Query 015871
Match_columns 399
No_of_seqs 14 out of 16
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 03:58:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 96.9 0.0022 7.7E-08 68.4 8.5 47 309-355 1112-1161(1184)
2 1i84_S Smooth muscle myosin he 93.1 0.17 5.8E-06 54.3 7.6 15 337-351 1150-1164(1184)
3 2ocy_A RAB guanine nucleotide 83.9 22 0.00075 31.3 13.9 60 178-237 87-147 (154)
4 3qh9_A Liprin-beta-2; coiled-c 83.5 2.7 9.4E-05 34.1 6.3 51 338-388 19-75 (81)
5 3iv1_A Tumor susceptibility ge 75.5 4.9 0.00017 32.2 5.4 55 167-235 22-76 (78)
6 2efr_A General control protein 74.8 43 0.0015 29.3 15.5 97 136-243 26-122 (155)
7 2dfs_A Myosin-5A; myosin-V, in 72.0 70 0.0024 34.8 14.8 46 305-357 997-1042(1080)
8 1ci6_A Transcription factor AT 68.2 8.5 0.00029 28.8 4.9 57 46-102 4-60 (63)
9 3oja_B Anopheles plasmodium-re 66.1 72 0.0025 30.4 12.1 40 198-237 544-583 (597)
10 1t2k_D Cyclic-AMP-dependent tr 65.8 17 0.0006 26.5 6.1 53 47-99 4-56 (61)
11 2e7s_A RAB guanine nucleotide 65.0 13 0.00044 32.3 6.1 57 178-234 75-132 (135)
12 3oja_B Anopheles plasmodium-re 64.9 32 0.0011 32.8 9.4 19 219-237 537-555 (597)
13 1x8y_A Lamin A/C; structural p 64.5 27 0.00094 27.3 7.4 60 169-231 2-61 (86)
14 3i00_A HIP-I, huntingtin-inter 62.3 9.8 0.00033 32.1 4.8 59 161-219 31-89 (120)
15 3ghg_A Fibrinogen alpha chain; 60.4 16 0.00054 38.0 6.8 71 304-383 69-140 (562)
16 1gk4_A Vimentin; intermediate 58.0 45 0.0015 25.8 7.6 59 170-231 1-59 (84)
17 1dh3_A Transcription factor CR 53.7 27 0.00094 25.5 5.4 45 46-90 3-47 (55)
18 3m0d_C TNF receptor-associated 53.4 68 0.0023 23.9 7.8 54 179-232 8-61 (65)
19 2wt7_A Proto-oncogene protein 51.9 42 0.0015 24.7 6.2 52 47-98 5-56 (63)
20 3na7_A HP0958; flagellar bioge 51.8 1.3E+02 0.0045 26.8 18.5 43 70-112 30-72 (256)
21 1jnm_A Proto-oncogene C-JUN; B 51.4 35 0.0012 25.0 5.6 53 47-99 4-56 (62)
22 3tnu_B Keratin, type II cytosk 51.3 97 0.0033 25.3 8.9 59 170-231 50-108 (129)
23 3na7_A HP0958; flagellar bioge 51.2 1.3E+02 0.0046 26.7 20.4 60 178-237 12-71 (256)
24 3brv_B NF-kappa-B essential mo 50.9 14 0.00047 29.4 3.6 44 215-258 4-47 (70)
25 2b9c_A Striated-muscle alpha t 47.5 89 0.003 26.8 8.4 70 179-248 54-123 (147)
26 3tnu_A Keratin, type I cytoske 46.7 1.1E+02 0.0038 25.1 8.6 59 170-231 52-110 (131)
27 3hnw_A Uncharacterized protein 46.6 85 0.0029 26.6 8.1 55 187-241 71-125 (138)
28 2l2l_A Transcriptional repress 41.6 23 0.00079 25.9 3.3 18 316-333 4-21 (43)
29 3bas_A Myosin heavy chain, str 38.6 1.4E+02 0.0048 23.3 8.3 59 179-237 23-81 (89)
30 3lay_A Zinc resistance-associa 38.1 96 0.0033 27.3 7.3 18 338-355 113-130 (175)
31 2dfs_A Myosin-5A; myosin-V, in 36.8 2.6E+02 0.0087 30.5 11.7 9 67-75 923-931 (1080)
32 3tnu_B Keratin, type II cytosk 36.4 98 0.0034 25.3 6.7 89 113-211 18-106 (129)
33 3s9g_A Protein hexim1; cyclin 35.4 1.8E+02 0.006 24.6 8.1 50 306-385 25-76 (104)
34 1ez3_A Syntaxin-1A; three heli 34.3 1.6E+02 0.0056 22.8 7.7 61 171-231 13-80 (127)
35 3tnu_A Keratin, type I cytoske 33.8 91 0.0031 25.6 6.2 90 112-211 19-108 (131)
36 3i00_A HIP-I, huntingtin-inter 31.4 99 0.0034 25.9 6.1 46 311-356 38-86 (120)
37 3cve_A Homer protein homolog 1 31.1 1.8E+02 0.0061 22.9 7.0 44 194-237 10-53 (72)
38 3u59_A Tropomyosin beta chain; 31.0 2E+02 0.0067 22.7 10.5 53 304-361 7-59 (101)
39 3cvf_A Homer-3, homer protein 30.2 2.1E+02 0.0071 22.8 7.4 57 194-250 16-72 (79)
40 1deq_A Fibrinogen (alpha chain 29.4 3.3E+02 0.011 27.3 10.3 8 361-368 158-165 (390)
41 2jee_A YIIU; FTSZ, septum, coi 28.7 1.4E+02 0.0049 23.9 6.2 34 205-238 6-39 (81)
42 3he4_B Synzip5; heterodimeric 27.9 33 0.0011 25.1 2.2 16 88-103 15-30 (46)
43 3mq9_A Bone marrow stromal ant 27.0 3.9E+02 0.013 24.9 11.5 68 112-195 375-442 (471)
44 3a7p_A Autophagy protein 16; c 26.7 2.8E+02 0.0095 24.6 8.3 63 171-237 69-135 (152)
45 2eqb_B RAB guanine nucleotide 26.2 2.8E+02 0.0095 22.9 10.5 31 112-142 7-37 (97)
46 2q6q_A Spindle POLE BODY compo 26.0 2.3E+02 0.0078 22.7 6.9 56 207-273 5-60 (74)
47 3hnw_A Uncharacterized protein 25.2 3.1E+02 0.011 23.1 9.1 49 305-357 74-122 (138)
48 4afl_A P29ING4, inhibitor of g 24.4 2.5E+02 0.0086 21.8 8.5 85 110-210 11-95 (104)
49 3u1c_A Tropomyosin alpha-1 cha 22.5 2.9E+02 0.01 21.9 8.7 55 304-363 7-61 (101)
50 3qne_A Seryl-tRNA synthetase, 21.9 2E+02 0.0068 29.0 7.3 78 299-398 26-109 (485)
51 1wlq_A Geminin; coiled-coil; 2 21.9 1.1E+02 0.0037 24.9 4.4 37 194-237 34-70 (83)
52 3trt_A Vimentin; cytoskeleton, 21.4 2.5E+02 0.0085 20.7 8.3 53 301-356 4-67 (77)
53 1h3l_A RNA polymerase sigma fa 21.3 39 0.0013 24.1 1.5 15 334-348 33-47 (87)
54 2v71_A Nuclear distribution pr 20.4 4.7E+02 0.016 23.5 16.0 26 326-351 156-181 (189)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.85 E-value=0.0022 Score=68.42 Aligned_cols=47 Identities=30% Similarity=0.466 Sum_probs=0.0
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHh
Q 015871 309 KGMSLQICEYELLVKQLKEELRAEKF---KAKEEAEDLAQEMAELRYQMT 355 (399)
Q Consensus 309 e~Ms~qi~eyE~LvkQLKeELREEKL---KAKEEAEDLtQEMAELRYQmT 355 (399)
..+..++.+.+.-++.|.++|.+++. +...+-.+|..++.+|+-+|.
T Consensus 1112 ~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ie 1161 (1184)
T 1i84_S 1112 NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELE 1161 (1184)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544322 222233455555555555443
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.10 E-value=0.17 Score=54.26 Aligned_cols=15 Identities=33% Similarity=0.415 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH
Q 015871 337 KEEAEDLAQEMAELR 351 (399)
Q Consensus 337 KEEAEDLtQEMAELR 351 (399)
..+-++|.+.+.++.
T Consensus 1150 ~~ele~L~~~Ieel~ 1164 (1184)
T 1i84_S 1150 SEELEALKTELEDTL 1164 (1184)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444443
No 3
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.94 E-value=22 Score=31.34 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=47.7
Q ss_pred hHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871 178 DMIALEQTCVE-AKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 178 D~~aLEQ~lfd-A~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
.+-.|=.+||+ |.+.--..-.+.+....-+..|+.++.++...|+.+..+...|+.-+-.
T Consensus 87 ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~ 147 (154)
T 2ocy_A 87 EVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHS 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678895 6666666666777788888899999999999999999999999876544
No 4
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=83.53 E-value=2.7 Score=34.12 Aligned_cols=51 Identities=31% Similarity=0.372 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHhhh----HHHHHHHHHH-HHHHHHHHHH-HHHHHHHhhcc
Q 015871 338 EEAEDLAQEMAELRYQMTSL----LEEECKRRAC-IEQASLQRIA-ELETQIEKGQN 388 (399)
Q Consensus 338 EEAEDLtQEMAELRYQmTgl----LEEEcKRRaC-IEQASLQRIa-ELEAQi~ke~~ 388 (399)
-+||||.|||.+|||.+|.| +--|-|-+|- -|-|+||+.- .=+|-|++-|.
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 46889999999999999987 3335666666 6788888743 33555554443
No 5
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=75.51 E-value=4.9 Score=32.25 Aligned_cols=55 Identities=22% Similarity=0.444 Sum_probs=46.6
Q ss_pred ccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhh
Q 015871 167 ESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKL 235 (399)
Q Consensus 167 eSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl 235 (399)
-.||||+|++ +.+++--.-+.+++.+|..++-.-.+.+++|+.|...+++|..-+
T Consensus 22 q~qaEl~sLr--------------rT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 22 RAQAELNALK--------------RTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhHHHHHHH--------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688888875 566666777889999999999999999999999999999997644
No 6
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=74.79 E-value=43 Score=29.33 Aligned_cols=97 Identities=22% Similarity=0.256 Sum_probs=69.0
Q ss_pred HHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhH
Q 015871 136 LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQ 215 (399)
Q Consensus 136 LmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q 215 (399)
+=.+|++.|..+..+-..|..||+.+-.++ .+| -.||-+--.|-.--+.--..-..+...+++.+..-.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~-------~nl----KsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE 94 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVT-------NNL----KSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 94 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhh----ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999998877666 233 346665554443333333334455666677777777
Q ss_pred hHHHHHHHHHHhhHHHHHhhhhccchhH
Q 015871 216 DSQEIIECLDKENKELKEKLDSYETNGR 243 (399)
Q Consensus 216 ~Aqe~i~~L~keNkeL~ekl~~se~n~r 243 (399)
.|...+.-|++.+..|.+.|.....+.+
T Consensus 95 ~AERsv~kLEk~id~lEd~L~~~Kek~~ 122 (155)
T 2efr_A 95 FAERSVTKLEKSIDDLEDELYAQKLKYK 122 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999988644444
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.02 E-value=70 Score=34.81 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=23.9
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh
Q 015871 305 KEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSL 357 (399)
Q Consensus 305 k~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTgl 357 (399)
++.+.+..+.....+.-+.+++++|. +....|..|-+.||-|+..+
T Consensus 997 ~~~~~~~~ke~~~lee~~~~~~~~L~-------~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 997 RKELHQTQTEKKTIEEWADKYKHETE-------QLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555554 33445666666666666554
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.19 E-value=8.5 Score=28.76 Aligned_cols=57 Identities=12% Similarity=0.261 Sum_probs=46.3
Q ss_pred HHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhh
Q 015871 46 IKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHV 102 (399)
Q Consensus 46 i~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHi 102 (399)
+++.+-+..|++..+..-+.+++.|+.+.-.=.++.+.|..+++---.|+.+|-.-|
T Consensus 4 ~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 4 LKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999999988887777777765443
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.11 E-value=72 Score=30.40 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871 198 QEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 198 ~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
.+..+|+..+++-+.++.+.+.-+..+..+.++|.++++.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555666666666666666666666777777788777765
No 10
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=65.77 E-value=17 Score=26.47 Aligned_cols=53 Identities=26% Similarity=0.255 Sum_probs=42.5
Q ss_pred HHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhh
Q 015871 47 KRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLS 99 (399)
Q Consensus 47 ~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~ 99 (399)
++++=+.-|++.++..-+.||+.||.+.-....+.+-|+.+++.=-.|+..|-
T Consensus 4 ~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 4 KFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888999999999999999999999999998888876665555544443
No 11
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.97 E-value=13 Score=32.33 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=35.0
Q ss_pred hHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHh
Q 015871 178 DMIALEQTCVE-AKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEK 234 (399)
Q Consensus 178 D~~aLEQ~lfd-A~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ek 234 (399)
.+-.|=.+||+ |.+.--..-.+.+....-+..|+-++.++..+|+.+..+..+|+--
T Consensus 75 ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 75 EVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678995 6776666677778888888999999999999999999998888753
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.90 E-value=32 Score=32.80 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=7.9
Q ss_pred HHHHHHHHhhHHHHHhhhh
Q 015871 219 EIIECLDKENKELKEKLDS 237 (399)
Q Consensus 219 e~i~~L~keNkeL~ekl~~ 237 (399)
+..+.+++++.+++.++..
T Consensus 537 ~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhh
Confidence 3334444444444444433
No 13
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=64.45 E-value=27 Score=27.27 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=35.7
Q ss_pred ccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHH
Q 015871 169 QCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKEL 231 (399)
Q Consensus 169 QcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL 231 (399)
+|||+++|--..+||.++-++..-. ..+-..+...|..++.+++.+..-+.+...+..+|
T Consensus 2 ~~eie~L~~q~~~Le~~l~e~E~~~---~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~L 61 (86)
T 1x8y_A 2 SCQLSQLQCQLAAKEAKLRDLEDSL---ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQEL 61 (86)
T ss_dssp ----------CTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999998887633 23455667777778888888777776665555555
No 14
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=62.25 E-value=9.8 Score=32.06 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=46.7
Q ss_pred hhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHH
Q 015871 161 ISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQE 219 (399)
Q Consensus 161 iSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe 219 (399)
+.++..++|+.|..|+==+..||.-|-..++--+.+..++..+..-+..++.+.+++..
T Consensus 31 le~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~ 89 (120)
T 3i00_A 31 LENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEK 89 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34778899999999999999999999999988888899999888877777555554433
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.43 E-value=16 Score=38.02 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=46.1
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015871 304 LKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMA-ELRYQMTSLLEEECKRRACIEQASLQRIAELETQ 382 (399)
Q Consensus 304 lk~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMA-ELRYQmTglLEEEcKRRaCIEQASLQRIaELEAQ 382 (399)
||..++++++-...-+.+++++++.||..--.++ +-+....|++ |||+++.-| +++. ..|. ++|+-|++.
T Consensus 69 LKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyL-KekV-----dnQl--snIrvLQsn 139 (562)
T 3ghg_A 69 LKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVL-KRKV-----IEKV--QHIQLLQKN 139 (562)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHH-HHHH-----HHHH--HHHHHHHHH
T ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHH-HHHH-----HHHH--HHHHHHHHH
Confidence 3444444544444556678999999986555555 6677888888 999998754 3333 3444 666666655
Q ss_pred H
Q 015871 383 I 383 (399)
Q Consensus 383 i 383 (399)
|
T Consensus 140 L 140 (562)
T 3ghg_A 140 V 140 (562)
T ss_dssp H
T ss_pred H
Confidence 5
No 16
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=57.95 E-value=45 Score=25.80 Aligned_cols=59 Identities=25% Similarity=0.299 Sum_probs=42.7
Q ss_pred cchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHH
Q 015871 170 CEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKEL 231 (399)
Q Consensus 170 cEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL 231 (399)
|||+|+|-=-.+||.++-|+..-... +-..+...|..++.+++.+..-+.+...+..+|
T Consensus 1 ~el~~l~~~~~sLE~~l~e~e~~~~~---~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~L 59 (84)
T 1gk4_A 1 CEVDALKGTNESLERQMREMEENFAV---EAANYQDTIGRLQDEIQNMKEEMARHLREYQDL 59 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899998889999999888765433 335566777778888887777776665555554
No 17
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=53.73 E-value=27 Score=25.51 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=36.5
Q ss_pred HHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhh
Q 015871 46 IKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNA 90 (399)
Q Consensus 46 i~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~ 90 (399)
.+|+.-+--|+..++..-+.|+..||..+-.-..|-.-|..+++.
T Consensus 3 ~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 3 EVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888999999999999999999988777777777766553
No 18
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=53.43 E-value=68 Score=23.95 Aligned_cols=54 Identities=17% Similarity=0.073 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHH
Q 015871 179 MIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELK 232 (399)
Q Consensus 179 ~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ 232 (399)
++.||+.+++..++-..-..+-++....+..+.-|....+++|+.|+-....+.
T Consensus 8 ~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 8 LAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 456788888777766643335555666666665677777888887766555443
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=51.90 E-value=42 Score=24.73 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=40.1
Q ss_pred HHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhh
Q 015871 47 KRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSL 98 (399)
Q Consensus 47 ~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l 98 (399)
+|++=+.-|++.++..-+.+|+.|+.+.-.=..+-+-|+.+++.=..|+..|
T Consensus 5 rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 5 IRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888899999999999999999998877777777777665444444433
No 20
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=51.80 E-value=1.3e+02 Score=26.78 Aligned_cols=43 Identities=19% Similarity=0.164 Sum_probs=25.8
Q ss_pred HHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccc
Q 015871 70 LERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDM 112 (399)
Q Consensus 70 LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~ 112 (399)
|-.||-..-.++.-+++++..-..++..+..-+..+|..+.+.
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~ 72 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT 72 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666666666666666666555443
No 21
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.36 E-value=35 Score=25.01 Aligned_cols=53 Identities=17% Similarity=0.195 Sum_probs=42.8
Q ss_pred HHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhh
Q 015871 47 KRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLS 99 (399)
Q Consensus 47 ~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~ 99 (399)
+|-+=|.-|++.++..-+.+|+.||.+.-....+-+-|..+++.=..|+..|-
T Consensus 4 rrr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 4 RKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555778899999999999999999999999999888887776666665553
No 22
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.33 E-value=97 Score=25.29 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=42.9
Q ss_pred cchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHH
Q 015871 170 CEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKEL 231 (399)
Q Consensus 170 cEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL 231 (399)
+||+|++---.+||.++-|+..-... +-..+...|..++.+++.+..-+.+...+..+|
T Consensus 50 ~el~~l~~~~~~LE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 50 AEIDNVKKQCANLQNAIADAEQRGEL---ALKDARNKLAELEEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 67888888888999999888765443 334566777888888888877777766665555
No 23
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=51.18 E-value=1.3e+02 Score=26.71 Aligned_cols=60 Identities=8% Similarity=0.052 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871 178 DMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 178 D~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
|+-.+...+..-....++-..+-+.+..-+..++.++..++.-++.++.+.+.+...+..
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~ 71 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333344444455555555555555555555555555555444443
No 24
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=50.93 E-value=14 Score=29.43 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=35.3
Q ss_pred HhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhhhhh
Q 015871 215 QDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDR 258 (399)
Q Consensus 215 q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~~e~lE~ed~ 258 (399)
|.+.+++..|-.+|.+||+-+.-+|..-|.=+.....|.++.-+
T Consensus 4 ~~~~e~~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQke 47 (70)
T 3brv_B 4 QGAPETLQRCLEENQELRDAIRQSNQILRERCEELLHFQASQRE 47 (70)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 67888999999999999999999999999888888888876544
No 25
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=47.49 E-value=89 Score=26.80 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHH
Q 015871 179 MIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQK 248 (399)
Q Consensus 179 ~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~ 248 (399)
|..||..|=+|+.+.+++-.--+-..+-+.-++..+..|.+-.+..+..+++|.+-|..-..|.+.+-.+
T Consensus 54 ~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ 123 (147)
T 2b9c_A 54 MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDK 123 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 4568999999999999988888888888999999999999999999999999999999887787765333
No 26
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=46.73 E-value=1.1e+02 Score=25.07 Aligned_cols=59 Identities=22% Similarity=0.153 Sum_probs=41.3
Q ss_pred cchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHH
Q 015871 170 CEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKEL 231 (399)
Q Consensus 170 cEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL 231 (399)
+||+|++---.+||.++-|+..-... +-..+...|..++.+++.+..-+.+...+..+|
T Consensus 52 ~el~~l~~~~~sLE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~L 110 (131)
T 3tnu_A 52 IELQSQLSMKASLENSLEETKGRYCM---QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKIL 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778877778888888888764433 234566777778888888777777666555555
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=46.62 E-value=85 Score=26.59 Aligned_cols=55 Identities=27% Similarity=0.287 Sum_probs=26.6
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccch
Q 015871 187 VEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETN 241 (399)
Q Consensus 187 fdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n 241 (399)
|.++.-.+.-.++...+..-+..|.-.+-.++.-++.+.+++.+|++++..-..+
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444555555555555555555555555555544333
No 28
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=41.63 E-value=23 Score=25.92 Aligned_cols=18 Identities=61% Similarity=0.717 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 015871 316 CEYELLVKQLKEELRAEK 333 (399)
Q Consensus 316 ~eyE~LvkQLKeELREEK 333 (399)
.+-+-+|++|++|||-|-
T Consensus 4 ~ere~~i~~LreeLR~EE 21 (43)
T 2l2l_A 4 EERERMIKQLKEELRLEE 21 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467889999999999764
No 29
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=38.64 E-value=1.4e+02 Score=23.31 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871 179 MIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 179 ~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
+..|.-.+-...+.-.+--..+..+..-...|+.|+.+|++....|.+...+|..++.-
T Consensus 23 l~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~e 81 (89)
T 3bas_A 23 MDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVAR 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344334444555555556666899999999998888888877654
No 30
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=38.06 E-value=96 Score=27.34 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 015871 338 EEAEDLAQEMAELRYQMT 355 (399)
Q Consensus 338 EEAEDLtQEMAELRYQmT 355 (399)
..+..|++||++||-++.
T Consensus 113 akI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778888888877664
No 31
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.80 E-value=2.6e+02 Score=30.52 Aligned_cols=9 Identities=33% Similarity=0.409 Sum_probs=0.0
Q ss_pred HHHHHHHHh
Q 015871 67 IQKLERELM 75 (399)
Q Consensus 67 Iq~LEkELl 75 (399)
.++||..+.
T Consensus 923 ~~~LE~kl~ 931 (1080)
T 2dfs_A 923 HIGLENKIM 931 (1080)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 344444443
No 32
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.40 E-value=98 Score=25.27 Aligned_cols=89 Identities=20% Similarity=0.322 Sum_probs=44.4
Q ss_pred cchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhh
Q 015871 113 EILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKV 192 (399)
Q Consensus 113 e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~ 192 (399)
+.+...|+.-.+.|..++++--=+=.-+++.+.+|+.---....||.+|..+--....++..+.--+..||..|-.+
T Consensus 18 eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~--- 94 (129)
T 3tnu_B 18 EELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKA--- 94 (129)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---
Confidence 34555555555666666665444444455666777666666677777776555445555666666666677666444
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 015871 193 HKENVQEKARMNSLIKELE 211 (399)
Q Consensus 193 q~et~~ek~~m~~~i~Elq 211 (399)
++.|...+.||+
T Consensus 95 -------r~e~~~ql~EYq 106 (129)
T 3tnu_B 95 -------KQDMARLLREYQ 106 (129)
T ss_dssp -------HHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHH
Confidence 455666666665
No 33
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=35.37 E-value=1.8e+02 Score=24.62 Aligned_cols=50 Identities=34% Similarity=0.463 Sum_probs=29.0
Q ss_pred HHHHhHHHH--HhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015871 306 EKIKGMSLQ--ICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQI 383 (399)
Q Consensus 306 ~kme~Ms~q--i~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQASLQRIaELEAQi 383 (399)
+.+.+|||+ |++|=.|-+.+ +.+..|..-||.+ ...+-.||.+|++.|
T Consensus 25 ErL~~mSKqELIqEYl~LE~~~---------------s~le~e~~rlr~~---------------~~~~~~~v~eLe~ev 74 (104)
T 3s9g_A 25 ESLQNMSKQELIKEYLELEKSL---------------SRMEDENNRLRLE---------------SKRLDARVRELELEL 74 (104)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHH---------------hccchhhHHHHHHHH
Confidence 678899988 56665544332 2233344444443 233357888888877
Q ss_pred Hh
Q 015871 384 EK 385 (399)
Q Consensus 384 ~k 385 (399)
.+
T Consensus 75 er 76 (104)
T 3s9g_A 75 DR 76 (104)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 34
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=34.33 E-value=1.6e+02 Score=22.83 Aligned_cols=61 Identities=10% Similarity=0.259 Sum_probs=41.4
Q ss_pred chhhhhhhHHHHHHHHHHHhhhhhhhHH-------HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHH
Q 015871 171 EIESLKIDMIALEQTCVEAKKVHKENVQ-------EKARMNSLIKELEVRTQDSQEIIECLDKENKEL 231 (399)
Q Consensus 171 EIESmKLD~~aLEQ~lfdA~k~q~et~~-------ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL 231 (399)
+|+.++-+|..|.+.+-.-++.+...+. -+.+|+.++.+........+.-|+.|+..|..+
T Consensus 13 ~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~ 80 (127)
T 1ez3_A 13 QVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE 80 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777777766666666655442 456777777777777777777777777777654
No 35
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.76 E-value=91 Score=25.58 Aligned_cols=90 Identities=18% Similarity=0.168 Sum_probs=42.4
Q ss_pred ccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhh
Q 015871 112 MEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKK 191 (399)
Q Consensus 112 ~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k 191 (399)
++.+...|+.-.+.|..++++--=+=.-+++.+.+++.---....||.+|..+--....++..+.--+..||..|-.+
T Consensus 19 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~-- 96 (131)
T 3tnu_A 19 TEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQL-- 96 (131)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344555566666666666666444444556666777666566677787776665555556666666667777666544
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 015871 192 VHKENVQEKARMNSLIKELE 211 (399)
Q Consensus 192 ~q~et~~ek~~m~~~i~Elq 211 (399)
++.|...+.||+
T Consensus 97 --------r~em~~ql~EYq 108 (131)
T 3tnu_A 97 --------RCEMEQQNQEYK 108 (131)
T ss_dssp --------HHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHH
Confidence 345666666665
No 36
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.42 E-value=99 Score=25.94 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=37.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHhh
Q 015871 311 MSLQICEYELLVKQLKEELRAE---KFKAKEEAEDLAQEMAELRYQMTS 356 (399)
Q Consensus 311 Ms~qi~eyE~LvkQLKeELREE---KLKAKEEAEDLtQEMAELRYQmTg 356 (399)
-.+-|.+|+.-|.+|.-||-+. |-+|..|.++|-.|++.||-+.+.
T Consensus 38 ~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~ 86 (120)
T 3i00_A 38 SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQRED 86 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456778888888888888774 678999999999999999877763
No 37
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=31.05 E-value=1.8e+02 Score=22.87 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871 194 KENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 194 ~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
+++-..|..|.+-|..++.++.+++.-=..+..+.+.+.+-|++
T Consensus 10 q~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~ 53 (72)
T 3cve_A 10 QEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDG 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556788999999999999999999999999999999999988
No 38
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=30.96 E-value=2e+02 Score=22.71 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=39.2
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHH
Q 015871 304 LKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEE 361 (399)
Q Consensus 304 lk~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTglLEEE 361 (399)
+|.||..|-.....+.+-+.++...++. +...++.+-+|++.|..+|.+ ||.+
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~----~e~~~~~~E~ei~sL~kKiq~-lE~e 59 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQ----AEDRCKQLEEEQQGLQKKLKG-TEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHH-HHHH
Confidence 5788888888888888888877776665 345567788899999998864 4444
No 39
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=30.23 E-value=2.1e+02 Score=22.80 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhH
Q 015871 194 KENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIE 250 (399)
Q Consensus 194 ~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~~ 250 (399)
++.-..|..|.+-|..++.++.+++.-=..+..|.+.+.+.|++.=.....|+|.+.
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345567889999999999999999999999999999999999983333334455443
No 40
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.39 E-value=3.3e+02 Score=27.28 Aligned_cols=8 Identities=38% Similarity=0.733 Sum_probs=6.3
Q ss_pred HHHHHHHH
Q 015871 361 ECKRRACI 368 (399)
Q Consensus 361 EcKRRaCI 368 (399)
+++||+|-
T Consensus 158 d~c~~~C~ 165 (390)
T 1deq_A 158 DIKIRSCK 165 (390)
T ss_pred HHHhcccc
Confidence 78888884
No 41
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.67 E-value=1.4e+02 Score=23.94 Aligned_cols=34 Identities=35% Similarity=0.468 Sum_probs=29.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 015871 205 SLIKELEVRTQDSQEIIECLDKENKELKEKLDSY 238 (399)
Q Consensus 205 ~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~s 238 (399)
.++..|+-.+|.|=.+|.-|..++.+|+++-.+.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999986663
No 42
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=27.87 E-value=33 Score=25.08 Aligned_cols=16 Identities=44% Similarity=0.702 Sum_probs=13.0
Q ss_pred hhhhhhhhhhhhhhhh
Q 015871 88 LNARNEEVYSLSEHVH 103 (399)
Q Consensus 88 Ln~Rn~Evn~l~EHih 103 (399)
|.-||+|...|.||+.
T Consensus 15 leernaelknlkehlk 30 (46)
T 3he4_B 15 LEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHhHHHHHH
Confidence 3469999999999974
No 43
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.98 E-value=3.9e+02 Score=24.89 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=42.6
Q ss_pred ccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhh
Q 015871 112 MEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKK 191 (399)
Q Consensus 112 ~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k 191 (399)
+.++.++++.+-++++... +|.=.-++|+.+=.++|+...++++=- + +-.+-+++|- .-.|+++
T Consensus 375 l~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-----~~~~~~~~~~-~~~~~~~ 438 (471)
T 3mq9_A 375 LKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQA---------A-----TANHTVMALM-ASLDAEK 438 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---------H-----HHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHh---------h-----hcchhHHHHH-HHHHHHH
Confidence 4455555555555554433 566666778888888999888888754 1 2234566774 4457777
Q ss_pred hhhh
Q 015871 192 VHKE 195 (399)
Q Consensus 192 ~q~e 195 (399)
-|++
T Consensus 439 ~~~~ 442 (471)
T 3mq9_A 439 AQGQ 442 (471)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 44
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=26.69 E-value=2.8e+02 Score=24.55 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=43.0
Q ss_pred chhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH----HHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871 171 EIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLI----KELEVRTQDSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 171 EIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i----~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
.|.+++-..+.|++.+-+= ++.+.+|++....+ .-++.++--++.-...|.+||++|=+++-.
T Consensus 69 ~I~~L~~El~~l~~ki~dL----eeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRL----KEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777553 34555555544443 457777888888888899999888665543
No 45
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.21 E-value=2.8e+02 Score=22.93 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=18.4
Q ss_pred ccchHHHHHHHHHHHhhccchhHHHHHHhhh
Q 015871 112 MEILQDKVGQLEEELRRSDSECLLLMEELQS 142 (399)
Q Consensus 112 ~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~ 142 (399)
.+++.+++.+|..++..-+.++--|.++|..
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~e 37 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAK 37 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4556666666666666655555556655543
No 46
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=25.98 E-value=2.3e+02 Score=22.70 Aligned_cols=56 Identities=32% Similarity=0.445 Sum_probs=40.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhhhhhcchhhhhhhhhhhhc
Q 015871 207 IKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERN 273 (399)
Q Consensus 207 i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~~e~lE~ed~~~l~~q~~~~~l~~~ 273 (399)
=+||..++..-|+-|+-|+.=.-.||.||-.+ -++--+.++.+ .+.|.+.+.++++
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKY----telnKKLe~~~-------~~~q~s~~~l~k~ 60 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKY----VDITKKLEDQN-------LNLQIKISDLEKK 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------HHhhhhhHHHHhh
Confidence 36888999999999999999989999888765 33344444444 5556666667666
No 47
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.15 E-value=3.1e+02 Score=23.13 Aligned_cols=49 Identities=31% Similarity=0.372 Sum_probs=29.7
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh
Q 015871 305 KEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSL 357 (399)
Q Consensus 305 k~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTgl 357 (399)
+...+.+..++.+++.=+.-||.+|- .++...+.+.+|..+|+-.+..+
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~----~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELI----AAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554 45666777777887777766543
No 48
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=24.40 E-value=2.5e+02 Score=21.81 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=50.3
Q ss_pred ccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHH
Q 015871 110 VDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEA 189 (399)
Q Consensus 110 ~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA 189 (399)
...++||.++.+.-.+++.-|..+.-++.+++..= .|.=....|++-+. . . --+..+...+-.|
T Consensus 11 d~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~----------~~~~~~~~~~~~~~-r-~----~~l~~I~~~~~~~ 74 (104)
T 4afl_A 11 DSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLA----------TEYMSSARSLSSEE-K-L----ALLKQIQEAYGKC 74 (104)
T ss_dssp HSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHTCCSCCCHHH-H-H----HHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHCCCCChhh-h-H----HHHHHHHHHHHHH
Confidence 35679999999999999999999888888876532 22211112222111 0 0 1124555666666
Q ss_pred hhhhhhhHHHHHHHHHHHHHH
Q 015871 190 KKVHKENVQEKARMNSLIKEL 210 (399)
Q Consensus 190 ~k~q~et~~ek~~m~~~i~El 210 (399)
+.+++|-++--.+|-.+|.-+
T Consensus 75 ~~l~dEKv~lA~~~~dlvdkh 95 (104)
T 4afl_A 75 KEFGDDKVQLAMQTYEMVDKH 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555555555443
No 49
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.54 E-value=2.9e+02 Score=21.91 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=40.2
Q ss_pred hHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHH
Q 015871 304 LKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECK 363 (399)
Q Consensus 304 lk~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTglLEEEcK 363 (399)
+|.||..|-.....+..-+.++...++. +...++.+-+|++.|...|.+ ||.|.-
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~----~e~~~~~~E~Ei~sL~kk~~~-lE~eld 61 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKA----AEERSKQLEDDIVQLEKQLRV-TEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHH-HHHHHH
Confidence 4678887777777777777777766654 345567788899999888886 465543
No 50
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.93 E-value=2e+02 Score=28.99 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=0.0
Q ss_pred CCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHH------HhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 015871 299 GPDANLKEKIKGMSLQICEYELLVKQLKEELRA------EKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQAS 372 (399)
Q Consensus 299 ~~d~~lk~kme~Ms~qi~eyE~LvkQLKeELRE------EKLKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQAS 372 (399)
+.+..+-+.+-.+-.+-.+...-+.+|+.+..+ ++.|++++|+.|-.||++|+
T Consensus 26 ~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~--------------------- 84 (485)
T 3qne_A 26 GDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLS--------------------- 84 (485)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH---------------------
Q ss_pred HHHHHHHHHHHHhhccccccccCCCC
Q 015871 373 LQRIAELETQIEKGQNKFVATGRHLP 398 (399)
Q Consensus 373 LQRIaELEAQi~ke~~k~~~a~~~~~ 398 (399)
.+|++||+++..-..+....+..+|
T Consensus 85 -~~i~~le~~~~~~~~~~~~~l~~iP 109 (485)
T 3qne_A 85 -NEKKEIIEKEAEADKNLRSKINQVG 109 (485)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCC
No 51
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.93 E-value=1.1e+02 Score=24.90 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871 194 KENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS 237 (399)
Q Consensus 194 ~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~ 237 (399)
.++++||.++-..|..++ +-|..|..+|++|++.-..
T Consensus 34 ~eaL~EN~~Lh~~ie~~~-------eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 34 YEALKENEKLHKEIEQKD-------SEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 456788888877776664 4477888899988876544
No 52
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.39 E-value=2.5e+02 Score=20.68 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=28.7
Q ss_pred CCchHHHHHhHHHHHhhHHHHHHHHHHHH-----------HHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 015871 301 DANLKEKIKGMSLQICEYELLVKQLKEEL-----------RAEKFKAKEEAEDLAQEMAELRYQMTS 356 (399)
Q Consensus 301 d~~lk~kme~Ms~qi~eyE~LvkQLKeEL-----------REEKLKAKEEAEDLtQEMAELRYQmTg 356 (399)
.++|...|.+|= .+||.++.+-+.|+ ...--+--++....-.|+.|||.++.+
T Consensus 4 ~~DL~~il~eiR---aQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~ 67 (77)
T 3trt_A 4 KPDCTAAMRDVR---QQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQS 67 (77)
T ss_dssp CCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344556665553 35777766665554 333333334444445677777777654
No 53
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=21.33 E-value=39 Score=24.07 Aligned_cols=15 Identities=40% Similarity=0.459 Sum_probs=12.0
Q ss_pred hhhhhHHHHHHHHHH
Q 015871 334 FKAKEEAEDLAQEMA 348 (399)
Q Consensus 334 LKAKEEAEDLtQEMA 348 (399)
+.-.++|||++||.-
T Consensus 33 ~~~~~~aeD~vQe~f 47 (87)
T 1h3l_A 33 TRNPADAEDLVQETY 47 (87)
T ss_dssp HSCHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHH
Confidence 346789999999964
No 54
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.44 E-value=4.7e+02 Score=23.53 Aligned_cols=26 Identities=42% Similarity=0.443 Sum_probs=6.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHH
Q 015871 326 KEELRAEKFKAKEEAEDLAQEMAELR 351 (399)
Q Consensus 326 KeELREEKLKAKEEAEDLtQEMAELR 351 (399)
|+-|+++--..|.|+.||.||++=+.
T Consensus 156 Ke~l~~~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 156 KESLLVSVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp HHHHHCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777777788888999999986543
Done!