RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 015873
(399 letters)
>gnl|CDD|177886 PLN02243, PLN02243, S-adenosylmethionine synthase.
Length = 386
Score = 845 bits (2185), Expect = 0.0
Identities = 363/386 (94%), Positives = 373/386 (96%)
Query: 7 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 66
METFLFTSESVNEGHPDKLCDQISDAVLDACL QDP+SKVACETCTKTNMVMVFGEITTK
Sbjct: 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60
Query: 67 AKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 126
AKVDYEKIVRDTCR IGFVSDDVGLDAD CKVLVNIEQQSPDIAQGVHGH TK+PE+IGA
Sbjct: 61 AKVDYEKIVRDTCREIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGA 120
Query: 127 GDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDN 186
GDQGHMFGYATDET E MPL+HVLATKLGARLTEVRKN TC WLRPDGKTQVTVEY N+
Sbjct: 121 GDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKNEG 180
Query: 187 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 246
GAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI
Sbjct: 181 GAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240
Query: 247 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 306
GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKS+VA GLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLAR 300
Query: 307 RCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNG 366
RCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGM+ INLDLKRGGNG
Sbjct: 301 RCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNG 360
Query: 367 RFLKTAAYGHFGRDDPDFTWEVVKPL 392
RF KTAAYGHFGRDDPDFTWEVVKPL
Sbjct: 361 RFQKTAAYGHFGRDDPDFTWEVVKPL 386
>gnl|CDD|240268 PTZ00104, PTZ00104, S-adenosylmethionine synthase; Provisional.
Length = 398
Score = 729 bits (1885), Expect = 0.0
Identities = 281/400 (70%), Positives = 319/400 (79%), Gaps = 8/400 (2%)
Query: 1 MDLLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVF 60
L + FLFTSESV+EGHPDKLCDQISDAVLDACL QDP SKVACETC KT MVMVF
Sbjct: 2 TFLKMSVGHFLFTSESVSEGHPDKLCDQISDAVLDACLAQDPLSKVACETCAKTGMVMVF 61
Query: 61 GEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKR 120
GEITTKA VDY+K+VRDT + IG+ + GLD C VLV IEQQSPDIAQGVH K+
Sbjct: 62 GEITTKAVVDYQKVVRDTVKEIGYDDTEKGLDYKTCNVLVAIEQQSPDIAQGVHVG--KK 119
Query: 121 PEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTV 180
EDIGAGDQG MFGYATDET E MPL+H LATKL RL+E+RKN WLRPD KTQVTV
Sbjct: 120 EEDIGAGDQGIMFGYATDETEELMPLTHELATKLAKRLSELRKNGILPWLRPDAKTQVTV 179
Query: 181 EY-YNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLN 239
EY Y+ G + P RVHT+LISTQHDE V+N+EI DL EHVIKPVIP K LDE+T +HLN
Sbjct: 180 EYEYDTRGGLTPKRVHTILISTQHDEGVSNEEIREDLMEHVIKPVIPAKLLDEETKYHLN 239
Query: 240 PSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSI 299
PSGRFVIGGPHGDAGLTGRKII+DTYGGWGAHGGGAFSGKDP+KVDRS AY R AKS+
Sbjct: 240 PSGRFVIGGPHGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPSKVDRSAAYAARWIAKSL 299
Query: 300 VANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIP--DKEILKIVKESFDFRPGMMTIN 357
VA GL +RC+VQVSYAIGV EPLS+ V++YGTGK D+++L+IV+++FD RPG +
Sbjct: 300 VAAGLCKRCLVQVSYAIGVAEPLSIHVNTYGTGKKGYDDEDLLEIVQKNFDLRPGDIIKE 359
Query: 358 LDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKP 397
LDL+R F KTA+YGHFGR DP+FTWEV K L+ EK
Sbjct: 360 LDLRRPI---FQKTASYGHFGRSDPEFTWEVPKDLEHEKD 396
>gnl|CDD|235374 PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.
Length = 384
Score = 661 bits (1709), Expect = 0.0
Identities = 230/378 (60%), Positives = 284/378 (75%), Gaps = 10/378 (2%)
Query: 10 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKV 69
+LFTSESV+EGHPDK+ DQISDA+LDA L QDP ++VACET T +V+V GEITT A V
Sbjct: 3 YLFTSESVSEGHPDKIADQISDAILDAILAQDPNARVACETLVTTGLVVVAGEITTSAYV 62
Query: 70 DYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQ 129
D E+IVR+T + IG+ S + G DA+ C VLV+I +QSPDIAQGV ++IGAGDQ
Sbjct: 63 DIEEIVRETIKEIGYTSSEYGFDANTCAVLVSIGEQSPDIAQGVD---RDELDEIGAGDQ 119
Query: 130 GHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAM 189
G MFGYA +ET E MPL LA +L RL EVRK+ T +LRPD K+QVTVEY N
Sbjct: 120 GIMFGYACNETPELMPLPITLAHRLVRRLAEVRKSGTLPYLRPDAKSQVTVEYENGK--- 176
Query: 190 VPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGP 249
PVR+ T+++STQHD V+ +++ D+ E VIKPV+P + LDE T F +NP+GRFVIGGP
Sbjct: 177 -PVRIDTIVVSTQHDPDVSQEQLREDVIEEVIKPVLPAELLDEDTKFLINPTGRFVIGGP 235
Query: 250 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCI 309
GDAGLTGRKII+DTYGG+ HGGGAFSGKDPTKVDRS AY R AK+IVA GLA RC
Sbjct: 236 QGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCE 295
Query: 310 VQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFL 369
VQ+SYAIGV EP+S++VD++GTGK+ D++I + V+E FD RP + LDL+R +
Sbjct: 296 VQLSYAIGVAEPVSIYVDTFGTGKVSDEKIEEAVREVFDLRPAGIIKMLDLRR---PIYR 352
Query: 370 KTAAYGHFGRDDPDFTWE 387
KTAAYGHFGR+D DF WE
Sbjct: 353 KTAAYGHFGREDLDFPWE 370
>gnl|CDD|223270 COG0192, MetK, S-adenosylmethionine synthetase [Coenzyme
metabolism].
Length = 388
Score = 617 bits (1594), Expect = 0.0
Identities = 226/381 (59%), Positives = 281/381 (73%), Gaps = 8/381 (2%)
Query: 7 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 66
+ FLFTSESV+EGHPDK+CDQISDA+LDA L+QDP S+VACET T +V++ GEITT
Sbjct: 2 KKYFLFTSESVSEGHPDKICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTS 61
Query: 67 AKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 126
A VD I R T + IG+ D G DA C VLV I +QSPDIAQGV + ++IGA
Sbjct: 62 AYVDIVNIARKTIKEIGYTESDYGFDAKTCAVLVAIGEQSPDIAQGVDEA-DEELDEIGA 120
Query: 127 GDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDN 186
GDQG MFGYA +ET E MPL LA +L RL EVRKN WLRPD K+QVTVEY ++
Sbjct: 121 GDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGELPWLRPDAKSQVTVEYEDNG 180
Query: 187 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 246
PVR+ T+++STQHD ++ +++ D+ E +IKPV+PE+ LD+KT + +NP+GRFVI
Sbjct: 181 ---KPVRIDTIVVSTQHDPDISQEQLREDVIEEIIKPVLPEELLDDKTKYFINPTGRFVI 237
Query: 247 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 306
GGP GDAGLTGRKII+DTYGG+ HGGGAFSGKDPTKVDRS AY R AK+IVA GLA
Sbjct: 238 GGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLAD 297
Query: 307 RCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNG 366
RC VQ+SYAIGV EP+S+ VD++GTGK+ +++I + V++ FD RP + LDL R
Sbjct: 298 RCEVQLSYAIGVAEPVSISVDTFGTGKVSEEKIEEAVRKVFDLRPAGIIKMLDLLR---P 354
Query: 367 RFLKTAAYGHFGRDDPDFTWE 387
+ KTAAYGHFGR+D DF WE
Sbjct: 355 IYRKTAAYGHFGRED-DFPWE 374
>gnl|CDD|233241 TIGR01034, metK, S-adenosylmethionine synthetase. Tandem isozymes
of this S-adenosylmethionine synthetase in E. coli are
designated MetK and MetX [Central intermediary
metabolism, Other].
Length = 377
Score = 578 bits (1492), Expect = 0.0
Identities = 225/383 (58%), Positives = 281/383 (73%), Gaps = 12/383 (3%)
Query: 11 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVD 70
LFTSESV+EGHPDK+ DQISDAVLDA L+QDP++KVACET KT +V++ GEITT A VD
Sbjct: 1 LFTSESVSEGHPDKIADQISDAVLDAILKQDPKAKVACETFVKTGLVLIGGEITTSAYVD 60
Query: 71 YEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQG 130
+++ R+T + IG+ D G DA C VLV I QSPDIAQGV PE+ GAGDQG
Sbjct: 61 IQEVARNTIKDIGYTDSDYGFDAKTCAVLVAIGNQSPDIAQGVDK---ANPEEQGAGDQG 117
Query: 131 HMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMV 190
MFGYAT+ET E MPL LA KL R E+RK+ T WLRPDGK+QVTV+Y ++
Sbjct: 118 IMFGYATNETPELMPLPITLAHKLLKRAAELRKSGTLPWLRPDGKSQVTVQYEDNK---- 173
Query: 191 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPH 250
PVRV T+++STQHD ++ ++ + E +IKPV+P +YLDEKT F +NP+GRFVIGGP
Sbjct: 174 PVRVDTIVLSTQHDPDISQKDLREAIIEEIIKPVLPAEYLDEKTKFFINPTGRFVIGGPM 233
Query: 251 GDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIV 310
GD GLTGRKII+DTYGGW HGGGAFSGKDP+KVDRS AY R AK+IVA GLA RC V
Sbjct: 234 GDTGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLADRCEV 293
Query: 311 QVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLK 370
Q+SYAIGV EP+S+ ++++GT K ++E+L +VKE+FD RPG + LDL + + K
Sbjct: 294 QLSYAIGVAEPVSIMIETFGTSKKSEEELLNVVKENFDLRPGGIIEKLDLLK---PIYRK 350
Query: 371 TAAYGHFGRDDPDFTWEVVKPLK 393
TA YGHFGR+ +F WE L+
Sbjct: 351 TAVYGHFGRE--EFPWEKPDKLE 371
>gnl|CDD|237106 PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional.
Length = 386
Score = 531 bits (1371), Expect = 0.0
Identities = 220/385 (57%), Positives = 275/385 (71%), Gaps = 13/385 (3%)
Query: 7 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 66
M TFLFTSESV EGHPDKLCDQISDA+LDACL QDP S+VACE T +V+V GEIT+
Sbjct: 1 MSTFLFTSESVTEGHPDKLCDQISDAILDACLRQDPASRVACEVLVSTGIVIVAGEITSS 60
Query: 67 AKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVH--GHFTKRPEDI 124
AKVD EKIVR+ + IG+ D++G D C VLV++ +QSPDIAQGV + E++
Sbjct: 61 AKVDIEKIVRNVIKEIGY--DELGFDPRTCTVLVSLGEQSPDIAQGVDTAEGRDEELEEL 118
Query: 125 GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYN 184
GAGDQG MFGYA DET E MPL VLA +L RL + RK+ L PDGKTQVTVEY +
Sbjct: 119 GAGDQGTMFGYACDETPELMPLPIVLAHRLAKRLDQARKDGLLPGLLPDGKTQVTVEYED 178
Query: 185 DNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 244
PVRV T+++S QHDE+V + + D+ E+VIKPV + +LD++T +NP+GRF
Sbjct: 179 G----RPVRVDTIVVSAQHDESVDLETLRRDVIENVIKPVFEDFWLDDETRILINPTGRF 234
Query: 245 VIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 304
V+GGP D GLTGRKI++DTYGG+ HGGGAFSGKDP+KVDRS AY R AK+IVA GL
Sbjct: 235 VVGGPAADTGLTGRKIMVDTYGGYARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGL 294
Query: 305 ARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGG 364
A+RC VQ+SYAIG P+SV V+++GTG + D+E+ + V+E FD RP + L+L+
Sbjct: 295 AKRCEVQLSYAIGKARPVSVQVNTFGTGTVSDEELTRAVREHFDLRPAGIIEKLNLR--- 351
Query: 365 NGRFLKTAAYGHFGRDDPDFTWEVV 389
N + KTAAYGHFGR F WE
Sbjct: 352 NPIYRKTAAYGHFGRT--LFPWEKT 374
>gnl|CDD|111646 pfam02773, S-AdoMet_synt_C, S-adenosylmethionine synthetase,
C-terminal domain. The three domains of
S-adenosylmethionine synthetase have the same alpha+beta
fold.
Length = 138
Score = 253 bits (647), Expect = 2e-84
Identities = 100/142 (70%), Positives = 117/142 (82%), Gaps = 5/142 (3%)
Query: 246 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLA 305
IGGP GDAGLTGRKII+DTYGGWGAHGGGAFSGKDPTKVDRS AY R AKS+VA GLA
Sbjct: 1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVAAGLA 60
Query: 306 RRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGN 365
RRC+VQVSYAIGV EPLS+ VD+YGT K ++E+L+IV+++FD RPG++ LDLK+
Sbjct: 61 RRCLVQVSYAIGVAEPLSIMVDTYGTSKKSEEELLEIVRKNFDLRPGVIVKMLDLKK--- 117
Query: 366 GRFLKTAAYGHFGRDDPDFTWE 387
+ +TAAYGHFGRD DF WE
Sbjct: 118 PIYQQTAAYGHFGRD--DFPWE 137
>gnl|CDD|217221 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine synthetase,
central domain. The three domains of
S-adenosylmethionine synthetase have the same alpha+beta
fold.
Length = 119
Score = 224 bits (575), Expect = 1e-73
Identities = 72/123 (58%), Positives = 92/123 (74%), Gaps = 4/123 (3%)
Query: 122 EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVE 181
++IGAGDQG MFGYAT+ET E MPL VLA +L RL E+RKN T +LRPDGK+QVTVE
Sbjct: 1 DEIGAGDQGIMFGYATNETPELMPLPIVLAHRLLRRLAELRKNGTLPYLRPDGKSQVTVE 60
Query: 182 YYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPS 241
Y + PVRV TV++STQHD V+ +E+ D+ E VIKPV+PE+ LD+ T + +NP+
Sbjct: 61 YEDGK----PVRVDTVVVSTQHDPDVSLEELREDIIEEVIKPVLPEELLDDDTKYLINPT 116
Query: 242 GRF 244
GRF
Sbjct: 117 GRF 119
>gnl|CDD|201226 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine synthetase,
N-terminal domain. The three domains of
S-adenosylmethionine synthetase have the same alpha+beta
fold.
Length = 100
Score = 195 bits (498), Expect = 2e-62
Identities = 64/100 (64%), Positives = 78/100 (78%)
Query: 8 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKA 67
+LFTSESV+EGHPDK+CDQISDA+LDA L QDP S+VACET T +V+V GEITT A
Sbjct: 1 SRYLFTSESVSEGHPDKICDQISDAILDAFLAQDPNSRVACETLVTTGLVVVAGEITTSA 60
Query: 68 KVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSP 107
VD EKIVR+ + IG+ S ++G DAD C VLV+I +QSP
Sbjct: 61 YVDIEKIVREVIKDIGYDSSELGFDADTCAVLVSIHEQSP 100
>gnl|CDD|132483 TIGR03442, TIGR03442, ergothioneine biosynthesis protein EgtC.
Members of this strictly bacterial protein family show
similarity to class II glutamine amidotransferases (see
pfamam family pfam00310). They are distinguished by
appearing in a genome context with, and usually adjacent
to or between, members of families TIGR03438 (an
uncharacterized methyltransferase) and TIGR03440 (an
uncharacterized protein) [Biosynthesis of cofactors,
prosthetic groups, and carriers, Glutathione and
analogs].
Length = 251
Score = 35.9 bits (83), Expect = 0.024
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 155 GARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTN 209
G+RL R T WL+ V E Y+D+ V +L ++ D T+T
Sbjct: 196 GSRLVATRWADTLYWLKDPEGVIVASEPYDDDPGWQDVPDRHLLSVSEDDVTITP 250
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 35.7 bits (83), Expect = 0.037
Identities = 14/61 (22%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 86 SDDVGLDADHCKVLVNIEQQSPDI----AQGVHGHFTKRPEDIGAGDQGHMFGYATDETS 141
V LDAD ++ P G+ RP + M G TDE
Sbjct: 307 GAHVYLDADGSLDAEGLKATLPAFNEEAIFGLDVDPYDRPIPVFPAQHYTMGGVRTDENG 366
Query: 142 E 142
Sbjct: 367 R 367
>gnl|CDD|227021 COG4676, COG4676, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 268
Score = 31.3 bits (71), Expect = 0.68
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 172 PDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKP 223
DG+++ V++Y N R+ VL + D DL HV+ P
Sbjct: 121 ADGQSRQRVQFYETNAGKTRARLRVVL---------SWDTDNTDLDLHVVTP 163
>gnl|CDD|217121 pfam02582, DUF155, Uncharacterized ACR, YagE family COG1723.
Length = 174
Score = 29.0 bits (66), Expect = 2.8
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 24/96 (25%)
Query: 297 KSIVANGLARRCIV-----QVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRP 351
K +++ LA+ + QV + EPL + G + KE+LK++ E R
Sbjct: 72 KLAISHALAQSVKLSVFEEQVDNLLESTEPLPEELAKTGKLNLSRKELLKLIGELLSLR- 130
Query: 352 GMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 387
INL L D PDF W+
Sbjct: 131 --HRINL------YSDLL----------DTPDFFWD 148
>gnl|CDD|182361 PRK10294, PRK10294, 6-phosphofructokinase 2; Provisional.
Length = 309
Score = 29.8 bits (67), Expect = 2.9
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 275 AFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSY--AIGVPEPLSVFV 326
A +D T+ D VR+AA+ +V +G A+R +V + A+GV + V
Sbjct: 193 ALVNRDLTQPDD-----VRKAAQELVNSGKAKRVVVSLGPQGALGVDSENCIQV 241
>gnl|CDD|216266 pfam01051, Rep_3, Initiator Replication protein. This protein is
an initiator of plasmid replication. RepB possesses
nicking-closing (topoisomerase I) like activity. It is
also able to perform a strand transfer reaction on ssDNA
that contains its target. This family also includes RepA
which is an E.coli protein involved in plasmid
replication. The RepA protein binds to DNA repeats that
flank the repA gene.
Length = 218
Score = 29.2 bits (66), Expect = 3.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 214 ADLKEHVIKPVIPEKYLDEKTIFHLNPS----GRFVIG 247
D K V+KP I E ++EKT +L GR ++G
Sbjct: 178 KDFKRRVLKPAIKE--INEKTDINLEYEKIKKGRKIVG 213
>gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase. This model
represents a subfamily of the short chain
dehydrogenases. Characterized members so far as
3-hydroxybutyrate dehydrogenases and are found in
species that accumulate ester polmers called
polyhydroxyalkanoic acids (PHAs) under certain
conditions. Several members of the family are from
species not known to accumulate PHAs, including
Oceanobacillus iheyensis and Bacillus subtilis. However,
polymer formation is not required for there be a role
for 3-hydroxybutyrate dehydrogenase; it may be members
of this family have the same function in those species.
Length = 255
Score = 29.3 bits (66), Expect = 3.3
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 225 IPEKYLDEKTIFHLNPSGRFV----IGG------PHGDAGLTGRKIIIDTYGGWGAH 271
IPE+ + + + P+ RFV + A +TG+ I++D GGW A
Sbjct: 201 IPEEQVIREVMLKGQPTKRFVTVDEVAETALYLASDAAAQITGQAIVLD--GGWTAQ 255
>gnl|CDD|223576 COG0502, BioB, Biotin synthase and related enzymes [Coenzyme
metabolism].
Length = 335
Score = 29.1 bits (66), Expect = 3.5
Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 30/127 (23%)
Query: 275 AFSGKDPTKVDRSGAYIVRQ---AAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGT 331
+ S + T V V + AAK A G R C+ G
Sbjct: 69 SQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAA---------------GRGP 113
Query: 332 GKIPDK--EILKIVKESFDFR----PGMMTIN--LDLKRGGNGRF---LKTAAYGHFGRD 380
G+ ++ E +K VKE GM+T L G R+ L+T+ +
Sbjct: 114 GRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHNLETSP-EFYENI 172
Query: 381 DPDFTWE 387
T+E
Sbjct: 173 ITTRTYE 179
>gnl|CDD|235298 PRK04439, PRK04439, S-adenosylmethionine synthetase; Provisional.
Length = 399
Score = 29.4 bits (67), Expect = 3.8
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 20 GHPDKLCDQISDAV 33
GHPD +CD I++AV
Sbjct: 28 GHPDTICDGIAEAV 41
>gnl|CDD|130300 TIGR01233, lacG, 6-phospho-beta-galactosidase. This enzyme is part
of the tagatose-6-phosphate pathway of
galactose-6-phosphate degradation [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 467
Score = 28.5 bits (63), Expect = 6.4
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 281 PTKVDRSGAYIVRQAAKSIVANGLARRCI---VQVSYAIGVPEPLSVFVDSYGTGKIPDK 337
P + +G ++ R+ + + A C +V+Y E + Y GK P
Sbjct: 119 PEALHSNGDFLNRENIEHFID--YAAFCFEEFPEVNYWTTFNEIGPIGDGQYLVGKFPPG 176
Query: 338 E 338
Sbjct: 177 I 177
>gnl|CDD|216800 pfam01941, AdoMet_Synthase, S-adenosylmethionine synthetase
(AdoMet synthetase). This family consists of several
archaebacterial S-adenosylmethionine synthetase
C(AdoMet synthetase or MAT) (EC 2.5.1.6).
S-Adenosylmethionine (AdoMet) occupies a central role
in the metabolism of all cells. The biological roles of
AdoMet include acting as the primary methyl group
donor, as a precursor to the polyamines, and as a
progenitor of a 5'-deoxyadenosyl radical.
S-Adenosylmethionine synthetase catalyzes the only
known route of AdoMet biosynthesis. The synthetic
process occurs in a unique reaction in which the
complete triphosphate chain is displaced from ATP and a
sulfonium ion formed. MATs from various organisms
contain ~400-amino acid polypeptide chains.
Length = 396
Score = 28.3 bits (64), Expect = 8.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 20 GHPDKLCDQISDAV 33
GHPD +CD I++AV
Sbjct: 28 GHPDSICDGIAEAV 41
>gnl|CDD|220710 pfam10351, Apt1, Golgi-body localisation protein domain. This is
the C-terminus of a family of proteins conserved from
plants to humans. The plant members are localised to the
Golgi proteins and appear to regulate membrane
trafficking, as they are required for rapid vesicle
accumulation at the tip of the pollen tube. The
C-terminus probably contains the Golgi localisation
signal and it is well-conserved.
Length = 451
Score = 28.0 bits (63), Expect = 8.7
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 203 HDETVTNDEIAADLKEHVIKPVI 225
H++T + ++A LK+ VIK ++
Sbjct: 425 HNKTWSWLDLALALKKDVIKALL 447
>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active
dehydrogenase/acetaldehyde-active reductase;
Provisional.
Length = 338
Score = 28.1 bits (63), Expect = 9.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 300 VANGLARRCIVQVSYAIGVPEPL 322
V G+A +CIV YA+ VPE L
Sbjct: 114 VDGGMAEQCIVTADYAVKVPEGL 136
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.414
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,857,324
Number of extensions: 2054552
Number of successful extensions: 1771
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1749
Number of HSP's successfully gapped: 30
Length of query: 399
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 300
Effective length of database: 6,546,556
Effective search space: 1963966800
Effective search space used: 1963966800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)