BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015872
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 104/251 (41%), Gaps = 31/251 (12%)
Query: 84 TSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPA--------DFLRDWGATVVNAD 135
+ IL++GATG +GR + + +LD G+ LVR A + + + GA +V+
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGS 64
Query: 136 LSKPETIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNC 195
+ ++ + V VI + + E +V +I+ K +G K F S
Sbjct: 65 IDDHASLVEAVKNVDVVIST--------VGSLQIESQVNIIKAIKEVGTVKRFFPSEFGN 116
Query: 196 D------KHPEVPLMEIKYCTEQFLQDSGLPHVIIR---LCG-FMQGL--IGQYAVPILE 243
D P + E+K + ++ G+P+ + G F++ L G A P
Sbjct: 117 DVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPP--R 174
Query: 244 EKSVWGTDALTRIAYMDTQDIARLTFVALRNEKINGRTLTFSGP-RAWTTQEVITLCERL 302
+K V D R+ ++ +DI T A+ + + +TL P + E++ L E+
Sbjct: 175 DKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKK 234
Query: 303 AGQDANVTMVP 313
+ VP
Sbjct: 235 IDKTLEKAYVP 245
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 102/251 (40%), Gaps = 32/251 (12%)
Query: 84 TSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPA---------DFLRDWGATVVNA 134
IL++G TG +GR IV ++ G LVR A D + G ++
Sbjct: 3 NKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEG 62
Query: 135 DLSKPETIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIH- 193
D++ ET+ + V VI CA GR + E +V +I+ K G K F S
Sbjct: 63 DINDHETLVKAIKQVDIVI-CAAGR-------LLIEDQVKIIKAIKEAGNVKKFFPSEFG 114
Query: 194 -NCDKHPEVP----LMEIKYCTEQFLQDSGLPHVIIRLC------GFMQGLIGQYAVPIL 242
+ D+H V + E K + ++ G+P+ LC F++ L A
Sbjct: 115 LDVDRHDAVEPVRQVFEEKASIRRVIEAEGVPYTY--LCCHAFTGYFLRNLAQLDATDPP 172
Query: 243 EEKSVWGTDALTRIAYMDTQDIARLTFVALRNEKINGRTLTFSGPRAWTTQ-EVITLCER 301
+K V D + AY+ D+ T A + + + P+ + TQ EVI L E+
Sbjct: 173 RDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEK 232
Query: 302 LAGQDANVTMV 312
G+ T V
Sbjct: 233 KIGKTLEKTYV 243
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 15/121 (12%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPA---PADFLRDW-GAT----VVNADLS 137
+ V G TG LG I++ L+ GY V +R P FL + GA+ NADLS
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLS 63
Query: 138 KPETIPATLVG----VHTV--IDCATGRPEEPIKKVDWEGKVALIQ-CAKAMGIQKYVFY 190
P++ A + G HT ID A PEE + K +G + +++ C + ++++++
Sbjct: 64 NPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYT 123
Query: 191 S 191
S
Sbjct: 124 S 124
>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1XQ6|B Chain B, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1YBM|A Chain A, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|1YBM|B Chain B, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|2Q46|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q46|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q4B|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
pdb|2Q4B|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
Length = 253
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 100/240 (41%), Gaps = 40/240 (16%)
Query: 85 SILVVGATGTLGRQIVRRALDEGYD---VRCLVRPRPAPADFLRDWGATVVNADLSKPET 141
++LV GA+G G QIV + L EG D + LVR + A V D++ ++
Sbjct: 6 TVLVTGASGRTG-QIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGE--ADVFIGDITDADS 62
Query: 142 IPATLVGVHTVIDCAT--------------GRPE------EPIKKVDWEGKVALIQCAKA 181
I G+ ++ + GRPE + ++VDW G+ I AK
Sbjct: 63 INPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKV 122
Query: 182 MGIQKYVFYSIHNCDKHPEVPLMEI--------KYCTEQFLQDSGLPHVIIRLCGFMQGL 233
G+ K++ +P+ PL ++ K EQ+L DSG P+ IIR G +
Sbjct: 123 AGV-KHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKE 181
Query: 234 IGQYAVPILEEKSVWGTDALTRIAYMDTQDIARLTFVALRNEKINGRTLTF-SGPRAWTT 292
G + + ++ + TD T + D+A + AL E+ + S P +T
Sbjct: 182 GGVRELLVGKDDELLQTDTKT----VPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTST 237
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent Quinone
Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 108/262 (41%), Gaps = 13/262 (4%)
Query: 86 ILVVGATGTLGRQIVRRALDE--GYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETIP 143
I + GATG LG ++ + + +VR PA A L G TV AD +
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVR-NPAKAQALAAQGITVRQADYGDEAALT 60
Query: 144 ATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVPL 203
+ L GV ++ ++ E ++ V I AKA G++ + S+ + D P + L
Sbjct: 61 SALQGVEKLLLISS---SEVGQRAPQHRNV--INAAKAAGVKFIAYTSLLHADTSP-LGL 114
Query: 204 MEIKYCTEQFLQDSGLPHVIIRLCGFMQGLIGQYAVPILEEKSVWGTDALTRIAYMDTQD 263
+ TE+ L DSG+ + ++R + + + A LE G +IA D
Sbjct: 115 ADEHIETEKMLADSGIVYTLLRNGWYSENYLAS-APAALEHGVFIGAAGDGKIASATRAD 173
Query: 264 IARLTFVALRNEKINGRTLTFSGPRAWTTQEVITLCERLAGQDANVTMVPVSVLRFTRQL 323
A + G+ +G AWT ++ + +G+ VT +S F L
Sbjct: 174 YAAAAARVISEAGHEGKVYELAGDSAWTLTQLAAELTKQSGK--QVTYQNLSEADFAAAL 231
Query: 324 TRFFEWTNDVADRLAFSEVLTS 345
+ + +AD LA S+V S
Sbjct: 232 -KSVGLPDGLADMLADSDVGAS 252
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 96/233 (41%), Gaps = 9/233 (3%)
Query: 85 SILVVGATGTLGRQIVRRALDE--GYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETI 142
SI V GATG LG +++ L + + +VR A L D G V + D ++PE++
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVR-NVEKASTLADQGVEVRHGDYNQPESL 60
Query: 143 PATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVP 202
GV ++ + + + V +++ A+ G+ K++ Y+ + + +P
Sbjct: 61 QKAFAGVSKLLFISGPHYDNTLLIVQHAN---VVKAARDAGV-KHIAYTGYAFAEESIIP 116
Query: 203 LMEIKYCTEQFLQDSGLPHVIIRLCGFMQGLIGQYAVPILEEKSVWGTDALTRIAYMDTQ 262
L + TE ++ + +P+ +R + + + E ++ + +
Sbjct: 117 LAHVHLATEYAIRTTNIPYTFLRNALYTDFFVNEGLRASTESGAIVTNAGSGIVNSVTRN 176
Query: 263 DIARLTFVALRNEKINGRTLTFSGPRAWTTQEVITLCERLAGQDANVTMVPVS 315
++A L E +T + WT E+ + ++G+ V PVS
Sbjct: 177 ELALAAATVLTEEGHENKTYNLVSNQPWTFDELAQILSEVSGKK--VVHQPVS 227
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 96/233 (41%), Gaps = 9/233 (3%)
Query: 85 SILVVGATGTLGRQIVRRALDE--GYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETI 142
SI V GATG LG +++ L + + +VR A L D G V + D ++PE++
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVR-NVEKASTLADQGVEVRHGDYNQPESL 60
Query: 143 PATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVP 202
GV ++ + + + V +++ A+ G+ K++ Y+ + + +P
Sbjct: 61 QKAFAGVSKLLFISGPHYDNTLLIVQHAN---VVKAARDAGV-KHIAYTGYAFAEESIIP 116
Query: 203 LMEIKYCTEQFLQDSGLPHVIIRLCGFMQGLIGQYAVPILEEKSVWGTDALTRIAYMDTQ 262
L + TE ++ + +P+ +R + + + E ++ + +
Sbjct: 117 LAHVHLATEYAIRTTNIPYTFLRNALYTDFFVNEGLRASTESGAIVTNAGSGIVNSVTRN 176
Query: 263 DIARLTFVALRNEKINGRTLTFSGPRAWTTQEVITLCERLAGQDANVTMVPVS 315
++A L E +T + WT E+ + ++G+ V PVS
Sbjct: 177 ELALAAATVLTEEGHENKTYNLVSNQPWTFDELAQILSEVSGKK--VVHQPVS 227
>pdb|3E5M|A Chain A, Crystal Structure Of The Hscarg Y81a Mutant
pdb|3E5M|B Chain B, Crystal Structure Of The Hscarg Y81a Mutant
Length = 299
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 108/273 (39%), Gaps = 31/273 (11%)
Query: 86 ILVVGATGTLGRQIVRRALDEG-YDVRCLVR-PRPAPADFLRDWGATVVNADLSKPETIP 143
++V G TG G + R L++G + VR + R PR A LR GA VV D +
Sbjct: 7 VVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIME 66
Query: 144 ATLVGVHTVIDCATG----RPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHP 199
L G + E+ +K +GK+ L A+ +G+ V+ + N K
Sbjct: 67 LALNGAYATFIVTNAWESCSQEQEVK----QGKL-LADLARRLGLHYVVYSGLENIKKLT 121
Query: 200 EVPL----MEIKYCTEQFLQDSGLPHVIIRLCGFMQGLIGQYAVPILEEKSVWGTDALTR 255
L + K E++ +D G+P +RL + + L+ + L +K+ G L
Sbjct: 122 AGRLAAAHFDGKGEVEEYFRDIGVPMTSVRLPCYFENLLSHF----LPQKAPDGKSYLLS 177
Query: 256 IAY----MDTQDIARLTFVALR----NEKINGRTLTFSGPR--AWTTQEVITLCERLAGQ 305
+ MD ++ L V L EK G+ + S R A ++T R
Sbjct: 178 LPTGDVPMDGMSVSDLGPVVLSLLKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRKVVH 237
Query: 306 DANVTMVPVSVLRF--TRQLTRFFEWTNDVADR 336
DA +T L F R L F + DR
Sbjct: 238 DAKMTPEDYEKLGFPGARDLANMFRFYALRPDR 270
>pdb|2EXX|A Chain A, Crystal Structure Of Hscarg From Homo Sapiens In Complex
With Nadp
pdb|2EXX|B Chain B, Crystal Structure Of Hscarg From Homo Sapiens In Complex
With Nadp
Length = 306
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 112/284 (39%), Gaps = 37/284 (13%)
Query: 78 GTPVRPTSILVVGATGTLGRQIVRRALDEG-YDVRCLVR-PRPAPADFLRDWGATVVNAD 135
G V ++V G TG G + R L++G + VR + R PR A LR GA VV D
Sbjct: 6 GLMVDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGD 65
Query: 136 LSKPETIPATLVGVHTVI-------DCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYV 188
+ L G + C+ E+ +K +GK+ L A+ +G+ V
Sbjct: 66 QDDQVIMELALNGAYATFIVTNYWESCSQ---EQEVK----QGKL-LADLARRLGLHYVV 117
Query: 189 FYSIHNCDKHPEVPL----MEIKYCTEQFLQDSGLPHVIIRLCGFMQGLIGQYAVPILEE 244
+ + N K L + K E++ +D G+P +RL + + L+ + L +
Sbjct: 118 YSGLENIKKLTAGRLAAAHFDGKGEVEEYFRDIGVPMTSVRLPCYFENLLSHF----LPQ 173
Query: 245 KSVWGTDALTRIAY----MDTQDIARLTFVALR----NEKINGRTLTFSGPR--AWTTQE 294
K+ G L + MD ++ L V L EK G+ + S R A
Sbjct: 174 KAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEKYVGQNIGLSTCRHTAEEYAA 233
Query: 295 VITLCERLAGQDANVTMVPVSVLRF--TRQLTRFFEWTNDVADR 336
++T R DA +T L F R L F + DR
Sbjct: 234 LLTKHTRKVVHDAKMTPEDYEKLGFPGARDLANMFRFYALRPDR 277
>pdb|2WMD|A Chain A, Crystal Structure Of Nmra-Like Family Domain Containing
Protein 1 In Complex With Nadp And 2-(4-Chloro-
Phenylamino)-Nicotinic Acid
pdb|2WM3|A Chain A, Crystal Structure Of Nmra-Like Family Domain Containing
Protein 1 In Complex With Niflumic Acid
Length = 299
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 110/276 (39%), Gaps = 37/276 (13%)
Query: 86 ILVVGATGTLGRQIVRRALDEG-YDVRCLVR-PRPAPADFLRDWGATVVNADLSKPETIP 143
++V G TG G + R L++G + VR + R PR A LR GA VV D +
Sbjct: 8 VVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIME 67
Query: 144 ATLVGVHTVI-------DCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCD 196
L G + C+ E+ +K +GK+ L A+ +G+ V+ + N
Sbjct: 68 LALNGAYATFIVTNYWESCSQ---EQEVK----QGKL-LADLARRLGLHYVVYSGLENIK 119
Query: 197 KHPEVPL----MEIKYCTEQFLQDSGLPHVIIRLCGFMQGLIGQYAVPILEEKSVWGTDA 252
K L + K E++ +D G+P +RL + + L+ + L +K+ G
Sbjct: 120 KLTAGRLAAAHFDGKGEVEEYFRDIGVPMTSVRLPCYFENLLSHF----LPQKAPDGKSY 175
Query: 253 LTRIAY----MDTQDIARLTFVALR----NEKINGRTLTFSGPR--AWTTQEVITLCERL 302
L + MD ++ L V L EK G+ + S R A ++T R
Sbjct: 176 LLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRK 235
Query: 303 AGQDANVTMVPVSVLRF--TRQLTRFFEWTNDVADR 336
DA +T L F R L F + DR
Sbjct: 236 VVHDAKMTPEDYEKLGFPGARDLANMFRFYALRPDR 271
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 95/233 (40%), Gaps = 9/233 (3%)
Query: 85 SILVVGATGTLGRQIVRR--ALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETI 142
SI V GATG LG +++ A + +VR A L D G V + D ++PE++
Sbjct: 2 SIAVTGATGQLGGLVIQHLXAAVPASQIIAIVR-NVEKASTLADQGVEVRHGDYNQPESL 60
Query: 143 PATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVP 202
GV ++ + + + V +++ A+ G+ K++ Y+ + + +P
Sbjct: 61 QKAFAGVSKLLFISGPHYDNTLLIVQHAN---VVKAARDAGV-KHIAYTGYAFAEESIIP 116
Query: 203 LMEIKYCTEQFLQDSGLPHVIIRLCGFMQGLIGQYAVPILEEKSVWGTDALTRIAYMDTQ 262
L + TE ++ + +P+ +R + + + E ++ + +
Sbjct: 117 LAHVHLATEYAIRTTNIPYTFLRNALYTDFFVNEGLRASTESGAIVTNAGSGIVNSVTRN 176
Query: 263 DIARLTFVALRNEKINGRTLTFSGPRAWTTQEVITLCERLAGQDANVTMVPVS 315
++A L E +T + WT E+ + ++G+ V PVS
Sbjct: 177 ELALAAATVLTEEGHENKTYNLVSNQPWTFDELAQILSEVSGKK--VVHQPVS 227
>pdb|3DXF|A Chain A, Crystal Structure Of The Hscarg R37a Mutant
pdb|3DXF|B Chain B, Crystal Structure Of The Hscarg R37a Mutant
Length = 299
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 109/276 (39%), Gaps = 37/276 (13%)
Query: 86 ILVVGATGTLGRQIVRRALDEG-YDVRCL-VRPRPAPADFLRDWGATVVNADLSKPETIP 143
++V G TG G + R L++G + VR + PR A LR GA VV D +
Sbjct: 7 VVVFGGTGAQGGSVARTLLEDGTFKVRVVTANPRKKAAKELRLQGAEVVQGDQDDQVIME 66
Query: 144 ATLVGVHTVI-------DCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCD 196
L G + C+ E+ +K +GK+ L A+ +G+ V+ + N
Sbjct: 67 LALNGAYATFIVTNYWESCSQ---EQEVK----QGKL-LADLARRLGLHYVVYSGLENIK 118
Query: 197 KHPEVPL----MEIKYCTEQFLQDSGLPHVIIRLCGFMQGLIGQYAVPILEEKSVWGTDA 252
K L + K E++ +D G+P +RL + + L+ + L +K+ G
Sbjct: 119 KLTAGRLAAAHFDGKGEVEEYFRDIGVPMTSVRLPCYFENLLSHF----LPQKAPDGKSY 174
Query: 253 LTRIAY----MDTQDIARLTFVALR----NEKINGRTLTFSGPR--AWTTQEVITLCERL 302
L + MD ++ L V L EK G+ + S R A ++T R
Sbjct: 175 LLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRK 234
Query: 303 AGQDANVTMVPVSVLRF--TRQLTRFFEWTNDVADR 336
DA +T L F R L F + DR
Sbjct: 235 VVHDAKMTPEDYEKLGFPGARDLANMFRFYALRPDR 270
>pdb|2VRC|D Chain D, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 94/233 (40%), Gaps = 9/233 (3%)
Query: 85 SILVVGATGTLGRQIVRR--ALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETI 142
SI V GATG LG +++ A + +VR A L D G V + D ++PE++
Sbjct: 2 SIAVTGATGQLGGLVIQHLXAAVPASQIIAIVR-NVEKASTLADQGVEVRHGDYNQPESL 60
Query: 143 PATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVP 202
GV ++ + + + V +++ A+ G+ K++ Y+ + + +P
Sbjct: 61 QKAFAGVSKLLFISGPHYDNTLLIVQHAN---VVKAARDAGV-KHIAYTGYAFAEESIIP 116
Query: 203 LMEIKYCTEQFLQDSGLPHVIIRLCGFMQGLIGQYAVPILEEKSVWGTDALTRIAYMDTQ 262
L + TE + + +P+ +R + + + E ++ + +
Sbjct: 117 LAHVHLATEYATRTTNIPYTFLRNALYTDFFVNEGLRASTESGAIVTNAGSGIVNSVTRN 176
Query: 263 DIARLTFVALRNEKINGRTLTFSGPRAWTTQEVITLCERLAGQDANVTMVPVS 315
++A L E +T + WT E+ + ++G+ V PVS
Sbjct: 177 ELALAAATVLTEEGHENKTYNLVSNQPWTFDELAQILSEVSGKK--VVHQPVS 227
>pdb|2A35|A Chain A, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
pdb|2A35|B Chain B, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
Length = 215
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 60/147 (40%), Gaps = 10/147 (6%)
Query: 83 PTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETI 142
P +L+ GATG G ++ R L E + + R A A+ R + N E +
Sbjct: 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPR-----LDNPVGPLAELL 59
Query: 143 PATLVGVHTVIDC-----ATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDK 197
P + T C EE + VD++ +A+ + A MG + Y+ S D
Sbjct: 60 PQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA 119
Query: 198 HPEVPLMEIKYCTEQFLQDSGLPHVII 224
+ +K EQ LQ+ G P + I
Sbjct: 120 KSSIFYNRVKGELEQALQEQGWPQLTI 146
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 40/266 (15%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRP-----RPAPADF---LRDWGATVVNADLS 137
I++ G TG +G+ +VR +L + RP P+ R G T++ ++
Sbjct: 7 IIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEME 66
Query: 138 KPETIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDK 197
+ E + + L V VI P + ++ +I KA G K S C++
Sbjct: 67 EHEKMVSVLKQVDIVISAL------PFPMIS--SQIHIINAIKAAGNIKRFLPSDFGCEE 118
Query: 198 HPEVPL------MEIKYCTEQFLQDSGLPHVIIRLCGFMQGLIGQYAVPILEEKS----- 246
PL +E K + ++ + LP+ + F G Y V L S
Sbjct: 119 DRIKPLPPFESVLEKKRIIRRAIEAAALPYTYVSANCF-----GAYFVNYLLHPSPHPNR 173
Query: 247 -----VWGTDALTRIAYMDTQDIARLTFVALRNEKINGRTLTFSGPRAWTTQ-EVITLCE 300
++GT T+ +DIA+ T + + R + + P+ +Q E+I+L E
Sbjct: 174 NDDIVIYGTGE-TKFVLNYEEDIAKYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWE 232
Query: 301 RLAGQD-ANVTMVPVSVLRFTRQLTR 325
+G V M ++R +++L +
Sbjct: 233 AKSGLSFKKVHMPDEQLVRLSQELPQ 258
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/250 (19%), Positives = 104/250 (41%), Gaps = 30/250 (12%)
Query: 82 RPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPAD-------FLRDWGATVVNA 134
+ + +L+VG TG +G++IV ++ G+ L RP + + GA ++ A
Sbjct: 3 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEA 62
Query: 135 DLSKPETIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHN 194
L + + L V VI G + ++ L++ K G K S
Sbjct: 63 SLDDHQRLVDALKQVDVVISALAG----GVLSHHILEQLKLVEAIKEAGNIKRFLPSEFG 118
Query: 195 CDKHPEVPLMEIKYCTEQF---------LQDSGLPHVIIR---LCGFMQGLIGQ---YAV 239
D P++ ++ + F ++ + +P+ + G+ G + Q + +
Sbjct: 119 MD--PDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMM 176
Query: 240 PILEEKSVWGTDALTRIAYMDTQDIARLTFVALRNEKINGRTLTFSGPRAWTTQ-EVITL 298
P ++ ++G D + ++D D+ T ++ + + +T+ P +Q EVI +
Sbjct: 177 PPRDKVLIYG-DGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQI 235
Query: 299 CERLAGQDAN 308
ERL+ Q+ +
Sbjct: 236 WERLSEQNLD 245
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 102/253 (40%), Gaps = 22/253 (8%)
Query: 84 TSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDW---GATVVNADLSKPE 140
+ IL+ G TG +G +V+ +L G+ RP + L ++ GA +V +L + E
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHE 71
Query: 141 TIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKH-- 198
+ + V VI A P+ + + +++ K G K S ++
Sbjct: 72 KLVELMKKVDVVI-SALAVPQ-------YLDQFKILEAIKVAGNIKRFLPSDFGVEEDRI 123
Query: 199 ----PEVPLMEIKYCTEQFLQDSGLPHVIIRLCGFMQGLIGQYAVPI--LEEKSVWGTDA 252
P L+E K + ++++ +P+ + F I P +E +V+GT
Sbjct: 124 NALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGE 183
Query: 253 LTRIAYMDTQDIARLTFVALRNEKINGRTLTFSGPRAWTTQ-EVITLCERLAGQDANVTM 311
+ A QDI T + + R + + TQ E+I+ E+ G+
Sbjct: 184 -AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIH 242
Query: 312 VP-VSVLRFTRQL 323
VP ++ T++L
Sbjct: 243 VPEEEIVALTKEL 255
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 85 SILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLR--------DWGATVVNADL 136
++ V GA+G +G +V R L+ GY VR VR P ++ + T+ ADL
Sbjct: 7 TVCVTGASGFIGSWLVMRLLERGYTVRATVR-DPTNVKKVKHLLDLPKAETHLTLWKADL 65
Query: 137 SKPETIPATLVG------VHTVIDCATGRPEEPIKKVDWEGKVALIQ-CAKAMGIQKYVF 189
+ + + G V T +D + PE + K EG + +++ CA A +++ VF
Sbjct: 66 ADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVF 125
Query: 190 YS 191
S
Sbjct: 126 TS 127
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 101/253 (39%), Gaps = 22/253 (8%)
Query: 84 TSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDW---GATVVNADLSKPE 140
+ IL+ G TG +G +V+ +L G+ RP + L ++ GA +V +L + E
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHE 71
Query: 141 TIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKH-- 198
+ + V VI A P+ + +++ K G K S ++
Sbjct: 72 KLVELMKKVDVVI-SALAFPQ-------ILDQFKILEAIKVAGNIKRFLPSDFGVEEDRI 123
Query: 199 ----PEVPLMEIKYCTEQFLQDSGLPHVIIRLCGFMQGLIGQYAVPI--LEEKSVWGTDA 252
P L+E K + ++++ +P+ + F I P +E +V+GT
Sbjct: 124 NALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGE 183
Query: 253 LTRIAYMDTQDIARLTFVALRNEKINGRTLTFSGPRAWTTQ-EVITLCERLAGQDANVTM 311
+ A QDI T + + R + + TQ E+I+ E+ G+
Sbjct: 184 -AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIH 242
Query: 312 VP-VSVLRFTRQL 323
VP ++ T++L
Sbjct: 243 VPEEEIVALTKEL 255
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 101/253 (39%), Gaps = 22/253 (8%)
Query: 84 TSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDW---GATVVNADLSKPE 140
+ IL+ G TG +G +V+ +L G+ RP + L ++ GA +V +L + E
Sbjct: 8 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHE 67
Query: 141 TIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKH-- 198
+ + V VI A P+ + +++ K G K S ++
Sbjct: 68 KLVELMKKVDVVI-SALAFPQ-------ILDQFKILEAIKVAGNIKRFLPSDFGVEEDRI 119
Query: 199 ----PEVPLMEIKYCTEQFLQDSGLPHVIIRLCGFMQGLIGQYAVPI--LEEKSVWGTDA 252
P L+E K + ++++ +P+ + F I P +E +V+GT
Sbjct: 120 NALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGE 179
Query: 253 LTRIAYMDTQDIARLTFVALRNEKINGRTLTFSGPRAWTTQ-EVITLCERLAGQDANVTM 311
+ A QDI T + + R + + TQ E+I+ E+ G+
Sbjct: 180 -AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIH 238
Query: 312 VP-VSVLRFTRQL 323
VP ++ T++L
Sbjct: 239 VPEEEIVALTKEL 251
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 91/232 (39%), Gaps = 50/232 (21%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCL-VRPRPAPADFLRDWGATVVNADLSKPETIPA 144
ILV G+ G +GR +V +G VR +RP G V L + +
Sbjct: 22 ILVTGSAGRVGRAVVAALRTQGRTVRGFDLRP--------SGTGGEEVVGSLEDGQALSD 73
Query: 145 TLVGVHTVIDCATGRPEEPIKK-----VDWEGKVALIQCAKAMGIQKYVFYSIHNC--DK 197
++GV V+ P + V+ EG L+ A A G++++VF S +
Sbjct: 74 AIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPEN 133
Query: 198 HPE-VPLME------------IKYCTEQ---FLQDSG-LPHVIIRLC------------G 228
PE +P+ E K E+ F Q SG + VI+R
Sbjct: 134 RPEFLPVTEDHPLCPNSPYGLTKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDS 193
Query: 229 FMQGLIGQYAVPILEEKSVWGTDALTRIAYMDTQDIARLTFVALRNEKINGR 280
F G + P + ++ +G A+ + + ++DI + + RNE NGR
Sbjct: 194 FFSGPR-FFLRPRIHQQQNFGNAAIAEL--LQSRDIGEPSHILARNE--NGR 240
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 101/253 (39%), Gaps = 22/253 (8%)
Query: 84 TSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDW---GATVVNADLSKPE 140
+ IL+ G TG +G +V+ +L G+ RP + L ++ GA +V +L + E
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHE 71
Query: 141 TIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKH-- 198
+ + V VI A P+ + +++ K G K S ++
Sbjct: 72 KLVELMKKVDVVI-SALAFPQ-------ILDQFKILEAIKVAGNIKRFLPSDFGVEEDRI 123
Query: 199 ----PEVPLMEIKYCTEQFLQDSGLPHVIIRLCGFMQGLIGQYAVPI--LEEKSVWGTDA 252
P L+E + + ++++ +P+ + F I P +E +V+GT
Sbjct: 124 NALPPFEALIERQRMIRRAIEEANIPYTYVSANCFASYFINYLLRPYDPKDEITVYGTGE 183
Query: 253 LTRIAYMDTQDIARLTFVALRNEKINGRTLTFSGPRAWTTQ-EVITLCERLAGQDANVTM 311
+ A QDI T + + R + + TQ E+I+ E+ G+
Sbjct: 184 -AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIH 242
Query: 312 VP-VSVLRFTRQL 323
VP ++ T++L
Sbjct: 243 VPEEEIVALTKEL 255
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGAT-VVNADLSKPETIPA 144
+LVVGA G + R ++ ++G++ VR + LR+ GA+ +V A+L E
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVAXVRNEEQGPE-LRERGASDIVVANLE--EDFSH 80
Query: 145 TLVGVHTVIDCATGRPEEPIKK---VDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEV 201
+ V+ A P K +D G + IQ A+ GI++++ S +
Sbjct: 81 AFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIXVSSVGTVDPDQG 140
Query: 202 PLMEIKYCTEQFLQD-----SGLPHVIIR 225
P Y + L D S L + I+R
Sbjct: 141 PXNXRHYLVAKRLADDELKRSSLDYTIVR 169
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 56/284 (19%), Positives = 105/284 (36%), Gaps = 58/284 (20%)
Query: 84 TSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKP---- 139
SIL+ G G +G V++ +DEG V + + D + + GA N DL
Sbjct: 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITE-GAKFYNGDLRDKAFLR 60
Query: 140 -----ETIPATLVGVHTVIDCATG-RPEEPIKKVDWE--GKVALIQCAKAMGIQKYVFYS 191
E I A + H D G E+P++ + G + L++ + K++F S
Sbjct: 61 DVFTQENIEAVM---HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSS 117
Query: 192 IHNCDKHPEVPLM-------------EIKYCTEQFL----QDSGLPHVIIRLCGFM---- 230
+V L+ E K E+ L Q S L + I R
Sbjct: 118 TAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATP 177
Query: 231 QGLIGQ------YAVPIL--------EEKSVWGTDALTRIA-----YMDTQDIARLTFVA 271
G+IG+ + +P++ E+ ++G D T Y+ +D+ F+
Sbjct: 178 NGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLG 237
Query: 272 LRNEKINGRT--LTFSGPRAWTTQEVITLCERLAGQDANVTMVP 313
L++ + G + ++ +E++ + + + P
Sbjct: 238 LKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAP 281
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 19/112 (16%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVR---------PRPAPADFLRDWGATVVNADL 136
I + GATG G + +A+ GY+V LVR PRP A VV D+
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRP----------AHVVVGDV 55
Query: 137 SKPETIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYV 188
+ + T+ G VI R + V EG ++ KA G+ K V
Sbjct: 56 LQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVV 107
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 18/151 (11%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRPRP-APA-----DFLRDWGATVVNADLSKP 139
+L+ GATG +G+ + +LD L RP P +P+ L D GA +V +++
Sbjct: 13 VLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQ 72
Query: 140 ETIPATLVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSI--HNCDK 197
E + L I +T E + ++AL++ KA+G K S H+ ++
Sbjct: 73 EAMEKILKEHEIDIVVSTVGGESILD------QIALVKAMKAVGTIKRFLPSEFGHDVNR 126
Query: 198 ----HPEVPLMEIKYCTEQFLQDSGLPHVII 224
P + + K Q +++SG+P I
Sbjct: 127 ADPVEPGLNMYREKRRVRQLVEESGIPFTYI 157
>pdb|3DQP|A Chain A, Crystal Structure Of The Oxidoreductase Ylbe From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr121
Length = 219
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETIPAT 145
I +VG+TG +G+ +++ Y + R + + A + D + PE
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-NNVKAVHFDVDWT-PEEXAKQ 60
Query: 146 LVGVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYS 191
L G +I+ +G + + KVD G V L Q A+ +++++ S
Sbjct: 61 LHGXDAIINV-SGSGGKSLLKVDLYGAVKLXQAAEKAEVKRFILLS 105
>pdb|3GDB|A Chain A, Crystal Structure Of Spr0440 Glycoside Hydrolase Domain,
Endo-D From Streptococcus Pneumoniae R6
Length = 937
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 324 TRFFEWTNDVADRLAFSEVLTSDTVFSVPMSETFDLLGVDAKDIITLEKY--LQDYFTN 380
T FF W+N +AD+ F+E L D S P+ A+ ++ + KY YF N
Sbjct: 271 TLFFNWSNSIADQERFAEALKQDADGSFPI----------ARKLVDMAKYYGYDGYFIN 319
>pdb|2W91|A Chain A, Structure Of A Streptococcus Pneumoniae Family 85
Glycoside Hydrolase, Endo-D.
pdb|2W92|A Chain A, Structure Of A Streptococcus Pneumoniae Family 85
Glycoside Hydrolase, Endo-D, In Complex With
Nag-Thiazoline
Length = 653
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 324 TRFFEWTNDVADRLAFSEVLTSDTVFSVPMSETFDLLGVDAKDIITLEKY--LQDYFTN 380
T FF W+N +AD+ F+E L D S P+ A+ ++ + KY YF N
Sbjct: 120 TLFFNWSNSIADQERFAEALKQDADGSFPI----------ARKLVDMAKYYGYDGYFIN 168
>pdb|1XGK|A Chain A, Crystal Structure Of N12g And A18g Mutant Nmra
Length = 352
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 85 SILVVGATGTLGRQIVRRALDEGYDVRCLVRP-RPAPADFLRDW-GATVVNADLSKPETI 142
+I VVGATG G ++R A G+ VR V + A+ L+ T+ L +
Sbjct: 7 TIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPL 66
Query: 143 PATLV-GVHTVIDCATGRPEEPIKKVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKH--- 198
TL G H T + + I GK +A IQ Y++ S+ + +
Sbjct: 67 MDTLFEGAHLAFINTTSQAGDEIAI----GKDLADAAKRAGTIQHYIYSSMPDHSLYGPW 122
Query: 199 PEVPLMEIKYCTEQFLQDSGLPHVII 224
P VP+ K+ E +++ GLP +
Sbjct: 123 PAVPMWAPKFTVENYVRQLGLPSTFV 148
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGA 129
+LV GA G + +V + L+ GY VR R A+ + W A
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDA 57
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGA 129
+LV GA G + +V + L+ GY VR R A+ + W A
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDA 57
>pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas
pdb|1E5D|B Chain B, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas
Length = 402
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 324 TRFFEWTNDVADRLAFSEVLTSDTVF--SVPMSETFDLLGVDAKDIITLEKYLQDYFTNI 381
TR W + + A +VL S+ +F ++ SE F D + TLE+ +++Y+ NI
Sbjct: 142 TRMLHWPDSMVSWFADEKVLISNDIFGQNIAASERFS----DQIPVHTLERAMREYYANI 197
Query: 382 LK 383
+
Sbjct: 198 VN 199
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 75 MSPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVR-----PRPAPADFLRDWG- 128
M+ P+ + VVG TG + +V+ L +GY V VR + + L++ G
Sbjct: 1 MATQHPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD 60
Query: 129 ATVVNADLSKPETIPATLVG------VHTVIDCATGRPEEPIKKVDWEGKVALIQ-CAKA 181
+ ADL+ + A + G V T + A+ PE + K +G V +++ C +A
Sbjct: 61 LKIFRADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRA 120
Query: 182 MGIQKYVFYS 191
+++ + S
Sbjct: 121 KSVKRVILTS 130
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19
Length = 224
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETIPAT 145
I V+GATG G IV A G++V +VR AD L AT+V L E A
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE---AD 59
Query: 146 LVGVHTVIDC 155
L V V+D
Sbjct: 60 LDSVDAVVDA 69
>pdb|1VJO|A Chain A, Crystal Structure Of Alanine--Glyoxylate Aminotransferase
(Alr1004) From Nostoc Sp. At 1.70 A Resolution
Length = 393
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 53 TQQMVVKCSAGGGTSGTVQAVNMSPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRC 112
T+ + +G GT+ A + V P ++++G G G ++V A G DVR
Sbjct: 82 TENPLTIAVSGTGTA----AXEATIANAVEPGDVVLIGVAGYFGNRLVDXAGRYGADVRT 137
Query: 113 LVRPRPAPADFLRDWGATVVNADL-SKPET-IPATLVGVHTVIDCATGRPEEPIKKVDWE 170
+ +P WG +L + ET PA L VH +P E + ++ E
Sbjct: 138 ISKP----------WGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCRE 187
Query: 171 -GKVALIQCAKAMG 183
G + L+ ++G
Sbjct: 188 FGTLLLVDTVTSLG 201
>pdb|2ZK7|A Chain A, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma
Acidophilum Aldohexose Dehydrogenase (Aldt)
pdb|2ZK7|B Chain B, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma
Acidophilum Aldohexose Dehydrogenase (Aldt)
Length = 257
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 79 TPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSK 138
+ +R ++V GA+ +GR I R +DEG V L P A + + D++
Sbjct: 11 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDH------IECDVTN 64
Query: 139 PETIPATL 146
P+ + A++
Sbjct: 65 PDQVKASI 72
>pdb|2DTD|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (aldt) In Ligand-free Form
pdb|2DTD|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (aldt) In Ligand-free Form
pdb|2DTE|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With Nadh
pdb|2DTE|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With Nadh
pdb|2DTX|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With D-Mannose
pdb|2DTX|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With D-Mannose
Length = 264
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 81 VRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPE 140
+R ++V GA+ +GR I R +DEG V L P A + + D++ P+
Sbjct: 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDH------IECDVTNPD 59
Query: 141 TIPATL 146
+ A++
Sbjct: 60 QVKASI 65
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVR 115
I+++GA+G +G ++ AL+ G++V +VR
Sbjct: 7 IVLIGASGFVGSALLNEALNRGFEVTAVVR 36
>pdb|3EW7|A Chain A, Crystal Structure Of The Lmo0794 Protein From Listeria
Monocytogenes. Northeast Structural Genomics Consortium
Target Lmr162
Length = 221
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 86 ILVVGATGTLGRQIVRRALDEGYDVRCLVR 115
I ++GATG G +I+ A + G++V +VR
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEVTAIVR 32
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 72 AVNMSPGTPVRPTSILVVGATGTLGRQIV---RRALDEGYDVRCLVR 115
AVN+ PG ++L+ GATG LGR +V R LD + CLVR
Sbjct: 63 AVNL-PGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVR 108
>pdb|1K6I|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Trigonal Form)
pdb|1K6J|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Monoclinic Form)
pdb|1K6J|B Chain B, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Monoclinic Form)
pdb|1K6X|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator In Complex With Nad At 1.5 A Resolution
(Trigonal Form)
pdb|1TI7|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator, In Complex With Nadp At 1.7a Resolution
pdb|2VUS|A Chain A, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|B Chain B, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|C Chain C, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|D Chain D, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|E Chain E, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|F Chain F, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|G Chain G, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|H Chain H, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUT|A Chain A, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|B Chain B, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|C Chain C, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|D Chain D, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|E Chain E, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|F Chain F, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|G Chain G, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|H Chain H, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|A Chain A, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|B Chain B, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|C Chain C, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|D Chain D, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|E Chain E, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|F Chain F, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|G Chain G, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|H Chain H, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
Length = 352
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 175 LIQCAKAMG-IQKYVFYSIHNCDKH---PEVPLMEIKYCTEQFLQDSGLPHVII 224
L AK G IQ Y++ S+ + + P VP+ K+ E +++ GLP +
Sbjct: 95 LADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFV 148
>pdb|1E7W|A Chain A, One Active Site, Two Modes Of Reduction Correlate The
Mechanism Of Leishmania Pteridine Reductase With Pterin
Metabolism And Antifolate Drug Resistance In Trpanosomes
pdb|1E7W|B Chain B, One Active Site, Two Modes Of Reduction Correlate The
Mechanism Of Leishmania Pteridine Reductase With Pterin
Metabolism And Antifolate Drug Resistance In Trpanosomes
Length = 291
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 76 SPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAP-ADFL-------RDW 127
+P PV LV GA LGR I EGY V CL R A A+ L R
Sbjct: 6 APTVPV----ALVTGAAKRLGRSIAEGLHAEGYAV-CLHYHRSAAEANALSATLNARRPN 60
Query: 128 GATVVNADLSKPETIPAT 145
A V ADLS T P +
Sbjct: 61 SAITVQADLSNVATAPVS 78
>pdb|3GVC|A Chain A, Crystal Structure Of Probable Short-Chain Dehydrogenase-
Reductase From Mycobacterium Tuberculosis
pdb|3GVC|B Chain B, Crystal Structure Of Probable Short-Chain Dehydrogenase-
Reductase From Mycobacterium Tuberculosis
pdb|3GVC|C Chain C, Crystal Structure Of Probable Short-Chain Dehydrogenase-
Reductase From Mycobacterium Tuberculosis
pdb|3GVC|D Chain D, Crystal Structure Of Probable Short-Chain Dehydrogenase-
Reductase From Mycobacterium Tuberculosis
Length = 277
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 68 GTVQAVNMSPGTPVRP----TSILVVGATGTLGRQIVRRALDEGYDVRC 112
GT++A PG+ P +V GA +G + RR DEG V C
Sbjct: 10 GTLEAQTQGPGSMNHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLC 58
>pdb|1E92|A Chain A, Pteridine Reductase 1 From Leishmania Major Complexed With
Nadp+ And Dihydrobiopterin
pdb|1E92|B Chain B, Pteridine Reductase 1 From Leishmania Major Complexed With
Nadp+ And Dihydrobiopterin
pdb|1E92|C Chain C, Pteridine Reductase 1 From Leishmania Major Complexed With
Nadp+ And Dihydrobiopterin
pdb|1E92|D Chain D, Pteridine Reductase 1 From Leishmania Major Complexed With
Nadp+ And Dihydrobiopterin
pdb|2BF7|A Chain A, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Biopterin
pdb|2BF7|B Chain B, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Biopterin
pdb|2BF7|C Chain C, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Biopterin
pdb|2BF7|D Chain D, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Biopterin
pdb|2BFA|A Chain A, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Cb3717
pdb|2BFA|B Chain B, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Cb3717
pdb|2BFA|C Chain C, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Cb3717
pdb|2BFA|D Chain D, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Cb3717
pdb|2BFM|A Chain A, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Trimethoprim
pdb|2BFM|B Chain B, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Trimethoprim
pdb|2BFM|C Chain C, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Trimethoprim
pdb|2BFM|D Chain D, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Trimethoprim
pdb|2BFO|A Chain A, Leishmania Major Pteridine Reductase 1 In Complex With
Nadph
pdb|2BFO|B Chain B, Leishmania Major Pteridine Reductase 1 In Complex With
Nadph
pdb|2BFO|C Chain C, Leishmania Major Pteridine Reductase 1 In Complex With
Nadph
pdb|2BFO|D Chain D, Leishmania Major Pteridine Reductase 1 In Complex With
Nadph
pdb|2BFP|A Chain A, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Tetrahydrobiopterin
pdb|2BFP|B Chain B, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Tetrahydrobiopterin
pdb|2BFP|C Chain C, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Tetrahydrobiopterin
pdb|2BFP|D Chain D, Leishmania Major Pteridine Reductase 1 In Complex With
Nadp And Tetrahydrobiopterin
pdb|3H4V|A Chain A, Selective Screening And Design To Identify Inhibitors Of
Leishmania Major Pteridine Reductase 1
pdb|3H4V|B Chain B, Selective Screening And Design To Identify Inhibitors Of
Leishmania Major Pteridine Reductase 1
pdb|3H4V|C Chain C, Selective Screening And Design To Identify Inhibitors Of
Leishmania Major Pteridine Reductase 1
pdb|3H4V|D Chain D, Selective Screening And Design To Identify Inhibitors Of
Leishmania Major Pteridine Reductase 1
pdb|3H4V|E Chain E, Selective Screening And Design To Identify Inhibitors Of
Leishmania Major Pteridine Reductase 1
pdb|3H4V|F Chain F, Selective Screening And Design To Identify Inhibitors Of
Leishmania Major Pteridine Reductase 1
pdb|3H4V|G Chain G, Selective Screening And Design To Identify Inhibitors Of
Leishmania Major Pteridine Reductase 1
pdb|3H4V|H Chain H, Selective Screening And Design To Identify Inhibitors Of
Leishmania Major Pteridine Reductase 1
Length = 288
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 76 SPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAP-ADFL-------RDW 127
+P PV LV GA LGR I EGY V CL R A A+ L R
Sbjct: 3 APTVPV----ALVTGAAKRLGRSIAEGLHAEGYAV-CLHYHRSAAEANALSATLNARRPN 57
Query: 128 GATVVNADLSKPETIPAT 145
A V ADLS T P +
Sbjct: 58 SAITVQADLSNVATAPVS 75
>pdb|1W0C|A Chain A, Inhibition Of Leishmania Major Pteridine Reductase (Ptr1)
By 2,4,6-Triaminoquinazoline; Structure Of The Nadp
Ternary Complex.
pdb|1W0C|B Chain B, Inhibition Of Leishmania Major Pteridine Reductase (Ptr1)
By 2,4,6-Triaminoquinazoline; Structure Of The Nadp
Ternary Complex.
pdb|1W0C|C Chain C, Inhibition Of Leishmania Major Pteridine Reductase (Ptr1)
By 2,4,6-Triaminoquinazoline; Structure Of The Nadp
Ternary Complex.
pdb|1W0C|D Chain D, Inhibition Of Leishmania Major Pteridine Reductase (Ptr1)
By 2,4,6-Triaminoquinazoline; Structure Of The Nadp
Ternary Complex.
pdb|1W0C|E Chain E, Inhibition Of Leishmania Major Pteridine Reductase (Ptr1)
By 2,4,6-Triaminoquinazoline; Structure Of The Nadp
Ternary Complex.
pdb|1W0C|F Chain F, Inhibition Of Leishmania Major Pteridine Reductase (Ptr1)
By 2,4,6-Triaminoquinazoline; Structure Of The Nadp
Ternary Complex.
pdb|1W0C|G Chain G, Inhibition Of Leishmania Major Pteridine Reductase (Ptr1)
By 2,4,6-Triaminoquinazoline; Structure Of The Nadp
Ternary Complex.
pdb|1W0C|H Chain H, Inhibition Of Leishmania Major Pteridine Reductase (Ptr1)
By 2,4,6-Triaminoquinazoline; Structure Of The Nadp
Ternary Complex
Length = 307
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 76 SPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAP-ADFL-------RDW 127
+P PV LV GA LGR I EGY V CL R A A+ L R
Sbjct: 22 APTVPV----ALVTGAAKRLGRSIAEGLHAEGYAV-CLHYHRSAAEANALSATLNARRPN 76
Query: 128 GATVVNADLSKPETIPAT 145
A V ADLS T P +
Sbjct: 77 SAITVQADLSNVATAPVS 94
>pdb|3OH8|A Chain A, Crystal Structure Of The Nucleoside-Diphosphate Sugar
Epimerase From Corynebacterium Glutamicum. Northeast
Structural Genomics Consortium Target Cgr91
Length = 516
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 83 PTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRD 126
P ++ + G+ G +GR + + G++V LVR P P D
Sbjct: 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWD 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,842,387
Number of Sequences: 62578
Number of extensions: 495994
Number of successful extensions: 1695
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1674
Number of HSP's gapped (non-prelim): 60
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)