BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015874
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 45/244 (18%)
Query: 11 ENKTILVSGVTGFVAKVFIEKILRVQPNVKKLYLFVRAADIDSAALRFQNEVLAKDVFNV 70
E +T+L++G TGF+ + + ++LR +L VRA + A R + F+
Sbjct: 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEK------TFDS 125
Query: 71 LKEKWGTRLNSFISEKITFVPGDISSEDLGLKDSNLKEELWNELDIMVNSAA-ITKFDER 129
+ ++++ V GD S DLGL D L +D++V+SAA + F
Sbjct: 126 GDPELLRHFKELAADRLEVVAGDKSEPDLGL-DQPXWRRLAETVDLIVDSAAXVNAFP-- 182
Query: 130 YDVAFGINTLGVIHLVNFAKKCVKLKVFVHVSTAYVAGERTGLILENPLDGASGLDFDAE 189
Y FG N G L+ A KLK F +VSTA V G +E S DA+
Sbjct: 183 YHELFGPNVAGTAELIRIA-LTTKLKPFTYVSTADV-----GAAIE-----PSAFTEDAD 231
Query: 190 MKVIDQKLNELKTKGAPQKEITLFMKNLGTERAKLHGWPNTYVFTKTMGEMLMQQSKENL 249
++VI +P + + GW Y +K GE+L++++ +
Sbjct: 232 IRVI-----------SPTRTVD-------------GGWAGGYGTSKWAGEVLLREANDLC 267
Query: 250 SLVI 253
+L +
Sbjct: 268 ALPV 271
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
Length = 344
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 1 MELGSVVEFLENKTILVSGVTGFVAKVFIEKILRVQPNVKKLYLFVR 47
M + + L+N+TIL++G TG K F+ K+L N KK+ ++ R
Sbjct: 10 MSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTT-NAKKIIVYSR 55
>pdb|1K2W|A Chain A, Crystal Structure Of Sorbitol Dehydrogenase From R.
Sphaeroides
pdb|1K2W|B Chain B, Crystal Structure Of Sorbitol Dehydrogenase From R.
Sphaeroides
Length = 256
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 50/174 (28%)
Query: 10 LENKTILVSGVTGFVAKVFIEKILRVQPNVKKLYLFVRAADIDSAALRFQNEVLAKDVFN 69
L+ KT L++G + + F E +R V + + AA +A + +A DV +
Sbjct: 3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTD 62
Query: 70 VLKEKWGTRLNSFISEKITFVPGDISSEDLGLKDSNLKEELWNELDIMVNSAAITKFD-- 127
++ ++E + + W +DI+VN+AA+ FD
Sbjct: 63 QAS------IDRCVAELL---------------------DRWGSIDILVNNAAL--FDLA 93
Query: 128 -------ERYDVAFGINTLGVIHLVNFAKKCVKLKVFVHVSTAYVAGERTGLIL 174
E YD F IN G + ++ V+ A +AG R G I+
Sbjct: 94 PIVEITRESYDRLFAINVSGTLFMMQ------------AVARAMIAGGRGGKII 135
>pdb|4B79|A Chain A, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery.
pdb|4B79|B Chain B, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery.
pdb|4AVY|A Chain A, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery.
pdb|4AVY|B Chain B, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery
Length = 242
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 94 ISSEDLGLKDSNLKEELWN---ELDIMVNSAAITKFDERYDVA 133
I E+L + DS + L+ LD++VN+A I++ E YD+A
Sbjct: 56 IRREELDITDSQRLQRLFEALPRLDVLVNNAGISRDREEYDLA 98
>pdb|3P7J|A Chain A, Drosophila Hp1a Chromo Shadow Domain
pdb|3P7J|B Chain B, Drosophila Hp1a Chromo Shadow Domain
Length = 87
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 11 ENKTILVSGVTGFVAKVFIEKILRVQPNVKKLYLFVRAADIDSAAL---RFQNEVLAKDV 67
E TI VSG TGF + EKIL N +L ++ +D A + NE + + V
Sbjct: 10 EQDTIPVSGSTGFDRGLEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMV 69
Query: 68 FNVLKEK 74
+ +E+
Sbjct: 70 IHFYEER 76
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 87 ITFVPGDISSEDLGLKDSNLKEELWNE--LDIMVNSAA---ITKFDERYDVAFGINTLGV 141
+ +P D+ +DL + + + +NE ++++N AA + K +E+YD+A+ IN +G
Sbjct: 37 VEVIPTDV--QDLDITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGP 94
Query: 142 IHLVNFAKKCVKLKVFVHVSTAYV 165
+L A V ++ V +ST YV
Sbjct: 95 KNLA-AAAYSVGAEI-VQISTDYV 116
>pdb|3ENN|A Chain A, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|B Chain B, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|C Chain C, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|D Chain D, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
Length = 249
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 79 LNSFISEKITFVPGDISSEDLGLKDSNLKEELWNELDIMVNSAAITK-------FDERYD 131
L + + E+I P ++S + EE +DI+VN+A IT+ DE +D
Sbjct: 50 LAAELGERIFVFPANLSDREAVKALGQKAEEEMGGVDILVNNAGITRDGLFVRMSDEDWD 109
Query: 132 VAFGINTLGVIHL 144
+N V +L
Sbjct: 110 AVLTVNLTSVFNL 122
>pdb|3EMK|A Chain A, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|B Chain B, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|C Chain C, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|D Chain D, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
Length = 246
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 79 LNSFISEKITFVPGDISSEDLGLKDSNLKEELWNELDIMVNSAAITK-------FDERYD 131
L + + E+I P ++S + EE +DI+VN+A IT+ DE +D
Sbjct: 47 LAAELGERIFVFPANLSDREAVKALGQKAEEEMGGVDILVNNAGITRDGLFVRMSDEDWD 106
Query: 132 VAFGINTLGVIHL 144
+N V +L
Sbjct: 107 AVLTVNLTSVFNL 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,478,086
Number of Sequences: 62578
Number of extensions: 404614
Number of successful extensions: 1050
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 16
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)