Query 015873
Match_columns 399
No_of_seqs 167 out of 1141
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 01:41:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0192 MetK S-adenosylmethion 100.0 7E-190 2E-194 1386.4 38.5 381 8-396 3-383 (388)
2 PLN02243 S-adenosylmethionine 100.0 6E-187 1E-191 1380.4 42.6 383 7-392 1-386 (386)
3 PTZ00104 S-adenosylmethionine 100.0 2E-185 4E-190 1373.6 41.7 388 6-398 7-397 (398)
4 PRK05250 S-adenosylmethionine 100.0 2E-185 5E-190 1369.9 40.4 378 9-396 2-379 (384)
5 PRK12459 S-adenosylmethionine 100.0 2E-185 5E-190 1370.5 40.0 379 7-396 1-381 (386)
6 TIGR01034 metK S-adenosylmethi 100.0 7E-185 1E-189 1362.6 39.0 374 11-396 1-374 (377)
7 KOG1506 S-adenosylmethionine s 100.0 1E-177 3E-182 1271.3 35.3 382 6-394 2-383 (383)
8 PF02773 S-AdoMet_synt_C: S-ad 100.0 2.4E-83 5.2E-88 564.0 9.5 138 246-388 1-138 (138)
9 PF02772 S-AdoMet_synt_M: S-ad 100.0 7.6E-57 1.7E-61 390.1 12.0 119 123-244 2-120 (120)
10 PF00438 S-AdoMet_synt_N: S-ad 100.0 3.1E-49 6.8E-54 333.2 7.4 100 8-107 1-100 (100)
11 PRK04439 S-adenosylmethionine 98.9 3.5E-07 7.6E-12 93.7 21.7 305 16-348 24-382 (399)
12 PF01941 AdoMet_Synthase: S-ad 98.9 4E-07 8.8E-12 93.2 21.8 308 15-346 23-380 (396)
13 COG1812 MetK Archaeal S-adenos 98.1 0.00031 6.7E-09 71.7 18.1 288 15-328 23-361 (400)
14 COG1325 Predicted exosome subu 56.3 17 0.00037 33.7 4.3 51 308-380 3-53 (149)
15 TIGR00590 pcna proliferating c 54.7 98 0.0021 30.2 9.5 38 287-328 204-241 (259)
16 PRK11023 outer membrane lipopr 50.2 27 0.00058 32.7 4.6 43 23-65 121-164 (191)
17 PRK11198 LysM domain/BON super 46.2 35 0.00077 30.7 4.6 52 9-66 12-63 (147)
18 PF02980 FokI_C: Restriction e 44.8 20 0.00043 33.1 2.7 37 284-320 77-113 (142)
19 cd07366 3MGA_Dioxygenase Subun 43.9 43 0.00093 34.3 5.3 24 131-154 3-26 (328)
20 PF14084 DUF4264: Protein of u 43.4 7 0.00015 30.4 -0.3 39 104-148 11-49 (52)
21 cd04518 TBP_archaea archaeal T 36.2 1.2E+02 0.0026 28.4 6.6 81 192-305 2-86 (174)
22 PF04208 MtrA: Tetrahydrometha 35.1 45 0.00097 31.8 3.6 41 40-81 18-65 (176)
23 PF00352 TBP: Transcription fa 35.0 51 0.0011 26.8 3.5 57 191-248 3-64 (86)
24 PRK00394 transcription factor; 33.2 1.6E+02 0.0035 27.6 6.9 81 192-305 1-85 (179)
25 cd01269 PLX Pollux (PLX) Phosp 32.8 1.3E+02 0.0029 27.4 6.0 82 57-141 6-94 (129)
26 KOG3447 Mitochondrial/chloropl 29.6 19 0.00041 33.1 0.2 12 255-266 95-106 (150)
27 PRK04964 hypothetical protein; 27.3 51 0.0011 26.7 2.2 31 122-167 13-43 (66)
28 PRK10568 periplasmic protein; 25.9 1.1E+02 0.0025 28.8 4.7 38 29-66 61-98 (203)
29 TIGR02889 spore_YpeB germinati 25.4 3.5E+02 0.0076 29.0 8.6 97 44-147 262-371 (435)
30 PRK14053 methyltransferase; Pr 25.3 87 0.0019 30.3 3.8 42 39-81 17-62 (194)
31 PF02171 Piwi: Piwi domain; I 25.2 56 0.0012 31.7 2.6 22 140-161 279-300 (302)
32 PF06786 UPF0253: Uncharacteri 25.2 60 0.0013 26.3 2.3 32 122-168 13-44 (66)
33 cd00652 TBP_TLF TATA box bindi 25.1 3.4E+02 0.0074 25.2 7.6 81 192-305 2-86 (174)
34 PLN00062 TATA-box-binding prot 24.8 2.4E+02 0.0053 26.5 6.6 80 192-304 2-85 (179)
35 cd04516 TBP_eukaryotes eukaryo 24.1 2.5E+02 0.0054 26.3 6.5 81 192-305 2-86 (174)
36 PRK13363 protocatechuate 4,5-d 24.0 1.3E+02 0.0028 31.0 5.0 21 131-151 4-25 (335)
37 PRK00964 tetrahydromethanopter 23.5 85 0.0018 31.0 3.4 42 39-81 20-69 (225)
38 KOG2978 Dolichol-phosphate man 22.7 89 0.0019 30.7 3.3 36 311-347 197-232 (238)
39 PRK11023 outer membrane lipopr 22.5 1.3E+02 0.0028 28.2 4.4 42 24-66 44-88 (191)
40 cd04517 TLF TBP-like factors ( 22.2 1.4E+02 0.003 27.9 4.4 57 192-248 3-62 (174)
41 COG5309 Exo-beta-1,3-glucanase 22.1 73 0.0016 32.6 2.7 85 22-114 110-194 (305)
42 COG2101 SPT15 TATA-box binding 21.2 1.3E+02 0.0028 29.0 4.0 57 192-248 8-68 (185)
43 cd04518 TBP_archaea archaeal T 21.1 1.7E+02 0.0036 27.4 4.7 58 191-248 92-153 (174)
44 COG1608 Predicted archaeal kin 20.2 1.4E+02 0.003 30.0 4.1 55 281-347 72-128 (252)
No 1
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=100.00 E-value=7.4e-190 Score=1386.43 Aligned_cols=381 Identities=60% Similarity=0.986 Sum_probs=371.9
Q ss_pred cceeEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 015873 8 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 87 (399)
Q Consensus 8 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 87 (399)
+.+|||||||+|||||||||||||||||+||+|||+|||||||+++||+|+|+|||+|+++||++++||++|++|||+++
T Consensus 3 ~~~lFTSESVseGHPDKi~DqISDaILD~~L~~Dp~srVAcEt~v~tg~v~i~GEitt~~~vd~~~~~r~~I~~IGY~~~ 82 (388)
T COG0192 3 KYFLFTSESVSEGHPDKICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTSAYVDIVNIARKTIKEIGYTES 82 (388)
T ss_pred ccceeeeccccCCCChHHHHHHhHHHHHHHHhcCCCceEEEEEEEecCeEEEEEEEecCccccHHHHHHHHHHHhCCCcc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHcCCC
Q 015873 88 DVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTC 167 (399)
Q Consensus 88 ~~gfd~~t~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~~~~ 167 (399)
++|||++||.|+++|++|||||+|||++..+ ..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+
T Consensus 83 ~~Gfd~~t~~vl~~i~~QSpDIaqgVd~~~~-~~~~~GAGDQGimFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~g~l 161 (388)
T COG0192 83 DYGFDAKTCAVLVAIGEQSPDIAQGVDEADE-ELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGEL 161 (388)
T ss_pred ccCcCccceEEEeecccCChhHHHhhhhccc-chhhcCCCcceeEeeeecCCcccccChHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999997432 356799999999999999999999999999999999999999999999
Q ss_pred CcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEEcCCCCeEEc
Q 015873 168 SWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG 247 (399)
Q Consensus 168 ~~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviG 247 (399)
||||||+||||||+|++ ++ +|+||++||+||||++++++++||+.++|+||+|++|+++++++|+||||||||||||
T Consensus 162 ~~LrpD~KsQVtv~Y~~-~~--~p~~idtIvvStQH~~~i~~~~l~~~v~e~iI~pv~~~~~l~~~tk~~INPtGrFViG 238 (388)
T COG0192 162 PWLRPDAKSQVTVEYED-NG--KPVRIDTIVVSTQHDPDISQEQLREDVIEEIIKPVLPEELLDDKTKYFINPTGRFVIG 238 (388)
T ss_pred cccCCCcceeEEEEEcC-CC--CceeEEEEEEEeccCcccCHHHHHHHHHHHHHhhhccHhhcCcCceEEECCCCCeeeC
Confidence 99999999999999986 35 8999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeEEEE
Q 015873 248 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVD 327 (399)
Q Consensus 248 GP~~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi~V~ 327 (399)
||+||||||||||||||||||+||||||||||||||||||||||||||||||||||||+|||||||||||+|+|+||+||
T Consensus 239 GP~gD~GLTGRKIIVDTYGG~a~HGGGAFSGKDptKVDRSaAYaARyvAKNiVAAglA~~ceVQlsYAIGva~PvSi~Vd 318 (388)
T COG0192 239 GPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSISVD 318 (388)
T ss_pred CCCccccCccceEEEEcCCCccCCCCccCCCCCCcccchHHHHHHHHHHHHHHHhhhhhheEEEEEeEecccCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCCCCCCCccccccccccC
Q 015873 328 SYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 396 (399)
Q Consensus 328 tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~ 396 (399)
||||+++++++|.++|+++|||||++||++|+|++| ||++||+||||||++ +|||||+|+++.|+
T Consensus 319 tfgT~kvse~~i~~~v~~~FdlrP~gIi~~LdL~~p---iY~~tAaYGHFGr~~-~~pWEk~dkv~~lk 383 (388)
T COG0192 319 TFGTGKVSEEKIEEAVRKVFDLRPAGIIKMLDLLRP---IYRKTAAYGHFGRED-DFPWEKLDKVDELK 383 (388)
T ss_pred ccCCcccCHHHHHHHHHHhcCCCHHHHHHHhccCCc---cchhcccccccCCCC-CCCccchhhHHHHH
Confidence 999999999999999999999999999999999999 999999999999987 89999999998876
No 2
>PLN02243 S-adenosylmethionine synthase
Probab=100.00 E-value=6e-187 Score=1380.35 Aligned_cols=383 Identities=94% Similarity=1.460 Sum_probs=369.8
Q ss_pred ccceeEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCC
Q 015873 7 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVS 86 (399)
Q Consensus 7 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 86 (399)
|.+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||++++||++|++|||++
T Consensus 1 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~qDp~srVA~Et~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 80 (386)
T PLN02243 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCREIGFVS 80 (386)
T ss_pred CCceEEEecCCCCCCChHHHHHHHHHHHHHHHhhCCCCcEEEEEEEECCEEEEEEEECCCCcCCHHHHHHHHHHHhCCCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHcCC
Q 015873 87 DDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNST 166 (399)
Q Consensus 87 ~~~gfd~~t~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~~~ 166 (399)
+++|||+++|.|++.|++|||||+|||+.+.++..+++|||||||||||||||||+||||||+|||+|++||+++||+|.
T Consensus 81 ~~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~iGAGDQGimfGYA~~ET~e~MPlpi~lAh~l~~~l~~~Rk~~~ 160 (386)
T PLN02243 81 DDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGT 160 (386)
T ss_pred cccCcCCCceEEEecCCCCChhHhhccccccccccccCCCCcceEEeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999985422222458999999999999999999999999999999999999999999
Q ss_pred CCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEEcCCCCeEE
Q 015873 167 CSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 246 (399)
Q Consensus 167 ~~~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~Fvi 246 (399)
+|||||||||||||+|+++.+.++|+||++||||+||++++++++|+++|+|+||+|++|+++++++|+||||||||||+
T Consensus 161 ~~~l~PD~KsQVtv~Y~~~~~~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtGrFvi 240 (386)
T PLN02243 161 CPWLRPDGKTQVTVEYKNEGGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240 (386)
T ss_pred CCeecCCCceEEEEEeecCCCCccceeEeEEEEeeccCCCCCHHHHHHHHHHHHhHHhcCcccCCCCcEEEECCCCCeEe
Confidence 99999999999999997543534599999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeEEE
Q 015873 247 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFV 326 (399)
Q Consensus 247 GGP~~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi~V 326 (399)
|||+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+|+||||+|
T Consensus 241 GGP~~D~GLTGRKIiVDTYGG~~~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaaglA~rceVQlsYAIGva~Pvsi~V 320 (386)
T PLN02243 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVPEPLSVFV 320 (386)
T ss_pred CCCcccccccCceEEEEcCCCccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCCCeeEEEEEEEcccCcCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCChHHHHHHHHHhCCCChHhHhhhccccc---ccccccccccccccCCCCCCCCCccccccc
Q 015873 327 DSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKR---GGNGRFLKTAAYGHFGRDDPDFTWEVVKPL 392 (399)
Q Consensus 327 ~tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~---p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~ 392 (399)
|||||+++++++|.++|+++|||||++||++|+|++ | ||++||+||||||++++||||++|+|
T Consensus 321 ~TfGT~~~~d~~i~~~v~~~Fdlrp~~Ii~~L~L~~~~~p---iY~~ta~yGHFGr~~~~fpWE~~d~~ 386 (386)
T PLN02243 321 DTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNG---RFQKTAAYGHFGRDDPDFTWEVVKPL 386 (386)
T ss_pred ecCCCCcCCHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCC---cchhccccCCCCCCCCCCCccccCCC
Confidence 999999999999999999999999999999999999 8 99999999999999889999999986
No 3
>PTZ00104 S-adenosylmethionine synthase; Provisional
Probab=100.00 E-value=2e-185 Score=1373.59 Aligned_cols=388 Identities=72% Similarity=1.152 Sum_probs=373.3
Q ss_pred cccceeEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCC
Q 015873 6 KMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFV 85 (399)
Q Consensus 6 ~~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~ 85 (399)
++++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||+++|||++|++|||+
T Consensus 7 ~~~~~lfTSESVseGHPDKicDqISDaILD~~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vDi~~ivR~~i~~IGY~ 86 (398)
T PTZ00104 7 SVGHFLFTSESVSEGHPDKLCDQISDAVLDACLAQDPLSKVACETCAKTGMVMVFGEITTKAVVDYQKVVRDTVKEIGYD 86 (398)
T ss_pred CcCCEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcCCCCcEEEEEEEeCCEEEEEEEEcCCccCCHHHHHHHHHHHhCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHcC
Q 015873 86 SDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNS 165 (399)
Q Consensus 86 ~~~~gfd~~t~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~~ 165 (399)
++++|||+++|.|+++|++|||||+|||+.. ...+++|||||||||||||||||+||||||+|||+|++||+++||+|
T Consensus 87 ~~~~gfd~~t~~v~~~i~~QSpDIa~gV~~~--~~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~L~~~l~~~Rk~~ 164 (398)
T PTZ00104 87 DTEKGLDYKTCNVLVAIEQQSPDIAQGVHVG--KKEEDIGAGDQGIMFGYATDETEELMPLTHELATKLAKRLSELRKNG 164 (398)
T ss_pred CcccCcCCCceEEEecCCCCChhHhhccccc--cccccCCCCccceeeeeecCCCcccCCcHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999842 11235899999999999999999999999999999999999999999
Q ss_pred CCCcccCCcceeEEEEEecCC-CceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEEcCCCCe
Q 015873 166 TCSWLRPDGKTQVTVEYYNDN-GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 244 (399)
Q Consensus 166 ~~~~l~PD~KsQVtv~Y~~~~-g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~F 244 (399)
.+|||||||||||||+|+++. +.++|+||+|||||+||++++++++||++|+++||+|++|.+|++++|+|||||||||
T Consensus 165 ~~~~L~PD~KsQVtv~Y~~~~~~~~~P~~i~tivvS~QH~~~v~~~~l~~~i~~~vi~~v~~~~~~~~~t~~~INPtGrF 244 (398)
T PTZ00104 165 ILPWLRPDAKTQVTVEYEYDTRGGLTPKRVHTILISTQHDEGVSNEEIREDLMEHVIKPVIPAKLLDEETKYHLNPSGRF 244 (398)
T ss_pred CCCeeccCCceEEEEEeccCCCCCccceeEEEEEEccccCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCe
Confidence 999999999999999996531 1158999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeE
Q 015873 245 VIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSV 324 (399)
Q Consensus 245 viGGP~~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi 324 (399)
|+|||+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+|+||||
T Consensus 245 viGGP~gDtGLTGRKIiVDTYGG~a~HGGGAFSGKDptKVDRSaAY~ARyiAKniVAAGlA~~ceVQlsYAIGva~Pvsi 324 (398)
T PTZ00104 245 VIGGPHGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPSKVDRSAAYAARWIAKSLVAAGLCKRCLVQVSYAIGVAEPLSI 324 (398)
T ss_pred EeCCCcccccccCceEEEEcCCCccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhccccceEEEEEEEcccCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCC--ChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCCCCCCCccccccccccCCC
Q 015873 325 FVDSYGTGKI--PDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 398 (399)
Q Consensus 325 ~V~tfgt~~~--~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~~~ 398 (399)
+||||||+++ ++++|.++|+++|||||++||++|+|++| +|++||+||||||++++||||++|++++.++-
T Consensus 325 ~V~TfGT~~~~~~~~~i~~~v~~~Fdl~P~~II~~L~L~~P---iY~~ta~yGHFGr~~~~f~WE~~d~~~~~~~~ 397 (398)
T PTZ00104 325 HVNTYGTGKKGYDDEDLLEIVQKNFDLRPGDIIKELDLRRP---IFQKTASYGHFGRSDPEFTWEVPKDLEHEKDV 397 (398)
T ss_pred EEecCCCcccCCCHHHHHHHHHHHcCCCHHHHHHHhCCCCh---hhhhhhccCccCCCCCCCCccccchhcccccC
Confidence 9999999999 99999999999999999999999999999 99999999999999888999999999987753
No 4
>PRK05250 S-adenosylmethionine synthetase; Validated
Probab=100.00 E-value=2.1e-185 Score=1369.90 Aligned_cols=378 Identities=61% Similarity=0.998 Sum_probs=369.2
Q ss_pred ceeEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCC
Q 015873 9 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDD 88 (399)
Q Consensus 9 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 88 (399)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||++++||++|++|||++++
T Consensus 2 ~~lfTSESV~eGHPDKicDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~a~vD~~~ivR~~i~~IGY~~~~ 81 (384)
T PRK05250 2 RYLFTSESVSEGHPDKIADQISDAILDAILAQDPNARVACETLVTTGLVVVAGEITTSAYVDIEEIVRETIKEIGYTSSE 81 (384)
T ss_pred CceEeecCCCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEeCCccCCHHHHHHHHHHHcCCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHcCCCC
Q 015873 89 VGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 168 (399)
Q Consensus 89 ~gfd~~t~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~~~~~ 168 (399)
+|||+++|.|+++|++|||||+|||+.+ ..+++|||||||||||||||||+|||||++|||+|++||+++||+|.+|
T Consensus 82 ~gfd~~~~~v~~~i~~QSpdIa~gV~~~---~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~~~~~ 158 (384)
T PRK05250 82 YGFDANTCAVLVSIGEQSPDIAQGVDRD---ELDEIGAGDQGIMFGYACNETPELMPLPITLAHRLVRRLAEVRKSGTLP 158 (384)
T ss_pred cCcCCCceEEEeecCCCChhHHhhhCcc---ccccCCCCCceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999852 2346899999999999999999999999999999999999999999999
Q ss_pred cccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEEcCCCCeEEcc
Q 015873 169 WLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 248 (399)
Q Consensus 169 ~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGG 248 (399)
||||||||||||+|++ + +|+||++||||+||++++++++||++|+|+||+|++|++|++++|+||||||||||+||
T Consensus 159 ~l~PD~KtQVtv~Y~~--~--~p~~i~tiviS~QH~~~~~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGG 234 (384)
T PRK05250 159 YLRPDAKSQVTVEYEN--G--KPVRIDTIVVSTQHDPDVSQEQLREDVIEEVIKPVLPAELLDEDTKFLINPTGRFVIGG 234 (384)
T ss_pred eecCCCceEEEEEEEC--C--ceeeEEEEEEeccCCCCCCHHHHHHHHHHHHhHHhcccccCCCCeEEEECCCCCeEeCC
Confidence 9999999999999974 5 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeEEEEe
Q 015873 249 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDS 328 (399)
Q Consensus 249 P~~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi~V~t 328 (399)
|+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+|+||||+|||
T Consensus 235 P~gDtGLTGRKIiVDTYGG~a~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaaglA~~ceVQlsYAIGva~Pvsi~Vdt 314 (384)
T PRK05250 235 PQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSIYVDT 314 (384)
T ss_pred CcccccccCceEEEEcCCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCCCceEEEEEEeeccccCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCCCCCCCccccccccccC
Q 015873 329 YGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 396 (399)
Q Consensus 329 fgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~ 396 (399)
|||+++++++|.++|+++|||||++||++|+|++| ||++||+||||||++++||||++|+++.|+
T Consensus 315 fGt~~~~~~~i~~~v~~~Fdl~P~~Ii~~L~L~~p---iY~~ta~yGHFGr~~~~fpWE~~d~v~~l~ 379 (384)
T PRK05250 315 FGTGKVSDEKIEEAVREVFDLRPAGIIKMLDLRRP---IYRKTAAYGHFGREDLDFPWEKTDKVEALK 379 (384)
T ss_pred CCCCCCCHHHHHHHHHHHcCCCHHHHHHHhCCCCc---cchhhcccCCCCCCCCCCCCcccchHHHHH
Confidence 99999999999999999999999999999999999 999999999999998899999999988764
No 5
>PRK12459 S-adenosylmethionine synthetase; Provisional
Probab=100.00 E-value=2.2e-185 Score=1370.49 Aligned_cols=379 Identities=58% Similarity=0.952 Sum_probs=366.1
Q ss_pred ccceeEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCC
Q 015873 7 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVS 86 (399)
Q Consensus 7 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 86 (399)
|++||||||||++||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+|+||+++|||++|++|||+
T Consensus 1 m~~~lfTSESV~eGHPDKicDqISDaILDa~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vdi~~ivR~~i~~IGY~- 79 (386)
T PRK12459 1 MSTFLFTSESVTEGHPDKLCDQISDAILDACLRQDPASRVACEVLVSTGIVIVAGEITSSAKVDIEKIVRNVIKEIGYD- 79 (386)
T ss_pred CCceeEEecCCCCCCccHHHhhHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEccCccCCHHHHHHHHHHHhCCC-
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeecCCChhhhcccCCCCC--CCCCCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHc
Q 015873 87 DDVGLDADHCKVLVNIEQQSPDIAQGVHGHFT--KRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKN 164 (399)
Q Consensus 87 ~~~gfd~~t~~v~~~i~~QS~dIa~gV~~~~~--~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~ 164 (399)
++|||+++|.|+++|++|||||+|||+.+.+ +..+++|||||||||||||||||+||||||+|||+|++||+++||+
T Consensus 80 -~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~l~~~l~~~Rk~ 158 (386)
T PRK12459 80 -ELGFDPRTCTVLVSLGEQSPDIAQGVDTAEGRDEELEELGAGDQGTMFGYACDETPELMPLPIVLAHRLAKRLDQARKD 158 (386)
T ss_pred -CCCCCCCceEEEeccccCChhHhcccccccccccccccCCCCcceEeeeeecCCCcccCChHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999974321 1124589999999999999999999999999999999999999999
Q ss_pred CCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEEcCCCCe
Q 015873 165 STCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 244 (399)
Q Consensus 165 ~~~~~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~F 244 (399)
|.+|||||||||||||+|++ + +|+||+|||||+||++++++++++++|+++||+|++|++|++++|+|||||||||
T Consensus 159 g~~~~l~PD~KsQVtv~Y~~--~--~P~rv~tivvS~QH~~~v~~~~~~~~i~e~vi~~v~~~~~~~~~t~~~INPtGrF 234 (386)
T PRK12459 159 GLLPGLLPDGKTQVTVEYED--G--RPVRVDTIVVSAQHDESVDLETLRRDVIENVIKPVFEDFWLDDETRILINPTGRF 234 (386)
T ss_pred CCCCeecCCCceEEEEEeeC--C--ceeEEEEEEEeeccCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCe
Confidence 99999999999999999974 5 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeE
Q 015873 245 VIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSV 324 (399)
Q Consensus 245 viGGP~~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi 324 (399)
|+|||+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+|+||||
T Consensus 235 viGGP~gD~GLTGRKIiVDTYGG~~~HGGGAFSGKDptKVDRSaAY~AR~iAKniVaAGlA~~ceVQlsYAIGva~Pvsi 314 (386)
T PRK12459 235 VVGGPAADTGLTGRKIMVDTYGGYARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLAKRCEVQLSYAIGKARPVSV 314 (386)
T ss_pred EeCCCcccccccCceEEEEcCCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCccceEEEEEEeecccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCCCCCCCccccccccccC
Q 015873 325 FVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 396 (399)
Q Consensus 325 ~V~tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~ 396 (399)
+||||||+++++++|.++|+++|||||++||++|+|++| +|++||+||||||+ +||||++|+++.|+
T Consensus 315 ~V~TfGT~~~~~~~i~~~i~~~Fdl~P~~Ii~~L~L~~p---iY~~ta~yGHFGr~--~f~WE~~d~~~~l~ 381 (386)
T PRK12459 315 QVNTFGTGTVSDEELTRAVREHFDLRPAGIIEKLNLRNP---IYRKTAAYGHFGRT--LFPWEKTDKAALLR 381 (386)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHcCCCHHHHHHHcCCCCc---hhhhhcccCCCCCC--CCCcccccHHHHHH
Confidence 999999999999999999999999999999999999999 99999999999997 59999999988765
No 6
>TIGR01034 metK S-adenosylmethionine synthetase. Tandem isozymes of this S-adenosylmethionine synthetase in E. coli are designated MetK and MetX.
Probab=100.00 E-value=6.6e-185 Score=1362.55 Aligned_cols=374 Identities=60% Similarity=1.001 Sum_probs=365.1
Q ss_pred eEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCCCC
Q 015873 11 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVG 90 (399)
Q Consensus 11 lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~~g 90 (399)
|||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||++++||++|++|||+++++|
T Consensus 1 lfTSESV~eGHPDKicDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~~~vd~~~ivR~~i~~IGY~~~~~g 80 (377)
T TIGR01034 1 LFTSESVSEGHPDKIADQISDAVLDAILKQDPKAKVACETFVKTGLVLIGGEITTSAYVDIQEVARNTIKDIGYTDSDYG 80 (377)
T ss_pred CCccCcCCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcCCccCCHHHHHHHHHHHhCCCCcccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHcCCCCcc
Q 015873 91 LDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWL 170 (399)
Q Consensus 91 fd~~t~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~~~~~~l 170 (399)
||+++|.|+++|++|||||+|||+++. .+++|||||||||||||||||+||||||+|||+|++||+++||+|.+|||
T Consensus 81 fd~~t~~v~~~i~~QSpDIa~gV~~~~---~~~iGAGDQGimfGYA~~ET~e~MPl~i~lAh~l~~~l~~~Rk~g~~~~l 157 (377)
T TIGR01034 81 FDAKTCAVLVAIGNQSPDIAQGVDKAN---PEEQGAGDQGIMFGYATNETPELMPLPITLAHKLLKRAAELRKSGTLPWL 157 (377)
T ss_pred CCCCceEEEecCCCCChHHHhccccCc---cccCCCCcceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCCee
Confidence 999999999999999999999998531 23589999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEEcCCCCeEEccCC
Q 015873 171 RPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPH 250 (399)
Q Consensus 171 ~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~ 250 (399)
||||||||||+|++ + +|+||+|||||+||++++++++++++|+++||+|++|++|++++|+||||||||||+|||+
T Consensus 158 ~PD~KtQVtveY~~--~--~P~rv~tivvS~QH~~~v~~~~l~~~i~~~vi~~v~~~~~~~~~t~~~INPtGrFviGGP~ 233 (377)
T TIGR01034 158 RPDGKSQVTVQYED--N--KPVRVDTIVLSTQHDPDISQKDLREAIIEEIIKPVLPAEYLDEKTKFFINPTGRFVIGGPM 233 (377)
T ss_pred cCCCceEEEEEEEC--C--ceeEEEEEEEecCCCCCCCHHHHHHHHHHHHhHHhcCcccCCCCcEEEECCCCCeEeCCCc
Confidence 99999999999964 5 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeEEEEecC
Q 015873 251 GDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYG 330 (399)
Q Consensus 251 ~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi~V~tfg 330 (399)
||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+|+||||+|||||
T Consensus 234 gDtGLTGRKIiVDTYGG~~~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaAgla~~c~VQlsYaIGva~Pvsi~V~tfG 313 (377)
T TIGR01034 234 GDTGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLADRCEVQLSYAIGVAEPVSIMIETFG 313 (377)
T ss_pred cccccccceEEEeccCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCcceeEEEEEEEcCcCCCceEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCCCCCCCccccccccccC
Q 015873 331 TGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 396 (399)
Q Consensus 331 t~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~ 396 (399)
|+++++++|.++|+++|||||++||++|+|++| +|++||+||||||+ +||||++|+++.|+
T Consensus 314 T~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~p---iY~~ta~yGHFGr~--~~~WE~~d~~~~l~ 374 (377)
T TIGR01034 314 TSKKSEEELLNVVKENFDLRPGGIIEKLDLLKP---IYRKTAVYGHFGRE--EFPWEKPDKLEELK 374 (377)
T ss_pred CccCCHHHHHHHHHHhcCCCHHHHHHHhCCCCc---hhhhhcccCCCCCC--CCCccccchHHHHH
Confidence 999999999999999999999999999999999 99999999999997 69999999988775
No 7
>KOG1506 consensus S-adenosylmethionine synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.3e-177 Score=1271.34 Aligned_cols=382 Identities=74% Similarity=1.161 Sum_probs=374.8
Q ss_pred cccceeEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCC
Q 015873 6 KMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFV 85 (399)
Q Consensus 6 ~~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~ 85 (399)
++.+||||||||+||||||||||||||||||||+|||+|+|||||..++|||+++|||||+|.|||+++||++++.|||+
T Consensus 2 ~~~tFLFTSESVgEGHPDKmCDQISDAiLDAhLkqDP~aKVACETv~KTgMiml~GEITska~vDYqkvVR~tik~IGyd 81 (383)
T KOG1506|consen 2 DMETFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVTKTGMIMLCGEITSKAVVDYQKVVRDTIKKIGYD 81 (383)
T ss_pred CCceeEEeeccccCCCchHHHHHHHHHHHHHHhhcCCCceeeeeeccccceEEEeeeccchhhhhHHHHHHHHHHHhCCc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHcC
Q 015873 86 SDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNS 165 (399)
Q Consensus 86 ~~~~gfd~~t~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~~ 165 (399)
++..|||++||+|+++|++|||||||||+- ++..+++||||||||||||||||||+|||++.|||+|..+|+++|++|
T Consensus 82 dsskGfD~ktcnvLvaieQQSPdIAqgvH~--~k~~edvGAGDQgimfGYATdet~e~mplt~~lahkln~~l~~~rr~g 159 (383)
T KOG1506|consen 82 DSSKGFDYKTCNVLVAIEQQSPDIAQGVHV--DKDEEDVGAGDQGIMFGYATDETPECMPLTIVLAHKLNAKLAELRRNG 159 (383)
T ss_pred ccccCccccccceeeeecccCchhhhcccc--cCCHhHcCCCcceeEeeeecCCCccccchHHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999999994 456678999999999999999999999999999999999999999999
Q ss_pred CCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEEcCCCCeE
Q 015873 166 TCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFV 245 (399)
Q Consensus 166 ~~~~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~Fv 245 (399)
++||||||+|||||+||.+++|++.|.||||||||+||+++|++++||++++|+||++|+|++++|++|.|||||+||||
T Consensus 160 ~l~WlRpdsktqVTvey~~~~Ga~vP~rVhtvviS~QH~~~is~~~lr~~l~e~vik~viPa~~lDe~Tiyhl~PsGrFv 239 (383)
T KOG1506|consen 160 TLPWLRPDSKTQVTVEYMNDNGAMVPLRVHTVVISTQHSEDITLDDLRAELKEKVIKPVIPAKYLDEKTIYHLNPSGRFV 239 (383)
T ss_pred cccccccCCcceEEEEEecCCCceeeeEEEEEEEecccCccccHHHHHHHHHHhhhhhcCcHhhcCccceEEecCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeEE
Q 015873 246 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF 325 (399)
Q Consensus 246 iGGP~~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi~ 325 (399)
||||+||+|||||||||||||||++||||||||||||||||||||+|||+||++|+||||+||+||+|||||+++|+||+
T Consensus 240 iGGP~GDAGlTGRKIIvDtYGGwgahGGGAFSGKD~tKVDRSaAYaaRwvAkSlV~aGl~rR~lVQvSYAIGvaePlSv~ 319 (383)
T KOG1506|consen 240 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVAAGLCRRCLVQVSYAIGVAEPLSVF 319 (383)
T ss_pred ecCCCcccccccceEEEeccCcccccCCcccCCCCccccchHHHHHHHHHHHHHHHhhhhhheeeEEeeeecCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCCCCCCCccccccccc
Q 015873 326 VDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 394 (399)
Q Consensus 326 V~tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~ 394 (399)
|+||||+..+++||.++|++||||||+.|+++|+|+|| ||.+||+|||||+. +||||++.+|++
T Consensus 320 v~~ygTs~~s~~ell~iv~~nFDlrPG~ivk~LdLkrp---iy~~Ta~yGHFg~~--~f~WE~pk~Lk~ 383 (383)
T KOG1506|consen 320 VFTYGTSTKSDKELLEIVKKNFDLRPGMIVKNLDLKRP---IYLKTAAYGHFGDQ--EFPWEVPKPLKI 383 (383)
T ss_pred EEeccCCCCCHHHHHHHHHhccCCCCceEEeecccccc---cccccccccccCCC--CCCccccccCCC
Confidence 99999999999999999999999999999999999999 99999999999985 599999999874
No 8
>PF02773 S-AdoMet_synt_C: S-adenosylmethionine synthetase, C-terminal domain; InterPro: IPR022630 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the C-terminal domain of S=adenosylmethionine synthetase and is found in association with PF00438 from PFAM and PF02772 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3IML_B 1QM4_B 1O9T_B 1O93_A 1O92_B 1O90_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C ....
Probab=100.00 E-value=2.4e-83 Score=564.01 Aligned_cols=138 Identities=70% Similarity=1.235 Sum_probs=121.9
Q ss_pred EccCCCCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeEE
Q 015873 246 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF 325 (399)
Q Consensus 246 iGGP~~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi~ 325 (399)
||||+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 1 iGGp~~D~GlTGRKiivDtYGg~~~hGGGafSGKD~tKvDRsaaY~aR~iAKniVaagla~~c~vqlsYaIGv~~P~si~ 80 (138)
T PF02773_consen 1 IGGPQGDTGLTGRKIIVDTYGGWARHGGGAFSGKDPTKVDRSAAYMARYIAKNIVAAGLAKRCEVQLSYAIGVAEPVSIY 80 (138)
T ss_dssp S-TTTTSEEETTSSTTTTTTTTSSB-BS---TTB-TTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEE-TT-SS-SEEE
T ss_pred CCCCccccccccceEEEecccCceecCCccccCCChhhhhccHHHHHHHHHHHHHHccchHHHHhhceeeeccccCcccE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCCCCCCCccc
Q 015873 326 VDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEV 388 (399)
Q Consensus 326 V~tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~ 388 (399)
||||||+++++++|.++|+++|||||++||++|+|++| ||++||+||||||++ |||||
T Consensus 81 v~tfgT~~~~d~~i~~~I~~~Fdl~P~~II~~L~L~~P---iY~~TA~yGHFGr~~--~~WE~ 138 (138)
T PF02773_consen 81 VDTFGTGKISDEEILEIIKENFDLRPAGIIKELDLRRP---IYRKTAAYGHFGRED--FPWEK 138 (138)
T ss_dssp EEETT-BSS-HHHHHHHHHHHS--SHHHHHHHCTTTSS---THGGGGSS-SSSSTT--SGGG-
T ss_pred EEeCCCccchHHHHHHHHHHHhCCcHHHHHHHhCcCCc---hhHhhhCcCCCCCCC--CCCCC
Confidence 99999999999999999999999999999999999999 999999999999976 99997
No 9
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=100.00 E-value=7.6e-57 Score=390.09 Aligned_cols=119 Identities=64% Similarity=1.034 Sum_probs=108.0
Q ss_pred CCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHcCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeee
Q 015873 123 DIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQ 202 (399)
Q Consensus 123 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~~~~~~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~Q 202 (399)
++|||||||||||||||||+||||||+|||+|++||+++|++|.+|||||||||||||+|+++ + +|+||++||||+|
T Consensus 2 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~R~~~~~~~l~PD~KsQVtveY~~~-~--~P~ri~tivvS~Q 78 (120)
T PF02772_consen 2 EIGAGDQGIMFGYACDETPELMPLPIVLAHRLARRLAEVRKNGELPWLRPDGKSQVTVEYDEN-G--KPVRIDTIVVSTQ 78 (120)
T ss_dssp CCSBSS-EEEEEEEETTSTTSS-HHHHHHHHHHHHHHHHHHTSSSTTEEEEEEEEEEEEEEET-T--EEEEEEEEEEEEE
T ss_pred CcCcCcceEEEeeEcCCCCccCChHHHHHHHHHHHHHHHHhcccCcccCCCcceeEEEeeccC-C--ceeeeeEEEEEec
Confidence 689999999999999999999999999999999999999999999999999999999999654 5 9999999999999
Q ss_pred cCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEEcCCCCe
Q 015873 203 HDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 244 (399)
Q Consensus 203 H~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~F 244 (399)
|++++++++||++|+++||+||+|+++++++|+|+|||||||
T Consensus 79 H~~~i~~~~ir~~i~e~Vi~~v~~~~~~~~~t~~~INPtGrF 120 (120)
T PF02772_consen 79 HDEDISLEEIREDIKEKVIKPVIPEYLLDEDTKILINPTGRF 120 (120)
T ss_dssp E-TTS-HHHHHHHHHHHTHHHHSHGGG-BTT-EEEESTTS--
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcccccCCCCcEEEECCCCCC
Confidence 999999999999999999999999999999999999999998
No 10
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the N-terminal domain of S-adenosylmethionine synthetase and is found in association with PF02772 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3RV2_A 3TDE_B 3S82_B 3IML_B 2P02_A 2OBV_A 1QM4_B 1O9T_B 1O93_A 1O92_B ....
Probab=100.00 E-value=3.1e-49 Score=333.16 Aligned_cols=100 Identities=61% Similarity=1.034 Sum_probs=93.2
Q ss_pred cceeEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 015873 8 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 87 (399)
Q Consensus 8 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 87 (399)
++||||||||++||||||||||||||||+||++||+|||||||++++|+|+|+|||++++++|++++||++|++|||+++
T Consensus 1 ~~~lfTSESV~~GHPDKicDqISDailD~~l~~dp~arVA~E~~~~~~~v~i~GEi~~~~~vd~~~ivR~~i~~IGY~~~ 80 (100)
T PF00438_consen 1 KKYLFTSESVSEGHPDKICDQISDAILDACLKQDPNARVACETLVSTGMVIIAGEITSRAYVDIEKIVREVIKDIGYDDS 80 (100)
T ss_dssp -EEEEEEEEE-TTSHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEETTEEEEEEEEESSHHHTHHHHHHHHHHHHT-EEG
T ss_pred CceEEeeccccCCCchhhhceeeeccchHHHhcCCCCeEEEEEEeeccEEEEEEEeccchhhhHHHHHHHHHHHhCCCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeecCCCh
Q 015873 88 DVGLDADHCKVLVNIEQQSP 107 (399)
Q Consensus 88 ~~gfd~~t~~v~~~i~~QS~ 107 (399)
++|||+++|+|+++|++|||
T Consensus 81 ~~gfd~~tc~V~~~i~~QSp 100 (100)
T PF00438_consen 81 EYGFDYDTCEVLVAIHEQSP 100 (100)
T ss_dssp GGTEETTTSEEEEEEEEE-H
T ss_pred cCCCCCCcceEEEeecccCc
Confidence 99999999999999999998
No 11
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=98.87 E-value=3.5e-07 Score=93.73 Aligned_cols=305 Identities=23% Similarity=0.305 Sum_probs=185.0
Q ss_pred ccCCCCChhhhhhhHHHHHHH----Hhhc---------CCCCeEEEEEEee--eC------eEEEEEEeeeee---eccH
Q 015873 16 SVNEGHPDKLCDQISDAVLDA----CLEQ---------DPESKVACETCTK--TN------MVMVFGEITTKA---KVDY 71 (399)
Q Consensus 16 SV~eGHPDKicDqISDaILDa----~L~~---------Dp~arVA~E~~v~--~~------~v~i~GEitt~a---~vd~ 71 (399)
==+-||||-|||-|++++=-+ ||++ |+---||-++.-+ .| .++++|..|+.. .+.+
T Consensus 24 RKGiGHPDticD~iaE~~S~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~g~~iPv 103 (399)
T PRK04439 24 RKGIGHPDTICDGIAEAVSRALSRYYLEKFGAILHHNTDKVLLVGGRSAPKFGGGEVIEPIYIILGGRATKEVGGEEIPV 103 (399)
T ss_pred ecCCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEccEEeccCCCceEEeeEEEEEecceeeeECCeEecH
Confidence 336799999999999987544 2332 6666666665433 22 357889888753 3788
Q ss_pred HHHHHHHHHhhCCCC-CCCCCCCCc-eEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCCchHH
Q 015873 72 EKIVRDTCRSIGFVS-DDVGLDADH-CKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHV 149 (399)
Q Consensus 72 ~~ivR~~i~~IGY~~-~~~gfd~~t-~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~ 149 (399)
.+|+.++.++ |=. .--.+|.+. ..|...+.+-|+|+..-..+. ..-.+|-|.....||| ||+
T Consensus 104 ~~Ia~~Aak~--~L~~~l~~lD~e~hv~i~~~i~~GS~dL~~vF~r~----~~vp~ANDTS~gVGyA--------PlS-- 167 (399)
T PRK04439 104 GEIAIEAAKE--YLRENLRNLDPERHVIIDVRLGPGSTDLVDVFERE----SIVPLANDTSFGVGYA--------PLS-- 167 (399)
T ss_pred HHHHHHHHHH--HHHHhCccCCccccEEEEEeeCCCcHHHHHHhCCC----CCccccccccceeecC--------CCC--
Confidence 8776555444 111 112345543 567788899999998655421 1134899999999997 442
Q ss_pred HHHHHHHHHHHHHHc----CCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEe----eecCCCCCh-HHHHHHHHHhh
Q 015873 150 LATKLGARLTEVRKN----STCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLIS----TQHDETVTN-DEIAADLKEHV 220 (399)
Q Consensus 150 lAh~L~~rl~~~Rk~----~~~~~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS----~QH~~~v~~-~~l~~~i~e~V 220 (399)
--.+|+..++..=.+ ..+|+.+.|-|.-- +++. . ++ ++.|. ..|-.+++. -+.++.+++.|
T Consensus 168 ~~E~~Vl~~E~~lns~~~k~~~P~~GeDiKVMG---~R~g-~-----~i-~lTVa~a~v~r~v~~~~~Y~~~k~~v~~~v 237 (399)
T PRK04439 168 ETERLVLETERYLNSEEFKKRFPEVGEDIKVMG---LRNG-D-----EI-TLTIAMALVDRYVNDVDEYFEVKEEVKEKV 237 (399)
T ss_pred HHHHHHHHHHHHhcCcchhhcCCCcCCCeEEEE---EEcC-C-----EE-EEEEEhHHhhhhcCCHHHHHHHHHHHHHHH
Confidence 234444444443322 46899999999752 3332 1 11 22222 133333331 24455555554
Q ss_pred cccccCCCCCCCCcEEEEcCCCCe-------EEcc---CCCCcCCCCceEEEecC-CCccccccccCcCCCC-Cccchhh
Q 015873 221 IKPVIPEKYLDEKTIFHLNPSGRF-------VIGG---PHGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDP-TKVDRSG 288 (399)
Q Consensus 221 i~~v~~~~~~~~~t~~~INPtG~F-------viGG---P~~DtGLTGRKiiVDTY-GG~a~HGGGAfSGKDp-tKVDRSa 288 (399)
-.-+ +.+.+.+..++||..-.- ++=| =+||.|.+||=.=|--- -++-|-+==|=+||.| +-|=.-=
T Consensus 238 ~~~a--~~~~~~~v~v~iNt~D~~~~~~~YLTVtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVGKIY 315 (399)
T PRK04439 238 EDLA--QKYTDRDVEVHINTADDPDEGGVYLTVTGTSAEMGDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIY 315 (399)
T ss_pred HHHH--HhhCCCceEEEEeCCCCCCCCcEEEEeceeehhccCCcccCcCcccCcccCCCCCccccccCCCCCcccchHHH
Confidence 4322 345556778999986642 2222 26899999995433211 1233445568899998 3455566
Q ss_pred hHHHHHHHHHHHhh-ccccccEEEEEEEeccc--cceeEEEEecCCCCCChH----HHHHHHHHhCC
Q 015873 289 AYIVRQAAKSIVAN-GLARRCIVQVSYAIGVP--EPLSVFVDSYGTGKIPDK----EILKIVKESFD 348 (399)
Q Consensus 289 AY~AR~iAKniVaa-Gla~~ceVQlsYAIGva--~Pvsi~V~tfgt~~~~~~----~i~~~v~~~Fd 348 (399)
..+|..||+.|++. .=.++|.|.|---||.| +|..+.+...-.....-+ ++.+++.+.++
T Consensus 316 NvlA~~iA~~i~~~v~gv~ev~V~llSqIG~PId~P~~a~v~v~~~~g~~~~~~~~~v~~I~~~~L~ 382 (399)
T PRK04439 316 NVLANRIAREIYEEVEGVKEVYVRLLSQIGKPIDEPLVASIQVIPEDGVLISDVEKEVEEIVDEELA 382 (399)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEEeccCCCcCCCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHh
Confidence 77899999999984 22779999999999976 788777776533223333 34555544433
No 12
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=98.86 E-value=4e-07 Score=93.21 Aligned_cols=308 Identities=23% Similarity=0.269 Sum_probs=187.8
Q ss_pred cccCCCCChhhhhhhHHHHHHHH----hhc---------CCCCeEEEEEEee--------eCeEEEEEEeeeee---ecc
Q 015873 15 ESVNEGHPDKLCDQISDAVLDAC----LEQ---------DPESKVACETCTK--------TNMVMVFGEITTKA---KVD 70 (399)
Q Consensus 15 ESV~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v~--------~~~v~i~GEitt~a---~vd 70 (399)
|==+-||||-|||-|++++=-++ |+. |+---||-++.-+ .=.|+++|..|+.. .++
T Consensus 23 ERKGiGHPDtIcD~iaE~vS~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~~~~iP 102 (396)
T PF01941_consen 23 ERKGIGHPDTICDGIAEAVSRALSRYYLERFGAILHHNTDKVLLVGGRSEPKFGGGEVIEPIYIILGGRATKEVGGEKIP 102 (396)
T ss_pred EecCCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEEeccCCCceeeeeEEEEEecceeeccCCeecc
Confidence 33467999999999999875443 222 6666666665433 22578899988764 678
Q ss_pred HHHHHHHHHHhhCCCC-CCCCCCCC-ceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCCchH
Q 015873 71 YEKIVRDTCRSIGFVS-DDVGLDAD-HCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSH 148 (399)
Q Consensus 71 ~~~ivR~~i~~IGY~~-~~~gfd~~-t~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i 148 (399)
+.+|+.++.|+ |=. .--.+|.+ ...|...+.+-|+|+..-..... .-.+|-|..+..||| ||
T Consensus 103 v~~Ia~~aak~--~l~~~l~~lD~e~hv~i~~~i~~GS~dL~dvf~r~~----~vp~ANDTS~gVGyA--------Pl-- 166 (396)
T PF01941_consen 103 VDEIAIEAAKE--WLRENLRFLDPERHVIIDCRIGPGSPDLVDVFERGK----KVPLANDTSFGVGYA--------PL-- 166 (396)
T ss_pred HHHHHHHHHHH--HHHHhcccCCccccEEEEEeeCCCChHHHHHhcccc----cccccCCccceeccC--------Cc--
Confidence 88776655554 211 11235554 36788889999999987665421 135899999999997 33
Q ss_pred HHHHHHHHHHHHHHHc----CCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCCh-HHHHHHHHHhhccc
Q 015873 149 VLATKLGARLTEVRKN----STCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTN-DEIAADLKEHVIKP 223 (399)
Q Consensus 149 ~lAh~L~~rl~~~Rk~----~~~~~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~-~~l~~~i~e~Vi~~ 223 (399)
+-.-+|+..++..=.+ ..+|+.+.|-|.-- +++. ..+. +.|..-.|| .|-.+.+. -+.++.+++.+-.
T Consensus 167 S~~E~~Vl~~Er~lns~~fk~~~p~~GeDiKVMG---~R~g-~~i~-LTvA~a~v~-r~v~~~~~Y~~~k~~v~~~v~~- 239 (396)
T PF01941_consen 167 SETEKLVLETERYLNSPEFKKKFPEVGEDIKVMG---LREG-DKIT-LTVAMAFVD-RYVSSLDEYFERKEEVKEEVED- 239 (396)
T ss_pred cHHHHHHHHHHHHhccccccccCCCcCCCeEEEE---EEeC-CEEE-EEEEhhhhh-hhcCCHHHHHHHHHHHHHHHHH-
Confidence 2334444444443322 35899999999753 3332 1010 111111111 22232221 2344445444333
Q ss_pred ccCCCCCCCCcEEEEcCCCCeEEccC----------CCCcCCCCceEEEecC-CCccccccccCcCCCC-CccchhhhHH
Q 015873 224 VIPEKYLDEKTIFHLNPSGRFVIGGP----------HGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDP-TKVDRSGAYI 291 (399)
Q Consensus 224 v~~~~~~~~~t~~~INPtG~FviGGP----------~~DtGLTGRKiiVDTY-GG~a~HGGGAfSGKDp-tKVDRSaAY~ 291 (399)
.+.+. .+.+..++||..-.--.||+ +||.|.+||=.=|--- -++-|-+==|-+||.| +-|=.-=..+
T Consensus 240 ~a~~~-~~~~v~v~iNt~D~~~~~~~YLTvtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVGKIYNvl 318 (396)
T PF01941_consen 240 YAAKY-TDRDVEVHINTADDPEEGGVYLTVTGTSAEMGDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIYNVL 318 (396)
T ss_pred HHHHh-cCCceEEEEECCCCCCCCcEEEEeceeeccccCCcccCcccccccccCCCCCCcccccCCCCCcchhhHHHHHH
Confidence 33332 35667889998764333332 6999999995544321 1334556678899998 3455666788
Q ss_pred HHHHHHHHHhh-ccccccEEEEEEEeccc--cceeEEEEecCCCCCCh----HHHHHHHHHh
Q 015873 292 VRQAAKSIVAN-GLARRCIVQVSYAIGVP--EPLSVFVDSYGTGKIPD----KEILKIVKES 346 (399)
Q Consensus 292 AR~iAKniVaa-Gla~~ceVQlsYAIGva--~Pvsi~V~tfgt~~~~~----~~i~~~v~~~ 346 (399)
|.-+|+.|++. .=.++|.|.|-=-||.| +|..+.|.......+.- +++.+++.+.
T Consensus 319 A~~iA~~I~~~v~gv~ev~V~llSqIG~PId~P~~~~v~i~~~~~~~~~~~~~~v~~Ii~~~ 380 (396)
T PF01941_consen 319 ANEIAQRIYEEVDGVEEVYVRLLSQIGKPIDEPQIASVQIIPEDGVLLEDVEKEVEEIIDEE 380 (396)
T ss_pred HHHHHHHHHHhcCCcceEEEEEccccCCCCCCCeEEEEEEecCCCCchHHHHHHHHHHHHHH
Confidence 99999999984 23568999998889965 88888877765544333 3455555443
No 13
>COG1812 MetK Archaeal S-adenosylmethionine synthetase [Amino acid transport and metabolism]
Probab=98.05 E-value=0.00031 Score=71.71 Aligned_cols=288 Identities=23% Similarity=0.275 Sum_probs=164.0
Q ss_pred cccCCCCChhhhhhhHHHHHHHH----hhc---------CCCCeEEEEE--------EeeeCeEEEEEEeeee---eecc
Q 015873 15 ESVNEGHPDKLCDQISDAVLDAC----LEQ---------DPESKVACET--------CTKTNMVMVFGEITTK---AKVD 70 (399)
Q Consensus 15 ESV~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~--------~v~~~~v~i~GEitt~---a~vd 70 (399)
|==+-||||-|||-|+.+|=-++ |+. |.---|+-+. ++..=.+++.|.-|.. ..++
T Consensus 23 ERKGlGHPDsiaDgiAE~vsr~Ls~~YlerfG~IlHHN~Dk~~ivgG~s~p~FGGGevi~PIyIll~GRAt~~~~g~~ip 102 (400)
T COG1812 23 ERKGLGHPDSIADGIAEAVSRALSKYYLERFGVILHHNTDKVQIVGGQSAPKFGGGEVIEPIYILLSGRATKEVEGVEIP 102 (400)
T ss_pred eecCCCCChhHHHHHHHHHHHHHHHHHHHHhCceeccccceeEEEcccccccCCCcceeeeEEEEEecceeeeecCeecc
Confidence 34467999999999988875543 222 2211222211 1222235677776643 3456
Q ss_pred HHHHH----HHHHHhhCCCCCCCCCCCCce-EEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCC
Q 015873 71 YEKIV----RDTCRSIGFVSDDVGLDADHC-KVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMP 145 (399)
Q Consensus 71 ~~~iv----R~~i~~IGY~~~~~gfd~~t~-~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MP 145 (399)
+..|+ |+-|++. ---+|.+++ .+...|.+-|.|+..--.... .+--.|-|...+.||| |
T Consensus 103 ~~~ia~~AAk~yLr~~-----~r~LD~E~~Viid~rig~GS~dL~dvf~~~~---~~VplANDTSfgVG~A--------P 166 (400)
T COG1812 103 VGSIAIKAAKEYLREN-----LRNLDVENHVIIDVRIGQGSVDLVDVFERAK---EEVPLANDTSFGVGFA--------P 166 (400)
T ss_pred chHHHHHHHHHHHHhh-----cccCCccccEEEEeeccCCchhHHHHHhhcc---cCCcccccccceeccC--------C
Confidence 66554 4445442 123566644 566788899999876544321 1235899999999997 4
Q ss_pred chHHHHHHHHHHHHHH----HHcCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCCh-HHHHHHHHHhh
Q 015873 146 LSHVLATKLGARLTEV----RKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTN-DEIAADLKEHV 220 (399)
Q Consensus 146 l~i~lAh~L~~rl~~~----Rk~~~~~~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~-~~l~~~i~e~V 220 (399)
|+. ..+|+...+.. --...+|..+.|-|.-. ++ +++. --.+|.+-+||-. -++++. -++++.+++.|
T Consensus 167 Ls~--tErlV~etEr~lns~~~k~~~P~vGeDIKVMg-lR--~~~~--i~LTIa~a~V~~~-v~~~~~Y~~~ke~v~~~V 238 (400)
T COG1812 167 LSE--TERLVLETERYLNSPEFKKKLPAVGEDIKVMG-LR--EGDE--ISLTIAAALVDKY-VEDIDEYIEVKEEVRKHV 238 (400)
T ss_pred CcH--HHHHHHHHHHHhcChhhcccCCCcCCceEEEE-Ee--cCCe--EEEEEehHHHHHh-hcCHHHHHHHHHHHHHHH
Confidence 432 33443333322 22356899999999864 33 2111 2345555555533 444331 24444555544
Q ss_pred cccccCCCCCCCCcEEEEcCCCCeEEc----------cCCCCcCCCCceEEEecC-CCccccccccCcCCCCC-ccchhh
Q 015873 221 IKPVIPEKYLDEKTIFHLNPSGRFVIG----------GPHGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDPT-KVDRSG 288 (399)
Q Consensus 221 i~~v~~~~~~~~~t~~~INPtG~FviG----------GP~~DtGLTGRKiiVDTY-GG~a~HGGGAfSGKDpt-KVDRSa 288 (399)
-+- .++.-+.+-+.+||-.-...-| --+||.|.+||=.=|--- -.+-|-.==|-|||.|. -|=.-=
T Consensus 239 edl--A~~it~~~v~v~iNtaD~~e~~~~YlTvTGTSaE~GDdGsVGRGNR~nGLITp~RpmSmEAaaGKNPvnHVGKiY 316 (400)
T COG1812 239 EDL--ASEITDREVEVYINTADDPERGSVYLTVTGTSAEQGDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIY 316 (400)
T ss_pred HHH--HhhhhccceEEEEecccccccCeEEEEeccchhhhCCCcccccccccccccCCCCCcccccccCCCchhhhHHHH
Confidence 331 2222234456677765443222 247899999995433211 12334455688999995 344444
Q ss_pred hHHHHHHHHHHHhhc-cccccEEEEEEEeccc--cce--eEEEEe
Q 015873 289 AYIVRQAAKSIVANG-LARRCIVQVSYAIGVP--EPL--SVFVDS 328 (399)
Q Consensus 289 AY~AR~iAKniVaaG-la~~ceVQlsYAIGva--~Pv--si~V~t 328 (399)
...|-.||+-|+.+= =.++|.|+|-=-||.| +|. ++.|-+
T Consensus 317 N~La~~iA~~I~~ev~~v~evyv~ilsqIGkPId~P~~~~vqvi~ 361 (400)
T COG1812 317 NVLANQIANEIVEEVPGVEEVYVRILSQIGKPIDEPKVASVQVIT 361 (400)
T ss_pred HHHHHHHHHHHHHhcCCcceEEEehhhhcCCcCCCCceEEEEEEe
Confidence 567788888887653 2688989888889954 554 555555
No 14
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=56.33 E-value=17 Score=33.67 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=38.2
Q ss_pred cEEEEEEEeccccceeEEEEecCCCCCChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCC
Q 015873 308 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRD 380 (399)
Q Consensus 308 ceVQlsYAIGva~Pvsi~V~tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~ 380 (399)
|.+|..| +++.|-.+.| -++++..+++...|+..+ +- -...+.+-||||++
T Consensus 3 ~~~~~~~-------i~~rv~iHaT--ED~~kV~eAL~~~~p~~~----------~~---e~ev~~aeGhyGNp 53 (149)
T COG1325 3 GMMQSHY-------IEIRVIIHAT--EDEEKVLEALENFFPEAI----------DV---EIEVTEAEGHYGNP 53 (149)
T ss_pred Cccccce-------EEEEEEEEcc--CCHHHHHHHHHHhcCccc----------cc---ceEEEEeecccCCe
Confidence 6677777 4566666776 678899999999998875 11 35677889999975
No 15
>TIGR00590 pcna proliferating cell nuclear antigen (pcna). All proteins in this family for which functions are known form sliding DNA clamps that are used in DNA replication processes. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.70 E-value=98 Score=30.22 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeEEEEe
Q 015873 287 SGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDS 328 (399)
Q Consensus 287 SaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi~V~t 328 (399)
++.|..||+-+-.-|+++|+++++. +|...|+.+.-+-
T Consensus 204 ~~~y~l~YL~~~~Ka~~ls~~V~l~----~~~~~Pl~l~y~i 241 (259)
T TIGR00590 204 TLTFAIKYLNLFTKATPLSDRVTLS----MSNDVPLVVEYKI 241 (259)
T ss_pred eeeeeHHHHHHhhhhccCCCeEEEE----EcCCCCEEEEEEe
Confidence 4789999998877889999987665 5688899988873
No 16
>PRK11023 outer membrane lipoprotein; Provisional
Probab=50.17 E-value=27 Score=32.72 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=33.4
Q ss_pred hhhhhh-hHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeee
Q 015873 23 DKLCDQ-ISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITT 65 (399)
Q Consensus 23 DKicDq-ISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt 65 (399)
+...|. |+..|-.+++..+.-.-..+++-+.+|.|++.|+++.
T Consensus 121 ~~~~D~~It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v~~ 164 (191)
T PRK11023 121 TASKDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQ 164 (191)
T ss_pred cccCcHHHHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEeCH
Confidence 455554 7778888888876666667788888999999999964
No 17
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=46.22 E-value=35 Score=30.65 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=39.1
Q ss_pred ceeEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeee
Q 015873 9 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 66 (399)
Q Consensus 9 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~ 66 (399)
+.||.++.-- ++ ..+|+|+|+.++-++...+.- +.+-+.+|.|.+.|.+.+.
T Consensus 12 ~~~~~~~~~~---~~--~~~~~~~i~~~i~~~~~~~~~-i~V~v~~G~v~l~G~v~s~ 63 (147)
T PRK11198 12 EKLFDAVTAQ---AD--NEDAADALKEHISKQGLGDAD-VNVQVEDGKATVSGDAASQ 63 (147)
T ss_pred HHhcCCCCcc---cc--hHHHHHHHHHHHHhcCCCcCC-ceEEEeCCEEEEEEEeCCH
Confidence 4577644422 33 489999999998888766554 6788899999999998874
No 18
>PF02980 FokI_C: Restriction endonuclease FokI, catalytic domain; InterPro: IPR004233 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. Thie entry represents the type IIS restriction endonuclease FokI (3.1.21.4 from EC), which is a member of an unusual class of bipartite restriction enzymes that recognise a specific DNA sequence and cleave DNA nonspecifically a short distance away from that sequence []. FokI contains amino- and carboxy-terminal domains corresponding to the DNA-recognition (IPR004234 from INTERPRO) and cleavage functions, respectively. The catalytic domain contains only a single catalytic centre, raising the question of how monomeric FokI manages to cleave both DNA strands. The catalytic domain is sequestered in a 'piggyback' fashion by the recognition domain [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1FOK_A 2FOK_B.
Probab=44.83 E-value=20 Score=33.06 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=27.1
Q ss_pred cchhhhHHHHHHHHHHHhhccccccEEEEEEEecccc
Q 015873 284 VDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPE 320 (399)
Q Consensus 284 VDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~ 320 (399)
++=++==+|||||.-|+..||+.+....+.+-+|..+
T Consensus 77 ~EgTSDKYaR~I~~wL~k~glv~~~~k~vt~~~~~~~ 113 (142)
T PF02980_consen 77 WEGTSDKYARMICGWLKKVGLVEQKTKKVTRTIGGRK 113 (142)
T ss_dssp ---HHHHHHHHHHHHHHHTTSEEE--EEEE-BTTBTT
T ss_pred cccchHHHHHHHHHHHHHhchheecceEEEeeccCcc
Confidence 3446667899999999999999999999988777654
No 19
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=43.94 E-value=43 Score=34.31 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.4
Q ss_pred eeEeeecCCCCCCCCchHHHHHHH
Q 015873 131 HMFGYATDETSEFMPLSHVLATKL 154 (399)
Q Consensus 131 imfGYA~~ET~~~MPl~i~lAh~L 154 (399)
|++||||.+++.|-+-|-..-|++
T Consensus 3 iv~g~~~~h~~~l~~~~~~~~~~~ 26 (328)
T cd07366 3 IVAGMATSHGPMLVTPPEQWLHRL 26 (328)
T ss_pred eEEEeccCCCccccCChHHHHhcc
Confidence 899999999999988887666665
No 20
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=43.38 E-value=7 Score=30.36 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=25.9
Q ss_pred CCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCCchH
Q 015873 104 QQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSH 148 (399)
Q Consensus 104 ~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i 148 (399)
+.++|+-.-||-= + ----|+++|||.+-||-++=|-++|
T Consensus 11 ~~~~dlYKvVDfL--N----ktLK~~~lmFGLs~d~~~~k~vitI 49 (52)
T PF14084_consen 11 EYNDDLYKVVDFL--N----KTLKDKNLMFGLSKDEKEEKMVITI 49 (52)
T ss_pred cCCccHHHHHHHH--h----hhhhhccEEEEEeecCcCCEEEEEE
Confidence 4566777777621 1 1234899999999987777665544
No 21
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=36.24 E-value=1.2e+02 Score=28.38 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=60.2
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEEcCCCCeEEccCCCCcCCCCceEEEecCCC
Q 015873 192 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 267 (399)
Q Consensus 192 ~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 267 (399)
++|++||-|++=...+++++|...+..---.| -+|. .+-+++...+|=.||++++=|
T Consensus 2 ~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tG------------------- 62 (174)
T cd04518 2 LKIENIVASVDLGQELDLEKVAAELPNAEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTG------------------- 62 (174)
T ss_pred cEEEEEEEEEEcCCeecHHHHHhhCCCcEECCCcCcEEEEEccCCcEEEEEECCCeEEEEc-------------------
Confidence 47899999999999999999987755533333 2232 122467889999999999866
Q ss_pred ccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccc
Q 015873 268 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLA 305 (399)
Q Consensus 268 ~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla 305 (399)
.|--..+..+++.+++-|-..|.-
T Consensus 63 --------------aks~~~a~~a~~~~~~~L~~~g~~ 86 (174)
T cd04518 63 --------------AKSVEDLHRAVKEIIKKLKDYGIK 86 (174)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHhcCCC
Confidence 444467888899999999888854
No 22
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=35.14 E-value=45 Score=31.78 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=32.7
Q ss_pred cCCCCeEEEEEEeeeCe-------EEEEEEeeeeeeccHHHHHHHHHHh
Q 015873 40 QDPESKVACETCTKTNM-------VMVFGEITTKAKVDYEKIVRDTCRS 81 (399)
Q Consensus 40 ~Dp~arVA~E~~v~~~~-------v~i~GEitt~a~vd~~~ivR~~i~~ 81 (399)
-||+|+||+=||.++.. .-|+|-..|. ++=+++++++++.+
T Consensus 18 Gdp~S~VAV~TL~S~~~~~~l~~gaAI~G~~~TE-NlGIEKvI~NvisN 65 (176)
T PF04208_consen 18 GDPESPVAVCTLGSHLLQAPLDAGAAIAGPCKTE-NLGIEKVIANVISN 65 (176)
T ss_pred CCCCCCEEEEECccccchhhhhcCceeeeccccc-ccCHHHHHHHHhcC
Confidence 58999999999988655 4566766565 77899999999765
No 23
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=35.02 E-value=51 Score=26.83 Aligned_cols=57 Identities=25% Similarity=0.409 Sum_probs=40.2
Q ss_pred eeEEeEEEEeeecCCCCChHHHHHHHHHhhc-ccc-cCC---CCCCCCcEEEEcCCCCeEEcc
Q 015873 191 PVRVHTVLISTQHDETVTNDEIAADLKEHVI-KPV-IPE---KYLDEKTIFHLNPSGRFVIGG 248 (399)
Q Consensus 191 p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi-~~v-~~~---~~~~~~t~~~INPtG~FviGG 248 (399)
-.+|.+||-|..=.-++++++|...+ +.+- +|- +|. .+-++++.++|=+||++++-|
T Consensus 3 ~~~i~NIva~~~l~~~idL~~la~~~-~~~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itG 64 (86)
T PF00352_consen 3 DFKIVNIVASFDLPFEIDLEELAEEL-ENVEYEPERFPGLIYRLRNPKATVLIFSSGKIVITG 64 (86)
T ss_dssp EEEEEEEEEEEE-SSEB-HHHHHHHS-TTEEEETTTESSEEEEETTTTEEEEEETTSEEEEEE
T ss_pred ccEEEEEEEEEECCCccCHHHHHhhc-cCcEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEe
Confidence 36899999999989999999998877 4332 222 222 123467889999999999876
No 24
>PRK00394 transcription factor; Reviewed
Probab=33.18 E-value=1.6e+02 Score=27.62 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=57.2
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEEcCCCCeEEccCCCCcCCCCceEEEecCCC
Q 015873 192 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 267 (399)
Q Consensus 192 ~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 267 (399)
++|.+||-|++=...+++++|...+..---+| .+|. .+-+++..++|=.||++++=|
T Consensus 1 i~i~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG------------------- 61 (179)
T PRK00394 1 IKIENIVASTDLGQELDLEKVAEDLPNAEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG------------------- 61 (179)
T ss_pred CEEEEEEEEEEcCCCcCHHHHHhhCCCceeCcccCceEEEEecCCceEEEEEcCCcEEEEc-------------------
Confidence 36889999999999999999987654322233 2232 122467889999999999755
Q ss_pred ccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccc
Q 015873 268 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLA 305 (399)
Q Consensus 268 ~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla 305 (399)
.|--..+.-+++.+++.|-..|.-
T Consensus 62 --------------a~S~~~a~~a~~~~~~~l~~~g~~ 85 (179)
T PRK00394 62 --------------AKSVEDLHEAVKIIIKKLKELGIK 85 (179)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCCC
Confidence 222346777788888888877754
No 25
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=32.81 E-value=1.3e+02 Score=27.40 Aligned_cols=82 Identities=24% Similarity=0.306 Sum_probs=49.1
Q ss_pred EEEEEEeeeeeeccHHHHHHHHHHhhCCCCCCCCCCCCceEEEEe---ecCCChhhhcccCCCCCCCCCCCCCCcce---
Q 015873 57 VMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVN---IEQQSPDIAQGVHGHFTKRPEDIGAGDQG--- 130 (399)
Q Consensus 57 v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~t~~v~~~---i~~QS~dIa~gV~~~~~~~~~~~GAGDQG--- 130 (399)
|+..|.+|-..+--.+.++|+.|++.++.+....-+.+|...++. |.-.|||=.+-+.. ....+|--==||
T Consensus 6 ~~~~~~~~~~~~~~~~~li~e~I~K~~~~~~~kr~~nrtm~~~I~~~~v~lispdtK~vl~~---k~f~dISsC~qg~~~ 82 (129)
T cd01269 6 VLYCGRVTVTHKKAPSSLIDDCIEKFSLHEQQRLKDNRTMLFQVGRFEINLISPDTKSVVLE---KNFKDISSCSQGIKH 82 (129)
T ss_pred EEEEeeEEEeeccCChHHHHHHHHHhhhhhhhhccCCcEEEEEEeccceEEEcCCcceEEEe---cCccccchhhcCCCC
Confidence 667788876555557899999999999998777777777544332 12234444333321 111111111111
Q ss_pred -eeEeeecCCCC
Q 015873 131 -HMFGYATDETS 141 (399)
Q Consensus 131 -imfGYA~~ET~ 141 (399)
=-|||=|.||.
T Consensus 83 ~dhFgFIcrEs~ 94 (129)
T cd01269 83 VDHFGFICRESP 94 (129)
T ss_pred cceEEEEeccCC
Confidence 15999999987
No 26
>KOG3447 consensus Mitochondrial/chloroplast ribosomal S17-like protein [Translation, ribosomal structure and biogenesis]
Probab=29.61 E-value=19 Score=33.09 Aligned_cols=12 Identities=50% Similarity=0.584 Sum_probs=11.2
Q ss_pred CCCceEEEecCC
Q 015873 255 LTGRKIIIDTYG 266 (399)
Q Consensus 255 LTGRKiiVDTYG 266 (399)
+||||+.+|||-
T Consensus 95 vTGkk~~~~ty~ 106 (150)
T KOG3447|consen 95 VTGKKCAGDTYL 106 (150)
T ss_pred CcCccccCcchh
Confidence 799999999995
No 27
>PRK04964 hypothetical protein; Provisional
Probab=27.28 E-value=51 Score=26.74 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=20.9
Q ss_pred CCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHcCCC
Q 015873 122 EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTC 167 (399)
Q Consensus 122 ~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~~~~ 167 (399)
.+||.|||| |+|-+|..|-| .|.++-.+..+
T Consensus 13 a~IgSGd~g------------YiP~Ai~ca~k---~L~~IAad~~L 43 (66)
T PRK04964 13 AEIGSGDLG------------YVPDALGCVLK---ALNEIAADEAL 43 (66)
T ss_pred HHhcCCccc------------cCcHHHHHHHH---HHHHHhccccC
Confidence 369999998 58999988755 44444443333
No 28
>PRK10568 periplasmic protein; Provisional
Probab=25.93 E-value=1.1e+02 Score=28.84 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=25.3
Q ss_pred hHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeee
Q 015873 29 ISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 66 (399)
Q Consensus 29 ISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~ 66 (399)
|+..|-.+++..+.-..-.+.+-+.+|.|.+.|++.+.
T Consensus 61 I~~~v~~~L~~~~~i~~~~I~V~v~~G~V~L~G~V~s~ 98 (203)
T PRK10568 61 ITAKVKAALVDHDNIKSTDISVKTHQKVVTLSGFVESQ 98 (203)
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEECCEEEEEEEeCCH
Confidence 44455555554332333457777889999999999875
No 29
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=25.42 E-value=3.5e+02 Score=29.02 Aligned_cols=97 Identities=16% Similarity=0.196 Sum_probs=60.5
Q ss_pred CeEEEEEEeeeCeEEE--EEEeeeeeeccHH---HHHHHHHHhhCCCCCCCC--CCCCceEEEEeecCCChhhhcccCCC
Q 015873 44 SKVACETCTKTNMVMV--FGEITTKAKVDYE---KIVRDTCRSIGFVSDDVG--LDADHCKVLVNIEQQSPDIAQGVHGH 116 (399)
Q Consensus 44 arVA~E~~v~~~~v~i--~GEitt~a~vd~~---~ivR~~i~~IGY~~~~~g--fd~~t~~v~~~i~~QS~dIa~gV~~~ 116 (399)
..+-|++-.++|.++- -..-..+..+|.+ +++++-|+++||.+-..- -.++...+++.+..|. ||.--
T Consensus 262 ~~~~~~vsk~GG~~i~~l~~R~v~~~~is~~eA~~kA~~fL~~~G~~nm~~ty~~~~d~~~~~~yv~~~~-----gV~iY 336 (435)
T TIGR02889 262 ARIYMNVSKKGGHPLWFLDNRPVSKPKISLNEAVNKAKKFLEKIGFKDMEPTESDKYDNVGVISYVYVQN-----DVRVY 336 (435)
T ss_pred ceEEEEEEcCCCEEEEEEcCCCCCCCCcCHHHHHHHHHHHHHHcCcccceehhhhccCCEEEEEEEEeeC-----CEEEc
Confidence 4588999999997763 2222234567765 579999999999764321 1223445566666664 44310
Q ss_pred CCCCCCCC-CCCcceeeEee-----ecCCCCCCCCch
Q 015873 117 FTKRPEDI-GAGDQGHMFGY-----ATDETSEFMPLS 147 (399)
Q Consensus 117 ~~~~~~~~-GAGDQGimfGY-----A~~ET~~~MPl~ 147 (399)
.+.-.+ -|-|.|=+.|| -+++++.=+|-|
T Consensus 337 --pd~IkVkVALDnGeIiGf~a~~Yl~~h~~R~ip~p 371 (435)
T TIGR02889 337 --PDQIKVKVALDDGDVVGFDARQYLTSHRKRTLPKP 371 (435)
T ss_pred --CCeEEEEEEccCCeEEEEecccchhhcccccCCCC
Confidence 010112 38899999999 778876656766
No 30
>PRK14053 methyltransferase; Provisional
Probab=25.34 E-value=87 Score=30.26 Aligned_cols=42 Identities=24% Similarity=0.379 Sum_probs=33.7
Q ss_pred hcCCCCeEEEEEEeeeCe----EEEEEEeeeeeeccHHHHHHHHHHh
Q 015873 39 EQDPESKVACETCTKTNM----VMVFGEITTKAKVDYEKIVRDTCRS 81 (399)
Q Consensus 39 ~~Dp~arVA~E~~v~~~~----v~i~GEitt~a~vd~~~ivR~~i~~ 81 (399)
--||+|+||+=||.++-. .-|.|-..|. ++=+++++++++.+
T Consensus 17 vG~~~S~VAVvTL~S~~~~~~gaAI~G~c~TE-NlGIEKvI~NvisN 62 (194)
T PRK14053 17 VGNPESRIAVVTLASSIESFPEAAIWGSSKTE-NLGVEKIIVNVISN 62 (194)
T ss_pred eCCCCCcEEEEEccccccccCCceEEeecccc-ccCHHHHHHHhhcC
Confidence 348999999999998754 5567776665 78899999999765
No 31
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=25.25 E-value=56 Score=31.67 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=16.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHH
Q 015873 140 TSEFMPLSHVLATKLGARLTEV 161 (399)
Q Consensus 140 T~~~MPl~i~lAh~L~~rl~~~ 161 (399)
.+--+|.|+.+||+|++|..+.
T Consensus 279 ~~~~lP~p~~yA~~~a~~~~~~ 300 (302)
T PF02171_consen 279 GPISLPAPLYYAHKLAKRGRNN 300 (302)
T ss_dssp S--SS-HHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHhh
Confidence 4566999999999999998653
No 32
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=25.24 E-value=60 Score=26.35 Aligned_cols=32 Identities=31% Similarity=0.561 Sum_probs=21.5
Q ss_pred CCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHcCCCC
Q 015873 122 EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 168 (399)
Q Consensus 122 ~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~~~~~ 168 (399)
.+||.|||| |+|-+|..|-| .|.++..+..+|
T Consensus 13 a~IgSGd~g------------YiP~Ai~calk---~Ln~iAad~~Lp 44 (66)
T PF06786_consen 13 AQIGSGDQG------------YIPDAIGCALK---TLNDIAADEALP 44 (66)
T ss_pred HHhcCCccc------------cCcHHHHHHHH---HHHHHHcccccC
Confidence 469999998 58999988755 444444444343
No 33
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=25.12 E-value=3.4e+02 Score=25.24 Aligned_cols=81 Identities=19% Similarity=0.308 Sum_probs=56.8
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEEcCCCCeEEccCCCCcCCCCceEEEecCCC
Q 015873 192 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 267 (399)
Q Consensus 192 ~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 267 (399)
++|.+||-|..=.-.+++++|...+..---+| -+|. .+-+++...+|=.+|++++=|
T Consensus 2 ~~i~NvVas~~l~~~idL~~la~~~~n~~YePe~fpgli~R~~~P~~t~lIf~sGKivitG------------------- 62 (174)
T cd00652 2 PKIQNIVATVNLGCELDLRKIALAARNAEYNPKRFPGVIMRLREPKTTALIFSSGKMVITG------------------- 62 (174)
T ss_pred cEEEEEEEEEEcCCccCHHHHHhhCCCcEECCCccceEEEEcCCCcEEEEEECCCEEEEEe-------------------
Confidence 47899999998888999999977654422233 2332 123467788999999999755
Q ss_pred ccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccc
Q 015873 268 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLA 305 (399)
Q Consensus 268 ~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla 305 (399)
.|=-..+.-+++++++-|-..|.-
T Consensus 63 --------------aks~~~~~~a~~~~~~~L~~~g~~ 86 (174)
T cd00652 63 --------------AKSEEDAKLAARKYARILQKLGFP 86 (174)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCCC
Confidence 222356777788999988777744
No 34
>PLN00062 TATA-box-binding protein; Provisional
Probab=24.77 E-value=2.4e+02 Score=26.54 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=56.6
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEEcCCCCeEEccCCCCcCCCCceEEEecCCC
Q 015873 192 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 267 (399)
Q Consensus 192 ~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 267 (399)
++|.+||-|+.=.-.+++++|...+..---+| .+|. .+-+++..++|=.||++++=|
T Consensus 2 ~~I~NvVas~~l~~~idL~~la~~~~n~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTG------------------- 62 (179)
T PLN00062 2 PTLQNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTG------------------- 62 (179)
T ss_pred cEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccCcEEEEEeCCCcEEEEEECCCeEEEEe-------------------
Confidence 47889999999888999999976554322233 2332 123567889999999999765
Q ss_pred ccccccccCcCCCCCccchhhhHHHHHHHHHHHhhcc
Q 015873 268 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 304 (399)
Q Consensus 268 ~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 304 (399)
.|--..+..+++.++|-|-..|.
T Consensus 63 --------------aks~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 63 --------------AKSEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCC
Confidence 22335667778888888877775
No 35
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=24.07 E-value=2.5e+02 Score=26.30 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=56.8
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEEcCCCCeEEccCCCCcCCCCceEEEecCCC
Q 015873 192 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 267 (399)
Q Consensus 192 ~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 267 (399)
.+|.+||-|+.=.-.+++++|...+..---+| .+|. .+-+++...+|=.||++++=|
T Consensus 2 ~~I~NvVas~~l~~~idL~~la~~~~n~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTG------------------- 62 (174)
T cd04516 2 PKIQNIVATVNLGCKLDLKKIALRARNAEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTG------------------- 62 (174)
T ss_pred CEEEEEEEEEEcCCeecHHHHHhhCCCCEECCccCcEEEEEeCCCcEEEEEECCCeEEEEe-------------------
Confidence 46889999998888999999987654422222 2332 123467788999999999755
Q ss_pred ccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccc
Q 015873 268 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLA 305 (399)
Q Consensus 268 ~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla 305 (399)
.|--.++..+++.+++-|-..|..
T Consensus 63 --------------aks~e~a~~a~~~i~~~L~~~g~~ 86 (174)
T cd04516 63 --------------AKSEDDSKLAARKYARIIQKLGFP 86 (174)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCCC
Confidence 222356777889999988777743
No 36
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=24.05 E-value=1.3e+02 Score=30.99 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=16.0
Q ss_pred eeEeeecCCCCCCC-CchHHHH
Q 015873 131 HMFGYATDETSEFM-PLSHVLA 151 (399)
Q Consensus 131 imfGYA~~ET~~~M-Pl~i~lA 151 (399)
|++||+|.+++-|- |-+-++.
T Consensus 4 ~v~~~~~~h~~~l~~~~~~w~~ 25 (335)
T PRK13363 4 IVLGMGTSHGPMLVTPPEDWLH 25 (335)
T ss_pred eEeecccCCCcccccChHHHhh
Confidence 79999999999776 5544443
No 37
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=23.45 E-value=85 Score=31.00 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=33.1
Q ss_pred hcCCCCeEEEEEEeeeCe--------EEEEEEeeeeeeccHHHHHHHHHHh
Q 015873 39 EQDPESKVACETCTKTNM--------VMVFGEITTKAKVDYEKIVRDTCRS 81 (399)
Q Consensus 39 ~~Dp~arVA~E~~v~~~~--------v~i~GEitt~a~vd~~~ivR~~i~~ 81 (399)
--||+|.||+=||.++.. .-|+|-..|. ++=++++++++|.+
T Consensus 20 vGd~~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TE-NlGIEKvI~NvisN 69 (225)
T PRK00964 20 VGDPESPVAVVTLGSHLLDQPIIDAGAAISGPCHTE-NLGIEKVIANVISN 69 (225)
T ss_pred eCCCCCceEEEEccccccccchhhcCceeecccccc-cccHHHHHHHHhcC
Confidence 359999999999998765 3456666565 77899999999765
No 38
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=22.72 E-value=89 Score=30.74 Aligned_cols=36 Identities=33% Similarity=0.588 Sum_probs=30.9
Q ss_pred EEEEEeccccceeEEEEecCCCCCChHHHHHHHHHhC
Q 015873 311 QVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESF 347 (399)
Q Consensus 311 QlsYAIGva~Pvsi~V~tfgt~~~~~~~i~~~v~~~F 347 (399)
|--|+||. -|+++..-++|++|++-.+|.+-++..+
T Consensus 197 ~~~y~IgE-vPitFvdR~~GeSKLg~~eIv~ylk~l~ 232 (238)
T KOG2978|consen 197 QHGYTIGE-VPITFVDRTYGESKLGGKEIVQYLKGLL 232 (238)
T ss_pred ccCceEee-cceEEEeeccccccccHHHHHHHHHHHh
Confidence 45699996 5999999999999999999998887654
No 39
>PRK11023 outer membrane lipoprotein; Provisional
Probab=22.55 E-value=1.3e+02 Score=28.16 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=29.4
Q ss_pred hhhhh-hHHHHHHHHhhcCCCCe--EEEEEEeeeCeEEEEEEeeee
Q 015873 24 KLCDQ-ISDAVLDACLEQDPESK--VACETCTKTNMVMVFGEITTK 66 (399)
Q Consensus 24 KicDq-ISDaILDa~L~~Dp~ar--VA~E~~v~~~~v~i~GEitt~ 66 (399)
++-|+ |+-.|..+ |.+||.-+ -.+.+-+.+|.|.+.|++.+.
T Consensus 44 ~~dD~~i~~~V~~a-L~~~~~l~~~~~I~V~v~~G~V~L~G~V~~~ 88 (191)
T PRK11023 44 QVDDGTLELRVNNA-LSKDEQIKKEARINVTAYQGKVLLTGQSPNA 88 (191)
T ss_pred eehhHHHHHHHHHH-HhhCcccCcCceEEEEEECCEEEEEEEeCCH
Confidence 44444 44444444 45577554 468888999999999999885
No 40
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=22.21 E-value=1.4e+02 Score=27.88 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=43.2
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCC---CCCCCCcEEEEcCCCCeEEcc
Q 015873 192 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE---KYLDEKTIFHLNPSGRFVIGG 248 (399)
Q Consensus 192 ~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~---~~~~~~t~~~INPtG~FviGG 248 (399)
++|.+||-|.+=...++++++...+..-.-+|-+|. .+-+++...+|=.||++++=|
T Consensus 3 ~~i~Nvvas~~l~~~idL~~la~~l~n~eYeP~fpgli~R~~~Pk~t~lIF~sGKiviTG 62 (174)
T cd04517 3 ILIVNVVCQFSLRCHIDLRKLALAGRNVEYNPRYPKVTMRLREPRATASVWSSGKITITG 62 (174)
T ss_pred cEEEEEEEEEEcCCcccHHHHHhhCCCCEEeCCCCEEEEEecCCcEEEEEECCCeEEEEc
Confidence 578999999998889999999776655444554443 223467788999999999766
No 41
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=22.07 E-value=73 Score=32.62 Aligned_cols=85 Identities=20% Similarity=0.345 Sum_probs=56.3
Q ss_pred ChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCCCCCCCCceEEEEe
Q 015873 22 PDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVN 101 (399)
Q Consensus 22 PDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~t~~v~~~ 101 (399)
-|++.|-+.+.||-+++.+..-..|.. +.-+|.++-.++.|..--+++-.-||.+|++.||+-+--- .++-.+..
T Consensus 110 tdd~~~~~~~til~ay~~~~~~d~v~~--v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T--~dsw~~~~- 184 (305)
T COG5309 110 TDDIHDAVEKTILSAYLPYNGWDDVTT--VTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTT--VDSWNVVI- 184 (305)
T ss_pred ccchhhhHHHHHHHHHhccCCCCceEE--EEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceee--cccceeee-
Confidence 478889999999999999877665542 2223445556667766556777779999999999876211 11222222
Q ss_pred ecCCChhhhcccC
Q 015873 102 IEQQSPDIAQGVH 114 (399)
Q Consensus 102 i~~QS~dIa~gV~ 114 (399)
. .||+.+..|
T Consensus 185 --~-np~l~~~SD 194 (305)
T COG5309 185 --N-NPELCQASD 194 (305)
T ss_pred --C-ChHHhhhhh
Confidence 2 788887665
No 42
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=21.22 E-value=1.3e+02 Score=28.98 Aligned_cols=57 Identities=23% Similarity=0.369 Sum_probs=41.9
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEEcCCCCeEEcc
Q 015873 192 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGG 248 (399)
Q Consensus 192 ~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~-v~~~---~~~~~~t~~~INPtG~FviGG 248 (399)
++|.+||-|+.-..+++++++...+..---.| -+|. .+-++++.++|=-||+.|+=|
T Consensus 8 i~IeNIVAS~~L~~elDL~~~~~~l~~aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTG 68 (185)
T COG2101 8 ITIENIVASVDLGQELDLEEVALDLPGAEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTG 68 (185)
T ss_pred cEEEEEEEEechhhhccHHHHHhhCCCCccCHhHCCeeEEEecCCcceEEEEecCcEEEec
Confidence 78999999999999999998877665432222 2332 123477899999999999644
No 43
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=21.12 E-value=1.7e+02 Score=27.42 Aligned_cols=58 Identities=28% Similarity=0.453 Sum_probs=41.5
Q ss_pred eeEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEEcCCCCeEEcc
Q 015873 191 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGG 248 (399)
Q Consensus 191 p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~-v~~~---~~~~~~t~~~INPtG~FviGG 248 (399)
..+|++||-|+.=.-.++++.+......---+| .+|. .+-+++..++|=+||++++=|
T Consensus 92 ~~~i~NIVas~~l~~~i~L~~la~~~~~~~YePe~fpglvyR~~~pk~~~lIF~SGKvvitG 153 (174)
T cd04518 92 EIKVQNIVASADLGREVNLDAIAIGLPNAEYEPEQFPGLVYRLDEPKVVLLLFSSGKMVITG 153 (174)
T ss_pred ceEEEEEEEEEEcCCccCHHHHHhhCCCCccCcccCceEEEEecCCcEEEEEeCCCEEEEEe
Confidence 478999999998888999999976554222222 2332 223467899999999999766
No 44
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=20.16 E-value=1.4e+02 Score=30.05 Aligned_cols=55 Identities=9% Similarity=0.071 Sum_probs=31.7
Q ss_pred CCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeEEEEecCC-CCCC-hHHHHHHHHHhC
Q 015873 281 PTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGT-GKIP-DKEILKIVKESF 347 (399)
Q Consensus 281 ptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi~V~tfgt-~~~~-~~~i~~~v~~~F 347 (399)
.+.|-|.--+++-.|++.+..+|+..- ...|+|.. ||+- -.++ -+.|.+++++-|
T Consensus 72 ~~~~~~am~~L~~~V~~~l~~~Gv~av----------~~~P~s~~--~~~gr~~~~~l~~i~~~l~~gf 128 (252)
T COG1608 72 FSLTHLAMLELNSIVVDALLDAGVRAV----------SVVPISFS--TFNGRILYTYLEAIKDALEKGF 128 (252)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccc----------cccCccee--ecCCceeechHHHHHHHHHcCC
Confidence 345555566777788888888876421 13677776 4332 2234 456666665543
Done!