++|+.|+
T Consensus 404 Lee~l~----ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk 478 (775)
T PF10174_consen 404 LEEQLR----EKDRQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELK 478 (775)
T ss_pred HHHHHH----HHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665443 222222222211110 00000 111222344445555555554443222 233455566666777766
Q ss_pred Hhhhhc
Q 015871 233 EKLDSY 238 (399)
Q Consensus 233 ekl~~s 238 (399)
.++..-
T Consensus 479 ~~~~~L 484 (775)
T PF10174_consen 479 AKLESL 484 (775)
T ss_pred HHHHHH
Confidence 666553
No 131
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=25.35 E-value=5.7e+02 Score=24.67 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhh
Q 015871 65 KHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHS 104 (399)
Q Consensus 65 ~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~ 104 (399)
..+...+.||-.=-.|+++|+++++....|+..|-.-...
T Consensus 66 ~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 66 LELEVCENELQRKKNEAELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred HhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 3456667777777777888888888877777766554444
No 132
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=25.32 E-value=41 Score=28.67 Aligned_cols=64 Identities=23% Similarity=0.390 Sum_probs=49.3
Q ss_pred hhhhhHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871 174 SLKIDMIALEQTCVE-AKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 174 SmKLD~~aLEQ~lfd-A~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
-|.-.+-.|-.+||+ |.+.-...-.+.+.+..-...++-++.++...++.|..+.+.|+..+..
T Consensus 19 ~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 19 QIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677888985 6676666666777777778888888999999999998888888877665
No 133
>PRK04654 sec-independent translocase; Provisional
Probab=24.71 E-value=6.7e+02 Score=24.58 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=40.8
Q ss_pred HHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 015871 291 LSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTS 356 (399)
Q Consensus 291 ~~kL~~~~~~d~~lk~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTg 356 (399)
+-.+++++.+--+|-+.+..+.+-|.+....+...|+|+..|- +.++|-.+|.+++..+..
T Consensus 12 I~VVALlV~GPerLPe~aRtlGk~irk~R~~~~~vk~El~~El-----~~~ELrk~l~~~~~~i~~ 72 (214)
T PRK04654 12 IAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELEREL-----EAEELKRSLQDVQASLRE 72 (214)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHH
Confidence 4455555666777888888888888888888888888887662 234555555555555443
No 134
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.59 E-value=6.9e+02 Score=24.70 Aligned_cols=43 Identities=28% Similarity=0.435 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHH
Q 015871 116 QDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLE 158 (399)
Q Consensus 116 ~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLE 158 (399)
.+.+..+++|+..=.-+.=-|++||+..|.+-....-.|.+|+
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333444455555555555544444455544
No 135
>PF15566 Imm18: Immunity protein 18
Probab=24.56 E-value=35 Score=26.71 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=17.1
Q ss_pred hhhHhhHHhh-hhhhhhhhhhhhhhh
Q 015871 79 QEIDYLQDQL-NARNEEVYSLSEHVH 103 (399)
Q Consensus 79 QEIDYLqDQL-n~Rn~Evn~l~EHih 103 (399)
++++||+++| |.++.+ .+.|+|
T Consensus 2 egL~~L~~~l~~L~~~~---~~~H~H 24 (52)
T PF15566_consen 2 EGLELLQDQLENLQEKE---PFDHEH 24 (52)
T ss_pred chHHHHHHHHHHHHhcc---CCCCce
Confidence 5788999886 566666 788887
No 136
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=24.49 E-value=3.9e+02 Score=28.35 Aligned_cols=57 Identities=39% Similarity=0.474 Sum_probs=40.9
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH--------HHHHHhhhHHHHHHHHHHHHHHHHH
Q 015871 310 GMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAE--------LRYQMTSLLEEECKRRACIEQASLQ 374 (399)
Q Consensus 310 ~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAE--------LRYQmTglLEEEcKRRaCIEQASLQ 374 (399)
=|-+.-.++..|++-||+= -|.|+||=.||+|+-+ -..-|+++ =+||| .|.+++-..
T Consensus 31 ~Mek~eeeh~~Lm~tL~k~-----kk~KeeAl~l~~e~e~kLee~e~~Cn~sm~~l-WeECk--pCL~~tCm~ 95 (436)
T PF01093_consen 31 MMEKTEEEHKELMKTLEKS-----KKEKEEALKLANEVEEKLEEEEEVCNESMMAL-WEECK--PCLKQTCMR 95 (436)
T ss_pred HHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHhHH
Confidence 3567778899999998753 4557788888888754 34567755 46785 898887654
No 137
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.17 E-value=6.8e+02 Score=24.47 Aligned_cols=62 Identities=23% Similarity=0.196 Sum_probs=34.8
Q ss_pred cccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 015871 164 SALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLD 225 (399)
Q Consensus 164 ~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~ 225 (399)
++...+=+++++|-.+..+...+=.=++-..+.-.+...++..|.++..+.++.+.-|..++
T Consensus 203 ~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 203 IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555667777777777776665444444444444555555555555555555554444443
No 138
>PRK04098 sec-independent translocase; Provisional
Probab=24.11 E-value=5.1e+02 Score=24.15 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=32.6
Q ss_pred HHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 015871 291 LSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAE 332 (399)
Q Consensus 291 ~~kL~~~~~~d~~lk~kme~Ms~qi~eyE~LvkQLKeELREE 332 (399)
+-.+++++.+-.+|-+.+..+++=|..+...+...|.++.++
T Consensus 12 I~vVaLlvfGP~KLP~~~r~lGk~ir~~K~~~~~~k~~l~~E 53 (158)
T PRK04098 12 ILVVAIIFLGPDKLPQAMVDIAKFFKAVKKTINDAKSTLDKE 53 (158)
T ss_pred HHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666899999999999999999988887776665
No 139
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=24.06 E-value=3.8e+02 Score=29.34 Aligned_cols=80 Identities=24% Similarity=0.299 Sum_probs=48.7
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhhh----HhhHHhhhhhhhhhhhhhh----hhhhhhhhh-ccccchHHHHHHHHHHHh
Q 015871 57 SEAHNEDKKHIQKLERELMNCSQEI----DYLQDQLNARNEEVYSLSE----HVHSLELKL-VDMEILQDKVGQLEEELR 127 (399)
Q Consensus 57 Sea~~eDk~~Iq~LEkELlNC~QEI----DYLqDQLn~Rn~Evn~l~E----Hih~LElKL-~~~e~l~e~V~~l~eEL~ 127 (399)
|++..+=.--|.+.=.-|-+|-.|+ +-+++-++-=..++++++. |=|++.+|+ ++.....-+|+-+|+||.
T Consensus 386 ~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa 465 (531)
T PF15450_consen 386 SEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELA 465 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHH
Confidence 4444433333344334455666665 3345555533456666654 667888887 567777888999999998
Q ss_pred hccchhHHH
Q 015871 128 RSDSECLLL 136 (399)
Q Consensus 128 rS~Se~~lL 136 (399)
..-|.-=++
T Consensus 466 ~lLssvQ~~ 474 (531)
T PF15450_consen 466 TLLSSVQLL 474 (531)
T ss_pred HHHHHHHHh
Confidence 866554444
No 140
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=23.72 E-value=3.1e+02 Score=22.59 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=49.7
Q ss_pred HHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhh
Q 015871 71 ERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNS 150 (399)
Q Consensus 71 EkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~S 150 (399)
-+||-.+.++.+=++.+++. |+.+...+++++.+|..|.-..|.+.|-+|.-.++-..++.+-
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~-----------------k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L 64 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADK-----------------KVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKL 64 (96)
T ss_pred chHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35677777777666665543 5667778889999999999999999999888777766665544
Q ss_pred hhhHHH
Q 015871 151 ALHIKK 156 (399)
Q Consensus 151 al~IeK 156 (399)
-..+.|
T Consensus 65 ~~~~~K 70 (96)
T PF08647_consen 65 NTQLSK 70 (96)
T ss_pred HHHHHH
Confidence 444333
No 141
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.62 E-value=2.5e+02 Score=26.24 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=37.9
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccc
Q 015871 185 TCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYET 240 (399)
Q Consensus 185 ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~ 240 (399)
..|+.-.-.....+||.++..-+.+++.+.++++ .+..||.+|++.|.....
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~----~l~~en~~L~~lL~~~~~ 114 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKELLELESRLQELE----QLEAENARLRELLNLKES 114 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCccc
Confidence 4444444455677888888888888888877764 567899999998877543
No 142
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=23.56 E-value=3.2e+02 Score=27.35 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=24.8
Q ss_pred HHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhh
Q 015871 69 KLERELMNCSQEIDYLQDQLNARNEEVYSLSEHV 102 (399)
Q Consensus 69 ~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHi 102 (399)
.|.-|=-++-.+||-|.|.|--.-..+..+-..+
T Consensus 102 QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 102 QLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778899999999998876666665555443
No 143
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=23.46 E-value=27 Score=37.26 Aligned_cols=185 Identities=29% Similarity=0.367 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhhhhhhhhhhh-hHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhh
Q 015871 21 IETRCRELRKEKDTLRESQSQS-FDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLS 99 (399)
Q Consensus 21 i~trc~~lrkek~~lr~sqsqs-~eli~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~ 99 (399)
+..|.-.|.+|-.+|+..|..+ -+-+..| .+.+..| .+...+|+++.....+.|.=|+.|+..-...+-..+
T Consensus 457 l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L---~~~Leda----~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~ 529 (713)
T PF05622_consen 457 LRERLLRLEHENKRLKEKQEESEEEKLEEL---QSQLEDA----NRRKEKLEEENREANEKILELQSQLEELQKSLQEQG 529 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456668999999998776543 1111111 1222222 234568999999988999889888865443322111
Q ss_pred hhhh-hhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhh-hhhHHHHHhhhhccccccccchhhhhh
Q 015871 100 EHVH-SLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNS-ALHIKKLEESISSSALESQCEIESLKI 177 (399)
Q Consensus 100 EHih-~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~S-al~IeKLEESiSS~tLeSQcEIESmKL 177 (399)
--.- +..+| .+|.+.+. .|...+.+.--+-+.++.-+.++..+ ..-|..|++.+ .+-.-
T Consensus 530 ~~~~d~~~lk----~~le~~~~----~l~e~~~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L-----------~~k~~ 590 (713)
T PF05622_consen 530 SKSEDSSELK----QKLEEHLE----KLRELKDELQKKREQLEELEQELNQSLSQKIEELEEAL-----------QKKEE 590 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccHHHHH----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----------HHhHH
Confidence 1110 01111 12222222 22222222222222222222333333 33355555333 23334
Q ss_pred hHHHHHH----HHHHHhhhhhhhHHHHHH-HHHHHHHHHHHhHhHHHHHHHHHHhhHHHH
Q 015871 178 DMIALEQ----TCVEAKKVHKENVQEKAR-MNSLIKELEVRTQDSQEIIECLDKENKELK 232 (399)
Q Consensus 178 D~~aLEQ----~lfdA~k~q~et~~ek~~-m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ 232 (399)
||.+.|. .+=.|+++-. +++.|.+ ...-|.-+..++++-...|..|++++.+.+
T Consensus 591 e~~~~eer~k~~lekak~vi~-~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k 649 (713)
T PF05622_consen 591 EMRAMEERYKKYLEKAKEVIK-TLDPKQNPSSPEIQALKKQLQEKDRRIESLEKELEKSK 649 (713)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHhh-ccChhccCChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5566554 2223444322 4555533 333345566788888899999999887665
No 144
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=23.24 E-value=7.1e+02 Score=24.35 Aligned_cols=130 Identities=22% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHH---HHHhHHHHhhhhhcchhhhhhhhhhhhccc
Q 015871 199 EKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVF---CQKIEEWMEKEDRKQLDIQSLVSELERNFT 275 (399)
Q Consensus 199 ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~---~q~~~e~lE~ed~~~l~~q~~~~~l~~~~~ 275 (399)
+-+.+++-|.-++..+-+||+-..|+-..++++..--+-+++..+++ .++.++.++..+...-..+..--.-.+.
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK-- 82 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK-- 82 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred ccccccchhhhhHHHHHH------------------------HHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 015871 276 VSKETCFCGKVFGALLSK------------------------LALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRA 331 (399)
Q Consensus 276 ~s~~~~~c~~~f~~l~~k------------------------L~~~~~~d~~lk~kme~Ms~qi~eyE~LvkQLKeELRE 331 (399)
|.++...|..+ +.+|-+.-..|..+-+....+-..|+..||-|-+-|++
T Consensus 83 -------~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkE 155 (205)
T KOG1003|consen 83 -------YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKE 155 (205)
T ss_pred -------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q ss_pred Hhhhhh
Q 015871 332 EKFKAK 337 (399)
Q Consensus 332 EKLKAK 337 (399)
--.+|.
T Consensus 156 aE~rAE 161 (205)
T KOG1003|consen 156 AETRAE 161 (205)
T ss_pred hhhhHH
No 145
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=22.76 E-value=2.9e+02 Score=22.85 Aligned_cols=68 Identities=25% Similarity=0.345 Sum_probs=40.7
Q ss_pred hHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhh
Q 015871 81 IDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEES 160 (399)
Q Consensus 81 IDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEES 160 (399)
++|++-++++-..+++-|..=-..--.|..+|++.-.-+..-- ..|..+-.+|+--.-.|..+|.+
T Consensus 9 ~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~--------------~~l~~k~~~l~~~l~~Id~Ie~~ 74 (99)
T PF10046_consen 9 SKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNL--------------EDLNQKYEELQPYLQQIDQIEEQ 74 (99)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999988876655555556555555544444332 33344444455445555555544
Q ss_pred hh
Q 015871 161 IS 162 (399)
Q Consensus 161 iS 162 (399)
|+
T Consensus 75 V~ 76 (99)
T PF10046_consen 75 VT 76 (99)
T ss_pred HH
Confidence 43
No 146
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=22.34 E-value=1.1e+02 Score=35.08 Aligned_cols=49 Identities=33% Similarity=0.443 Sum_probs=36.0
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHH---HHHHHHHHHhhhHHH
Q 015871 310 GMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQ---EMAELRYQMTSLLEE 360 (399)
Q Consensus 310 ~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQ---EMAELRYQmTglLEE 360 (399)
+.++||++|++-+.-|++||+.-+- +++-..+++ =-+-++-|.|++|+.
T Consensus 826 Di~kql~eykvey~vLq~El~~~~~--~~~~~~~~~lE~~~s~~~~q~~~ll~q 877 (948)
T KOG4436|consen 826 DISKQLAEYKVEYHVLQEELTTSSH--LEDLNRIAKLETTNSSLQAQNTDLLEQ 877 (948)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccc--hhhcccccccccchhhhHhhhhhhhhh
Confidence 4799999999999999999999876 444332111 234567888888875
No 147
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=21.93 E-value=2.4e+02 Score=28.73 Aligned_cols=71 Identities=27% Similarity=0.357 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhhhhh-------HhhHHhhhhhhhhhhh-hhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHH
Q 015871 64 KKHIQKLERELMNCSQEI-------DYLQDQLNARNEEVYS-LSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLL 135 (399)
Q Consensus 64 k~~Iq~LEkELlNC~QEI-------DYLqDQLn~Rn~Evn~-l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~l 135 (399)
++.|+.||+++.-|--|. ||.++-.+-=|.|.|+ ||.|-. ++.|.+.|-.+.++|.+-|....-+--+
T Consensus 139 ~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~----rivDIDaLi~ENRyL~erl~q~qeE~~l 214 (319)
T PF09789_consen 139 REQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDEN----RIVDIDALIMENRYLKERLKQLQEEKEL 214 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CcccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 015871 136 LME 138 (399)
Q Consensus 136 Lmq 138 (399)
+.+
T Consensus 215 ~k~ 217 (319)
T PF09789_consen 215 LKQ 217 (319)
T ss_pred HHH
No 148
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=21.79 E-value=4.3e+02 Score=24.68 Aligned_cols=21 Identities=38% Similarity=0.308 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015871 361 ECKRRACIEQASLQRIAELET 381 (399)
Q Consensus 361 EcKRRaCIEQASLQRIaELEA 381 (399)
+-+|++|--....++..+=||
T Consensus 36 ea~~~~~~~~~~~~~~~~~ea 56 (194)
T COG1390 36 EAKREAEEAIEEILRKAEKEA 56 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333
No 149
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=21.34 E-value=5e+02 Score=26.55 Aligned_cols=73 Identities=29% Similarity=0.386 Sum_probs=45.9
Q ss_pred CChHHHHHhHHHHHHHHhhhhhhhhhhhhhhHHHHHHHhhhh---hhhhhhhhhhHHHHHHHHHHhhhhhhhHhhH
Q 015871 13 FDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAK---SLSEAHNEDKKHIQKLERELMNCSQEIDYLQ 85 (399)
Q Consensus 13 ~d~eellqi~trc~~lrkek~~lr~sqsqs~eli~rleL~~~---slSea~~eDk~~Iq~LEkELlNC~QEIDYLq 85 (399)
+|+++++..-...+++..+.|-||.-+..--.-|..+-.... ++-.--.+=++.|..||.++.....+++.+-
T Consensus 25 ~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 25 LDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999877655555544222211 1222222334455666666666555555443
No 150
>PF06583 Neogenin_C: Neogenin C-terminus; InterPro: IPR010560 This entry represents the C terminus of eukaryotic neogenin precursor proteins, which contains several potential phosphorylation sites []. Neogenin is a member of the N-CAM family of cell adhesion molecules (and therefore contains multiple copies of IPR007110 from INTERPRO and IPR003961 from INTERPRO) and is closely related to the DCC tumour suppressor gene product - these proteins may play an integral role in regulating differentiation programmes and/or cell migration events within many adult and embryonic tissues [].; GO: 0016021 integral to membrane; PDB: 3AU4_B.
Probab=21.04 E-value=53 Score=33.20 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=11.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 015871 333 KFKAKEEAEDLAQEMAELRYQM 354 (399)
Q Consensus 333 KLKAKEEAEDLtQEMAELRYQm 354 (399)
.++--=+.|||.||||-|===|
T Consensus 289 ~~~~systeeL~qEMAnLEGLM 310 (319)
T PF06583_consen 289 RLSPSYSTEELNQEMANLEGLM 310 (319)
T ss_dssp ----HHH---HHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHH
Confidence 3344668999999999885433
No 151
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.89 E-value=4.7e+02 Score=23.32 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHh
Q 015871 197 VQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEK 234 (399)
Q Consensus 197 ~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ek 234 (399)
.++++..+.-|++++.++..++..++.|.+|.+.|...
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667788889999999999999999999998887543
No 152
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=20.25 E-value=7e+02 Score=23.16 Aligned_cols=86 Identities=24% Similarity=0.355 Sum_probs=52.0
Q ss_pred ccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh--------HhHHHHHHHHHHhhHHHHHhhhhccc
Q 015871 169 QCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRT--------QDSQEIIECLDKENKELKEKLDSYET 240 (399)
Q Consensus 169 QcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~--------q~Aqe~i~~L~keNkeL~ekl~~se~ 240 (399)
+=++.+++.+--.|+|.+- +++.|--+=.++....|.+++-.. +.-+..-+.|++-..+|-+-+.+++.
T Consensus 99 ek~l~~Lk~e~evL~qr~~---kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nl 175 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFE---KLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANL 175 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456667777777777763 455555555556666666655432 12233445566777777777888777
Q ss_pred hhH---HHHHHhHHHHhhhh
Q 015871 241 NGR---VFCQKIEEWMEKED 257 (399)
Q Consensus 241 n~r---~~~q~~~e~lE~ed 257 (399)
.|. .....+.+.|.++.
T Consensus 176 dp~~~~~v~~~l~~~l~~KN 195 (201)
T PF13851_consen 176 DPAALSQVSKKLEDVLDSKN 195 (201)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 776 33566666665544
No 153
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.23 E-value=6e+02 Score=22.34 Aligned_cols=82 Identities=26% Similarity=0.333 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhH
Q 015871 64 KKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSK 143 (399)
Q Consensus 64 k~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~k 143 (399)
-.-+.+|-..|+-+--||.-|++++..-..+=+.+.+-|-.|--...++.....++..|+.++..-...+-.+++=+-.|
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34456666677777777778888888887777778777777777777777777777778777776666666665555444
Q ss_pred HH
Q 015871 144 EE 145 (399)
Q Consensus 144 E~ 145 (399)
.+
T Consensus 95 ~E 96 (120)
T PF12325_consen 95 SE 96 (120)
T ss_pred HH
Confidence 44
Done!