Query 015873
Match_columns 399
No_of_seqs 167 out of 1141
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 04:00:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3so4_A Methionine-adenosyltran 100.0 3E-193 9E-198 1428.1 35.4 386 5-395 18-403 (415)
2 3iml_A S-adenosylmethionine sy 100.0 6E-192 2E-196 1414.7 35.0 381 8-396 7-387 (399)
3 3s82_A S-adenosylmethionine sy 100.0 8E-192 3E-196 1418.1 29.5 382 8-396 8-404 (407)
4 2p02_A S-adenosylmethionine sy 100.0 9E-190 3E-194 1399.9 34.2 380 8-394 17-396 (396)
5 1p7l_A S-adenosylmethionine sy 100.0 1E-189 4E-194 1394.2 31.8 376 9-396 2-377 (383)
6 4hpv_A S-adenosylmethionine sy 98.3 5.6E-06 1.9E-10 83.8 13.7 302 17-347 28-389 (407)
7 1mp9_A Tata-binding protein; t 56.3 49 0.0017 30.3 8.8 80 192-304 13-96 (198)
8 1ais_A TBP, protein (tata-bind 49.2 43 0.0015 30.2 7.2 81 191-304 8-92 (182)
9 2z8u_A Tata-box-binding protei 44.3 42 0.0014 30.5 6.3 80 192-304 13-96 (188)
10 2gjh_A Designed protein; oblig 39.0 26 0.00088 26.4 3.3 38 70-107 18-55 (62)
11 3kxy_T EXSE; type-three secret 29.6 34 0.0011 26.0 2.6 21 275-299 17-37 (66)
12 1ytb_A Protein (tata binding p 28.5 1.7E+02 0.0057 26.3 7.5 81 191-304 4-88 (180)
13 2w42_A PIWI, putative uncharac 26.8 43 0.0015 33.6 3.7 25 142-166 385-409 (427)
14 1qys_A TOP7; alpha-beta, novel 26.0 27 0.00094 28.5 1.7 38 70-107 62-99 (106)
15 3pvv_A Chromosomal replication 25.0 49 0.0017 27.1 3.1 28 330-357 1-28 (101)
No 1
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica}
Probab=100.00 E-value=2.5e-193 Score=1428.13 Aligned_cols=386 Identities=60% Similarity=0.989 Sum_probs=365.9
Q ss_pred ccccceeEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCC
Q 015873 5 DKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGF 84 (399)
Q Consensus 5 ~~~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY 84 (399)
-+|++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||
T Consensus 18 ~~~~~~lFTSESVseGHPDKicDqISDAILDa~L~qDp~arVAcEt~vttg~V~v~GEItt~a~vD~~~ivR~~ik~IGY 97 (415)
T 3so4_A 18 GPGSRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGY 97 (415)
T ss_dssp ----CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTC
T ss_pred hcccceeEeeccccCCCChHHHhhHhHHHHHHHHhcCCCCcEEEEEEeecCeEEEEEEEecccccCHHHHHHHHHhccCC
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHc
Q 015873 85 VSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKN 164 (399)
Q Consensus 85 ~~~~~gfd~~t~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~ 164 (399)
+++++|||++||+|+++|++|||||+|||+.+ +..+++||||||||||||||||||||||||+|||+|++||+++||+
T Consensus 98 ~~~~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~--~~~~~~GAGDQGiMFGYAtdET~elMPlpi~lAH~L~~rla~~Rk~ 175 (415)
T 3so4_A 98 DDTNKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREK 175 (415)
T ss_dssp EEGGGTEETTTCEEEEEEEEECCC-------------CCCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCccCCceEEEEecccCChhhhhccccc--cchhhcCCCcceeEEEEecCCCcccCCcHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999963 2235799999999999999999999999999999999999999999
Q ss_pred CCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEEcCCCCe
Q 015873 165 STCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 244 (399)
Q Consensus 165 ~~~~~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~F 244 (399)
|++||||||+||||||+|++++|.++|+||+||||||||++++++++|+++|+|+||++|+|++|++++|+|||||||||
T Consensus 176 g~l~~LrPD~KtQVTveY~~~~g~~~P~rv~tvViStQH~~~v~~~~l~~~i~e~VI~~vip~~~ld~~t~~~INPtGrF 255 (415)
T 3so4_A 176 GILPWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRF 255 (415)
T ss_dssp SSSTTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTHHHHSCTTTCCSSCEEEESTTCCC
T ss_pred CCCCeeccCcceEEEEEEEcCCCCceeeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCeEEEECCCCCe
Confidence 99999999999999999987667789999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeE
Q 015873 245 VIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSV 324 (399)
Q Consensus 245 viGGP~~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi 324 (399)
|||||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||
T Consensus 256 ViGGP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~PvSi 335 (415)
T 3so4_A 256 VIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYAIGVSHPLSI 335 (415)
T ss_dssp CSCTTTTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECTTCSSCSEE
T ss_pred EECCCcccccccCceEEEEccCCcccCCCccccCCCccccccchhHHHHHHHHHHHHcCCcCeEEEEEEEeeccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCCCCCCCcccccccccc
Q 015873 325 FVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 395 (399)
Q Consensus 325 ~V~tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~ 395 (399)
+||||||+++++++|.++|+++|||||++||++|+|+|| ||++||+||||||++++||||++|+|++-
T Consensus 336 ~V~TfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~l~~~ 403 (415)
T 3so4_A 336 NVNTYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRP---IFQKTAVGGHFGRNDPDFKWEFPKELEIP 403 (415)
T ss_dssp EEEECSCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CCTGGGSSCSSSCCCTTCTTSSCCCCCCC
T ss_pred EEEeCCCCcCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcccccCCCCCCCCCCcCCcccCCC
Confidence 999999999999999999999999999999999999999 99999999999999989999999999864
No 2
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=100.00 E-value=6e-192 Score=1414.69 Aligned_cols=381 Identities=54% Similarity=0.883 Sum_probs=354.4
Q ss_pred cceeEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 015873 8 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 87 (399)
Q Consensus 8 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 87 (399)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++
T Consensus 7 ~~~lFTSESVseGHPDKicDqISDaILDa~L~~Dp~arVAcEt~~~tg~V~v~GEItt~a~vd~~~ivR~~i~~IGY~~~ 86 (399)
T 3iml_A 7 NDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNT 86 (399)
T ss_dssp CEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCC--
T ss_pred cCceEeccccCCCCCcHHHHHHhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHcCCC
Q 015873 88 DVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTC 167 (399)
Q Consensus 88 ~~gfd~~t~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~~~~ 167 (399)
++|||++||+|+++|++|||||+|||+.+. ...+++||||||||||||||||||||||||+|||+|++||+++||+|++
T Consensus 87 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~-~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~rl~~~Rk~g~l 165 (399)
T 3iml_A 87 DYGIDYRGCAVLVAYDKQSPDIAQGVDRAH-DNNLDQGAGDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRL 165 (399)
T ss_dssp -------CCEEEEEEEEECC-------------CTTCCBSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred ccCccCCceEEEEecccCChhHhhhhcccc-cchhhcCcCcceeEEEEecCCccccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999521 1235799999999999999999999999999999999999999999999
Q ss_pred CcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEEcCCCCeEEc
Q 015873 168 SWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG 247 (399)
Q Consensus 168 ~~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviG 247 (399)
||||||+||||||+|++ | +|+||+|||||+||++++++++|+++|+|+||+|++|++|++++|+||||||||||||
T Consensus 166 ~~LrPD~KtQVTveY~~--~--~P~rv~tvViStQH~~~v~~~~l~~~i~e~vi~~vip~~~l~~~t~~~INPtGrFViG 241 (399)
T 3iml_A 166 PWLRPDAKSQVTVRYVD--G--KPHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIG 241 (399)
T ss_dssp TTEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTCCCCSC
T ss_pred CeecCCCceEEEEEEEC--C--ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCeEeC
Confidence 99999999999999974 5 8999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeEEEE
Q 015873 248 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVD 327 (399)
Q Consensus 248 GP~~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi~V~ 327 (399)
||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||
T Consensus 242 GP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~P~Si~V~ 321 (399)
T 3iml_A 242 GPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVN 321 (399)
T ss_dssp GGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCSSCSEEEEE
T ss_pred CCcccccccccceeeecCCcccCCCCccccCCCccccchHHHHHHHHHHHHHHhhcccceeEEEEEEecCcccceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCCCCCCCccccccccccC
Q 015873 328 SYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 396 (399)
Q Consensus 328 tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~ 396 (399)
||||+++++++|.++|+++|||||++||++|+|++| ||++||+||||||++++||||++|+++.|+
T Consensus 322 tfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~v~~lk 387 (399)
T 3iml_A 322 TFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRP---IYEKTAAYGHFGREEPEFSWEAADKALALA 387 (399)
T ss_dssp CTTCCSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSS---CCGGGGSSCSSSCCCTTCGGGCCTTHHHHH
T ss_pred eCCCcccCHHHHHHHHHHHcCCCHHHHHHHcCCCCC---chhhhcCcCCCCCCCCCCCccCccHHHHHH
Confidence 999999999999999999999999999999999999 999999999999999899999999998874
No 3
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=100.00 E-value=8e-192 Score=1418.13 Aligned_cols=382 Identities=54% Similarity=0.863 Sum_probs=357.2
Q ss_pred cceeEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeee---eeccHHHHHHHHHHhhCC
Q 015873 8 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK---AKVDYEKIVRDTCRSIGF 84 (399)
Q Consensus 8 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~---a~vd~~~ivR~~i~~IGY 84 (399)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+ ++||+++|||++|++|||
T Consensus 8 ~~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~vttg~V~v~GEItt~~~~a~vd~~~ivR~~i~~IGY 87 (407)
T 3s82_A 8 KGRLFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGY 87 (407)
T ss_dssp -CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCHHHHHTHHHHHHHHHHHHTC
T ss_pred CceEEeeccccCCCCcHHHhhhhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEeeCCcccccCHHHHHHHHHHhcCC
Confidence 46999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCCCCCCCCceEEEEeecCCChhhhcccCCCCC-------CCCCCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHH
Q 015873 85 VSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFT-------KRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGAR 157 (399)
Q Consensus 85 ~~~~~gfd~~t~~v~~~i~~QS~dIa~gV~~~~~-------~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~r 157 (399)
+++++|||++||+|+++|++|||||+|||+.+.+ +..+++||||||||||||||||||||||||+|||+|++|
T Consensus 88 ~~~~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~e~r~~~~~~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~r 167 (407)
T 3s82_A 88 DSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAINDTPERMPLPIALAHRLSRR 167 (407)
T ss_dssp EEGGGTEETTTSEEEEEEEEECC--------------------------CCCEEEEEEEETTSTTSSCHHHHHHHHHHHH
T ss_pred CCcccCcCCCceEEEEecccCChHHHhhhcchhhcccccccchhhhcCCccceeEEEEecCCCcccCchHHHHHHHHHHH
Confidence 9999999999999999999999999999996421 112579999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHH-HHHHHHHhhcccccCC----CCCCC
Q 015873 158 LTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKPVIPE----KYLDE 232 (399)
Q Consensus 158 l~~~Rk~~~~~~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~-l~~~i~e~Vi~~v~~~----~~~~~ 232 (399)
|+++||+|++||||||+||||||+|++ | +|+||+||||||||++++++++ |+++|+|+||++|+|+ +|+++
T Consensus 168 la~~Rk~g~l~~LrPD~KtQVTveY~~--~--~P~rv~tvViStQH~~~v~~~~~l~~~i~e~VI~~vip~~~~~~~~~~ 243 (407)
T 3s82_A 168 LTEVRKNGVLPYLRPDGKTQVTIEFED--D--VPVRLDTVVISTQHAADIDLENTLTPDIREKVLNTVLNDLAHDTLDTS 243 (407)
T ss_dssp HHHHHHTSSSTTEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTCCTTTTHHHHHHHHTHHHHHHHHCCSSCBCT
T ss_pred HHHHHHcCCCCeecCCCceEEEEEEEC--C--ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 999999999999999999999999974 6 8999999999999999999999 9999999999999998 89999
Q ss_pred CcEEEEcCCCCeEEccCCCCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEE
Q 015873 233 KTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQV 312 (399)
Q Consensus 233 ~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQl 312 (399)
+|+||||||||||||||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+||||||
T Consensus 244 ~t~~~INPtGrFViGGP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQl 323 (407)
T 3s82_A 244 STRLLVNPTGKFVVGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERVEVQV 323 (407)
T ss_dssp TCEEEESTTCCCCSCTTTTSEEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEE
T ss_pred CeEEEECCCCCeEECCCcccccccCceEEEecCCCcccCCCccccCCCccccchhHHHHHHHHHHHHHHcccccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccceeEEEEecCCCCCChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCCCCCCCccccccc
Q 015873 313 SYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPL 392 (399)
Q Consensus 313 sYAIGva~Pvsi~V~tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~ 392 (399)
|||||+++|+||+||||||+++++++|.++|+++|||||++||++|+|+|| ||++||+||||||++++||||+||++
T Consensus 324 sYAIGva~PvSi~V~tfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~dkv 400 (407)
T 3s82_A 324 AYAIGKAAPVGLFIETFGTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLRP---IYAQTAAYGHFGRTDVELPWEQLNKV 400 (407)
T ss_dssp EECTTCSSCSEEEEECTTCCSSCHHHHHHHHHHHSCCSHHHHHHHTTCSSS---CCGGGSSSCSSSCSSSCCGGGCCTTH
T ss_pred EEecccccceEEEEEeCCCCCCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcCcCCCCCCCCCCCccCCcHH
Confidence 999999999999999999999999999999999999999999999999999 99999999999999889999999999
Q ss_pred cccC
Q 015873 393 KWEK 396 (399)
Q Consensus 393 ~~~~ 396 (399)
+.|+
T Consensus 401 ~~Lk 404 (407)
T 3s82_A 401 DDLK 404 (407)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 4
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A*
Probab=100.00 E-value=8.5e-190 Score=1399.85 Aligned_cols=380 Identities=66% Similarity=1.084 Sum_probs=368.9
Q ss_pred cceeEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 015873 8 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 87 (399)
Q Consensus 8 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 87 (399)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+|+||+++|||++|++|||+++
T Consensus 17 ~~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~ 96 (396)
T 2p02_A 17 GTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDS 96 (396)
T ss_dssp CEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEG
T ss_pred cceEEeeccccCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcccccCCHHHHHHHHHHHhCCCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHcCCC
Q 015873 88 DVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTC 167 (399)
Q Consensus 88 ~~gfd~~t~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~~~~ 167 (399)
++|||++||+|+++|++|||||+|||+.. +..+++||||||||||||||||||||||||+|||+|++||+++||+|++
T Consensus 97 ~~gfd~~tc~Vl~~i~~QSpDIaqGV~~~--~~~~e~GAGDQGiMFGYAt~ET~elMPlpi~lAh~L~~rla~~Rk~g~l 174 (396)
T 2p02_A 97 SKGFDYKTCNVLVALEQQSPDIAQGVHLD--RNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTL 174 (396)
T ss_dssp GGTEETTTSEEEEEEECCCHHHHHHHTTT--CCGGGCCBSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred ccCCCCCceEEEEecccCChhhhhccccc--ccccccCCCCcceEEEEeCCCCcccCChHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999953 1113699999999999999999999999999999999999999999999
Q ss_pred CcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEEcCCCCeEEc
Q 015873 168 SWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG 247 (399)
Q Consensus 168 ~~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviG 247 (399)
|||||||||||||+|++++|.++|+||+|||||+||++++++++||++|+|+||++|+|++|++++|+||||||||||||
T Consensus 175 ~~lrPD~KtQVTveY~~~~~~~~P~rv~tvviS~QH~~~v~~~~lr~~i~e~vi~~v~p~~~ld~~t~~~INPtGrFviG 254 (396)
T 2p02_A 175 PWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIG 254 (396)
T ss_dssp TTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECSSCCHHHHHHHHHHTTHHHHSCGGGCCTTCEEEESTTSCCCSC
T ss_pred CccCCCcceEEEEEEEcCCCCcCceEEeEEEEeecCCCCCCHHHHHHHHHHHHHHHhcChhhcCCCeEEEECCCCCcccC
Confidence 99999999999999985446678999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeEEEE
Q 015873 248 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVD 327 (399)
Q Consensus 248 GP~~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi~V~ 327 (399)
||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||
T Consensus 255 GP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVaAGLA~rc~VQlsYAIGva~PvSi~Vd 334 (396)
T 2p02_A 255 GPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIF 334 (396)
T ss_dssp GGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSEEEEE
T ss_pred CCcccccccCceEEEEcCCCccCCCCcccCCCCccccchhhHHHHHHHHHHHHhhccCCeeEEEEEeecCcccccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCCCCCCCccccccccc
Q 015873 328 SYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 394 (399)
Q Consensus 328 tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~ 394 (399)
||||+++++++|.++|+++|||||++||++|+|+|| ||++||+||||||+ +||||++|+++.
T Consensus 335 tfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGr~--~fpWE~~d~~~~ 396 (396)
T 2p02_A 335 HYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKP---IYQRTAAYGHFGRD--SFPWEVPKKLKY 396 (396)
T ss_dssp CTTCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CGGGGSSSCSSSST--TCGGGSCCCCCC
T ss_pred ecCCCCCCHHHHHHHHHHHcCCCHHHHHHhcCCCCC---cchhhccccCcCCC--CCCcccccccCC
Confidence 999999999999999999999999999999999999 99999999999997 699999999863
No 5
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=100.00 E-value=1.2e-189 Score=1394.22 Aligned_cols=376 Identities=57% Similarity=0.919 Sum_probs=367.8
Q ss_pred ceeEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCC
Q 015873 9 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDD 88 (399)
Q Consensus 9 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 88 (399)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||++++||++|++|||++++
T Consensus 2 ~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 81 (383)
T 1p7l_A 2 KHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSD 81 (383)
T ss_dssp CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGG
T ss_pred CceeeccccCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCcEEEEEEEeccccCCHHHHHHHHHHHhCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHcCCCC
Q 015873 89 VGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 168 (399)
Q Consensus 89 ~gfd~~t~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~~~~~ 168 (399)
+|||++||+|+++|++|||||+|||+... .+++||||||||||||||||||||||||+|||+|++||+++||+|++|
T Consensus 82 ~gfd~~tc~v~~~i~~QSpdIa~GV~~~~---~~e~GAGDQGiMFGYA~~ET~e~MPlpi~lAh~L~~rl~~~Rk~g~~~ 158 (383)
T 1p7l_A 82 MGFDANSCAVLSAIGKQSPDINQGVDRAD---PLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLP 158 (383)
T ss_dssp GTEETTTSEEEEEEECCCHHHHHHHSCSS---TTTCCCSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSST
T ss_pred cCcCCCceEEEEecccCChHHhhhcCccc---ccccccCCCceeeEEecCCCcccCchHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999531 236999999999999999999999999999999999999999999999
Q ss_pred cccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEEcCCCCeEEcc
Q 015873 169 WLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 248 (399)
Q Consensus 169 ~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGG 248 (399)
||||||||||||+|++ | +|+||+|||||+||++++++++||++|+|+||++|+|++|++++|+|||||||||||||
T Consensus 159 ~lrPD~KtQVtveY~~--~--~P~rv~tvviS~QH~~~v~~~~l~~~i~e~vi~~v~p~~~ld~~t~~~iNPtGrFviGG 234 (383)
T 1p7l_A 159 WLRPDAKSQVTFQYDD--G--KIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGG 234 (383)
T ss_dssp TEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTSCCCSCH
T ss_pred ccCCCccceEEEEEeC--C--ceeEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCccccCCCeEEEECCCCCcccCC
Confidence 9999999999999984 5 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeEEEEe
Q 015873 249 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDS 328 (399)
Q Consensus 249 P~~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi~V~t 328 (399)
|+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+|||
T Consensus 235 P~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVaAGLA~rc~VQlsYAIGva~PvSi~Vdt 314 (383)
T 1p7l_A 235 PMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVET 314 (383)
T ss_dssp HHHSCEETTCCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEECTTCCSCSEEEEEC
T ss_pred ccccccccCceEEEEccCCccCCCCcccCCCCCcccchhhhHHHHHHHHHHhhhccccceeeeeeeecccccccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCCCCCCCccccccccccC
Q 015873 329 YGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 396 (399)
Q Consensus 329 fgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~ 396 (399)
|||+++++++|.++|+++|||||++||++|+|+|| ||++||+||||||+ +||||++|+++.|+
T Consensus 315 fGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGr~--~fpWE~~d~~~~lk 377 (383)
T 1p7l_A 315 FGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHP---IYKETAAYGHFGRE--HFPWEKTDKAQLLR 377 (383)
T ss_dssp TTCBSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSS---CCGGGGSSCSSSCT--TSTTTCCSHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHhcCCCCC---chhhhccccCcCCC--CCCccccchHHHHH
Confidence 99999999999999999999999999999999999 99999999999997 69999999998875
No 6
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=98.32 E-value=5.6e-06 Score=83.79 Aligned_cols=302 Identities=22% Similarity=0.263 Sum_probs=173.9
Q ss_pred cCCCCChhhhhhhHHHHHHHH----hhc---------CCCCeEEEEEEe--------eeCeEEEEEEeeeee---e----
Q 015873 17 VNEGHPDKLCDQISDAVLDAC----LEQ---------DPESKVACETCT--------KTNMVMVFGEITTKA---K---- 68 (399)
Q Consensus 17 V~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v--------~~~~v~i~GEitt~a---~---- 68 (399)
=+-||||-|||-|++++=-++ |+. |+---||-+..- ..=.|+++|..|+.. .
T Consensus 28 KGiGHPDsIcDgiaE~vS~aLs~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAT~~~~g~~~~~~ 107 (407)
T 4hpv_A 28 KGLGHPDYIADAVAEEASRKLSLYYLKKYGVILHHNLDKTLVVGGQATPRFKGGDIIQPIYIIVAGRATTEVKTESGIDQ 107 (407)
T ss_dssp ECTTSHHHHHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECCEEEEETTEEEEEECEEEEEEEEECCEEECSSCEEE
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEeeccCCCceeeeeEEEEEecceEEEECCcccccc
Confidence 367999999999999875443 222 443344444332 223478888887652 2
Q ss_pred ccHHHHH----HHHHHh-hCCCCCCCCCCCCc-eEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCC
Q 015873 69 VDYEKIV----RDTCRS-IGFVSDDVGLDADH-CKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSE 142 (399)
Q Consensus 69 vd~~~iv----R~~i~~-IGY~~~~~gfd~~t-~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~ 142 (399)
+.+.+|+ |+.|++ +-+ +|.++ ..|...|.+-|+|+..-.... ..--.|-|.....|||
T Consensus 108 iPv~~Ia~~AAk~~l~~~l~~------lD~e~~v~i~~~i~~GS~dL~~vf~r~----~~vp~ANDTS~gVGyA------ 171 (407)
T 4hpv_A 108 IPVGTIIIESVKEWIRNNFRY------LDAERHVIVDYKIGKGSSDLVGIFEAS----KRVPLSNDTSFGVGFA------ 171 (407)
T ss_dssp CCHHHHHHHHHHHHHHHHCSS------CCTTTSEEEEEEEECCEEECC----------CCCCBCSSCCEEEEEE------
T ss_pred cCHHHHHHHHHHHHHHHhccc------CCCCCcEEEEeeeCCCChhHHHHhcCC----CCCccccccCceeccC------
Confidence 7777765 444554 222 45443 567778999999988665431 1124799999999998
Q ss_pred CCCchHHHHHHHHHHHHHHHH----cCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCCh-HHHHHHHH
Q 015873 143 FMPLSHVLATKLGARLTEVRK----NSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTN-DEIAADLK 217 (399)
Q Consensus 143 ~MPl~i~lAh~L~~rl~~~Rk----~~~~~~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~-~~l~~~i~ 217 (399)
||+- ..+|+..++..=. ...+|+.+.|-|.-- + ++. ..+. +-|..-.|| .|-.+.+. -+.++.++
T Consensus 172 --PlS~--~E~~Vl~~E~~Lns~~~k~~~P~~GeDIKVMG-~--R~g-~~i~-LTvA~a~v~-r~v~~~~~Y~~~K~~v~ 241 (407)
T 4hpv_A 172 --PLTK--LEKLVYETERHLNSKQFKAKLPEVGEDIKVMG-L--RRG-NEVD-LTIAMATIS-ELIEDVNHYINVKEQVR 241 (407)
T ss_dssp --SCCH--HHHHHHHHHHHHHSHHHHHHCTTEEEEEEEEE-E--EET-TEEE-EEEEEEEEG-GGCCSHHHHHHHHHHHH
T ss_pred --CCCH--HHHHHHHHHHHhcchhhhhhCcccCCceEEEE-E--eeC-CeEE-EEEEhhhhh-hhhCCHHHHHHHHHHHH
Confidence 4432 2333333333211 135899999999763 3 322 2111 222222222 33333321 23444444
Q ss_pred HhhcccccCCCCCCC-CcEEEEcCCCC-------eEEccC---CCCcCCCCceEEEecC-CCccccccccCcCCCCC-cc
Q 015873 218 EHVIKPVIPEKYLDE-KTIFHLNPSGR-------FVIGGP---HGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDPT-KV 284 (399)
Q Consensus 218 e~Vi~~v~~~~~~~~-~t~~~INPtG~-------FviGGP---~~DtGLTGRKiiVDTY-GG~a~HGGGAfSGKDpt-KV 284 (399)
+.|-+- +. ++-+. +.+++||..-. +++=|. +||.|.+||=.=|--- -.+-|-+==|=+||.|- -|
T Consensus 242 ~~v~~~-a~-~~~~~~~v~v~vNt~D~~~~g~~YLTvtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HV 319 (407)
T 4hpv_A 242 NQILDL-AS-KIAPGYNVRVYVNTGDKIDKNILYLTVTGTSAEHGDDGMTGRGNRGVGLITPMRPMSLEATAGKNPVNHV 319 (407)
T ss_dssp HHHHHH-HH-HHCTTSEEEEEECTTCBGGGTBCCEESSSCGGGGTCCEETTSSCCTTSSBCTTSCCCCCCCTTSCTTTCH
T ss_pred HHHHHH-HH-hcCCCCceEEEEecCCCcCCCceEEEecccccccCCCcccccCcccccccCCCCCccccccCCCCCccch
Confidence 443331 11 12222 56788997532 233333 6899999994422211 12334556788999983 45
Q ss_pred chhhhHHHHHHHHHHHhh--ccccccEEEEEEEeccc--cceeEEEEecCCCCCC----hHHHHHHHHHhC
Q 015873 285 DRSGAYIVRQAAKSIVAN--GLARRCIVQVSYAIGVP--EPLSVFVDSYGTGKIP----DKEILKIVKESF 347 (399)
Q Consensus 285 DRSaAY~AR~iAKniVaa--Gla~~ceVQlsYAIGva--~Pvsi~V~tfgt~~~~----~~~i~~~v~~~F 347 (399)
=.-=..+|..||+.|++. | .++|.|.|-=-||.| +|....|...-...++ .+++.+++.+..
T Consensus 320 GKIYNvlA~~iA~~I~~~v~g-v~ev~V~llSqIG~PId~P~~a~v~v~~~~g~~~~~~~~~v~~I~~~~L 389 (407)
T 4hpv_A 320 GKLYNVLANLIANKIAQEVKD-VKFSQVQVLGQIGRPIDDPLIANVDVITYDGKLTDETKNEISGIVDEML 389 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-EEEEEEEEECCTTSBTTSCSEEEEEEEETTSCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCC-cceEEEEEecccCCCCCCCeEEEEEEecCCCCChHHHHHHHHHHHHHHH
Confidence 556678899999999984 5 578999999999954 7776666655443343 345666665544
No 7
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=56.30 E-value=49 Score=30.26 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=58.9
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEEcCCCCeEEccCCCCcCCCCceEEEecCCC
Q 015873 192 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 267 (399)
Q Consensus 192 ~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 267 (399)
++|.+||-|+.=.-.+++++|...+..---.|- +|. .+-++++..+|-.||++++=|
T Consensus 13 ~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TG------------------- 73 (198)
T 1mp9_A 13 VNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTG------------------- 73 (198)
T ss_dssp EEEEEEEEEEECCSCCCHHHHHHHSTTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEEC-------------------
T ss_pred eEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccccceEEEcCCCceEEEEeCCCeEEEec-------------------
Confidence 689999999999999999999876654322332 232 113567899999999999765
Q ss_pred ccccccccCcCCCCCccchhhhHHHHHHHHHHHhhcc
Q 015873 268 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 304 (399)
Q Consensus 268 ~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 304 (399)
.|--..+..++|.+++.|-..|.
T Consensus 74 --------------akS~e~a~~a~~~i~~~L~~lG~ 96 (198)
T 1mp9_A 74 --------------AKSTDELIKAVKRIIKTLKKYGM 96 (198)
T ss_dssp --------------CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCC
Confidence 23334677788888888888886
No 8
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=49.23 E-value=43 Score=30.16 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=58.1
Q ss_pred eeEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEEcCCCCeEEccCCCCcCCCCceEEEecCC
Q 015873 191 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYG 266 (399)
Q Consensus 191 p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 266 (399)
.++|++||-|+.=...+++++|...+..---.| -+|. .+-++++..+|-.+|++++=|
T Consensus 8 ~~~I~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TG------------------ 69 (182)
T 1ais_A 8 KLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTG------------------ 69 (182)
T ss_dssp EEEEEEEEEEEECCSCCCHHHHTTTSTTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEE------------------
T ss_pred ceEEEEEEEEEEcCCeeCHHHHHhhCCCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEec------------------
Confidence 468999999999999999999876554322222 1222 123567899999999999766
Q ss_pred CccccccccCcCCCCCccchhhhHHHHHHHHHHHhhcc
Q 015873 267 GWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 304 (399)
Q Consensus 267 G~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 304 (399)
.|--..+.-++|.+++.|-..|+
T Consensus 70 ---------------akS~~~~~~a~~~i~~~L~~lG~ 92 (182)
T 1ais_A 70 ---------------AKSVQDIERAVAKLAQKLKSIGV 92 (182)
T ss_dssp ---------------ESSHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHcCC
Confidence 22334677778888888888886
No 9
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=44.26 E-value=42 Score=30.45 Aligned_cols=80 Identities=19% Similarity=0.343 Sum_probs=57.1
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEEcCCCCeEEccCCCCcCCCCceEEEecCCC
Q 015873 192 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 267 (399)
Q Consensus 192 ~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 267 (399)
++|.+||-|+.=...+++++|...+..---.|- +|. .+-++++..+|-.||++++=|
T Consensus 13 ~~i~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TG------------------- 73 (188)
T 2z8u_A 13 IKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTG------------------- 73 (188)
T ss_dssp CEEEEEEEEEECCSSCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEE-------------------
T ss_pred cEEEEEEEEEEeCCeeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEec-------------------
Confidence 689999999998999999999876654222221 232 123577899999999999765
Q ss_pred ccccccccCcCCCCCccchhhhHHHHHHHHHHHhhcc
Q 015873 268 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 304 (399)
Q Consensus 268 ~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 304 (399)
.|--..+..++|.+|+.|-..|+
T Consensus 74 --------------AkS~e~a~~a~~~~~~~L~~lg~ 96 (188)
T 2z8u_A 74 --------------AKSKEEAEIAIKKIIKELKDAGI 96 (188)
T ss_dssp --------------ESSHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------CCCHHHHHHHHHHHHHHHHhcCC
Confidence 22334677888999998888886
No 10
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=39.03 E-value=26 Score=26.36 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCceEEEEeecCCCh
Q 015873 70 DYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSP 107 (399)
Q Consensus 70 d~~~ivR~~i~~IGY~~~~~gfd~~t~~v~~~i~~QS~ 107 (399)
.+..|.-++..+.||++-...+|.+|..|.-.+..-|-
T Consensus 18 kfaailikvfaelgyndinvtwdgdtvtvegqleggsl 55 (62)
T 2gjh_A 18 KFAAILIKVFAELGYNDINVTWDGDTVTVEGQLEGGSL 55 (62)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEECSSCEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHhCcccceeEEcCCEEEEEeEEcCCcc
Confidence 45678889999999999999999999998877766553
No 11
>3kxy_T EXSE; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=29.59 E-value=34 Score=25.99 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=15.0
Q ss_pred cCcCCCCCccchhhhHHHHHHHHHH
Q 015873 275 AFSGKDPTKVDRSGAYIVRQAAKSI 299 (399)
Q Consensus 275 AfSGKDptKVDRSaAY~AR~iAKni 299 (399)
|.-|.|-| |.|=+|||+|+|+
T Consensus 17 avrgedrs----svaglarwlarnv 37 (66)
T 3kxy_T 17 AVRGEDRS----SVAGLARWLARNV 37 (66)
T ss_dssp CCCCCCCS----CHHHHHHHHHHHT
T ss_pred HHhccchh----hHHHHHHHHHHhc
Confidence 44455543 4678899999997
No 12
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=28.50 E-value=1.7e+02 Score=26.33 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=57.0
Q ss_pred eeEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEEcCCCCeEEccCCCCcCCCCceEEEecCC
Q 015873 191 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYG 266 (399)
Q Consensus 191 p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 266 (399)
.++|.+||-|+.=.-.++++++...+..---+| .+|. .+-++++..+|=.||+.|+=|
T Consensus 4 ~~~I~NiVas~~l~~~ldL~~ia~~~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TG------------------ 65 (180)
T 1ytb_A 4 VPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTG------------------ 65 (180)
T ss_dssp CCEEEEEEEEEECCSCCCHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEE------------------
T ss_pred ceEEEEEEEEEEcCCccCHHHHHhhCCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEe------------------
Confidence 368899999999899999999876543322222 2232 123578899999999999766
Q ss_pred CccccccccCcCCCCCccchhhhHHHHHHHHHHHhhcc
Q 015873 267 GWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 304 (399)
Q Consensus 267 G~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 304 (399)
.|--..+.-+++.+++-|-..|+
T Consensus 66 ---------------aks~e~~~~a~~~i~~~L~~lg~ 88 (180)
T 1ytb_A 66 ---------------AKSEDDSKLASRKYARIIQKIGF 88 (180)
T ss_dssp ---------------ESSHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------------cCCHHHHHHHHHHHHHHHHHcCC
Confidence 23334566668888888877776
No 13
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=26.76 E-value=43 Score=33.60 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=21.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHcCC
Q 015873 142 EFMPLSHVLATKLGARLTEVRKNST 166 (399)
Q Consensus 142 ~~MPl~i~lAh~L~~rl~~~Rk~~~ 166 (399)
.=+|.|+.+||+|+.++.++..-+.
T Consensus 385 v~vPap~~YAhklA~l~~~~~~~~~ 409 (427)
T 2w42_A 385 RNLPVTVNYPKLVAGIIANVNRYGG 409 (427)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcCcchHhHHHHHHHHhhhhhcCC
Confidence 4589999999999999999987444
No 14
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=25.97 E-value=27 Score=28.50 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCceEEEEeecCCCh
Q 015873 70 DYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSP 107 (399)
Q Consensus 70 d~~~ivR~~i~~IGY~~~~~gfd~~t~~v~~~i~~QS~ 107 (399)
.+..|.-++..+.||++-...||.+|..|.-.+..-|-
T Consensus 62 kfaailikvfaelgyndinvtfdgdtvtvegqleggsl 99 (106)
T 1qys_A 62 KFAAILIKVFAELGYNDINVTFDGDTVTVEGQLEGGSL 99 (106)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTEEEEEEEC-----
T ss_pred HHHHHHHHHHHHhCCcceeEEEcCCeEEEEeEEcCCcc
Confidence 46678889999999999999999999998877765553
No 15
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=25.02 E-value=49 Score=27.07 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=21.8
Q ss_pred CCCCCChHHHHHHHHHhCCCChHhHhhh
Q 015873 330 GTGKIPDKEILKIVKESFDFRPGMMTIN 357 (399)
Q Consensus 330 gt~~~~~~~i~~~v~~~Fdl~p~~Ii~~ 357 (399)
|...++-+.|.+.|.+.|+++|..|...
T Consensus 1 ~~~~it~~~I~~~Va~~f~v~~~dl~s~ 28 (101)
T 3pvv_A 1 GPHMISAATIMAATAEYFDTTVEELRGP 28 (101)
T ss_dssp ----CCHHHHHHHHHHHTTCCHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHhCC
Confidence 3456888999999999999999998754
Done!