Query 015875
Match_columns 399
No_of_seqs 478 out of 2931
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 01:42:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0729 26S proteasome regulat 100.0 2E-101 5E-106 698.1 28.1 399 1-399 37-435 (435)
2 COG1222 RPT1 ATP-dependent 26S 100.0 2.2E-91 4.8E-96 657.9 36.9 390 2-395 16-405 (406)
3 KOG0728 26S proteasome regulat 100.0 1.6E-79 3.4E-84 551.7 25.3 377 4-389 19-395 (404)
4 KOG0727 26S proteasome regulat 100.0 2E-68 4.3E-73 480.4 25.4 327 56-386 74-400 (408)
5 KOG0726 26S proteasome regulat 100.0 2.3E-68 5E-73 488.2 22.8 327 56-386 104-430 (440)
6 KOG0652 26S proteasome regulat 100.0 1.6E-66 3.5E-71 470.0 24.4 343 44-386 57-416 (424)
7 PTZ00454 26S protease regulato 100.0 2.5E-58 5.4E-63 457.8 34.2 369 8-385 21-389 (398)
8 PTZ00361 26 proteosome regulat 100.0 4.2E-57 9.1E-62 451.7 34.6 332 51-386 97-428 (438)
9 PRK03992 proteasome-activating 100.0 1.6E-54 3.5E-59 432.0 35.5 372 9-389 8-379 (389)
10 KOG0651 26S proteasome regulat 100.0 7.9E-56 1.7E-60 409.2 17.0 319 60-383 56-374 (388)
11 KOG0730 AAA+-type ATPase [Post 100.0 5E-55 1.1E-59 438.5 23.9 262 122-386 415-678 (693)
12 TIGR01242 26Sp45 26S proteasom 100.0 1.4E-51 3E-56 408.6 36.4 358 9-382 6-363 (364)
13 KOG0733 Nuclear AAA ATPase (VC 100.0 1.6E-52 3.5E-57 415.1 25.1 262 122-386 492-773 (802)
14 KOG0734 AAA+-type ATPase conta 100.0 6.8E-50 1.5E-54 391.1 21.4 252 134-389 297-548 (752)
15 KOG0736 Peroxisome assembly fa 100.0 4.5E-48 9.7E-53 391.8 24.7 254 131-386 662-936 (953)
16 KOG0731 AAA+-type ATPase conta 100.0 5.5E-47 1.2E-51 390.9 25.3 254 133-387 303-558 (774)
17 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-46 2.2E-51 373.9 21.9 225 136-365 185-414 (802)
18 KOG0738 AAA+-type ATPase [Post 100.0 6.3E-46 1.4E-50 352.2 19.9 251 131-386 202-473 (491)
19 COG0465 HflB ATP-dependent Zn 100.0 1.5E-45 3.2E-50 374.7 21.9 260 131-391 140-399 (596)
20 COG1223 Predicted ATPase (AAA+ 100.0 2.7E-43 5.8E-48 318.9 20.1 242 133-382 113-355 (368)
21 TIGR03689 pup_AAA proteasome A 100.0 3.7E-42 7.9E-47 348.6 28.7 322 63-393 111-489 (512)
22 TIGR01243 CDC48 AAA family ATP 100.0 1.8E-41 3.9E-46 363.6 26.8 254 131-386 443-714 (733)
23 COG0464 SpoVK ATPases of the A 100.0 2.5E-41 5.4E-46 348.2 24.5 250 133-385 234-486 (494)
24 TIGR01241 FtsH_fam ATP-depende 100.0 4.2E-41 9.2E-46 346.0 25.9 254 132-386 46-299 (495)
25 KOG0735 AAA+-type ATPase [Post 100.0 3.2E-41 6.9E-46 339.3 23.7 230 133-365 659-888 (952)
26 KOG0739 AAA+-type ATPase [Post 100.0 3.2E-42 6.9E-47 317.1 13.1 231 129-365 121-353 (439)
27 KOG0737 AAA+-type ATPase [Post 100.0 5E-41 1.1E-45 318.7 20.2 246 135-385 86-362 (386)
28 CHL00176 ftsH cell division pr 100.0 4.6E-40 1E-44 343.2 25.7 253 134-387 176-428 (638)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 9.2E-39 2E-43 324.2 25.2 243 135-385 222-466 (489)
30 PRK10733 hflB ATP-dependent me 100.0 3.9E-37 8.4E-42 324.2 25.9 252 134-386 145-396 (644)
31 CHL00206 ycf2 Ycf2; Provisiona 100.0 8.9E-37 1.9E-41 334.4 23.6 217 163-388 1618-1883(2281)
32 KOG0730 AAA+-type ATPase [Post 100.0 5.1E-36 1.1E-40 301.6 21.2 239 136-385 180-419 (693)
33 KOG0732 AAA+-type ATPase conta 100.0 2.3E-35 4.9E-40 312.1 19.9 255 129-386 253-529 (1080)
34 TIGR01243 CDC48 AAA family ATP 100.0 2.4E-34 5.1E-39 308.7 25.7 249 135-386 172-439 (733)
35 KOG0740 AAA+-type ATPase [Post 100.0 3.5E-35 7.6E-40 288.0 14.7 253 128-386 140-408 (428)
36 KOG0741 AAA+-type ATPase [Post 100.0 3.9E-35 8.4E-40 287.4 14.3 252 134-386 212-494 (744)
37 PLN00020 ribulose bisphosphate 100.0 1.5E-32 3.2E-37 263.6 20.3 205 135-346 109-331 (413)
38 COG2204 AtoC Response regulato 99.9 4.5E-25 9.8E-30 219.9 5.7 289 44-376 64-385 (464)
39 CHL00181 cbbX CbbX; Provisiona 99.9 1.6E-22 3.6E-27 193.7 20.9 207 141-361 23-253 (287)
40 TIGR02880 cbbX_cfxQ probable R 99.9 9E-22 1.9E-26 188.6 19.9 208 142-362 23-253 (284)
41 KOG0743 AAA+-type ATPase [Post 99.9 6.1E-22 1.3E-26 193.6 17.6 210 135-354 195-412 (457)
42 TIGR02881 spore_V_K stage V sp 99.9 2.6E-21 5.6E-26 183.5 20.9 222 140-375 5-253 (261)
43 PF00004 AAA: ATPase family as 99.9 8.1E-22 1.7E-26 166.4 13.5 130 178-311 1-132 (132)
44 PF05496 RuvB_N: Holliday junc 99.9 3.7E-21 7.9E-26 174.3 18.4 199 133-361 16-228 (233)
45 KOG0744 AAA+-type ATPase [Post 99.9 3.4E-22 7.5E-27 186.8 11.6 243 138-384 139-416 (423)
46 KOG0736 Peroxisome assembly fa 99.9 1.3E-20 2.8E-25 192.7 20.6 244 142-395 402-666 (953)
47 PRK00080 ruvB Holliday junctio 99.9 3.2E-20 6.9E-25 181.8 21.6 220 133-382 17-250 (328)
48 COG2256 MGS1 ATPase related to 99.9 1.9E-20 4.1E-25 180.4 19.0 207 133-384 16-240 (436)
49 TIGR00635 ruvB Holliday juncti 99.8 8.9E-20 1.9E-24 176.7 21.4 214 139-382 2-229 (305)
50 KOG0735 AAA+-type ATPase [Post 99.8 4.1E-20 9E-25 187.5 19.6 232 141-384 408-650 (952)
51 COG2255 RuvB Holliday junction 99.8 2.1E-19 4.5E-24 166.1 20.1 218 135-382 20-251 (332)
52 TIGR02902 spore_lonB ATP-depen 99.8 2.8E-20 6.1E-25 192.5 15.9 225 128-381 52-331 (531)
53 KOG0742 AAA+-type ATPase [Post 99.8 1.4E-19 3.1E-24 173.7 18.9 237 135-384 349-614 (630)
54 TIGR02639 ClpA ATP-dependent C 99.8 2.2E-19 4.7E-24 192.8 20.2 224 134-382 175-429 (731)
55 COG0464 SpoVK ATPases of the A 99.8 7.8E-19 1.7E-23 181.2 21.8 222 159-385 2-229 (494)
56 PRK04195 replication factor C 99.8 9.3E-19 2E-23 179.8 21.5 213 129-379 2-222 (482)
57 TIGR00763 lon ATP-dependent pr 99.8 4.1E-19 8.9E-24 191.7 18.9 221 142-380 321-584 (775)
58 PRK14956 DNA polymerase III su 99.8 1.2E-18 2.6E-23 175.1 20.1 207 131-379 8-243 (484)
59 PRK12402 replication factor C 99.8 4.1E-18 8.9E-23 167.1 22.3 214 129-380 3-247 (337)
60 PRK11034 clpA ATP-dependent Cl 99.8 9.3E-19 2E-23 186.5 18.8 223 135-382 180-433 (758)
61 PRK07003 DNA polymerase III su 99.8 2.2E-18 4.9E-23 179.3 20.7 204 132-377 7-239 (830)
62 COG3829 RocR Transcriptional r 99.8 1.4E-19 3E-24 180.7 11.0 218 134-376 238-491 (560)
63 PRK14962 DNA polymerase III su 99.8 2.5E-18 5.5E-23 174.9 19.7 207 133-381 6-241 (472)
64 PLN03025 replication factor C 99.8 3.4E-18 7.5E-23 166.8 19.7 204 130-377 2-218 (319)
65 PRK12323 DNA polymerase III su 99.8 1.3E-18 2.9E-23 178.9 17.1 204 132-377 7-244 (700)
66 PRK13342 recombination factor 99.8 6.3E-18 1.4E-22 170.5 21.0 205 132-383 3-220 (413)
67 PRK14961 DNA polymerase III su 99.8 6.8E-18 1.5E-22 167.4 20.2 207 132-380 7-242 (363)
68 PRK14960 DNA polymerase III su 99.8 6E-18 1.3E-22 174.5 20.1 206 132-379 6-240 (702)
69 PRK07994 DNA polymerase III su 99.8 7.8E-18 1.7E-22 175.5 20.8 207 132-380 7-242 (647)
70 PRK14958 DNA polymerase III su 99.8 3.9E-18 8.5E-23 175.1 18.2 209 131-381 6-243 (509)
71 PHA02544 44 clamp loader, smal 99.8 1.4E-17 2.9E-22 162.3 20.4 211 128-378 8-227 (316)
72 TIGR02928 orc1/cdc6 family rep 99.8 1.6E-17 3.6E-22 164.8 21.2 223 138-383 12-275 (365)
73 PRK14949 DNA polymerase III su 99.8 1.5E-17 3.2E-22 176.3 21.0 196 132-359 7-225 (944)
74 COG3604 FhlA Transcriptional r 99.8 4.4E-19 9.6E-24 174.9 8.8 216 137-375 219-465 (550)
75 PRK06645 DNA polymerase III su 99.8 2.4E-17 5.3E-22 168.4 20.4 218 131-381 11-255 (507)
76 TIGR03345 VI_ClpV1 type VI sec 99.8 2.8E-17 6.1E-22 178.1 21.1 223 134-382 180-431 (852)
77 PRK00411 cdc6 cell division co 99.8 4.6E-17 1E-21 163.3 20.5 224 138-383 27-283 (394)
78 TIGR00362 DnaA chromosomal rep 99.8 9.8E-17 2.1E-21 161.6 22.2 219 135-383 104-338 (405)
79 PRK08691 DNA polymerase III su 99.8 3.9E-17 8.5E-22 169.8 19.7 208 132-381 7-243 (709)
80 PRK14964 DNA polymerase III su 99.7 4.9E-17 1.1E-21 165.1 19.0 205 133-379 5-238 (491)
81 PTZ00112 origin recognition co 99.7 9E-17 2E-21 168.1 21.2 221 136-383 750-1007(1164)
82 PRK00149 dnaA chromosomal repl 99.7 8.6E-17 1.9E-21 164.1 20.5 222 133-383 114-350 (450)
83 PRK14963 DNA polymerase III su 99.7 1.3E-16 2.9E-21 163.6 21.4 204 133-379 6-237 (504)
84 PRK14957 DNA polymerase III su 99.7 1.1E-16 2.5E-21 164.5 20.8 206 132-379 7-241 (546)
85 KOG0989 Replication factor C, 99.7 3.4E-17 7.3E-22 152.9 15.2 195 129-362 24-235 (346)
86 PRK14951 DNA polymerase III su 99.7 6.8E-17 1.5E-21 168.2 19.3 207 131-379 6-246 (618)
87 KOG2028 ATPase related to the 99.7 3.8E-17 8.2E-22 155.3 15.5 210 132-382 129-368 (554)
88 PRK06893 DNA replication initi 99.7 2E-16 4.3E-21 147.2 20.2 214 132-380 7-228 (229)
89 PRK13341 recombination factor 99.7 1E-16 2.2E-21 170.2 19.7 210 131-382 18-247 (725)
90 COG0466 Lon ATP-dependent Lon 99.7 6.1E-17 1.3E-21 165.7 17.0 229 141-387 323-589 (782)
91 TIGR03420 DnaA_homol_Hda DnaA 99.7 2.5E-16 5.4E-21 145.8 19.8 205 135-379 9-225 (226)
92 PRK07764 DNA polymerase III su 99.7 1.5E-16 3.2E-21 170.9 20.7 206 131-377 5-241 (824)
93 PRK05563 DNA polymerase III su 99.7 2.5E-16 5.4E-21 163.8 21.8 204 133-378 8-240 (559)
94 PRK14086 dnaA chromosomal repl 99.7 2.4E-16 5.2E-21 162.5 21.3 223 133-384 280-517 (617)
95 PRK14952 DNA polymerase III su 99.7 2.4E-16 5.3E-21 163.5 21.1 205 133-378 5-240 (584)
96 PRK05896 DNA polymerase III su 99.7 1.2E-16 2.6E-21 164.6 18.7 207 130-378 5-240 (605)
97 PRK00440 rfc replication facto 99.7 2.5E-16 5.5E-21 153.2 20.0 209 128-380 4-224 (319)
98 PRK14959 DNA polymerase III su 99.7 1.5E-16 3.3E-21 164.7 19.3 207 131-379 6-241 (624)
99 PRK08727 hypothetical protein; 99.7 6.2E-16 1.3E-20 144.2 21.7 210 132-381 10-230 (233)
100 PRK08084 DNA replication initi 99.7 5.4E-16 1.2E-20 144.8 21.3 209 133-380 14-234 (235)
101 PRK14969 DNA polymerase III su 99.7 1.2E-16 2.7E-21 165.0 18.3 207 132-380 7-242 (527)
102 TIGR02397 dnaX_nterm DNA polym 99.7 2.5E-16 5.3E-21 155.7 19.4 208 131-380 4-240 (355)
103 PRK08903 DnaA regulatory inact 99.7 7E-16 1.5E-20 143.2 20.7 203 134-380 11-224 (227)
104 PRK10865 protein disaggregatio 99.7 1.2E-16 2.5E-21 173.8 16.9 170 134-329 171-358 (857)
105 PRK07940 DNA polymerase III su 99.7 2.4E-16 5.2E-21 157.0 17.3 183 139-352 3-212 (394)
106 PRK14965 DNA polymerase III su 99.7 3.4E-16 7.4E-21 163.5 18.5 204 133-378 8-240 (576)
107 CHL00095 clpC Clp protease ATP 99.7 3E-16 6.5E-21 170.6 18.7 203 135-363 173-402 (821)
108 PRK14970 DNA polymerase III su 99.7 7E-16 1.5E-20 153.4 19.6 214 131-380 7-231 (367)
109 PRK06305 DNA polymerase III su 99.7 7.5E-16 1.6E-20 156.5 20.2 206 132-379 8-243 (451)
110 PRK07133 DNA polymerase III su 99.7 7.1E-16 1.5E-20 161.9 20.5 212 131-378 8-239 (725)
111 TIGR03346 chaperone_ClpB ATP-d 99.7 3.5E-16 7.5E-21 170.6 18.9 204 133-362 165-396 (852)
112 PRK14088 dnaA chromosomal repl 99.7 7.7E-16 1.7E-20 156.1 18.9 221 134-383 98-333 (440)
113 KOG2004 Mitochondrial ATP-depe 99.7 1.5E-16 3.1E-21 162.2 13.4 167 141-325 411-596 (906)
114 PRK14953 DNA polymerase III su 99.7 1.1E-15 2.3E-20 156.3 19.9 213 131-379 6-241 (486)
115 PRK08451 DNA polymerase III su 99.7 1.6E-15 3.4E-20 155.4 20.8 205 132-378 5-238 (535)
116 TIGR02640 gas_vesic_GvpN gas v 99.7 1.2E-15 2.5E-20 144.9 18.2 190 174-384 20-259 (262)
117 COG0542 clpA ATP-binding subun 99.7 2.2E-17 4.8E-22 173.0 7.0 164 143-327 493-707 (786)
118 PRK12422 chromosomal replicati 99.7 2.4E-15 5.1E-20 152.4 20.9 227 134-384 104-345 (445)
119 PRK14955 DNA polymerase III su 99.7 7.9E-16 1.7E-20 154.4 17.2 216 132-379 7-254 (397)
120 PRK10787 DNA-binding ATP-depen 99.7 1.1E-15 2.4E-20 164.2 18.4 222 142-382 323-582 (784)
121 PRK06647 DNA polymerase III su 99.7 2.1E-15 4.5E-20 156.6 19.8 205 133-379 8-241 (563)
122 PRK09111 DNA polymerase III su 99.7 3.3E-15 7.2E-20 155.8 21.3 214 131-380 14-255 (598)
123 PRK05642 DNA replication initi 99.7 1.1E-14 2.4E-19 135.9 22.0 180 175-380 45-233 (234)
124 PRK11034 clpA ATP-dependent Cl 99.7 1.1E-15 2.3E-20 163.2 16.9 163 143-326 460-667 (758)
125 PRK14087 dnaA chromosomal repl 99.7 5.2E-15 1.1E-19 150.3 21.1 217 137-382 111-348 (450)
126 COG1474 CDC6 Cdc6-related prot 99.7 8.2E-15 1.8E-19 144.7 20.3 217 141-382 17-265 (366)
127 TIGR02903 spore_lon_C ATP-depe 99.7 7.7E-15 1.7E-19 154.4 21.3 220 134-382 147-430 (615)
128 TIGR02974 phageshock_pspF psp 99.7 8.2E-16 1.8E-20 150.3 13.1 204 143-374 1-242 (329)
129 TIGR01817 nifA Nif-specific re 99.7 5E-16 1.1E-20 161.8 11.5 213 136-376 191-439 (534)
130 PRK14954 DNA polymerase III su 99.6 7.9E-15 1.7E-19 153.2 20.3 215 133-379 8-254 (620)
131 PRK05342 clpX ATP-dependent pr 99.6 5.7E-15 1.2E-19 147.8 18.3 220 143-364 73-380 (412)
132 COG1224 TIP49 DNA helicase TIP 99.6 1E-14 2.2E-19 138.6 18.9 130 235-384 292-434 (450)
133 PRK11388 DNA-binding transcrip 99.6 2E-15 4.4E-20 160.4 15.7 217 136-380 320-569 (638)
134 PRK11608 pspF phage shock prot 99.6 1.5E-15 3.3E-20 148.4 12.8 207 140-374 5-249 (326)
135 PRK14950 DNA polymerase III su 99.6 1.1E-14 2.5E-19 152.7 20.0 206 132-379 7-242 (585)
136 PRK10820 DNA-binding transcrip 99.6 2.9E-15 6.2E-20 155.2 15.1 216 135-375 198-447 (520)
137 PRK14948 DNA polymerase III su 99.6 1.7E-14 3.6E-19 151.5 20.9 188 132-357 7-225 (620)
138 PF00308 Bac_DnaA: Bacterial d 99.6 1.1E-14 2.3E-19 134.5 17.2 200 135-362 2-216 (219)
139 TIGR02639 ClpA ATP-dependent C 99.6 5.4E-15 1.2E-19 159.0 17.3 200 142-362 455-711 (731)
140 TIGR00390 hslU ATP-dependent p 99.6 9.7E-15 2.1E-19 144.0 17.2 241 143-385 14-433 (441)
141 PRK13407 bchI magnesium chelat 99.6 5.3E-15 1.2E-19 144.1 14.1 223 135-384 2-308 (334)
142 PRK06620 hypothetical protein; 99.6 3.1E-14 6.7E-19 130.9 18.3 197 133-379 8-213 (214)
143 PF05673 DUF815: Protein of un 99.6 2.5E-14 5.5E-19 131.5 17.5 195 132-355 18-242 (249)
144 TIGR02329 propionate_PrpR prop 99.6 2.6E-15 5.6E-20 154.7 12.1 217 137-378 208-466 (526)
145 COG1221 PspF Transcriptional r 99.6 1.5E-15 3.3E-20 149.4 9.2 208 136-371 73-315 (403)
146 CHL00081 chlI Mg-protoporyphyr 99.6 1.1E-14 2.4E-19 142.2 15.1 225 135-385 11-325 (350)
147 PRK14971 DNA polymerase III su 99.6 3.5E-14 7.6E-19 149.0 19.9 206 132-379 8-243 (614)
148 PRK15424 propionate catabolism 99.6 2.7E-15 5.9E-20 154.5 11.0 212 138-376 216-479 (538)
149 PRK05201 hslU ATP-dependent pr 99.6 1.2E-14 2.6E-19 143.5 14.7 241 143-385 17-435 (443)
150 CHL00095 clpC Clp protease ATP 99.6 3E-15 6.5E-20 162.8 11.6 198 142-360 510-779 (821)
151 COG2812 DnaX DNA polymerase II 99.6 8.6E-15 1.9E-19 148.5 14.0 210 133-378 8-240 (515)
152 COG0593 DnaA ATPase involved i 99.6 7.1E-14 1.5E-18 138.1 19.8 225 132-386 78-317 (408)
153 TIGR00382 clpX endopeptidase C 99.6 2.8E-14 6.1E-19 142.3 17.0 221 143-365 79-387 (413)
154 PRK05022 anaerobic nitric oxid 99.6 7.1E-15 1.5E-19 152.1 13.0 213 139-376 185-437 (509)
155 TIGR02915 PEP_resp_reg putativ 99.6 1.5E-15 3.3E-20 154.7 7.7 282 44-376 61-383 (445)
156 PRK15429 formate hydrogenlyase 99.6 1.9E-14 4.2E-19 154.1 15.0 210 137-371 372-615 (686)
157 TIGR02030 BchI-ChlI magnesium 99.6 4.1E-14 8.8E-19 138.2 15.3 219 139-385 2-312 (337)
158 PRK09087 hypothetical protein; 99.6 2.6E-13 5.5E-18 125.9 18.9 172 176-382 45-222 (226)
159 TIGR03346 chaperone_ClpB ATP-d 99.6 1.4E-13 2.9E-18 150.4 19.2 201 141-362 565-825 (852)
160 PRK10865 protein disaggregatio 99.6 1.7E-13 3.6E-18 149.3 19.8 200 140-360 567-826 (857)
161 cd00009 AAA The AAA+ (ATPases 99.6 1.2E-13 2.5E-18 117.3 14.6 140 145-310 2-150 (151)
162 COG3283 TyrR Transcriptional r 99.6 2E-14 4.2E-19 136.7 10.4 218 133-375 196-442 (511)
163 TIGR02442 Cob-chelat-sub cobal 99.5 1.1E-13 2.3E-18 146.5 16.0 221 139-385 2-307 (633)
164 PRK11361 acetoacetate metaboli 99.5 6E-14 1.3E-18 143.4 12.9 210 139-379 141-390 (457)
165 TIGR03345 VI_ClpV1 type VI sec 99.5 3.5E-13 7.5E-18 146.5 19.1 197 142-360 567-828 (852)
166 TIGR01650 PD_CobS cobaltochela 99.5 6.1E-14 1.3E-18 135.1 10.4 140 174-327 63-235 (327)
167 TIGR00764 lon_rel lon-related 99.5 5.4E-13 1.2E-17 140.1 18.3 135 236-383 219-392 (608)
168 PRK13531 regulatory ATPase Rav 99.5 1.1E-12 2.4E-17 131.9 19.8 212 143-383 22-284 (498)
169 PRK09112 DNA polymerase III su 99.5 1.2E-12 2.5E-17 128.9 19.5 188 135-355 17-241 (351)
170 PRK10923 glnG nitrogen regulat 99.5 3.4E-14 7.4E-19 145.8 8.4 210 139-379 136-385 (469)
171 PHA02244 ATPase-like protein 99.5 1E-12 2.2E-17 128.1 17.8 127 174-316 118-265 (383)
172 PRK07471 DNA polymerase III su 99.5 1.1E-12 2.5E-17 129.6 18.2 178 135-346 13-231 (365)
173 KOG1969 DNA replication checkp 99.5 1.9E-12 4.2E-17 132.8 19.5 216 128-367 258-520 (877)
174 COG0714 MoxR-like ATPases [Gen 99.5 2E-12 4.3E-17 126.8 18.5 209 143-383 26-297 (329)
175 smart00350 MCM minichromosome 99.5 2E-12 4.4E-17 133.7 17.3 196 175-385 236-507 (509)
176 KOG0991 Replication factor C, 99.4 7.1E-13 1.5E-17 119.7 11.7 188 129-358 15-215 (333)
177 TIGR03015 pepcterm_ATPase puta 99.4 7.9E-12 1.7E-16 118.7 18.9 193 175-383 43-267 (269)
178 COG0542 clpA ATP-binding subun 99.4 4.4E-12 9.5E-17 133.6 18.6 205 135-364 164-395 (786)
179 TIGR00368 Mg chelatase-related 99.4 3.2E-12 7E-17 131.0 17.2 213 137-380 188-497 (499)
180 PRK05564 DNA polymerase III su 99.4 3.3E-12 7.2E-17 124.4 16.5 170 139-346 2-183 (313)
181 PF00158 Sigma54_activat: Sigm 99.4 2E-12 4.2E-17 114.5 13.3 123 143-290 1-144 (168)
182 PF06068 TIP49: TIP49 C-termin 99.4 1.9E-12 4.2E-17 125.1 13.4 103 235-357 279-394 (398)
183 KOG1942 DNA helicase, TBP-inte 99.4 9.9E-12 2.1E-16 115.7 17.6 131 234-384 296-440 (456)
184 TIGR00602 rad24 checkpoint pro 99.4 5.5E-12 1.2E-16 132.0 17.8 209 128-363 71-329 (637)
185 PRK07399 DNA polymerase III su 99.4 6E-12 1.3E-16 122.2 16.2 183 139-356 2-223 (314)
186 COG0470 HolB ATPase involved i 99.4 6.7E-12 1.4E-16 122.2 15.7 149 142-322 2-178 (325)
187 TIGR02031 BchD-ChlD magnesium 99.4 1.1E-11 2.4E-16 130.0 17.6 196 176-384 17-260 (589)
188 TIGR00678 holB DNA polymerase 99.4 9E-12 2E-16 112.3 14.6 144 173-345 12-183 (188)
189 KOG2680 DNA helicase TIP49, TB 99.4 2.6E-11 5.6E-16 113.2 16.7 132 235-386 289-433 (454)
190 PRK15115 response regulator Gl 99.4 1.8E-11 3.9E-16 124.8 17.2 207 142-379 135-381 (444)
191 COG2607 Predicted ATPase (AAA+ 99.4 6.3E-11 1.4E-15 107.7 18.6 168 133-331 52-245 (287)
192 TIGR01818 ntrC nitrogen regula 99.4 2.7E-12 5.8E-17 131.5 11.1 215 141-380 134-382 (463)
193 PRK04132 replication factor C 99.4 2.4E-11 5.3E-16 130.3 18.5 146 175-345 564-723 (846)
194 PF05621 TniB: Bacterial TniB 99.4 4.6E-11 9.9E-16 113.4 17.7 211 143-378 36-285 (302)
195 PF07728 AAA_5: AAA domain (dy 99.3 1.2E-12 2.6E-17 112.0 5.0 112 177-303 1-139 (139)
196 PRK05707 DNA polymerase III su 99.3 3.5E-11 7.6E-16 117.5 15.8 151 173-348 20-198 (328)
197 PRK13765 ATP-dependent proteas 99.3 3.9E-11 8.4E-16 126.0 15.9 134 235-381 227-399 (637)
198 PRK08058 DNA polymerase III su 99.3 2.3E-11 5.1E-16 119.1 13.1 149 139-323 3-180 (329)
199 smart00382 AAA ATPases associa 99.3 2.6E-11 5.7E-16 101.6 11.7 126 175-312 2-147 (148)
200 PF07724 AAA_2: AAA domain (Cd 99.3 9.5E-12 2.1E-16 110.4 8.4 115 174-290 2-130 (171)
201 COG3284 AcoR Transcriptional a 99.3 2.7E-12 5.9E-17 130.8 5.6 192 174-379 335-554 (606)
202 PRK11331 5-methylcytosine-spec 99.3 4.4E-11 9.5E-16 119.6 13.7 144 140-311 174-357 (459)
203 PRK10365 transcriptional regul 99.3 1.2E-11 2.5E-16 126.0 9.8 210 142-379 140-386 (441)
204 PF01078 Mg_chelatase: Magnesi 99.3 9E-12 1.9E-16 112.4 6.7 45 140-199 2-46 (206)
205 PRK09862 putative ATP-dependen 99.3 1.6E-10 3.4E-15 118.2 16.4 214 138-382 188-492 (506)
206 PTZ00111 DNA replication licen 99.2 3.3E-10 7.1E-15 121.3 18.3 201 173-387 490-809 (915)
207 smart00763 AAA_PrkA PrkA AAA d 99.2 2.3E-10 5E-15 111.6 14.6 166 140-327 49-329 (361)
208 PF13177 DNA_pol3_delta2: DNA 99.2 1.6E-10 3.4E-15 101.8 11.4 134 145-312 1-161 (162)
209 PRK06871 DNA polymerase III su 99.2 7.9E-10 1.7E-14 107.4 17.0 144 146-324 7-178 (325)
210 PRK08116 hypothetical protein; 99.2 2.3E-10 5E-15 108.9 12.9 123 175-314 114-251 (268)
211 PF14532 Sigma54_activ_2: Sigm 99.2 2.1E-11 4.5E-16 104.4 5.0 106 144-289 1-109 (138)
212 KOG2035 Replication factor C, 99.2 1.2E-09 2.7E-14 101.2 16.7 185 129-345 1-220 (351)
213 COG1220 HslU ATP-dependent pro 99.2 1.4E-10 3.1E-15 110.0 10.6 86 235-322 251-346 (444)
214 COG1239 ChlI Mg-chelatase subu 99.2 8.5E-10 1.9E-14 108.2 16.3 219 137-384 13-324 (423)
215 KOG1514 Origin recognition com 99.2 9.3E-10 2E-14 113.2 17.1 194 176-384 423-657 (767)
216 PF07726 AAA_3: ATPase family 99.2 9.2E-12 2E-16 103.6 1.5 107 177-303 1-129 (131)
217 KOG2227 Pre-initiation complex 99.2 8.9E-10 1.9E-14 108.7 15.5 222 141-385 150-418 (529)
218 PF03215 Rad17: Rad17 cell cyc 99.1 2.1E-09 4.6E-14 110.7 18.2 212 127-363 5-269 (519)
219 PRK08769 DNA polymerase III su 99.1 1.5E-09 3.2E-14 105.4 15.8 167 146-348 9-203 (319)
220 PRK06964 DNA polymerase III su 99.1 5.5E-10 1.2E-14 109.3 12.8 133 173-324 19-203 (342)
221 PRK07993 DNA polymerase III su 99.1 1.2E-09 2.6E-14 107.0 14.7 165 146-348 7-199 (334)
222 KOG0745 Putative ATP-dependent 99.1 2.2E-09 4.8E-14 104.9 16.0 96 176-271 227-331 (564)
223 PRK12377 putative replication 99.1 8.2E-10 1.8E-14 103.6 12.5 101 175-290 101-206 (248)
224 KOG1051 Chaperone HSP104 and r 99.1 7.9E-10 1.7E-14 118.2 13.0 129 142-289 563-710 (898)
225 KOG0990 Replication factor C, 99.1 5.2E-10 1.1E-14 105.7 10.1 170 125-329 25-207 (360)
226 PRK08181 transposase; Validate 99.1 1.9E-09 4.2E-14 102.3 13.5 101 174-290 105-209 (269)
227 PRK06090 DNA polymerase III su 99.1 5.5E-09 1.2E-13 101.4 16.6 144 146-323 8-178 (319)
228 COG1219 ClpX ATP-dependent pro 99.0 7.5E-10 1.6E-14 104.4 8.8 126 143-271 63-202 (408)
229 PRK07952 DNA replication prote 99.0 2.4E-09 5.3E-14 100.1 12.1 100 176-290 100-205 (244)
230 PRK06835 DNA replication prote 99.0 2.2E-09 4.8E-14 104.7 12.0 124 175-315 183-320 (329)
231 PF13173 AAA_14: AAA domain 99.0 9.1E-09 2E-13 86.8 12.0 118 176-316 3-126 (128)
232 KOG0741 AAA+-type ATPase [Post 98.9 6.3E-09 1.4E-13 103.9 11.8 141 175-322 538-683 (744)
233 PRK08699 DNA polymerase III su 98.9 5.6E-09 1.2E-13 101.9 11.4 131 173-323 19-183 (325)
234 PF01637 Arch_ATPase: Archaeal 98.9 1.8E-08 4E-13 92.7 13.1 183 144-352 2-232 (234)
235 COG0606 Predicted ATPase with 98.9 1.1E-09 2.3E-14 109.0 5.0 212 137-381 175-484 (490)
236 PRK06526 transposase; Provisio 98.9 5.4E-09 1.2E-13 98.6 9.0 101 174-290 97-201 (254)
237 PRK13406 bchD magnesium chelat 98.9 2.4E-08 5.2E-13 104.3 14.6 196 176-385 26-253 (584)
238 PRK06921 hypothetical protein; 98.9 1.8E-08 3.9E-13 95.7 11.9 105 174-290 116-225 (266)
239 COG4650 RtcR Sigma54-dependent 98.9 5.6E-09 1.2E-13 97.6 7.9 204 171-385 204-446 (531)
240 PRK08939 primosomal protein Dn 98.9 2.3E-08 4.9E-13 96.9 12.2 102 174-290 155-261 (306)
241 COG1484 DnaC DNA replication p 98.9 2.9E-08 6.3E-13 93.7 12.3 101 174-290 104-209 (254)
242 PF01695 IstB_IS21: IstB-like 98.8 5.6E-09 1.2E-13 93.3 6.5 102 173-290 45-150 (178)
243 PRK09183 transposase/IS protei 98.8 1.7E-08 3.8E-13 95.6 10.2 103 173-290 100-206 (259)
244 KOG1970 Checkpoint RAD17-RFC c 98.8 2.3E-07 4.9E-12 93.5 17.9 221 123-362 64-320 (634)
245 PF03969 AFG1_ATPase: AFG1-lik 98.8 1.9E-08 4.2E-13 99.4 10.0 106 172-293 59-172 (362)
246 COG1241 MCM2 Predicted ATPase 98.8 5.5E-08 1.2E-12 102.0 13.0 194 176-386 320-596 (682)
247 PRK05917 DNA polymerase III su 98.8 1E-07 2.2E-12 91.0 12.7 134 148-312 4-154 (290)
248 KOG0478 DNA replication licens 98.7 2.7E-07 5.9E-12 94.9 15.9 195 175-385 462-727 (804)
249 KOG0480 DNA replication licens 98.7 4.4E-07 9.6E-12 92.7 17.0 229 141-386 345-647 (764)
250 COG3267 ExeA Type II secretory 98.6 3.5E-06 7.6E-11 77.9 18.8 184 177-376 53-267 (269)
251 PF00493 MCM: MCM2/3/5 family 98.6 9.6E-08 2.1E-12 93.7 9.2 190 174-385 56-329 (331)
252 PRK07276 DNA polymerase III su 98.6 1.1E-06 2.4E-11 84.1 16.0 144 145-322 6-172 (290)
253 PF12774 AAA_6: Hydrolytic ATP 98.6 5.7E-07 1.2E-11 83.6 12.9 126 175-321 32-176 (231)
254 PF13401 AAA_22: AAA domain; P 98.6 1.6E-07 3.5E-12 78.8 8.4 72 175-246 4-99 (131)
255 PRK07132 DNA polymerase III su 98.6 5E-06 1.1E-10 80.2 18.2 140 148-323 3-160 (299)
256 PRK05818 DNA polymerase III su 98.6 1.7E-06 3.8E-11 81.0 14.4 121 173-312 5-147 (261)
257 PF12775 AAA_7: P-loop contain 98.5 2.4E-07 5.1E-12 88.4 8.2 139 174-327 32-195 (272)
258 PF05729 NACHT: NACHT domain 98.5 2.2E-06 4.8E-11 74.5 13.3 140 177-327 2-165 (166)
259 cd01120 RecA-like_NTPases RecA 98.5 7.5E-07 1.6E-11 77.0 9.8 110 178-291 2-138 (165)
260 PLN03210 Resistant to P. syrin 98.5 6.8E-06 1.5E-10 93.4 19.6 178 136-348 179-390 (1153)
261 PF00931 NB-ARC: NB-ARC domain 98.5 1.3E-05 2.9E-10 76.5 18.8 168 147-348 2-197 (287)
262 PF13191 AAA_16: AAA ATPase do 98.4 4.5E-07 9.8E-12 80.6 6.7 59 143-211 2-63 (185)
263 KOG2170 ATPase of the AAA+ sup 98.4 8.6E-06 1.9E-10 76.9 14.6 126 143-289 84-224 (344)
264 COG1485 Predicted ATPase [Gene 98.4 2.1E-06 4.5E-11 82.9 10.7 105 172-293 62-175 (367)
265 PF14516 AAA_35: AAA-like doma 98.4 4.3E-05 9.4E-10 75.1 20.4 188 144-358 14-243 (331)
266 KOG1968 Replication factor C, 98.4 1.4E-06 3.1E-11 94.2 10.7 212 129-361 308-535 (871)
267 TIGR02237 recomb_radB DNA repa 98.4 1.9E-06 4.2E-11 78.7 9.4 115 171-288 8-148 (209)
268 KOG0482 DNA replication licens 98.3 6.3E-06 1.4E-10 82.4 12.0 225 142-385 343-641 (721)
269 PRK11823 DNA repair protein Ra 98.3 5.9E-06 1.3E-10 84.2 12.0 80 171-250 76-172 (446)
270 KOG2383 Predicted ATPase [Gene 98.3 5.6E-06 1.2E-10 80.9 10.5 188 143-360 83-298 (467)
271 COG1373 Predicted ATPase (AAA+ 98.3 7.4E-05 1.6E-09 75.2 19.0 126 173-319 36-161 (398)
272 TIGR02688 conserved hypothetic 98.3 1.6E-05 3.4E-10 79.3 13.5 193 173-386 207-437 (449)
273 cd01121 Sms Sms (bacterial rad 98.3 8.1E-06 1.8E-10 81.2 11.6 80 171-250 78-174 (372)
274 PF00910 RNA_helicase: RNA hel 98.2 3.3E-06 7.2E-11 68.9 7.0 23 178-200 1-23 (107)
275 cd01124 KaiC KaiC is a circadi 98.2 1.9E-05 4.2E-10 70.4 12.2 102 178-290 2-140 (187)
276 KOG0481 DNA replication licens 98.2 1E-05 2.2E-10 81.1 11.0 195 175-385 364-642 (729)
277 PRK09361 radB DNA repair and r 98.2 1E-05 2.2E-10 74.9 9.9 117 171-289 19-161 (225)
278 KOG2543 Origin recognition com 98.2 4.4E-05 9.6E-10 74.3 14.0 159 142-324 7-192 (438)
279 COG1618 Predicted nucleotide k 98.1 2.8E-05 6E-10 67.2 11.0 26 174-199 4-29 (179)
280 KOG1051 Chaperone HSP104 and r 98.1 2.6E-05 5.7E-10 84.1 13.4 161 141-327 186-365 (898)
281 KOG2228 Origin recognition com 98.1 1.2E-05 2.5E-10 77.1 9.5 161 142-325 25-219 (408)
282 COG5271 MDN1 AAA ATPase contai 98.1 1.2E-05 2.7E-10 89.3 10.3 136 175-326 1543-1704(4600)
283 TIGR02012 tigrfam_recA protein 98.1 1.5E-05 3.2E-10 77.5 9.6 118 171-288 51-190 (321)
284 cd00983 recA RecA is a bacter 98.1 1.6E-05 3.4E-10 77.4 9.7 118 171-288 51-190 (325)
285 cd01394 radB RadB. The archaea 98.1 3.9E-05 8.5E-10 70.5 11.9 117 171-289 15-157 (218)
286 PRK08533 flagellar accessory p 98.1 4.4E-05 9.5E-10 71.1 12.2 110 171-290 20-163 (230)
287 KOG0477 DNA replication licens 98.1 2.3E-05 5E-10 80.2 10.5 193 176-385 483-760 (854)
288 TIGR01618 phage_P_loop phage n 98.1 1.1E-05 2.4E-10 74.3 7.3 98 175-274 12-131 (220)
289 PRK06067 flagellar accessory p 98.0 7.9E-05 1.7E-09 69.4 12.1 76 171-246 21-132 (234)
290 TIGR00416 sms DNA repair prote 98.0 7.7E-05 1.7E-09 76.3 12.6 79 171-249 90-185 (454)
291 PRK09376 rho transcription ter 98.0 4.6E-05 9.9E-10 75.4 10.2 113 175-287 169-317 (416)
292 PRK06581 DNA polymerase III su 98.0 0.00013 2.8E-09 67.5 12.5 136 175-329 15-165 (263)
293 PF07693 KAP_NTPase: KAP famil 97.9 0.00068 1.5E-08 66.0 18.1 81 233-328 171-266 (325)
294 cd03283 ABC_MutS-like MutS-lik 97.9 6.2E-05 1.4E-09 68.5 10.1 105 172-291 22-149 (199)
295 cd03216 ABC_Carb_Monos_I This 97.9 9.2E-05 2E-09 65.1 10.4 107 171-291 22-143 (163)
296 COG1116 TauB ABC-type nitrate/ 97.9 3E-05 6.4E-10 71.8 7.4 27 172-198 26-52 (248)
297 PF13207 AAA_17: AAA domain; P 97.9 9.3E-06 2E-10 67.2 3.7 30 178-207 2-31 (121)
298 PHA00729 NTP-binding motif con 97.9 1.5E-05 3.2E-10 73.4 5.2 25 176-200 18-42 (226)
299 cd01128 rho_factor Transcripti 97.9 0.00018 4E-09 67.6 12.3 114 174-287 15-164 (249)
300 PRK15455 PrkA family serine pr 97.9 2.1E-05 4.5E-10 81.1 6.0 63 139-208 74-137 (644)
301 TIGR03877 thermo_KaiC_1 KaiC d 97.9 0.0002 4.4E-09 66.9 12.2 39 171-209 17-58 (237)
302 PRK09354 recA recombinase A; P 97.8 7.9E-05 1.7E-09 73.1 9.5 78 171-248 56-152 (349)
303 cd01393 recA_like RecA is a b 97.8 9.6E-05 2.1E-09 68.2 9.7 117 171-288 15-167 (226)
304 PRK04296 thymidine kinase; Pro 97.8 0.00014 3.1E-09 65.6 10.2 69 177-246 4-90 (190)
305 PRK08118 topology modulation p 97.8 4E-05 8.6E-10 67.8 6.5 32 177-208 3-34 (167)
306 cd01123 Rad51_DMC1_radA Rad51_ 97.8 7.1E-05 1.5E-09 69.5 8.5 117 171-288 15-168 (235)
307 TIGR02858 spore_III_AA stage I 97.8 4.4E-05 9.6E-10 72.6 7.0 68 176-243 112-203 (270)
308 cd03238 ABC_UvrA The excision 97.8 0.00017 3.7E-09 64.3 9.9 120 171-311 17-163 (176)
309 PRK00131 aroK shikimate kinase 97.8 2.5E-05 5.4E-10 68.7 4.4 34 173-206 2-35 (175)
310 COG1126 GlnQ ABC-type polar am 97.8 7.9E-05 1.7E-09 67.5 7.5 50 226-289 146-195 (240)
311 COG4178 ABC-type uncharacteriz 97.8 5.3E-05 1.2E-09 78.7 7.0 106 171-291 415-575 (604)
312 PRK07261 topology modulation p 97.7 6.5E-05 1.4E-09 66.7 6.6 32 177-208 2-33 (171)
313 PF05707 Zot: Zonular occluden 97.7 3E-05 6.6E-10 70.1 4.5 123 178-312 3-146 (193)
314 COG5271 MDN1 AAA ATPase contai 97.7 5E-05 1.1E-09 84.8 6.7 135 176-325 889-1047(4600)
315 cd03281 ABC_MSH5_euk MutS5 hom 97.7 0.00034 7.4E-09 64.3 11.4 109 176-294 30-158 (213)
316 COG1066 Sms Predicted ATP-depe 97.7 0.00053 1.1E-08 67.7 13.0 100 171-270 89-204 (456)
317 PRK04841 transcriptional regul 97.7 0.0011 2.3E-08 73.7 17.3 153 175-348 32-220 (903)
318 PF13671 AAA_33: AAA domain; P 97.7 0.0001 2.2E-09 62.7 7.3 35 178-214 2-36 (143)
319 PF03266 NTPase_1: NTPase; In 97.7 2.6E-05 5.7E-10 69.0 3.4 23 177-199 1-23 (168)
320 cd03222 ABC_RNaseL_inhibitor T 97.7 0.0004 8.7E-09 62.0 11.0 106 172-291 22-133 (177)
321 PF04665 Pox_A32: Poxvirus A32 97.7 0.0012 2.6E-08 61.5 14.4 133 173-324 11-169 (241)
322 PRK00771 signal recognition pa 97.7 0.00081 1.7E-08 68.3 14.3 194 173-384 93-334 (437)
323 PRK04040 adenylate kinase; Pro 97.7 0.00042 9E-09 62.5 10.9 29 175-203 2-32 (188)
324 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.7 0.00034 7.5E-09 60.1 9.8 102 171-291 22-128 (144)
325 cd01129 PulE-GspE PulE/GspE Th 97.7 0.00046 9.9E-09 65.6 11.3 94 138-245 57-160 (264)
326 PHA02774 E1; Provisional 97.7 0.00021 4.6E-09 73.8 9.5 38 171-208 430-468 (613)
327 PF13604 AAA_30: AAA domain; P 97.6 0.00013 2.7E-09 66.3 7.0 34 175-208 18-54 (196)
328 cd03247 ABCC_cytochrome_bd The 97.6 0.00053 1.1E-08 61.0 10.9 108 171-293 24-160 (178)
329 cd00267 ABC_ATPase ABC (ATP-bi 97.6 0.0005 1.1E-08 59.8 10.5 106 172-292 22-142 (157)
330 TIGR03878 thermo_KaiC_2 KaiC d 97.6 0.00045 9.9E-09 65.5 10.9 38 171-208 32-72 (259)
331 PF06745 KaiC: KaiC; InterPro 97.6 0.00019 4.1E-09 66.4 8.1 108 171-288 15-159 (226)
332 cd03280 ABC_MutS2 MutS2 homolo 97.6 0.00045 9.8E-09 62.8 10.4 24 173-196 25-49 (200)
333 PHA02624 large T antigen; Prov 97.6 0.00019 4.1E-09 74.4 8.7 123 171-311 427-561 (647)
334 cd03246 ABCC_Protease_Secretio 97.6 0.00059 1.3E-08 60.4 10.8 105 172-291 25-157 (173)
335 TIGR02782 TrbB_P P-type conjug 97.6 0.00027 5.9E-09 68.4 9.2 70 175-244 132-214 (299)
336 cd03228 ABCC_MRP_Like The MRP 97.6 0.00049 1.1E-08 60.8 10.1 107 171-293 24-158 (171)
337 COG1121 ZnuC ABC-type Mn/Zn tr 97.6 0.00021 4.6E-09 66.8 8.0 55 224-292 147-201 (254)
338 smart00534 MUTSac ATPase domai 97.6 0.00084 1.8E-08 60.3 11.7 100 178-290 2-122 (185)
339 cd00046 DEXDc DEAD-like helica 97.6 0.00045 9.7E-09 57.2 9.3 24 176-199 1-24 (144)
340 PRK06762 hypothetical protein; 97.6 0.0002 4.3E-09 62.8 7.4 39 175-213 2-40 (166)
341 cd01131 PilT Pilus retraction 97.6 0.0001 2.2E-09 66.9 5.7 67 177-243 3-83 (198)
342 cd03243 ABC_MutS_homologs The 97.6 0.00065 1.4E-08 61.8 11.0 24 174-197 28-51 (202)
343 TIGR03880 KaiC_arch_3 KaiC dom 97.6 0.00075 1.6E-08 62.3 11.5 110 171-289 12-153 (224)
344 TIGR01420 pilT_fam pilus retra 97.6 0.00012 2.7E-09 72.2 6.6 71 174-244 121-205 (343)
345 PRK10536 hypothetical protein; 97.6 0.00077 1.7E-08 63.3 11.4 43 141-198 55-97 (262)
346 PRK04328 hypothetical protein; 97.6 0.00094 2E-08 62.9 12.2 38 171-208 19-59 (249)
347 COG4619 ABC-type uncharacteriz 97.6 0.00049 1.1E-08 60.1 9.2 28 171-198 25-52 (223)
348 TIGR03881 KaiC_arch_4 KaiC dom 97.6 0.0012 2.6E-08 61.1 12.6 38 171-208 16-56 (229)
349 TIGR02238 recomb_DMC1 meiotic 97.6 0.00031 6.6E-09 68.4 9.0 116 171-287 92-243 (313)
350 cd03214 ABC_Iron-Siderophores_ 97.6 0.00045 9.6E-09 61.6 9.4 108 171-291 21-159 (180)
351 PF00437 T2SE: Type II/IV secr 97.6 8.4E-05 1.8E-09 70.7 4.9 101 134-245 97-208 (270)
352 cd03223 ABCD_peroxisomal_ALDP 97.6 0.00085 1.8E-08 59.1 10.9 103 171-291 23-149 (166)
353 PF06309 Torsin: Torsin; Inte 97.6 0.0001 2.2E-09 61.5 4.5 50 142-199 26-77 (127)
354 cd00544 CobU Adenosylcobinamid 97.6 0.00046 1E-08 61.1 9.1 107 178-290 2-126 (169)
355 cd01122 GP4d_helicase GP4d_hel 97.5 0.00036 7.8E-09 66.3 9.0 38 171-208 26-67 (271)
356 PLN03187 meiotic recombination 97.5 0.00036 7.8E-09 68.6 9.0 116 171-287 122-273 (344)
357 PRK13948 shikimate kinase; Pro 97.5 0.00034 7.4E-09 62.7 8.1 35 173-207 8-42 (182)
358 COG3854 SpoIIIAA ncharacterize 97.5 0.00063 1.4E-08 62.3 9.8 72 175-246 137-230 (308)
359 PRK12723 flagellar biosynthesi 97.5 0.001 2.2E-08 66.5 12.2 26 174-199 173-198 (388)
360 COG4608 AppF ABC-type oligopep 97.5 0.00037 8.1E-09 65.4 8.5 106 171-289 35-169 (268)
361 COG1124 DppF ABC-type dipeptid 97.5 0.00038 8.3E-09 64.2 8.4 49 229-290 154-202 (252)
362 PRK05973 replicative DNA helic 97.5 0.0017 3.8E-08 60.5 12.9 39 171-209 60-101 (237)
363 PRK09519 recA DNA recombinatio 97.5 0.00039 8.4E-09 74.8 9.7 117 171-287 56-194 (790)
364 cd00984 DnaB_C DnaB helicase C 97.5 0.00054 1.2E-08 63.9 9.7 38 171-208 9-50 (242)
365 PF05272 VirE: Virulence-assoc 97.5 0.00025 5.5E-09 64.4 7.2 111 171-311 48-169 (198)
366 PRK04301 radA DNA repair and r 97.5 0.0004 8.6E-09 67.8 9.0 117 171-288 98-251 (317)
367 PRK03839 putative kinase; Prov 97.5 8E-05 1.7E-09 66.4 3.8 31 177-207 2-32 (180)
368 PRK05800 cobU adenosylcobinami 97.5 0.00045 9.8E-09 61.2 8.5 106 177-289 3-125 (170)
369 cd03230 ABC_DR_subfamily_A Thi 97.5 0.00059 1.3E-08 60.4 9.3 106 172-291 23-156 (173)
370 cd03287 ABC_MSH3_euk MutS3 hom 97.5 0.00089 1.9E-08 62.0 10.7 105 173-291 29-155 (222)
371 PRK13947 shikimate kinase; Pro 97.5 9.5E-05 2E-09 65.2 4.0 31 177-207 3-33 (171)
372 TIGR00767 rho transcription te 97.5 0.00073 1.6E-08 67.3 10.5 115 173-287 166-316 (415)
373 cd03282 ABC_MSH4_euk MutS4 hom 97.5 0.0013 2.7E-08 60.1 11.3 24 174-197 28-51 (204)
374 PRK13695 putative NTPase; Prov 97.5 0.0014 3.1E-08 58.0 11.5 23 177-199 2-24 (174)
375 COG0703 AroK Shikimate kinase 97.5 0.00028 6.1E-09 62.1 6.4 32 176-207 3-34 (172)
376 PRK00625 shikimate kinase; Pro 97.5 0.00011 2.5E-09 65.2 4.0 31 177-207 2-32 (173)
377 KOG0479 DNA replication licens 97.5 0.0033 7.2E-08 64.4 14.6 149 143-309 303-481 (818)
378 COG2884 FtsE Predicted ATPase 97.5 0.00023 5E-09 63.3 5.7 50 230-293 151-200 (223)
379 TIGR02236 recomb_radA DNA repa 97.5 0.00054 1.2E-08 66.6 9.0 117 171-288 91-245 (310)
380 PTZ00035 Rad51 protein; Provis 97.4 0.00075 1.6E-08 66.4 10.0 116 171-287 114-265 (337)
381 cd00464 SK Shikimate kinase (S 97.4 0.00013 2.7E-09 63.0 4.0 31 177-207 1-31 (154)
382 PF00448 SRP54: SRP54-type pro 97.4 0.001 2.2E-08 60.4 10.0 101 175-288 1-124 (196)
383 cd00227 CPT Chloramphenicol (C 97.4 0.00013 2.8E-09 64.8 3.8 37 175-211 2-38 (175)
384 PRK13949 shikimate kinase; Pro 97.4 0.00014 3E-09 64.4 3.7 31 177-207 3-33 (169)
385 PRK14974 cell division protein 97.4 0.0034 7.4E-08 61.6 13.7 73 174-246 139-234 (336)
386 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00015 3.2E-09 64.7 3.8 36 178-215 2-37 (183)
387 TIGR02239 recomb_RAD51 DNA rep 97.4 0.00052 1.1E-08 66.9 7.9 117 171-288 92-244 (316)
388 KOG3347 Predicted nucleotide k 97.4 0.00014 3E-09 62.0 3.3 31 176-206 8-38 (176)
389 PRK14532 adenylate kinase; Pro 97.4 0.00015 3.3E-09 65.0 3.8 36 177-214 2-37 (188)
390 COG2804 PulE Type II secretory 97.4 0.00048 1E-08 69.9 7.4 96 136-245 233-338 (500)
391 PRK12339 2-phosphoglycerate ki 97.4 0.001 2.2E-08 60.4 9.0 36 350-385 159-194 (197)
392 COG2274 SunT ABC-type bacterio 97.4 0.0005 1.1E-08 73.8 8.0 29 171-199 495-523 (709)
393 TIGR02533 type_II_gspE general 97.4 0.00055 1.2E-08 70.6 8.1 96 136-245 217-322 (486)
394 PRK06217 hypothetical protein; 97.4 0.00018 3.9E-09 64.4 4.0 31 177-207 3-33 (183)
395 TIGR02655 circ_KaiC circadian 97.3 0.0021 4.6E-08 66.4 12.3 110 171-289 17-166 (484)
396 PRK12724 flagellar biosynthesi 97.3 0.0062 1.3E-07 61.2 15.0 138 147-293 194-349 (432)
397 TIGR01613 primase_Cterm phage/ 97.3 0.00082 1.8E-08 65.2 8.7 139 144-311 52-203 (304)
398 cd03213 ABCG_EPDR ABCG transpo 97.3 0.0018 3.8E-08 58.6 10.3 106 171-290 31-171 (194)
399 PLN02200 adenylate kinase fami 97.3 0.00045 9.6E-09 64.5 6.4 41 173-215 41-81 (234)
400 PF05970 PIF1: PIF1-like helic 97.3 0.0011 2.4E-08 66.0 9.6 103 173-288 20-149 (364)
401 PRK14531 adenylate kinase; Pro 97.3 0.00022 4.7E-09 63.9 4.1 34 177-212 4-37 (183)
402 cd03227 ABC_Class2 ABC-type Cl 97.3 0.0014 3E-08 57.5 9.0 105 174-292 20-143 (162)
403 cd02021 GntK Gluconate kinase 97.3 0.00021 4.6E-09 61.5 3.8 27 178-204 2-28 (150)
404 COG2805 PilT Tfp pilus assembl 97.3 0.00057 1.2E-08 64.9 6.8 71 175-245 125-209 (353)
405 cd03232 ABC_PDR_domain2 The pl 97.3 0.0023 4.9E-08 57.7 10.6 106 172-291 30-169 (192)
406 COG1120 FepC ABC-type cobalami 97.3 0.0015 3.2E-08 61.5 9.5 29 171-199 24-52 (258)
407 COG0563 Adk Adenylate kinase a 97.3 0.00027 5.8E-09 63.1 4.4 27 177-203 2-28 (178)
408 PLN03186 DNA repair protein RA 97.3 0.00095 2.1E-08 65.7 8.6 117 171-288 119-271 (342)
409 PRK10436 hypothetical protein; 97.3 0.00057 1.2E-08 69.9 7.3 95 137-245 194-298 (462)
410 COG1102 Cmk Cytidylate kinase 97.3 0.00022 4.8E-09 61.7 3.5 28 178-205 3-30 (179)
411 TIGR01313 therm_gnt_kin carboh 97.3 0.00023 5E-09 62.2 3.7 32 178-211 1-32 (163)
412 COG4088 Predicted nucleotide k 97.3 0.00089 1.9E-08 60.3 7.3 23 178-200 4-26 (261)
413 cd02020 CMPK Cytidine monophos 97.3 0.00025 5.4E-09 60.5 3.7 30 178-207 2-31 (147)
414 PRK06547 hypothetical protein; 97.3 0.00025 5.5E-09 62.9 3.9 35 173-207 13-47 (172)
415 COG1136 SalX ABC-type antimicr 97.3 0.003 6.5E-08 58.3 11.0 28 171-198 27-54 (226)
416 TIGR02525 plasmid_TraJ plasmid 97.3 0.00047 1E-08 68.6 6.1 70 176-245 150-236 (372)
417 cd01428 ADK Adenylate kinase ( 97.3 0.00024 5.2E-09 63.8 3.8 35 178-214 2-36 (194)
418 cd03229 ABC_Class3 This class 97.3 0.0025 5.5E-08 56.6 10.2 107 172-291 23-162 (178)
419 TIGR02655 circ_KaiC circadian 97.2 0.0023 5E-08 66.2 11.3 77 171-247 259-366 (484)
420 PRK13900 type IV secretion sys 97.2 0.00044 9.4E-09 67.9 5.6 73 173-245 158-246 (332)
421 cd01130 VirB11-like_ATPase Typ 97.2 0.00047 1E-08 61.9 5.4 72 173-244 23-110 (186)
422 TIGR03574 selen_PSTK L-seryl-t 97.2 0.0018 3.9E-08 60.9 9.6 34 178-211 2-38 (249)
423 COG1122 CbiO ABC-type cobalt t 97.2 0.00037 8.1E-09 65.0 4.8 29 171-199 26-54 (235)
424 PF01745 IPT: Isopentenyl tran 97.2 0.0005 1.1E-08 62.4 5.3 138 177-331 3-145 (233)
425 cd03285 ABC_MSH2_euk MutS2 hom 97.2 0.0042 9E-08 57.5 11.7 24 174-197 29-52 (222)
426 TIGR00064 ftsY signal recognit 97.2 0.0068 1.5E-07 57.9 13.5 74 173-246 70-166 (272)
427 PRK14530 adenylate kinase; Pro 97.2 0.00031 6.7E-09 64.6 4.1 30 177-206 5-34 (215)
428 cd03217 ABC_FeS_Assembly ABC-t 97.2 0.0023 5E-08 58.0 9.8 107 171-291 22-165 (200)
429 COG1117 PstB ABC-type phosphat 97.2 0.0015 3.2E-08 59.3 8.2 27 171-197 29-55 (253)
430 cd02027 APSK Adenosine 5'-phos 97.2 0.0012 2.5E-08 57.2 7.5 35 178-212 2-39 (149)
431 smart00487 DEXDc DEAD-like hel 97.2 0.0014 3E-08 57.8 8.1 24 176-199 25-49 (201)
432 PTZ00088 adenylate kinase 1; P 97.2 0.00035 7.5E-09 65.0 4.3 37 175-213 6-42 (229)
433 PRK11889 flhF flagellar biosyn 97.2 0.0037 8E-08 62.3 11.6 96 147-246 217-332 (436)
434 PRK13539 cytochrome c biogenes 97.2 0.0035 7.6E-08 57.1 10.9 29 171-199 24-52 (207)
435 PTZ00202 tuzin; Provisional 97.2 0.019 4E-07 58.0 16.4 60 140-209 261-320 (550)
436 PRK10416 signal recognition pa 97.2 0.0067 1.5E-07 59.2 13.3 74 173-246 112-208 (318)
437 PRK12608 transcription termina 97.2 0.0021 4.6E-08 63.5 9.7 113 175-287 133-281 (380)
438 TIGR02788 VirB11 P-type DNA tr 97.2 0.00052 1.1E-08 66.7 5.5 76 169-244 138-228 (308)
439 PF08433 KTI12: Chromatin asso 97.2 0.0015 3.3E-08 62.2 8.6 81 178-271 4-95 (270)
440 PRK05057 aroK shikimate kinase 97.2 0.00042 9.2E-09 61.5 4.5 34 175-208 4-37 (172)
441 PRK13541 cytochrome c biogenes 97.2 0.006 1.3E-07 55.0 12.0 29 171-199 22-50 (195)
442 cd03215 ABC_Carb_Monos_II This 97.2 0.0028 6.1E-08 56.6 9.7 107 171-291 22-165 (182)
443 TIGR02538 type_IV_pilB type IV 97.2 0.00082 1.8E-08 70.7 7.2 95 137-245 292-396 (564)
444 PRK13946 shikimate kinase; Pro 97.2 0.00035 7.5E-09 62.7 3.8 33 175-207 10-42 (184)
445 PLN02674 adenylate kinase 97.2 0.00072 1.6E-08 63.3 5.9 39 173-213 29-67 (244)
446 PRK14722 flhF flagellar biosyn 97.2 0.0021 4.6E-08 63.8 9.6 27 173-199 135-161 (374)
447 PRK13538 cytochrome c biogenes 97.2 0.0042 9E-08 56.5 10.9 29 171-199 23-51 (204)
448 cd03239 ABC_SMC_head The struc 97.2 0.0042 9E-08 55.5 10.6 101 177-291 24-159 (178)
449 PRK03731 aroL shikimate kinase 97.2 0.00042 9.1E-09 61.1 4.2 31 177-207 4-34 (171)
450 PRK06696 uridine kinase; Valid 97.2 0.00097 2.1E-08 61.7 6.7 40 173-212 20-62 (223)
451 PRK00279 adk adenylate kinase; 97.2 0.00075 1.6E-08 62.0 5.9 35 177-213 2-36 (215)
452 COG1125 OpuBA ABC-type proline 97.2 0.0022 4.8E-08 59.7 8.8 28 171-198 23-50 (309)
453 COG1119 ModF ABC-type molybden 97.1 0.0045 9.7E-08 57.4 10.7 62 225-298 180-241 (257)
454 PRK13833 conjugal transfer pro 97.1 0.0012 2.6E-08 64.4 7.5 70 175-244 144-225 (323)
455 PF08298 AAA_PrkA: PrkA AAA do 97.1 0.001 2.2E-08 65.0 6.8 62 141-210 61-124 (358)
456 PF10443 RNA12: RNA12 protein; 97.1 0.038 8.2E-07 55.4 18.0 151 148-327 3-231 (431)
457 PRK13894 conjugal transfer ATP 97.1 0.00051 1.1E-08 67.0 4.8 71 174-244 147-229 (319)
458 PRK13764 ATPase; Provisional 97.1 0.0005 1.1E-08 72.2 4.9 71 174-245 256-335 (602)
459 PRK09302 circadian clock prote 97.1 0.0043 9.3E-08 64.6 11.9 110 171-289 27-176 (509)
460 PRK11176 lipid transporter ATP 97.1 0.0012 2.5E-08 69.9 7.8 29 171-199 365-393 (582)
461 PF08303 tRNA_lig_kinase: tRNA 97.1 0.0044 9.6E-08 54.0 9.9 133 181-329 5-147 (168)
462 PRK08154 anaerobic benzoate ca 97.1 0.0012 2.6E-08 64.3 7.2 36 172-207 130-165 (309)
463 COG1131 CcmA ABC-type multidru 97.1 0.0026 5.5E-08 61.5 9.4 49 232-293 152-200 (293)
464 PRK14528 adenylate kinase; Pro 97.1 0.00044 9.6E-09 62.2 3.8 34 177-212 3-36 (186)
465 COG2909 MalT ATP-dependent tra 97.1 0.029 6.2E-07 60.3 17.6 155 175-348 37-228 (894)
466 PRK13851 type IV secretion sys 97.1 0.00062 1.3E-08 67.1 5.0 74 171-244 158-246 (344)
467 PRK14527 adenylate kinase; Pro 97.1 0.00043 9.4E-09 62.3 3.7 32 173-204 4-35 (191)
468 COG1118 CysA ABC-type sulfate/ 97.1 0.0036 7.9E-08 59.7 9.8 28 171-198 24-51 (345)
469 TIGR01360 aden_kin_iso1 adenyl 97.1 0.0005 1.1E-08 61.3 4.0 34 177-212 5-38 (188)
470 TIGR00150 HI0065_YjeE ATPase, 97.1 0.001 2.3E-08 56.3 5.7 30 173-202 20-49 (133)
471 PF13245 AAA_19: Part of AAA d 97.1 0.00082 1.8E-08 51.2 4.6 23 177-199 12-35 (76)
472 PRK02496 adk adenylate kinase; 97.1 0.0005 1.1E-08 61.4 3.9 29 177-205 3-31 (184)
473 TIGR01351 adk adenylate kinase 97.1 0.00048 1E-08 63.1 3.9 34 178-213 2-35 (210)
474 PF00406 ADK: Adenylate kinase 97.1 0.00075 1.6E-08 58.3 4.9 35 180-216 1-35 (151)
475 PRK11174 cysteine/glutathione 97.1 0.0018 3.9E-08 68.6 8.7 29 171-199 372-400 (588)
476 cd01878 HflX HflX subfamily. 97.1 0.015 3.3E-07 52.5 13.6 23 176-198 42-64 (204)
477 cd03115 SRP The signal recogni 97.1 0.0085 1.8E-07 52.8 11.6 33 177-209 2-37 (173)
478 PF09848 DUF2075: Uncharacteri 97.1 0.0011 2.3E-08 65.7 6.4 23 177-199 3-25 (352)
479 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.0058 1.3E-07 53.4 10.2 23 177-199 4-26 (159)
480 PF10236 DAP3: Mitochondrial r 97.0 0.059 1.3E-06 52.4 18.2 46 306-352 258-307 (309)
481 PRK00409 recombination and DNA 97.0 0.0056 1.2E-07 66.8 12.2 101 176-290 328-450 (782)
482 PHA02530 pseT polynucleotide k 97.0 0.0017 3.7E-08 62.6 7.5 36 176-212 3-38 (300)
483 cd03269 ABC_putative_ATPase Th 97.0 0.007 1.5E-07 55.2 11.1 29 171-199 22-50 (210)
484 COG4555 NatA ABC-type Na+ tran 97.0 0.0064 1.4E-07 54.8 10.1 45 232-290 149-193 (245)
485 PF13238 AAA_18: AAA domain; P 97.0 0.00045 9.9E-09 57.2 2.8 22 178-199 1-22 (129)
486 KOG0058 Peptide exporter, ABC 97.0 0.0026 5.6E-08 67.0 8.8 29 171-199 490-518 (716)
487 PRK13540 cytochrome c biogenes 97.0 0.0033 7.2E-08 57.0 8.7 28 172-199 24-51 (200)
488 cd03233 ABC_PDR_domain1 The pl 97.0 0.0061 1.3E-07 55.4 10.4 29 171-199 29-57 (202)
489 PF06414 Zeta_toxin: Zeta toxi 97.0 0.0021 4.6E-08 58.3 7.3 42 173-214 13-55 (199)
490 PF12780 AAA_8: P-loop contain 97.0 0.0048 1E-07 58.7 9.9 92 142-246 9-101 (268)
491 KOG3928 Mitochondrial ribosome 97.0 0.027 5.9E-07 55.8 15.1 50 306-356 405-458 (461)
492 TIGR02868 CydC thiol reductant 97.0 0.0017 3.6E-08 67.9 7.5 29 171-199 357-385 (529)
493 CHL00195 ycf46 Ycf46; Provisio 97.0 0.047 1E-06 56.4 17.8 125 234-380 81-206 (489)
494 PF13086 AAA_11: AAA domain; P 97.0 0.00088 1.9E-08 61.3 4.6 23 177-199 19-41 (236)
495 PRK09544 znuC high-affinity zi 97.0 0.0025 5.4E-08 60.1 7.8 29 171-199 26-54 (251)
496 PRK10867 signal recognition pa 97.0 0.014 3E-07 59.3 13.5 196 173-384 98-342 (433)
497 TIGR01526 nadR_NMN_Atrans nico 97.0 0.002 4.3E-08 63.2 7.2 39 176-214 163-201 (325)
498 TIGR01448 recD_rel helicase, p 97.0 0.0051 1.1E-07 66.6 10.9 24 176-199 339-362 (720)
499 PRK09302 circadian clock prote 96.9 0.0069 1.5E-07 63.1 11.4 108 171-288 269-407 (509)
500 PF13481 AAA_25: AAA domain; P 96.9 0.0012 2.7E-08 59.1 5.2 76 174-249 31-156 (193)
No 1
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-101 Score=698.13 Aligned_cols=399 Identities=86% Similarity=1.347 Sum_probs=395.9
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHhhhCcccccCCCCCcccccchhhHHhhhhcCCceeeeeeeecCCCCcCCceEEe
Q 015875 1 MQGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVIN 80 (399)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (399)
+||.+||+..|+++|++|+++.++++.++|+||+|+|+|||++|++..+.+++++++||+|++|.++|+.+..+.+|++.
T Consensus 37 ~yg~~pya~~ik~~e~di~~l~~ki~~~~gikesdtglapp~~wdl~~dkq~mq~eqplqvarctkii~~~~~d~~yvin 116 (435)
T KOG0729|consen 37 SYGQGPYAAQIKKVEADIEDLLKKINELTGIKESDTGLAPPALWDLAADKQRMQEEQPLQVARCTKIISGNSEDPKYVIN 116 (435)
T ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHhhCccccccCCCChHHHHHhhhHHHhcccCCceeheeeeecCCCCCCcceeee
Confidence 59999999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred ecccceEEEecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCcccccceecCCCCccccccCcHHHHHHHHHHHhcC
Q 015875 81 VKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELP 160 (399)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~ 160 (399)
++++++|||.+++.+++.++++||||++++.+|+++.+||+++||++++|.++++|+++|.|+||+.+++++|++.++.|
T Consensus 117 ~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veekpdvty~dvggckeqieklrevve~p 196 (435)
T KOG0729|consen 117 VKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELP 196 (435)
T ss_pred HHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEE
Q 015875 161 MLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFF 240 (399)
Q Consensus 161 ~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~i 240 (399)
+.||+.|.++|+.||+|||+|||||||||++|||+|+++++.|+++.+|+|+++|+|+++++++++|+.|+....|||||
T Consensus 197 ll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiff 276 (435)
T KOG0729|consen 197 LLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFF 276 (435)
T ss_pred ccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHH
Q 015875 241 DEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQI 320 (399)
Q Consensus 241 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~I 320 (399)
||||++++.|++++.++++++|++++++++++++|++++++.|+++||+|+.|||+|+||||+|+.++|.+|+++.|..|
T Consensus 277 deidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i 356 (435)
T KOG0729|consen 277 DEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHI 356 (435)
T ss_pred eccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhccccCCCCccccCC
Q 015875 321 FKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN 399 (399)
Q Consensus 321 l~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~~~~~~~~~~~~~~~ 399 (399)
|++|.+.|++..++.++.||++|++.+|++|+++|.+|+|+|+++++...|..||.+|+++|+++|.+|+.|++||.||
T Consensus 357 ~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av~kvvkgy~kfsatprym~yn 435 (435)
T KOG0729|consen 357 FKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKGYAKFSATPRYMTYN 435 (435)
T ss_pred EEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccCCcchhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-91 Score=657.86 Aligned_cols=390 Identities=55% Similarity=0.886 Sum_probs=376.3
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHhhhCcccccCCCCCcccccchhhHHhhhhcCCceeeeeeeecCCCCcCCceEEee
Q 015875 2 QGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINV 81 (399)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (399)
|...+|...+.+.+..+.+...++..+...+..+..+.+...|+.+++......+.|++||++.+.++. ..++|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~----~~~iVks 91 (406)
T COG1222 16 YEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLREEIERLKEPPLIVGTVLEVLDD----GRAIVKS 91 (406)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhcCCCceEEEEEEEcCC----ceEEEEe
Confidence 456688898999999999888888887777777788888889999999999999999999999999997 4599999
Q ss_pred cccceEEEecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCC
Q 015875 82 KQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPM 161 (399)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~ 161 (399)
+++.+|+|.+.+.++...|+||++|++++.++++...||++.||.++.|.+++.|+++|+||||+++|+++|+++|++|+
T Consensus 92 ~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL 171 (406)
T COG1222 92 STGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPL 171 (406)
T ss_pred CCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEe
Q 015875 162 LHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFD 241 (399)
Q Consensus 162 ~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iD 241 (399)
+||++|..+|++||+|||||||||||||+||||+|++++++|+++.+|+|+++|+|++++++|++|..|+.++|||||||
T Consensus 172 ~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiD 251 (406)
T COG1222 172 KNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFID 251 (406)
T ss_pred cCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHH
Q 015875 242 EVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIF 321 (399)
Q Consensus 242 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il 321 (399)
|||+++++|++++.+++.++|++|++||++||||++.++|.||||||+++.|||||+|||||||.|+||+|+.+.|.+||
T Consensus 252 EIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il 331 (406)
T COG1222 252 EIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEIL 331 (406)
T ss_pred chhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhccccCCCCcc
Q 015875 322 KIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKY 395 (399)
Q Consensus 322 ~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~~~~~~~~~~~ 395 (399)
++|.++|++.+++|++.|+..++|+||+||+++|++|+|+|+|+++..||++||.+|+++|.+...+.+.+..|
T Consensus 332 ~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~~~~~~~~~ 405 (406)
T COG1222 332 KIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKKKLSSTARY 405 (406)
T ss_pred HHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999888777776655
No 3
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-79 Score=551.74 Aligned_cols=377 Identities=48% Similarity=0.790 Sum_probs=366.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHhhhCcccccCCCCCcccccchhhHHhhhhcCCceeeeeeeecCCCCcCCceEEeecc
Q 015875 4 LGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQ 83 (399)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (399)
..||.++|.++|..+.+..+++++|++++ .|++ ...+++++..+.-.++...||++++.++. ++.++++..
T Consensus 19 ~~y~~~ki~~~~~~v~~kt~nlrrleaqr---neln--~kvr~lreel~~lqe~gsyvgev~k~m~k----~kVLVKvhp 89 (404)
T KOG0728|consen 19 RQYYLQKIEELQLQVAEKTQNLRRLEAQR---NELN--AKVRLLREELQLLQEPGSYVGEVVKAMGK----KKVLVKVHP 89 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh--HHHHHHHHHHHHHhcCcchHHHHHHhcCc----ceEEEEEcC
Confidence 36899999999999999999999999999 4666 88999999999999999999999999987 789999999
Q ss_pred cceEEEecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCC
Q 015875 84 IAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLH 163 (399)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~ 163 (399)
..+|++.+...++..++++|.||++...+|.+++.||.++||.++.|.+++.|+.+|+.+||++.+++++++.|++|.+|
T Consensus 90 egKyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKH 169 (404)
T KOG0728|consen 90 EGKYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKH 169 (404)
T ss_pred CCcEEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecC
Q 015875 164 PEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEV 243 (399)
Q Consensus 164 ~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEi 243 (399)
|++|..+|+..|+|+|||||||||||+||+++|+++.+.|+++++++++++|+|++.++++++|-.|+.++|+|||+|||
T Consensus 170 PELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdei 249 (404)
T KOG0728|consen 170 PELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEI 249 (404)
T ss_pred HHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHH
Q 015875 244 DAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 323 (399)
Q Consensus 244 D~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~ 323 (399)
|++++.|.+++++++.++|++++++|+++|+|....++.||++||+.+.|||+++||||+|+.|+||+|+.+.|.+||++
T Consensus 250 dsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilki 329 (404)
T KOG0728|consen 250 DSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKI 329 (404)
T ss_pred cccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhcccc
Q 015875 324 HTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKF 389 (399)
Q Consensus 324 ~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~~~~~ 389 (399)
|.+++++..++++..+|..+.|.||++++.+|++|+|+|+++++-++|++||+-|+.+|+......
T Consensus 330 hsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k~~e~ 395 (404)
T KOG0728|consen 330 HSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 395 (404)
T ss_pred hhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999999999998766443
No 4
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-68 Score=480.45 Aligned_cols=327 Identities=46% Similarity=0.789 Sum_probs=319.7
Q ss_pred cCCceeeeeeeecCCCCcCCceEEeecccceEEEecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCcccccceecC
Q 015875 56 EQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEK 135 (399)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 135 (399)
..|+++|.+.+.++. +..++....|..|+|.+-++++.+.++|+++|++++.+..+...||+..|++.+++...++
T Consensus 74 svplvigqfle~vdq----nt~ivgsttgsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ek 149 (408)
T KOG0727|consen 74 SVPLVIGQFLEAVDQ----NTAIVGSTTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEK 149 (408)
T ss_pred ccchHHHHHHHhhhc----cCceeecccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCC
Confidence 699999999999997 4589999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhh
Q 015875 136 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 215 (399)
Q Consensus 136 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~ 215 (399)
|+++|.||||++-+++++++++++|+.|.++|.+.|++||+|||+|||||||||+||+++|+++.+.|+++.+|+|+++|
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqky 229 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 229 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCc
Q 015875 216 VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDP 295 (399)
Q Consensus 216 ~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~ 295 (399)
.|+++++++++|+.|+.++|+||||||||+++.+|++.+.+.+.++|+.|+++|++|+||+...+|.||++||+.+.+||
T Consensus 230 lgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldp 309 (408)
T KOG0727|consen 230 LGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDP 309 (408)
T ss_pred hccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHH
Q 015875 296 ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDF 375 (399)
Q Consensus 296 al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~ 375 (399)
+|+||||+|+.|+||+|+.++++-+|.....+|++.+++|++.+..+-+..|+++|.++|++|+|.|.+.++..|...||
T Consensus 310 allrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~ 389 (408)
T KOG0727|consen 310 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDF 389 (408)
T ss_pred hhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 015875 376 LDAVNKVIKGY 386 (399)
Q Consensus 376 ~~ai~~v~~~~ 386 (399)
++|++.+.+..
T Consensus 390 e~ay~~~vk~~ 400 (408)
T KOG0727|consen 390 EKAYKTVVKKD 400 (408)
T ss_pred HHHHHhhcCCc
Confidence 99999987544
No 5
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-68 Score=488.21 Aligned_cols=327 Identities=48% Similarity=0.817 Sum_probs=319.5
Q ss_pred cCCceeeeeeeecCCCCcCCceEEeecccceEEEecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCcccccceecC
Q 015875 56 EQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEK 135 (399)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 135 (399)
.+|+.||+..+++++ .-++|....+.+|.|++.+.++.+.|+||+.|.++....++...|..+.||.++.|.++..
T Consensus 104 GtPmsvg~leEiidd----~haivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKa 179 (440)
T KOG0726|consen 104 GTPMSVGTLEEIIDD----NHAIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKA 179 (440)
T ss_pred CCccccccHHHHhcC----CceEEecccCchheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccceeeecccC
Confidence 599999999999987 3588899999999999999999999999999999998899999999999999999999999
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhh
Q 015875 136 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 215 (399)
Q Consensus 136 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~ 215 (399)
|..+|.||||++.++++|++.+++|+.||+.|+..|++||+||+|||+||||||+||+|+|+.+.+.|+++.+++|.++|
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQky 259 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCc
Q 015875 216 VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDP 295 (399)
Q Consensus 216 ~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~ 295 (399)
.|++++.+|++|+.|..++|+|+||||||+++.+|.+.++++..++|+++++||+++++|+++++|.||+|||+.+.|||
T Consensus 260 lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDP 339 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDP 339 (440)
T ss_pred hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHH
Q 015875 296 ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDF 375 (399)
Q Consensus 296 al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~ 375 (399)
+|+||||+|+.|+|+.||...+..||.+|..+|.+..+++++.+...-+.+||+||.++|++|++.|+|+.+..+|.+||
T Consensus 340 aLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF 419 (440)
T KOG0726|consen 340 ALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDF 419 (440)
T ss_pred hhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 015875 376 LDAVNKVIKGY 386 (399)
Q Consensus 376 ~~ai~~v~~~~ 386 (399)
.+|.++|+...
T Consensus 420 ~ka~e~V~~~K 430 (440)
T KOG0726|consen 420 KKAKEKVLYKK 430 (440)
T ss_pred HHHHHHHHHhc
Confidence 99999998655
No 6
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-66 Score=470.05 Aligned_cols=343 Identities=45% Similarity=0.759 Sum_probs=320.2
Q ss_pred ccchhhHHhhhhcCCceeeeeeeecCCCCc-----------------CCceEEeecccceEEEecCCCCCCCCCCCCcee
Q 015875 44 WDLVSDKQMMQEEQPLQVARCTKIISPNSE-----------------DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRV 106 (399)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 106 (399)
...+.+..+.....|.+|+.+++.++.+.. ..-++++.+.-..|...+-..++++.|+||+.|
T Consensus 57 IkeN~EkIk~Nk~LPYLV~NvvE~ld~~~~~~~e~sg~n~~ld~qrkgkcaViktStRqt~fLPvvGLvd~~~LkPgDLV 136 (424)
T KOG0652|consen 57 IKENTEKIKVNKQLPYLVSNVVELLDMDPNDDEEDSGANIDLDSQRKGKCAVIKTSTRQTYFLPVVGLVDPDKLKPGDLV 136 (424)
T ss_pred HHhhHHHhhccccCchHHhhHHHHhcCCcccchhccCCcccccccccceeEEEecccceeeeeeeecccChhhCCCccee
Confidence 444556666777899999999998863210 112466666666665555566999999999999
Q ss_pred eecCccceeeccCCCCCCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCC
Q 015875 107 GVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGT 186 (399)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGt 186 (399)
++++.+|-+...||+..|..+..|.+++.|..+|+||||++.++++|.++|.+|+.|++.|.++|+.||+|+|+||||||
T Consensus 137 gvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGT 216 (424)
T KOG0652|consen 137 GVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGT 216 (424)
T ss_pred eecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHH
Q 015875 187 GKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML 266 (399)
Q Consensus 187 GKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~ 266 (399)
|||++||++|..++..|+.+.++.+++.|+|++.+.+|+.|..|+..+|+||||||+|+++.+|+++...++.++|++++
T Consensus 217 GKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTML 296 (424)
T KOG0652|consen 217 GKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTML 296 (424)
T ss_pred cHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCC
Q 015875 267 EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS 346 (399)
Q Consensus 267 ~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~ 346 (399)
++|++++||.+...|.||++||+.+.|||+|+|+||+|+.|+||.|+.+.|..|+++|.++|+..++++++.|++.+++|
T Consensus 297 ELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddF 376 (424)
T KOG0652|consen 297 ELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDF 376 (424)
T ss_pred HHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhc
Q 015875 347 TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 347 sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~~ 386 (399)
+|++++++|.+|+|.|+|++.+.|+.+||.+++.+|....
T Consensus 377 NGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqakK 416 (424)
T KOG0652|consen 377 NGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAKK 416 (424)
T ss_pred CchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999986543
No 7
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.5e-58 Score=457.79 Aligned_cols=369 Identities=41% Similarity=0.686 Sum_probs=331.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhCcccccCCCCCcccccchhhHHhhhhcCCceeeeeeeecCCCCcCCceEEeecccceE
Q 015875 8 STSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKF 87 (399)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (399)
...+++++.++..+..+.+.+....++- . .....+..+ ...-..+|+.||++.+.++. .+++|+...+.+|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~ 91 (398)
T PTZ00454 21 YEKLKELEKELEFLDIQEEYIKEEQKNL---K-RELIRAKEE-VKRIQSVPLVIGQFLEMIDS----NYGIVSSTSGSNY 91 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHH-HHHHhCCCceEEEEEEEEcC----CEEEEEcCCCCEE
Confidence 3445555555555555555444432100 0 011223333 33334799999999999987 5689999999999
Q ss_pred EEecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHH
Q 015875 88 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKF 167 (399)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~ 167 (399)
++.+.+.++...+++|++|+++..++.+...||+..++.+..|.+.+.|+++|+||+|++.++++|++.+.+|+.+|+.|
T Consensus 92 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~ 171 (398)
T PTZ00454 92 YVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELY 171 (398)
T ss_pred EEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCccc
Q 015875 168 VKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIG 247 (399)
Q Consensus 168 ~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~ 247 (399)
..+|+.+|+++|||||||||||++|+++|++++.+|+.+.++++..++.|++++.++.+|..++..+|+||||||+|.++
T Consensus 172 ~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~ 251 (398)
T PTZ00454 172 EQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIA 251 (398)
T ss_pred HhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhc
Q 015875 248 GARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 327 (399)
Q Consensus 248 ~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~ 327 (399)
.+|.+...+.+.++++.+.+++++++++....+++||+|||+++.+|++++|||||++.|+|++|+.++|.+||+.++.+
T Consensus 252 ~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 252 TKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK 331 (398)
T ss_pred cccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc
Confidence 98877666677889999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 015875 328 MNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 328 ~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~ 385 (399)
+++..+++++.++..++||+|+||.++|++|++.|+++++..|+.+||.+|+++++..
T Consensus 332 ~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 332 MNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhc
Confidence 9998899999999999999999999999999999999999999999999999999765
No 8
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=4.2e-57 Score=451.75 Aligned_cols=332 Identities=46% Similarity=0.791 Sum_probs=316.8
Q ss_pred HhhhhcCCceeeeeeeecCCCCcCCceEEeecccceEEEecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCccccc
Q 015875 51 QMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMM 130 (399)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~ 130 (399)
...-...|++||++.+.+++ ..++|+...+.+|+|.+.+.++.+.|++|++|.++..+..+...+++.+|+.+..|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~ 172 (438)
T PTZ00361 97 VDDLRGSPLSVGTLEEIIDE----NHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVM 172 (438)
T ss_pred HHHhhCCCcEEEEEEEEeCC----CeEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhc
Confidence 33344799999999999986 56999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccc
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 210 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~ 210 (399)
.+++.|+.+|+||+|++.++++|++++..|+.+|++|..+|+.+|+++|||||||||||++|+++|++++.+|+.+.+++
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~se 252 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSE 252 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 211 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 211 l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
+.++|.|++...++.+|..+....|+||||||||.++.+|.+..++++.+.++.++++|++++++....++.||+|||++
T Consensus 253 L~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~ 332 (438)
T PTZ00361 253 LIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRI 332 (438)
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCCh
Confidence 99999999999999999999999999999999999999887777777889999999999999998888899999999999
Q ss_pred CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCc
Q 015875 291 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTV 370 (399)
Q Consensus 291 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~I 370 (399)
+.+|++++|||||++.|+|++|+.++|.+||+.++.++.+..+++++.++..++|++|+||+++|++|++.|+++++..|
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~V 412 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKV 412 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhc
Q 015875 371 TEKDFLDAVNKVIKGY 386 (399)
Q Consensus 371 t~ed~~~ai~~v~~~~ 386 (399)
+.+||.+|+++++...
T Consensus 413 t~~D~~~A~~~v~~~~ 428 (438)
T PTZ00361 413 TQADFRKAKEKVLYRK 428 (438)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999997553
No 9
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.6e-54 Score=431.97 Aligned_cols=372 Identities=47% Similarity=0.788 Sum_probs=331.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhCcccccCCCCCcccccchhhHHhhhhcCCceeeeeeeecCCCCcCCceEEeecccceEE
Q 015875 9 TSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFV 88 (399)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (399)
+.+.+++.+++.++.+++++....+.- . ....-+.........+|..++++.+.+++ .+.++....+..|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~v~~~~g~~~~ 78 (389)
T PRK03992 8 ERNSELEEQIRQLELKLRDLEAENEKL---E--RELERLKSELEKLKSPPLIVATVLEVLDD----GRVVVKSSGGPQFL 78 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHhhCCCceEEEEEEEeCC----CeEEEEECCCCEEE
Confidence 344555555555555555444333200 0 12222333334444699999999999987 44788888888899
Q ss_pred EecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHH
Q 015875 89 VGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFV 168 (399)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~ 168 (399)
++....+....+++|.+|.++.....+...+|...++.+..+.+.+.|+++|++|+|++++++++++.+..|+.+|+.|.
T Consensus 79 ~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~ 158 (389)
T PRK03992 79 VNVSPFIDREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFE 158 (389)
T ss_pred EeccccCCHhHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHH
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccC
Q 015875 169 KLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG 248 (399)
Q Consensus 169 ~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~ 248 (399)
.+|+.+|+++|||||||||||++|+++|++++.+|+.++++++..+|.|+++..++.+|..++...|+||||||+|.+++
T Consensus 159 ~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~ 238 (389)
T PRK03992 159 EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAA 238 (389)
T ss_pred hcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhcc
Q 015875 249 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM 328 (399)
Q Consensus 249 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~ 328 (399)
.+.+++.+++.++++.+.+++.+++++....++.||+|||+++.+|++++|||||++.|+|++|+.++|.+||+.+++.+
T Consensus 239 ~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~ 318 (389)
T PRK03992 239 KRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM 318 (389)
T ss_pred ccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC
Confidence 88777666778899999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhcccc
Q 015875 329 NCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKF 389 (399)
Q Consensus 329 ~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~~~~~ 389 (399)
.+..++++..++..++|++|+||+++|++|++.|+++++..|+.+||.+|++++.+...+.
T Consensus 319 ~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 319 NLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccccc
Confidence 8888899999999999999999999999999999999999999999999999998877555
No 10
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-56 Score=409.17 Aligned_cols=319 Identities=47% Similarity=0.821 Sum_probs=306.8
Q ss_pred eeeeeeeecCCCCcCCceEEeecccceEEEecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCcccccceecCCCCc
Q 015875 60 QVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVT 139 (399)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (399)
+++.+.+..+. ++++|+..+|..|++.....++..+|..|.||+++-....+..-||..+| .+-.|..+...+++
T Consensus 56 ~~gevlk~l~~----~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd-~vy~m~~e~~~~~s 130 (388)
T KOG0651|consen 56 IIGEVLKQLED----EKFIVKASSGPRYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVD-LVYNMSHEDPRNIS 130 (388)
T ss_pred hhHHHHhhccc----cceEeecCCCCcEEEEcccccchhhhccCceeeeeeeeeehhcccchHHH-HHHHhhhcCccccC
Confidence 35566665554 67999999999999999999999999999999999888899999999999 88889999999999
Q ss_pred cccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchh
Q 015875 140 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEG 219 (399)
Q Consensus 140 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~ 219 (399)
|+.++|.-.++.++++.|+.|+.+|++|.++|+++|++++||||||+|||++|+++|..+++.|+.+..+++..+|.|++
T Consensus 131 ~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEs 210 (388)
T KOG0651|consen 131 FENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGES 210 (388)
T ss_pred HHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccC
Q 015875 220 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLR 299 (399)
Q Consensus 220 ~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r 299 (399)
.+.+|+.|..|+.+.||+||+||||++++.+++.+...+.++|++|.++++++++++..++|.+|+|||+|+.|+|+|+|
T Consensus 211 aRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlR 290 (388)
T KOG0651|consen 211 ARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLR 290 (388)
T ss_pred HHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcC
Confidence 99999999999999999999999999999998888888999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 300 PGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 300 ~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
|||+++.+++|+|+...|..|++.|...+.....++.+.+..+.+||+|+|+++.|++|.++|+++.+..+-+|||..++
T Consensus 291 pGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~v 370 (388)
T KOG0651|consen 291 PGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLV 370 (388)
T ss_pred CccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHHHHHH
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 015875 380 NKVI 383 (399)
Q Consensus 380 ~~v~ 383 (399)
+++.
T Consensus 371 rk~~ 374 (388)
T KOG0651|consen 371 RKQA 374 (388)
T ss_pred HHHH
Confidence 9874
No 11
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-55 Score=438.47 Aligned_cols=262 Identities=44% Similarity=0.775 Sum_probs=247.5
Q ss_pred CCCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC
Q 015875 122 KIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA 201 (399)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~ 201 (399)
.+.|+..+....+.|+++|+||||+++++++|++.|++|++||+.|.++|+.||+|||||||||||||++||++|++.++
T Consensus 415 ~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 415 GIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred cCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC
Confidence 45667677777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCe
Q 015875 202 CFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 281 (399)
Q Consensus 202 ~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 281 (399)
+|+.+.+++++++|+|++++.++++|++|+..+||||||||||++++.|++++. ....+.+.++|++|||+....+|
T Consensus 495 nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 495 NFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred CeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcE
Confidence 999999999999999999999999999999999999999999999999974332 45678888999999999999999
Q ss_pred EEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHH
Q 015875 282 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMF 361 (399)
Q Consensus 282 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~ 361 (399)
+||+|||+|+.||++++||||||+.|++|+||.+.|.+||+.+++++++.+++|++.||..|+||||+||.++|++|++.
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc--CCCccHHHHHHHHHHHHhhc
Q 015875 362 AIRAR--RKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 362 A~~~~--~~~It~ed~~~ai~~v~~~~ 386 (399)
|++++ ...|+.+||.+|++.+.++.
T Consensus 652 a~~e~i~a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 652 ALRESIEATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred HHHHhcccccccHHHHHHHHHhhcccC
Confidence 99986 56799999999999886543
No 12
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.4e-51 Score=408.65 Aligned_cols=358 Identities=49% Similarity=0.836 Sum_probs=327.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhCcccccCCCCCcccccchhhHHhhhhcCCceeeeeeeecCCCCcCCceEEeecccceEE
Q 015875 9 TSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFV 88 (399)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (399)
.++++++.++++++.+.+.+.- ...-+++........|..++++.+.++. .+++++...+.+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 69 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLER------------ELERLRSEIERLRSPPLIVGTVLEVLDD----NRVVVKSSTGPNFV 69 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhCCCeEEEEEEEEecC----CEEEEEeCCCCEEE
Confidence 4567777777777777663332 1233444445555799999999999987 46888899999999
Q ss_pred EecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHH
Q 015875 89 VGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFV 168 (399)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~ 168 (399)
+...+.+++..+++|++|.++...+.+...+|...++.+..+.+.+.|.++|+||+|+++++++|++++..|+.+|+.|.
T Consensus 70 ~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~ 149 (364)
T TIGR01242 70 VNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFE 149 (364)
T ss_pred EeccccCCHhHCCCCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccC
Q 015875 169 KLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG 248 (399)
Q Consensus 169 ~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~ 248 (399)
.+|+.+|+++|||||||||||++|+++|++++.+|+.+.++++...+.|+....++.+|..++...|+||||||+|.++.
T Consensus 150 ~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~ 229 (364)
T TIGR01242 150 EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAA 229 (364)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhcc
Q 015875 249 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM 328 (399)
Q Consensus 249 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~ 328 (399)
.+.+...+++.+.++.+.+++.+++++...+++.||+|||+++.+|++++|||||++.++|+.|+.++|.+||+.++..+
T Consensus 230 ~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~ 309 (364)
T TIGR01242 230 KRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM 309 (364)
T ss_pred ccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC
Confidence 88776666788899999999999998877789999999999999999999999999999999999999999999999998
Q ss_pred CCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 015875 329 NCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 329 ~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v 382 (399)
.+..++++..++..+.|++|+|++++|++|++.|+++++..|+.+||.+|++++
T Consensus 310 ~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 310 KLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred CCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 888888999999999999999999999999999999999999999999999886
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-52 Score=415.08 Aligned_cols=262 Identities=43% Similarity=0.711 Sum_probs=244.6
Q ss_pred CCCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC
Q 015875 122 KIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA 201 (399)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~ 201 (399)
.+.|+..+..+...|+++|+||||++++..+|..+|.+|.++|+.|..+|+..|.|||||||||||||+||||+|++.+.
T Consensus 492 ~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~ 571 (802)
T KOG0733|consen 492 KIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA 571 (802)
T ss_pred hcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC
Confidence 45678888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCe
Q 015875 202 CFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 281 (399)
Q Consensus 202 ~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 281 (399)
+|+.|.+++|+.+|+|++++.+|.+|+.|+..+||||||||||+|.+.|++.. .....+.+.+||.+|||+..+.+|
T Consensus 572 NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV 648 (802)
T KOG0733|consen 572 NFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGV 648 (802)
T ss_pred ceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccce
Confidence 99999999999999999999999999999999999999999999999997655 455678899999999999999999
Q ss_pred EEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHh--ccCCCCcccHHHHHHHCC--CCcHHHHHHHHHH
Q 015875 282 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR--TMNCERDIRFELLARLCP--NSTGADIRSVCTE 357 (399)
Q Consensus 282 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~--~~~~~~~~~~~~la~~~~--g~sg~di~~l~~~ 357 (399)
.||+|||+|+.+||+++||||||+.+++++|+.++|.+||+.+++ +..+..+++++.|++.+. ||||+||..+|++
T Consensus 649 ~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvre 728 (802)
T KOG0733|consen 649 YVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVRE 728 (802)
T ss_pred EEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999 667789999999998765 9999999999999
Q ss_pred HHHHHHHHc-------------C---CCccHHHHHHHHHHHHhhc
Q 015875 358 AGMFAIRAR-------------R---KTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 358 A~~~A~~~~-------------~---~~It~ed~~~ai~~v~~~~ 386 (399)
|.+.|+++. + ..+|..||++|+.++.++.
T Consensus 729 Asi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 729 ASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 999998863 1 1377889999999986643
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-50 Score=391.07 Aligned_cols=252 Identities=40% Similarity=0.660 Sum_probs=239.0
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh
Q 015875 134 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 213 (399)
Q Consensus 134 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~ 213 (399)
...+++|+|+-|+++++++|.++++. ++.|+.|.++|-+-|+||||.||||||||+||||+|.+.+.||+...+++|-.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34578999999999999999999986 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 015875 214 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 293 (399)
Q Consensus 214 ~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 293 (399)
.|+|.+++.+|++|..|+..+||||||||||+++++|.... -.....++.|+|.+||||..+.+|+||+|||.|+.|
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 99999999999999999999999999999999999986532 226678999999999999999999999999999999
Q ss_pred CccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHH
Q 015875 294 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEK 373 (399)
Q Consensus 294 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~e 373 (399)
|++|.||||||++|.+|.||.+.|.+||+.|+.++....++|+..||+-|.||+|+|+.++++.|+..|...+...||++
T Consensus 453 D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~ 532 (752)
T KOG0734|consen 453 DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMK 532 (752)
T ss_pred hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccc
Q 015875 374 DFLDAVNKVIKGYQKF 389 (399)
Q Consensus 374 d~~~ai~~v~~~~~~~ 389 (399)
|++.|-++++-+-++.
T Consensus 533 ~LE~akDrIlMG~ERk 548 (752)
T KOG0734|consen 533 HLEFAKDRILMGPERK 548 (752)
T ss_pred HHhhhhhheeeccccc
Confidence 9999999987665443
No 15
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-48 Score=391.80 Aligned_cols=254 Identities=41% Similarity=0.726 Sum_probs=233.6
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccc
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 210 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~ 210 (399)
...+.|+++|+||||+++++.+|.+.|+.|++||++|.. |+++..|||||||||||||++|||+|.++...|+.|.++|
T Consensus 662 GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPE 740 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPE 740 (953)
T ss_pred CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHH
Confidence 345689999999999999999999999999999999987 8888999999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEecC
Q 015875 211 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD--ARGNIKVLMATN 288 (399)
Q Consensus 211 l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~--~~~~v~vI~atn 288 (399)
|..+|+|+++..+|++|++|+..+||||||||+|+++++|+.++.+| .-+.+...|+|.++|++. +...|+||+|||
T Consensus 741 LLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVVSQLLAELDgls~~~s~~VFViGATN 819 (953)
T KOG0736|consen 741 LLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVVSQLLAELDGLSDSSSQDVFVIGATN 819 (953)
T ss_pred HHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc-ccHHHHHHHHHHHhhcccCCCCCceEEEecCC
Confidence 99999999999999999999999999999999999999997655433 346788899999999997 567899999999
Q ss_pred CCCCCCccccCCCCceeEEEecCC-CHHHHHHHHHHHHhccCCCCcccHHHHHHHCC-CCcHHHHHHHHHHHHHHHHHHc
Q 015875 289 RPDTLDPALLRPGRLDRKVEFGLP-DLESRTQIFKIHTRTMNCERDIRFELLARLCP-NSTGADIRSVCTEAGMFAIRAR 366 (399)
Q Consensus 289 ~~~~ld~al~r~gRf~~~i~~~~P-~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~-g~sg~di~~l~~~A~~~A~~~~ 366 (399)
||+.|||+|+||||||+.+++.++ |.+.+..+|+...+++.++.++++..+|..|+ .+||+|+.++|..|++.|+++.
T Consensus 820 RPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~ 899 (953)
T KOG0736|consen 820 RPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRT 899 (953)
T ss_pred CccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 66778889999999999999999999999986 8999999999999999998863
Q ss_pred -----------------CCCccHHHHHHHHHHHHhhc
Q 015875 367 -----------------RKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 367 -----------------~~~It~ed~~~ai~~v~~~~ 386 (399)
.-.|+++||.++.++..++.
T Consensus 900 i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 900 IHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 12499999999999886654
No 16
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-47 Score=390.90 Aligned_cols=254 Identities=43% Similarity=0.761 Sum_probs=240.3
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
+....++|.|+.|+++++++|.+++.. +++|+.|.++|++.|+|+||+||||||||+||||+|.+.+.||+.+++++|+
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 445669999999999999999999975 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccC-CCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 213 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFD-DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 213 ~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~-~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
..+.|.+...++++|..|+..+|||||+||||+++..|.. ...+++.+...+|.|+|-+||++....+|+|+++||+++
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD 461 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcc
Confidence 9999999999999999999999999999999999999953 334567788999999999999999999999999999999
Q ss_pred CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCc
Q 015875 292 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTV 370 (399)
Q Consensus 292 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~I 370 (399)
.||++++||||||+.|.++.|+..+|.+|++.|++..++. +++++..+|.+|+||+|+||.++|++|+..|.+++...|
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 9999999999999999999999999999999999999885 778898999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhcc
Q 015875 371 TEKDFLDAVNKVIKGYQ 387 (399)
Q Consensus 371 t~ed~~~ai~~v~~~~~ 387 (399)
+..||..|++.++.+..
T Consensus 542 ~~~~~~~a~~Rvi~G~~ 558 (774)
T KOG0731|consen 542 GTKDLEYAIERVIAGME 558 (774)
T ss_pred chhhHHHHHHHHhcccc
Confidence 99999999998877653
No 17
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-46 Score=373.92 Aligned_cols=225 Identities=39% Similarity=0.722 Sum_probs=211.8
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhh
Q 015875 136 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 215 (399)
Q Consensus 136 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~ 215 (399)
++++|.+|||++..+.+|.+.+.. ++||+.|..+|+.||+|||||||||||||+||+|+|++++.||+.+++.++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 478999999999999999999987 9999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHH-HHHHHHHHHHhcCCCCC----CCeEEEEecCCC
Q 015875 216 VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEV-QRTMLEIVNQLDGFDAR----GNIKVLMATNRP 290 (399)
Q Consensus 216 ~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~-~~~l~~ll~~l~~~~~~----~~v~vI~atn~~ 290 (399)
.|++++.++++|+.|+..+|||+||||||+++++|... ..++ ++.+.+||..||++... ..|+||+|||+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a----qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA----QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH----HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 99999999999999999999999999999999998542 2333 56667899999887544 579999999999
Q ss_pred CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH
Q 015875 291 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 365 (399)
Q Consensus 291 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~ 365 (399)
+.|||+|+|+||||+.|.+..|+..+|.+||+..++++.+..++++..||.+|+||.|+|+.++|.+|++.|+++
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876
No 18
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-46 Score=352.22 Aligned_cols=251 Identities=38% Similarity=0.615 Sum_probs=229.1
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccc
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 210 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~ 210 (399)
.....|.+.|+||.|+.++++-|++++.+|+..|+.|..+ ..|.+|||++||||||||+||||+|.+++.+|+.|+.+.
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 3566889999999999999999999999999999999863 478999999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC-CC---eEEEEe
Q 015875 211 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR-GN---IKVLMA 286 (399)
Q Consensus 211 l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~-~~---v~vI~a 286 (399)
+.++|.|++++++|-+|+.|+..+|++|||||||+|+++|+.+ +.+....+.-.+||.+|||+... .+ |+|+++
T Consensus 281 ltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 281 LTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred hhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 9999999999999999999999999999999999999998654 33455566667999999997543 23 899999
Q ss_pred cCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHc
Q 015875 287 TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR 366 (399)
Q Consensus 287 tn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~ 366 (399)
||.|+.||.+++| ||...|.+|+|+.+.|..++++.++.....++++++.|+..++||||+||.++|++|.|.+.|+.
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999998852
Q ss_pred -----------------CCCccHHHHHHHHHHHHhhc
Q 015875 367 -----------------RKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 367 -----------------~~~It~ed~~~ai~~v~~~~ 386 (399)
...|+.+||++|+.++.++.
T Consensus 437 i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSv 473 (491)
T KOG0738|consen 437 IAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSV 473 (491)
T ss_pred HhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCC
Confidence 23499999999999997654
No 19
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-45 Score=374.66 Aligned_cols=260 Identities=42% Similarity=0.738 Sum_probs=248.7
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccc
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 210 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~ 210 (399)
..+....++|.|+.|++++++++.+.+.. +++|..|..+|.+-|+|+||+||||||||+|||++|.+.+.||+.+++|+
T Consensus 140 ~~~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~ 218 (596)
T COG0465 140 YLEDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 218 (596)
T ss_pred hcccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchh
Confidence 34456789999999999999999999975 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 211 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 211 l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
++..|+|.+...+|++|.+|+.++||||||||||+++..|..+..+++.+...++.++|.+||++..+..|+||++||+|
T Consensus 219 FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRp 298 (596)
T COG0465 219 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRP 298 (596)
T ss_pred hhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCc
Confidence 99999999999999999999999999999999999999997776778889999999999999999988999999999999
Q ss_pred CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCc
Q 015875 291 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTV 370 (399)
Q Consensus 291 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~I 370 (399)
+.+|++|+||||||+.|.++.||...|.+|++.|+++..+..++++..+|+.|+|++|+|+.+++++|...|.++++..|
T Consensus 299 dVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i 378 (596)
T COG0465 299 DVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEI 378 (596)
T ss_pred ccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhccccCC
Q 015875 371 TEKDFLDAVNKVIKGYQKFSA 391 (399)
Q Consensus 371 t~ed~~~ai~~v~~~~~~~~~ 391 (399)
++.||.+|+++++.+.++.+.
T Consensus 379 ~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 379 TMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred eccchHHHHHHHhcCcCcCCc
Confidence 999999999999987766554
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.7e-43 Score=318.91 Aligned_cols=242 Identities=36% Similarity=0.574 Sum_probs=221.9
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
+..++++++|++|++++++..+-++++ +.+|+.|..+ .|++||||||||||||++|+++|+++..||+.+.+.++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 457899999999999999998766655 8999999875 589999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 015875 213 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 292 (399)
Q Consensus 213 ~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ 292 (399)
+.++|++++.++++|+.|+..+|||+||||+|+++-+|.-..-- -++......||.+||++..+.+|+.|++||+|+.
T Consensus 189 GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelR--GDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 189 GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELR--GDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhc--ccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 99999999999999999999999999999999998766432221 2355677788899999999999999999999999
Q ss_pred CCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHH-HHHHHHHHHHHHcCCCcc
Q 015875 293 LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRS-VCTEAGMFAIRARRKTVT 371 (399)
Q Consensus 293 ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~-l~~~A~~~A~~~~~~~It 371 (399)
||+++++ ||...|+|.+|+.++|.+|++.+++++++.-+.++..++..+.|+||+||.. ++..|...|+.+++..|+
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~ 344 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVE 344 (368)
T ss_pred cCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhh
Confidence 9999999 9999999999999999999999999999998899999999999999999974 788899999999999999
Q ss_pred HHHHHHHHHHH
Q 015875 372 EKDFLDAVNKV 382 (399)
Q Consensus 372 ~ed~~~ai~~v 382 (399)
.+|++.|+++.
T Consensus 345 ~edie~al~k~ 355 (368)
T COG1223 345 REDIEKALKKE 355 (368)
T ss_pred HHHHHHHHHhh
Confidence 99999999984
No 21
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=3.7e-42 Score=348.59 Aligned_cols=322 Identities=35% Similarity=0.546 Sum_probs=264.9
Q ss_pred eeeeecCCCCcCCceEEeecccceEEEecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCcccccceecCCCCcccc
Q 015875 63 RCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYND 142 (399)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 142 (399)
++.+.++. .++++....+.+++++....+....+++|+++.++.........+|+ ..+..+..++.|+++|+|
T Consensus 111 ~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~p~v~~~d 183 (512)
T TIGR03689 111 TLKEVLGD----GRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEAVPK---AEVEDLVLEEVPDVTYAD 183 (512)
T ss_pred EEEEEeCC----CeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhcCCH---hHHhcceeecCCCCCHHH
Confidence 44455544 56888888999999999999999999999999998765544444552 235567788899999999
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc----------eEEEeccchh
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------FIRVIGSELV 212 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~----------~i~v~~s~l~ 212 (399)
|+|++++++++++.+..|+.+|+.|..+|+.+|+++|||||||||||++|+++|++++.+ |+.+.++++.
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl 263 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELL 263 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhc
Confidence 999999999999999999999999999999999999999999999999999999987543 6677888999
Q ss_pred hhhhchhHHHHHHHHHHHHcC----CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 213 QKYVGEGARMVRELFQMARSK----KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 213 ~~~~g~~~~~v~~~f~~a~~~----~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
.+|.|++++.++.+|+.++.. .|+||||||+|.++.+|..+.+ +......+.++++.++++...++++||+|||
T Consensus 264 ~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s--~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN 341 (512)
T TIGR03689 264 NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS--SDVETTVVPQLLSELDGVESLDNVIVIGASN 341 (512)
T ss_pred ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc--chHHHHHHHHHHHHhcccccCCceEEEeccC
Confidence 999999999999999988763 6999999999999988754221 1122455678999999988888999999999
Q ss_pred CCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhc-cCCC---------CcccHHHHHH-----------------
Q 015875 289 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT-MNCE---------RDIRFELLAR----------------- 341 (399)
Q Consensus 289 ~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~-~~~~---------~~~~~~~la~----------------- 341 (399)
+++.|||+++||||||.+|+|++|+.++|.+||+.++.. +.+. ...+...++.
T Consensus 342 ~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~ 421 (512)
T TIGR03689 342 REDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATSEENRYVE 421 (512)
T ss_pred ChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhcccceeE
Confidence 999999999999999999999999999999999999864 2321 1111222221
Q ss_pred ------------HCCCCcHHHHHHHHHHHHHHHHHH----cCCCccHHHHHHHHHHHHhhccccCCCC
Q 015875 342 ------------LCPNSTGADIRSVCTEAGMFAIRA----RRKTVTEKDFLDAVNKVIKGYQKFSATP 393 (399)
Q Consensus 342 ------------~~~g~sg~di~~l~~~A~~~A~~~----~~~~It~ed~~~ai~~v~~~~~~~~~~~ 393 (399)
..+.+||+.|.++|..|...|+.+ +...|+.+|+..|+..-....+++..+.
T Consensus 422 ~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~ 489 (512)
T TIGR03689 422 VTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTT 489 (512)
T ss_pred EEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCC
Confidence 245679999999999999999876 3457999999999998877776665553
No 22
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.8e-41 Score=363.59 Aligned_cols=254 Identities=48% Similarity=0.778 Sum_probs=233.9
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccc
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 210 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~ 210 (399)
...+.|.++|++|+|++.++++|++.+.+|+.+++.|.++|+.+|+++|||||||||||++|+++|++++.+|+.+.+++
T Consensus 443 ~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~ 522 (733)
T TIGR01243 443 VLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPE 522 (733)
T ss_pred hhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 211 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 211 l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
+..+|+|++++.++.+|..|+...||||||||||.+++.|..... .....+.+.+++.+++++....+++||+|||+|
T Consensus 523 l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~ 600 (733)
T TIGR01243 523 ILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD--TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRP 600 (733)
T ss_pred HhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCCh
Confidence 999999999999999999999999999999999999988754322 234567778899999998888899999999999
Q ss_pred CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHc----
Q 015875 291 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR---- 366 (399)
Q Consensus 291 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~---- 366 (399)
+.+|++++|||||++.+++++|+.++|.+||+.+.+++.+..+++++.+|..++||||+||.++|++|.+.|+++.
T Consensus 601 ~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~ 680 (733)
T TIGR01243 601 DILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSP 680 (733)
T ss_pred hhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999998889999999999999999999999999999998742
Q ss_pred --------------CCCccHHHHHHHHHHHHhhc
Q 015875 367 --------------RKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 367 --------------~~~It~ed~~~ai~~v~~~~ 386 (399)
...|+.+||..|+.++.+..
T Consensus 681 ~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 681 AKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred cchhhhcccccccccCcccHHHHHHHHHHcCCCC
Confidence 12699999999999886654
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-41 Score=348.25 Aligned_cols=250 Identities=48% Similarity=0.769 Sum_probs=233.7
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
...+.++|++++|++.+++.+++.+.+++.+++.|...++.+++++|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 015875 213 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 292 (399)
Q Consensus 213 ~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ 292 (399)
++|+|++++.++.+|..|+..+||||||||+|++++.|+.+..+ ...+.+.+++.++++.....+|+||+|||+|+.
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~---~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ 390 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG---SGRRVVGQLLTELDGIEKAEGVLVIAATNRPDD 390 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch---HHHHHHHHHHHHhcCCCccCceEEEecCCCccc
Confidence 99999999999999999999999999999999999988654322 236888899999999999999999999999999
Q ss_pred CCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCC--CCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHc-CCC
Q 015875 293 LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC--ERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR-RKT 369 (399)
Q Consensus 293 ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~--~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~-~~~ 369 (399)
+|++++|||||++.+.+++|+..+|.+||+.+++.... ..+++++.++..+.||+|+||..+|++|.+.+.++. ...
T Consensus 391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~ 470 (494)
T COG0464 391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRRE 470 (494)
T ss_pred cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999996554 578999999999999999999999999999999998 788
Q ss_pred ccHHHHHHHHHHHHhh
Q 015875 370 VTEKDFLDAVNKVIKG 385 (399)
Q Consensus 370 It~ed~~~ai~~v~~~ 385 (399)
||.+||..|++.+.+.
T Consensus 471 ~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 471 VTLDDFLDALKKIKPS 486 (494)
T ss_pred ccHHHHHHHHHhcCCC
Confidence 9999999999986543
No 24
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=4.2e-41 Score=346.02 Aligned_cols=254 Identities=44% Similarity=0.770 Sum_probs=236.6
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
....|.++|+||+|++++++++++++.. +++++.|.+.|..+|+++|||||||||||++|+++|++++.+|+.++++++
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 4457899999999999999999998886 899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 212 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 212 ~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
...+.|.+...++.+|..++..+|+||||||||.++.++.....+.+.+..+.+.+++.+++++....+++||+|||+++
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD 204 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh
Confidence 99999999999999999999999999999999999988765444456677888999999999998888999999999999
Q ss_pred CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCcc
Q 015875 292 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVT 371 (399)
Q Consensus 292 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It 371 (399)
.+|++++|||||++.|+++.|+.++|.+||+.+++......++++..++..+.|++++||+++|++|...|.+++...|+
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~ 284 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEIT 284 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999887777889999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHhhc
Q 015875 372 EKDFLDAVNKVIKGY 386 (399)
Q Consensus 372 ~ed~~~ai~~v~~~~ 386 (399)
.+||..|+..+..+.
T Consensus 285 ~~~l~~a~~~~~~~~ 299 (495)
T TIGR01241 285 MNDIEEAIDRVIAGP 299 (495)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999987554
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-41 Score=339.28 Aligned_cols=230 Identities=39% Similarity=0.662 Sum_probs=218.0
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
.......|+||+|+.++++.+++.|++|.+.|.+|.+.+++.+.|+|||||||||||+||.++|...+..|+.|.++++.
T Consensus 659 ~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL 738 (952)
T KOG0735|consen 659 VKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELL 738 (952)
T ss_pred cccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHH
Confidence 34455899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 015875 213 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 292 (399)
Q Consensus 213 ~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ 292 (399)
.+|+|.++..+|++|..|+..+||||||||+|+++++|+.++.|-. .+...++|.+|||...-.+|.|++||.+|+.
T Consensus 739 ~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVT---DRVVNQlLTelDG~Egl~GV~i~aaTsRpdl 815 (952)
T KOG0735|consen 739 SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVT---DRVVNQLLTELDGAEGLDGVYILAATSRPDL 815 (952)
T ss_pred HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCch---HHHHHHHHHhhccccccceEEEEEecCCccc
Confidence 9999999999999999999999999999999999999987766543 4667788999999988899999999999999
Q ss_pred CCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH
Q 015875 293 LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 365 (399)
Q Consensus 293 ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~ 365 (399)
+||||+||||+|+.+.-+.|+..+|.+|++.+........++|++.+|..|+||+|+|+..+|..|.+.|..+
T Consensus 816 iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 816 IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988764
No 26
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-42 Score=317.11 Aligned_cols=231 Identities=37% Similarity=0.627 Sum_probs=210.9
Q ss_pred ccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEec
Q 015875 129 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 208 (399)
Q Consensus 129 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~ 208 (399)
.-.+.++|++.|+|+.|++.+++.|++++.+|++.|++|.. +-.|.+++||||||||||+.||+|+|.+.+.+|+.|+.
T Consensus 121 sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSS 199 (439)
T KOG0739|consen 121 SAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 199 (439)
T ss_pred hhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeeh
Confidence 34567899999999999999999999999999999999986 34688999999999999999999999999999999999
Q ss_pred cchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC-CCCeEEEEec
Q 015875 209 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLMAT 287 (399)
Q Consensus 209 s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~-~~~v~vI~at 287 (399)
|+|+++|+|++++.++.+|+.|+++.|+||||||||.+++.|+++. +....+.-.++|-+|.|... ..+|.|+++|
T Consensus 200 SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE---seasRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 200 SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE---SEASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc---hHHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 9999999999999999999999999999999999999999987654 44556677789999999864 4579999999
Q ss_pred CCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH
Q 015875 288 NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 365 (399)
Q Consensus 288 n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~ 365 (399)
|-|+.||.+++| ||.+.|++|+|+...|..+|+.|+...... .+.|+..|++.|+||||+||.-+++.|.|...|.
T Consensus 277 NiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 277 NIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred CCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 999999999999 999999999999999999999999876543 5678999999999999999999999999987764
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-41 Score=318.73 Aligned_cols=246 Identities=37% Similarity=0.648 Sum_probs=222.5
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhC-CCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG-IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 213 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g-~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~ 213 (399)
.-.++|+||+|++.+++++++.+..|+++|++|...+ ..|++|||||||||||||++|+++|++.+++|+-|.++.+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 4568999999999999999999999999999997544 478999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC--eEEEEecCCCC
Q 015875 214 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN--IKVLMATNRPD 291 (399)
Q Consensus 214 ~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~--v~vI~atn~~~ 291 (399)
++.|+.++.++.+|..|..-+|+||||||+|.+++.|. ++.+......-.+|+...||+.+..+ |+|++|||+|.
T Consensus 166 KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF 242 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc
Confidence 99999999999999999999999999999999999883 22344455555689999999977665 99999999999
Q ss_pred CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH----c-
Q 015875 292 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA----R- 366 (399)
Q Consensus 292 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~----~- 366 (399)
.+|.+++| |+.+.++++.|+..+|.+||+..++..++++++|+..+|..|.||||.||+++|+.|....+++ .
T Consensus 243 DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~ 320 (386)
T KOG0737|consen 243 DLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSET 320 (386)
T ss_pred cHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcc
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999876653 1
Q ss_pred -----------------------CCCccHHHHHHHHHHHHhh
Q 015875 367 -----------------------RKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 367 -----------------------~~~It~ed~~~ai~~v~~~ 385 (399)
...++++||..|.+.|...
T Consensus 321 ~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 321 GLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred cchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 2468899999999976544
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=4.6e-40 Score=343.19 Aligned_cols=253 Identities=42% Similarity=0.747 Sum_probs=236.4
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh
Q 015875 134 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 213 (399)
Q Consensus 134 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~ 213 (399)
..+.++|+|++|++++++++.+.+.. +++++.|..+|...|+++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 45678999999999999999998875 88999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 015875 214 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 293 (399)
Q Consensus 214 ~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 293 (399)
.+.|.+...++.+|..++...||||||||||.++..|..+..+++.+.+..+.++|.+++++..+.+++||++||+++.+
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDIL 334 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhh
Confidence 99998888999999999999999999999999998886655566778889999999999999888899999999999999
Q ss_pred CccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHH
Q 015875 294 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEK 373 (399)
Q Consensus 294 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~e 373 (399)
|++++|||||++.+.+++|+.++|.+||+.+++......++++..++..+.||+|+||+++|++|...|.+++...||.+
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~ 414 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMK 414 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999999999999999999999999999987777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 015875 374 DFLDAVNKVIKGYQ 387 (399)
Q Consensus 374 d~~~ai~~v~~~~~ 387 (399)
||..|++++..+..
T Consensus 415 dl~~Ai~rv~~g~~ 428 (638)
T CHL00176 415 EIDTAIDRVIAGLE 428 (638)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999876554
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=9.2e-39 Score=324.16 Aligned_cols=243 Identities=27% Similarity=0.427 Sum_probs=211.1
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 214 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~ 214 (399)
.++.+|++|+|++.+++.+++.... .+..+..+|+++|+|+|||||||||||++|+++|++++.+|+.++++.+.++
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGG 298 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccc
Confidence 4678999999999999999876643 2345567899999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 015875 215 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 294 (399)
Q Consensus 215 ~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 294 (399)
++|+++..++.+|..++..+||||||||||.++..+...+ ......+.+..++..++. ...+++||+|||+++.+|
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~--d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG--DSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLP 374 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC--CchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCC
Confidence 9999999999999999999999999999999987543221 122345556666666653 356799999999999999
Q ss_pred ccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC--CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccH
Q 015875 295 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE--RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTE 372 (399)
Q Consensus 295 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~--~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ 372 (399)
++++|+||||+.++++.|+.++|.+||+.++++.... .+.+++.++..|+||||+||.++|.+|...|..+++ .+|.
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~ 453 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTT 453 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCH
Confidence 9999999999999999999999999999999886532 478899999999999999999999999999987664 5899
Q ss_pred HHHHHHHHHHHhh
Q 015875 373 KDFLDAVNKVIKG 385 (399)
Q Consensus 373 ed~~~ai~~v~~~ 385 (399)
+||..|+..+.+.
T Consensus 454 ~dl~~a~~~~~Pl 466 (489)
T CHL00195 454 DDILLALKQFIPL 466 (489)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999998764
No 30
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=3.9e-37 Score=324.22 Aligned_cols=252 Identities=44% Similarity=0.767 Sum_probs=234.8
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh
Q 015875 134 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 213 (399)
Q Consensus 134 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~ 213 (399)
.....+|+++.|.+..++++.+.+.. +..++.|..++...|+++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 34567899999999999999999886 67888899899999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 015875 214 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 293 (399)
Q Consensus 214 ~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 293 (399)
.+.|.+...++.+|..++...||||||||+|.++..|.....+++.+....+.++|.+++++..+.+++||+|||+|+.+
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~l 303 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 303 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhc
Confidence 99999999999999999999999999999999998887655556677788899999999999888899999999999999
Q ss_pred CccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHH
Q 015875 294 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEK 373 (399)
Q Consensus 294 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~e 373 (399)
|++++|||||++.+.++.|+.++|.+||+.|+++..+..++++..++..+.||||+||.++|++|...|.+.++..|+.+
T Consensus 304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~ 383 (644)
T PRK10733 304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMV 383 (644)
T ss_pred CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHH
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 015875 374 DFLDAVNKVIKGY 386 (399)
Q Consensus 374 d~~~ai~~v~~~~ 386 (399)
||.+|+..+..+.
T Consensus 384 d~~~a~~~v~~g~ 396 (644)
T PRK10733 384 EFEKAKDKIMMGA 396 (644)
T ss_pred HHHHHHHHHhccc
Confidence 9999999886654
No 31
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=8.9e-37 Score=334.43 Aligned_cols=217 Identities=18% Similarity=0.315 Sum_probs=186.3
Q ss_pred ChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhh---------------------------
Q 015875 163 HPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY--------------------------- 215 (399)
Q Consensus 163 ~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~--------------------------- 215 (399)
....+.++|+.+|+||||+||||||||+||||+|.++++||+.+++++++.++
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 34456788999999999999999999999999999999999999999998653
Q ss_pred --------------hchhHH--HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC---
Q 015875 216 --------------VGEGAR--MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD--- 276 (399)
Q Consensus 216 --------------~g~~~~--~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~--- 276 (399)
++.+.+ .++.+|+.|+..+||||||||||+++.+. . ...++.+++++|++..
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-------s--~~ltL~qLLneLDg~~~~~ 1768 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-------S--NYLSLGLLVNSLSRDCERC 1768 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-------c--ceehHHHHHHHhccccccC
Confidence 122222 38899999999999999999999997642 1 1124678888888763
Q ss_pred CCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHH--hccCCCC-cccHHHHHHHCCCCcHHHHHH
Q 015875 277 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT--RTMNCER-DIRFELLARLCPNSTGADIRS 353 (399)
Q Consensus 277 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~--~~~~~~~-~~~~~~la~~~~g~sg~di~~ 353 (399)
...+|+||||||+|+.|||||+||||||+.|.++.|+..+|.+++..++ ++..+.. .++++.+|..|+||+||||.+
T Consensus 1769 s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLan 1848 (2281)
T CHL00206 1769 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVA 1848 (2281)
T ss_pred CCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHH
Confidence 4568999999999999999999999999999999999999999988654 4444443 367999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhccc
Q 015875 354 VCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQK 388 (399)
Q Consensus 354 l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~~~~ 388 (399)
+|++|++.|+++++..|+.+++..|+.++..+.+.
T Consensus 1849 LvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~ 1883 (2281)
T CHL00206 1849 LTNEALSISITQKKSIIDTNTIRSALHRQTWDLRS 1883 (2281)
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999877654
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-36 Score=301.64 Aligned_cols=239 Identities=41% Similarity=0.688 Sum_probs=222.2
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhh
Q 015875 136 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 215 (399)
Q Consensus 136 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~ 215 (399)
++++ ++++|+..++..+++.+++|+.+|..|...|+++|+++|+|||||||||.+++++|++.++.++.+++++++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6677 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHcCC-CEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 015875 216 VGEGARMVRELFQMARSKK-ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 294 (399)
Q Consensus 216 ~g~~~~~v~~~f~~a~~~~-p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 294 (399)
.|+++..+|..|+.+...+ |++|||||+|.++++|..... -..+...+++..+++.....+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999998 999999999999998754321 24566677788888888889999999999999999
Q ss_pred ccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHH
Q 015875 295 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 374 (399)
Q Consensus 295 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed 374 (399)
++++| ||||+.+++..|+..+|.+|++.+.+.++...+.++..++..++||.|+|+.++|++|.+.+.++ ++++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99999 99999999999999999999999999999988899999999999999999999999999999887 8889
Q ss_pred HHHHHHHHHhh
Q 015875 375 FLDAVNKVIKG 385 (399)
Q Consensus 375 ~~~ai~~v~~~ 385 (399)
|..|...+.+.
T Consensus 409 ~~~A~~~i~ps 419 (693)
T KOG0730|consen 409 FQEALMGIRPS 419 (693)
T ss_pred HHHHHhcCCch
Confidence 99888877554
No 33
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-35 Score=312.05 Aligned_cols=255 Identities=38% Similarity=0.661 Sum_probs=221.7
Q ss_pred ccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-----CCce
Q 015875 129 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACF 203 (399)
Q Consensus 129 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-----~~~~ 203 (399)
.+.......++|++|||++.++++|++.+-.|+.+|+.|.++++.||+|||||||||||||+.|+++|..+ ...|
T Consensus 253 ~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisf 332 (1080)
T KOG0732|consen 253 SDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISF 332 (1080)
T ss_pred cCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccch
Confidence 33444567799999999999999999999999999999999999999999999999999999999999876 3567
Q ss_pred EEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 015875 204 IRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 283 (399)
Q Consensus 204 i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v 283 (399)
+.-.+.+..++|+|+.++.++.+|+.|+...|+|||+||||.+++.|++....-+ ......+|..|+|++.++.|+|
T Consensus 333 fmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih---~SIvSTLLaLmdGldsRgqVvv 409 (1080)
T KOG0732|consen 333 FMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIH---ASIVSTLLALMDGLDSRGQVVV 409 (1080)
T ss_pred hhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhh---hhHHHHHHHhccCCCCCCceEE
Confidence 7777889999999999999999999999999999999999999998865432222 2344566777889999999999
Q ss_pred EEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHH
Q 015875 284 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFA 362 (399)
Q Consensus 284 I~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A 362 (399)
|+|||+++.+||+++|||||++.+.|++|+.+.|.+|+.+|.++..-. ....+..+|..+.||-|+||+++|++|.+.+
T Consensus 410 igATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~ 489 (1080)
T KOG0732|consen 410 IGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIA 489 (1080)
T ss_pred EcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999877632 2234678999999999999999999999999
Q ss_pred HHHcC----------------CCccHHHHHHHHHHHHhhc
Q 015875 363 IRARR----------------KTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 363 ~~~~~----------------~~It~ed~~~ai~~v~~~~ 386 (399)
+++.- ..|..+||..|+.+..+.-
T Consensus 490 ~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 490 LRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred hccccCeeecccccccccchhhhhhhHhhhhhhhccCCCC
Confidence 87642 2378888988888876544
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.4e-34 Score=308.71 Aligned_cols=249 Identities=47% Similarity=0.780 Sum_probs=222.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 214 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~ 214 (399)
.+.++|+||+|++++++++++.+..|+.+|+.|.++|+.+++++|||||||||||++|+++|++++.+|+.++++++..+
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 015875 215 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 294 (399)
Q Consensus 215 ~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 294 (399)
+.|+.+..++.+|+.+....|+||||||||.++.++.....+.+ .+.+.++++.++++.....++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~---~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVE---KRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHH---HHHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 99999999999999999999999999999999987744322222 234445556666666678899999999999999
Q ss_pred ccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHc--------
Q 015875 295 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR-------- 366 (399)
Q Consensus 295 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~-------- 366 (399)
++++|+|||++.++++.|+.++|.+||+.+.+.+.+..+.+++.++..++||+++++..+|++|.+.++++.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999998888788899999999999999999999999999887652
Q ss_pred -----------CCCccHHHHHHHHHHHHhhc
Q 015875 367 -----------RKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 367 -----------~~~It~ed~~~ai~~v~~~~ 386 (399)
...++.+||..|+..+.+..
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccccc
Confidence 12588999999998876543
No 35
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-35 Score=288.04 Aligned_cols=253 Identities=34% Similarity=0.591 Sum_probs=221.7
Q ss_pred cccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 128 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 128 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
.....+..+++.|+|+.|++.+++.+.+++.+|+..|+.|..+. .+++++||.||||+|||+|+++||.+.++.|+.+.
T Consensus 140 ~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iS 218 (428)
T KOG0740|consen 140 RNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNIS 218 (428)
T ss_pred HHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeecc
Confidence 33445667889999999999999999999999999999998754 56789999999999999999999999999999999
Q ss_pred ccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEE
Q 015875 208 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD--ARGNIKVLM 285 (399)
Q Consensus 208 ~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~--~~~~v~vI~ 285 (399)
++.|.++|+|+++..++.+|..|+..+|+|+||||+|.++.+|.+.. ++...+...+++-++++.. ...+|+||+
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e---~e~srr~ktefLiq~~~~~s~~~drvlvig 295 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNE---HESSRRLKTEFLLQFDGKNSAPDDRVLVIG 295 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcc---cccchhhhhHHHhhhccccCCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999995544 3333466777887777654 344799999
Q ss_pred ecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccC-CCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHH
Q 015875 286 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN-CERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 364 (399)
Q Consensus 286 atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~-~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~ 364 (399)
|||+|+.+|.+++| ||.+.+++|+|+.+.|..+|+.++...+ ...+.+++.|++.++||++.||.++|.+|.+--++
T Consensus 296 aTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 296 ATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred cCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 99999999999999 9999999999999999999999998773 34567899999999999999999999999886544
Q ss_pred HcC-------------CCccHHHHHHHHHHHHhhc
Q 015875 365 ARR-------------KTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 365 ~~~-------------~~It~ed~~~ai~~v~~~~ 386 (399)
... ..|+..||..+++.+.+..
T Consensus 374 ~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 374 ELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred hcccchhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 432 3488889999999887655
No 36
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-35 Score=287.42 Aligned_cols=252 Identities=37% Similarity=0.597 Sum_probs=217.6
Q ss_pred cCCCCcccc--ccCcHHHHHHH-HHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC-ceEEEecc
Q 015875 134 EKPDVTYND--VGGCKEQIEKM-REVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-CFIRVIGS 209 (399)
Q Consensus 134 ~~~~~~~~~--i~G~~~~~~~l-~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~-~~i~v~~s 209 (399)
..|++.|++ |||++.....+ +++...-.-.|+..+++|++.-+|+|||||||||||++||.|..-+++ +--.|+++
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 468888987 89999887765 566666677899999999999999999999999999999999998864 34568999
Q ss_pred chhhhhhchhHHHHHHHHHHHHc--------CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCe
Q 015875 210 ELVQKYVGEGARMVRELFQMARS--------KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 281 (399)
Q Consensus 210 ~l~~~~~g~~~~~v~~~f~~a~~--------~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 281 (399)
++..+|+|+++..+|.+|..|.+ ..-.||+|||||+++.+|++.+.+. .--.....+||.-+||.+.-.++
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~T-GVhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGST-GVHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCC-CccHHHHHHHHHhcccHHhhhcE
Confidence 99999999999999999998864 2235999999999999997644321 11134567888899999999999
Q ss_pred EEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccC----CCCcccHHHHHHHCCCCcHHHHHHHHHH
Q 015875 282 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----CERDIRFELLARLCPNSTGADIRSVCTE 357 (399)
Q Consensus 282 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~----~~~~~~~~~la~~~~g~sg~di~~l~~~ 357 (399)
.||+-||+++.+|.||+|||||.-.+++.+||...|.+|+++|.++|. +..++|+++||.+|.+|||++|..+++.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999998875 4588999999999999999999999999
Q ss_pred HHHHHHHHc---------------CCCccHHHHHHHHHHHHhhc
Q 015875 358 AGMFAIRAR---------------RKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 358 A~~~A~~~~---------------~~~It~ed~~~ai~~v~~~~ 386 (399)
|..+|..+. .-.|+.+||..|++++.+.+
T Consensus 451 A~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAF 494 (744)
T ss_pred HHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCccc
Confidence 999987653 12499999999999987765
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.5e-32 Score=263.60 Aligned_cols=205 Identities=19% Similarity=0.205 Sum_probs=163.6
Q ss_pred CCCCccccc-cCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh
Q 015875 135 KPDVTYNDV-GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 213 (399)
Q Consensus 135 ~~~~~~~~i-~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~ 213 (399)
....+|+++ +|+--...-+.+++....++ .....|+++|.+++||||||||||++|+++|++++++|+.++++++.+
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn--~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s 186 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKN--FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES 186 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhh--hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc
Confidence 345677777 66655555444444322211 122367899999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHc-----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC------------C
Q 015875 214 KYVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF------------D 276 (399)
Q Consensus 214 ~~~g~~~~~v~~~f~~a~~-----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~------------~ 276 (399)
+|+|++++.++++|..|+. .+||||||||||++++.+.+.+ .....+....+|++.+|+. .
T Consensus 187 k~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~--~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~ 264 (413)
T PLN00020 187 ENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ--YTVNNQMVNGTLMNIADNPTNVSLGGDWREKE 264 (413)
T ss_pred CcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC--cchHHHHHHHHHHHHhcCCccccccccccccc
Confidence 9999999999999999975 4799999999999999885322 2222333345777776642 3
Q ss_pred CCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCC
Q 015875 277 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS 346 (399)
Q Consensus 277 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~ 346 (399)
...+|+||+|||+|+.|||+|+||||||+.+ +.|+.++|.+||+.+++..++. ..++..|+..++|.
T Consensus 265 ~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq 331 (413)
T PLN00020 265 EIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQ 331 (413)
T ss_pred cCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCC
Confidence 4567999999999999999999999999964 6899999999999999998776 57788888888774
No 38
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.91 E-value=4.5e-25 Score=219.88 Aligned_cols=289 Identities=17% Similarity=0.225 Sum_probs=213.4
Q ss_pred ccchhhHHhhhhcCCceeeeeeeecCCCCcCCceEEeeccc-ceEEEecCCCCCCCCCCCCceeeecCccceeeccCCC-
Q 015875 44 WDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQI-AKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPP- 121 (399)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~- 121 (399)
.+++.+++...++.|+++.|.+..++. ++.+++.| ++|+.|+ ++++.+.. .+...|..
T Consensus 64 l~ll~~i~~~~~~~pVI~~Tg~g~i~~------AV~A~k~GA~Dfl~KP---~~~~~L~~-----------~v~ral~~~ 123 (464)
T COG2204 64 LELLKEIKSRDPDLPVIVMTGHGDIDT------AVEALRLGAFDFLEKP---FDLDRLLA-----------IVERALELR 123 (464)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCCCHHH------HHHHHhcCcceeeeCC---CCHHHHHH-----------HHHHHHHHh
Confidence 578899999999999999999999987 78889999 8999999 77666544 22222220
Q ss_pred CCCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc--
Q 015875 122 KIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-- 199 (399)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-- 199 (399)
........ ........+.+++|.+.+++++++.+.. -......|||+|++||||.++||+|++..
T Consensus 124 ~~~~e~~~--~~~~~~~~~~~liG~S~am~~l~~~i~k-----------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R 190 (464)
T COG2204 124 ELQRENRR--SLKRAKSLGGELVGESPAMQQLRRLIAK-----------VAPSDASVLITGESGTGKELVARAIHQASPR 190 (464)
T ss_pred hhhhhhhh--hhhccccccCCceecCHHHHHHHHHHHH-----------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcc
Confidence 00001000 1112234566799999999999999976 23567789999999999999999999865
Q ss_pred -CCceEEEeccc---------hhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHH
Q 015875 200 -DACFIRVIGSE---------LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 269 (399)
Q Consensus 200 -~~~~i~v~~s~---------l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 269 (399)
+.||+.+||.. |+++-.|.+......-.........++||||||..| +.++|..|+++|
T Consensus 191 ~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m-----------pl~~Q~kLLRvL 259 (464)
T COG2204 191 AKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM-----------PLELQVKLLRVL 259 (464)
T ss_pred cCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccC-----------CHHHHHHHHHHH
Confidence 57999999954 444444444444433222223344569999999999 899999999999
Q ss_pred HHh--cCCCC----CCCeEEEEecCCC--CCCCccccCCCCcee--EEEecCCCHHHHHH----HHHH----HHhccCC-
Q 015875 270 NQL--DGFDA----RGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ----IFKI----HTRTMNC- 330 (399)
Q Consensus 270 ~~l--~~~~~----~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~----Il~~----~~~~~~~- 330 (399)
++- ..+.. .-+|+||+|||+. +.+....+|.+.|++ ++.+..|++++|.+ ++++ +....+.
T Consensus 260 qe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~ 339 (464)
T COG2204 260 QEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP 339 (464)
T ss_pred HcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCC
Confidence 863 23322 2379999999974 556666677666666 88999999999998 3333 3444433
Q ss_pred CCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHH
Q 015875 331 ERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFL 376 (399)
Q Consensus 331 ~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~ 376 (399)
...++.+.+..++..-||+++++|-|.+...++......|+.+|+.
T Consensus 340 ~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~~~i~~~~l~ 385 (464)
T COG2204 340 PKGFSPEALAALLAYDWPGNVRELENVVERAVILSEGPEIEVEDLP 385 (464)
T ss_pred CCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCccccchhhcc
Confidence 3678889999999999999999999999999988888888888865
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.90 E-value=1.6e-22 Score=193.67 Aligned_cols=207 Identities=23% Similarity=0.319 Sum_probs=155.4
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCC---ceeEeCCCCCcHHHHHHHHHHhc-------CCceEEEeccc
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPK---GVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGSE 210 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~---~vLL~GppGtGKT~larala~~~-------~~~~i~v~~s~ 210 (399)
.+++|+++++++|++++.+ +..+..+.+.|+.++. +++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 3699999999999999876 4456777888876543 48999999999999999999864 23689999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 211 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 211 l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
+.+.+.|+.+..++.+|+.+. ++||||||+|.+...+.+ .....+.+..|+++++. ...+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~--~~~~~e~~~~L~~~me~-----~~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE--RDYGSEAIEILLQVMEN-----QRDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc--cchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcH
Confidence 999999988877788887764 359999999999654322 11235666666666653 34678888887642
Q ss_pred -----CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC--CcccHHHHH----HHC--CCC-cHHHHHHHHH
Q 015875 291 -----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE--RDIRFELLA----RLC--PNS-TGADIRSVCT 356 (399)
Q Consensus 291 -----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~--~~~~~~~la----~~~--~g~-sg~di~~l~~ 356 (399)
..++|++.+ ||+.+|+|++|+.+++.+|+..++++.... ++. ...+. +.. +.+ +++++++++.
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve 248 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALD 248 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 234699999 999999999999999999999999876533 221 22222 222 233 4799999998
Q ss_pred HHHHH
Q 015875 357 EAGMF 361 (399)
Q Consensus 357 ~A~~~ 361 (399)
.|...
T Consensus 249 ~~~~~ 253 (287)
T CHL00181 249 RARMR 253 (287)
T ss_pred HHHHH
Confidence 88664
No 40
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.89 E-value=9e-22 Score=188.58 Aligned_cols=208 Identities=22% Similarity=0.312 Sum_probs=156.0
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCC---CCceeEeCCCCCcHHHHHHHHHHhc-------CCceEEEeccch
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP---PKGVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGSEL 211 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~---~~~vLL~GppGtGKT~larala~~~-------~~~~i~v~~s~l 211 (399)
+++|++++++++++++.+ +..++.+.+.|+.+ ..+++|+||||||||++|+++|+.+ ..+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 599999999999999887 66788888889864 3489999999999999999998865 237999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-
Q 015875 212 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP- 290 (399)
Q Consensus 212 ~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~- 290 (399)
...+.|.....++.+|+.+. +++|||||++.+...+.+ .....+.+..|+++++. ...+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~--~~~~~~~~~~Ll~~le~-----~~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN-----QRDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc--cchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcHH
Confidence 99999988888888888764 369999999998643221 11234556666666652 34678888887642
Q ss_pred -C---CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHH----C--CC-CcHHHHHHHHHHH
Q 015875 291 -D---TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL----C--PN-STGADIRSVCTEA 358 (399)
Q Consensus 291 -~---~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~----~--~g-~sg~di~~l~~~A 358 (399)
+ .++|++.+ ||...|+||+++.+++..|++.++++.... .....+.+... . +. .+++++++++..|
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 2 35899999 999999999999999999999999876532 11112333332 1 11 2468888888877
Q ss_pred HHHH
Q 015875 359 GMFA 362 (399)
Q Consensus 359 ~~~A 362 (399)
....
T Consensus 250 ~~~~ 253 (284)
T TIGR02880 250 RLRQ 253 (284)
T ss_pred HHHH
Confidence 6543
No 41
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.1e-22 Score=193.62 Aligned_cols=210 Identities=22% Similarity=0.308 Sum_probs=165.7
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 214 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~ 214 (399)
..+.+|+.++-..+.+++|.+-+..+.+..+.|.+.|.+..+|.|||||||||||+++.|+|++++..++-++.++...
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~- 273 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL- 273 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-
Confidence 4459999999999999999999999999999999999999999999999999999999999999999888887665532
Q ss_pred hhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCC--CC--hHHHHHHHHHHHHhcCCCCCC--CeEEEEecC
Q 015875 215 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG--GD--NEVQRTMLEIVNQLDGFDARG--NIKVLMATN 288 (399)
Q Consensus 215 ~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~--~~--~~~~~~l~~ll~~l~~~~~~~--~v~vI~atn 288 (399)
... ++.++... ...+||+|+|||+-+.-+...... .. .....+|..||+.+||+-+.. .-+||+|||
T Consensus 274 ----n~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTN 346 (457)
T KOG0743|consen 274 ----DSD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTN 346 (457)
T ss_pred ----cHH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecC
Confidence 222 56555543 345799999999986544322111 11 123468888999999986554 568999999
Q ss_pred CCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCC--cHHHHHHH
Q 015875 289 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS--TGADIRSV 354 (399)
Q Consensus 289 ~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~--sg~di~~l 354 (399)
.++.|||||+||||+|.+|+++.=+..+-..+++.++..-. +..-+..+.+...+. ||||+...
T Consensus 347 h~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 347 HKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred ChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 99999999999999999999999999999999999886432 122345555555544 88888653
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=2.6e-21 Score=183.54 Aligned_cols=222 Identities=19% Similarity=0.256 Sum_probs=154.2
Q ss_pred cccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCC---CCceeEeCCCCCcHHHHHHHHHHhc-------CCceEEEecc
Q 015875 140 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP---PKGVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGS 209 (399)
Q Consensus 140 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~---~~~vLL~GppGtGKT~larala~~~-------~~~~i~v~~s 209 (399)
+++++|+++++++|++++.++... ......|..+ +.+++|+||||||||++|+++|+.+ ...++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467999999999999998775443 3334456643 3468999999999999999999864 3478899999
Q ss_pred chhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 210 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 210 ~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
++.+.+.|+....++.+|..+. ++||||||+|.|.... ........+..++..++.. ..++++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~------~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG------EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC------ccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999988899998764 4599999999995311 0111223334445555432 455666666543
Q ss_pred C-----CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHH---------CCCCcHHHHHHH
Q 015875 290 P-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL---------CPNSTGADIRSV 354 (399)
Q Consensus 290 ~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~---------~~g~sg~di~~l 354 (399)
. ..++|++++ ||...++||.++.+++.+|++.++...... .+.....++.. ....+++.++++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 2 246889998 998899999999999999999998865542 11123333221 123467889998
Q ss_pred HHHHHHHHHHH--cCCCccHHHH
Q 015875 355 CTEAGMFAIRA--RRKTVTEKDF 375 (399)
Q Consensus 355 ~~~A~~~A~~~--~~~~It~ed~ 375 (399)
+..|......+ ....++.+|+
T Consensus 231 ~e~a~~~~~~r~~~~~~~~~~~~ 253 (261)
T TIGR02881 231 IEKAIRRQAVRLLDKSDYSKEDL 253 (261)
T ss_pred HHHHHHHHHHHHhccCCCCHHHH
Confidence 88887654332 2233444444
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.88 E-value=8.1e-22 Score=166.41 Aligned_cols=130 Identities=39% Similarity=0.693 Sum_probs=110.7
Q ss_pred eeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCC-CEEEEEecCCcccCCccCCCCC
Q 015875 178 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKK-ACIVFFDEVDAIGGARFDDGVG 256 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~-p~il~iDEiD~l~~~r~~~~~~ 256 (399)
+||+||||||||++|+.+|+.++.+++.++++++...+.+...+.+..+|..+.... |+||||||+|.+.... +..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 689999999999999999999999999999999998899999999999999998887 9999999999998776 112
Q ss_pred CChHHHHHHHHHHHHhcCCCCC-CCeEEEEecCCCCCCCccccCCCCceeEEEecC
Q 015875 257 GDNEVQRTMLEIVNQLDGFDAR-GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 311 (399)
Q Consensus 257 ~~~~~~~~l~~ll~~l~~~~~~-~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~ 311 (399)
.+......+..++..++..... .++.+|++||.++.++++++| +||+..+++|+
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3444455555666666655443 569999999999999999997 89999999874
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=3.7e-21 Score=174.30 Aligned_cols=199 Identities=22% Similarity=0.270 Sum_probs=135.9
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
+...|.+++|++|+++.+..++-++...... -.+..++|||||||+|||+||+.||++++.+|..++++.+.
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 4467789999999999999988777642211 13455899999999999999999999999999988886542
Q ss_pred hhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc-----CCCC--------CC
Q 015875 213 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-----GFDA--------RG 279 (399)
Q Consensus 213 ~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-----~~~~--------~~ 279 (399)
. . ..+..++... ....||||||||++ +..+|..|+..++... +... -.
T Consensus 88 k--~----~dl~~il~~l--~~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 88 K--A----GDLAAILTNL--KEGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp S--C----HHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred h--H----HHHHHHHHhc--CCCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1 1 1222333333 34569999999999 7899999999998632 1111 13
Q ss_pred CeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCC-cccHHHHHHHCCCCcHHHHHHHHHHH
Q 015875 280 NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER-DIRFELLARLCPNSTGADIRSVCTEA 358 (399)
Q Consensus 280 ~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~A 358 (399)
++.+|+||.+...+.+.|+. ||.....+..++.++..+|++.....+++.- +.....||.++.| +|+-...+++.+
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 57899999999999999999 9988889999999999999998888777652 2335778888877 787777777665
Q ss_pred HHH
Q 015875 359 GMF 361 (399)
Q Consensus 359 ~~~ 361 (399)
..+
T Consensus 226 rD~ 228 (233)
T PF05496_consen 226 RDF 228 (233)
T ss_dssp CCC
T ss_pred HHH
Confidence 443
No 45
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.4e-22 Score=186.80 Aligned_cols=243 Identities=24% Similarity=0.309 Sum_probs=183.7
Q ss_pred CccccccCcHHHHHHHHHHHhcCCCChhHHHhhC-CCCCCceeEeCCCCCcHHHHHHHHHHhcC---------CceEEEe
Q 015875 138 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG-IDPPKGVLCYGPPGTGKTLLARAVANRTD---------ACFIRVI 207 (399)
Q Consensus 138 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g-~~~~~~vLL~GppGtGKT~larala~~~~---------~~~i~v~ 207 (399)
--|+.++--...++++..++...+...+.-.+-. +...+-+|||||||||||+|+|++|+++. ..++.++
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 3456677778889998888765443322211111 23456799999999999999999999763 4579999
Q ss_pred ccchhhhhhchhHHHHHHHHHHHHc-----CCCEEEEEecCCcccCCccC-CCCCCChHHHHHHHHHHHHhcCCCCCCCe
Q 015875 208 GSELVQKYVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFD-DGVGGDNEVQRTMLEIVNQLDGFDARGNI 281 (399)
Q Consensus 208 ~s~l~~~~~g~~~~~v~~~f~~a~~-----~~p~il~iDEiD~l~~~r~~-~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 281 (399)
+..++++|.+++.+.+..+|++..+ ..--.++|||+++++..|.. .+...+.+..+....+|.++|.+...+||
T Consensus 219 shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nv 298 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNV 298 (423)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCE
Confidence 9999999999999999999998764 22235669999999988843 33445667788899999999999999999
Q ss_pred EEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-------------C-----cccHHHHHH-H
Q 015875 282 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-------------R-----DIRFELLAR-L 342 (399)
Q Consensus 282 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-------------~-----~~~~~~la~-~ 342 (399)
++++|+|-.+.+|.|+.. |-|-+..+.+|+...|.+|++.++..+-.. . +.....+.. .
T Consensus 299 liL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~ 376 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELS 376 (423)
T ss_pred EEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHh
Confidence 999999999999999998 999999999999999999999887543110 0 011122232 3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 015875 343 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIK 384 (399)
Q Consensus 343 ~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~ 384 (399)
+.|.|||-|+.+=-.|...- -....|+.++|..|+-...+
T Consensus 377 ~~gLSGRtlrkLP~Laha~y--~~~~~v~~~~fl~al~ea~~ 416 (423)
T KOG0744|consen 377 TVGLSGRTLRKLPLLAHAEY--FRTFTVDLSNFLLALLEAAK 416 (423)
T ss_pred hcCCccchHhhhhHHHHHhc--cCCCccChHHHHHHHHHHHH
Confidence 47999999988765443322 24468999999998776644
No 46
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-20 Score=192.72 Aligned_cols=244 Identities=20% Similarity=0.308 Sum_probs=195.5
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHH
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGAR 221 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~ 221 (399)
..-+.+..+..+..++.- .+.|. ..++.-...+||+|+||||||++++++|.+++.+++.++|.++.....+..+.
T Consensus 402 ~~~~~~~~~~~l~~vl~p-~~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~et 477 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSP-QKQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTET 477 (953)
T ss_pred CCccchHHHHHHHHHhCc-ccCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHH
Confidence 345566666655555532 33322 11233445799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC-CCCCCeEEEEecCCCCCCCccccCC
Q 015875 222 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF-DARGNIKVLMATNRPDTLDPALLRP 300 (399)
Q Consensus 222 ~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~-~~~~~v~vI~atn~~~~ld~al~r~ 300 (399)
.+...|.+|+...|+|||+-++|.++.++.. +.+...+..+-.++. .+.+ .....++||++|+..+.+++.+++
T Consensus 478 kl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~- 552 (953)
T KOG0736|consen 478 KLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS- 552 (953)
T ss_pred HHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH-
Confidence 9999999999999999999999999854322 334444444444444 2323 256789999999999999999998
Q ss_pred CCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHH---HHc-----------
Q 015875 301 GRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAI---RAR----------- 366 (399)
Q Consensus 301 gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~---~~~----------- 366 (399)
.|-..|.++.|+.++|.+||+.++....+..++....++..|.||+.+++.+++..+-..+. .+.
T Consensus 553 -~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~ 631 (953)
T KOG0736|consen 553 -LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDE 631 (953)
T ss_pred -hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccc
Confidence 88889999999999999999999999999999999999999999999999988766622221 111
Q ss_pred ------CCCccHHHHHHHHHHHHhhccccCCCCcc
Q 015875 367 ------RKTVTEKDFLDAVNKVIKGYQKFSATPKY 395 (399)
Q Consensus 367 ------~~~It~ed~~~ai~~v~~~~~~~~~~~~~ 395 (399)
...++++||.+|+.+..+.+++..++||.
T Consensus 632 ~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKI 666 (953)
T KOG0736|consen 632 GELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKI 666 (953)
T ss_pred cccccccceecHHHHHHHHHHHHHhhhhhcCCCCC
Confidence 25699999999999999999999999774
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.86 E-value=3.2e-20 Score=181.81 Aligned_cols=220 Identities=19% Similarity=0.205 Sum_probs=166.0
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
....+.+|++++|+++.++.+..++..... .-.++.++|||||||||||++|+++|++++..+..++++.+.
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~ 88 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE 88 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc
Confidence 345677999999999999999988864211 124567899999999999999999999999888777665432
Q ss_pred hhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcC-------CC------CCC
Q 015875 213 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG-------FD------ARG 279 (399)
Q Consensus 213 ~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~-------~~------~~~ 279 (399)
. ...+..++... ..+++|||||||.+ +...+..+..+++.... .. ...
T Consensus 89 ~------~~~l~~~l~~l--~~~~vl~IDEi~~l-----------~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 89 K------PGDLAAILTNL--EEGDVLFIDEIHRL-----------SPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred C------hHHHHHHHHhc--ccCCEEEEecHhhc-----------chHHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 1 12233334332 34679999999999 34455556666654210 00 113
Q ss_pred CeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHH
Q 015875 280 NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEA 358 (399)
Q Consensus 280 ~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A 358 (399)
++.+|++||++..+++++++ ||...+.|+.|+.+++.+|++......+.. .+...+.|+..+.| +++.+..++..+
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~ 226 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRV 226 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHH
Confidence 47789999999999999988 998899999999999999999888776553 22336788888877 557888999988
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHH
Q 015875 359 GMFAIRARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 359 ~~~A~~~~~~~It~ed~~~ai~~v 382 (399)
..+|...+...|+.+++..+++.+
T Consensus 227 ~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 227 RDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHh
Confidence 888877777789999999999775
No 48
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.9e-20 Score=180.40 Aligned_cols=207 Identities=27% Similarity=0.377 Sum_probs=155.9
Q ss_pred ecCCCCccccccCcHHHHH---HHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEecc
Q 015875 133 EEKPDVTYNDVGGCKEQIE---KMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 209 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~---~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s 209 (399)
..-.|.++++++|++..+. -|+++++. ....+++||||||||||++|+.||..++..|..+++.
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 3446789999999999874 46666664 2344799999999999999999999999999999874
Q ss_pred chhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 015875 210 ELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 285 (399)
Q Consensus 210 ~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ 285 (399)
. .+-+.++.+++.++. ....|||+||||++ +...|..|+..++ ++.+++|+
T Consensus 83 ~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----------nK~QQD~lLp~vE-------~G~iilIG 137 (436)
T COG2256 83 T-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----------NKAQQDALLPHVE-------NGTIILIG 137 (436)
T ss_pred c-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----------Chhhhhhhhhhhc-------CCeEEEEe
Confidence 3 345667888888854 23469999999999 6778888888776 57788888
Q ss_pred ec--CCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhc--cCCC------CcccHHHHHHHCCCCcHHHHHHHH
Q 015875 286 AT--NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT--MNCE------RDIRFELLARLCPNSTGADIRSVC 355 (399)
Q Consensus 286 at--n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~--~~~~------~~~~~~~la~~~~g~sg~di~~l~ 355 (399)
|| |+.-.+.++|++ |+ ++++|.+.+.++...+++..+.. .++. .+...+.++..+.| |.|.++
T Consensus 138 ATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aL 210 (436)
T COG2256 138 ATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRAL 210 (436)
T ss_pred ccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHH
Confidence 77 666889999999 88 89999999999999999884322 2222 12234556666655 888888
Q ss_pred HHHHHHHHHHcCC-CccHHHHHHHHHHHHh
Q 015875 356 TEAGMFAIRARRK-TVTEKDFLDAVNKVIK 384 (399)
Q Consensus 356 ~~A~~~A~~~~~~-~It~ed~~~ai~~v~~ 384 (399)
+...+.+...... .++.+++.+.+.+...
T Consensus 211 N~LE~~~~~~~~~~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 211 NLLELAALSAEPDEVLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHHHHhcCCCcccCHHHHHHHHhhhhh
Confidence 8777766554332 3457888877776544
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.85 E-value=8.9e-20 Score=176.73 Aligned_cols=214 Identities=19% Similarity=0.224 Sum_probs=158.3
Q ss_pred ccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhch
Q 015875 139 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGE 218 (399)
Q Consensus 139 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~ 218 (399)
+|++++|+++++++|+.++...... -..+.+++|+||||||||++|+++|++++..+..+.++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 6889999999999999988642211 234567999999999999999999999988876665543221
Q ss_pred hHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC-------------CCCCCeEEEE
Q 015875 219 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF-------------DARGNIKVLM 285 (399)
Q Consensus 219 ~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~-------------~~~~~v~vI~ 285 (399)
...+...+... ..+.+|||||+|.+ +...+..+..+++..... .....+.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l-----------~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRL-----------SPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhh-----------CHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11122222222 34569999999999 445566666666543210 0123478899
Q ss_pred ecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHH
Q 015875 286 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 364 (399)
Q Consensus 286 atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~ 364 (399)
+||++..+++++++ ||...+.|++|+.+++.++++..+...+.. .+...+.++..+.| .++.+..+|..+...|..
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~ 211 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQV 211 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHH
Confidence 99999999999998 998899999999999999999888765443 22335678888877 447788889888878776
Q ss_pred HcCCCccHHHHHHHHHHH
Q 015875 365 ARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 365 ~~~~~It~ed~~~ai~~v 382 (399)
.+...|+.+++..++...
T Consensus 212 ~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 212 RGQKIINRDIALKALEML 229 (305)
T ss_pred cCCCCcCHHHHHHHHHHh
Confidence 677779999999998874
No 50
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.1e-20 Score=187.46 Aligned_cols=232 Identities=19% Similarity=0.217 Sum_probs=180.9
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEeccchhhhhh
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKYV 216 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~s~l~~~~~ 216 (399)
.|++-....+++..+....| +..+.++||+||+|||||.|+++++++. -+.+..++|+.+.....
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 44555555555544432222 3446689999999999999999999976 45678899999988888
Q ss_pred chhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHh-cCC-CCCCCeEEEEecCCCCCCC
Q 015875 217 GEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL-DGF-DARGNIKVLMATNRPDTLD 294 (399)
Q Consensus 217 g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l-~~~-~~~~~v~vI~atn~~~~ld 294 (399)
......++.+|..+.+++|+||++|++|.|++.. +...+.+......+..+++++ ..+ ..+..+.+|++.+....++
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s-~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS-SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC-cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 8888899999999999999999999999998832 222333444555555666543 222 2344578999999999999
Q ss_pred ccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHc----CCC
Q 015875 295 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR----RKT 369 (399)
Q Consensus 295 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~----~~~ 369 (399)
|.|.+|++|+.++.++.|+..+|.+||+..+++.... ..-+++.++..|+||...|+..++.+|...|++.. ...
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kl 635 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKL 635 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCccc
Confidence 9999999999999999999999999999988775532 22245559999999999999999999999988432 347
Q ss_pred ccHHHHHHHHHHHHh
Q 015875 370 VTEKDFLDAVNKVIK 384 (399)
Q Consensus 370 It~ed~~~ai~~v~~ 384 (399)
+|.++|.++++...+
T Consensus 636 ltke~f~ksL~~F~P 650 (952)
T KOG0735|consen 636 LTKELFEKSLKDFVP 650 (952)
T ss_pred chHHHHHHHHHhcCh
Confidence 999999999998854
No 51
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=2.1e-19 Score=166.05 Aligned_cols=218 Identities=18% Similarity=0.207 Sum_probs=174.2
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 214 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~ 214 (399)
..|.+|++.+|+++++++|.-+|+....+ -...-++|||||||.|||+||+.+|++++..+-..+++-+-
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le-- 89 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE-- 89 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc--
Confidence 45789999999999999999988763332 34566899999999999999999999999998877776552
Q ss_pred hhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc-------CCCC------CCCe
Q 015875 215 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-------GFDA------RGNI 281 (399)
Q Consensus 215 ~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-------~~~~------~~~v 281 (399)
.+.-+-.++... ...+|+||||||++ ++.+.+.|...++.+. +... -..+
T Consensus 90 ----K~gDlaaiLt~L--e~~DVLFIDEIHrl-----------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 90 ----KPGDLAAILTNL--EEGDVLFIDEIHRL-----------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred ----ChhhHHHHHhcC--CcCCeEEEehhhhc-----------ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 222333344333 33469999999999 6777888888877632 1111 2357
Q ss_pred EEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCC-cccHHHHHHHCCCCcHHHHHHHHHHHHH
Q 015875 282 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER-DIRFELLARLCPNSTGADIRSVCTEAGM 360 (399)
Q Consensus 282 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~A~~ 360 (399)
.+|+||.+...+...|+. ||.....+..++.++..+|+......+++.- +.....+|+++.| +|+-...++++...
T Consensus 153 TLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRD 229 (332)
T COG2255 153 TLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRD 229 (332)
T ss_pred eEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHH
Confidence 799999999999999998 9999999999999999999999988887753 3335678888877 88888899999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHH
Q 015875 361 FAIRARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 361 ~A~~~~~~~It~ed~~~ai~~v 382 (399)
+|.-++...|+.+-..+|++..
T Consensus 230 fa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 230 FAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHhcCCcccHHHHHHHHHHh
Confidence 9999999999998888888765
No 52
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.84 E-value=2.8e-20 Score=192.46 Aligned_cols=225 Identities=20% Similarity=0.324 Sum_probs=162.3
Q ss_pred cccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc--------
Q 015875 128 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-------- 199 (399)
Q Consensus 128 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-------- 199 (399)
+..+.+..++.+|++++|++..++.++..+.. ..+.++||+||||||||++|+++++.+
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~ 118 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPF 118 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCc
Confidence 44456778889999999999999999876532 345689999999999999999998642
Q ss_pred --CCceEEEeccch-------hhhhhchhHHHH---HHHH----------HHHHcCCCEEEEEecCCcccCCccCCCCCC
Q 015875 200 --DACFIRVIGSEL-------VQKYVGEGARMV---RELF----------QMARSKKACIVFFDEVDAIGGARFDDGVGG 257 (399)
Q Consensus 200 --~~~~i~v~~s~l-------~~~~~g~~~~~v---~~~f----------~~a~~~~p~il~iDEiD~l~~~r~~~~~~~ 257 (399)
+.+|+.++|... .....+...... ...| ........++|||||||.+
T Consensus 119 ~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L----------- 187 (531)
T TIGR02902 119 KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL----------- 187 (531)
T ss_pred CCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-----------
Confidence 468999998642 111111000000 0000 0111234569999999999
Q ss_pred ChHHHHHHHHHHHHhcCC-----------------------CCCCCeEEEEe-cCCCCCCCccccCCCCceeEEEecCCC
Q 015875 258 DNEVQRTMLEIVNQLDGF-----------------------DARGNIKVLMA-TNRPDTLDPALLRPGRLDRKVEFGLPD 313 (399)
Q Consensus 258 ~~~~~~~l~~ll~~l~~~-----------------------~~~~~v~vI~a-tn~~~~ld~al~r~gRf~~~i~~~~P~ 313 (399)
+...|+.|+++++.-.-+ .-..++++|++ |+.++.+++++++ |+ ..+.|++++
T Consensus 188 ~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~ 264 (531)
T TIGR02902 188 HPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLL 264 (531)
T ss_pred CHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCC
Confidence 889999999998762110 01224566655 4668999999999 88 678999999
Q ss_pred HHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 015875 314 LESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNK 381 (399)
Q Consensus 314 ~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~ 381 (399)
.+++.+|++..+++.++. .+..++.++..+ ++++++.++++.|...|..+++..|+.+|+..++..
T Consensus 265 ~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 265 DEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 999999999999877653 222345555544 378999999999999998888888999999999863
No 53
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.4e-19 Score=173.71 Aligned_cols=237 Identities=23% Similarity=0.333 Sum_probs=166.2
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 214 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~ 214 (399)
.+.-.+++++-......+|+.+...-. + .+..-.|-+++|||||||||||++|+-+|.+.|..+-.+.+.++.-.
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTa-N----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATA-N----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL 423 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhc-c----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc
Confidence 344557788877777777776654311 1 01112344679999999999999999999999998877777665321
Q ss_pred hhchhHHHHHHHHHHHHcCC-CEEEEEecCCcccCCccCCCCCCChHHHH-HHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 015875 215 YVGEGARMVRELFQMARSKK-ACIVFFDEVDAIGGARFDDGVGGDNEVQR-TMLEIVNQLDGFDARGNIKVLMATNRPDT 292 (399)
Q Consensus 215 ~~g~~~~~v~~~f~~a~~~~-p~il~iDEiD~l~~~r~~~~~~~~~~~~~-~l~~ll~~l~~~~~~~~v~vI~atn~~~~ 292 (399)
-.+....+..+|+-++... .-+|||||.|+++-.|... ..++.++ .|..||-. .-+...+++++.+||+|..
T Consensus 424 -G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt---ymSEaqRsaLNAlLfR--TGdqSrdivLvlAtNrpgd 497 (630)
T KOG0742|consen 424 -GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT---YMSEAQRSALNALLFR--TGDQSRDIVLVLATNRPGD 497 (630)
T ss_pred -chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh---hhcHHHHHHHHHHHHH--hcccccceEEEeccCCccc
Confidence 1223456788998887643 4588999999998777432 2334444 34333321 1133557889999999999
Q ss_pred CCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC----C-------------------ccc----HHHHHHHCCC
Q 015875 293 LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE----R-------------------DIR----FELLARLCPN 345 (399)
Q Consensus 293 ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~----~-------------------~~~----~~~la~~~~g 345 (399)
+|.++-. |+|.+++||+|..++|..+|..|+.++-.. . +.+ +...|..|.|
T Consensus 498 lDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeG 575 (630)
T KOG0742|consen 498 LDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEG 575 (630)
T ss_pred hhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccC
Confidence 9999988 999999999999999999999888653311 0 111 3556889999
Q ss_pred CcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 015875 346 STGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIK 384 (399)
Q Consensus 346 ~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~ 384 (399)
|||++|..|+.-....++-...-.++..-|.+.+...+.
T Consensus 576 fSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~ 614 (630)
T KOG0742|consen 576 FSGREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQ 614 (630)
T ss_pred CcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 999999999865555555555666777777776665543
No 54
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.83 E-value=2.2e-19 Score=192.85 Aligned_cols=224 Identities=23% Similarity=0.319 Sum_probs=170.1
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CCce
Q 015875 134 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACF 203 (399)
Q Consensus 134 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~~~ 203 (399)
...+-.+++++|.++.++++.+.+.. ....+++|+||||||||++|+++|+++ +..+
T Consensus 175 ~~r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~ 241 (731)
T TIGR02639 175 KAKNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKI 241 (731)
T ss_pred HHhcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeE
Confidence 34566888999999999998877754 235589999999999999999999986 6789
Q ss_pred EEEeccchh--hhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCe
Q 015875 204 IRVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 281 (399)
Q Consensus 204 i~v~~s~l~--~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 281 (399)
+.++++.+. .+|.|+.+..++.+|+.+....++||||||||.+.+.+.. ++++.+.++.|...+. ++.+
T Consensus 242 ~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~--~~~~~~~~~~L~~~l~-------~g~i 312 (731)
T TIGR02639 242 YSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT--SGGSMDASNLLKPALS-------SGKL 312 (731)
T ss_pred EEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC--CCccHHHHHHHHHHHh-------CCCe
Confidence 999998887 4789999999999999998878899999999999876422 1233455565555443 5789
Q ss_pred EEEEecCCC-----CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccC----C-CCcccHHHHHHHCCCCc----
Q 015875 282 KVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----C-ERDIRFELLARLCPNST---- 347 (399)
Q Consensus 282 ~vI~atn~~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~----~-~~~~~~~~la~~~~g~s---- 347 (399)
.+|++||.. ...|+++.| ||. .|+++.|+.+++.+||+.....+. + -.+..+..++.++..|-
T Consensus 313 ~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~ 389 (731)
T TIGR02639 313 RCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRF 389 (731)
T ss_pred EEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccccc
Confidence 999999863 357999999 995 799999999999999997665422 1 12334566676666553
Q ss_pred -HHHHHHHHHHHHHHHHHH----cCCCccHHHHHHHHHHH
Q 015875 348 -GADIRSVCTEAGMFAIRA----RRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 348 -g~di~~l~~~A~~~A~~~----~~~~It~ed~~~ai~~v 382 (399)
|.-...++.+|......+ ....|+.+|+..++...
T Consensus 390 ~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 390 LPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred CCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHH
Confidence 344456677766543222 13459999999998876
No 55
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7.8e-19 Score=181.23 Aligned_cols=222 Identities=45% Similarity=0.706 Sum_probs=194.5
Q ss_pred cCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEE
Q 015875 159 LPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIV 238 (399)
Q Consensus 159 ~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il 238 (399)
.++.+++.|..+++.++++++++||||+|||++++++++. +..+..+++++...++.|..+...+.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4678899999999999999999999999999999999999 766688899999999999999999999999999999999
Q ss_pred EEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHH
Q 015875 239 FFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRT 318 (399)
Q Consensus 239 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~ 318 (399)
++||+|.+.+.+........ .....+++..++++. ...+.+++.+|++..+++++++++||++.+.++.|+...+.
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~---~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVE---RRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccccccchh---hHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 99999999998866222222 334445555555555 44488888999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHc------CCCccHHHHHHHHHHHHhh
Q 015875 319 QIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR------RKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 319 ~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~------~~~It~ed~~~ai~~v~~~ 385 (399)
+|+..+...+....+.+...++..+.|++++++..+|.++.+.+.++. ...++.+++.++++.+...
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 999999999888878899999999999999999999999999888775 3458999999999998654
No 56
>PRK04195 replication factor C large subunit; Provisional
Probab=99.82 E-value=9.3e-19 Score=179.82 Aligned_cols=213 Identities=27% Similarity=0.341 Sum_probs=154.7
Q ss_pred ccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEec
Q 015875 129 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 208 (399)
Q Consensus 129 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~ 208 (399)
++|++.+.|.++++|+|++.++++|+.++..... | .+++++|||||||||||++|+++|++++..++.+++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielna 72 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 72 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence 4688999999999999999999999999975321 2 347789999999999999999999999999999998
Q ss_pred cchhhhhhchhHHHHHHHHHHHHc------CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeE
Q 015875 209 SELVQKYVGEGARMVRELFQMARS------KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 282 (399)
Q Consensus 209 s~l~~~~~g~~~~~v~~~f~~a~~------~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 282 (399)
++.... ..++.+...+.. ..+.+|+|||+|.+.+. .+......+..+++. .+..
T Consensus 73 sd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~-------~d~~~~~aL~~~l~~-------~~~~ 132 (482)
T PRK04195 73 SDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN-------EDRGGARAILELIKK-------AKQP 132 (482)
T ss_pred cccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc-------cchhHHHHHHHHHHc-------CCCC
Confidence 875422 122222222211 25679999999999542 133445666666552 3345
Q ss_pred EEEecCCCCCCCc-cccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHH
Q 015875 283 VLMATNRPDTLDP-ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGM 360 (399)
Q Consensus 283 vI~atn~~~~ld~-al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~ 360 (399)
+|+++|.+..+.+ .+++ |+ ..|.|+.|+.++...+++..+...++. .+..++.|+..+.| |++.+++....
T Consensus 133 iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~ 205 (482)
T PRK04195 133 IILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQA 205 (482)
T ss_pred EEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 7788898887777 5655 55 789999999999999999888766553 22335666766544 88888887766
Q ss_pred HHHHHcCCCccHHHHHHHH
Q 015875 361 FAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 361 ~A~~~~~~~It~ed~~~ai 379 (399)
++ .+...|+.+++....
T Consensus 206 ~a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 206 IA--EGYGKLTLEDVKTLG 222 (482)
T ss_pred Hh--cCCCCCcHHHHHHhh
Confidence 44 345568888775443
No 57
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.81 E-value=4.1e-19 Score=191.72 Aligned_cols=221 Identities=22% Similarity=0.311 Sum_probs=150.7
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh---------
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV--------- 212 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~--------- 212 (399)
++.|++++++++.+++...... +...+..++|+||||||||++|+++|+.++.+|+++++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 4899999999999987643221 112334799999999999999999999999999999875432
Q ss_pred hhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHh--cCCC--------CCCCeE
Q 015875 213 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL--DGFD--------ARGNIK 282 (399)
Q Consensus 213 ~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l--~~~~--------~~~~v~ 282 (399)
..|.|...+.+.+.|..+....| ||||||||.+.+.. ..+....|+++++.. ..+. ...+++
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~-------~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF-------RGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc-------CCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 24567767777778887766666 89999999997532 112345677766531 1111 125789
Q ss_pred EEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHh-----ccCCC---CcccHHHHHHHCCCC----cHH-
Q 015875 283 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR-----TMNCE---RDIRFELLARLCPNS----TGA- 349 (399)
Q Consensus 283 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~-----~~~~~---~~~~~~~la~~~~g~----sg~- 349 (399)
+|+|||.++.+++++++ || ..|+|+.|+.+++.+|++.++. ..++. -.++.+.+.....+| ..+
T Consensus 466 ~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~ 542 (775)
T TIGR00763 466 FIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRN 542 (775)
T ss_pred EEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChH
Confidence 99999999999999999 99 5899999999999999988762 22221 123333333322233 224
Q ss_pred ---HHHHHHHHHHHHHHHHcC--------CCccHHHHHHHHH
Q 015875 350 ---DIRSVCTEAGMFAIRARR--------KTVTEKDFLDAVN 380 (399)
Q Consensus 350 ---di~~l~~~A~~~A~~~~~--------~~It~ed~~~ai~ 380 (399)
.+..+|+.+.......+. -.|+.+++..-+.
T Consensus 543 l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 543 LERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 445566665443332121 3688887776654
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.2e-18 Score=175.11 Aligned_cols=207 Identities=18% Similarity=0.248 Sum_probs=152.2
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc--------
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 202 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~-------- 202 (399)
+.+++.|.+|++++|++.++..|+.++.. + +.+..+||+||+|||||++|+.+|+.+++.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC 75 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC 75 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc
Confidence 34568899999999999999999999875 1 234569999999999999999999988763
Q ss_pred ----------------eEEEeccchhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHH
Q 015875 203 ----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 262 (399)
Q Consensus 203 ----------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~ 262 (399)
++.+++.. ..+...++++.+.+. .....|+||||+|.+ +.+.+
T Consensus 76 g~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------s~~A~ 138 (484)
T PRK14956 76 NECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------TDQSF 138 (484)
T ss_pred CCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------CHHHH
Confidence 22222210 112233454444433 345569999999999 67778
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHH
Q 015875 263 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 341 (399)
Q Consensus 263 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~ 341 (399)
+.|+..+++ +..++++|++|+.+..+.+++++ |+ ..+.|..++.++..+.++..+...++. .+..+..|+.
T Consensus 139 NALLKtLEE-----Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~ 210 (484)
T PRK14956 139 NALLKTLEE-----PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAK 210 (484)
T ss_pred HHHHHHhhc-----CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 888777764 45688899999999999999999 98 789999999999999898888766543 3334677888
Q ss_pred HCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 342 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 342 ~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
.+.| +.|+..+++..+...+ ...||.+++.+.+
T Consensus 211 ~S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 211 KGDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HcCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 7776 5667777776655432 3358888776644
No 59
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.81 E-value=4.1e-18 Score=167.06 Aligned_cols=214 Identities=20% Similarity=0.296 Sum_probs=151.0
Q ss_pred ccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC-----Cce
Q 015875 129 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACF 203 (399)
Q Consensus 129 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~-----~~~ 203 (399)
++|.+++.|.+|++++|++.+++.|..++.. ....++||+||||||||++|+++++++. .++
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~ 69 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNF 69 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccce
Confidence 4788899999999999999999999998864 1223699999999999999999999873 356
Q ss_pred EEEeccchhhhh-------------hch-------hHHHHHHHHHHHHc-----CCCEEEEEecCCcccCCccCCCCCCC
Q 015875 204 IRVIGSELVQKY-------------VGE-------GARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGD 258 (399)
Q Consensus 204 i~v~~s~l~~~~-------------~g~-------~~~~v~~~f~~a~~-----~~p~il~iDEiD~l~~~r~~~~~~~~ 258 (399)
+.++++++.... .+. ....++.+...... ..+.+|+|||+|.+ +
T Consensus 70 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-----------~ 138 (337)
T PRK12402 70 TEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-----------R 138 (337)
T ss_pred EEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-----------C
Confidence 788887754221 011 11223333322222 23469999999998 4
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHH
Q 015875 259 NEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFE 337 (399)
Q Consensus 259 ~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~ 337 (399)
...+..|..+++.. ...+.+|++++.+..+.+.+.+ |+ ..++|++|+.++...+++..+...++. .+..++
T Consensus 139 ~~~~~~L~~~le~~-----~~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~ 210 (337)
T PRK12402 139 EDAQQALRRIMEQY-----SRTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLE 210 (337)
T ss_pred HHHHHHHHHHHHhc-----cCCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 55677777777643 2334566677667777788887 76 679999999999999999888776653 233456
Q ss_pred HHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 015875 338 LLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 338 ~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~ 380 (399)
.|+..+.| +++.+++.+...+. ....||.+++.+++.
T Consensus 211 ~l~~~~~g----dlr~l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 211 LIAYYAGG----DLRKAILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred HHHHHcCC----CHHHHHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 66766643 66666666665552 334799999887765
No 60
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.81 E-value=9.3e-19 Score=186.47 Aligned_cols=223 Identities=25% Similarity=0.342 Sum_probs=165.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CCceE
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFI 204 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~~~i 204 (399)
...-.++.++|.++.++++.+++.. ....++||+||||||||++|+++|... ++.++
T Consensus 180 a~~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~ 246 (758)
T PRK11034 180 ARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_pred HHcCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEE
Confidence 3455667899999999999998765 234578999999999999999999864 55666
Q ss_pred EEeccchh--hhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeE
Q 015875 205 RVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 282 (399)
Q Consensus 205 ~v~~s~l~--~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 282 (399)
.++...+. .+|.|+.+..++.++..+....++||||||||.+++.+.. +++..+..+.|..++. ++.+.
T Consensus 247 ~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L~-------~g~i~ 317 (758)
T PRK11034 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLLS-------SGKIR 317 (758)
T ss_pred eccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHHh-------CCCeE
Confidence 66666665 4678899999999999888888899999999999876522 1223344444444443 67899
Q ss_pred EEEecCCCC-----CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCccc-----HHHHHHHCC-----CCc
Q 015875 283 VLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIR-----FELLARLCP-----NST 347 (399)
Q Consensus 283 vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~-----~~~la~~~~-----g~s 347 (399)
||++|+.++ ..|++|.| || ..|.++.|+.+++..||+.+...+....++. +...+.++. .+-
T Consensus 318 vIgATt~~E~~~~~~~D~AL~r--RF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~l 394 (758)
T PRK11034 318 VIGSTTYQEFSNIFEKDRALAR--RF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHL 394 (758)
T ss_pred EEecCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccC
Confidence 999999753 57999999 99 5899999999999999998876655443333 233333333 345
Q ss_pred HHHHHHHHHHHHHHHH----HHcCCCccHHHHHHHHHHH
Q 015875 348 GADIRSVCTEAGMFAI----RARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 348 g~di~~l~~~A~~~A~----~~~~~~It~ed~~~ai~~v 382 (399)
|.....++.+|+.... ......|+.+|+.+.+...
T Consensus 395 PdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 395 PDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_pred hHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHH
Confidence 5688889998876442 2234568889988887665
No 61
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=2.2e-18 Score=179.32 Aligned_cols=204 Identities=17% Similarity=0.220 Sum_probs=150.5
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc---------
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 202 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~--------- 202 (399)
.+++.+.+|++|+|++.+++.|+.++.. -+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 7 arKYRPqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 4568899999999999999999999874 1345578999999999999999999988652
Q ss_pred ---------------eEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHH
Q 015875 203 ---------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 263 (399)
Q Consensus 203 ---------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~ 263 (399)
++.++.+. ..+-..++++++.+.. ....|+||||+|.| +...++
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------T~~A~N 137 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------TNHAFN 137 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------CHHHHH
Confidence 22222211 1122345555555432 34569999999999 566788
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHH
Q 015875 264 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 342 (399)
Q Consensus 264 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~ 342 (399)
.|+..|++ ...++++|++||.+..|.+.+++ || ..+.|..++.++..+.|+..+...++. .+..+..|+..
T Consensus 138 ALLKtLEE-----PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~ 209 (830)
T PRK07003 138 AMLKTLEE-----PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARA 209 (830)
T ss_pred HHHHHHHh-----cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888875 34578899999999999999999 99 899999999999999998888765543 23346677788
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHH
Q 015875 343 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLD 377 (399)
Q Consensus 343 ~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ 377 (399)
+.| +.++..+++..+..+. ...|+.+++..
T Consensus 210 A~G-smRdALsLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 210 AQG-SMRDALSLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred cCC-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 877 5667777776665432 23455555443
No 62
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.80 E-value=1.4e-19 Score=180.71 Aligned_cols=218 Identities=20% Similarity=0.297 Sum_probs=159.8
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccc
Q 015875 134 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE 210 (399)
Q Consensus 134 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~ 210 (399)
.....+|++|+|.++++.++.+.+.. ..+.+..|||.|++||||.++|++|++.. +.||+.+||..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 34567899999999999999988876 45678899999999999999999999965 78999999944
Q ss_pred ---------hhhhhhchhHHHHH----HHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHh--cCC
Q 015875 211 ---------LVQKYVGEGARMVR----ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL--DGF 275 (399)
Q Consensus 211 ---------l~~~~~g~~~~~v~----~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l--~~~ 275 (399)
|++.-.|.+.+..+ .+|+.|.. +.||||||..| +..+|..|+++|++- ..+
T Consensus 307 iPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----------pl~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 307 IPETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred CCHHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----------CHHHHHHHHHHHhhceEEec
Confidence 44444455444433 35665544 49999999999 899999999999873 222
Q ss_pred CC----CCCeEEEEecCCC--CCCCccccCCCCcee--EEEecCCCHHHHHH--------HHHHHHhccCCC-CcccHHH
Q 015875 276 DA----RGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ--------IFKIHTRTMNCE-RDIRFEL 338 (399)
Q Consensus 276 ~~----~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~--------Il~~~~~~~~~~-~~~~~~~ 338 (399)
.. ..+|+||+|||+. +.+...-+|.+.|+| ++.+..|++++|.+ ++..+.+.++.. ..+..+.
T Consensus 373 G~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a 452 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDA 452 (560)
T ss_pred CCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHH
Confidence 22 2379999999984 556666677777777 88888999999988 333444444433 4577788
Q ss_pred HHHHCCCCcHHHHHHHHHHHHHHHH-HHcCCCccHHHHH
Q 015875 339 LARLCPNSTGADIRSVCTEAGMFAI-RARRKTVTEKDFL 376 (399)
Q Consensus 339 la~~~~g~sg~di~~l~~~A~~~A~-~~~~~~It~ed~~ 376 (399)
++.+....||+++|.+-+....... ......|+.+|+-
T Consensus 453 ~~~L~~y~WPGNVRELeNviER~v~~~~~~~~I~~~~lp 491 (560)
T COG3829 453 LALLLRYDWPGNVRELENVIERAVNLVESDGLIDADDLP 491 (560)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHhccCCcceeehhhcc
Confidence 8888777777666665555444432 3344557777765
No 63
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=2.5e-18 Score=174.88 Aligned_cols=207 Identities=17% Similarity=0.234 Sum_probs=145.4
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC-----------
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA----------- 201 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~----------- 201 (399)
+..+|.+|++++|++.+++.|+..+... ..+.++|||||||||||++|+++|+.+++
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 5678999999999999999999888651 34567999999999999999999998765
Q ss_pred -------------ceEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHH
Q 015875 202 -------------CFIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRT 264 (399)
Q Consensus 202 -------------~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~ 264 (399)
.++.++++. ..+-..++.+.+.+.. ....+|||||+|.+ ..+.+..
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-----------t~~a~~~ 136 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-----------TKEAFNA 136 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh-----------HHHHHHH
Confidence 244444321 1122334555444432 34569999999999 4455666
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHC
Q 015875 265 MLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLC 343 (399)
Q Consensus 265 l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~ 343 (399)
|+..++. ..+.+++|++|+.+..+++++++ |+ ..++|.+|+.++...+++..+...++. .+..++.|+..+
T Consensus 137 LLk~LE~-----p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s 208 (472)
T PRK14962 137 LLKTLEE-----PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRA 208 (472)
T ss_pred HHHHHHh-----CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 6666553 34567788888788899999999 88 689999999999999999888665542 233356777776
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 015875 344 PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNK 381 (399)
Q Consensus 344 ~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~ 381 (399)
.| ..+.+.+.+..+..+ ....||.+++.+++..
T Consensus 209 ~G-dlR~aln~Le~l~~~----~~~~It~e~V~~~l~~ 241 (472)
T PRK14962 209 SG-GLRDALTMLEQVWKF----SEGKITLETVHEALGL 241 (472)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHcC
Confidence 55 333444444333322 2234999999887753
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=99.80 E-value=3.4e-18 Score=166.78 Aligned_cols=204 Identities=16% Similarity=0.189 Sum_probs=145.5
Q ss_pred cceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC-----CceE
Q 015875 130 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACFI 204 (399)
Q Consensus 130 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~-----~~~i 204 (399)
.|++++.|.++++++|++++++.|+.++.. ....++|||||||||||++|+++|+++. ..++
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 68 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVL 68 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCcccee
Confidence 477889999999999999999999988764 1123699999999999999999999873 2356
Q ss_pred EEeccchhhhhhchhHHHHHHHHHHH-H------cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 015875 205 RVIGSELVQKYVGEGARMVRELFQMA-R------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 277 (399)
Q Consensus 205 ~v~~s~l~~~~~g~~~~~v~~~f~~a-~------~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 277 (399)
.+++++..+ ...++...... . ...+.+++|||+|.+ ....|..|...++..
T Consensus 69 eln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-----------t~~aq~aL~~~lE~~----- 126 (319)
T PLN03025 69 ELNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-----------TSGAQQALRRTMEIY----- 126 (319)
T ss_pred eeccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-----------CHHHHHHHHHHHhcc-----
Confidence 666655322 11233332221 1 134579999999999 566788888777642
Q ss_pred CCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHH
Q 015875 278 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCT 356 (399)
Q Consensus 278 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~ 356 (399)
...+.+|++||.+..+.+++++ |+ ..++|+.|+.++....++..+++.++. .+..++.++..+.| |++.+++
T Consensus 127 ~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln 199 (319)
T PLN03025 127 SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALN 199 (319)
T ss_pred cCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHH
Confidence 2345678888888888899998 87 689999999999999999888766543 23345666666654 6666655
Q ss_pred HHHHHHHHHcCCCccHHHHHH
Q 015875 357 EAGMFAIRARRKTVTEKDFLD 377 (399)
Q Consensus 357 ~A~~~A~~~~~~~It~ed~~~ 377 (399)
.....+. +...||.+++.+
T Consensus 200 ~Lq~~~~--~~~~i~~~~v~~ 218 (319)
T PLN03025 200 NLQATHS--GFGFVNQENVFK 218 (319)
T ss_pred HHHHHHh--cCCCCCHHHHHH
Confidence 5543222 344677777654
No 65
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.3e-18 Score=178.91 Aligned_cols=204 Identities=17% Similarity=0.237 Sum_probs=149.3
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc---------
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 202 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~--------- 202 (399)
..++.+.+|++|+|++.+++.|++++... +.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~ 74 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT 74 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence 45688999999999999999999998751 345578999999999999999999988761
Q ss_pred --------------------eEEEeccchhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCC
Q 015875 203 --------------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGD 258 (399)
Q Consensus 203 --------------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~ 258 (399)
++.++... ..+-..++++.+.+. .....|+||||+|.| +
T Consensus 75 ~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-----------s 137 (700)
T PRK12323 75 AQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-----------T 137 (700)
T ss_pred CCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-----------C
Confidence 22222211 112334555555443 344579999999999 5
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCC-cccHH
Q 015875 259 NEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER-DIRFE 337 (399)
Q Consensus 259 ~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~-~~~~~ 337 (399)
...++.|+..|++ ...++++|++||.+..|.+.+++ || ..+.|..++.++..+.++..+...++.- +..+.
T Consensus 138 ~~AaNALLKTLEE-----PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~ 209 (700)
T PRK12323 138 NHAFNAMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALR 209 (700)
T ss_pred HHHHHHHHHhhcc-----CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6677777777664 45678899999999999999999 98 8999999999999998887776555432 22356
Q ss_pred HHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHH
Q 015875 338 LLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLD 377 (399)
Q Consensus 338 ~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ 377 (399)
.|+..+.| +.++..+++..+..+. ...||.+++.+
T Consensus 210 ~IA~~A~G-s~RdALsLLdQaia~~----~~~It~~~V~~ 244 (700)
T PRK12323 210 LLAQAAQG-SMRDALSLTDQAIAYS----AGNVSEEAVRG 244 (700)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 67777766 7778888887665432 23465554443
No 66
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.79 E-value=6.3e-18 Score=170.49 Aligned_cols=205 Identities=28% Similarity=0.382 Sum_probs=147.5
Q ss_pred eecCCCCccccccCcHHHHHH---HHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEec
Q 015875 132 VEEKPDVTYNDVGGCKEQIEK---MREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 208 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~---l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~ 208 (399)
.+..+|.++++++|++..+.. |++++.. ....+++|+||||||||++|+++|+.++..|+.+++
T Consensus 3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 3 AERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred hhhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 455778899999999999777 8888764 234479999999999999999999999999999987
Q ss_pred cchhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 015875 209 SELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 284 (399)
Q Consensus 209 s~l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI 284 (399)
... +...++.+++.+. .....+|||||+|.+ ....+..|+..++ .+.+++|
T Consensus 70 ~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-----------~~~~q~~LL~~le-------~~~iilI 124 (413)
T PRK13342 70 VTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRF-----------NKAQQDALLPHVE-------DGTITLI 124 (413)
T ss_pred ccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhh-----------CHHHHHHHHHHhh-------cCcEEEE
Confidence 643 1223444444442 335679999999998 5667777777665 2456677
Q ss_pred Eec--CCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccC--C-C-CcccHHHHHHHCCCCcHHHHHHHHHHH
Q 015875 285 MAT--NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN--C-E-RDIRFELLARLCPNSTGADIRSVCTEA 358 (399)
Q Consensus 285 ~at--n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~--~-~-~~~~~~~la~~~~g~sg~di~~l~~~A 358 (399)
++| |....+++++++ || ..+.|++++.++...+++..+.... . . .+..++.++..+.| ..+.+.+++..+
T Consensus 125 ~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~ 200 (413)
T PRK13342 125 GATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELA 200 (413)
T ss_pred EeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 665 334578999999 88 8899999999999999988765421 1 1 12224566776644 444555555444
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 359 GMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 359 ~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
... ...|+.+++..++....
T Consensus 201 ~~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 201 ALG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred HHc-----cCCCCHHHHHHHHhhhh
Confidence 332 55699999998887653
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=6.8e-18 Score=167.43 Aligned_cols=207 Identities=17% Similarity=0.234 Sum_probs=150.2
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc---------
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 202 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~--------- 202 (399)
.+++.|.+|++|+|++.+++.++..+.. | +.+..+||+||||+|||++|+++|+.+.+.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4567889999999999999999998864 1 345578999999999999999999987642
Q ss_pred ---------------eEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHH
Q 015875 203 ---------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 263 (399)
Q Consensus 203 ---------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~ 263 (399)
++.++++. ......++.+.+.+.. ....|++|||+|.+ +...++
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----------~~~a~n 137 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----------SRHSFN 137 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----------CHHHHH
Confidence 11121110 0122345555554432 23469999999999 555667
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHH
Q 015875 264 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 342 (399)
Q Consensus 264 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~ 342 (399)
.++..+++ +..++.+|++|+.++.+.+++++ |+ ..++|++|+.++..++++..++..+.. .+..++.++..
T Consensus 138 aLLk~lEe-----~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~ 209 (363)
T PRK14961 138 ALLKTLEE-----PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYH 209 (363)
T ss_pred HHHHHHhc-----CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77777664 34567788888888889999988 88 789999999999999999888776542 23345667777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 015875 343 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 343 ~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~ 380 (399)
+.| +++++.+++..+..+ +...||.+++.+++.
T Consensus 210 s~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 210 AHG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 765 666777777665433 456789988887654
No 68
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=6e-18 Score=174.51 Aligned_cols=206 Identities=17% Similarity=0.201 Sum_probs=152.3
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc---------
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 202 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~--------- 202 (399)
..+++|.+|++|+|++.+++.|+.++.. -+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 3567889999999999999999999874 1345688999999999999999999988652
Q ss_pred ---------------eEEEeccchhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHH
Q 015875 203 ---------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQR 263 (399)
Q Consensus 203 ---------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~ 263 (399)
++.++++.- .+...+|++...+. .....|+||||+|.| +...++
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------S~~A~N 136 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------STHSFN 136 (702)
T ss_pred cCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------CHHHHH
Confidence 233333211 12334555555442 234579999999999 666777
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHH
Q 015875 264 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 342 (399)
Q Consensus 264 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~ 342 (399)
.|+..+++ ....+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+.+.++. ....+..|+..
T Consensus 137 ALLKtLEE-----PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~ 208 (702)
T PRK14960 137 ALLKTLEE-----PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES 208 (702)
T ss_pred HHHHHHhc-----CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88877774 34567788888888888889887 88 789999999999999998888776553 23346677877
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 343 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 343 ~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
+.| +.+++.+++..+..+ +...||.+++...+
T Consensus 209 S~G-dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 209 AQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 765 667777777665533 35568888876643
No 69
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=7.8e-18 Score=175.55 Aligned_cols=207 Identities=21% Similarity=0.272 Sum_probs=152.2
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc---------
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 202 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~--------- 202 (399)
.+++.+.+|++|+|++.+++.|+..+.. | +.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG 74 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence 3457889999999999999999999875 1 234568999999999999999999988663
Q ss_pred ---------------eEEEeccchhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHH
Q 015875 203 ---------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQR 263 (399)
Q Consensus 203 ---------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~ 263 (399)
++.+++.. ..+-..++++.+.+. .+...|+||||+|.| +...++
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~~a~N 137 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFN 137 (647)
T ss_pred CCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CHHHHH
Confidence 22232221 012233455444433 345569999999999 677888
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHH
Q 015875 264 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 342 (399)
Q Consensus 264 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~ 342 (399)
.|+..|++ +.+++++|++|+.+..|.+.+++ |+ ..+.|..++.++....|+..+...++. .+..+..|+..
T Consensus 138 ALLKtLEE-----Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~ 209 (647)
T PRK07994 138 ALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARA 209 (647)
T ss_pred HHHHHHHc-----CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888885 45678888889899999999999 87 899999999999999998887655543 22345677777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 015875 343 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 343 ~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~ 380 (399)
+.| +.+++.+++..|... +...|+.+++...+.
T Consensus 210 s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~lg 242 (647)
T PRK07994 210 ADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAMLG 242 (647)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 766 667888887766433 334477766665543
No 70
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=3.9e-18 Score=175.15 Aligned_cols=209 Identities=16% Similarity=0.195 Sum_probs=154.2
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc--------
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 202 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~-------- 202 (399)
+.+++.|.+|++|+|++.+++.|+.++.. -..+..+||+||+|||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 73 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC 73 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence 35678899999999999999999999965 1345578999999999999999999988653
Q ss_pred ----------------eEEEeccchhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHH
Q 015875 203 ----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 262 (399)
Q Consensus 203 ----------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~ 262 (399)
++.++++. ..+-..++++.+.+. .....|++|||+|.| +.+.+
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-----------s~~a~ 136 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-----------SGHSF 136 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-----------CHHHH
Confidence 34444321 112333555555443 234569999999999 56677
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHH
Q 015875 263 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 341 (399)
Q Consensus 263 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~ 341 (399)
+.|+..|++ ...++.+|++|+.+..+.+.+++ |+ ..++|..++.++....++..++..++. .+..+..++.
T Consensus 137 naLLk~LEe-----pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~ 208 (509)
T PRK14958 137 NALLKTLEE-----PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLAR 208 (509)
T ss_pred HHHHHHHhc-----cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777777775 34568888888888888888988 88 788999999999888888888766653 2334567777
Q ss_pred HCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 015875 342 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNK 381 (399)
Q Consensus 342 ~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~ 381 (399)
.+.| +.+++.+++..+..+ +...||.+++...+..
T Consensus 209 ~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~lg~ 243 (509)
T PRK14958 209 AANG-SVRDALSLLDQSIAY----GNGKVLIADVKTMLGT 243 (509)
T ss_pred HcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHHCC
Confidence 7755 777888888776443 3456888887766543
No 71
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.78 E-value=1.4e-17 Score=162.25 Aligned_cols=211 Identities=19% Similarity=0.275 Sum_probs=145.0
Q ss_pred cccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 128 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 128 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
..+|.++++|.++++++|++.+++.++.++.. | ..|..+||+||||+|||++|+++++..+..++.++
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~ 75 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVN 75 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEec
Confidence 35788999999999999999999999999863 1 34556777999999999999999999999999999
Q ss_pred ccchhhhhhchhHHHHHHHHHHHH-cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 015875 208 GSELVQKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 286 (399)
Q Consensus 208 ~s~l~~~~~g~~~~~v~~~f~~a~-~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~a 286 (399)
+++ . . .......+........ ...+.+|+|||+|.+. ..+.+..+..+++.. ..++.+|++
T Consensus 76 ~~~-~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~le~~-----~~~~~~Ilt 137 (316)
T PHA02544 76 GSD-C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSFMEAY-----SKNCSFIIT 137 (316)
T ss_pred cCc-c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHHHHhc-----CCCceEEEE
Confidence 876 2 1 1111121222211111 1356799999999882 344566676666643 356778999
Q ss_pred cCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccC-----CCCccc---HHHHHHHCCCCcHHHHHHHHHHH
Q 015875 287 TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN-----CERDIR---FELLARLCPNSTGADIRSVCTEA 358 (399)
Q Consensus 287 tn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~-----~~~~~~---~~~la~~~~g~sg~di~~l~~~A 358 (399)
||.+..+.+++++ || ..+.|+.|+.+++..+++.+..... -...++ +..++.... ++++.+++..
T Consensus 138 ~n~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~----~d~r~~l~~l 210 (316)
T PHA02544 138 ANNKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF----PDFRRTINEL 210 (316)
T ss_pred cCChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC----CCHHHHHHHH
Confidence 9999999999998 88 5889999999999988775543321 011223 244444333 2566666555
Q ss_pred HHHHHHHcCCCccHHHHHHH
Q 015875 359 GMFAIRARRKTVTEKDFLDA 378 (399)
Q Consensus 359 ~~~A~~~~~~~It~ed~~~a 378 (399)
..++. ...++.+++...
T Consensus 211 ~~~~~---~~~i~~~~l~~~ 227 (316)
T PHA02544 211 QRYAS---TGKIDAGILSEV 227 (316)
T ss_pred HHHHc---cCCCCHHHHHHh
Confidence 54442 345777665543
No 72
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.78 E-value=1.6e-17 Score=164.77 Aligned_cols=223 Identities=22% Similarity=0.262 Sum_probs=151.4
Q ss_pred CccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC---------CceEEEec
Q 015875 138 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---------ACFIRVIG 208 (399)
Q Consensus 138 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~---------~~~i~v~~ 208 (399)
...+++.|.++++++|..++...+. | ..+.+++|+||||||||++++++++.+. ..++.++|
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 3335699999999999999864222 1 3456799999999999999999998652 56888888
Q ss_pred cchhhh----------hh--ch--------hHHHHHHHHHHHH-cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHH
Q 015875 209 SELVQK----------YV--GE--------GARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLE 267 (399)
Q Consensus 209 s~l~~~----------~~--g~--------~~~~v~~~f~~a~-~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ 267 (399)
...... .. |. .......++.... ...+.||+|||+|.+.+. .. ..+..
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~~---~~L~~ 151 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------DD---DLLYQ 151 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------Cc---HHHHh
Confidence 654321 11 11 1223344555443 345679999999999632 11 23444
Q ss_pred HHHHhcC-CCCCCCeEEEEecCCCC---CCCccccCCCCce-eEEEecCCCHHHHHHHHHHHHhccCCC---CcccHHHH
Q 015875 268 IVNQLDG-FDARGNIKVLMATNRPD---TLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRTMNCE---RDIRFELL 339 (399)
Q Consensus 268 ll~~l~~-~~~~~~v~vI~atn~~~---~ld~al~r~gRf~-~~i~~~~P~~~er~~Il~~~~~~~~~~---~~~~~~~l 339 (399)
++...+. .....++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.++...... .+..++.+
T Consensus 152 l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i 229 (365)
T TIGR02928 152 LSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLC 229 (365)
T ss_pred HhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHH
Confidence 4433111 12235788999999875 57788877 775 589999999999999999988631111 11112333
Q ss_pred HH---HCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 340 AR---LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 340 a~---~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
+. .+.| ..+.+..+|..|...|..++...||.+|+..|++.+.
T Consensus 230 ~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 230 AALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 33 3344 4557777899999999888888999999999988773
No 73
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=1.5e-17 Score=176.26 Aligned_cols=196 Identities=18% Similarity=0.184 Sum_probs=142.2
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceE-------
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI------- 204 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i------- 204 (399)
.+++++.+|++|+|++.+++.|+.++.. + +.+..+||+||||||||++|+++|+.+++...
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~-----------~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg 74 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQ-----------Q-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCG 74 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCC
Confidence 3567889999999999999999999875 1 33556799999999999999999998876410
Q ss_pred EE-eccchhhh-------hhc---hhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHH
Q 015875 205 RV-IGSELVQK-------YVG---EGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 269 (399)
Q Consensus 205 ~v-~~s~l~~~-------~~g---~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 269 (399)
.+ .|..+... +-+ .+-..+|.+...+. .....|+||||+|.| +.+.++.|+..|
T Consensus 75 ~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNALLKtL 143 (944)
T PRK14949 75 VCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNALLKTL 143 (944)
T ss_pred CchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHHHHHH
Confidence 00 00000000 000 11233455444433 234569999999999 678888888888
Q ss_pred HHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcH
Q 015875 270 NQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTG 348 (399)
Q Consensus 270 ~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 348 (399)
++ ...++++|++|+.+..|.+.+++ |+ ..+.|+.++.++...+|+..+...++. .+..+..|+..+.| +.
T Consensus 144 EE-----PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~ 214 (944)
T PRK14949 144 EE-----PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SM 214 (944)
T ss_pred hc-----cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 75 45678888889888889999999 88 889999999999999998877664433 22335677777766 67
Q ss_pred HHHHHHHHHHH
Q 015875 349 ADIRSVCTEAG 359 (399)
Q Consensus 349 ~di~~l~~~A~ 359 (399)
|++.++|..+.
T Consensus 215 R~ALnLLdQal 225 (944)
T PRK14949 215 RDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHH
Confidence 78888887766
No 74
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.78 E-value=4.4e-19 Score=174.92 Aligned_cols=216 Identities=19% Similarity=0.273 Sum_probs=153.7
Q ss_pred CCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec-----
Q 015875 137 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG----- 208 (399)
Q Consensus 137 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~----- 208 (399)
...+.+|+|.+.++.++.+.|+. -.+.+..|||.|++||||..+||+|++.. +.||+.+||
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~-----------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV-----------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH-----------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 45677899999999999999986 34667899999999999999999999865 689999999
Q ss_pred ----cchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHH--hcCCCCC----
Q 015875 209 ----SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ--LDGFDAR---- 278 (399)
Q Consensus 209 ----s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~--l~~~~~~---- 278 (399)
|+|+++..|.+.+.+..--......+.+.||+|||..| +.+.|..|++.|++ ++.+...
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~ik 356 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRTIK 356 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCceeE
Confidence 55666666666666554333333345569999999999 89999999999987 3333222
Q ss_pred CCeEEEEecCCC--CCCCccccCCCCcee--EEEecCCCHHHHHH--------HHHHHHhccCC-CCcccHHHHHHHCCC
Q 015875 279 GNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ--------IFKIHTRTMNC-ERDIRFELLARLCPN 345 (399)
Q Consensus 279 ~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~--------Il~~~~~~~~~-~~~~~~~~la~~~~g 345 (399)
-+|.||+|||+- +.+...-+|.+.|++ ++.+..|++++|.+ +++....+.+. ...++.+.+..+...
T Consensus 357 VDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y 436 (550)
T COG3604 357 VDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY 436 (550)
T ss_pred EEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC
Confidence 368999999983 444455556666666 66666799999987 33333344444 344567777777776
Q ss_pred CcHHHHHHHHHHHHHHHHHHcCCCccHHHH
Q 015875 346 STGADIRSVCTEAGMFAIRARRKTVTEKDF 375 (399)
Q Consensus 346 ~sg~di~~l~~~A~~~A~~~~~~~It~ed~ 375 (399)
.+|++++.+-+-....+..+ ...++.+|+
T Consensus 437 ~wPGNVRELen~veRavlla-~~~~~~~d~ 465 (550)
T COG3604 437 EWPGNVRELENVVERAVLLA-GRLTRRGDL 465 (550)
T ss_pred CCCCcHHHHHHHHHHHHHHh-cccCCCcce
Confidence 66655555544444444444 444555664
No 75
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=2.4e-17 Score=168.43 Aligned_cols=218 Identities=14% Similarity=0.182 Sum_probs=157.3
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEE-----
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR----- 205 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~----- 205 (399)
+..++.|.+|++++|++.+++.|+..+.. -+.+.++||+||||||||++|+++|+.+++....
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~ 78 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTT 78 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcC
Confidence 45678899999999999999999988764 1346689999999999999999999988653110
Q ss_pred -------Eeccchhhh----------hhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHH
Q 015875 206 -------VIGSELVQK----------YVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRT 264 (399)
Q Consensus 206 -------v~~s~l~~~----------~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~ 264 (399)
-+|..+... ....+...++.+++.+.. ....|++|||+|.+ +...++.
T Consensus 79 ~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-----------s~~a~na 147 (507)
T PRK06645 79 IKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-----------SKGAFNA 147 (507)
T ss_pred cCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc-----------CHHHHHH
Confidence 011111110 011234556677766643 34569999999998 4556667
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHC
Q 015875 265 MLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLC 343 (399)
Q Consensus 265 l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~ 343 (399)
|+..+++ +...+++|++|+.++.+.+++++ |+ ..++|..++.++...+++..++..+.. .+..++.|+..+
T Consensus 148 LLk~LEe-----pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s 219 (507)
T PRK06645 148 LLKTLEE-----PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKS 219 (507)
T ss_pred HHHHHhh-----cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 7666653 45677888888888889999998 88 689999999999999999998876654 223467788887
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 015875 344 PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNK 381 (399)
Q Consensus 344 ~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~ 381 (399)
.| +.+++.+++..+..++.. ....||.+++.+.+..
T Consensus 220 ~G-slR~al~~Ldkai~~~~~-~~~~It~~~V~~llg~ 255 (507)
T PRK06645 220 EG-SARDAVSILDQAASMSAK-SDNIISPQVINQMLGL 255 (507)
T ss_pred CC-CHHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHHCC
Confidence 66 777888888777665421 2336888888766543
No 76
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.76 E-value=2.8e-17 Score=178.12 Aligned_cols=223 Identities=18% Similarity=0.236 Sum_probs=161.9
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CCce
Q 015875 134 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACF 203 (399)
Q Consensus 134 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~~~ 203 (399)
...+-++++++|+++.++++.+++.. ....+++|+||||||||++|+.+|+.+ +..+
T Consensus 180 ~~r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i 246 (852)
T TIGR03345 180 QAREGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRL 246 (852)
T ss_pred HhcCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeE
Confidence 34667888999999998888777654 234489999999999999999999975 3557
Q ss_pred EEEeccchhh--hhhchhHHHHHHHHHHHHc-CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 015875 204 IRVIGSELVQ--KYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 280 (399)
Q Consensus 204 i~v~~s~l~~--~~~g~~~~~v~~~f~~a~~-~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 280 (399)
+.++.+.+.. .+.|+.+..++.+++.+.. ..+.||||||||.+.+.+...+ ..+..+.|...+ .++.
T Consensus 247 ~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~---~~d~~n~Lkp~l-------~~G~ 316 (852)
T TIGR03345 247 LSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG---QGDAANLLKPAL-------ARGE 316 (852)
T ss_pred EEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc---cccHHHHhhHHh-------hCCC
Confidence 7777777763 6889999999999998864 4678999999999987653221 122233344333 3678
Q ss_pred eEEEEecCCC-----CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-----CcccHHHHHHHCCCCcH--
Q 015875 281 IKVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-----RDIRFELLARLCPNSTG-- 348 (399)
Q Consensus 281 v~vI~atn~~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-----~~~~~~~la~~~~g~sg-- 348 (399)
+.+|+||+.. -.+|++|.| || ..|.++.|+.+++..||+.+.+.+... .+..+..++.++.+|.+
T Consensus 317 l~~IgaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r 393 (852)
T TIGR03345 317 LRTIAATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGR 393 (852)
T ss_pred eEEEEecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccc
Confidence 9999999863 358999999 99 689999999999999987666543321 23446777788877643
Q ss_pred ---HHHHHHHHHHHHHHH-HHcCCCccHHHHHHHHHHH
Q 015875 349 ---ADIRSVCTEAGMFAI-RARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 349 ---~di~~l~~~A~~~A~-~~~~~~It~ed~~~ai~~v 382 (399)
.-...++.+|+.... ......+..+++.+.+...
T Consensus 394 ~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~ 431 (852)
T TIGR03345 394 QLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAAL 431 (852)
T ss_pred cCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 555677777765443 3344555666666555444
No 77
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.76 E-value=4.6e-17 Score=163.27 Aligned_cols=224 Identities=20% Similarity=0.255 Sum_probs=152.0
Q ss_pred CccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-----CCceEEEeccchh
Q 015875 138 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGSELV 212 (399)
Q Consensus 138 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-----~~~~i~v~~s~l~ 212 (399)
...+.+.|.++.+++|...+...+.. ..+.+++|+||||||||++++.+++.+ +..++.++|....
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 34456999999999999998642221 345579999999999999999999876 5778999886432
Q ss_pred h----------hhhc--------hhHHHHHHHHHHHHc-CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc
Q 015875 213 Q----------KYVG--------EGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 273 (399)
Q Consensus 213 ~----------~~~g--------~~~~~v~~~f~~a~~-~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~ 273 (399)
. ...+ ........+.+.... ..+.||+|||+|.+.... .. ..+..+++.+.
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~---~~l~~l~~~~~ 167 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GN---DVLYSLLRAHE 167 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------Cc---hHHHHHHHhhh
Confidence 2 1111 112233334443332 456799999999996211 12 23444444333
Q ss_pred CCCCCCCeEEEEecCCC---CCCCccccCCCCce-eEEEecCCCHHHHHHHHHHHHhccC---CCCcccHHHHHHHCCCC
Q 015875 274 GFDARGNIKVLMATNRP---DTLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRTMN---CERDIRFELLARLCPNS 346 (399)
Q Consensus 274 ~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~-~~i~~~~P~~~er~~Il~~~~~~~~---~~~~~~~~~la~~~~g~ 346 (399)
... ..++.+|+++|.. +.+++.+.+ ||. ..+.|++++.++..+|++.+++... ...+..++.+++.+.+.
T Consensus 168 ~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~ 244 (394)
T PRK00411 168 EYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTARE 244 (394)
T ss_pred ccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHh
Confidence 322 2378889988875 346777766 553 5789999999999999998875421 11222346666666432
Q ss_pred --cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 347 --TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 347 --sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
..+.+..+|..|...|..++...|+.+|+..|++.+.
T Consensus 245 ~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 245 HGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 2356668899999999888889999999999999873
No 78
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.75 E-value=9.8e-17 Score=161.58 Aligned_cols=219 Identities=21% Similarity=0.354 Sum_probs=147.7
Q ss_pred CCCCcccc-ccCcHHH--HHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-----CCceEEE
Q 015875 135 KPDVTYND-VGGCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRV 206 (399)
Q Consensus 135 ~~~~~~~~-i~G~~~~--~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-----~~~~i~v 206 (399)
.+..+|++ ++|.+.. ...++++...+ + ....+++||||||+|||+|++++++++ +..++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 56788998 5565443 33344443321 1 234569999999999999999999976 5778899
Q ss_pred eccchhhhhhchhHH-HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 015875 207 IGSELVQKYVGEGAR-MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 285 (399)
Q Consensus 207 ~~s~l~~~~~g~~~~-~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ 285 (399)
++.++...+...... ....+.+..+ .+.+|+|||+|.+.+ ....+..++.+++.+.. .+.. +|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~---------~~~~~~~l~~~~n~~~~---~~~~-iii 237 (405)
T TIGR00362 173 SSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG---------KERTQEEFFHTFNALHE---NGKQ-IVL 237 (405)
T ss_pred EHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC---------CHHHHHHHHHHHHHHHH---CCCC-EEE
Confidence 988876654433211 1112222222 356999999999854 23456778888876542 2233 444
Q ss_pred ecC-CCC---CCCccccCCCCcee--EEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHH
Q 015875 286 ATN-RPD---TLDPALLRPGRLDR--KVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEA 358 (399)
Q Consensus 286 atn-~~~---~ld~al~r~gRf~~--~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A 358 (399)
++| .|. .+++.+++ ||.. .++|++|+.++|..|++..+...+.. ++..++.|+....+ +.+++..+++..
T Consensus 238 ts~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l 314 (405)
T TIGR00362 238 TSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRL 314 (405)
T ss_pred ecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 554 443 46788888 8864 79999999999999999998876553 33346778877755 678888888888
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 359 GMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 359 ~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
..+|...+ ..||.+.+.+++....
T Consensus 315 ~~~a~~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 315 LAYASLTG-KPITLELAKEALKDLL 338 (405)
T ss_pred HHHHHHhC-CCCCHHHHHHHHHHhc
Confidence 77775544 4478877777777653
No 79
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=3.9e-17 Score=169.84 Aligned_cols=208 Identities=18% Similarity=0.235 Sum_probs=154.3
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCce--------
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF-------- 203 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~-------- 203 (399)
..++.+.+|++|+|++.+++.|+.++.. -+.+.++||+||+|+|||++|+++|+.+++.-
T Consensus 7 arKYRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 4568899999999999999999999875 13466899999999999999999999876531
Q ss_pred ----------------EEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHH
Q 015875 204 ----------------IRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 263 (399)
Q Consensus 204 ----------------i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~ 263 (399)
+.++.. ...+...+++++..+.. ....|+||||+|.+ +...++
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------s~~A~N 137 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------SKSAFN 137 (709)
T ss_pred ccHHHHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------CHHHHH
Confidence 112111 11223456666665432 34579999999998 556677
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHH
Q 015875 264 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 342 (399)
Q Consensus 264 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~ 342 (399)
.|+..|++ ....+.+|++|+.+..+.+.+++ || ..+.|+.++.++....|+..+...++. .+..+..|+..
T Consensus 138 ALLKtLEE-----Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~ 209 (709)
T PRK08691 138 AMLKTLEE-----PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRA 209 (709)
T ss_pred HHHHHHHh-----CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 77777764 34567888888889899999987 88 788999999999999999888876653 23346777877
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 015875 343 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNK 381 (399)
Q Consensus 343 ~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~ 381 (399)
+.| +.+++.+++..+..+ +...|+.+++...+..
T Consensus 210 A~G-slRdAlnLLDqaia~----g~g~It~e~V~~lLG~ 243 (709)
T PRK08691 210 AAG-SMRDALSLLDQAIAL----GSGKVAENDVRQMIGA 243 (709)
T ss_pred hCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHcc
Confidence 755 777888888776654 3456888877776543
No 80
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=4.9e-17 Score=165.07 Aligned_cols=205 Identities=16% Similarity=0.252 Sum_probs=154.3
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC-----------
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA----------- 201 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~----------- 201 (399)
.++.|.+|+|++|++.+++.|+.++.. -+.+.++||+||+|+|||++|+.+|+.+++
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~ 72 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT 72 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc
Confidence 457889999999999999999988864 145678999999999999999999987643
Q ss_pred -------------ceEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHH
Q 015875 202 -------------CFIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRT 264 (399)
Q Consensus 202 -------------~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~ 264 (399)
.++.+++++- .+-..++++.+.+.. ....|++|||+|.+ +.+.++.
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----------s~~A~Na 135 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHML-----------SNSAFNA 135 (491)
T ss_pred cHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhC-----------CHHHHHH
Confidence 2344444321 133456666665542 34569999999999 5666777
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHC
Q 015875 265 MLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLC 343 (399)
Q Consensus 265 l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~ 343 (399)
|+..+++ +...+.+|++|+.++.+.+.+++ |+ ..++|..++.++....++..+...+.. .+..++.|+..+
T Consensus 136 LLK~LEe-----Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s 207 (491)
T PRK14964 136 LLKTLEE-----PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENS 207 (491)
T ss_pred HHHHHhC-----CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 7777664 34578888888888889999998 88 789999999999999999888776653 334467778887
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 344 PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 344 ~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
.| +.+++.+++..+..++ ...||.+++.+.+
T Consensus 208 ~G-slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 208 SG-SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred CC-CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 65 7778888887776654 2468888887754
No 81
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.75 E-value=9e-17 Score=168.15 Aligned_cols=221 Identities=20% Similarity=0.303 Sum_probs=152.0
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CCceEE
Q 015875 136 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFIR 205 (399)
Q Consensus 136 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~~~i~ 205 (399)
+....+.|.|.++++++|..++...+. |-.++..++|+|+||||||++++.+.+++ ...++.
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVY 821 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFE 821 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEE
Confidence 334446799999999999999875332 22233445799999999999999998765 256789
Q ss_pred Eeccchhhhh---------h-c-------hhHHHHHHHHHHHH--cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHH
Q 015875 206 VIGSELVQKY---------V-G-------EGARMVRELFQMAR--SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML 266 (399)
Q Consensus 206 v~~s~l~~~~---------~-g-------~~~~~v~~~f~~a~--~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~ 266 (399)
|+|..+...+ + + .....+..+|.... .....||+|||||.|... .+..|+
T Consensus 822 INCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLY 890 (1164)
T PTZ00112 822 INGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLF 890 (1164)
T ss_pred EeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHH
Confidence 9995533211 0 1 12234556666542 234569999999999542 356777
Q ss_pred HHHHHhcCCCCCCCeEEEEecCC---CCCCCccccCCCCcee-EEEecCCCHHHHHHHHHHHHhccC-CCCcccHHHHHH
Q 015875 267 EIVNQLDGFDARGNIKVLMATNR---PDTLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRTMN-CERDIRFELLAR 341 (399)
Q Consensus 267 ~ll~~l~~~~~~~~v~vI~atn~---~~~ld~al~r~gRf~~-~i~~~~P~~~er~~Il~~~~~~~~-~~~~~~~~~la~ 341 (399)
.|++... .....+.||+++|. +..+++.+++ ||.. .+.|++++.+++.+||+..+.... .-.+..++.+|+
T Consensus 891 nLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIAr 966 (1164)
T PTZ00112 891 TLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCAR 966 (1164)
T ss_pred HHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 7877643 23457889999986 5667888888 6654 589999999999999999987542 122333566666
Q ss_pred HCCCCcHHHHH---HHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 342 LCPNSTGADIR---SVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 342 ~~~g~sg~di~---~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
.....+| |+| .+|+.|+.. ++...|+.+|+.+|+..+.
T Consensus 967 kVAq~SG-DARKALDILRrAgEi---kegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 967 KVANVSG-DIRKALQICRKAFEN---KRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred hhhhcCC-HHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHH
Confidence 5544333 555 555666553 3556899999999998774
No 82
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.75 E-value=8.6e-17 Score=164.05 Aligned_cols=222 Identities=22% Similarity=0.336 Sum_probs=151.8
Q ss_pred ecCCCCcccc-ccCcHH--HHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-----CCceE
Q 015875 133 EEKPDVTYND-VGGCKE--QIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFI 204 (399)
Q Consensus 133 ~~~~~~~~~~-i~G~~~--~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-----~~~~i 204 (399)
...+..+|++ ++|... +...++++...+ + ....+++||||||+|||+|++++++++ +..++
T Consensus 114 ~l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~ 182 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVV 182 (450)
T ss_pred CCCCCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEE
Confidence 3457789998 445433 455555554431 1 223569999999999999999999986 56688
Q ss_pred EEeccchhhhhhchhHHH-HHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 015875 205 RVIGSELVQKYVGEGARM-VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 283 (399)
Q Consensus 205 ~v~~s~l~~~~~g~~~~~-v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v 283 (399)
.+++.++...+....... ...+.+..+ .+.+|+|||+|.+.+ ....+..++.+++.+.. .+..+|
T Consensus 183 yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~---------~~~~~~~l~~~~n~l~~---~~~~ii 248 (450)
T PRK00149 183 YVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAG---------KERTQEEFFHTFNALHE---AGKQIV 248 (450)
T ss_pred EEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcC---------CHHHHHHHHHHHHHHHH---CCCcEE
Confidence 999988876654443221 122222222 466999999999854 33456777777776542 223334
Q ss_pred EEecCCCCC---CCccccCCCCce--eEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHH
Q 015875 284 LMATNRPDT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTE 357 (399)
Q Consensus 284 I~atn~~~~---ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~ 357 (399)
|+++..|.. +++.+.+ ||. ..+++.+|+.++|..|++..+...+.. ++..++.|+..+.| +.+++..+++.
T Consensus 249 its~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~ 325 (450)
T PRK00149 249 LTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNR 325 (450)
T ss_pred EECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHH
Confidence 444444443 6788888 885 489999999999999999998765432 23336777777655 77788888888
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 358 AGMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 358 A~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
...+|...++ .||.+.+.++++...
T Consensus 326 l~~~~~~~~~-~it~~~~~~~l~~~~ 350 (450)
T PRK00149 326 LIAYASLTGK-PITLELAKEALKDLL 350 (450)
T ss_pred HHHHHHhhCC-CCCHHHHHHHHHHhh
Confidence 8777765544 488888888888764
No 83
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=1.3e-16 Score=163.56 Aligned_cols=204 Identities=19% Similarity=0.265 Sum_probs=144.4
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc----------
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------- 202 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~---------- 202 (399)
.++.|.+|++|+|++.+++.|+.++.. -..+..+|||||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 567899999999999999999999875 1345567999999999999999999987531
Q ss_pred -------------eEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHHH
Q 015875 203 -------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 265 (399)
Q Consensus 203 -------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l 265 (399)
++.++++. ..+...++++...+.. ..+.+|+|||+|.+ +...++.|
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~naL 136 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFNAL 136 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHHHH
Confidence 33333321 1122344554443332 35679999999988 44555666
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCC
Q 015875 266 LEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCP 344 (399)
Q Consensus 266 ~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~ 344 (399)
+..++. ...++++|++|+.+..+.+.+.+ |+ ..++|+.|+.++....++..+...++. .+..+..++..+.
T Consensus 137 Lk~LEe-----p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~ 208 (504)
T PRK14963 137 LKTLEE-----PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLAD 208 (504)
T ss_pred HHHHHh-----CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 555553 34567788888888899999998 87 689999999999999999888776653 2234567777776
Q ss_pred CCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 345 NSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 345 g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
| +.+++.++++.+... ...||.+++.+.+
T Consensus 209 G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 209 G-AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred C-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 5 444555555544321 3468888877664
No 84
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=1.1e-16 Score=164.52 Aligned_cols=206 Identities=16% Similarity=0.233 Sum_probs=147.4
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC----------
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---------- 201 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~---------- 201 (399)
.+++.|.+|++++|++.+++.|...+.. -+.+..+||+||+|+|||++|+.+|+.+.+
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCN 74 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 4567889999999999999999999875 134556899999999999999999998754
Q ss_pred --------------ceEEEeccchhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHH
Q 015875 202 --------------CFIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQR 263 (399)
Q Consensus 202 --------------~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~ 263 (399)
.++.+++..- .+...++.+.+.+. .....|+||||+|.+ +...++
T Consensus 75 ~C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~~a~n 137 (546)
T PRK14957 75 KCENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SKQSFN 137 (546)
T ss_pred ccHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cHHHHH
Confidence 1222222110 11223344444333 234569999999999 667788
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHH
Q 015875 264 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 342 (399)
Q Consensus 264 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~ 342 (399)
.|+..+++ ....+.+|++|+.+..+.+.+++ |+ ..++|..++.++....++..++..++. ....+..++..
T Consensus 138 aLLK~LEe-----pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~ 209 (546)
T PRK14957 138 ALLKTLEE-----PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYH 209 (546)
T ss_pred HHHHHHhc-----CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888875 34567778777778888888888 88 899999999999998888877766543 23335667777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 343 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 343 ~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
+.| +.+++.+++..+..++ + ..|+.+++.+++
T Consensus 210 s~G-dlR~alnlLek~i~~~---~-~~It~~~V~~~l 241 (546)
T PRK14957 210 AKG-SLRDALSLLDQAISFC---G-GELKQAQIKQML 241 (546)
T ss_pred cCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHHH
Confidence 754 6666666666655442 2 568887777654
No 85
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.74 E-value=3.4e-17 Score=152.92 Aligned_cols=195 Identities=18% Similarity=0.245 Sum_probs=140.3
Q ss_pred ccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc------
Q 015875 129 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------ 202 (399)
Q Consensus 129 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~------ 202 (399)
..|.+++.|.+|+++.|++.+++.|+..+.. ..-.++|||||||||||+.|+++|+++.++
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~r 90 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCR 90 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccc
Confidence 4578899999999999999999999999875 123379999999999999999999988652
Q ss_pred eEEEeccchhhhhhchhHHHHHHHHHHHHc---------CCC-EEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHh
Q 015875 203 FIRVIGSELVQKYVGEGARMVRELFQMARS---------KKA-CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL 272 (399)
Q Consensus 203 ~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~---------~~p-~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l 272 (399)
+...+.|+..+..++ ...+. -|..... ..| -|++|||.|.| ..+.|.+|.+.++.
T Consensus 91 vl~lnaSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~- 155 (346)
T KOG0989|consen 91 VLELNASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMED- 155 (346)
T ss_pred hhhhcccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhc-
Confidence 334444444333211 11111 1222211 122 69999999999 67889999888874
Q ss_pred cCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHH
Q 015875 273 DGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADI 351 (399)
Q Consensus 273 ~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di 351 (399)
....+++|..||..+.+...+.+ |+ ..+.|+....+.....|+......++. ++-.+..++..++| ++
T Consensus 156 ----~s~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dL 224 (346)
T KOG0989|consen 156 ----FSRTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG----DL 224 (346)
T ss_pred ----cccceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cH
Confidence 24578899999999999999999 88 678888888888888888777766654 23336777777766 56
Q ss_pred HHHHHHHHHHH
Q 015875 352 RSVCTEAGMFA 362 (399)
Q Consensus 352 ~~l~~~A~~~A 362 (399)
|..+......+
T Consensus 225 R~Ait~Lqsls 235 (346)
T KOG0989|consen 225 RRAITTLQSLS 235 (346)
T ss_pred HHHHHHHHHhh
Confidence 55544443333
No 86
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=6.8e-17 Score=168.17 Aligned_cols=207 Identities=17% Similarity=0.238 Sum_probs=150.6
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc--------
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 202 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~-------- 202 (399)
+.+++.+.+|++++|++.+++.|+.++.. -+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~ 73 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI 73 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC
Confidence 34568899999999999999999999875 1345578999999999999999999988652
Q ss_pred ---------------------eEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCC
Q 015875 203 ---------------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGG 257 (399)
Q Consensus 203 ---------------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~ 257 (399)
++.+++.. ..+-..++++.+.+.. ....|++|||+|.|
T Consensus 74 ~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L----------- 136 (618)
T PRK14951 74 TATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML----------- 136 (618)
T ss_pred CCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-----------
Confidence 12222111 1123345666655432 23469999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccH
Q 015875 258 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRF 336 (399)
Q Consensus 258 ~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~ 336 (399)
+...++.|+..+++ ....+.+|++|+.+..+.+.+++ |+ ..++|..++.++....++..+...++. .+..+
T Consensus 137 s~~a~NaLLKtLEE-----PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL 208 (618)
T PRK14951 137 TNTAFNAMLKTLEE-----PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQAL 208 (618)
T ss_pred CHHHHHHHHHhccc-----CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 56667777766664 34577788888888888888988 88 899999999999999998888766654 22346
Q ss_pred HHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 337 ELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 337 ~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
..|+..+.| +.+++.+++..+..+ +...||.+++.+.+
T Consensus 209 ~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 209 RLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 777887766 667777777665544 34468877776654
No 87
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.74 E-value=3.8e-17 Score=155.32 Aligned_cols=210 Identities=26% Similarity=0.408 Sum_probs=148.8
Q ss_pred eecCCCCccccccCcHHHHHH---HHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc---eEE
Q 015875 132 VEEKPDVTYNDVGGCKEQIEK---MREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---FIR 205 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~---l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~---~i~ 205 (399)
.+.-.+.+++|.+|++..+.+ |+.+|+. ..-.+++||||||||||+||+.|+.....+ |+.
T Consensus 129 aermRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfve 195 (554)
T KOG2028|consen 129 AERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVE 195 (554)
T ss_pred hhhcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEE
Confidence 345577889999998887654 4445543 223379999999999999999999977555 666
Q ss_pred EeccchhhhhhchhHHHHHHHHHHHHc-----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 015875 206 VIGSELVQKYVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 280 (399)
Q Consensus 206 v~~s~l~~~~~g~~~~~v~~~f~~a~~-----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 280 (399)
+++. ......+|.+|+.++. ....|||||||+++ +...|.+++-.++ .+.
T Consensus 196 lSAt-------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----------NksQQD~fLP~VE-------~G~ 250 (554)
T KOG2028|consen 196 LSAT-------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----------NKSQQDTFLPHVE-------NGD 250 (554)
T ss_pred Eecc-------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----------hhhhhhcccceec-------cCc
Confidence 6653 3345677888888764 44579999999999 5566777765544 678
Q ss_pred eEEEEec--CCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccC--------CCC------cccHHHHHHHCC
Q 015875 281 IKVLMAT--NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN--------CER------DIRFELLARLCP 344 (399)
Q Consensus 281 v~vI~at--n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~--------~~~------~~~~~~la~~~~ 344 (399)
|.+|++| |+.-.|..+|++ |+ +++.+...+..+...||..-..-++ +.. +--++.++..++
T Consensus 251 I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsd 327 (554)
T KOG2028|consen 251 ITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSD 327 (554)
T ss_pred eEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcC
Confidence 8899877 556789999999 88 8889999999998888887543211 111 112567888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHc---CCCccHHHHHHHHHHH
Q 015875 345 NSTGADIRSVCTEAGMFAIRAR---RKTVTEKDFLDAVNKV 382 (399)
Q Consensus 345 g~sg~di~~l~~~A~~~A~~~~---~~~It~ed~~~ai~~v 382 (399)
|-..+.+..+--.+.+...+.+ +..++.+|+.+++..-
T Consensus 328 GDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 328 GDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred chHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 8555555444333344555544 4579999999888754
No 88
>PRK06893 DNA replication initiation factor; Validated
Probab=99.74 E-value=2e-16 Score=147.17 Aligned_cols=214 Identities=14% Similarity=0.179 Sum_probs=134.8
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 208 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~ 208 (399)
+...++.+|++.+|.+... .+..+... +.. .....++||||||||||||++++|+++ +.....+..
T Consensus 7 ~~~~~~~~fd~f~~~~~~~-~~~~~~~~-------~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNLL-LLDSLRKN-------FID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChHH-HHHHHHHH-------hhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 4456788999976555432 12222111 111 122358999999999999999999975 334444443
Q ss_pred cchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEec-
Q 015875 209 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT- 287 (399)
Q Consensus 209 s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at- 287 (399)
.... .....+++.. .+..+|+|||++.+.+ +..++..++.+++.+.. .+..++|.|+
T Consensus 76 ~~~~--------~~~~~~~~~~--~~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~~---~~~~illits~ 133 (229)
T PRK06893 76 SKSQ--------YFSPAVLENL--EQQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIKE---QGKTLLLISAD 133 (229)
T ss_pred HHhh--------hhhHHHHhhc--ccCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH---cCCcEEEEeCC
Confidence 3211 1111223322 2446999999999854 35567778888887642 2333444444
Q ss_pred CCCCCCC---ccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHH
Q 015875 288 NRPDTLD---PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAI 363 (399)
Q Consensus 288 n~~~~ld---~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~ 363 (399)
..|..++ +.+.++.++...+.++.|+.++|.+|++..+...++. ++...+.|+...++ +.+.+..+++.....+.
T Consensus 134 ~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~ 212 (229)
T PRK06893 134 CSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASL 212 (229)
T ss_pred CChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 4465544 8888844445689999999999999999888655443 23336778887766 56677777776654444
Q ss_pred HHcCCCccHHHHHHHHH
Q 015875 364 RARRKTVTEKDFLDAVN 380 (399)
Q Consensus 364 ~~~~~~It~ed~~~ai~ 380 (399)
.++ ..||...+.+++.
T Consensus 213 ~~~-~~it~~~v~~~L~ 228 (229)
T PRK06893 213 QAQ-RKLTIPFVKEILG 228 (229)
T ss_pred hcC-CCCCHHHHHHHhc
Confidence 333 4699998887753
No 89
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.74 E-value=1e-16 Score=170.20 Aligned_cols=210 Identities=22% Similarity=0.240 Sum_probs=142.1
Q ss_pred ceecCCCCccccccCcHHHHH---HHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 131 TVEEKPDVTYNDVGGCKEQIE---KMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~---~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
+.+..++.+|++++|++..+. .+++++.. ....+++||||||||||++|+++|+..+.+|+.++
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 455677899999999999985 56666653 22347999999999999999999999999998888
Q ss_pred ccchhhhhhchhHHHHHHHHHHH-----HcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeE
Q 015875 208 GSELVQKYVGEGARMVRELFQMA-----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 282 (399)
Q Consensus 208 ~s~l~~~~~g~~~~~v~~~f~~a-----~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 282 (399)
+.... ...++..+..+ ......+|||||+|.+ +...|..|+..++ .+.++
T Consensus 85 a~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----------n~~qQdaLL~~lE-------~g~Ii 139 (725)
T PRK13341 85 AVLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----------NKAQQDALLPWVE-------NGTIT 139 (725)
T ss_pred hhhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----------CHHHHHHHHHHhc-------CceEE
Confidence 75321 11222223222 1234569999999999 5666777776554 34577
Q ss_pred EEEecC--CCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhc-------cCCC-CcccHHHHHHHCCCCcHHHHH
Q 015875 283 VLMATN--RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT-------MNCE-RDIRFELLARLCPNSTGADIR 352 (399)
Q Consensus 283 vI~atn--~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~-------~~~~-~~~~~~~la~~~~g~sg~di~ 352 (399)
+|++|. ....+++++++ |+ ..+.|++++.+++..+++..+.. ..+. .+..++.|+..+.| ..+++.
T Consensus 140 LI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~ll 215 (725)
T PRK13341 140 LIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLL 215 (725)
T ss_pred EEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHH
Confidence 777663 33568899998 76 67999999999999999988762 1111 12234666666644 445555
Q ss_pred HHHHHHHHHHHHHcC--CCccHHHHHHHHHHH
Q 015875 353 SVCTEAGMFAIRARR--KTVTEKDFLDAVNKV 382 (399)
Q Consensus 353 ~l~~~A~~~A~~~~~--~~It~ed~~~ai~~v 382 (399)
++++.|...+..... ..||.+++.+++.+.
T Consensus 216 n~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 216 NALELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 555554432211111 238888888887764
No 90
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.1e-17 Score=165.69 Aligned_cols=229 Identities=21% Similarity=0.320 Sum_probs=165.8
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccc------hhh-
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE------LVQ- 213 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~------l~~- 213 (399)
.|--|++++++++.+++.-.... .-....-++|+||||+|||+|++.||+.++..|++++... +.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 35789999999999998652211 1122346899999999999999999999999999997644 333
Q ss_pred --hhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHh--cCC--------CCCCCe
Q 015875 214 --KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL--DGF--------DARGNI 281 (399)
Q Consensus 214 --~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l--~~~--------~~~~~v 281 (399)
.|+|..++.+-+-+..+....| +++|||||.++++-. |++ ..+|+++|+-- ..| -.-++|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r-----GDP--aSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR-----GDP--ASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC-----CCh--HHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 3899999999999999999999 999999999965421 222 45677776421 111 123579
Q ss_pred EEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHH-----hccCCCC---cccHHHHHHHCCCCcH-----
Q 015875 282 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT-----RTMNCER---DIRFELLARLCPNSTG----- 348 (399)
Q Consensus 282 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~-----~~~~~~~---~~~~~~la~~~~g~sg----- 348 (399)
++|+|+|..+.++.+|+. |+ .+|+++-++..+..+|.+.|+ +..++.. .+..+.|-....+|+.
T Consensus 468 mFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR 544 (782)
T COG0466 468 MFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVR 544 (782)
T ss_pred EEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhh
Confidence 999999999999999999 99 899999999999999999887 2333321 1233444444444433
Q ss_pred ---HHHHHHHHHHHHHHHHHcCC---CccHHHHHHHHHHHHhhcc
Q 015875 349 ---ADIRSVCTEAGMFAIRARRK---TVTEKDFLDAVNKVIKGYQ 387 (399)
Q Consensus 349 ---~di~~l~~~A~~~A~~~~~~---~It~ed~~~ai~~v~~~~~ 387 (399)
++|..+|+.+...-...... .|+..++.+-+......+.
T Consensus 545 ~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~f~~~ 589 (782)
T COG0466 545 NLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPVFRYG 589 (782)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCcccCcc
Confidence 67778888877765544332 4777788776665544443
No 91
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.73 E-value=2.5e-16 Score=145.78 Aligned_cols=205 Identities=20% Similarity=0.276 Sum_probs=141.7
Q ss_pred CCCCcccccc--CcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEecc
Q 015875 135 KPDVTYNDVG--GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 209 (399)
Q Consensus 135 ~~~~~~~~i~--G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s 209 (399)
..+.+|++.. +....++.+++++.. ..+.+++|+||+|||||++|+++++.+ +.+++.++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 9 PDDPTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CCchhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 4556777754 577788888887642 346689999999999999999999875 5678899988
Q ss_pred chhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 210 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 210 ~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
.+.... ..++.... .+.+|+|||+|.+.. +...+..+..+++.+.. .+. .+|++++.
T Consensus 76 ~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~~---~~~-~iIits~~ 132 (226)
T TIGR03420 76 ELAQAD--------PEVLEGLE--QADLVCLDDVEAIAG---------QPEWQEALFHLYNRVRE---AGG-RLLIAGRA 132 (226)
T ss_pred HHHHhH--------HHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH---cCC-eEEEECCC
Confidence 876432 22333222 235999999999832 23457778888776542 122 45556653
Q ss_pred -CCCCC---ccccCCCCc--eeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHH
Q 015875 290 -PDTLD---PALLRPGRL--DRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFA 362 (399)
Q Consensus 290 -~~~ld---~al~r~gRf--~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A 362 (399)
+..++ +.+.+ |+ ...+.+++|+.+++..+++.+..+.+.. .+..++.|+... +.+.++++++++.+...+
T Consensus 133 ~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~-~gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 133 APAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHG-SRDMGSLMALLDALDRAS 209 (226)
T ss_pred ChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHH
Confidence 33322 66776 65 4689999999999999999877654432 222356666654 337789999999888766
Q ss_pred HHHcCCCccHHHHHHHH
Q 015875 363 IRARRKTVTEKDFLDAV 379 (399)
Q Consensus 363 ~~~~~~~It~ed~~~ai 379 (399)
..++ ..||.+.+.+.+
T Consensus 210 ~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 210 LAAK-RKITIPFVKEVL 225 (226)
T ss_pred HHhC-CCCCHHHHHHHh
Confidence 5544 569998887664
No 92
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.5e-16 Score=170.89 Aligned_cols=206 Identities=20% Similarity=0.188 Sum_probs=146.9
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc--------
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 202 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~-------- 202 (399)
+..++.+.+|++|+|++.+++.|+.++.. -+.+..+||+||+|||||++|+.+|+.+.|.
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pC 72 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPC 72 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCC
Confidence 34678999999999999999999999875 1334568999999999999999999988652
Q ss_pred ------------------eEEEeccchhhhhhchhHHHHHHHHHHH----HcCCCEEEEEecCCcccCCccCCCCCCChH
Q 015875 203 ------------------FIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNE 260 (399)
Q Consensus 203 ------------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a----~~~~p~il~iDEiD~l~~~r~~~~~~~~~~ 260 (399)
++.+++... .+-..++++.+.+ ......|+||||+|.| +.+
T Consensus 73 g~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t~~ 135 (824)
T PRK07764 73 GECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------TPQ 135 (824)
T ss_pred cccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------CHH
Confidence 122221110 0122333333322 2345679999999999 677
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHH
Q 015875 261 VQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELL 339 (399)
Q Consensus 261 ~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~l 339 (399)
.++.|+.+|++ ...++++|++|+.++.|.+.|++ |+ ..++|..++.++..++|+..++..++. .+..+..+
T Consensus 136 a~NaLLK~LEE-----pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lL 207 (824)
T PRK07764 136 GFNALLKIVEE-----PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLV 207 (824)
T ss_pred HHHHHHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 88888888885 34577888888888889999998 88 789999999999999998888766653 22234566
Q ss_pred HHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHH
Q 015875 340 ARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLD 377 (399)
Q Consensus 340 a~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ 377 (399)
+..+.| +.+++.+++.....++ +...||.+++..
T Consensus 208 a~~sgG-dlR~Al~eLEKLia~~---~~~~IT~e~V~a 241 (824)
T PRK07764 208 IRAGGG-SVRDSLSVLDQLLAGA---GPEGVTYERAVA 241 (824)
T ss_pred HHHcCC-CHHHHHHHHHHHHhhc---CCCCCCHHHHHH
Confidence 667655 6666666666544322 344577765543
No 93
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=2.5e-16 Score=163.85 Aligned_cols=204 Identities=21% Similarity=0.307 Sum_probs=149.8
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc----------
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------- 202 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~---------- 202 (399)
.++.|.+|++++|++.+++.|+.++.. -..+..+||+||+|||||++|+.+|+.+.+.
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 457899999999999999999999875 1345679999999999999999999987542
Q ss_pred --------------eEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHH
Q 015875 203 --------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRT 264 (399)
Q Consensus 203 --------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~ 264 (399)
++.++++ .+.+...++++...+.. ....|++|||+|.| ....++.
T Consensus 76 C~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-----------t~~a~na 138 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-----------STGAFNA 138 (559)
T ss_pred cHHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHH
Confidence 2233221 11234456666666542 34569999999999 4556666
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHC
Q 015875 265 MLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLC 343 (399)
Q Consensus 265 l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~ 343 (399)
|+..+++ +...+++|++|+.++.+.+.+++ |+ ..++|+.|+..+....++..++..++. .+..+..++..+
T Consensus 139 LLKtLEe-----pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s 210 (559)
T PRK05563 139 LLKTLEE-----PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAA 210 (559)
T ss_pred HHHHhcC-----CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6666553 34567788888888999999998 88 678999999999999999888776653 233456777777
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Q 015875 344 PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDA 378 (399)
Q Consensus 344 ~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~a 378 (399)
.| +.+++.+++..+..++ ...||.+|+..+
T Consensus 211 ~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~v 240 (559)
T PRK05563 211 EG-GMRDALSILDQAISFG----DGKVTYEDALEV 240 (559)
T ss_pred CC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 66 6777777777665542 345787776554
No 94
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.73 E-value=2.4e-16 Score=162.52 Aligned_cols=223 Identities=18% Similarity=0.273 Sum_probs=152.0
Q ss_pred ecCCCCccccc-cCcHHH--HHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-----CCceE
Q 015875 133 EEKPDVTYNDV-GGCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFI 204 (399)
Q Consensus 133 ~~~~~~~~~~i-~G~~~~--~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-----~~~~i 204 (399)
...+..+|+++ +|.... ...++.++..+ + ...+.++|||++|+|||+|++++++++ +..++
T Consensus 280 ~L~~~~TFDnFvvG~sN~~A~aaa~avae~~----------~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~ 348 (617)
T PRK14086 280 RLNPKYTFDTFVIGASNRFAHAAAVAVAEAP----------A-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVR 348 (617)
T ss_pred CCCCCCCHhhhcCCCccHHHHHHHHHHHhCc----------c-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEE
Confidence 34577899984 454443 33444444321 1 122359999999999999999999975 56788
Q ss_pred EEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 015875 205 RVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 284 (399)
Q Consensus 205 ~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI 284 (399)
++++.+|...+...........|... ...+++|+||||+.+.+ ....+..|+.+++.+.. .+ ..||
T Consensus 349 Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~g---------ke~tqeeLF~l~N~l~e---~g-k~II 414 (617)
T PRK14086 349 YVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLED---------KESTQEEFFHTFNTLHN---AN-KQIV 414 (617)
T ss_pred EeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccC---------CHHHHHHHHHHHHHHHh---cC-CCEE
Confidence 99998888766544332222233322 23467999999999954 35567888888888752 22 2355
Q ss_pred EecCCC----CCCCccccCCCCcee--EEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHH
Q 015875 285 MATNRP----DTLDPALLRPGRLDR--KVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTE 357 (399)
Q Consensus 285 ~atn~~----~~ld~al~r~gRf~~--~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~ 357 (399)
+|+|.+ ..+++.|++ ||.. .+.+..|+.+.|..||+.++...++. .+.-++.|+....+ +.++|..+++.
T Consensus 415 ITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~r 491 (617)
T PRK14086 415 LSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIR 491 (617)
T ss_pred EecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 677663 457889998 8754 77999999999999999998876654 22335677777655 67788888888
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHh
Q 015875 358 AGMFAIRARRKTVTEKDFLDAVNKVIK 384 (399)
Q Consensus 358 A~~~A~~~~~~~It~ed~~~ai~~v~~ 384 (399)
...++...+ ..||.+.+.++++.+..
T Consensus 492 L~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 492 VTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 776665544 44777777777766543
No 95
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=2.4e-16 Score=163.45 Aligned_cols=205 Identities=21% Similarity=0.244 Sum_probs=147.4
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc----------
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------- 202 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~---------- 202 (399)
+++.+.+|++|+|++.+++.|+.++.. | +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 568899999999999999999999875 1 345568999999999999999999987642
Q ss_pred ----------------eEEEeccchhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHH
Q 015875 203 ----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 262 (399)
Q Consensus 203 ----------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~ 262 (399)
++.++++.. .+-..++++.+.+. .....|++|||+|.| +...+
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----------t~~A~ 135 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----------TTAGF 135 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------CHHHH
Confidence 122222110 12233444443332 234569999999999 66778
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHH
Q 015875 263 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 341 (399)
Q Consensus 263 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~ 341 (399)
+.|+..|++ ...++++|++|+.+..+.+++++ |+ ..++|..++.++..+.+...++..+.. .+..+..++.
T Consensus 136 NALLK~LEE-----pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 136 NALLKIVEE-----PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred HHHHHHHhc-----CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 888777775 35678888888888999999998 86 789999999999999888888776643 2223455666
Q ss_pred HCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Q 015875 342 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDA 378 (399)
Q Consensus 342 ~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~a 378 (399)
.+.| +.+++.+++..+..++ +...||.+++...
T Consensus 208 ~s~G-dlR~aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 208 AGGG-SPRDTLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred HcCC-CHHHHHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 5544 6667777777665443 3456777776655
No 96
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.2e-16 Score=164.64 Aligned_cols=207 Identities=13% Similarity=0.197 Sum_probs=147.7
Q ss_pred cceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc-------
Q 015875 130 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------- 202 (399)
Q Consensus 130 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~------- 202 (399)
.+.+.++|.+|++++|++.+++.|..++.. -..+.++||+||+|+|||++|+++|+.+.+.
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~ 72 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDC 72 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 356678999999999999999999998864 1345689999999999999999999987531
Q ss_pred -----------------eEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHH
Q 015875 203 -----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 261 (399)
Q Consensus 203 -----------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~ 261 (399)
++.++++. ..+-..++.+...+.. ....|++|||+|.+ +...
T Consensus 73 Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L-----------t~~A 135 (605)
T PRK05896 73 CNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML-----------STSA 135 (605)
T ss_pred CcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC-----------CHHH
Confidence 22222211 0122335555554432 23469999999998 5566
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHH
Q 015875 262 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 340 (399)
Q Consensus 262 ~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la 340 (399)
++.|+..+++ +...+++|++|+.+..+.+++++ |+ ..++|+.|+..+....++..+...+.. .+..+..++
T Consensus 136 ~NaLLKtLEE-----Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La 207 (605)
T PRK05896 136 WNALLKTLEE-----PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIA 207 (605)
T ss_pred HHHHHHHHHh-----CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7778877775 34577888888888999999998 88 689999999999999888877665532 233356777
Q ss_pred HHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Q 015875 341 RLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDA 378 (399)
Q Consensus 341 ~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~a 378 (399)
..+.| +.+++.+++..+..++ +. .||.+++...
T Consensus 208 ~lS~G-dlR~AlnlLekL~~y~---~~-~It~e~V~el 240 (605)
T PRK05896 208 DLADG-SLRDGLSILDQLSTFK---NS-EIDIEDINKT 240 (605)
T ss_pred HHcCC-cHHHHHHHHHHHHhhc---CC-CCCHHHHHHH
Confidence 77765 5566666666543332 32 3888776663
No 97
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.73 E-value=2.5e-16 Score=153.16 Aligned_cols=209 Identities=22% Similarity=0.291 Sum_probs=143.3
Q ss_pred cccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC-----Cc
Q 015875 128 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----AC 202 (399)
Q Consensus 128 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~-----~~ 202 (399)
+.+|.+.+.|.+|++++|++++++.++.++.. + ...+++|+||||||||++++++++++. ..
T Consensus 4 ~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~ 70 (319)
T PRK00440 4 EEIWVEKYRPRTLDEIVGQEEIVERLKSYVKE-----------K--NMPHLLFAGPPGTGKTTAALALARELYGEDWREN 70 (319)
T ss_pred cCccchhhCCCcHHHhcCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 45788999999999999999999999999864 1 122589999999999999999999863 34
Q ss_pred eEEEeccchhhhhhchhHHHHHHHHH-HHHc-----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC
Q 015875 203 FIRVIGSELVQKYVGEGARMVRELFQ-MARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD 276 (399)
Q Consensus 203 ~i~v~~s~l~~~~~g~~~~~v~~~f~-~a~~-----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~ 276 (399)
++.+++++-.. ...++..+. .+.. ..+.+|+|||+|.+ ..+.+..+..+++..
T Consensus 71 ~i~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l-----------~~~~~~~L~~~le~~---- 129 (319)
T PRK00440 71 FLELNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL-----------TSDAQQALRRTMEMY---- 129 (319)
T ss_pred eEEeccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC-----------CHHHHHHHHHHHhcC----
Confidence 55555443211 111222211 1111 23569999999998 445566666666542
Q ss_pred CCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHH
Q 015875 277 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVC 355 (399)
Q Consensus 277 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~ 355 (399)
..++.+|+++|.+..+.+++.+ |+ ..++|++|+.++...+++.+++..++. ....++.++..+.| +++.+.
T Consensus 130 -~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g----d~r~~~ 201 (319)
T PRK00440 130 -SQNTRFILSCNYSSKIIDPIQS--RC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG----DMRKAI 201 (319)
T ss_pred -CCCCeEEEEeCCccccchhHHH--Hh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHH
Confidence 2345677788887777778887 77 469999999999999999988776653 23346677777654 444444
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHH
Q 015875 356 TEAGMFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 356 ~~A~~~A~~~~~~~It~ed~~~ai~ 380 (399)
+.....+.. ...||.+++..++.
T Consensus 202 ~~l~~~~~~--~~~it~~~v~~~~~ 224 (319)
T PRK00440 202 NALQAAAAT--GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHHHc--CCCCCHHHHHHHhC
Confidence 444333322 35689988877754
No 98
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.5e-16 Score=164.65 Aligned_cols=207 Identities=14% Similarity=0.186 Sum_probs=144.8
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc--------
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 202 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~-------- 202 (399)
+.+++.+.+|++|+|++.+++.|+.++.. + +-+..+||+||+|||||++|+.+|+.+.+.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC 73 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC 73 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence 35678899999999999999999999875 1 234579999999999999999999988653
Q ss_pred ----------------eEEEeccchhhhhhchhHHHHHHHHHHH----HcCCCEEEEEecCCcccCCccCCCCCCChHHH
Q 015875 203 ----------------FIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 262 (399)
Q Consensus 203 ----------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a----~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~ 262 (399)
++.+++..- .+-..++.+.+.+ ......||||||+|.+ +.+.+
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-----------t~~a~ 136 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-----------TREAF 136 (624)
T ss_pred cccHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-----------CHHHH
Confidence 333332110 0112233332222 2344569999999999 56677
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHH
Q 015875 263 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 341 (399)
Q Consensus 263 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~ 341 (399)
+.|+..+++ ...++++|++|+.+..+.+.+++ |+ ..++|+.++.++...+|+..+...+.. ....++.|+.
T Consensus 137 naLLk~LEE-----P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~ 208 (624)
T PRK14959 137 NALLKTLEE-----PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIAR 208 (624)
T ss_pred HHHHHHhhc-----cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777777764 34578888888888888888888 88 688999999999999998877765542 2334567777
Q ss_pred HCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 342 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 342 ~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
.+.| +.+++.+++..+ + ..+...||.+++.+++
T Consensus 209 ~s~G-dlR~Al~lLeql---l-~~g~~~It~d~V~~~l 241 (624)
T PRK14959 209 RAAG-SVRDSMSLLGQV---L-ALGESRLTIDGARGVL 241 (624)
T ss_pred HcCC-CHHHHHHHHHHH---H-HhcCCCcCHHHHHHHh
Confidence 7755 444554554433 2 2344578888766554
No 99
>PRK08727 hypothetical protein; Validated
Probab=99.73 E-value=6.2e-16 Score=144.21 Aligned_cols=210 Identities=16% Similarity=0.233 Sum_probs=137.7
Q ss_pred eecCCCCcccc-ccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEe
Q 015875 132 VEEKPDVTYND-VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVI 207 (399)
Q Consensus 132 ~~~~~~~~~~~-i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~ 207 (399)
+...+..+|++ ++|.+.....+...... .....++|+||+|||||+|++++++++ +...+.++
T Consensus 10 ~~~~~~~~f~~f~~~~~n~~~~~~~~~~~-------------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 10 LRYPSDQRFDSYIAAPDGLLAQLQALAAG-------------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CCCCCcCChhhccCCcHHHHHHHHHHHhc-------------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 33456778888 56666666555443321 123469999999999999999998764 55556666
Q ss_pred ccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 015875 208 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 287 (399)
Q Consensus 208 ~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 287 (399)
..++.. .+...++... ...+|+|||+|.+.+ ....+..++.+++.... . +..+|+|+
T Consensus 77 ~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~---------~~~~~~~lf~l~n~~~~---~-~~~vI~ts 133 (233)
T PRK08727 77 LQAAAG--------RLRDALEALE--GRSLVALDGLESIAG---------QREDEVALFDFHNRARA---A-GITLLYTA 133 (233)
T ss_pred HHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccC---------ChHHHHHHHHHHHHHHH---c-CCeEEEEC
Confidence 544332 2223444333 345999999999854 34456777888877642 2 34466666
Q ss_pred CC-CCC---CCccccCCCCc--eeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHH
Q 015875 288 NR-PDT---LDPALLRPGRL--DRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGM 360 (399)
Q Consensus 288 n~-~~~---ld~al~r~gRf--~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~ 360 (399)
|. |.. +++++.+ || ...+++++|+.+++..|++.++...++. ++...+.|+..+.| ..+.+.++++....
T Consensus 134 ~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~ 210 (233)
T PRK08727 134 RQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDR 210 (233)
T ss_pred CCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 64 444 4789998 86 4588999999999999999877654432 23346777777764 33444445665554
Q ss_pred HHHHHcCCCccHHHHHHHHHH
Q 015875 361 FAIRARRKTVTEKDFLDAVNK 381 (399)
Q Consensus 361 ~A~~~~~~~It~ed~~~ai~~ 381 (399)
.+...+ ..||.+.+.+.+..
T Consensus 211 ~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 211 ESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHhC-CCCCHHHHHHHHhh
Confidence 454444 46999998887753
No 100
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.73 E-value=5.4e-16 Score=144.82 Aligned_cols=209 Identities=14% Similarity=0.170 Sum_probs=139.6
Q ss_pred ecCCCCcccccc--CcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC---CceEEEe
Q 015875 133 EEKPDVTYNDVG--GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVI 207 (399)
Q Consensus 133 ~~~~~~~~~~i~--G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~---~~~i~v~ 207 (399)
...++.+|++.+ +...++..++++... ....+++||||||||||||++++++++. ..+..+.
T Consensus 14 ~~~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 14 YLPDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred CCCCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 345677888843 466677777776543 2234799999999999999999998653 3455555
Q ss_pred ccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 015875 208 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 287 (399)
Q Consensus 208 ~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 287 (399)
....... ..++.+.... ..+|+|||++.+.+ +...+..+..+++.+.. .++..+|+|+
T Consensus 81 ~~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~e---~g~~~li~ts 138 (235)
T PRK08084 81 LDKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRILE---SGRTRLLITG 138 (235)
T ss_pred HHHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHHH---cCCCeEEEeC
Confidence 5432211 1122222222 24999999999844 46677888888877542 3444455555
Q ss_pred C-CCCC---CCccccCCCCce--eEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHH
Q 015875 288 N-RPDT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGM 360 (399)
Q Consensus 288 n-~~~~---ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~ 360 (399)
+ .|.. +.|.|++ |+. .++++.+|+.+++.++++.+....++. ++.-.+.|+..+++ +.+.+..+++....
T Consensus 139 ~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~ 215 (235)
T PRK08084 139 DRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDR 215 (235)
T ss_pred CCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 5 4444 5789999 875 589999999999999998866654443 22336778888766 66677777777543
Q ss_pred HHHHHcCCCccHHHHHHHHH
Q 015875 361 FAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 361 ~A~~~~~~~It~ed~~~ai~ 380 (399)
.+.. ....||.+.+.+++.
T Consensus 216 ~~l~-~~~~it~~~~k~~l~ 234 (235)
T PRK08084 216 ASIT-AQRKLTIPFVKEILK 234 (235)
T ss_pred HHHh-cCCCCCHHHHHHHHc
Confidence 4433 344599988887753
No 101
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.2e-16 Score=165.05 Aligned_cols=207 Identities=19% Similarity=0.250 Sum_probs=151.1
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc---------
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 202 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~--------- 202 (399)
..++.|.+|++|+|++.+++.|..++.. -+.+..+||+||||+|||++|+.+|+.+++.
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 3457889999999999999999999875 1345568999999999999999999988652
Q ss_pred ---------------eEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHH
Q 015875 203 ---------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 263 (399)
Q Consensus 203 ---------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~ 263 (399)
++.++++. ......++++...+.. ....|++|||+|.+ +.+.++
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-----------s~~a~n 137 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-----------SKSAFN 137 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-----------CHHHHH
Confidence 12222110 1123445666665543 33469999999999 566677
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHH
Q 015875 264 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 342 (399)
Q Consensus 264 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~ 342 (399)
.|+..+++ ....+.+|++|+.+..+.+.+++ |+ ..++|+.++.++....+...+...++. ....+..++..
T Consensus 138 aLLK~LEe-----pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~ 209 (527)
T PRK14969 138 AMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARA 209 (527)
T ss_pred HHHHHHhC-----CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77777764 34677888888888888888888 88 899999999999998888877665543 22335667777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 015875 343 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 343 ~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~ 380 (399)
+.| +.+++.+++..|..+ +...|+.+++...+.
T Consensus 210 s~G-slr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 210 AAG-SMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 655 677888888776544 456688888877654
No 102
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.72 E-value=2.5e-16 Score=155.71 Aligned_cols=208 Identities=21% Similarity=0.325 Sum_probs=147.3
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc--------
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 202 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~-------- 202 (399)
+.++.++.+|++++|++.+++.|.+.+.. | ..+..+|||||||+|||++|+++++.+.+.
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c 71 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPC 71 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 45677899999999999999999998864 1 345679999999999999999999986432
Q ss_pred ----------------eEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHH
Q 015875 203 ----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 262 (399)
Q Consensus 203 ----------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~ 262 (399)
++.+++.. ......++.+++.+.. ....+++|||+|.+ +...+
T Consensus 72 ~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-----------~~~~~ 134 (355)
T TIGR02397 72 NECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML-----------SKSAF 134 (355)
T ss_pred CCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc-----------CHHHH
Confidence 22333221 1123345666665543 23469999999998 44455
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHH
Q 015875 263 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 341 (399)
Q Consensus 263 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~ 341 (399)
+.++..++. ...++++|++|+.++.+.+++++ |+ ..++|++|+.++...+++.+++..+.. .+.....++.
T Consensus 135 ~~Ll~~le~-----~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~ 206 (355)
T TIGR02397 135 NALLKTLEE-----PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIAR 206 (355)
T ss_pred HHHHHHHhC-----CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555542 34567788888888888889988 87 689999999999999999988776643 2233566677
Q ss_pred HCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 015875 342 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 342 ~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~ 380 (399)
.+.| +++.+.+.+..+..++ ...||.+|+.+++.
T Consensus 207 ~~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 207 AADG-SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred HcCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 7755 5566666665555443 23488888876553
No 103
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.72 E-value=7e-16 Score=143.21 Aligned_cols=203 Identities=15% Similarity=0.201 Sum_probs=139.4
Q ss_pred cCCCCcccccc--CcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec
Q 015875 134 EKPDVTYNDVG--GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 208 (399)
Q Consensus 134 ~~~~~~~~~i~--G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~ 208 (399)
..++.+|++.. +...++..++++.. +.....+++|+||+|||||+||+++++.. +..++.+++
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 35667888854 45666677777654 22345689999999999999999999865 667888888
Q ss_pred cchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 209 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 209 s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
.++... +. ....+.+|+|||+|.+ +...+..+..+++.... .+..++|++++
T Consensus 79 ~~~~~~------------~~--~~~~~~~liiDdi~~l-----------~~~~~~~L~~~~~~~~~---~~~~~vl~~~~ 130 (227)
T PRK08903 79 ASPLLA------------FD--FDPEAELYAVDDVERL-----------DDAQQIALFNLFNRVRA---HGQGALLVAGP 130 (227)
T ss_pred HHhHHH------------Hh--hcccCCEEEEeChhhc-----------CchHHHHHHHHHHHHHH---cCCcEEEEeCC
Confidence 765321 11 1223569999999998 44557778888876542 33444555554
Q ss_pred CC---CCCCccccCCCCc--eeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHH
Q 015875 289 RP---DTLDPALLRPGRL--DRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFA 362 (399)
Q Consensus 289 ~~---~~ld~al~r~gRf--~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A 362 (399)
.+ ..+.+.+.+ || ...+++++|+.+++..+++......++. ++...+.|+...+| +.+++..+++.....|
T Consensus 131 ~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 131 AAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYS 207 (227)
T ss_pred CCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 32 234566776 66 4699999999999989988876655443 22235666665544 6678888888766666
Q ss_pred HHHcCCCccHHHHHHHHH
Q 015875 363 IRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 363 ~~~~~~~It~ed~~~ai~ 380 (399)
...+ ..||...+.+++.
T Consensus 208 ~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 208 LEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHhC-CCCCHHHHHHHHh
Confidence 4444 5799998888764
No 104
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.71 E-value=1.2e-16 Score=173.77 Aligned_cols=170 Identities=25% Similarity=0.345 Sum_probs=136.2
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CCce
Q 015875 134 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACF 203 (399)
Q Consensus 134 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~~~ 203 (399)
...+-.+++++|.+..++++.+++.. ....+++|+||||||||++|+++|..+ +.++
T Consensus 171 ~~r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~ 237 (857)
T PRK10865 171 RAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 237 (857)
T ss_pred HHhcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEE
Confidence 44567788999999998888887765 334579999999999999999999987 6788
Q ss_pred EEEeccchh--hhhhchhHHHHHHHHHHHH-cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 015875 204 IRVIGSELV--QKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 280 (399)
Q Consensus 204 i~v~~s~l~--~~~~g~~~~~v~~~f~~a~-~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 280 (399)
+.++...+. .++.|+.+..++.+|..+. ...++||||||+|.+.+....+ +..+.++.|...+ .++.
T Consensus 238 ~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~---~~~d~~~~lkp~l-------~~g~ 307 (857)
T PRK10865 238 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPAL-------ARGE 307 (857)
T ss_pred EEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc---cchhHHHHhcchh-------hcCC
Confidence 888888876 4688999999999998764 3568899999999998765322 2344555555443 3678
Q ss_pred eEEEEecCCCC-----CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccC
Q 015875 281 IKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN 329 (399)
Q Consensus 281 v~vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~ 329 (399)
+.+|+||+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+...+.
T Consensus 308 l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 308 LHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred CeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 99999998865 48999999 995 688999999999999988776543
No 105
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.71 E-value=2.4e-16 Score=156.99 Aligned_cols=183 Identities=21% Similarity=0.312 Sum_probs=128.9
Q ss_pred ccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCce---------------
Q 015875 139 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF--------------- 203 (399)
Q Consensus 139 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~--------------- 203 (399)
.|++|+|++.+++.|++++......+ ..++...+.++||+||||+|||++|+++|+.+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 57899999999999999998754322 223344677899999999999999999999765431
Q ss_pred --------EEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHH
Q 015875 204 --------IRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 271 (399)
Q Consensus 204 --------i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 271 (399)
..+.... ..-+-..++.+++.+.. ....|+||||+|.+ +...++.|+..+++
T Consensus 80 ~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-----------~~~aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-----------TERAANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-----------CHHHHHHHHHHhhc
Confidence 1111110 01122346677776643 34469999999999 66677888887764
Q ss_pred hcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHH
Q 015875 272 LDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADI 351 (399)
Q Consensus 272 l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di 351 (399)
+..++++|.+|+.++.+.|++++ |+ ..+.|++|+.++..+++... .+.. ......++..+.|..+..+
T Consensus 144 -----p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 144 -----PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred -----CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHH
Confidence 34455566666668999999999 88 79999999999988777632 2332 2335577888888776444
Q ss_pred H
Q 015875 352 R 352 (399)
Q Consensus 352 ~ 352 (399)
.
T Consensus 212 ~ 212 (394)
T PRK07940 212 R 212 (394)
T ss_pred H
Confidence 3
No 106
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=3.4e-16 Score=163.50 Aligned_cols=204 Identities=20% Similarity=0.304 Sum_probs=150.1
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc----------
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------- 202 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~---------- 202 (399)
+++.|.+|++|+|++.+++.|+.++.. | +.+..+|||||+|+|||++|+++|+.+.+.
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 567889999999999999999999875 1 345678999999999999999999987542
Q ss_pred --------------eEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHH
Q 015875 203 --------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRT 264 (399)
Q Consensus 203 --------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~ 264 (399)
++.+++.. ..+-..++++...+.. ....|++|||+|.+ +...++.
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----------t~~a~na 138 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----------STNAFNA 138 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----------CHHHHHH
Confidence 23333211 1123345566555432 33469999999999 5667788
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHC
Q 015875 265 MLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLC 343 (399)
Q Consensus 265 l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~ 343 (399)
|+..|++ +..++++|++|+.++.|.+.+++ |+ ..++|..++..+....+...++..++. ....+..++..+
T Consensus 139 LLk~LEe-----pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a 210 (576)
T PRK14965 139 LLKTLEE-----PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKG 210 (576)
T ss_pred HHHHHHc-----CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 8888775 35678888888999999999998 88 789999999999888888877766543 233466777777
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Q 015875 344 PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDA 378 (399)
Q Consensus 344 ~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~a 378 (399)
.| +.+++.+++..+..+. + ..||.+|+...
T Consensus 211 ~G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 211 DG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred CC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 66 5567777766655543 2 34787776654
No 107
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.71 E-value=3e-16 Score=170.56 Aligned_cols=203 Identities=26% Similarity=0.341 Sum_probs=152.4
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CCceE
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFI 204 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~~~i 204 (399)
..+-.++.++|.++.++++.+++.. +..++++|+||||||||++|+++|... +.+++
T Consensus 173 a~~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~ 239 (821)
T CHL00095 173 AIDGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVI 239 (821)
T ss_pred HHcCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 3455678899999999999998865 345689999999999999999999975 47899
Q ss_pred EEeccchh--hhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeE
Q 015875 205 RVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 282 (399)
Q Consensus 205 ~v~~s~l~--~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 282 (399)
.++++.+. .+|.|+.+..++.+++.+....++||||||||.+.+..... ++....+.|...+. ++.+.
T Consensus 240 ~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~~~a~lLkp~l~-------rg~l~ 309 (821)
T CHL00095 240 TLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAIDAANILKPALA-------RGELQ 309 (821)
T ss_pred EeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---CcccHHHHhHHHHh-------CCCcE
Confidence 99998887 47889999999999999988888999999999998765322 22334444444433 67899
Q ss_pred EEEecCCCC-----CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhc----cCCC-CcccHHHHHHHCCCCc-----
Q 015875 283 VLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT----MNCE-RDIRFELLARLCPNST----- 347 (399)
Q Consensus 283 vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~----~~~~-~~~~~~~la~~~~g~s----- 347 (399)
+|++|+..+ ..|+++.+ || ..|.++.|+.++...|++..... .++. .+..+..++.++.+|.
T Consensus 310 ~IgaTt~~ey~~~ie~D~aL~r--Rf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~l 386 (821)
T CHL00095 310 CIGATTLDEYRKHIEKDPALER--RF-QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFL 386 (821)
T ss_pred EEEeCCHHHHHHHHhcCHHHHh--cc-eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccC
Confidence 999998753 47899999 99 56899999999999988765432 2221 2233566667776663
Q ss_pred HHHHHHHHHHHHHHHH
Q 015875 348 GADIRSVCTEAGMFAI 363 (399)
Q Consensus 348 g~di~~l~~~A~~~A~ 363 (399)
|.-...++.+|+....
T Consensus 387 Pdkaidlld~a~a~~~ 402 (821)
T CHL00095 387 PDKAIDLLDEAGSRVR 402 (821)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3445566777766443
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=7e-16 Score=153.45 Aligned_cols=214 Identities=17% Similarity=0.245 Sum_probs=144.4
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccc
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 210 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~ 210 (399)
+.+++.|.+|++++|++.+++.++..+.. | ..+.++|||||||+|||++|+++++.+.++.....+..
T Consensus 7 ~~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~ 74 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNED 74 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 45678899999999999999999999875 1 34568999999999999999999998755211110000
Q ss_pred hh------hhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 015875 211 LV------QKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 280 (399)
Q Consensus 211 l~------~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 280 (399)
+. ..........++.+++.+.. ..+.+|+|||+|.+ ....++.++..++. ....
T Consensus 75 ~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l-----------~~~~~~~ll~~le~-----~~~~ 138 (367)
T PRK14970 75 FSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHML-----------SSAAFNAFLKTLEE-----PPAH 138 (367)
T ss_pred CCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhc-----------CHHHHHHHHHHHhC-----CCCc
Confidence 00 00011123455666665542 34569999999988 34445555554442 2345
Q ss_pred eEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHH
Q 015875 281 IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAG 359 (399)
Q Consensus 281 v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~ 359 (399)
.++|++|+.+..+.+++.+ |+ ..++|+.|+.++...++...+.+.++. .+..++.++..+.| +.+.+.+.++...
T Consensus 139 ~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 139 AIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred eEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 6677777778888899988 77 578999999999999888888776653 33446667777654 5555555555554
Q ss_pred HHHHHHcCCCccHHHHHHHHH
Q 015875 360 MFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 360 ~~A~~~~~~~It~ed~~~ai~ 380 (399)
.++ +.. ||.+++...+.
T Consensus 215 ~y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 215 TFC---GKN-ITRQAVTENLN 231 (367)
T ss_pred Hhc---CCC-CCHHHHHHHhC
Confidence 443 333 78777776543
No 109
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=7.5e-16 Score=156.45 Aligned_cols=206 Identities=17% Similarity=0.238 Sum_probs=141.9
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc---------
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 202 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~--------- 202 (399)
.+++.|.+|++|+|++.+++.|+..+.. -..+..+|||||||+|||++|+++|+.+.+.
T Consensus 8 ~~kyRP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c 75 (451)
T PRK06305 8 SRKYRPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC 75 (451)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC
Confidence 4567889999999999999999999874 1345679999999999999999999987442
Q ss_pred ----------------eEEEeccchhhhhhchhHHHHHHHHHHH----HcCCCEEEEEecCCcccCCccCCCCCCChHHH
Q 015875 203 ----------------FIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 262 (399)
Q Consensus 203 ----------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a----~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~ 262 (399)
++.+++... . +-..++.+.+.+ ......|++|||+|.+ ..+.+
T Consensus 76 ~~c~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~l-----------t~~~~ 138 (451)
T PRK06305 76 NQCASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHML-----------TKEAF 138 (451)
T ss_pred cccHHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-----------CHHHH
Confidence 223332111 0 112233333222 2245679999999999 55567
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHH
Q 015875 263 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 341 (399)
Q Consensus 263 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~ 341 (399)
+.|+..+++ ....+.+|++|+.+..+.+++++ |+ ..++|+.++.++....+...++..+.. ....++.|+.
T Consensus 139 n~LLk~lEe-----p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~ 210 (451)
T PRK06305 139 NSLLKTLEE-----PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIAR 210 (451)
T ss_pred HHHHHHhhc-----CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777766664 34577788888888889999998 88 689999999999999888877765543 2334667777
Q ss_pred HCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 342 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 342 ~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
.+.| +.+.+.+.+..+..+ .+ ..||.+++.+++
T Consensus 211 ~s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 211 AAQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HcCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 7755 444444444433322 12 347777765544
No 110
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=7.1e-16 Score=161.92 Aligned_cols=212 Identities=18% Similarity=0.299 Sum_probs=150.0
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEE---e
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV---I 207 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v---~ 207 (399)
+..+++|.+|++|+|++.+++.|+.++.. -..+..+||+||+|+|||++|+++|+.+.+.--.. .
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p 75 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP 75 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence 45678999999999999999999999975 13456789999999999999999999876531100 1
Q ss_pred ccchh---hh----h--hc---hhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHH
Q 015875 208 GSELV---QK----Y--VG---EGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 271 (399)
Q Consensus 208 ~s~l~---~~----~--~g---~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 271 (399)
|.... +. + -+ .+...++.+.+.+.. ....|++|||+|.| ....++.|+..|++
T Consensus 76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-----------T~~A~NALLKtLEE 144 (725)
T PRK07133 76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML-----------SKSAFNALLKTLEE 144 (725)
T ss_pred hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC-----------CHHHHHHHHHHhhc
Confidence 11100 00 0 00 123446666666543 44569999999998 45667777777764
Q ss_pred hcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHH
Q 015875 272 LDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGAD 350 (399)
Q Consensus 272 l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~d 350 (399)
+...+++|++|+.++.|.+.+++ |+ ..++|.+|+.++....++..+.+.++. ....+..++..+.| +.++
T Consensus 145 -----PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~ 215 (725)
T PRK07133 145 -----PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRD 215 (725)
T ss_pred -----CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 35577888888889999999998 88 689999999999999998877766543 22235677777765 5566
Q ss_pred HHHHHHHHHHHHHHHcCCCccHHHHHHH
Q 015875 351 IRSVCTEAGMFAIRARRKTVTEKDFLDA 378 (399)
Q Consensus 351 i~~l~~~A~~~A~~~~~~~It~ed~~~a 378 (399)
+..++..+..+. ...||.+++.++
T Consensus 216 AlslLekl~~y~----~~~It~e~V~el 239 (725)
T PRK07133 216 ALSIAEQVSIFG----NNKITLKNVEEL 239 (725)
T ss_pred HHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 666666654432 234777777654
No 111
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.70 E-value=3.5e-16 Score=170.58 Aligned_cols=204 Identities=22% Similarity=0.271 Sum_probs=151.3
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CCc
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DAC 202 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~~ 202 (399)
+...+-.++.++|.++.++++.+++.. ....+++|+||||||||++|+++|..+ +.+
T Consensus 165 ~~~~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~ 231 (852)
T TIGR03346 165 ERAREGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKR 231 (852)
T ss_pred HHhhCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCe
Confidence 345666788899999998888887754 344578999999999999999999975 667
Q ss_pred eEEEeccchh--hhhhchhHHHHHHHHHHHHc-CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 015875 203 FIRVIGSELV--QKYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 279 (399)
Q Consensus 203 ~i~v~~s~l~--~~~~g~~~~~v~~~f~~a~~-~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 279 (399)
++.++...+. .+|.|+.+..++.+|..+.. ..+.||||||||.+.+.+..+ +..+..+.|... ..++
T Consensus 232 ~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~~~Lk~~-------l~~g 301 (852)
T TIGR03346 232 LLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GAMDAGNMLKPA-------LARG 301 (852)
T ss_pred EEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---chhHHHHHhchh-------hhcC
Confidence 8888887775 46889999999999998865 458899999999997654221 122333333332 2467
Q ss_pred CeEEEEecCCC-----CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCc-----ccHHHHHHHCCCCc--
Q 015875 280 NIKVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD-----IRFELLARLCPNST-- 347 (399)
Q Consensus 280 ~v~vI~atn~~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~-----~~~~~la~~~~g~s-- 347 (399)
.+.+|++|+.. -.+|+++.| || ..|.++.|+.+++..|++.+...+..... ..+..++.++..|.
T Consensus 302 ~i~~IgaTt~~e~r~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~ 378 (852)
T TIGR03346 302 ELHCIGATTLDEYRKYIEKDAALER--RF-QPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITD 378 (852)
T ss_pred ceEEEEeCcHHHHHHHhhcCHHHHh--cC-CEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccc
Confidence 89999999875 357999999 99 56899999999999999988776554322 23455666666553
Q ss_pred ---HHHHHHHHHHHHHHH
Q 015875 348 ---GADIRSVCTEAGMFA 362 (399)
Q Consensus 348 ---g~di~~l~~~A~~~A 362 (399)
|.-...++.+|+..+
T Consensus 379 r~lPdkAidlld~a~a~~ 396 (852)
T TIGR03346 379 RFLPDKAIDLIDEAAARI 396 (852)
T ss_pred cCCchHHHHHHHHHHHHH
Confidence 344556666666544
No 112
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.70 E-value=7.7e-16 Score=156.13 Aligned_cols=221 Identities=20% Similarity=0.308 Sum_probs=145.1
Q ss_pred cCCCCccccc-cCcHHH--HHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-----CCceEE
Q 015875 134 EKPDVTYNDV-GGCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIR 205 (399)
Q Consensus 134 ~~~~~~~~~i-~G~~~~--~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-----~~~~i~ 205 (399)
..+..+|++. +|.+.. ...+.++...+ | ...+++||||||+|||+|++++++++ +..+++
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~----------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~y 165 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKNP----------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhCc----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEE
Confidence 4677899994 464433 23333333221 1 13469999999999999999999975 457888
Q ss_pred EeccchhhhhhchhH-HHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 015875 206 VIGSELVQKYVGEGA-RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 284 (399)
Q Consensus 206 v~~s~l~~~~~g~~~-~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI 284 (399)
+++.++...+..... ..+.. |.......+.+|+|||++.+.+ ....+..++.+++.+.. .+..+||
T Consensus 166 i~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~---------~~~~q~elf~~~n~l~~---~~k~iIi 232 (440)
T PRK14088 166 ITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG---------KTGVQTELFHTFNELHD---SGKQIVI 232 (440)
T ss_pred EEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC---------cHHHHHHHHHHHHHHHH---cCCeEEE
Confidence 898887766543321 11222 2222223567999999999854 23456667777776542 2333344
Q ss_pred EecCCCCC---CCccccCCCCce--eEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHH
Q 015875 285 MATNRPDT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEA 358 (399)
Q Consensus 285 ~atn~~~~---ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A 358 (399)
++.+.|.. +.+.+.+ ||. ..+.+.+|+.+.|..|++..+...++. ++..++.|+....+ +.+++..+++..
T Consensus 233 tsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 233 CSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred ECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 44445543 5677888 774 488999999999999999988754433 22236777777755 667888888877
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 359 GMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 359 ~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
..++...+ ..||.+.+.++++...
T Consensus 310 ~~~~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 310 LVYKETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 66665544 4488888877777664
No 113
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.5e-16 Score=162.22 Aligned_cols=167 Identities=25% Similarity=0.412 Sum_probs=133.9
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh------h-
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV------Q- 213 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~------~- 213 (399)
+|--|++++++++.++|.--... |-...+-++|+||||+|||+++|+||+.++..|++++...+. +
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 46889999999999998753222 334566799999999999999999999999999999764432 2
Q ss_pred --hhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHH------hcCC----CCCCCe
Q 015875 214 --KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ------LDGF----DARGNI 281 (399)
Q Consensus 214 --~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~------l~~~----~~~~~v 281 (399)
.|+|..++.+-+.+.......| +++|||||.+++. ..+++ ..+|+++|+- +|.+ -.-++|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g-----~qGDP--asALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSG-----HQGDP--ASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCC-----CCCCh--HHHHHHhcChhhccchhhhccccccchhhe
Confidence 4889988888888888888889 9999999999731 12233 4567777642 1111 123579
Q ss_pred EEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHH
Q 015875 282 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 325 (399)
Q Consensus 282 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~ 325 (399)
.+|||+|..+.++++|+. |+ ..|+++-+..++..+|.+.|+
T Consensus 556 LFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 999999999999999999 99 899999999999999999887
No 114
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.1e-15 Score=156.33 Aligned_cols=213 Identities=20% Similarity=0.247 Sum_probs=146.3
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc-------e
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------F 203 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~-------~ 203 (399)
+..+++|.+|++++|++.+++.|+.++.. -..+..+|||||+|+|||++|+.+|..+++. +
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc 73 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC 73 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCC
Confidence 34567889999999999999999999975 1334568999999999999999999987641 1
Q ss_pred EE-Eeccchhh----------hhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHH
Q 015875 204 IR-VIGSELVQ----------KYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI 268 (399)
Q Consensus 204 i~-v~~s~l~~----------~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 268 (399)
-. .+|..+.. .....+...++.+.+.+.. ..+.|++|||+|.+ +...++.|+..
T Consensus 74 ~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-----------t~~a~naLLk~ 142 (486)
T PRK14953 74 GKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML-----------TKEAFNALLKT 142 (486)
T ss_pred CccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc-----------CHHHHHHHHHH
Confidence 00 01111100 0001122334555444432 34569999999998 45566677666
Q ss_pred HHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCc
Q 015875 269 VNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNST 347 (399)
Q Consensus 269 l~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 347 (399)
+++ +...+++|++|+.++.+.+++.+ |+ ..+.|++|+.++...+++.+++..++. ....+..++..+.| +
T Consensus 143 LEe-----pp~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~ 213 (486)
T PRK14953 143 LEE-----PPPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-G 213 (486)
T ss_pred Hhc-----CCCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 653 34466777777778888888888 87 579999999999999999988877654 22335667777655 5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 348 GADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 348 g~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
.+++.++++.+..+ +...||.+++.+++
T Consensus 214 lr~al~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 214 MRDAASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 56666666666543 24468888887754
No 115
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.6e-15 Score=155.43 Aligned_cols=205 Identities=20% Similarity=0.253 Sum_probs=149.4
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc---------
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 202 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~--------- 202 (399)
.++++|.+|++++|++.+++.|+..+.. | ..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~ 72 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD 72 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 4568899999999999999999999864 1 345678999999999999999999986321
Q ss_pred ---------------eEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHH
Q 015875 203 ---------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 263 (399)
Q Consensus 203 ---------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~ 263 (399)
++.++++. ..+-..++++...+.. ....|++|||+|.+ +.+.++
T Consensus 73 ~C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~N 135 (535)
T PRK08451 73 TCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAFN 135 (535)
T ss_pred ccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHH
Confidence 22222211 0112445555544321 23459999999999 677888
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHH
Q 015875 264 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 342 (399)
Q Consensus 264 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~ 342 (399)
.|+..+++ +...+.+|++|+.+..+.+++++ |+ ..++|.+++.++....++..+...++. ....+..++..
T Consensus 136 ALLK~LEE-----pp~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~ 207 (535)
T PRK08451 136 ALLKTLEE-----PPSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARS 207 (535)
T ss_pred HHHHHHhh-----cCCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888875 34567788888888999999999 86 789999999999999888888766543 23345677777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Q 015875 343 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDA 378 (399)
Q Consensus 343 ~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~a 378 (399)
+.| +.+++.+++..|..++ ...||.+++...
T Consensus 208 s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 208 GNG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred cCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 765 7778888887766554 345777766544
No 116
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.69 E-value=1.2e-15 Score=144.87 Aligned_cols=190 Identities=25% Similarity=0.352 Sum_probs=129.5
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccc------hhhhhhchhHHHH-H--------------------HH
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE------LVQKYVGEGARMV-R--------------------EL 226 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~------l~~~~~g~~~~~v-~--------------------~~ 226 (399)
....+||+||||||||++|+++|+.++.+++.++|.. +++.+.+.....+ . .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3568999999999999999999999999999998754 3333322211111 1 11
Q ss_pred HHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc----CC-------CCCCCeEEEEecCCC-----
Q 015875 227 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GF-------DARGNIKVLMATNRP----- 290 (399)
Q Consensus 227 f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~~-------~~~~~v~vI~atn~~----- 290 (399)
+. |.. .+.+|+||||+.+ +++++..|+.++++-. +. ..+.++.||+|+|..
T Consensus 100 ~~-A~~-~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TL-AVR-EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HH-HHH-cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 11 112 2359999999998 7889999999997521 11 123467899999975
Q ss_pred CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHH-----H-CC-CCcHHHHHHHHHHHHHHHH
Q 015875 291 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLAR-----L-CP-NSTGADIRSVCTEAGMFAI 363 (399)
Q Consensus 291 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~-----~-~~-g~sg~di~~l~~~A~~~A~ 363 (399)
..+++++++ || ..+.++.|+.++-.+|++.+.. .... ..+.+.. + .+ ...++ +++.+..|...+.
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~-~~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~~~ 238 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAED-SAATIVRLVREFRASGDEITSG-LRASLMIAEVATQ 238 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHH-HHHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHHHH
Confidence 356888998 98 7899999999999999998752 2211 1222211 1 11 11222 5666666666665
Q ss_pred HHcCCCccHHHHHHHHHHHHh
Q 015875 364 RARRKTVTEKDFLDAVNKVIK 384 (399)
Q Consensus 364 ~~~~~~It~ed~~~ai~~v~~ 384 (399)
...+..++.+||.+.+..|..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 239 QDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred cCCCCCCCcHHHHHHHHHHhc
Confidence 667889999999999988764
No 117
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.2e-17 Score=173.02 Aligned_cols=164 Identities=26% Similarity=0.420 Sum_probs=131.6
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhCCCC----CCceeEeCCCCCcHHHHHHHHHHhcC---CceEEEeccchhhh-
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDP----PKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELVQK- 214 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~----~~~vLL~GppGtGKT~larala~~~~---~~~i~v~~s~l~~~- 214 (399)
++|+++++..+-++|.. .+.|+.. -.++||.||+|+|||-||+++|..+. ..++++++|+++.+
T Consensus 493 ViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH 564 (786)
T COG0542 493 VIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH 564 (786)
T ss_pred eeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH
Confidence 99999999999999986 4445533 34689999999999999999999885 78999999999865
Q ss_pred ----hhchhHHHHH-----HHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCC------
Q 015875 215 ----YVGEGARMVR-----ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG------ 279 (399)
Q Consensus 215 ----~~g~~~~~v~-----~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~------ 279 (399)
.+|.+++.|. .+.+..+.+.+|||+||||++. ++++.+.|+|+|+.-.-.+..+
T Consensus 565 sVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~VdFr 633 (786)
T COG0542 565 SVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTVDFR 633 (786)
T ss_pred HHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEEecc
Confidence 4566555443 4666677788899999999998 8999999999998643333333
Q ss_pred CeEEEEecCCC----------------------------CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhc
Q 015875 280 NIKVLMATNRP----------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 327 (399)
Q Consensus 280 ~v~vI~atn~~----------------------------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~ 327 (399)
|++||||||-- ..+.|+++. |+|.+|.|.+.+.+...+|+...+..
T Consensus 634 NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 634 NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence 68899999831 123467777 99999999999999999998877754
No 118
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.69 E-value=2.4e-15 Score=152.37 Aligned_cols=227 Identities=13% Similarity=0.238 Sum_probs=144.2
Q ss_pred cCCCCccccc-cCcHHHH--HHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEe
Q 015875 134 EKPDVTYNDV-GGCKEQI--EKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVI 207 (399)
Q Consensus 134 ~~~~~~~~~i-~G~~~~~--~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~ 207 (399)
..|..+|++. +|..... ..++++...+... +-.+.++++||||+|+|||+|++++++++ +..+++++
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~-------~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~ 176 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSEQG-------KGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR 176 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhccccc-------cCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee
Confidence 4677899994 4654442 3445444321100 01123579999999999999999999975 67888888
Q ss_pred ccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 015875 208 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 287 (399)
Q Consensus 208 ~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 287 (399)
+.++...+.......-...|.... ..+.+|+|||++.+.+ ....+..++.+++.+.. .+. .+|+|+
T Consensus 177 ~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~---------k~~~qeelf~l~N~l~~---~~k-~IIlts 242 (445)
T PRK12422 177 SELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSG---------KGATQEEFFHTFNSLHT---EGK-LIVISS 242 (445)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcC---------ChhhHHHHHHHHHHHHH---CCC-cEEEec
Confidence 877765543332111112333322 3456999999999854 34567778888876532 223 355555
Q ss_pred CC-C---CCCCccccCCCCce--eEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHH-
Q 015875 288 NR-P---DTLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAG- 359 (399)
Q Consensus 288 n~-~---~~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~- 359 (399)
+. | ..+++.+++ ||. ..+.+++|+.++|..|++..+...++. ++..++.|+....+ +.+++...++...
T Consensus 243 ~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~ 319 (445)
T PRK12422 243 TCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAK 319 (445)
T ss_pred CCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 54 4 456789998 885 688999999999999999988876643 22234556666654 3445555554442
Q ss_pred HHHHHH-cCCCccHHHHHHHHHHHHh
Q 015875 360 MFAIRA-RRKTVTEKDFLDAVNKVIK 384 (399)
Q Consensus 360 ~~A~~~-~~~~It~ed~~~ai~~v~~ 384 (399)
+.|... ....||.+++.+++.....
T Consensus 320 ~~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 320 RVAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 122222 2345888888888877643
No 119
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=7.9e-16 Score=154.40 Aligned_cols=216 Identities=14% Similarity=0.198 Sum_probs=146.0
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEE------
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR------ 205 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~------ 205 (399)
.+.+.|.+|++|+|++.+++.|+.++.. | +.+..+|||||||+|||++|+++|+.+.+.-..
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 3567889999999999999999998874 1 346679999999999999999999988653100
Q ss_pred ----Eeccc------hhh-------hhhc---hhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHH
Q 015875 206 ----VIGSE------LVQ-------KYVG---EGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEV 261 (399)
Q Consensus 206 ----v~~s~------l~~-------~~~g---~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~ 261 (399)
-.|.. +.. .+-+ .+...++++.+.+. .....++||||+|.+ +...
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l-----------~~~~ 143 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML-----------SIAA 143 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC-----------CHHH
Confidence 00100 000 0011 11334555544442 133469999999999 4555
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHH
Q 015875 262 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 340 (399)
Q Consensus 262 ~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la 340 (399)
++.++..+++ ....+++|++|+.+..+.+++.+ |+ ..++|++++.++....++..++..+.. .+..++.++
T Consensus 144 ~~~LLk~LEe-----p~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 144 FNAFLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred HHHHHHHHhc-----CCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6666666653 34466677777777788888887 77 589999999999888888877665532 233456777
Q ss_pred HHCCCCcHHHHHHHHHHHHHHHHH-HcCCCccHHHHHHHH
Q 015875 341 RLCPNSTGADIRSVCTEAGMFAIR-ARRKTVTEKDFLDAV 379 (399)
Q Consensus 341 ~~~~g~sg~di~~l~~~A~~~A~~-~~~~~It~ed~~~ai 379 (399)
..+.| +.+.+.+.++.+..++.. .....||.+++.+.+
T Consensus 216 ~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 216 RKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 77755 566777777766655532 234578888887654
No 120
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.68 E-value=1.1e-15 Score=164.18 Aligned_cols=222 Identities=15% Similarity=0.235 Sum_probs=147.7
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh--------
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-------- 213 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~-------- 213 (399)
+..|++++++++.+++...... +-.....++|+||||+|||++++.+|+.++.+|++++++....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 4899999999999887642211 1123446999999999999999999999999999998765422
Q ss_pred -hhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHh------cCC----CCCCCeE
Q 015875 214 -KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL------DGF----DARGNIK 282 (399)
Q Consensus 214 -~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l------~~~----~~~~~v~ 282 (399)
.|.|...+.+...+..+....| |+||||||.+.... ....+..|+++++.- +.+ -..++++
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~-------~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDM-------RGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhccccc-------CCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 3556665666666665554556 89999999996532 112357788877631 111 1236889
Q ss_pred EEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhc-----cCCC---Cccc---HHHHHHHC-CCCcHHH
Q 015875 283 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT-----MNCE---RDIR---FELLARLC-PNSTGAD 350 (399)
Q Consensus 283 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~-----~~~~---~~~~---~~~la~~~-~g~sg~d 350 (399)
+|+|+|.. .++++|++ || ..|.|+.++.++..+|.+.++.. .+.. -.++ ...++..+ ..+-.|.
T Consensus 468 ~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 468 FVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred EEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 99999887 59999999 99 68999999999999999988831 1111 1122 33344322 2222244
Q ss_pred HH----HHHHHHHHHHHHHc---CCCccHHHHHHHHHHH
Q 015875 351 IR----SVCTEAGMFAIRAR---RKTVTEKDFLDAVNKV 382 (399)
Q Consensus 351 i~----~l~~~A~~~A~~~~---~~~It~ed~~~ai~~v 382 (399)
++ .+|+.+.......+ .-.|+.+++.+.+..-
T Consensus 544 LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCC
Confidence 44 45544444333222 2368888888776543
No 121
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=2.1e-15 Score=156.56 Aligned_cols=205 Identities=19% Similarity=0.270 Sum_probs=146.8
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc----------
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------- 202 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~---------- 202 (399)
.++.|.+|++|+|++.+++.|+..+.. | ..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 457889999999999999999999975 1 345679999999999999999999987642
Q ss_pred --------------eEEEeccchhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHHH
Q 015875 203 --------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRT 264 (399)
Q Consensus 203 --------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~ 264 (399)
++.+++.. ..+-..++++.+.+. .....|++|||+|.+ +...++.
T Consensus 76 C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----------s~~a~na 138 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----------SNSAFNA 138 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----------CHHHHHH
Confidence 12222110 012234455444332 245569999999999 5556666
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHC
Q 015875 265 MLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLC 343 (399)
Q Consensus 265 l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~ 343 (399)
|+..+++ +...+++|++|+.+..+.+++++ |+ ..++|.+++.++....++..+...++. ....+..|+..+
T Consensus 139 LLK~LEe-----pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s 210 (563)
T PRK06647 139 LLKTIEE-----PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKS 210 (563)
T ss_pred HHHhhcc-----CCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6666553 45678888888888889999998 88 578999999999999998887766543 233456677777
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 344 PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 344 ~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
.| +.+++.+++..+..++ ...||.+++.+++
T Consensus 211 ~G-dlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 211 TG-SVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred CC-CHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 65 6677777776655442 2457877776643
No 122
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=3.3e-15 Score=155.79 Aligned_cols=214 Identities=17% Similarity=0.187 Sum_probs=153.4
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEe---
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI--- 207 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~--- 207 (399)
...++.+.+|++|+|++.+++.|..++.. -+.+.++||+||+|+|||++|+++|+.+.+.....+
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~ 81 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGP 81 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCC
Confidence 45668889999999999999999999875 145678999999999999999999998865422111
Q ss_pred ----------ccchhhhh----------hchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHH
Q 015875 208 ----------GSELVQKY----------VGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 263 (399)
Q Consensus 208 ----------~s~l~~~~----------~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~ 263 (399)
|..+.... ...+-..++++.+.+.. ....|++|||+|.+ +...++
T Consensus 82 ~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-----------s~~a~n 150 (598)
T PRK09111 82 TIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-----------STAAFN 150 (598)
T ss_pred ccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC-----------CHHHHH
Confidence 10011000 01123456666665543 34569999999999 556677
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHH
Q 015875 264 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 342 (399)
Q Consensus 264 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~ 342 (399)
.|+..|++ ....+++|++|+.++.+.+.+++ |+ ..++|..|+.++....++..+++.+.. ....++.|+..
T Consensus 151 aLLKtLEe-----Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~ 222 (598)
T PRK09111 151 ALLKTLEE-----PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARA 222 (598)
T ss_pred HHHHHHHh-----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77777765 34567788888888888888988 88 789999999999999998888766543 22345666777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 015875 343 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 343 ~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~ 380 (399)
+.| +.+++.+++..+..+ +...||.+++...+.
T Consensus 223 a~G-dlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 223 AEG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred cCC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 765 666777777665443 234699988887654
No 123
>PRK05642 DNA replication initiation factor; Validated
Probab=99.67 E-value=1.1e-14 Score=135.88 Aligned_cols=180 Identities=16% Similarity=0.212 Sum_probs=123.9
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCcc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARF 251 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~ 251 (399)
...++||||+|+|||||++++++++ +..+++++..++.... ..+.+..... .+|+|||++.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~--- 111 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAG--- 111 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcC---
Confidence 3679999999999999999999754 5677888887765431 1223333322 4999999998844
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---CCCccccCCCCce--eEEEecCCCHHHHHHHHHHHHh
Q 015875 252 DDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTR 326 (399)
Q Consensus 252 ~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~---~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~ 326 (399)
....+..++.+++.+. ..+..++|+++..|. ...+.+++ ||. ..+.+..|+.+++..+++....
T Consensus 112 ------~~~~~~~Lf~l~n~~~---~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 112 ------KADWEEALFHLFNRLR---DSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred ------ChHHHHHHHHHHHHHH---hcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 3556778888888754 233444555544443 34688988 874 5778899999999999997665
Q ss_pred ccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 015875 327 TMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 327 ~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~ 380 (399)
..++. ++...+.|+....+ +.+.+..+++.....+.. ....||..-+.+++.
T Consensus 181 ~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L~ 233 (234)
T PRK05642 181 RRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQ-AQRKLTIPFLKETLG 233 (234)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHhc
Confidence 54432 23335667777755 677888877777655544 335589888777653
No 124
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.67 E-value=1.1e-15 Score=163.20 Aligned_cols=163 Identities=21% Similarity=0.322 Sum_probs=122.7
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhCC----CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh-----
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLGI----DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ----- 213 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~----~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~----- 213 (399)
|+|++++++.|.+.+.... .|+ +|..++||+||||||||.+|+++|..++.+|++++|+++..
T Consensus 460 ViGQ~~ai~~l~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~ 531 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVS 531 (758)
T ss_pred EeCcHHHHHHHHHHHHHHh--------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHH
Confidence 8999999999999987521 122 23346999999999999999999999999999999988743
Q ss_pred hhhchhHHHH-----HHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC------CCCCeE
Q 015875 214 KYVGEGARMV-----RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARGNIK 282 (399)
Q Consensus 214 ~~~g~~~~~v-----~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~~~~v~ 282 (399)
..+|.....+ ..+....+....+||||||||.+ ++++++.|+++|+...-.+ .-.+++
T Consensus 532 ~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~i 600 (758)
T PRK11034 532 RLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_pred HHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCCcE
Confidence 3344322111 12334445566789999999999 7889999999998532111 124688
Q ss_pred EEEecCCC-------------------------CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHh
Q 015875 283 VLMATNRP-------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 326 (399)
Q Consensus 283 vI~atn~~-------------------------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~ 326 (399)
+|+|||.- ..+.|.++. |+|.+|.|++.+.++..+|+...+.
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 99999932 125577777 9999999999999999998887664
No 125
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.67 E-value=5.2e-15 Score=150.29 Aligned_cols=217 Identities=17% Similarity=0.282 Sum_probs=149.3
Q ss_pred CCcccc-ccCcHH--HHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-----CCceEEEec
Q 015875 137 DVTYND-VGGCKE--QIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIG 208 (399)
Q Consensus 137 ~~~~~~-i~G~~~--~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-----~~~~i~v~~ 208 (399)
+.+|++ ++|.+. +...++.++..| | ....+++|||++|+|||+|++++++++ +..++++++
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~----------~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNP----------G-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCc----------C-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 478888 445543 233344433221 1 123579999999999999999999954 467888999
Q ss_pred cchhhhhhchhHH---HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 015875 209 SELVQKYVGEGAR---MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 285 (399)
Q Consensus 209 s~l~~~~~g~~~~---~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ 285 (399)
.++...+...... .+....... ....+|+|||++.+.+ ....+..+..+++.+.. .+. .+|+
T Consensus 180 ~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~---------k~~~~e~lf~l~N~~~~---~~k-~iIl 244 (450)
T PRK14087 180 DEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSY---------KEKTNEIFFTIFNNFIE---NDK-QLFF 244 (450)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccC---------CHHHHHHHHHHHHHHHH---cCC-cEEE
Confidence 8887766544322 222222222 3456999999999844 45678888888888653 222 3666
Q ss_pred ecCCC----CCCCccccCCCCcee--EEEecCCCHHHHHHHHHHHHhccCCC---CcccHHHHHHHCCCCcHHHHHHHHH
Q 015875 286 ATNRP----DTLDPALLRPGRLDR--KVEFGLPDLESRTQIFKIHTRTMNCE---RDIRFELLARLCPNSTGADIRSVCT 356 (399)
Q Consensus 286 atn~~----~~ld~al~r~gRf~~--~i~~~~P~~~er~~Il~~~~~~~~~~---~~~~~~~la~~~~g~sg~di~~l~~ 356 (399)
|++.+ ..+++.+.+ ||.. .+.+.+|+.++|..|++..++..++. ++..++.|+..+.| +++.+..+|+
T Consensus 245 tsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~ 321 (450)
T PRK14087 245 SSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVS 321 (450)
T ss_pred ECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHH
Confidence 66653 346788888 8854 88899999999999999999875531 22235667777765 7789999999
Q ss_pred HHHHHHHHHc-CCCccHHHHHHHHHHH
Q 015875 357 EAGMFAIRAR-RKTVTEKDFLDAVNKV 382 (399)
Q Consensus 357 ~A~~~A~~~~-~~~It~ed~~~ai~~v 382 (399)
.+...+.... ...||.+.+.++++..
T Consensus 322 ~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 322 RLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 8887776553 2568888888888765
No 126
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=8.2e-15 Score=144.67 Aligned_cols=217 Identities=20% Similarity=0.334 Sum_probs=155.7
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc-----eEEEeccchhhhh
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-----FIRVIGSELVQKY 215 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~-----~i~v~~s~l~~~~ 215 (399)
+.+.+.+++++++..++...+.. ..|.++++|||||||||.+++.+++++... ++++||....+.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 44999999999999998754443 345569999999999999999999987433 8999997654332
Q ss_pred ---------------hchh-HHHHHHHHHHHHc-CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 015875 216 ---------------VGEG-ARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 278 (399)
Q Consensus 216 ---------------~g~~-~~~v~~~f~~a~~-~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 278 (399)
.|.. ......+++.... ...-||++||+|.|.... . ..|..|+...... .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~--------~---~~LY~L~r~~~~~--~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD--------G---EVLYSLLRAPGEN--K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc--------c---hHHHHHHhhcccc--c
Confidence 1111 2223334443333 456699999999996642 1 6777777665543 5
Q ss_pred CCeEEEEecCCC---CCCCccccCCCCce-eEEEecCCCHHHHHHHHHHHHhccCCC---CcccHHHHHH---HCCCCcH
Q 015875 279 GNIKVLMATNRP---DTLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRTMNCE---RDIRFELLAR---LCPNSTG 348 (399)
Q Consensus 279 ~~v~vI~atn~~---~~ld~al~r~gRf~-~~i~~~~P~~~er~~Il~~~~~~~~~~---~~~~~~~la~---~~~g~sg 348 (399)
.++.+|+.+|.. +.+++.+.+ ++. ..|.||+++.+|...|++...+..-.. .+--++.+|. ..+| ..
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DA 231 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DA 231 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cH
Confidence 678899999875 578888888 443 368999999999999999888643211 1122344443 3333 45
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 015875 349 ADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 349 ~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v 382 (399)
+-...+|+.|+..|.++++..++.+++.+|...+
T Consensus 232 R~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 232 RKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 6666899999999999999999999999995554
No 127
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.66 E-value=7.7e-15 Score=154.36 Aligned_cols=220 Identities=23% Similarity=0.336 Sum_probs=144.4
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CCce
Q 015875 134 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACF 203 (399)
Q Consensus 134 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~~~ 203 (399)
...+.+|++++|++..++.+...+.. ..+.+++|+||||||||++|+++++.. +.+|
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 35678899999999999988776643 235579999999999999999998754 4579
Q ss_pred EEEeccchhh-------hhhchhHHH----HHHHHHH----------HHcCCCEEEEEecCCcccCCccCCCCCCChHHH
Q 015875 204 IRVIGSELVQ-------KYVGEGARM----VRELFQM----------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 262 (399)
Q Consensus 204 i~v~~s~l~~-------~~~g~~~~~----v~~~f~~----------a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~ 262 (399)
+.++|..+.. ...|..... .+..+.. ......++|||||++.| +...|
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q 282 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQ 282 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHH
Confidence 9999876521 111111000 0011110 11223469999999999 78899
Q ss_pred HHHHHHHHHhcC------C-----------------CCCCCeEEEEec-CCCCCCCccccCCCCceeEEEecCCCHHHHH
Q 015875 263 RTMLEIVNQLDG------F-----------------DARGNIKVLMAT-NRPDTLDPALLRPGRLDRKVEFGLPDLESRT 318 (399)
Q Consensus 263 ~~l~~ll~~l~~------~-----------------~~~~~v~vI~at-n~~~~ld~al~r~gRf~~~i~~~~P~~~er~ 318 (399)
..++.+++.-.- + ....++++|++| +.++.+++++++ ||. .+.|++++.++..
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 999999876210 0 112345666655 567889999988 984 6789999999999
Q ss_pred HHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH--------cCCCccHHHHHHHHHHH
Q 015875 319 QIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA--------RRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 319 ~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~--------~~~~It~ed~~~ai~~v 382 (399)
.|++..+...+.. .+...+.|+..+ +.++...+++..+...+..+ ....|+.+|+.+++..-
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 9999988865432 122234444433 24444444444444333211 12369999999988754
No 128
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.66 E-value=8.2e-16 Score=150.33 Aligned_cols=204 Identities=18% Similarity=0.208 Sum_probs=136.9
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhh---
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV--- 216 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~--- 216 (399)
|+|.+..++++.+.+... ......|||+|++||||+++|++|+... +.+|+.++|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 568888888888888752 2346689999999999999999999855 57999999986532211
Q ss_pred --chhH----H---HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CC----CCCCCe
Q 015875 217 --GEGA----R---MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GF----DARGNI 281 (399)
Q Consensus 217 --g~~~----~---~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~----~~~~~v 281 (399)
|... . .....|.. ...++||||||+.| +.+.|..|+++++.-. .. ....++
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~---a~gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFER---ADGGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred HhccccccccCcccccCCchhh---CCCCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 1100 0 00112333 24569999999999 8899999999997632 11 113468
Q ss_pred EEEEecCCC--C-----CCCccccCCCCceeEEEecCCCHHHHHH----HHHHHHh----ccCCC--CcccHHHHHHHCC
Q 015875 282 KVLMATNRP--D-----TLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTR----TMNCE--RDIRFELLARLCP 344 (399)
Q Consensus 282 ~vI~atn~~--~-----~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~----~~~~~--~~~~~~~la~~~~ 344 (399)
.+|++|+.. . .+.+.|+. |+ ..+.+..|++++|.+ +++.++. +.+.. ..++.+.+..+..
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~ 212 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RL-AFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLE 212 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--Hh-cchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHh
Confidence 999999863 2 22333333 44 256788899988877 3334333 33332 3577888888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHcCCCccHHH
Q 015875 345 NSTGADIRSVCTEAGMFAIRARRKTVTEKD 374 (399)
Q Consensus 345 g~sg~di~~l~~~A~~~A~~~~~~~It~ed 374 (399)
..|++++++|.+.+...+.......++.+|
T Consensus 213 y~WPGNvrEL~n~i~~~~~~~~~~~~~~~~ 242 (329)
T TIGR02974 213 YHWPGNVRELKNVVERSVYRHGLEEAPIDE 242 (329)
T ss_pred CCCCchHHHHHHHHHHHHHhCCCCccchhh
Confidence 778888888777766666555555566665
No 129
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.65 E-value=5e-16 Score=161.79 Aligned_cols=213 Identities=20% Similarity=0.256 Sum_probs=144.6
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchh
Q 015875 136 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 212 (399)
Q Consensus 136 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~ 212 (399)
+..++++++|.+..++++.+.+... ......|||+|++||||+++|++|++.. +.+|+.++|..+.
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3467889999999999999988762 2346689999999999999999999864 5799999998764
Q ss_pred hhhhchhHHHHHHHHHH---------------HHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcC--C
Q 015875 213 QKYVGEGARMVRELFQM---------------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--F 275 (399)
Q Consensus 213 ~~~~g~~~~~v~~~f~~---------------a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~ 275 (399)
.... -..+|.. ......++|||||||.+ +...|..|+++++.-.- .
T Consensus 260 ~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~ 322 (534)
T TIGR01817 260 ETLL------ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGEFERV 322 (534)
T ss_pred HHHH------HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhC-----------CHHHHHHHHHHHhcCcEEEC
Confidence 3211 0111111 11234569999999999 78999999999976321 1
Q ss_pred C----CCCCeEEEEecCCC--CCCCccccCCCCcee--EEEecCCCHHHHHH----HHHHHHhc----cCCCCcccHHHH
Q 015875 276 D----ARGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ----IFKIHTRT----MNCERDIRFELL 339 (399)
Q Consensus 276 ~----~~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~----Il~~~~~~----~~~~~~~~~~~l 339 (399)
. ...++.+|++|+.. +.+....+++..|++ .+.+..|++++|.+ +++.++.. .+....++.+.+
T Consensus 323 ~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~ 402 (534)
T TIGR01817 323 GGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAI 402 (534)
T ss_pred CCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 1 12358899998764 222222232222222 55677777777755 44444443 332345677778
Q ss_pred HHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHH
Q 015875 340 ARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFL 376 (399)
Q Consensus 340 a~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~ 376 (399)
..+....|+++++++-+.+...+.......|+.+|+.
T Consensus 403 ~~L~~~~WPGNvrEL~~v~~~a~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 403 RVLMSCKWPGNVRELENCLERTATLSRSGTITRSDFS 439 (534)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhCCCCcccHHHCc
Confidence 7777777777777776666666666677789999985
No 130
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=7.9e-15 Score=153.24 Aligned_cols=215 Identities=14% Similarity=0.216 Sum_probs=144.9
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEE-------
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR------- 205 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~------- 205 (399)
..+++.+|++|+|++.+++.|+.++.. -+-+.++||+||+|||||++|+.+|+.+.+.-..
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 457889999999999999999998864 1345679999999999999999999988763100
Q ss_pred ---Eec------cchhh-------hhhc---hhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHH
Q 015875 206 ---VIG------SELVQ-------KYVG---EGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 262 (399)
Q Consensus 206 ---v~~------s~l~~-------~~~g---~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~ 262 (399)
-.| ..+.. .+.| .+...++.+.+.+. .....|++|||+|.+ +...+
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-----------t~~a~ 144 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML-----------STAAF 144 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-----------CHHHH
Confidence 001 00000 0011 11334555554442 234569999999999 45566
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHH
Q 015875 263 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 341 (399)
Q Consensus 263 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~ 341 (399)
+.|+..|++ ....+++|++|+.+..+.+.+++ |+ ..++|..++.++....+...++..+.. ....++.|+.
T Consensus 145 naLLK~LEe-----Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~ 216 (620)
T PRK14954 145 NAFLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIAR 216 (620)
T ss_pred HHHHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777777664 33456677777777888889988 77 799999999999888888777665542 3334667777
Q ss_pred HCCCCcHHHHHHHHHHHHHHHHH-HcCCCccHHHHHHHH
Q 015875 342 LCPNSTGADIRSVCTEAGMFAIR-ARRKTVTEKDFLDAV 379 (399)
Q Consensus 342 ~~~g~sg~di~~l~~~A~~~A~~-~~~~~It~ed~~~ai 379 (399)
.+.| +.+++.+.+.....++.. .....||.+++.+.+
T Consensus 217 ~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 217 KAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 7765 445555555554444311 224568887776654
No 131
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.65 E-value=5.7e-15 Score=147.85 Aligned_cols=220 Identities=23% Similarity=0.240 Sum_probs=139.3
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHh---hCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh-hhhch
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVK---LGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGE 218 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~---~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~-~~~g~ 218 (399)
|+|++++++.+..++..+.+....... -...+..++||+||||||||++|+++|+.++.+|+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 899999999998777432222100000 01124568999999999999999999999999999999988754 56666
Q ss_pred hH-HHHHHHHHH----HHcCCCEEEEEecCCcccCCccCCC---CCCChHHHHHHHHHHHHhc------C--CCCCCCeE
Q 015875 219 GA-RMVRELFQM----ARSKKACIVFFDEVDAIGGARFDDG---VGGDNEVQRTMLEIVNQLD------G--FDARGNIK 282 (399)
Q Consensus 219 ~~-~~v~~~f~~----a~~~~p~il~iDEiD~l~~~r~~~~---~~~~~~~~~~l~~ll~~l~------~--~~~~~~v~ 282 (399)
.. ..+..++.. .....++||||||||.+..++...+ ..+...+|+.|+++|+.-. + .....+.+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 43 334444432 2235678999999999976632211 1123468999999996311 0 11122455
Q ss_pred EEEecCCCC----------------------------------------------------CCCccccCCCCceeEEEec
Q 015875 283 VLMATNRPD----------------------------------------------------TLDPALLRPGRLDRKVEFG 310 (399)
Q Consensus 283 vI~atn~~~----------------------------------------------------~ld~al~r~gRf~~~i~~~ 310 (399)
+|+|+|... .+.|+++ ||++.++.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecC
Confidence 566655300 0234444 4999999999
Q ss_pred CCCHHHHHHHHHH----HHhc-------cCCCCcc---cHHHHHHH--CCCCcHHHHHHHHHHHHHHHHH
Q 015875 311 LPDLESRTQIFKI----HTRT-------MNCERDI---RFELLARL--CPNSTGADIRSVCTEAGMFAIR 364 (399)
Q Consensus 311 ~P~~~er~~Il~~----~~~~-------~~~~~~~---~~~~la~~--~~g~sg~di~~l~~~A~~~A~~ 364 (399)
+.+.++..+|+.. .+++ .++.-.+ ..+.|++. ..++-.|.|+.+++....-...
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 9999999999873 3321 2222112 24566664 3344557788777776654443
No 132
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.65 E-value=1e-14 Score=138.65 Aligned_cols=130 Identities=23% Similarity=0.257 Sum_probs=105.1
Q ss_pred CEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC------------CCCCCccccCCCC
Q 015875 235 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR------------PDTLDPALLRPGR 302 (399)
Q Consensus 235 p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~------------~~~ld~al~r~gR 302 (399)
|+||||||+|.| +-+....|.+.++. .-.-++|+|||+ |..++..|+. |
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEs------e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALES------ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhc------ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 789999999998 77777777776653 223358888886 5677778887 7
Q ss_pred ceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 015875 303 LDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNK 381 (399)
Q Consensus 303 f~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~ 381 (399)
+ ..|...+++.++.++|+++..+..++. .+..++.|+.....-|-+...+|+.-|...|.++++..|..+|+++|..-
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 7 688888899999999999999877664 34457788887777788999999999999999999999999999999776
Q ss_pred HHh
Q 015875 382 VIK 384 (399)
Q Consensus 382 v~~ 384 (399)
+..
T Consensus 432 F~D 434 (450)
T COG1224 432 FLD 434 (450)
T ss_pred Hhh
Confidence 543
No 133
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.64 E-value=2e-15 Score=160.43 Aligned_cols=217 Identities=17% Similarity=0.223 Sum_probs=147.9
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchh
Q 015875 136 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 212 (399)
Q Consensus 136 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~ 212 (399)
+..+|++++|.+..++++.+.+... ...+..|||+|++||||+++|++|++.. +.+|+.++|..+.
T Consensus 320 ~~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~ 388 (638)
T PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYP 388 (638)
T ss_pred ccccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCC
Confidence 3557999999999999988888652 2345679999999999999999999865 4799999998764
Q ss_pred hhhhchhHHHHHHHHHH------------HHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CCCC-
Q 015875 213 QKYVGEGARMVRELFQM------------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFDA- 277 (399)
Q Consensus 213 ~~~~g~~~~~v~~~f~~------------a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~~- 277 (399)
... .-.++|.. ......++||||||+.+ +...|..|+++++.-. ....
T Consensus 389 ~~~------~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~ 451 (638)
T PRK11388 389 DEA------LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSR 451 (638)
T ss_pred hHH------HHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCC
Confidence 211 11122221 11234569999999999 8899999999997522 1111
Q ss_pred ---CCCeEEEEecCCC--CCCCccccCCCCcee--EEEecCCCHHHHHH----HHHHHHhc----cCCCCcccHHHHHHH
Q 015875 278 ---RGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ----IFKIHTRT----MNCERDIRFELLARL 342 (399)
Q Consensus 278 ---~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~----Il~~~~~~----~~~~~~~~~~~la~~ 342 (399)
..++.+|+||+.. ..+....+++..|++ .+.+..|++++|.+ +++.++.. .+....++.+.+..+
T Consensus 452 ~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 531 (638)
T PRK11388 452 RLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 (638)
T ss_pred ceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 1267899999864 223333343333333 77888899999965 34444433 222234677788888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 015875 343 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 343 ~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~ 380 (399)
...-||+++++|-+.....+.......|+.+|+...+.
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~~~~~~i~~~~lp~~~~ 569 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALSSDNGRIRLSDLPEHLF 569 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHhCCCCeecHHHCchhhh
Confidence 77777777777766666655555666789888876553
No 134
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.64 E-value=1.5e-15 Score=148.41 Aligned_cols=207 Identities=20% Similarity=0.207 Sum_probs=137.7
Q ss_pred cccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhh--
Q 015875 140 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK-- 214 (399)
Q Consensus 140 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~-- 214 (399)
+++++|.+..++++.+.+... ...+..|||+|++||||+++|++++... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 467999999999999988762 2446689999999999999999999765 479999999876321
Q ss_pred ---hhchhHH-------HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcC--C----CCC
Q 015875 215 ---YVGEGAR-------MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--F----DAR 278 (399)
Q Consensus 215 ---~~g~~~~-------~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~----~~~ 278 (399)
.+|.... .....+. ....++|||||||.+ +...|..|+.+++.-.. . ...
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~---~a~gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATA-----------PMLVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchh---ccCCCeEEeCChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 1111100 0011232 234569999999999 78999999999875321 1 112
Q ss_pred CCeEEEEecCCC-------CCCCccccCCCCceeEEEecCCCHHHHHH----HHHHHH----hccCCC--CcccHHHHHH
Q 015875 279 GNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHT----RTMNCE--RDIRFELLAR 341 (399)
Q Consensus 279 ~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~----~~~~~~--~~~~~~~la~ 341 (399)
.++.||++|+.. ..+.+.|+. || ..+.+..|++++|.+ ++..++ ++.+.. ..++.+.+..
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~ 216 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RL-AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARET 216 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hc-CCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 368899998763 233444444 55 256778888888876 444443 333322 4577788888
Q ss_pred HCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHH
Q 015875 342 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 374 (399)
Q Consensus 342 ~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed 374 (399)
+....|++++++|-+.+...+.......++.++
T Consensus 217 L~~y~WPGNvrEL~~vl~~a~~~~~~~~~~~~~ 249 (326)
T PRK11608 217 LLNYRWPGNIRELKNVVERSVYRHGTSEYPLDN 249 (326)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCCCCchhh
Confidence 887778877777766666655544443444433
No 135
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=1.1e-14 Score=152.69 Aligned_cols=206 Identities=15% Similarity=0.226 Sum_probs=142.0
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCce--------
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF-------- 203 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~-------- 203 (399)
.+++.+.+|++|+|++.+++.|+.++.. + ..+..+|||||+|+|||++|+++|+.+.+..
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 3568899999999999999999998874 1 2345689999999999999999999875422
Q ss_pred -----------------EEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHH
Q 015875 204 -----------------IRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 262 (399)
Q Consensus 204 -----------------i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~ 262 (399)
+.++.+. ......++++.+.+.. ....|+||||+|.| +.+.+
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-----------~~~a~ 137 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHML-----------STAAF 137 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC-----------CHHHH
Confidence 1111110 0112334444443322 34569999999998 45566
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHH
Q 015875 263 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 341 (399)
Q Consensus 263 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~ 341 (399)
+.|+..+++ ....+++|++++..+.+.+.+++ |+ ..++|+.++..+...++...+...++. ....+..|+.
T Consensus 138 naLLk~LEe-----pp~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~ 209 (585)
T PRK14950 138 NALLKTLEE-----PPPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIAR 209 (585)
T ss_pred HHHHHHHhc-----CCCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666654 23567777777777778888887 77 578999999999999888887765543 2233567777
Q ss_pred HCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 342 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 342 ~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
.+.| +.+++.+.+.....+ ....||.+++...+
T Consensus 210 ~s~G-dlr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 210 AATG-SMRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 7765 666666666554332 34568888876543
No 136
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.64 E-value=2.9e-15 Score=155.18 Aligned_cols=216 Identities=17% Similarity=0.244 Sum_probs=145.7
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccch
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 211 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l 211 (399)
....+|++++|.+..++++.+.+... ......|||+|++||||+++|++++... ..+|+.++|..+
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 46679999999999999888877642 2345579999999999999999998754 479999999876
Q ss_pred hhhh-----hchhH-------HHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHh--cCCC-
Q 015875 212 VQKY-----VGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL--DGFD- 276 (399)
Q Consensus 212 ~~~~-----~g~~~-------~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l--~~~~- 276 (399)
.... .|... .....+|+.+ ..++|||||||.+ +...|..|+++++.- ....
T Consensus 267 ~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 267 PDDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred CHHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCCC
Confidence 4321 11100 0001223332 3469999999999 889999999999862 1111
Q ss_pred ---CCCCeEEEEecCCC--CCCCccccCCCCcee--EEEecCCCHHHHHH----H----HHHHHhccCC-CCcccHHHHH
Q 015875 277 ---ARGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ----I----FKIHTRTMNC-ERDIRFELLA 340 (399)
Q Consensus 277 ---~~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~----I----l~~~~~~~~~-~~~~~~~~la 340 (399)
...++.||++|+.+ +.+....+++..|++ .+.+..|++++|.+ + ++.+..+.+. ...++.+.+.
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~ 412 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNT 412 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 12468899998764 223333333333333 58888899988875 2 3333333433 2357778888
Q ss_pred HHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHH
Q 015875 341 RLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDF 375 (399)
Q Consensus 341 ~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~ 375 (399)
.+....||+++++|-+.....+.......|+.+|+
T Consensus 413 ~L~~y~WPGNvreL~nvl~~a~~~~~~~~i~~~~~ 447 (520)
T PRK10820 413 VLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDI 447 (520)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHhCCCCcccHHHc
Confidence 88877788788877766666665556667888775
No 137
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.7e-14 Score=151.47 Aligned_cols=188 Identities=19% Similarity=0.256 Sum_probs=135.6
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCce--------
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF-------- 203 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~-------- 203 (399)
.+++++.+|++++|++.+++.|+.++... +-+.++||+||+|+|||++|+++|+.+.+..
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP 74 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC
Confidence 45678899999999999999999998751 2345799999999999999999999886521
Q ss_pred ------------------EEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHH
Q 015875 204 ------------------IRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 261 (399)
Q Consensus 204 ------------------i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~ 261 (399)
+.++. ..+.+...++++...+.. ....|++|||+|.| +.+.
T Consensus 75 Cg~C~~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------t~~a 137 (620)
T PRK14948 75 CGKCELCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------STAA 137 (620)
T ss_pred CcccHHHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------CHHH
Confidence 11111 112334566777766543 34469999999999 5667
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHH
Q 015875 262 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 340 (399)
Q Consensus 262 ~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la 340 (399)
++.|+..+++ ....+++|++|+.+..+-+.+++ |+ ..++|+.++.++....+...+.+.+.. ....+..++
T Consensus 138 ~naLLK~LEe-----Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La 209 (620)
T PRK14948 138 FNALLKTLEE-----PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVA 209 (620)
T ss_pred HHHHHHHHhc-----CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 7777777763 44567788888888888899988 88 788999999988888777766654432 223366777
Q ss_pred HHCCCCcHHHHHHHHHH
Q 015875 341 RLCPNSTGADIRSVCTE 357 (399)
Q Consensus 341 ~~~~g~sg~di~~l~~~ 357 (399)
..+.| +.+++.++++.
T Consensus 210 ~~s~G-~lr~A~~lLek 225 (620)
T PRK14948 210 QRSQG-GLRDAESLLDQ 225 (620)
T ss_pred HHcCC-CHHHHHHHHHH
Confidence 77766 33455555544
No 138
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.63 E-value=1.1e-14 Score=134.55 Aligned_cols=200 Identities=23% Similarity=0.378 Sum_probs=128.0
Q ss_pred CCCCccccc-cC--cHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-----CCceEEE
Q 015875 135 KPDVTYNDV-GG--CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRV 206 (399)
Q Consensus 135 ~~~~~~~~i-~G--~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-----~~~~i~v 206 (399)
.|..||++. .| ...+...++.+...+- .....++||||+|+|||+|+++++++. +..++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~~-----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENPG-----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHSTT-----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcCC-----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 467889995 45 4445555555554311 123359999999999999999999864 5678899
Q ss_pred eccchhhhhhchhHH-HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 015875 207 IGSELVQKYVGEGAR-MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 285 (399)
Q Consensus 207 ~~s~l~~~~~g~~~~-~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ 285 (399)
++.++...+...... .+..+.... ....+|+||++|.+.+ ...+|..+..+++.+.. .++.+||.
T Consensus 71 ~~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~---------~~~~q~~lf~l~n~~~~---~~k~li~t 136 (219)
T PF00308_consen 71 SAEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAG---------KQRTQEELFHLFNRLIE---SGKQLILT 136 (219)
T ss_dssp EHHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTT---------HHHHHHHHHHHHHHHHH---TTSEEEEE
T ss_pred cHHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcC---------chHHHHHHHHHHHHHHh---hCCeEEEE
Confidence 988887765443322 122222222 2445999999999954 35678999999988752 34444444
Q ss_pred ecCCCCC---CCccccCCCCcee--EEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHH
Q 015875 286 ATNRPDT---LDPALLRPGRLDR--KVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAG 359 (399)
Q Consensus 286 atn~~~~---ld~al~r~gRf~~--~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~ 359 (399)
+...|.. +++.+.+ ||.. .+++..|+.+.|..|++..+...++. ++.-.+.|+...++ +.+++..+++...
T Consensus 137 s~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 137 SDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp ESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred eCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 4444543 5677877 7765 88999999999999999999877765 22235667777655 6778888877766
Q ss_pred HHH
Q 015875 360 MFA 362 (399)
Q Consensus 360 ~~A 362 (399)
.++
T Consensus 214 ~~~ 216 (219)
T PF00308_consen 214 AYA 216 (219)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 139
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.63 E-value=5.4e-15 Score=159.04 Aligned_cols=200 Identities=21% Similarity=0.303 Sum_probs=139.8
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCC----CCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh---
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--- 214 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~----~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~--- 214 (399)
.|+|++++++.+.+.+.. .+.|+. |...+||+||||||||++|+++|+.++.++++++++++...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 488999999999888864 233442 22358999999999999999999999999999999987542
Q ss_pred --hhchhHH-----HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC------CCCCe
Q 015875 215 --YVGEGAR-----MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARGNI 281 (399)
Q Consensus 215 --~~g~~~~-----~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~~~~v 281 (399)
.+|.... ..+.+.+.++....+||+|||||.+ ++++++.|+++++...-.+ .-.++
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 2332211 1223444556677789999999998 7889999999998632111 12367
Q ss_pred EEEEecCCCC-------------------------CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhcc-------C
Q 015875 282 KVLMATNRPD-------------------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM-------N 329 (399)
Q Consensus 282 ~vI~atn~~~-------------------------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~-------~ 329 (399)
++|+|||... .+.|.++. |++.++.|.+.+.++..+|++..+... +
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~ 673 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKN 673 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8999998631 24566766 999999999999999999998877532 1
Q ss_pred CCCccc---HHHHHHH--CCCCcHHHHHHHHHHHHHHH
Q 015875 330 CERDIR---FELLARL--CPNSTGADIRSVCTEAGMFA 362 (399)
Q Consensus 330 ~~~~~~---~~~la~~--~~g~sg~di~~l~~~A~~~A 362 (399)
+.-.++ .+.|+.. ...+..+.|+.+++.-...+
T Consensus 674 ~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~ 711 (731)
T TIGR02639 674 IKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKP 711 (731)
T ss_pred CeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHH
Confidence 111122 3445543 23445577777666555443
No 140
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.63 E-value=9.7e-15 Score=143.99 Aligned_cols=241 Identities=24% Similarity=0.310 Sum_probs=158.0
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhh-CCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh-hhhc-hh
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKL-GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVG-EG 219 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~-g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~-~~~g-~~ 219 (399)
|+|++++++.+..++............+ .-.+|+++||+||||||||++|+++|..++.+|+.+++..+.. .|.| +.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 9999999999988776532222111111 1234689999999999999999999999999999999987764 5666 34
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q 015875 220 ARMVRELFQMA--------------------------------------------------------------------- 230 (399)
Q Consensus 220 ~~~v~~~f~~a--------------------------------------------------------------------- 230 (399)
+..++.+|..+
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 45555444443
Q ss_pred ----------------------------------------------------------------------HcCCCEEEEE
Q 015875 231 ----------------------------------------------------------------------RSKKACIVFF 240 (399)
Q Consensus 231 ----------------------------------------------------------------------~~~~p~il~i 240 (399)
+..+.+||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0123469999
Q ss_pred ecCCcccCCccCCC-CCCChHHHHHHHHHHHHh-----cCCCCCCCeEEEEecC----CCCCCCccccCCCCceeEEEec
Q 015875 241 DEVDAIGGARFDDG-VGGDNEVQRTMLEIVNQL-----DGFDARGNIKVLMATN----RPDTLDPALLRPGRLDRKVEFG 310 (399)
Q Consensus 241 DEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~l-----~~~~~~~~v~vI~atn----~~~~ld~al~r~gRf~~~i~~~ 310 (399)
||||+++.+..+.+ .-+...+|+.|+.+++-- .+.-...++.+|++.- .|..|=|.|. |||...+.+.
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~ 331 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQ 331 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECC
Confidence 99999987653222 223456899998887631 1112345788887663 4666667776 4999999999
Q ss_pred CCCHHHHHHHHH----HHHh-------ccCCC---CcccHHHHHHHC-------CCCcHHHHHHHHHHHHHHHHHHc---
Q 015875 311 LPDLESRTQIFK----IHTR-------TMNCE---RDIRFELLARLC-------PNSTGADIRSVCTEAGMFAIRAR--- 366 (399)
Q Consensus 311 ~P~~~er~~Il~----~~~~-------~~~~~---~~~~~~~la~~~-------~g~sg~di~~l~~~A~~~A~~~~--- 366 (399)
.++.++...||. ...+ ..++. .+..+..||... .+.-.+-|+.++.....-+.-..
T Consensus 332 ~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p~~ 411 (441)
T TIGR00390 332 ALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPDL 411 (441)
T ss_pred CCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCC
Confidence 999999999873 2222 22221 122345555443 34444677777777665443222
Q ss_pred ---CCCccHHHHHHHHHHHHhh
Q 015875 367 ---RKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 367 ---~~~It~ed~~~ai~~v~~~ 385 (399)
.-.||.+-+...+..+...
T Consensus 412 ~~~~v~I~~~~V~~~l~~~~~~ 433 (441)
T TIGR00390 412 SGQNITIDADYVSKKLGALVAD 433 (441)
T ss_pred CCCEEEECHHHHHhHHHHHHhc
Confidence 2358888888777777643
No 141
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.62 E-value=5.3e-15 Score=144.05 Aligned_cols=223 Identities=18% Similarity=0.252 Sum_probs=142.2
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-------CC--ceEE
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-------DA--CFIR 205 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-------~~--~~i~ 205 (399)
+.+..|.+|+|++++++.+.-.+.. ....++||+|+||||||++|+++++-+ ++ .+..
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 3567899999999999988765432 112479999999999999999999987 22 1221
Q ss_pred Eecc---------chhhh---------------hhch--hHHHHH---HHHHH--HHcCCCEEEEEecCCcccCCccCCC
Q 015875 206 VIGS---------ELVQK---------------YVGE--GARMVR---ELFQM--ARSKKACIVFFDEVDAIGGARFDDG 254 (399)
Q Consensus 206 v~~s---------~l~~~---------------~~g~--~~~~v~---~~f~~--a~~~~p~il~iDEiD~l~~~r~~~~ 254 (399)
+.+. ++... .+|. ....+. ..|+. ......++||+||++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl-------- 140 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL-------- 140 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC--------
Confidence 1110 00000 1110 000000 00110 01122359999999999
Q ss_pred CCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEecCCCC-CCCccccCCCCceeEEEecCCCH-HHHHHHHHHH
Q 015875 255 VGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLPDL-ESRTQIFKIH 324 (399)
Q Consensus 255 ~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~~~~P~~-~er~~Il~~~ 324 (399)
+...|..|++.+++-. +. ....++++|+++|..+ .++++++. ||...+.++.|.. ++|.+|++..
T Consensus 141 ---~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 141 ---EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ---CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 7889999999987532 11 1234688888888754 58889998 9999999998866 8999999875
Q ss_pred HhccC----C------CCccc--------------------HHH---HHHHCC-CCcHHHHHHHHHHHHHHHHHHcCCCc
Q 015875 325 TRTMN----C------ERDIR--------------------FEL---LARLCP-NSTGADIRSVCTEAGMFAIRARRKTV 370 (399)
Q Consensus 325 ~~~~~----~------~~~~~--------------------~~~---la~~~~-g~sg~di~~l~~~A~~~A~~~~~~~I 370 (399)
..... . ..... .+. ++..+. .-..+++. +++.|...|+.+++..|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V 294 (334)
T PRK13407 216 DAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAV 294 (334)
T ss_pred hcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCee
Confidence 32110 0 00000 111 222222 12335555 88999999999999999
Q ss_pred cHHHHHHHHHHHHh
Q 015875 371 TEKDFLDAVNKVIK 384 (399)
Q Consensus 371 t~ed~~~ai~~v~~ 384 (399)
+.+|+..+..-+..
T Consensus 295 ~~~Di~~~~~~vl~ 308 (334)
T PRK13407 295 GRSHLRSVATMALS 308 (334)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999988766653
No 142
>PRK06620 hypothetical protein; Validated
Probab=99.62 E-value=3.1e-14 Score=130.94 Aligned_cols=197 Identities=16% Similarity=0.266 Sum_probs=127.4
Q ss_pred ecCCCCcccc-ccCc--HHHHHHHHHHHhcCCCChhHHHhhCCCC-CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEec
Q 015875 133 EEKPDVTYND-VGGC--KEQIEKMREVVELPMLHPEKFVKLGIDP-PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 208 (399)
Q Consensus 133 ~~~~~~~~~~-i~G~--~~~~~~l~~~i~~~~~~~~~~~~~g~~~-~~~vLL~GppGtGKT~larala~~~~~~~i~v~~ 208 (399)
...+..+|++ ++|. ..+...++++...+ +..+ ...++||||||||||||++++++..+..++. .
T Consensus 8 ~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~----------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~ 75 (214)
T PRK06620 8 TTSSKYHPDEFIVSSSNDQAYNIIKNWQCGF----------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--D 75 (214)
T ss_pred CCCCCCCchhhEecccHHHHHHHHHHHHHcc----------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--h
Confidence 3456778888 4444 34555666654321 2222 2679999999999999999999987754322 1
Q ss_pred cchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 209 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 209 s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
... ....+ ....+|+|||||.+ . +..+..+++.+. ..+..++|+++.
T Consensus 76 ~~~-----------~~~~~-----~~~d~lliDdi~~~-----------~---~~~lf~l~N~~~---e~g~~ilits~~ 122 (214)
T PRK06620 76 IFF-----------NEEIL-----EKYNAFIIEDIENW-----------Q---EPALLHIFNIIN---EKQKYLLLTSSD 122 (214)
T ss_pred hhh-----------chhHH-----hcCCEEEEeccccc-----------h---HHHHHHHHHHHH---hcCCEEEEEcCC
Confidence 100 01111 12359999999965 1 235666666654 245566666665
Q ss_pred CCCC--CCccccCCCCcee--EEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHH
Q 015875 289 RPDT--LDPALLRPGRLDR--KVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAI 363 (399)
Q Consensus 289 ~~~~--ld~al~r~gRf~~--~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~ 363 (399)
.|.. + +++++ |+.. ++++..|+.+.+..+++.++...++. ++...+.|+..+.+ +.+.+..+++.....+.
T Consensus 123 ~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~ 198 (214)
T PRK06620 123 KSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFAL 198 (214)
T ss_pred Cccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 5543 5 78888 8753 79999999999999998887754442 23336777877755 56677777776554444
Q ss_pred HHcCCCccHHHHHHHH
Q 015875 364 RARRKTVTEKDFLDAV 379 (399)
Q Consensus 364 ~~~~~~It~ed~~~ai 379 (399)
.. ...||...+.+++
T Consensus 199 ~~-~~~it~~~~~~~l 213 (214)
T PRK06620 199 IS-KRKITISLVKEVL 213 (214)
T ss_pred Hc-CCCCCHHHHHHHh
Confidence 43 3569988887765
No 143
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.62 E-value=2.5e-14 Score=131.54 Aligned_cols=195 Identities=21% Similarity=0.246 Sum_probs=131.8
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 208 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~ 208 (399)
+....++.+++|+|.+.+++.|.+....++.. .|..++||||++|||||+++|++.++. +..++.|..
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k 88 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSK 88 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECH
Confidence 44567788999999999999999888765443 578899999999999999999999966 677888876
Q ss_pred cchhhhhhchhHHHHHHHHHHHH-cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 015875 209 SELVQKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 287 (399)
Q Consensus 209 s~l~~~~~g~~~~~v~~~f~~a~-~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 287 (399)
.++.. +..+++..+ ....-|||+||+. +. ........|..+|+--- -....||++.+|+
T Consensus 89 ~~L~~---------l~~l~~~l~~~~~kFIlf~DDLs--Fe--------~~d~~yk~LKs~LeGgl-e~~P~NvliyATS 148 (249)
T PF05673_consen 89 EDLGD---------LPELLDLLRDRPYKFILFCDDLS--FE--------EGDTEYKALKSVLEGGL-EARPDNVLIYATS 148 (249)
T ss_pred HHhcc---------HHHHHHHHhcCCCCEEEEecCCC--CC--------CCcHHHHHHHHHhcCcc-ccCCCcEEEEEec
Confidence 65532 344555544 2345699999854 11 12333455555544210 1345689999999
Q ss_pred CCCCCCCcc---------------------ccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcc-cH----HHHHH
Q 015875 288 NRPDTLDPA---------------------LLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDI-RF----ELLAR 341 (399)
Q Consensus 288 n~~~~ld~a---------------------l~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~-~~----~~la~ 341 (399)
|+...++.. +--.+||..+|.|.+|+.++..+|++.++...++.-+. .+ ...+.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 974333221 11125999999999999999999999999877765321 11 11233
Q ss_pred HCCCCcHHHHHHHH
Q 015875 342 LCPNSTGADIRSVC 355 (399)
Q Consensus 342 ~~~g~sg~di~~l~ 355 (399)
...|.||+-.++.+
T Consensus 229 ~rg~RSGRtA~QF~ 242 (249)
T PF05673_consen 229 RRGGRSGRTARQFI 242 (249)
T ss_pred HcCCCCHHHHHHHH
Confidence 34455665555444
No 144
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.61 E-value=2.6e-15 Score=154.72 Aligned_cols=217 Identities=18% Similarity=0.229 Sum_probs=143.1
Q ss_pred CCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh
Q 015875 137 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 213 (399)
Q Consensus 137 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~ 213 (399)
..+|++++|.+..++++++.+... ...+.+|||+|++||||+++|++|++.. +.||+.++|..+..
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 467889999999999999998652 2346689999999999999999999754 67999999977643
Q ss_pred hh-----hc----hhHH----HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CCC--
Q 015875 214 KY-----VG----EGAR----MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD-- 276 (399)
Q Consensus 214 ~~-----~g----~~~~----~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~-- 276 (399)
.. .| .+.. ....+|+.+ ..++||||||+.| +...|..|+++|++-. ...
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCC
Confidence 21 11 1100 011233333 3459999999999 8999999999998632 111
Q ss_pred --CCCCeEEEEecCCC--CCCCccccCCCCcee--EEEecCCCHHHHHH----HHHHHHhccCC--CCcccHHHHHH---
Q 015875 277 --ARGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ----IFKIHTRTMNC--ERDIRFELLAR--- 341 (399)
Q Consensus 277 --~~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~----Il~~~~~~~~~--~~~~~~~~la~--- 341 (399)
...++.+|++|+.. ..+....++++.|++ .+.+..|++++|.+ ++..++.+... ...++.+.+..
T Consensus 343 ~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~ 422 (526)
T TIGR02329 343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAG 422 (526)
T ss_pred ceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHH
Confidence 12357899999874 334444444333433 57888899998876 44444443321 11244444444
Q ss_pred ----HCCCCcHHHHHHHHHHHHHHHHHH---cCCCccHHHHHHH
Q 015875 342 ----LCPNSTGADIRSVCTEAGMFAIRA---RRKTVTEKDFLDA 378 (399)
Q Consensus 342 ----~~~g~sg~di~~l~~~A~~~A~~~---~~~~It~ed~~~a 378 (399)
+...-||+++++|-+.+...++.. ....|+.+|+...
T Consensus 423 ~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 423 VADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 666667767777666666555543 2456888887543
No 145
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.61 E-value=1.5e-15 Score=149.40 Aligned_cols=208 Identities=22% Similarity=0.284 Sum_probs=136.6
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHh----cCCceEEEeccch
Q 015875 136 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR----TDACFIRVIGSEL 211 (399)
Q Consensus 136 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~----~~~~~i~v~~s~l 211 (399)
....+++++|.+...+++++-+.. -.+...+||++|++||||+++|+.++.. .+.||+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~-----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA-----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh-----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 345567899999999999998875 2245668999999999999999999863 3679999999776
Q ss_pred hhhhh---------chhHH---HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CC--
Q 015875 212 VQKYV---------GEGAR---MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GF-- 275 (399)
Q Consensus 212 ~~~~~---------g~~~~---~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~-- 275 (399)
..... |...+ .-..+|+.|. .++||+|||+.+ +.+.|..++++++... .+
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~---GGtLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQAN---GGTLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecC---CCEEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCC
Confidence 54321 11111 1123444443 459999999999 8999999999998732 11
Q ss_pred --CCCCCeEEEEecCCC--CCCCc--cccCCCCceeEEEecCCCHHHHHH--------HHHHHHhccCCCCccc-HHHHH
Q 015875 276 --DARGNIKVLMATNRP--DTLDP--ALLRPGRLDRKVEFGLPDLESRTQ--------IFKIHTRTMNCERDIR-FELLA 340 (399)
Q Consensus 276 --~~~~~v~vI~atn~~--~~ld~--al~r~gRf~~~i~~~~P~~~er~~--------Il~~~~~~~~~~~~~~-~~~la 340 (399)
....+|.+|+||+.. +.+-. .+.+ |. ..+.+..|++++|.. +++.++++.+.....+ .+.+.
T Consensus 208 ~~~~~~dVRli~AT~~~l~~~~~~g~dl~~--rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~ 284 (403)
T COG1221 208 SQPRPVDVRLICATTEDLEEAVLAGADLTR--RL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALR 284 (403)
T ss_pred CCCcCCCceeeeccccCHHHHHHhhcchhh--hh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 123479999999752 22323 4443 33 356777788888865 4445556666543333 35666
Q ss_pred HHCCCCcHHHHHHHHHHHHHHHHHHcCCCcc
Q 015875 341 RLCPNSTGADIRSVCTEAGMFAIRARRKTVT 371 (399)
Q Consensus 341 ~~~~g~sg~di~~l~~~A~~~A~~~~~~~It 371 (399)
.+....++++++.+-+.+...+.......++
T Consensus 285 ~L~~y~~pGNirELkN~Ve~~~~~~~~~~~~ 315 (403)
T COG1221 285 ALLAYDWPGNIRELKNLVERAVAQASGEGQD 315 (403)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHhccccCC
Confidence 6665555655555555555544444444444
No 146
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.61 E-value=1.1e-14 Score=142.24 Aligned_cols=225 Identities=19% Similarity=0.215 Sum_probs=149.0
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC-------CceEEE-
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-------ACFIRV- 206 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~-------~~~i~v- 206 (399)
.+...|.+|+|+++++..|...+..| ...++||.||+|||||++||++++.+. ++|...
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCC
Confidence 56678999999999999988877652 335899999999999999999988652 233200
Q ss_pred -----eccchhhhh-------------------hchhHHH------HHHHHHHH---------HcCCCEEEEEecCCccc
Q 015875 207 -----IGSELVQKY-------------------VGEGARM------VRELFQMA---------RSKKACIVFFDEVDAIG 247 (399)
Q Consensus 207 -----~~s~l~~~~-------------------~g~~~~~------v~~~f~~a---------~~~~p~il~iDEiD~l~ 247 (399)
.++++.... .|.++.. +...|... .....++||+||++.+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL- 156 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL- 156 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-
Confidence 011111100 1111111 01111111 1223469999999999
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHh------cCC--CCCCCeEEEEecCCCC-CCCccccCCCCceeEEEecCCC-HHHH
Q 015875 248 GARFDDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLPD-LESR 317 (399)
Q Consensus 248 ~~r~~~~~~~~~~~~~~l~~ll~~l------~~~--~~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~~~~P~-~~er 317 (399)
+...|..|++.+++- ++. ....++++|++.|..+ .+.++++. ||...+.+..|+ .+.+
T Consensus 157 ----------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 157 ----------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELR 224 (350)
T ss_pred ----------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHH
Confidence 789999999988752 121 1234677788777654 58899998 999999999997 5899
Q ss_pred HHHHHHHHhccC--C-----------------------CCcc-----cHH---HHHHHCCCCcHHHHHHHHHHHHHHHHH
Q 015875 318 TQIFKIHTRTMN--C-----------------------ERDI-----RFE---LLARLCPNSTGADIRSVCTEAGMFAIR 364 (399)
Q Consensus 318 ~~Il~~~~~~~~--~-----------------------~~~~-----~~~---~la~~~~g~sg~di~~l~~~A~~~A~~ 364 (399)
.+|++....... . .+.+ ..+ .++..+.-.++|--..+++.|...|..
T Consensus 225 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal 304 (350)
T CHL00081 225 VKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAF 304 (350)
T ss_pred HHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHH
Confidence 999887532110 0 0000 011 222333334566666788899999999
Q ss_pred HcCCCccHHHHHHHHHHHHhh
Q 015875 365 ARRKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 365 ~~~~~It~ed~~~ai~~v~~~ 385 (399)
+++..|+.+|+..+..-+..-
T Consensus 305 ~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 305 EGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999888643
No 147
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=3.5e-14 Score=148.99 Aligned_cols=206 Identities=17% Similarity=0.237 Sum_probs=145.1
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc---------
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 202 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~--------- 202 (399)
.+.+.+.+|++|+|++.+++.|...+.. -..+..+|||||+|+|||++|+.+|+.+.|.
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~C 75 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEAC 75 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 4567889999999999999999999875 1345679999999999999999999987542
Q ss_pred ----------------eEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHH
Q 015875 203 ----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 262 (399)
Q Consensus 203 ----------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~ 262 (399)
++.+++.+ ......++.+...+.. ....|++|||+|.+ +.+.+
T Consensus 76 g~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----------s~~a~ 138 (614)
T PRK14971 76 NECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----------SQAAF 138 (614)
T ss_pred CcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----------CHHHH
Confidence 22222211 0113445566555432 23459999999999 56677
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCC-cccHHHHHH
Q 015875 263 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER-DIRFELLAR 341 (399)
Q Consensus 263 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~-~~~~~~la~ 341 (399)
+.|+..|++ ....+++|++|+.+..+-+.+++ |+ ..++|..++.++....++..+...++.- ...++.|+.
T Consensus 139 naLLK~LEe-----pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~ 210 (614)
T PRK14971 139 NAFLKTLEE-----PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQ 210 (614)
T ss_pred HHHHHHHhC-----CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 778777775 34566777777777889999998 87 7799999999999998888877766542 233677777
Q ss_pred HCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 342 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 342 ~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
.+.| +.+++.+++..+..++ +.. ||.+++.+.+
T Consensus 211 ~s~g-dlr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 211 KADG-GMRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HcCC-CHHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 7755 4555555554444443 222 6666655443
No 148
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.60 E-value=2.7e-15 Score=154.49 Aligned_cols=212 Identities=19% Similarity=0.275 Sum_probs=135.2
Q ss_pred CccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHh-----------cCCceEEE
Q 015875 138 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR-----------TDACFIRV 206 (399)
Q Consensus 138 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~-----------~~~~~i~v 206 (399)
.+|++|+|.+..++++++.+... ...+.+|||+|++||||+++|++|++. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 56889999999999999998752 234668999999999999999999987 36799999
Q ss_pred eccchhhhh-----hch----hHHH----HHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc
Q 015875 207 IGSELVQKY-----VGE----GARM----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 273 (399)
Q Consensus 207 ~~s~l~~~~-----~g~----~~~~----v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~ 273 (399)
+|..+.... .|. +... -..+|+.+ ..++||||||+.| +...|..|+++|++-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~L-----------p~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEM-----------PLPLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhC-----------CHHHHHHHHhhhhcCe
Confidence 998764321 111 0010 11234433 3459999999999 8899999999998632
Q ss_pred --CCC----CCCCeEEEEecCCC--CCCCccccCCCCcee--EEEecCCCHHHHHH----HHHHHHhc----cCCCCccc
Q 015875 274 --GFD----ARGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ----IFKIHTRT----MNCERDIR 335 (399)
Q Consensus 274 --~~~----~~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~----Il~~~~~~----~~~~~~~~ 335 (399)
... ...++.+|++||.. ..+....+|++.|++ .+.+..|++++|.+ +++.++++ .+.. +.
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~--~~ 428 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAP--FS 428 (538)
T ss_pred EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCC--CC
Confidence 111 12367899999874 223333333333333 67888899999876 44445443 2221 22
Q ss_pred HHH-------HHHHCCCCcHHHHHHHHHHHHHHHHHHc---CCCccHHHHH
Q 015875 336 FEL-------LARLCPNSTGADIRSVCTEAGMFAIRAR---RKTVTEKDFL 376 (399)
Q Consensus 336 ~~~-------la~~~~g~sg~di~~l~~~A~~~A~~~~---~~~It~ed~~ 376 (399)
.+. +..+...-||+++++|-+.....++... ...|+.+++.
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 222 2445555566565555554444443322 2456666553
No 149
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.60 E-value=1.2e-14 Score=143.48 Aligned_cols=241 Identities=22% Similarity=0.291 Sum_probs=158.1
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhCC-CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh-hhhc-hh
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLGI-DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVG-EG 219 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~-~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~-~~~g-~~ 219 (399)
|+|++++++.+..++....++..+...... ..|.++||+||||||||++|+++|..++.+|+.++++++.. .|.| +.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 999999999998888542211111111110 13689999999999999999999999999999999998875 5777 34
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 015875 220 ARMVRELFQMAR-------------------------------------------------------------------- 231 (399)
Q Consensus 220 ~~~v~~~f~~a~-------------------------------------------------------------------- 231 (399)
+..++.+|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 455555555440
Q ss_pred ----------------------------------------------------------------------cCCCEEEEEe
Q 015875 232 ----------------------------------------------------------------------SKKACIVFFD 241 (399)
Q Consensus 232 ----------------------------------------------------------------------~~~p~il~iD 241 (399)
...-+|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0134699999
Q ss_pred cCCcccCCccCCC-CCCChHHHHHHHHHHHHh-----cCCCCCCCeEEEEec----CCCCCCCccccCCCCceeEEEecC
Q 015875 242 EVDAIGGARFDDG-VGGDNEVQRTMLEIVNQL-----DGFDARGNIKVLMAT----NRPDTLDPALLRPGRLDRKVEFGL 311 (399)
Q Consensus 242 EiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~l-----~~~~~~~~v~vI~at----n~~~~ld~al~r~gRf~~~i~~~~ 311 (399)
|||+++....+.+ .-+...+|+.|+.+++-- .+.-.+.++.+||+. ..|+.|-|.|.- ||..++.+..
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~ 334 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELDA 334 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCC
Confidence 9999987643211 223456899998887631 111235678888765 346667788865 9999999999
Q ss_pred CCHHHHHHHHH----HHHhc-------cCCC---CcccHHHHHHHC-------CCCcHHHHHHHHHHHHHHHHHHc----
Q 015875 312 PDLESRTQIFK----IHTRT-------MNCE---RDIRFELLARLC-------PNSTGADIRSVCTEAGMFAIRAR---- 366 (399)
Q Consensus 312 P~~~er~~Il~----~~~~~-------~~~~---~~~~~~~la~~~-------~g~sg~di~~l~~~A~~~A~~~~---- 366 (399)
++.++..+||. ...++ .++. .+..++.+|... .+.-.|-|+.++.....-+.-..
T Consensus 335 L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p~~~ 414 (443)
T PRK05201 335 LTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAPDMS 414 (443)
T ss_pred CCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCCCCC
Confidence 99999999873 22222 2221 122345555543 23334677777777665443221
Q ss_pred --CCCccHHHHHHHHHHHHhh
Q 015875 367 --RKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 367 --~~~It~ed~~~ai~~v~~~ 385 (399)
.-.||.+-+...+..+...
T Consensus 415 ~~~v~I~~~~V~~~l~~l~~~ 435 (443)
T PRK05201 415 GETVTIDAAYVDEKLGDLVKD 435 (443)
T ss_pred CCEEEECHHHHHHHHHHHHhc
Confidence 1357888777777776543
No 150
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.60 E-value=3e-15 Score=162.77 Aligned_cols=198 Identities=23% Similarity=0.330 Sum_probs=135.5
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCC----CCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh-
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGI----DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ- 213 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~----~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~- 213 (399)
.|+|++++++.+..++... +.|+ +|...+||+||+|||||++|+++|+.+ ..++++++++++..
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~ 581 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEK 581 (821)
T ss_pred cCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccc
Confidence 4999999999999998652 2232 222358999999999999999999986 46899999988743
Q ss_pred ----hhhchhHHH-----HHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC------CC
Q 015875 214 ----KYVGEGARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------AR 278 (399)
Q Consensus 214 ----~~~g~~~~~-----v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~~ 278 (399)
+..|..++. ...+...++....+||+|||+|.+ ++.+++.|++++++..-.+ ..
T Consensus 582 ~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 582 HTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred ccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcEEec
Confidence 223332211 123555666677799999999998 8899999999998632111 23
Q ss_pred CCeEEEEecCCCCC-------------------------------------CCccccCCCCceeEEEecCCCHHHHHHHH
Q 015875 279 GNIKVLMATNRPDT-------------------------------------LDPALLRPGRLDRKVEFGLPDLESRTQIF 321 (399)
Q Consensus 279 ~~v~vI~atn~~~~-------------------------------------ld~al~r~gRf~~~i~~~~P~~~er~~Il 321 (399)
.++++|+|||.... +.|.++. |+|.++.|.+.+.++..+|+
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHH
Confidence 47889999985211 2245666 99999999999999999998
Q ss_pred HHHHhcc-------CCCCccc---HHHHHHHC--CCCcHHHHHHHHHHHHH
Q 015875 322 KIHTRTM-------NCERDIR---FELLARLC--PNSTGADIRSVCTEAGM 360 (399)
Q Consensus 322 ~~~~~~~-------~~~~~~~---~~~la~~~--~g~sg~di~~l~~~A~~ 360 (399)
...+... ++.-.++ .+.|+... ..+-.+.|+.+++.-..
T Consensus 729 ~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~ 779 (821)
T CHL00095 729 EIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLE 779 (821)
T ss_pred HHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Confidence 8776542 1211222 34455542 23334666666555443
No 151
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.60 E-value=8.6e-15 Score=148.47 Aligned_cols=210 Identities=20% Similarity=0.279 Sum_probs=155.4
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCce-------EE
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF-------IR 205 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~-------i~ 205 (399)
.+++|.+|++++|++.+...|+.++.. -+-..+.||+||.|||||++||.+|+.++|.- ..
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~ 75 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGK 75 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchh
Confidence 357889999999999999999999975 13456899999999999999999999886542 11
Q ss_pred E-eccchhhh----------hhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHH
Q 015875 206 V-IGSELVQK----------YVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 270 (399)
Q Consensus 206 v-~~s~l~~~----------~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 270 (399)
+ .|.++... -...+-..+|++.+.+.. ..+.|++|||+|.+ +....+.|+..|+
T Consensus 76 C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~afNALLKTLE 144 (515)
T COG2812 76 CISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQAFNALLKTLE 144 (515)
T ss_pred hhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHHHHHHHhcccc
Confidence 1 11111111 011233456666666543 44569999999999 5666667666666
Q ss_pred HhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCc-ccHHHHHHHCCCCcHH
Q 015875 271 QLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD-IRFELLARLCPNSTGA 349 (399)
Q Consensus 271 ~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~-~~~~~la~~~~g~sg~ 349 (399)
+ +..+|++|.+|..+..+++.+++ |+ ..+.|...+.++....|...+.+.++.-+ ..+..+++..+| +.|
T Consensus 145 E-----PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~R 215 (515)
T COG2812 145 E-----PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLR 215 (515)
T ss_pred c-----CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chh
Confidence 3 57789999999999999999999 88 78999999999999999999888776533 345667777766 788
Q ss_pred HHHHHHHHHHHHHHHHcCCCccHHHHHHH
Q 015875 350 DIRSVCTEAGMFAIRARRKTVTEKDFLDA 378 (399)
Q Consensus 350 di~~l~~~A~~~A~~~~~~~It~ed~~~a 378 (399)
|..+++..|..+.- ..||.+++...
T Consensus 216 DalslLDq~i~~~~----~~It~~~v~~~ 240 (515)
T COG2812 216 DALSLLDQAIAFGE----GEITLESVRDM 240 (515)
T ss_pred hHHHHHHHHHHccC----CcccHHHHHHH
Confidence 99999988877641 44555554433
No 152
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.60 E-value=7.1e-14 Score=138.06 Aligned_cols=225 Identities=21% Similarity=0.355 Sum_probs=156.1
Q ss_pred eecCCCCcccc-ccCcHHH--HHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-----CCce
Q 015875 132 VEEKPDVTYND-VGGCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACF 203 (399)
Q Consensus 132 ~~~~~~~~~~~-i~G~~~~--~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-----~~~~ 203 (399)
....+..+|++ ++|-... ......+.+.| | .+-..++||||+|+|||||++|++++. +..+
T Consensus 78 ~~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~----------g-~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v 146 (408)
T COG0593 78 SGLNPKYTFDNFVVGPSNRLAYAAAKAVAENP----------G-GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARV 146 (408)
T ss_pred ccCCCCCchhheeeCCchHHHHHHHHHHHhcc----------C-CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceE
Confidence 34567889998 4454433 22233333321 1 234579999999999999999999975 3467
Q ss_pred EEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 015875 204 IRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 283 (399)
Q Consensus 204 i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v 283 (399)
+.+....+...++......-.+-|+.-. +-.+++||||+.+.+ ....|..++.+++.+.. .++ .+
T Consensus 147 ~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g---------k~~~qeefFh~FN~l~~---~~k-qI 211 (408)
T COG0593 147 VYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG---------KERTQEEFFHTFNALLE---NGK-QI 211 (408)
T ss_pred EeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC---------ChhHHHHHHHHHHHHHh---cCC-EE
Confidence 8888888877776554444344555544 456999999999965 35568888888888753 333 45
Q ss_pred EEecC-CCCC---CCccccCCCCcee--EEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHH
Q 015875 284 LMATN-RPDT---LDPALLRPGRLDR--KVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCT 356 (399)
Q Consensus 284 I~atn-~~~~---ld~al~r~gRf~~--~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~ 356 (399)
|.|+. .|.. +.+.|++ ||.. .+.+.+|+.+.|..||+......++. ++.-...++..... +.+++..+++
T Consensus 212 vltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~ 288 (408)
T COG0593 212 VLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALN 288 (408)
T ss_pred EEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHH
Confidence 55554 4544 4588988 8876 78999999999999999977766654 33335667766644 6678888888
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhhc
Q 015875 357 EAGMFAIRARRKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 357 ~A~~~A~~~~~~~It~ed~~~ai~~v~~~~ 386 (399)
....+|...++ .||.+.+.++++......
T Consensus 289 ~l~~~a~~~~~-~iTi~~v~e~L~~~~~~~ 317 (408)
T COG0593 289 RLDAFALFTKR-AITIDLVKEILKDLLRAG 317 (408)
T ss_pred HHHHHHHhcCc-cCcHHHHHHHHHHhhccc
Confidence 87777766555 688888887777765443
No 153
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.60 E-value=2.8e-14 Score=142.27 Aligned_cols=221 Identities=21% Similarity=0.269 Sum_probs=141.0
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHh----hCC-CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh-hhh
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVK----LGI-DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYV 216 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~----~g~-~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~-~~~ 216 (399)
++|++++++.+..++....+....... -++ ....++||+||||||||++|+++|..++.+|..++++.+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 899999999998877432111100000 011 12468999999999999999999999999999999888753 466
Q ss_pred chh-HHHHHHHHHHH----HcCCCEEEEEecCCcccCCccCCCCC---CChHHHHHHHHHHHHhc--------CCCCCCC
Q 015875 217 GEG-ARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVG---GDNEVQRTMLEIVNQLD--------GFDARGN 280 (399)
Q Consensus 217 g~~-~~~v~~~f~~a----~~~~p~il~iDEiD~l~~~r~~~~~~---~~~~~~~~l~~ll~~l~--------~~~~~~~ 280 (399)
|.. ...+..++..+ ....++||||||||.+..++...+.+ +...+|+.|+++|+... ...+..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 664 33444444322 23467799999999998754322111 22478999999984210 0112235
Q ss_pred eEEEEecCCC---------------------------C-----------------------CCCccccCCCCceeEEEec
Q 015875 281 IKVLMATNRP---------------------------D-----------------------TLDPALLRPGRLDRKVEFG 310 (399)
Q Consensus 281 v~vI~atn~~---------------------------~-----------------------~ld~al~r~gRf~~~i~~~ 310 (399)
.++|+|+|-. + .+.|+|+ ||++.++.|.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f~ 316 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATLE 316 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeecC
Confidence 6778887751 0 0234444 4999999999
Q ss_pred CCCHHHHHHHHHHH----Hhcc-------CCCC---cccHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHH
Q 015875 311 LPDLESRTQIFKIH----TRTM-------NCER---DIRFELLARLC--PNSTGADIRSVCTEAGMFAIRA 365 (399)
Q Consensus 311 ~P~~~er~~Il~~~----~~~~-------~~~~---~~~~~~la~~~--~g~sg~di~~l~~~A~~~A~~~ 365 (399)
+.+.++..+|+... .+++ ++.- +...+.|+... ..+-.|.++.+++...+-+.-+
T Consensus 317 pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 99999999988752 2211 2221 12245666652 3455688888888877655443
No 154
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.59 E-value=7.1e-15 Score=152.10 Aligned_cols=213 Identities=18% Similarity=0.286 Sum_probs=138.5
Q ss_pred ccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhh
Q 015875 139 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 215 (399)
Q Consensus 139 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~ 215 (399)
.+.+++|.+..++++.+.+... ...+..|||+|++||||+++|++|+... +.+|+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 6778999999999999998762 3456789999999999999999999864 5799999998774321
Q ss_pred -----hchhH----HHH---HHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CCC----C
Q 015875 216 -----VGEGA----RMV---RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD----A 277 (399)
Q Consensus 216 -----~g~~~----~~v---~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~----~ 277 (399)
.|... ... ...|.. ...++|||||||.+ +.+.|..|+++++.-. ... .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhh---cCCCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCcce
Confidence 11100 000 112333 34569999999999 7899999999987532 111 1
Q ss_pred CCCeEEEEecCCC--CCCCccccCCCCcee--EEEecCCCHHHHHH----HHHHHHh----ccCC-CCcccHHHHHHHCC
Q 015875 278 RGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ----IFKIHTR----TMNC-ERDIRFELLARLCP 344 (399)
Q Consensus 278 ~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~----Il~~~~~----~~~~-~~~~~~~~la~~~~ 344 (399)
..++.+|++|+.. ..+....+++..|++ .+.+..|++++|.+ +++.+++ +++. ...++.+.+..+..
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~ 399 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLA 399 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 2368999999874 222223333222222 67788899999877 3333333 3332 24577788887777
Q ss_pred CCcHHHHHHHHHHHHHHHHHHcCC------CccHHHHH
Q 015875 345 NSTGADIRSVCTEAGMFAIRARRK------TVTEKDFL 376 (399)
Q Consensus 345 g~sg~di~~l~~~A~~~A~~~~~~------~It~ed~~ 376 (399)
.-|+++++++-+.....+...... .|+.+++.
T Consensus 400 y~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~ 437 (509)
T PRK05022 400 YDWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLD 437 (509)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcC
Confidence 667766666555444444433332 45665543
No 155
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.59 E-value=1.5e-15 Score=154.67 Aligned_cols=282 Identities=16% Similarity=0.209 Sum_probs=168.8
Q ss_pred ccchhhHHhhhhcCCceeeeeeeecCCCCcCCceEEeeccc-ceEEEecCCCCCCCCCCCCceeeecCccceeeccCCCC
Q 015875 44 WDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQI-AKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPK 122 (399)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 122 (399)
..+...++...+..|+++.+.....+. .+..+..| .+|+.++ +++.++..--+..+... . +..
T Consensus 61 ~~~l~~i~~~~~~~piI~lt~~~~~~~------~~~a~~~Ga~dyl~KP---~~~~~L~~~i~~~~~~~--~----l~~- 124 (445)
T TIGR02915 61 LAALQQILAIAPDTKVIVITGNDDREN------AVKAIGLGAYDFYQKP---IDPDVLKLIVDRAFHLY--T----LET- 124 (445)
T ss_pred HHHHHHHHhhCCCCCEEEEecCCCHHH------HHHHHHCCccEEEeCC---CCHHHHHHHHhhhhhhh--h----hHH-
Confidence 445566666677788887765443221 23344555 6788887 55555433100000000 0 000
Q ss_pred CCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---
Q 015875 123 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT--- 199 (399)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~--- 199 (399)
....+. .......+.+++|.+..++.+.+.+... .....+++|+|++||||+++|++++...
T Consensus 125 ---~~~~l~-~~~~~~~~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~ 189 (445)
T TIGR02915 125 ---ENRRLQ-SALGGTALRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRK 189 (445)
T ss_pred ---HHHHhh-hhhhcccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcC
Confidence 000000 0011124456889898888888877541 1345679999999999999999999865
Q ss_pred CCceEEEeccchhhhhhchhHHHHHHHHH---------------HHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHH
Q 015875 200 DACFIRVIGSELVQKYVGEGARMVRELFQ---------------MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRT 264 (399)
Q Consensus 200 ~~~~i~v~~s~l~~~~~g~~~~~v~~~f~---------------~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~ 264 (399)
+.+|+.++|..+...... ..+|. .......++||||||+.| +...|..
T Consensus 190 ~~~~v~v~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~ 252 (445)
T TIGR02915 190 DKRFVAINCAAIPENLLE------SELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL-----------PLNLQAK 252 (445)
T ss_pred CCCeEEEECCCCChHHHH------HHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC-----------CHHHHHH
Confidence 578999999876432111 11221 111234569999999999 8899999
Q ss_pred HHHHHHHhc--CCC----CCCCeEEEEecCCC-------CCCCccccCCCCceeEEEecCCCHHHHHH----HHHHHHhc
Q 015875 265 MLEIVNQLD--GFD----ARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRT 327 (399)
Q Consensus 265 l~~ll~~l~--~~~----~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~ 327 (399)
++++++.-. ... ...++.+|++|+.. ..+.+.|.. |+ ..+.+..|++++|.+ +++.+++.
T Consensus 253 l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~ 329 (445)
T TIGR02915 253 LLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLER 329 (445)
T ss_pred HHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHH
Confidence 999998632 111 12368899999864 223333333 44 357888899999887 34444433
Q ss_pred ----cCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHH
Q 015875 328 ----MNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFL 376 (399)
Q Consensus 328 ----~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~ 376 (399)
.+.. ..++.+.+..+....|+++++.+-+.+...+.......|+.+|+.
T Consensus 330 ~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~~~~i~~~~l~ 383 (445)
T TIGR02915 330 FARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQITAEDLG 383 (445)
T ss_pred HHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCcccHHHcC
Confidence 2322 356777787777766776776666655555555566677777763
No 156
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.58 E-value=1.9e-14 Score=154.05 Aligned_cols=210 Identities=21% Similarity=0.315 Sum_probs=139.0
Q ss_pred CCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh
Q 015875 137 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 213 (399)
Q Consensus 137 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~ 213 (399)
+.+|++++|.+..++.+.+.+... .....+|||+|++|||||++|++|+... +.+|+.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 467889999999999998888752 2345689999999999999999999854 57999999987532
Q ss_pred h-----hhch----hHH---HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CCC---
Q 015875 214 K-----YVGE----GAR---MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD--- 276 (399)
Q Consensus 214 ~-----~~g~----~~~---~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~--- 276 (399)
. ..|. ... .....|+. ...++||||||+.+ +.+.|..|+.+++.-. ...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~---a~~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFEL---ADKSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHh---cCCCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCC
Confidence 2 1111 000 11122333 33569999999999 8899999999997632 111
Q ss_pred -CCCCeEEEEecCCC--CCCCccccCCCCcee--EEEecCCCHHHHHH----HHHHHHhc----cCCC-CcccHHHHHHH
Q 015875 277 -ARGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ----IFKIHTRT----MNCE-RDIRFELLARL 342 (399)
Q Consensus 277 -~~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~----Il~~~~~~----~~~~-~~~~~~~la~~ 342 (399)
...++.+|++|+.. ..+....+++..|++ .+.+..|++++|.+ +++.++.+ ++.. ..+..+.+..+
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L 586 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTL 586 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 12468999999874 223333344323323 67888999999877 44444433 3322 34677778777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCcc
Q 015875 343 CPNSTGADIRSVCTEAGMFAIRARRKTVT 371 (399)
Q Consensus 343 ~~g~sg~di~~l~~~A~~~A~~~~~~~It 371 (399)
....|+++++++-+.+...+.......|+
T Consensus 587 ~~y~WPGNvrEL~~~i~~a~~~~~~~~i~ 615 (686)
T PRK15429 587 SNMEWPGNVRELENVIERAVLLTRGNVLQ 615 (686)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhCCCCccc
Confidence 77777766666655555555444444444
No 157
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.57 E-value=4.1e-14 Score=138.15 Aligned_cols=219 Identities=19% Similarity=0.196 Sum_probs=142.8
Q ss_pred ccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-------CCceE-------
Q 015875 139 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-------DACFI------- 204 (399)
Q Consensus 139 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-------~~~~i------- 204 (399)
.|..|+|+++++..|.-.+..| ...+++|.|+||+|||+++++++..+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4678999999999886665432 24579999999999999999999865 22221
Q ss_pred --EEeccch----------------hh--------hhhchhHHHHHHH-------HH--HHHcCCCEEEEEecCCcccCC
Q 015875 205 --RVIGSEL----------------VQ--------KYVGEGARMVREL-------FQ--MARSKKACIVFFDEVDAIGGA 249 (399)
Q Consensus 205 --~v~~s~l----------------~~--------~~~g~~~~~v~~~-------f~--~a~~~~p~il~iDEiD~l~~~ 249 (399)
..+|... .. ...|.. .+... |+ .......++||+||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~--d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L--- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL--DIERALTEGVKAFEPGLLARANRGILYIDEVNLL--- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch--hHhhHhhcCCEEeecCcceeccCCEEEecChHhC---
Confidence 0001100 00 111110 00110 00 011123469999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHh------cCC--CCCCCeEEEEecCCCC-CCCccccCCCCceeEEEecCCCH-HHHHH
Q 015875 250 RFDDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLPDL-ESRTQ 319 (399)
Q Consensus 250 r~~~~~~~~~~~~~~l~~ll~~l------~~~--~~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~~~~P~~-~er~~ 319 (399)
+...|..|++++++- ++. ....++++|+++|..+ .++++++. ||...+.++.|+. ++|.+
T Consensus 144 --------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 144 --------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred --------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHH
Confidence 788999999998752 111 1124677888888654 68899999 9999999999865 88889
Q ss_pred HHHHHHhcc----C----C-----------------CCcc--c---HHH---HHHHCCCCcHHHHHHHHHHHHHHHHHHc
Q 015875 320 IFKIHTRTM----N----C-----------------ERDI--R---FEL---LARLCPNSTGADIRSVCTEAGMFAIRAR 366 (399)
Q Consensus 320 Il~~~~~~~----~----~-----------------~~~~--~---~~~---la~~~~g~sg~di~~l~~~A~~~A~~~~ 366 (399)
|++...... . + ...+ + .+. ++..+..-+++--..+++.|...|..++
T Consensus 214 IL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~G 293 (337)
T TIGR02030 214 IVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEG 293 (337)
T ss_pred HHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcC
Confidence 888743210 0 0 0111 0 122 2333333355667788899999999999
Q ss_pred CCCccHHHHHHHHHHHHhh
Q 015875 367 RKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 367 ~~~It~ed~~~ai~~v~~~ 385 (399)
+..|+.+|+..+..-+..-
T Consensus 294 R~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 294 RTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999888653
No 158
>PRK09087 hypothetical protein; Validated
Probab=99.56 E-value=2.6e-13 Score=125.91 Aligned_cols=172 Identities=21% Similarity=0.236 Sum_probs=115.4
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCC
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGV 255 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~ 255 (399)
..++||||+|+|||||++++++..+..++ +...+... .+..... .+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSD-----------AANAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchH-----------HHHhhhc---CeEEEECCCCCCC-------
Confidence 35999999999999999999988765533 33222111 1111111 3899999998721
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---CCCccccCCCCce--eEEEecCCCHHHHHHHHHHHHhccCC
Q 015875 256 GGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNC 330 (399)
Q Consensus 256 ~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~---~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~ 330 (399)
+ +..++.+++.+.. .+..+||+++..|. ...+.+++ |+. ..+++..|+.++|.++++.+++..++
T Consensus 102 --~---~~~lf~l~n~~~~---~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 102 --D---ETGLFHLINSVRQ---AGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred --C---HHHHHHHHHHHHh---CCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 1 4557777776542 34444554444443 24688888 775 58999999999999999999987654
Q ss_pred C-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 015875 331 E-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 331 ~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v 382 (399)
. ++...+.|+....+ +.+.+..+++.....+...+ ..||...+.++++.+
T Consensus 172 ~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 172 YVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 3 23346777877764 44556666666666665544 449999999988765
No 159
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.56 E-value=1.4e-13 Score=150.37 Aligned_cols=201 Identities=24% Similarity=0.353 Sum_probs=138.8
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhhCC----CCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGI----DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 213 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~----~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~ 213 (399)
..|+|++.+++.+.+.+... ..|+ +|...+||+||||||||++|+++|..+ +.++++++++++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 35999999999999999752 1122 234569999999999999999999976 56899999988754
Q ss_pred h-----hhchhHHH-----HHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC------C
Q 015875 214 K-----YVGEGARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------A 277 (399)
Q Consensus 214 ~-----~~g~~~~~-----v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~ 277 (399)
. ..|...+. ...+....+....+||+||||+.+ ++.+++.|++++++-.-.+ .
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~v~~~Ll~~l~~g~l~d~~g~~vd 705 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPDVFNVLLQVLDDGRLTDGQGRTVD 705 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHHHHHHHHHHHhcCceecCCCeEEe
Confidence 2 22222111 123444455566789999999998 8999999999997642111 1
Q ss_pred CCCeEEEEecCCCC-------------------------CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhc-----
Q 015875 278 RGNIKVLMATNRPD-------------------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT----- 327 (399)
Q Consensus 278 ~~~v~vI~atn~~~-------------------------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~----- 327 (399)
-.+++||+|||... .+.|.|+. |++.++.|.+++.++..+|+...+..
T Consensus 706 ~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l 783 (852)
T TIGR03346 706 FRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRL 783 (852)
T ss_pred cCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHH
Confidence 24677999999721 13456666 99999999999999999988866642
Q ss_pred --cCCCCccc---HHHHHHHC--CCCcHHHHHHHHHHHHHHH
Q 015875 328 --MNCERDIR---FELLARLC--PNSTGADIRSVCTEAGMFA 362 (399)
Q Consensus 328 --~~~~~~~~---~~~la~~~--~g~sg~di~~l~~~A~~~A 362 (399)
.++...++ .+.|+... ..+..+.++.+++......
T Consensus 784 ~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~ 825 (852)
T TIGR03346 784 AERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENP 825 (852)
T ss_pred HHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHH
Confidence 12222233 34455432 1345578888777766544
No 160
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.55 E-value=1.7e-13 Score=149.27 Aligned_cols=200 Identities=24% Similarity=0.334 Sum_probs=133.7
Q ss_pred cccccCcHHHHHHHHHHHhcCCCChhHHHhhCCC----CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchh
Q 015875 140 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 212 (399)
Q Consensus 140 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~----~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~ 212 (399)
...++|++.+++.+...+... ..|+. |...+||+||||||||++|+++|+.+ +.++++++|+++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 345999999999999999752 12222 22468999999999999999999876 4679999998875
Q ss_pred hh-----hhchhHHH-----HHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC------
Q 015875 213 QK-----YVGEGARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ 276 (399)
Q Consensus 213 ~~-----~~g~~~~~-----v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------ 276 (399)
.. .+|..... -..+....+....++|+|||++.+ ++.+++.|+++++.-.-.+
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----------~~~v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HPDVFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----------CHHHHHHHHHHHhhCceecCCceEE
Confidence 42 12221111 112233334455589999999998 7899999999997632111
Q ss_pred CCCCeEEEEecCCC-------------------------CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhcc---
Q 015875 277 ARGNIKVLMATNRP-------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM--- 328 (399)
Q Consensus 277 ~~~~v~vI~atn~~-------------------------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~--- 328 (399)
...+.++|+|||.. ..+.|+|+. |++.++.|.+++.++..+|++..+...
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~r 785 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKR 785 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 12356689999862 124567777 999999999999999999888776542
Q ss_pred ----CCCCcccHHHHHHHC-CCCc----HHHHHHHHHHHHH
Q 015875 329 ----NCERDIRFELLARLC-PNST----GADIRSVCTEAGM 360 (399)
Q Consensus 329 ----~~~~~~~~~~la~~~-~g~s----g~di~~l~~~A~~ 360 (399)
++.-.++.+.+..+. .||+ .+.|+.+++.-..
T Consensus 786 l~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~ 826 (857)
T PRK10865 786 LEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIE 826 (857)
T ss_pred HHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHH
Confidence 222233433333222 2443 4666666655443
No 161
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.55 E-value=1.2e-13 Score=117.27 Aligned_cols=140 Identities=43% Similarity=0.667 Sum_probs=98.2
Q ss_pred CcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhchhHH
Q 015875 145 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGAR 221 (399)
Q Consensus 145 G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~~~~ 221 (399)
|.+.+++.+...+.. ....+++++||||||||++++.+++.+ +.+++.+++.+...........
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 566777777776643 245689999999999999999999988 8899999988766543322211
Q ss_pred H---HHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC-CCCCCeEEEEecCCCC--CCCc
Q 015875 222 M---VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF-DARGNIKVLMATNRPD--TLDP 295 (399)
Q Consensus 222 ~---v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~-~~~~~v~vI~atn~~~--~ld~ 295 (399)
. ....+.......+.+|++||++.+ .......+.+++..+... ....++.+|+++|... .+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSL-----------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhh-----------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 1 122233344567789999999988 344556666666654321 1235788999998876 6777
Q ss_pred cccCCCCceeEEEec
Q 015875 296 ALLRPGRLDRKVEFG 310 (399)
Q Consensus 296 al~r~gRf~~~i~~~ 310 (399)
.+.+ ||+..+.++
T Consensus 138 ~~~~--r~~~~i~~~ 150 (151)
T cd00009 138 ALYD--RLDIRIVIP 150 (151)
T ss_pred hHHh--hhccEeecC
Confidence 7777 988777765
No 162
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.55 E-value=2e-14 Score=136.73 Aligned_cols=218 Identities=17% Similarity=0.236 Sum_probs=151.5
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEecc
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 209 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s 209 (399)
...+...|+.|++.+..++.+.+-.... ......+||.|.+||||.++||+.+... ..||+.+||.
T Consensus 196 ~~~~~~~F~~~v~~S~~mk~~v~qA~k~-----------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA 264 (511)
T COG3283 196 AAQDVSGFEQIVAVSPKMKHVVEQAQKL-----------AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCA 264 (511)
T ss_pred ccccccchHHHhhccHHHHHHHHHHHHh-----------hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecC
Confidence 3456778889999998888776655431 1224469999999999999999999854 6899999997
Q ss_pred chhhhh-----hchh--HHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHh--cCCCC---
Q 015875 210 ELVQKY-----VGEG--ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL--DGFDA--- 277 (399)
Q Consensus 210 ~l~~~~-----~g~~--~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l--~~~~~--- 277 (399)
.+.... .|-. ..--..+|+.|.. +.+|+|||..+ ++..|..++++|+.- .....
T Consensus 265 ~lPe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----------Sp~lQaKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 265 SLPEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----------SPRLQAKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred CCchhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----------CHHHHHHHHHHhcCCceeecCCcce
Confidence 664331 1111 1112345666544 49999999998 899999999999852 22221
Q ss_pred -CCCeEEEEecCCC--CCCCccccCCCCcee--EEEecCCCHHHHHH--------HHHHHHhccCCC-CcccHHHHHHHC
Q 015875 278 -RGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ--------IFKIHTRTMNCE-RDIRFELLARLC 343 (399)
Q Consensus 278 -~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~--------Il~~~~~~~~~~-~~~~~~~la~~~ 343 (399)
.-+|.||+||..+ +.+...-+|.+.|++ ++.+..|++++|.. ++..++.+.++. +..+...+..++
T Consensus 331 v~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~ 410 (511)
T COG3283 331 VHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLT 410 (511)
T ss_pred EEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Confidence 2369999999764 555666677767766 88899999999876 445555666654 566777777788
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHH
Q 015875 344 PNSTGADIRSVCTEAGMFAIRARRKTVTEKDF 375 (399)
Q Consensus 344 ~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~ 375 (399)
.+-|+++++++-+.....+.......++.+|+
T Consensus 411 ~y~WpGNVRqL~N~iyRA~s~~Eg~~l~i~~i 442 (511)
T COG3283 411 RYAWPGNVRQLKNAIYRALTLLEGYELRIEDI 442 (511)
T ss_pred HcCCCccHHHHHHHHHHHHHHhccCccchhhc
Confidence 77788777777666555544444444444443
No 163
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.54 E-value=1.1e-13 Score=146.52 Aligned_cols=221 Identities=22% Similarity=0.280 Sum_probs=145.4
Q ss_pred ccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-------------------
Q 015875 139 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT------------------- 199 (399)
Q Consensus 139 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~------------------- 199 (399)
.|.+|+|++.++..+.-.+..+ ...+|||+|++|||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4678999999998887666542 12479999999999999999999887
Q ss_pred ----------------CCceEEEeccchhhhhhchh--HHHHH---HHHH--HHHcCCCEEEEEecCCcccCCccCCCCC
Q 015875 200 ----------------DACFIRVIGSELVQKYVGEG--ARMVR---ELFQ--MARSKKACIVFFDEVDAIGGARFDDGVG 256 (399)
Q Consensus 200 ----------------~~~~i~v~~s~l~~~~~g~~--~~~v~---~~f~--~a~~~~p~il~iDEiD~l~~~r~~~~~~ 256 (399)
..+|+.+.++......+|.. ...+. ..+. .......++||||||+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l---------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLL---------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhC----------
Confidence 24566655443322222321 11110 0000 011123459999999999
Q ss_pred CChHHHHHHHHHHHHhc------CC--CCCCCeEEEEecCCC-CCCCccccCCCCceeEEEecCC-CHHHHHHHHHHHHh
Q 015875 257 GDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRP-DTLDPALLRPGRLDRKVEFGLP-DLESRTQIFKIHTR 326 (399)
Q Consensus 257 ~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~-~~ld~al~r~gRf~~~i~~~~P-~~~er~~Il~~~~~ 326 (399)
+...|..|+++++.-. +. ....++.+|+|+|.. ..+.++|+. ||+..+.++.| +.+++.++++....
T Consensus 139 -~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 139 -DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred -CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHh
Confidence 7889999999987521 11 123468899998864 457889998 99988888876 45777777764322
Q ss_pred ccC-------------------------CC-----CcccHHHHHHHC--CCC-cHHHHHHHHHHHHHHHHHHcCCCccHH
Q 015875 327 TMN-------------------------CE-----RDIRFELLARLC--PNS-TGADIRSVCTEAGMFAIRARRKTVTEK 373 (399)
Q Consensus 327 ~~~-------------------------~~-----~~~~~~~la~~~--~g~-sg~di~~l~~~A~~~A~~~~~~~It~e 373 (399)
... .. .+...+.++..+ .|. +.+-...+++.|...|..+++..|+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~ 295 (633)
T TIGR02442 216 FDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAE 295 (633)
T ss_pred hccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHH
Confidence 000 00 011123333322 233 345566788888899999999999999
Q ss_pred HHHHHHHHHHhh
Q 015875 374 DFLDAVNKVIKG 385 (399)
Q Consensus 374 d~~~ai~~v~~~ 385 (399)
|+..|+.-++.-
T Consensus 296 Dv~~A~~lvL~h 307 (633)
T TIGR02442 296 DVREAAELVLPH 307 (633)
T ss_pred HHHHHHHHHhhh
Confidence 999999999753
No 164
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.53 E-value=6e-14 Score=143.42 Aligned_cols=210 Identities=20% Similarity=0.278 Sum_probs=138.5
Q ss_pred ccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhh
Q 015875 139 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 215 (399)
Q Consensus 139 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~ 215 (399)
.+..++|.+..+..+.+.+... ......++++|++||||+++|++++... +.+|+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~ 209 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKI-----------ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL 209 (457)
T ss_pred cccceecccHHHhHHHHHHHHH-----------cCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH
Confidence 3456888888888877766541 2345679999999999999999998864 5799999998764321
Q ss_pred hchhHHHHHHHHH---------------HHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CCC--
Q 015875 216 VGEGARMVRELFQ---------------MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD-- 276 (399)
Q Consensus 216 ~g~~~~~v~~~f~---------------~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~-- 276 (399)
. -..+|. .......++|||||||.+ +...|..++++++.-. ...
T Consensus 210 ~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~ 272 (457)
T PRK11361 210 L------ESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEM-----------PLVLQAKLLRILQEREFERIGGH 272 (457)
T ss_pred H------HHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhC-----------CHHHHHHHHHHHhcCcEEeCCCC
Confidence 1 111221 111234569999999999 7889999999987632 111
Q ss_pred --CCCCeEEEEecCCCC-------CCCccccCCCCceeEEEecCCCHHHHHH----HHHHHHhcc----CCC-CcccHHH
Q 015875 277 --ARGNIKVLMATNRPD-------TLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRTM----NCE-RDIRFEL 338 (399)
Q Consensus 277 --~~~~v~vI~atn~~~-------~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~~----~~~-~~~~~~~ 338 (399)
...++.+|++|+..- .+.+.+.. |+ ..+.+..|++.+|.+ ++..++.+. +.. ..++.+.
T Consensus 273 ~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l-~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a 349 (457)
T PRK11361 273 QTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RL-NVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMA 349 (457)
T ss_pred ceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hh-ccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 123588999998641 22233332 33 267888899998876 333444332 222 3567777
Q ss_pred HHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 339 LARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 339 la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
+..+...-|+++++.+-+.....+.......|+.+|+...+
T Consensus 350 ~~~L~~~~wpgNv~eL~~~~~~~~~~~~~~~i~~~~l~~~~ 390 (457)
T PRK11361 350 MSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQI 390 (457)
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHhCCCCcccHHHChHhh
Confidence 77777766776777666655555555567778888886544
No 165
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.53 E-value=3.5e-13 Score=146.46 Aligned_cols=197 Identities=22% Similarity=0.312 Sum_probs=135.7
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCC---CCC-ceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhh
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGID---PPK-GVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK 214 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~---~~~-~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~ 214 (399)
.|+|++.+++.+.+.+... ..|+. .|. .+||+||||+|||.+|+++|..+ ...++.++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred eEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 4999999999999998752 12322 233 48999999999999999999987 457899999887543
Q ss_pred -----hhchhHHHH-----HHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC------C
Q 015875 215 -----YVGEGARMV-----RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA------R 278 (399)
Q Consensus 215 -----~~g~~~~~v-----~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~------~ 278 (399)
..|.....+ ..+.+..+.+.++||+|||||.+ ++.+++.|+++++...-.+. -
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHHhhcceeecCCCcEEec
Confidence 223222111 12345556678899999999988 78899999999986421111 2
Q ss_pred CCeEEEEecCCCC-----------------------------CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhcc-
Q 015875 279 GNIKVLMATNRPD-----------------------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM- 328 (399)
Q Consensus 279 ~~v~vI~atn~~~-----------------------------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~- 328 (399)
.+.++|+|||... .+.|++++ |++ +|.|.+.+.++..+|+...+...
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~ 784 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIA 784 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHH
Confidence 4688999998521 14566777 996 89999999999999998776442
Q ss_pred -------CCCCccc---HHHHHHHCCC--CcHHHHHHHHHHHHH
Q 015875 329 -------NCERDIR---FELLARLCPN--STGADIRSVCTEAGM 360 (399)
Q Consensus 329 -------~~~~~~~---~~~la~~~~g--~sg~di~~l~~~A~~ 360 (399)
++.-.++ .+.|+....+ +-.+.++.+++.-..
T Consensus 785 ~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~ 828 (852)
T TIGR03345 785 RRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLL 828 (852)
T ss_pred HHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Confidence 2221222 4456655432 345677766655443
No 166
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.51 E-value=6.1e-14 Score=135.08 Aligned_cols=140 Identities=19% Similarity=0.238 Sum_probs=104.9
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh--hhchhHHH----------HHHHHHHHHcCCCEEEEEe
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--YVGEGARM----------VRELFQMARSKKACIVFFD 241 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~--~~g~~~~~----------v~~~f~~a~~~~p~il~iD 241 (399)
..+++||.||||||||++++.+|..++.++++++++..... .+|...-. ....+..|. ..++++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence 45689999999999999999999999999999998765543 34432110 111222232 245689999
Q ss_pred cCCcccCCccCCCCCCChHHHHHHHHHHHH-----hc----CCCCCCCeEEEEecCCCC------------CCCccccCC
Q 015875 242 EVDAIGGARFDDGVGGDNEVQRTMLEIVNQ-----LD----GFDARGNIKVLMATNRPD------------TLDPALLRP 300 (399)
Q Consensus 242 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~-----l~----~~~~~~~v~vI~atn~~~------------~ld~al~r~ 300 (399)
|||.. +++++..|..+|+. +. .+...++++||+|+|... .++++++.
T Consensus 142 Ein~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99998 78889998888874 11 123455789999999853 45788988
Q ss_pred CCceeEEEecCCCHHHHHHHHHHHHhc
Q 015875 301 GRLDRKVEFGLPDLESRTQIFKIHTRT 327 (399)
Q Consensus 301 gRf~~~i~~~~P~~~er~~Il~~~~~~ 327 (399)
||..++.+..|+.++-.+|+......
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99778899999999999999876543
No 167
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.51 E-value=5.4e-13 Score=140.10 Aligned_cols=135 Identities=17% Similarity=0.238 Sum_probs=91.1
Q ss_pred EEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc----CC------------CCCCCeEEEEecCCC--CCCCccc
Q 015875 236 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GF------------DARGNIKVLMATNRP--DTLDPAL 297 (399)
Q Consensus 236 ~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~~------------~~~~~v~vI~atn~~--~~ld~al 297 (399)
++|||||++.| +...|..|+++|+.-. +. .-..++++|+++|.. ..+++.+
T Consensus 219 GtL~Ldei~~L-----------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l 287 (608)
T TIGR00764 219 GVLYIDEIKTM-----------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPAL 287 (608)
T ss_pred CEEEEEChHhC-----------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHH
Confidence 58888888888 6788999999987522 10 012368899999974 6789999
Q ss_pred cCCCCce---eEEEecC--C-CHHHHHHHHHHH---HhccCCCCcccHHHHHHHCC------------CCcHHHHHHHHH
Q 015875 298 LRPGRLD---RKVEFGL--P-DLESRTQIFKIH---TRTMNCERDIRFELLARLCP------------NSTGADIRSVCT 356 (399)
Q Consensus 298 ~r~gRf~---~~i~~~~--P-~~~er~~Il~~~---~~~~~~~~~~~~~~la~~~~------------g~sg~di~~l~~ 356 (399)
++ ||+ ..+.|+. | +.+.|.++.+.. +++.+..+.++.+.+..... ..+.+++.++|+
T Consensus 288 ~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR 365 (608)
T TIGR00764 288 RS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVR 365 (608)
T ss_pred HH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHH
Confidence 98 998 5566643 4 455555544433 23332223344333332221 124599999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 357 EAGMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 357 ~A~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
+|...|..+++..|+.+|+.+|++...
T Consensus 366 ~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 366 AAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 998888888888999999999987653
No 168
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.51 E-value=1.1e-12 Score=131.93 Aligned_cols=212 Identities=17% Similarity=0.193 Sum_probs=133.5
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC--ceEEEeccc-hhhhhhchh
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSE-LVQKYVGEG 219 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~--~~i~v~~s~-l~~~~~g~~ 219 (399)
|+|.+++++.+..++. ...+|||+||||||||++|+++|...+. +|..+.+.- .....+|..
T Consensus 22 i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 22 LYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred ccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 8899988888877764 3568999999999999999999997643 444443321 111222221
Q ss_pred -HHHH--HHHHHHHHcC---CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc----CCCCC-CCeEEEEecC
Q 015875 220 -ARMV--RELFQMARSK---KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GFDAR-GNIKVLMATN 288 (399)
Q Consensus 220 -~~~v--~~~f~~a~~~---~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~~~~~-~~v~vI~atn 288 (399)
-... ...|.....+ ...+||+|||..+ ++..|..|++++++-. +.... +..++++|||
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN 155 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN 155 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC
Confidence 0000 1122211111 2349999999987 7899999999997632 11111 1234566667
Q ss_pred CCC---CCCccccCCCCceeEEEecCCC-HHHHHHHHHHHHhc--cCC--CCccc--------------------HHH--
Q 015875 289 RPD---TLDPALLRPGRLDRKVEFGLPD-LESRTQIFKIHTRT--MNC--ERDIR--------------------FEL-- 338 (399)
Q Consensus 289 ~~~---~ld~al~r~gRf~~~i~~~~P~-~~er~~Il~~~~~~--~~~--~~~~~--------------------~~~-- 338 (399)
... ...++++. ||-..+.+|+|+ .++..+++...... ... ...++ .+.
T Consensus 156 ~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~ 233 (498)
T PRK13531 156 ELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIF 233 (498)
T ss_pred CCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHH
Confidence 432 23347887 997789999996 46667777654221 101 01111 111
Q ss_pred -HHHH---C---CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 339 -LARL---C---PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 339 -la~~---~---~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
|... + ...|+|--..+++.|...|..+++..|+++|+. .+..+.
T Consensus 234 ~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL 284 (498)
T PRK13531 234 QLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCL 284 (498)
T ss_pred HHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHh
Confidence 2221 1 236888889999999999999999999999999 666654
No 169
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=1.2e-12 Score=128.93 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=127.2
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc-------eEEE-
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------FIRV- 206 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~-------~i~v- 206 (399)
..|..+++|+|++++++.|..++.. -+.|..+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 5678889999999999999999875 1446679999999999999999999987541 1000
Q ss_pred ---ecc---ch--------h--hhh--h-------chhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCC
Q 015875 207 ---IGS---EL--------V--QKY--V-------GEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGG 257 (399)
Q Consensus 207 ---~~s---~l--------~--~~~--~-------g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~ 257 (399)
.|. .+ . ... . .-+...++.+.+... .....|++|||+|.|
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------- 153 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------- 153 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------
Confidence 010 00 0 000 0 001233444433322 345569999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHH
Q 015875 258 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFE 337 (399)
Q Consensus 258 ~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~ 337 (399)
+...++.|+..+++ +..++.+|..|+.+..+.|.+++ |+ ..+.|++|+.++..+++.......++. +....
T Consensus 154 ~~~aanaLLk~LEE-----pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~ 224 (351)
T PRK09112 154 NRNAANAILKTLEE-----PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITE 224 (351)
T ss_pred CHHHHHHHHHHHhc-----CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHH
Confidence 67778888888875 34456677777888888899988 88 799999999999999998743222211 12245
Q ss_pred HHHHHCCCCcHHHHHHHH
Q 015875 338 LLARLCPNSTGADIRSVC 355 (399)
Q Consensus 338 ~la~~~~g~sg~di~~l~ 355 (399)
.++..+.| +++...+++
T Consensus 225 ~i~~~s~G-~pr~Al~ll 241 (351)
T PRK09112 225 ALLQRSKG-SVRKALLLL 241 (351)
T ss_pred HHHHHcCC-CHHHHHHHH
Confidence 66666665 454444444
No 170
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.50 E-value=3.4e-14 Score=145.77 Aligned_cols=210 Identities=20% Similarity=0.305 Sum_probs=143.9
Q ss_pred ccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhh
Q 015875 139 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 215 (399)
Q Consensus 139 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~ 215 (399)
.+.+++|.+..++.+.+.+... ......++|+|++|||||++|++++... +.+|+.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~-----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL-----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH-----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 4567899999988888777541 2345679999999999999999999975 5799999998773321
Q ss_pred hchhHHHHHHHHHH---------------HHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CCC--
Q 015875 216 VGEGARMVRELFQM---------------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD-- 276 (399)
Q Consensus 216 ~g~~~~~v~~~f~~---------------a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~-- 276 (399)
. -..+|.. ......+.|||||||.+ +...|..|+++++.-. ...
T Consensus 205 ~------~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 205 I------ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGY 267 (469)
T ss_pred H------HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCC
Confidence 1 1122221 11234569999999999 7899999999987632 111
Q ss_pred --CCCCeEEEEecCCC-------CCCCccccCCCCceeEEEecCCCHHHHHH----HHHHHHhc----cCCC-CcccHHH
Q 015875 277 --ARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRT----MNCE-RDIRFEL 338 (399)
Q Consensus 277 --~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~----~~~~-~~~~~~~ 338 (399)
...++.+|+||+.. ..+.+.|.. |+ ..+.+..|++++|.+ ++..+++. .+.. ..++.+.
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a 344 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPET 344 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 12367899999763 123344444 44 357788888888776 44444433 2222 2466778
Q ss_pred HHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 339 LARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 339 la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
+..+...-|+++++++-+.+...+.......|+.+|+...+
T Consensus 345 ~~~L~~~~wpgNv~eL~~~i~~~~~~~~~~~i~~~~l~~~~ 385 (469)
T PRK10923 345 EAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGEL 385 (469)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhCCCCcccHHHCcHhh
Confidence 88888777887777777766666666677889999986544
No 171
>PHA02244 ATPase-like protein
Probab=99.50 E-value=1e-12 Score=128.11 Aligned_cols=127 Identities=23% Similarity=0.269 Sum_probs=88.3
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhch--hHHHHH--HHHHHHHcCCCEEEEEecCCcccCC
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGE--GARMVR--ELFQMARSKKACIVFFDEVDAIGGA 249 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~--~~~~v~--~~f~~a~~~~p~il~iDEiD~l~~~ 249 (399)
.+.+|||+||||||||++|+++|+.++.+|+.++...-.....|. ....+. .++... ..+++|+|||++.+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a--- 192 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDAS--- 192 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcC---
Confidence 355799999999999999999999999999999842100011110 000111 222222 24569999999998
Q ss_pred ccCCCCCCChHHHHHHHHHHHHh--c----CCCCCCCeEEEEecCCC-----------CCCCccccCCCCceeEEEecCC
Q 015875 250 RFDDGVGGDNEVQRTMLEIVNQL--D----GFDARGNIKVLMATNRP-----------DTLDPALLRPGRLDRKVEFGLP 312 (399)
Q Consensus 250 r~~~~~~~~~~~~~~l~~ll~~l--~----~~~~~~~v~vI~atn~~-----------~~ld~al~r~gRf~~~i~~~~P 312 (399)
+++++..|..+++.. + ......++.+|+|+|.+ ..+++++++ || ..|+|..|
T Consensus 193 --------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp 261 (383)
T PHA02244 193 --------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYD 261 (383)
T ss_pred --------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCC
Confidence 788888888888631 1 11234688999999973 567899998 99 67999999
Q ss_pred CHHH
Q 015875 313 DLES 316 (399)
Q Consensus 313 ~~~e 316 (399)
+..+
T Consensus 262 ~~~E 265 (383)
T PHA02244 262 EKIE 265 (383)
T ss_pred cHHH
Confidence 8433
No 172
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.49 E-value=1.1e-12 Score=129.65 Aligned_cols=178 Identities=19% Similarity=0.145 Sum_probs=124.4
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceE----------
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI---------- 204 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i---------- 204 (399)
..|.++++|+|++.+++.|.+.+.. -+.+..+||+||+|+||+++|.++|+.+-+.--
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 5778899999999999999999875 245668999999999999999999997632100
Q ss_pred -EE----ecc-----------chhhhhh---ch--------hHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCC
Q 015875 205 -RV----IGS-----------ELVQKYV---GE--------GARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDD 253 (399)
Q Consensus 205 -~v----~~s-----------~l~~~~~---g~--------~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~ 253 (399)
.+ .|. ++..-.. +. .-..+|++.+.+. ...+.|++|||+|.+
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------- 153 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------- 153 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------
Confidence 00 000 0000000 00 1233455444433 356779999999999
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCc
Q 015875 254 GVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD 333 (399)
Q Consensus 254 ~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~ 333 (399)
+...++.|+..+++ ...++++|++|+.++.+.+.+++ |+ ..+.|++|+.++..+++...... ..+
T Consensus 154 ----~~~aanaLLK~LEe-----pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~ 218 (365)
T PRK07471 154 ----NANAANALLKVLEE-----PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPD 218 (365)
T ss_pred ----CHHHHHHHHHHHhc-----CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCH
Confidence 77888888888875 34567788899999889999988 88 89999999999999888775421 111
Q ss_pred ccHHHHHHHCCCC
Q 015875 334 IRFELLARLCPNS 346 (399)
Q Consensus 334 ~~~~~la~~~~g~ 346 (399)
.....++..+.|.
T Consensus 219 ~~~~~l~~~s~Gs 231 (365)
T PRK07471 219 DPRAALAALAEGS 231 (365)
T ss_pred HHHHHHHHHcCCC
Confidence 1124566666663
No 173
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.48 E-value=1.9e-12 Score=132.81 Aligned_cols=216 Identities=23% Similarity=0.285 Sum_probs=148.8
Q ss_pred cccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHH----h-------------------hCCCCCCceeEeCCC
Q 015875 128 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFV----K-------------------LGIDPPKGVLCYGPP 184 (399)
Q Consensus 128 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~----~-------------------~g~~~~~~vLL~Gpp 184 (399)
..+|++++.+..|.|+.|.+.+=+.+..|+.. ..+..|. + .+-++.+-+||+|||
T Consensus 258 ~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~--WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~Gpp 335 (877)
T KOG1969|consen 258 DKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQ--WDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPP 335 (877)
T ss_pred cceeecccChhHHHHHhcchhHHHHHHHHHHh--hcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCC
Confidence 34899999999999999999999998888863 3344443 1 122334569999999
Q ss_pred CCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHH--------cCCCEEEEEecCCcccCCccCCCCC
Q 015875 185 GTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMAR--------SKKACIVFFDEVDAIGGARFDDGVG 256 (399)
Q Consensus 185 GtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~--------~~~p~il~iDEiD~l~~~r~~~~~~ 256 (399)
|.||||||+.+|++.|..++.||+|+-.+ ...++.....|- ...|..|++||||.-
T Consensus 336 GlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa---------- 399 (877)
T KOG1969|consen 336 GLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA---------- 399 (877)
T ss_pred CCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCC----------
Confidence 99999999999999999999999987533 222333222221 256889999999975
Q ss_pred CChHHHHHHHHHHHH----hcCCCC---------CC---CeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHH
Q 015875 257 GDNEVQRTMLEIVNQ----LDGFDA---------RG---NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQI 320 (399)
Q Consensus 257 ~~~~~~~~l~~ll~~----l~~~~~---------~~---~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~I 320 (399)
.....++++.+++. ..|-.. +. .-.|||.||.. ..|+|+.---|...+.|.+|+..-..+-
T Consensus 400 -~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~R 476 (877)
T KOG1969|consen 400 -PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVER 476 (877)
T ss_pred -cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHH
Confidence 56777888888763 111111 00 12488999964 3566653225778999999988877777
Q ss_pred HHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcC
Q 015875 321 FKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARR 367 (399)
Q Consensus 321 l~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~ 367 (399)
|+..+...++. .+...|..+|+- +..|||+.++.....|....+
T Consensus 477 L~~IC~rE~mr--~d~~aL~~L~el-~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 477 LNEICHRENMR--ADSKALNALCEL-TQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred HHHHHhhhcCC--CCHHHHHHHHHH-hcchHHHHHHHHHHHHHhccc
Confidence 77777665543 333444444432 223999999999888765443
No 174
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.48 E-value=2e-12 Score=126.79 Aligned_cols=209 Identities=24% Similarity=0.243 Sum_probs=136.2
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh--hhchhH
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--YVGEGA 220 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~--~~g~~~ 220 (399)
++|.++++..+..++.. .+++||.||||||||++|+++|..++.+|++++|...... ..|...
T Consensus 26 ~~g~~~~~~~~l~a~~~---------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALLA---------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHHc---------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 77777777777666543 5689999999999999999999999999999999754322 122211
Q ss_pred HHHH------------HHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc------C-CCCCCCe
Q 015875 221 RMVR------------ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------G-FDARGNI 281 (399)
Q Consensus 221 ~~v~------------~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~-~~~~~~v 281 (399)
-... -+|.... +++++|||+.. ++.+|..|++++++.. . +.-...+
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f 155 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPPPF 155 (329)
T ss_pred HhhhhccCCeEEEecCCcccccc----eEEEEeccccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCC
Confidence 1110 1111111 49999999998 7899999999998732 2 2234567
Q ss_pred EEEEecC-----CCCCCCccccCCCCceeEEEecCC-CHHHHHHHHHHHHhcc------CCCCcccH-------------
Q 015875 282 KVLMATN-----RPDTLDPALLRPGRLDRKVEFGLP-DLESRTQIFKIHTRTM------NCERDIRF------------- 336 (399)
Q Consensus 282 ~vI~atn-----~~~~ld~al~r~gRf~~~i~~~~P-~~~er~~Il~~~~~~~------~~~~~~~~------------- 336 (399)
+||+|+| ....+++++++ ||...+.++.| +..+...++....... ...+-+..
T Consensus 156 ~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 233 (329)
T COG0714 156 IVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKV 233 (329)
T ss_pred EEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccC
Confidence 8888889 34678899999 99888999999 5544544444333211 00010110
Q ss_pred ----------HHHHHHC-------CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 337 ----------ELLARLC-------PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 337 ----------~~la~~~-------~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
..+...+ .|.+++....+...+...|...++..+..+|+......+.
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~ 297 (329)
T COG0714 234 PVSDEVIDYIVTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPAL 297 (329)
T ss_pred CchHHHHHHHHHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhh
Confidence 1111111 1234566666666676777777788888888776655553
No 175
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.45 E-value=2e-12 Score=133.66 Aligned_cols=196 Identities=18% Similarity=0.170 Sum_probs=127.3
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCc-eEEE---eccchhhhhhch---hHHHHHHHHHHHHcCCCEEEEEecCCccc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDAC-FIRV---IGSELVQKYVGE---GARMVRELFQMARSKKACIVFFDEVDAIG 247 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~-~i~v---~~s~l~~~~~g~---~~~~v~~~f~~a~~~~p~il~iDEiD~l~ 247 (399)
..+|||+|+||||||++|+++++..... |... ++..+....... +...++. ........++++|||+|.+
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~--G~l~~A~~Gil~iDEi~~l- 312 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEG--GALVLADNGVCCIDEFDKM- 312 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecC--ccEEecCCCEEEEechhhC-
Confidence 3479999999999999999999976432 2221 222221110000 0000000 0011233469999999999
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEecCCCC-------------CCCccccCCCCceeE
Q 015875 248 GARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD-------------TLDPALLRPGRLDRK 306 (399)
Q Consensus 248 ~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~~-------------~ld~al~r~gRf~~~ 306 (399)
+...|..|++.+++-. +. .-+.++.||+|+|+.. .|++++++ |||..
T Consensus 313 ----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi 380 (509)
T smart00350 313 ----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLL 380 (509)
T ss_pred ----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeE
Confidence 7788999999887521 11 1234688999999752 58999999 99886
Q ss_pred EEe-cCCCHHHHHHHHHHHHhccC-----------------------------CCCcccH---HHHH-----HH------
Q 015875 307 VEF-GLPDLESRTQIFKIHTRTMN-----------------------------CERDIRF---ELLA-----RL------ 342 (399)
Q Consensus 307 i~~-~~P~~~er~~Il~~~~~~~~-----------------------------~~~~~~~---~~la-----~~------ 342 (399)
+.+ ..|+.+...+|+++.+.... +.+.+.. +.+. .+
T Consensus 381 ~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~ 460 (509)
T smart00350 381 FVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQS 460 (509)
T ss_pred EEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccccc
Confidence 544 67898888888876432110 0011111 1111 11
Q ss_pred ----CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 015875 343 ----CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 343 ----~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~ 385 (399)
..+.|++.+..+++.|...|..+.+..|+.+|+..|++-+..+
T Consensus 461 ~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~s 507 (509)
T smart00350 461 EARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRES 507 (509)
T ss_pred ccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHHh
Confidence 1245789999999999999999999999999999999877543
No 176
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.45 E-value=7.1e-13 Score=119.66 Aligned_cols=188 Identities=16% Similarity=0.262 Sum_probs=126.3
Q ss_pred ccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-C----Cce
Q 015875 129 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-D----ACF 203 (399)
Q Consensus 129 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-~----~~~ 203 (399)
..|++++.|..++||+|.++.++++.-+... | .-.+++|.||||||||+.+.++|+++ | ..+
T Consensus 15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~v 81 (333)
T KOG0991|consen 15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAV 81 (333)
T ss_pred chHHHhhCchHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHh
Confidence 3489999999999999999999999888765 2 22379999999999999999999976 3 345
Q ss_pred EEEeccchhhhhhchhHHHHH---HHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC
Q 015875 204 IRVIGSELVQKYVGEGARMVR---ELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD 276 (399)
Q Consensus 204 i~v~~s~l~~~~~g~~~~~v~---~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~ 276 (399)
+.+|+|+-.+- ..+| ..|.+-+- +...||++||.|++ ....|.+|-+.++-..
T Consensus 82 LELNASdeRGI------DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----------T~gAQQAlRRtMEiyS--- 141 (333)
T KOG0991|consen 82 LELNASDERGI------DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----------TAGAQQALRRTMEIYS--- 141 (333)
T ss_pred hhccCcccccc------HHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----------hhHHHHHHHHHHHHHc---
Confidence 66776653321 2222 23333222 33459999999999 5566777877776532
Q ss_pred CCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHH
Q 015875 277 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVC 355 (399)
Q Consensus 277 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~ 355 (399)
...++..+||..+.+=..+.+ |+ ..+.|...+..+...-+....+...+. .+.-++.+.-..+| |+++.+
T Consensus 142 --~ttRFalaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQal 212 (333)
T KOG0991|consen 142 --NTTRFALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQAL 212 (333)
T ss_pred --ccchhhhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHH
Confidence 345688899998888777877 77 556666666666555444444333322 12235555555555 555555
Q ss_pred HHH
Q 015875 356 TEA 358 (399)
Q Consensus 356 ~~A 358 (399)
+..
T Consensus 213 NnL 215 (333)
T KOG0991|consen 213 NNL 215 (333)
T ss_pred HHH
Confidence 543
No 177
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.44 E-value=7.9e-12 Score=118.70 Aligned_cols=193 Identities=18% Similarity=0.269 Sum_probs=121.8
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCC-ceEE--E-ec----cchhhh---hhch-----h-HHHHHHH----HHHHHcC
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDA-CFIR--V-IG----SELVQK---YVGE-----G-ARMVREL----FQMARSK 233 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~-~~i~--v-~~----s~l~~~---~~g~-----~-~~~v~~~----f~~a~~~ 233 (399)
+..++|+||+|+|||++++.+++.+.. .+.. + ++ .++... ..|. . ....+.+ .......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 335899999999999999999998752 2221 1 11 111111 1111 0 1112222 2223456
Q ss_pred CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC--CCCCC----ccccCCCCceeEE
Q 015875 234 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR--PDTLD----PALLRPGRLDRKV 307 (399)
Q Consensus 234 ~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~--~~~ld----~al~r~gRf~~~i 307 (399)
.+.+|+|||+|.+ +......+..+.+... .....+.|+++... .+.+. ..+.+ |+...+
T Consensus 123 ~~~vliiDe~~~l-----------~~~~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 123 KRALLVVDEAQNL-----------TPELLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CCeEEEEECcccC-----------CHHHHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 6779999999998 3443343333322211 12223444444432 11111 23444 777889
Q ss_pred EecCCCHHHHHHHHHHHHhccCCC-----CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 015875 308 EFGLPDLESRTQIFKIHTRTMNCE-----RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 308 ~~~~P~~~er~~Il~~~~~~~~~~-----~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v 382 (399)
++++.+.++..+++...+...+.. .+...+.|...+.|.. +.|..+|..|...|..++...|+.+++..++..+
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999999999999999888765431 1234567788888864 5799999999999999999999999999999875
Q ss_pred H
Q 015875 383 I 383 (399)
Q Consensus 383 ~ 383 (399)
.
T Consensus 267 ~ 267 (269)
T TIGR03015 267 D 267 (269)
T ss_pred h
Confidence 4
No 178
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.4e-12 Score=133.57 Aligned_cols=205 Identities=23% Similarity=0.301 Sum_probs=151.1
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CCceE
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFI 204 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~~~i 204 (399)
...-.+|-++|.++.++++.+++.. +..++-+|.|+||+|||.++..+|.+. +..++
T Consensus 164 Ar~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~ 230 (786)
T COG0542 164 AREGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY 230 (786)
T ss_pred HhcCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE
Confidence 4455666799999999999999876 334478899999999999999999864 56788
Q ss_pred EEeccchhh--hhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeE
Q 015875 205 RVIGSELVQ--KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 282 (399)
Q Consensus 205 ~v~~s~l~~--~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 282 (399)
.++...+.. +|.|+++..++.+.+.+....+.||||||||.+.+.....+ + ..+..+.|...|. ++.+.
T Consensus 231 sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLA-------RGeL~ 301 (786)
T COG0542 231 SLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALA-------RGELR 301 (786)
T ss_pred EecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHh-------cCCeE
Confidence 888888875 78999999999999999988899999999999987643322 1 2445555555554 67889
Q ss_pred EEEecCCC-----CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCc-----ccHHHHHHHCCC-----Cc
Q 015875 283 VLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD-----IRFELLARLCPN-----ST 347 (399)
Q Consensus 283 vI~atn~~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~-----~~~~~la~~~~g-----~s 347 (399)
+|+||..- -.=|+||-| || ..|.+..|+.++-..||+-.-.++..... -.+...+.++.. +-
T Consensus 302 ~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~L 378 (786)
T COG0542 302 CIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFL 378 (786)
T ss_pred EEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCC
Confidence 99999642 234899999 99 88999999999999999876655433222 223333333332 33
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015875 348 GADIRSVCTEAGMFAIR 364 (399)
Q Consensus 348 g~di~~l~~~A~~~A~~ 364 (399)
|.-...++.+|+.....
T Consensus 379 PDKAIDLiDeA~a~~~l 395 (786)
T COG0542 379 PDKAIDLLDEAGARVRL 395 (786)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 33445666676655433
No 179
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.44 E-value=3.2e-12 Score=130.96 Aligned_cols=213 Identities=20% Similarity=0.254 Sum_probs=135.0
Q ss_pred CCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC----------------
Q 015875 137 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---------------- 200 (399)
Q Consensus 137 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~---------------- 200 (399)
...|+++.|++.+++.+.-.+. ...+++|.||||||||++++.++..+.
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~---------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAA---------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhcc---------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 3478999999998776655442 346899999999999999999997431
Q ss_pred ------------CceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHH
Q 015875 201 ------------ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI 268 (399)
Q Consensus 201 ------------~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 268 (399)
.||....++......+|.+.......+.. ...++|||||++.+ +...+..|.+.
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~l---A~~GvLfLDEi~e~-----------~~~~~~~L~~~ 318 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISL---AHNGVLFLDELPEF-----------KRSVLDALREP 318 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhc---cCCCeEecCChhhC-----------CHHHHHHHHHH
Confidence 12222222111111122111111112222 23469999999998 78899999998
Q ss_pred HHHhc----C----CCCCCCeEEEEecCCC-----C------------------CCCccccCCCCceeEEEecCCCHHHH
Q 015875 269 VNQLD----G----FDARGNIKVLMATNRP-----D------------------TLDPALLRPGRLDRKVEFGLPDLESR 317 (399)
Q Consensus 269 l~~l~----~----~~~~~~v~vI~atn~~-----~------------------~ld~al~r~gRf~~~i~~~~P~~~er 317 (399)
|+.-. . ..-..++.+|+++|.- . .+...|++ |||..+.++.++..+.
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKL 396 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHH
Confidence 87521 1 1113478999999862 1 47778888 9999999997654321
Q ss_pred -------------HHHHHHH------Hhcc---CCCCcccHHH--------------H--HHHCCCCcHHHHHHHHHHHH
Q 015875 318 -------------TQIFKIH------TRTM---NCERDIRFEL--------------L--ARLCPNSTGADIRSVCTEAG 359 (399)
Q Consensus 318 -------------~~Il~~~------~~~~---~~~~~~~~~~--------------l--a~~~~g~sg~di~~l~~~A~ 359 (399)
..+.+.+ ++.. .+...+.... + +....++|.|-...+++.|.
T Consensus 397 ~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvAr 476 (499)
T TIGR00368 397 LSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVAR 476 (499)
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 2222211 1111 1111111111 1 11224678999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHH
Q 015875 360 MFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 360 ~~A~~~~~~~It~ed~~~ai~ 380 (399)
..|-.+++..|+.+|+.+|+.
T Consensus 477 TiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 477 TIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHhhcCCCCCCHHHHHHHHh
Confidence 999999999999999999975
No 180
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=3.3e-12 Score=124.37 Aligned_cols=170 Identities=10% Similarity=0.168 Sum_probs=120.0
Q ss_pred ccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc--------eEEEeccc
Q 015875 139 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------FIRVIGSE 210 (399)
Q Consensus 139 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~--------~i~v~~s~ 210 (399)
+|++|+|++.+++.+...+.. -..+..+||+||+|+|||++|+++|+.+-+. +..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-
Confidence 588999999999999999864 1345678999999999999999999976432 2222211
Q ss_pred hhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 015875 211 LVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 286 (399)
Q Consensus 211 l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~a 286 (399)
.+.. -.-..++++.+.+. .....|++||++|.+ +.+.++.|+..|++ +..++.+|.+
T Consensus 69 -~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEe-----pp~~t~~il~ 129 (313)
T PRK05564 69 -NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEE-----PPKGVFIILL 129 (313)
T ss_pred -cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCCCeEEEEE
Confidence 0111 12234555555332 244569999999999 67778888888774 4566777778
Q ss_pred cCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCC
Q 015875 287 TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS 346 (399)
Q Consensus 287 tn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~ 346 (399)
|+.++.+.+.+++ |+ ..++|+.|+.++....+...... .. ....+.++..+.|.
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g~ 183 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDGI 183 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCCC
Confidence 7888999999999 88 79999999999988877665432 11 22244556666553
No 181
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.43 E-value=2e-12 Score=114.46 Aligned_cols=123 Identities=24% Similarity=0.417 Sum_probs=83.8
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhh----
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY---- 215 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~---- 215 (399)
|+|.+..++++.+.+.... ..+.+|||+|++||||+++|++|++.. +.||+.++|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 5788889998888887532 346789999999999999999999965 5799999998764321
Q ss_pred -hchhH-------HHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CCCC----CCCe
Q 015875 216 -VGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFDA----RGNI 281 (399)
Q Consensus 216 -~g~~~-------~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~~----~~~v 281 (399)
.|... .....+|+.|.. ++||||||+.| +...|..|+++|+.-. .... ..++
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccc---eEEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccc
Confidence 12110 001134554443 49999999999 8999999999998632 1111 2379
Q ss_pred EEEEecCCC
Q 015875 282 KVLMATNRP 290 (399)
Q Consensus 282 ~vI~atn~~ 290 (399)
++|++|+.+
T Consensus 136 RiI~st~~~ 144 (168)
T PF00158_consen 136 RIIASTSKD 144 (168)
T ss_dssp EEEEEESS-
T ss_pred eEEeecCcC
Confidence 999999864
No 182
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.42 E-value=1.9e-12 Score=125.07 Aligned_cols=103 Identities=23% Similarity=0.284 Sum_probs=65.2
Q ss_pred CEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC------------CCCCCccccCCCC
Q 015875 235 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR------------PDTLDPALLRPGR 302 (399)
Q Consensus 235 p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~------------~~~ld~al~r~gR 302 (399)
|+||||||+|.| +-+....|.+.++. .-.-+||+|||+ |..++..|+. |
T Consensus 279 pGVLFIDEvHmL-----------DiEcFsfLnralEs------~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHML-----------DIECFSFLNRALES------ELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGS-----------BHHHHHHHHHHHTS------TT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhc-----------cHHHHHHHHHHhcC------CCCcEEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 789999999999 88888877777762 233458889985 4677788888 8
Q ss_pred ceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHH
Q 015875 303 LDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTE 357 (399)
Q Consensus 303 f~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~ 357 (399)
+ ..|...+++.++..+|++.+++..++. .+-.++.|+......|-+...+++.-
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~ 394 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITP 394 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHH
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhh
Confidence 8 789999999999999999999887664 22234555544444444444444443
No 183
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.42 E-value=9.9e-12 Score=115.66 Aligned_cols=131 Identities=24% Similarity=0.295 Sum_probs=98.3
Q ss_pred CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC-------------CCCCCccccCC
Q 015875 234 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-------------PDTLDPALLRP 300 (399)
Q Consensus 234 ~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~-------------~~~ld~al~r~ 300 (399)
-|++|||||++.+ +-+....|.+.|+ +.-.-+||+|||+ |..+++.++.
T Consensus 296 vPGVLFIDEVhML-----------DiEcFTyL~kalE------S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----------DIECFTYLHKALE------SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred cCcceEeeehhhh-----------hhHHHHHHHHHhc------CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 3789999999998 6777666666554 2333458888885 4566677776
Q ss_pred CCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 301 GRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 301 gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
|+ ..|..-+++.++.++|+++..+..++. .+..+..++......|-+...+++.-|...|...++..|..+|++++-
T Consensus 358 -Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 358 -RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred -he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 66 566777788999999999998876664 333466677766666778888888888999999999999999999886
Q ss_pred HHHHh
Q 015875 380 NKVIK 384 (399)
Q Consensus 380 ~~v~~ 384 (399)
.-+..
T Consensus 436 ~Lf~D 440 (456)
T KOG1942|consen 436 ELFLD 440 (456)
T ss_pred HHHHh
Confidence 66543
No 184
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.42 E-value=5.5e-12 Score=132.00 Aligned_cols=209 Identities=15% Similarity=0.171 Sum_probs=126.8
Q ss_pred cccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEE-E
Q 015875 128 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR-V 206 (399)
Q Consensus 128 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~-v 206 (399)
..+|.+.+.|.++++++|+++.+++++.++.... ++..+.+.++|+||||||||++++.+|+.++..++. .
T Consensus 71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~ 142 (637)
T TIGR00602 71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS 142 (637)
T ss_pred cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh
Confidence 3578999999999999999999999999986521 123444569999999999999999999988765433 1
Q ss_pred e---ccchh----------hhh--hchhHHHHHHHHHHHH----------cCCCEEEEEecCCcccCCccCCCCCCChHH
Q 015875 207 I---GSELV----------QKY--VGEGARMVRELFQMAR----------SKKACIVFFDEVDAIGGARFDDGVGGDNEV 261 (399)
Q Consensus 207 ~---~s~l~----------~~~--~g~~~~~v~~~f~~a~----------~~~p~il~iDEiD~l~~~r~~~~~~~~~~~ 261 (399)
+ +.... ..+ .......++.++..+. .....|||||||+.+... ....
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~~ 214 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTRA 214 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHHH
Confidence 1 11000 000 0112233344444443 134569999999987532 2223
Q ss_pred HHHHHH-HHHHhcCCCCCCCeEEEEecCC-CC--------------CCCccccCCCCceeEEEecCCCHHHHHHHHHHHH
Q 015875 262 QRTMLE-IVNQLDGFDARGNIKVLMATNR-PD--------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 325 (399)
Q Consensus 262 ~~~l~~-ll~~l~~~~~~~~v~vI~atn~-~~--------------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~ 325 (399)
++.+++ ... ..+.+.+|++++. +. .|.+++++..|+ .+|.|.+.+.....+.|+..+
T Consensus 215 lq~lLr~~~~------e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl 287 (637)
T TIGR00602 215 LHEILRWKYV------SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIV 287 (637)
T ss_pred HHHHHHHHhh------cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHH
Confidence 333333 211 1334445554431 21 133677653355 589999999999777777666
Q ss_pred hccCC--CCc------ccHHHHHHHCCCCcHHHHHHHHHHHHHHHH
Q 015875 326 RTMNC--ERD------IRFELLARLCPNSTGADIRSVCTEAGMFAI 363 (399)
Q Consensus 326 ~~~~~--~~~------~~~~~la~~~~g~sg~di~~l~~~A~~~A~ 363 (399)
..... ..+ ..+..|+... .+|+|.+++.....+.
T Consensus 288 ~~E~~~~~~~~~~p~~~~l~~I~~~s----~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 288 TIEAKKNGEKIKVPKKTSVELLCQGC----SGDIRSAINSLQFSSS 329 (637)
T ss_pred HhhhhccccccccCCHHHHHHHHHhC----CChHHHHHHHHHHHHh
Confidence 54321 111 1344555544 3499988877766644
No 185
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=6e-12 Score=122.19 Aligned_cols=183 Identities=16% Similarity=0.214 Sum_probs=126.3
Q ss_pred ccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCce----------EEEec
Q 015875 139 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF----------IRVIG 208 (399)
Q Consensus 139 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~----------i~v~~ 208 (399)
.|++|+|++.+++.+++.+.. | +-+..+||+||+|+||+++|.++|+.+-+.- ...+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 478999999999999999975 1 3456899999999999999999999763221 01111
Q ss_pred cchh---------hh--------hhc--------hhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCCh
Q 015875 209 SELV---------QK--------YVG--------EGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDN 259 (399)
Q Consensus 209 s~l~---------~~--------~~g--------~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~ 259 (399)
+++. ++ ..| -.-..++++.+.+. .....|++||++|.+ +.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 1111 00 000 01123455554443 245579999999999 67
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHH
Q 015875 260 EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELL 339 (399)
Q Consensus 260 ~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~l 339 (399)
..++.|+..|++ +. +.++|..|+.++.|-|.+++ |+ ..+.|++|+.++..++|........ .+.+...+
T Consensus 139 ~aaNaLLK~LEE-----Pp-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l 207 (314)
T PRK07399 139 AAANALLKTLEE-----PG-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPEL 207 (314)
T ss_pred HHHHHHHHHHhC-----CC-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHH
Confidence 788899988886 23 55677888889999999999 88 8999999999999998887643211 11224677
Q ss_pred HHHCCCCcHHHHHHHHH
Q 015875 340 ARLCPNSTGADIRSVCT 356 (399)
Q Consensus 340 a~~~~g~sg~di~~l~~ 356 (399)
+....| +++....+++
T Consensus 208 ~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 208 LALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHcCC-CHHHHHHHHH
Confidence 777766 4445444443
No 186
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.40 E-value=6.7e-12 Score=122.22 Aligned_cols=149 Identities=23% Similarity=0.351 Sum_probs=108.7
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC---------------------
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD--------------------- 200 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~--------------------- 200 (399)
++.|.+++..++..++.... ..|..+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 47788888888888776311 2344699999999999999999999875
Q ss_pred ---CceEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc
Q 015875 201 ---ACFIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 273 (399)
Q Consensus 201 ---~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~ 273 (399)
..++.++.++..... .....++.+-+.... ...-|++|||+|.| +...++.++..+++
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-----------t~~A~nallk~lEe-- 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-----------TEDAANALLKTLEE-- 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhcc--
Confidence 356677766554321 123344544444332 34569999999999 67788888888874
Q ss_pred CCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHH
Q 015875 274 GFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK 322 (399)
Q Consensus 274 ~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~ 322 (399)
+..+..+|++||.+..+-+.+++ |+ ..+.|++|+...+....+
T Consensus 136 ---p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 ---PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ---CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 56788899999999999999999 88 788898866555544333
No 187
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.39 E-value=1.1e-11 Score=129.95 Aligned_cols=196 Identities=19% Similarity=0.193 Sum_probs=131.6
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcC--CceEEEeccchhhhhhchhH--HHHH-H--HHH--HHHcCCCEEEEEecCCcc
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQKYVGEGA--RMVR-E--LFQ--MARSKKACIVFFDEVDAI 246 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~--~~~i~v~~s~l~~~~~g~~~--~~v~-~--~f~--~a~~~~p~il~iDEiD~l 246 (399)
.+|||.|+||||||++|+++++.+. .+|+++..........|... ..+. . .|+ .......++||+|||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 4799999999999999999999875 36888875333333333310 0000 0 000 001123359999999999
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhc------CCC--CCCCeEEEEecCCCC---CCCccccCCCCceeEEEecC-CCH
Q 015875 247 GGARFDDGVGGDNEVQRTMLEIVNQLD------GFD--ARGNIKVLMATNRPD---TLDPALLRPGRLDRKVEFGL-PDL 314 (399)
Q Consensus 247 ~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~~--~~~~v~vI~atn~~~---~ld~al~r~gRf~~~i~~~~-P~~ 314 (399)
+...|..|++++++-. +.. ...++.||+|+|..+ .+.++++. ||...+.+.. |+.
T Consensus 97 -----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 -----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQ 163 (589)
T ss_pred -----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCH
Confidence 8899999999987532 211 124688999888765 68889998 9988777765 688
Q ss_pred HHHHHHHHHHHhccC-------------------CCC-----cccHHHHHHHC--CCCc-HHHHHHHHHHHHHHHHHHcC
Q 015875 315 ESRTQIFKIHTRTMN-------------------CER-----DIRFELLARLC--PNST-GADIRSVCTEAGMFAIRARR 367 (399)
Q Consensus 315 ~er~~Il~~~~~~~~-------------------~~~-----~~~~~~la~~~--~g~s-g~di~~l~~~A~~~A~~~~~ 367 (399)
++|.+|++....... ... +...+.++..+ .|.+ .+.-..+++.|...|..+++
T Consensus 164 ~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr 243 (589)
T TIGR02031 164 DLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGR 243 (589)
T ss_pred HHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCC
Confidence 889998877542110 001 11122333222 2333 45555778888899999999
Q ss_pred CCccHHHHHHHHHHHHh
Q 015875 368 KTVTEKDFLDAVNKVIK 384 (399)
Q Consensus 368 ~~It~ed~~~ai~~v~~ 384 (399)
..|+.+|+..|+.-|..
T Consensus 244 ~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 244 TEVTEEDLKLAVELVLL 260 (589)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999999874
No 188
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.38 E-value=9e-12 Score=112.26 Aligned_cols=144 Identities=22% Similarity=0.279 Sum_probs=99.3
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCc------------------------eEEEeccchhhhhhchhHHHHHHHHH
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDAC------------------------FIRVIGSELVQKYVGEGARMVRELFQ 228 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~------------------------~i~v~~s~l~~~~~g~~~~~v~~~f~ 228 (399)
+.+..+|||||+|+|||++|+.+++.+.+. +..+.... . .-+...++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence 345679999999999999999999986432 11111110 0 012244555555
Q ss_pred HHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCce
Q 015875 229 MARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLD 304 (399)
Q Consensus 229 ~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~ 304 (399)
.+.. ....|++|||+|.+ +.+.++.|+..+++ ...++.+|++|+.+..+.+++++ |+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l-----------~~~~~~~Ll~~le~-----~~~~~~~il~~~~~~~l~~~i~s--r~- 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERM-----------NEAAANALLKTLEE-----PPPNTLFILITPSPEKLLPTIRS--RC- 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChHhChHHHHh--hc-
Confidence 5443 44569999999999 55667777766653 23456677778888899999998 87
Q ss_pred eEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCC
Q 015875 305 RKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPN 345 (399)
Q Consensus 305 ~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g 345 (399)
..++|++|+.++..+++... ++. ...++.++..+.|
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 68999999999998888776 232 2335666666655
No 189
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.37 E-value=2.6e-11 Score=113.24 Aligned_cols=132 Identities=20% Similarity=0.244 Sum_probs=102.2
Q ss_pred CEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC------------CCCCCccccCCCC
Q 015875 235 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR------------PDTLDPALLRPGR 302 (399)
Q Consensus 235 p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~------------~~~ld~al~r~gR 302 (399)
|+||||||+|.| +-+....|.+.++. .-..++|++||+ |..++-.++. |
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~------d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEN------DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhh------ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 779999999988 77777777777653 122357777775 5667777777 7
Q ss_pred ceeEEEecCCCHHHHHHHHHHHHhccCCCC-cccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 015875 303 LDRKVEFGLPDLESRTQIFKIHTRTMNCER-DIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNK 381 (399)
Q Consensus 303 f~~~i~~~~P~~~er~~Il~~~~~~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~ 381 (399)
+ ..|...+++.++...||++.+....+.- +..+..|.......+-+....++..|.+.|.++....+..+|+.+++.-
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRL 428 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHH
Confidence 6 6788888999999999999998766542 2234556666666677888899999999999999999999999999988
Q ss_pred HHhhc
Q 015875 382 VIKGY 386 (399)
Q Consensus 382 v~~~~ 386 (399)
+....
T Consensus 429 FlD~~ 433 (454)
T KOG2680|consen 429 FLDEK 433 (454)
T ss_pred Hhhhh
Confidence 76544
No 190
>PRK15115 response regulator GlrR; Provisional
Probab=99.36 E-value=1.8e-11 Score=124.76 Aligned_cols=207 Identities=20% Similarity=0.301 Sum_probs=135.0
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhch
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE 218 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~ 218 (399)
.++|.+..+.++.+.+... ......++|+|++|||||++|+++++.. +.+|+.++|..+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~-- 201 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMV-----------AQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL-- 201 (444)
T ss_pred cccccCHHHHHHHHHHHhh-----------ccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH--
Confidence 4677777777666655431 1234579999999999999999999864 57999999987633211
Q ss_pred hHHHHHHHHHH---------------HHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CCCC----
Q 015875 219 GARMVRELFQM---------------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFDA---- 277 (399)
Q Consensus 219 ~~~~v~~~f~~---------------a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~~---- 277 (399)
-..+|.. ......++|||||||.| +...|..|+.+++.-. ....
T Consensus 202 ----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~ 266 (444)
T PRK15115 202 ----ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDI 266 (444)
T ss_pred ----HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCcee
Confidence 1122221 11234569999999999 8899999999987632 1111
Q ss_pred CCCeEEEEecCCC--C-----CCCccccCCCCceeEEEecCCCHHHHHH----HHHHHHhcc----CC-CCcccHHHHHH
Q 015875 278 RGNIKVLMATNRP--D-----TLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRTM----NC-ERDIRFELLAR 341 (399)
Q Consensus 278 ~~~v~vI~atn~~--~-----~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~~----~~-~~~~~~~~la~ 341 (399)
..++.+|++|+.. . .+.+.+.. |+ ..+.+..|++.+|.+ +++.+++.. +. ...++.+.+..
T Consensus 267 ~~~~rii~~~~~~l~~~~~~~~f~~~l~~--~l-~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 343 (444)
T PRK15115 267 DIDVRIISATHRDLPKAMARGEFREDLYY--RL-NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKR 343 (444)
T ss_pred eeeEEEEEeCCCCHHHHHHcCCccHHHHH--hh-ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 2368899999863 1 12222222 22 267888899999976 444444332 21 13467777877
Q ss_pred HCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 342 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 342 ~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
+...-||++++++-+.....+.......|+.+++...+
T Consensus 344 L~~~~WpgNvreL~~~i~~~~~~~~~~~i~~~~l~~~~ 381 (444)
T PRK15115 344 LMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQAL 381 (444)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhCCCCccChhhhhhhh
Confidence 77777777777766666555555566778888875443
No 191
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.36 E-value=6.3e-11 Score=107.67 Aligned_cols=168 Identities=20% Similarity=0.276 Sum_probs=121.6
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEecc
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 209 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s 209 (399)
...+++...+|+|.+.+++.|.+.-+.+... .|..+|||||..|||||+|+||+.++. +..++.|+..
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G---------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAEG---------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHcC---------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 3456688889999999999998777654332 567789999999999999999999976 5678888877
Q ss_pred chhhhhhchhHHHHHHHHHHHHc-CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC--CCCCCeEEEEe
Q 015875 210 ELVQKYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF--DARGNIKVLMA 286 (399)
Q Consensus 210 ~l~~~~~g~~~~~v~~~f~~a~~-~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~--~~~~~v~vI~a 286 (399)
++.. +-.+++..+. ...-|||+|++--= .+......|..+|+ |- ....||++-+|
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe----------~gd~~yK~LKs~Le---G~ve~rP~NVl~YAT 180 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLSFE----------EGDDAYKALKSALE---GGVEGRPANVLFYAT 180 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCCCC----------CCchHHHHHHHHhc---CCcccCCCeEEEEEe
Confidence 7643 3345555544 33469999986321 12333445554443 32 23568999999
Q ss_pred cCCCCCCCc--------------------cccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC
Q 015875 287 TNRPDTLDP--------------------ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE 331 (399)
Q Consensus 287 tn~~~~ld~--------------------al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~ 331 (399)
+|+...|+. .+--++||...+.|++++.++...|+..+++..++.
T Consensus 181 SNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 181 SNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred cCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 998544431 122246999999999999999999999999988875
No 192
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.36 E-value=2.7e-12 Score=131.54 Aligned_cols=215 Identities=18% Similarity=0.246 Sum_probs=137.0
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhh-
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV- 216 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~- 216 (399)
..++|.+..++++.+.+... ......+++.|++||||+++|++++... +.+|+.++|..+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred cceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 45889988888887777541 1335579999999999999999999864 57999999987633211
Q ss_pred ----ch----hHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcC--CC----CCCCeE
Q 015875 217 ----GE----GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--FD----ARGNIK 282 (399)
Q Consensus 217 ----g~----~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~~----~~~~v~ 282 (399)
|. .................++||||||+.+ +.+.|..|+++++.-.. .. ...++.
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~r 271 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTPIKVDVR 271 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCceeeeeeE
Confidence 11 0000000001112334679999999999 78899999999875321 11 123678
Q ss_pred EEEecCCC--C-----CCCccccCCCCceeEEEecCCCHHHHHH----HHHHHHhcc----CCC-CcccHHHHHHHCCCC
Q 015875 283 VLMATNRP--D-----TLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRTM----NCE-RDIRFELLARLCPNS 346 (399)
Q Consensus 283 vI~atn~~--~-----~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~~----~~~-~~~~~~~la~~~~g~ 346 (399)
+|++|+.. . .+.+.|+. |+ ..+.+..|++++|.+ ++..++... +.. ..++.+.+..+...-
T Consensus 272 ii~~~~~~l~~~~~~~~f~~~L~~--rl-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 348 (463)
T TIGR01818 272 IVAATHQNLEALVRQGKFREDLFH--RL-NVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLR 348 (463)
T ss_pred EEEeCCCCHHHHHHcCCcHHHHHH--Hh-CcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 99999764 1 22233333 33 246777777776665 444444332 221 356777777777767
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 015875 347 TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 347 sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~ 380 (399)
|+++++.+-+.+...+.......|+.+|+...+.
T Consensus 349 wpgNvreL~~~~~~~~~~~~~~~i~~~~l~~~~~ 382 (463)
T TIGR01818 349 WPGNVRQLENLCRWLTVMASGDEVLVSDLPAELA 382 (463)
T ss_pred CCChHHHHHHHHHHHHHhCCCCcccHHhchHHHh
Confidence 7756666555555555555677899999876553
No 193
>PRK04132 replication factor C small subunit; Provisional
Probab=99.36 E-value=2.4e-11 Score=130.28 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=113.3
Q ss_pred CCceeEeC--CCCCcHHHHHHHHHHhc-----CCceEEEeccchhhhhhchhHHHHHHHHHHHHcC------CCEEEEEe
Q 015875 175 PKGVLCYG--PPGTGKTLLARAVANRT-----DACFIRVIGSELVQKYVGEGARMVRELFQMARSK------KACIVFFD 241 (399)
Q Consensus 175 ~~~vLL~G--ppGtGKT~larala~~~-----~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~------~p~il~iD 241 (399)
.-+-+..| |++.|||++|+++|+++ +..++.+|+++..+ -..++.+...+... ...|+|||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 33567778 99999999999999987 56799999987532 12445444433211 23699999
Q ss_pred cCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHH
Q 015875 242 EVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIF 321 (399)
Q Consensus 242 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il 321 (399)
|+|.| +...|+.|+.++++ ...++.+|++||.+..+.+++++ || ..+.|++|+.++....+
T Consensus 638 EaD~L-----------t~~AQnALLk~lEe-----p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 638 EADAL-----------TQDAQQALRRTMEM-----FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred CcccC-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHH
Confidence 99999 67889999998885 35678899999999999999999 88 89999999999999888
Q ss_pred HHHHhccCCC-CcccHHHHHHHCCC
Q 015875 322 KIHTRTMNCE-RDIRFELLARLCPN 345 (399)
Q Consensus 322 ~~~~~~~~~~-~~~~~~~la~~~~g 345 (399)
+..+.+.++. ++..+..++..+.|
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 8777655543 33456777877777
No 194
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.35 E-value=4.6e-11 Score=113.40 Aligned_cols=211 Identities=17% Similarity=0.195 Sum_probs=135.6
Q ss_pred ccCcHHHHHH---HHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---------CCceEEEeccc
Q 015875 143 VGGCKEQIEK---MREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSE 210 (399)
Q Consensus 143 i~G~~~~~~~---l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---------~~~~i~v~~s~ 210 (399)
-+|...+.+. |.+.+..|-. ....++||+|++|.|||++++.++... ..|++.+.++.
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~----------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKR----------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcc----------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 4566655544 4444444322 234579999999999999999999743 24677776533
Q ss_pred hhh------h---hhc-------hhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcC
Q 015875 211 LVQ------K---YVG-------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG 274 (399)
Q Consensus 211 l~~------~---~~g-------~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~ 274 (399)
-.+ . ..| .....-..+....+...+.+|+||||+.++.. +..-|+.++.+|..+.
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG--------s~~~qr~~Ln~LK~L~- 176 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG--------SYRKQREFLNALKFLG- 176 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc--------cHHHHHHHHHHHHHHh-
Confidence 111 1 011 11223334455566777889999999997542 4555777777777663
Q ss_pred CCCCCCeEEEEecCC--C--CCCCccccCCCCceeEEEecCC-CHHHHHHHHHHHHhccCCC--CcccH----HHHHHHC
Q 015875 275 FDARGNIKVLMATNR--P--DTLDPALLRPGRLDRKVEFGLP-DLESRTQIFKIHTRTMNCE--RDIRF----ELLARLC 343 (399)
Q Consensus 275 ~~~~~~v~vI~atn~--~--~~ld~al~r~gRf~~~i~~~~P-~~~er~~Il~~~~~~~~~~--~~~~~----~~la~~~ 343 (399)
+.-++.+|+.... . -.-|+.+-+ || ..+.+|.- .-++...++..+-..+++. ..+.. ..|-..+
T Consensus 177 --NeL~ipiV~vGt~~A~~al~~D~QLa~--RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s 251 (302)
T PF05621_consen 177 --NELQIPIVGVGTREAYRALRTDPQLAS--RF-EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERS 251 (302)
T ss_pred --hccCCCeEEeccHHHHHHhccCHHHHh--cc-CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHc
Confidence 2334444443321 1 233677777 99 55666652 3345566777777766653 22332 4556778
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Q 015875 344 PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDA 378 (399)
Q Consensus 344 ~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~a 378 (399)
.|..| ++..+++.|+..|++.+...||.+.+...
T Consensus 252 ~G~iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 252 EGLIG-ELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred CCchH-HHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 88776 99999999999999999999999998763
No 195
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.33 E-value=1.2e-12 Score=111.98 Aligned_cols=112 Identities=31% Similarity=0.422 Sum_probs=74.8
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh--hhchhHHH-------HHHHHHHHHcCCCEEEEEecCCccc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--YVGEGARM-------VRELFQMARSKKACIVFFDEVDAIG 247 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~--~~g~~~~~-------v~~~f~~a~~~~p~il~iDEiD~l~ 247 (399)
+|+|+||||||||++|+.+|+.++.+++.++++..... ..|...-. -..+...+ ..+++++||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccC-
Confidence 48999999999999999999999999999988664321 11110000 00000000 15679999999998
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHhcCC-------C-CCC------CeEEEEecCCCC----CCCccccCCCCc
Q 015875 248 GARFDDGVGGDNEVQRTMLEIVNQLDGF-------D-ARG------NIKVLMATNRPD----TLDPALLRPGRL 303 (399)
Q Consensus 248 ~~r~~~~~~~~~~~~~~l~~ll~~l~~~-------~-~~~------~v~vI~atn~~~----~ld~al~r~gRf 303 (399)
+++++..|+.+++.-... . ... ++.+|+|+|... .+++++++ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 788899999988752111 0 111 489999999987 89999999 87
No 196
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=3.5e-11 Score=117.49 Aligned_cols=151 Identities=21% Similarity=0.261 Sum_probs=105.2
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCc------------------------eEEEeccchhhhhhchhHHHHHHHHH
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDAC------------------------FIRVIGSELVQKYVGEGARMVRELFQ 228 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~------------------------~i~v~~s~l~~~~~g~~~~~v~~~f~ 228 (399)
+.+..+||+||+|+|||++|+++|+.+.+. ++.+...+- ++ .-+-..+|++.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 446689999999999999999999977442 111211000 00 012344555555
Q ss_pred HHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCce
Q 015875 229 MAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLD 304 (399)
Q Consensus 229 ~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~ 304 (399)
.+. .....|++||++|.| +.+.++.|+..|++ +..++.+|.+|+.++.+.|.+++ |+
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE-----Pp~~~~fiL~t~~~~~ll~TI~S--Rc- 157 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE-----PSGDTVLLLISHQPSRLLPTIKS--RC- 157 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChhhCcHHHHh--hc-
Confidence 443 344569999999999 78889999988885 45688899999999999999999 99
Q ss_pred eEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcH
Q 015875 305 RKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG 348 (399)
Q Consensus 305 ~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg 348 (399)
..+.|++|+.++..+.+...... ........++..+.|..+
T Consensus 158 ~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 158 QQQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPL 198 (328)
T ss_pred eeeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHH
Confidence 67999999999988887765321 112223455566666433
No 197
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.31 E-value=3.9e-11 Score=125.95 Aligned_cols=134 Identities=18% Similarity=0.258 Sum_probs=90.5
Q ss_pred CEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc----CC------------CCCCCeEEEEecCCC--CCCCcc
Q 015875 235 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GF------------DARGNIKVLMATNRP--DTLDPA 296 (399)
Q Consensus 235 p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~~------------~~~~~v~vI~atn~~--~~ld~a 296 (399)
.++|||||++.| +...|..|+++|+.-. +. .-..+++||+++|+. ..++|+
T Consensus 227 GGtL~LDei~~L-----------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpd 295 (637)
T PRK13765 227 KGVLFIDEINTL-----------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPA 295 (637)
T ss_pred CcEEEEeChHhC-----------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHH
Confidence 358999999998 6788999999986522 10 011267899999884 567899
Q ss_pred ccCCCCce---eEEEecC--C-CHHHHHHHHHHHHhccC---CCCcccHHHHHHHCC------C------CcHHHHHHHH
Q 015875 297 LLRPGRLD---RKVEFGL--P-DLESRTQIFKIHTRTMN---CERDIRFELLARLCP------N------STGADIRSVC 355 (399)
Q Consensus 297 l~r~gRf~---~~i~~~~--P-~~~er~~Il~~~~~~~~---~~~~~~~~~la~~~~------g------~sg~di~~l~ 355 (399)
|+. ||. ..+.|.. + +.+.+..+++...+... ....++.+.++.+.. | ..-+++..++
T Consensus 296 L~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~ 373 (637)
T PRK13765 296 LRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLV 373 (637)
T ss_pred HHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHH
Confidence 988 775 4555553 2 35566666664444332 123444443332221 1 2358999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHH
Q 015875 356 TEAGMFAIRARRKTVTEKDFLDAVNK 381 (399)
Q Consensus 356 ~~A~~~A~~~~~~~It~ed~~~ai~~ 381 (399)
++|...|...++..|+.+|+.+|+..
T Consensus 374 r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 374 RVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHHHHHHHhhccceecHHHHHHHHHh
Confidence 99999999999999999999888753
No 198
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=2.3e-11 Score=119.13 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=109.1
Q ss_pred ccccccC-cHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc---------------
Q 015875 139 TYNDVGG-CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------------- 202 (399)
Q Consensus 139 ~~~~i~G-~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~--------------- 202 (399)
.|+.|.| ++.+++.|+..+.. -+.|..+||+||+|+||+++|+++|+.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4677777 99999999999864 2456678999999999999999999976332
Q ss_pred ---------eEEEeccchhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHH
Q 015875 203 ---------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 269 (399)
Q Consensus 203 ---------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 269 (399)
+..+... +.. -.-..++++.+.+. .....|++|||+|.+ +.+.++.|+..|
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHh
Confidence 1111110 000 11234455544433 234569999999999 677888888888
Q ss_pred HHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHH
Q 015875 270 NQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 323 (399)
Q Consensus 270 ~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~ 323 (399)
++ +..++.+|.+|+.+..+.|++++ |+ ..++|++|+.++..+.++.
T Consensus 135 EE-----Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 EE-----PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cC-----CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 75 45677888888888999999999 88 8999999999988777753
No 199
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.30 E-value=2.6e-11 Score=101.63 Aligned_cols=126 Identities=29% Similarity=0.439 Sum_probs=82.2
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCc---eEEEeccchhhhh--------------hchhHHHHHHHHHHHHcCCCEE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVIGSELVQKY--------------VGEGARMVRELFQMARSKKACI 237 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~---~i~v~~s~l~~~~--------------~g~~~~~v~~~f~~a~~~~p~i 237 (399)
+..++|+||||||||++++.+|..+... ++.++++...... ........+.++..++...+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999988765 7888776644321 2234556677888888877889
Q ss_pred EEEecCCcccCCccCCCCCCChHHHHHHHHH--HHHhcCCCCCCCeEEEEecCC-CCCCCccccCCCCceeEEEecCC
Q 015875 238 VFFDEVDAIGGARFDDGVGGDNEVQRTMLEI--VNQLDGFDARGNIKVLMATNR-PDTLDPALLRPGRLDRKVEFGLP 312 (399)
Q Consensus 238 l~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l--l~~l~~~~~~~~v~vI~atn~-~~~ld~al~r~gRf~~~i~~~~P 312 (399)
|++||++.+.... ........ ...........+..+|+++|. ....+..+.+ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999995421 11111110 000001122456778899886 3334444444 78777777654
No 200
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.28 E-value=9.5e-12 Score=110.40 Aligned_cols=115 Identities=25% Similarity=0.292 Sum_probs=72.7
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCC----ceEEEeccchhhhhhchhHHHHHHHHHHH----HcCCCEEEEEecCCc
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDA----CFIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDA 245 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~----~~i~v~~s~l~~~~~g~~~~~v~~~f~~a----~~~~p~il~iDEiD~ 245 (399)
|-..+||.||+|||||.+|+++|..+.. +++.++++++... ++....+..++..+ ......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3447999999999999999999999985 9999999998761 11111111111111 111123999999999
Q ss_pred ccCCccCCCCCCChHHHHHHHHHHHHhcCC------CCCCCeEEEEecCCC
Q 015875 246 IGGARFDDGVGGDNEVQRTMLEIVNQLDGF------DARGNIKVLMATNRP 290 (399)
Q Consensus 246 l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~------~~~~~v~vI~atn~~ 290 (399)
+....+.........+|+.|+++++.-.-. -+..++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 933210000001128899999999863211 123578999999864
No 201
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.28 E-value=2.7e-12 Score=130.83 Aligned_cols=192 Identities=21% Similarity=0.291 Sum_probs=130.6
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc--CCceEEEeccch---------hhhhhchhHHH----HHHHHHHHHcCCCEEE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT--DACFIRVIGSEL---------VQKYVGEGARM----VRELFQMARSKKACIV 238 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~--~~~~i~v~~s~l---------~~~~~g~~~~~----v~~~f~~a~~~~p~il 238 (399)
..-.+|+.|.|||||..+||++++.. ..||+.+||..+ ++...|.+... .+..++. ...+.+
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~---A~gGtl 411 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQ---ADGGTL 411 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhcccccccee---cCCCcc
Confidence 34579999999999999999999865 568999999544 33323333222 1222222 334599
Q ss_pred EEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc-----CCCCCCCeEEEEecCCC--CCCCccccCCCCcee--EEEe
Q 015875 239 FFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-----GFDARGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEF 309 (399)
Q Consensus 239 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-----~~~~~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~ 309 (399)
|+|||..| +.+.|..|+++|++-. +-...-+|.||+||++. ..+....+|.+.+++ ...+
T Consensus 412 FldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i 480 (606)
T COG3284 412 FLDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVI 480 (606)
T ss_pred HHHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeee
Confidence 99999999 7899999999999832 22223368999999885 333444444444444 6677
Q ss_pred cCCCHHHHHH---HHH-HHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 310 GLPDLESRTQ---IFK-IHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 310 ~~P~~~er~~---Il~-~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
.+|++++|.+ .|. .+.+.....-.++-+.++.+...-||++++++-+.....++......|...|+...+
T Consensus 481 ~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~~dlp~~l 554 (606)
T COG3284 481 TLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRVSDLPPEL 554 (606)
T ss_pred ccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeEcccCCHHH
Confidence 7888888887 333 333333333456778888888888888888888777777777776666655554443
No 202
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.28 E-value=4.4e-11 Score=119.61 Aligned_cols=144 Identities=24% Similarity=0.374 Sum_probs=91.8
Q ss_pred cccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC--c-----eEEEec----
Q 015875 140 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--C-----FIRVIG---- 208 (399)
Q Consensus 140 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~--~-----~i~v~~---- 208 (399)
++++.+.+...+.+...+. ..++++|+||||||||++|+.+|..+.. . ++.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 4567777777777766654 2568999999999999999999998742 1 122221
Q ss_pred cchhhhh--hchh----HHHHHHHHHHHHc--CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHh--------
Q 015875 209 SELVQKY--VGEG----ARMVRELFQMARS--KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL-------- 272 (399)
Q Consensus 209 s~l~~~~--~g~~----~~~v~~~f~~a~~--~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l-------- 272 (399)
.+++..+ .+.+ ...+.+++..|.. ..|++||||||++... ..+...++.+++.-
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH----------HHhhhhhhhhccccccccccce
Confidence 1222211 1111 1223344455554 3578999999998732 23344444444320
Q ss_pred ---------cCCCCCCCeEEEEecCCCC----CCCccccCCCCceeEEEecC
Q 015875 273 ---------DGFDARGNIKVLMATNRPD----TLDPALLRPGRLDRKVEFGL 311 (399)
Q Consensus 273 ---------~~~~~~~~v~vI~atn~~~----~ld~al~r~gRf~~~i~~~~ 311 (399)
+.+....++.||+|.|..+ .+|.|++| || ..|++.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF-~fi~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RF-SFIDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hh-heEEecC
Confidence 1244556899999999876 79999999 99 5677765
No 203
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.28 E-value=1.2e-11 Score=125.97 Aligned_cols=210 Identities=18% Similarity=0.264 Sum_probs=135.1
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhch
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE 218 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~ 218 (399)
.+.|.+..+..+.+.+... ......++++|++||||+++|++++... +.+|+.++|..+......
T Consensus 140 ~lig~s~~~~~~~~~i~~~-----------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~- 207 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV-----------APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLE- 207 (441)
T ss_pred ceEecCHHHHHHHHHHhhc-----------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHH-
Confidence 4677777777776665431 1345679999999999999999999754 579999999876432211
Q ss_pred hHHHHHHHHH---------------HHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CCC----C
Q 015875 219 GARMVRELFQ---------------MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD----A 277 (399)
Q Consensus 219 ~~~~v~~~f~---------------~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~----~ 277 (399)
..+|. ......+++|||||||.+ +...|..++.+++.-. ... .
T Consensus 208 -----~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (441)
T PRK10365 208 -----SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI-----------SPMMQVRLLRAIQEREVQRVGSNQTI 271 (441)
T ss_pred -----HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccC-----------CHHHHHHHHHHHccCcEEeCCCCcee
Confidence 11121 112334679999999999 7889999998887532 111 1
Q ss_pred CCCeEEEEecCCC--CCCCccccCCCCcee--EEEecCCCHHHHHH----HHHHHHhcc----CCC-CcccHHHHHHHCC
Q 015875 278 RGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ----IFKIHTRTM----NCE-RDIRFELLARLCP 344 (399)
Q Consensus 278 ~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~----Il~~~~~~~----~~~-~~~~~~~la~~~~ 344 (399)
..++.+|++|+.. ..+.+..+++..|.+ .+.+..|++.+|.+ +++.++... +.. ..++.+.+..+..
T Consensus 272 ~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 351 (441)
T PRK10365 272 SVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH 351 (441)
T ss_pred eeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 2357889888764 222222232212222 67888899988876 444444332 221 3466777777777
Q ss_pred CCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 345 NSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 345 g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
.-|+++++.+.+.+...+.......|+.+|+...+
T Consensus 352 ~~wpgN~reL~~~~~~~~~~~~~~~i~~~~l~~~~ 386 (441)
T PRK10365 352 YDWPGNIRELENAVERAVVLLTGEYISERELPLAI 386 (441)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCccchHhCchhh
Confidence 66776777776666665555566778888876543
No 204
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.25 E-value=9e-12 Score=112.44 Aligned_cols=45 Identities=33% Similarity=0.524 Sum_probs=37.3
Q ss_pred cccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 140 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 140 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
|.+|.|++.+++.|.-+... ..++||+||||||||++|+.+..-+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 78899999999999877763 3589999999999999999999854
No 205
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.25 E-value=1.6e-10 Score=118.24 Aligned_cols=214 Identities=18% Similarity=0.186 Sum_probs=132.0
Q ss_pred CccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC----CceEEEe------
Q 015875 138 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVI------ 207 (399)
Q Consensus 138 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~----~~~i~v~------ 207 (399)
..|.++.|+..+++.+.-. +....+++|+||||+|||++++.++..+. ...+.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 3677788988776654322 23456899999999999999999997542 1111111
Q ss_pred cc-----ch-----h--------hhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHH
Q 015875 208 GS-----EL-----V--------QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 269 (399)
Q Consensus 208 ~s-----~l-----~--------~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 269 (399)
+. .+ . ...+|.+...-...+..| ..++||+||++.+ +...+..|.+.+
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A---~gGvLfLDEi~e~-----------~~~~~~~L~~~L 318 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLA---HNGVLFLDELPEF-----------ERRTLDALREPI 318 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhc---cCCEEecCCchhC-----------CHHHHHHHHHHH
Confidence 00 00 0 001222111111233333 3349999999998 788899999888
Q ss_pred HHhc----CC----CCCCCeEEEEecCCCC---------------------CCCccccCCCCceeEEEecCCCHHH----
Q 015875 270 NQLD----GF----DARGNIKVLMATNRPD---------------------TLDPALLRPGRLDRKVEFGLPDLES---- 316 (399)
Q Consensus 270 ~~l~----~~----~~~~~v~vI~atn~~~---------------------~ld~al~r~gRf~~~i~~~~P~~~e---- 316 (399)
++-. .. ....++.+|+|+|... .++.++++ |||..+.++.|+.++
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~ 396 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKT 396 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcc
Confidence 6522 11 1234789999999742 36668888 999999999885321
Q ss_pred ------HHHHHHH------H--HhccCCCCcccHH----------------HHHHHCCCCcHHHHHHHHHHHHHHHHHHc
Q 015875 317 ------RTQIFKI------H--TRTMNCERDIRFE----------------LLARLCPNSTGADIRSVCTEAGMFAIRAR 366 (399)
Q Consensus 317 ------r~~Il~~------~--~~~~~~~~~~~~~----------------~la~~~~g~sg~di~~l~~~A~~~A~~~~ 366 (399)
...+-+. . .++-.+...+... .-+....+.|+|....+++.|...|..++
T Consensus 397 ~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g 476 (506)
T PRK09862 397 VVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQ 476 (506)
T ss_pred cCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 1111110 0 0000001111111 11123347899999999999999999999
Q ss_pred CCCccHHHHHHHHHHH
Q 015875 367 RKTVTEKDFLDAVNKV 382 (399)
Q Consensus 367 ~~~It~ed~~~ai~~v 382 (399)
+..|+.+|+.+|+.--
T Consensus 477 ~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 477 SDIITRQHLQEAVSYR 492 (506)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998743
No 206
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.23 E-value=3.3e-10 Score=121.30 Aligned_cols=201 Identities=18% Similarity=0.161 Sum_probs=124.2
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc-------CCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCc
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA 245 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~-------~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~ 245 (399)
+...+|||.|+||||||.+|+++++.. +.++..+.+..... +.+.....+..--........+++||||+|.
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvlAdgGtL~IDEidk 568 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVLANGGVCCIDELDK 568 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEEcCCCeEEecchhh
Confidence 344589999999999999999999853 23444444433221 0000000000000001123346999999999
Q ss_pred ccCCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEecCCC-------------CCCCccccCCCCce
Q 015875 246 IGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRP-------------DTLDPALLRPGRLD 304 (399)
Q Consensus 246 l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~-------------~~ld~al~r~gRf~ 304 (399)
+ +...|..|++++++-. |. .-+.++.||+|+|+. -.|++++++ |||
T Consensus 569 m-----------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFD 635 (915)
T PTZ00111 569 C-----------HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFD 635 (915)
T ss_pred C-----------CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhc
Confidence 9 7888999999987632 11 123578999999974 246789999 998
Q ss_pred eEE-EecCCCHHHHHHHHHHHHhcc---------------------------------------------------CCCC
Q 015875 305 RKV-EFGLPDLESRTQIFKIHTRTM---------------------------------------------------NCER 332 (399)
Q Consensus 305 ~~i-~~~~P~~~er~~Il~~~~~~~---------------------------------------------------~~~~ 332 (399)
..+ .+..|+.+.-..|..+.++.. .+.+
T Consensus 636 LIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P 715 (915)
T PTZ00111 636 LIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFP 715 (915)
T ss_pred EEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCC
Confidence 865 445566554444322221100 0011
Q ss_pred ccc---HHHHH----H-HC--------------------------C-----CCcHHHHHHHHHHHHHHHHHHcCCCccHH
Q 015875 333 DIR---FELLA----R-LC--------------------------P-----NSTGADIRSVCTEAGMFAIRARRKTVTEK 373 (399)
Q Consensus 333 ~~~---~~~la----~-~~--------------------------~-----g~sg~di~~l~~~A~~~A~~~~~~~It~e 373 (399)
.+. -+.|. . +. . -.+.++|.++++-|...|..+-+..|+.+
T Consensus 716 ~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~ 795 (915)
T PTZ00111 716 KLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPA 795 (915)
T ss_pred CCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHH
Confidence 111 11111 1 11 1 14679999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 015875 374 DFLDAVNKVIKGYQ 387 (399)
Q Consensus 374 d~~~ai~~v~~~~~ 387 (399)
|+..|++-+.....
T Consensus 796 Dv~~Ai~L~~~sl~ 809 (915)
T PTZ00111 796 DALQAVQIVKSSTF 809 (915)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998865543
No 207
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.21 E-value=2.3e-10 Score=111.60 Aligned_cols=166 Identities=18% Similarity=0.173 Sum_probs=111.1
Q ss_pred cc-cccCcHHHHHHHHHHHhcCCCChhHHHhhCC-CCCCceeEeCCCCCcHHHHHHHHHHhcCC-------ceEEEec--
Q 015875 140 YN-DVGGCKEQIEKMREVVELPMLHPEKFVKLGI-DPPKGVLCYGPPGTGKTLLARAVANRTDA-------CFIRVIG-- 208 (399)
Q Consensus 140 ~~-~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~-~~~~~vLL~GppGtGKT~larala~~~~~-------~~i~v~~-- 208 (399)
|+ ++.|+++++.++.+++.... .|. ...+.++|+||||+|||++|++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 44 79999999999998886532 132 23567899999999999999999998865 7777765
Q ss_pred --cchhhhhhchhHHHHHHHHHH---------------------------------------------------------
Q 015875 209 --SELVQKYVGEGARMVRELFQM--------------------------------------------------------- 229 (399)
Q Consensus 209 --s~l~~~~~g~~~~~v~~~f~~--------------------------------------------------------- 229 (399)
+.+....++-....++..|..
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~ 200 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENN 200 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCc
Confidence 443332222211111111111
Q ss_pred --------------H-----------------HcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcC----
Q 015875 230 --------------A-----------------RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG---- 274 (399)
Q Consensus 230 --------------a-----------------~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~---- 274 (399)
+ .....+|+-|+|+.+. +.+.+..|+.++++..-
T Consensus 201 qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~-----------~~~~l~~LL~~~qE~~v~~~~ 269 (361)
T smart00763 201 QDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKA-----------DIKFLHPLLTATQEGNIKGTG 269 (361)
T ss_pred ccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcC-----------CHHHHHHHhhhhhcceEecCC
Confidence 0 0011248888888887 78888999988887331
Q ss_pred C--CCCCCeEEEEecCCC-------CCCCccccCCCCceeEEEecCC-CHHHHHHHHHHHHhc
Q 015875 275 F--DARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLP-DLESRTQIFKIHTRT 327 (399)
Q Consensus 275 ~--~~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P-~~~er~~Il~~~~~~ 327 (399)
. .-.-+.+||+++|.. .....+|++ ||. .+.+|.| +..+-.+|.+..+..
T Consensus 270 ~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 270 GFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred cccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 1 112245788899875 355788988 995 8888886 667777788877754
No 208
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.20 E-value=1.6e-10 Score=101.81 Aligned_cols=134 Identities=25% Similarity=0.387 Sum_probs=92.9
Q ss_pred CcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc----------------------
Q 015875 145 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------------------- 202 (399)
Q Consensus 145 G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~---------------------- 202 (399)
|++++++.|.+.+.. -+-|..+||+||+|+||+++|+++|+.+-+.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 788999999998875 2456689999999999999999999965221
Q ss_pred -eEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 015875 203 -FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 277 (399)
Q Consensus 203 -~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 277 (399)
++.+....... .-....++.+...+.. ....|++|||+|.| +.+.++.|+..|++ +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEe-----p 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEE-----P 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHS-----T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcC-----C
Confidence 22222211100 0123445555555432 34679999999999 78999999999985 5
Q ss_pred CCCeEEEEecCCCCCCCccccCCCCceeEEEecCC
Q 015875 278 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLP 312 (399)
Q Consensus 278 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P 312 (399)
..++.+|++|+.++.+-|.+++ |+ ..+.|++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 6789999999999999999999 88 67777654
No 209
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=7.9e-10 Score=107.45 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=105.2
Q ss_pred cHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc-----------------------
Q 015875 146 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------------------- 202 (399)
Q Consensus 146 ~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~----------------------- 202 (399)
+....+.|...+.. -+-+.++||+||+|+||+++|+++|+.+-+.
T Consensus 7 ~~~~~~~l~~~~~~------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 7 LQPTYQQITQAFQQ------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred hHHHHHHHHHHHHc------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45666777777654 1346689999999999999999999976331
Q ss_pred -eEEEeccchhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 015875 203 -FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 277 (399)
Q Consensus 203 -~i~v~~s~l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 277 (399)
++.+...+ ++. -+-..+|++.+.+. .....|++||++|.| +.+.++.|+..|++ +
T Consensus 75 D~~~i~p~~--~~~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLEE-----P 134 (325)
T PRK06871 75 DFHILEPID--NKD--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLEE-----P 134 (325)
T ss_pred CEEEEcccc--CCC--CCHHHHHHHHHHHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhcC-----C
Confidence 11111100 000 12334555544433 344569999999999 77889999998885 5
Q ss_pred CCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHH
Q 015875 278 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIH 324 (399)
Q Consensus 278 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~ 324 (399)
..++++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 135 p~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 135 RPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 6788899999999999999999 98 78999999999888877654
No 210
>PRK08116 hypothetical protein; Validated
Probab=99.19 E-value=2.3e-10 Score=108.87 Aligned_cols=123 Identities=21% Similarity=0.260 Sum_probs=81.7
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhchh----HHHHHHHHHHHHcCCCEEEEEecCCccc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG----ARMVRELFQMARSKKACIVFFDEVDAIG 247 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~~----~~~v~~~f~~a~~~~p~il~iDEiD~l~ 247 (399)
+.+++|+|++|||||+||.++++++ +.+++.++.++++....... ......+++... ...+|+|||++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999975 78888899888776543221 111223333332 33599999996531
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CC----CCccccCCCCc---eeEEEecCCCH
Q 015875 248 GARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP-DT----LDPALLRPGRL---DRKVEFGLPDL 314 (399)
Q Consensus 248 ~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~-~~----ld~al~r~gRf---~~~i~~~~P~~ 314 (399)
.....+..+..+++... ..+..+|+|||.+ .. ++..+.+ |+ ...|.+.-||.
T Consensus 192 ---------~t~~~~~~l~~iin~r~----~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ---------DTEWAREKVYNIIDSRY----RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ---------CCHHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 14566778888888643 1234588888874 22 4566666 64 34577777775
No 211
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.18 E-value=2.1e-11 Score=104.39 Aligned_cols=106 Identities=28% Similarity=0.508 Sum_probs=77.7
Q ss_pred cCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC---CceEEEeccchhhhhhchhH
Q 015875 144 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELVQKYVGEGA 220 (399)
Q Consensus 144 ~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~---~~~i~v~~s~l~~~~~g~~~ 220 (399)
+|.+..++++++.+.... .....|||+|++||||+++|++++...+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a-----------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-----------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-----------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHHh-----------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 477888888888886522 3456899999999999999999999764 466666666543
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 221 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 221 ~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
.++++.+ ..++|||+|+|.+ +.+.|..+.+++...+ ..++++|+++..
T Consensus 62 ---~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 ---AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQ 109 (138)
T ss_dssp ---HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC
T ss_pred ---HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCC
Confidence 3345444 5559999999999 8899999999998733 456788888865
No 212
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.18 E-value=1.2e-09 Score=101.21 Aligned_cols=185 Identities=14% Similarity=0.211 Sum_probs=132.2
Q ss_pred ccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-C--CceEE
Q 015875 129 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-D--ACFIR 205 (399)
Q Consensus 129 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-~--~~~i~ 205 (399)
++|++.+.+.+++.+.+.++....++..... ..-.++++|||+|+||-|.+.++.+++ | .+-++
T Consensus 1 ~LWvdkyrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklk 67 (351)
T KOG2035|consen 1 MLWVDKYRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLK 67 (351)
T ss_pred CcchhhcCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchhee
Confidence 3678889999999999999999998887642 112379999999999999999999875 2 22112
Q ss_pred Eeccch-------------hhh--------hhchhHH-HHHHHHHHHHc---------CCCEEEEEecCCcccCCccCCC
Q 015875 206 VIGSEL-------------VQK--------YVGEGAR-MVRELFQMARS---------KKACIVFFDEVDAIGGARFDDG 254 (399)
Q Consensus 206 v~~s~l-------------~~~--------~~g~~~~-~v~~~f~~a~~---------~~p~il~iDEiD~l~~~r~~~~ 254 (399)
+....+ .+. ..|.-.+ .+.++.....+ ....+++|.|.|.+
T Consensus 68 i~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-------- 139 (351)
T KOG2035|consen 68 IETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-------- 139 (351)
T ss_pred eeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh--------
Confidence 211111 011 1222222 23444444332 22359999999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-Cc
Q 015875 255 VGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RD 333 (399)
Q Consensus 255 ~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~ 333 (399)
..+.|..|-+-++-. .+++.+|..+|....+-+++++ |+ ..|.+|.|+.++...++...+.+.++. +.
T Consensus 140 ---T~dAQ~aLRRTMEkY-----s~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~ 208 (351)
T KOG2035|consen 140 ---TRDAQHALRRTMEKY-----SSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPK 208 (351)
T ss_pred ---hHHHHHHHHHHHHHH-----hcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcH
Confidence 678899888887754 4578899999999999999999 87 789999999999999999999887765 22
Q ss_pred ccHHHHHHHCCC
Q 015875 334 IRFELLARLCPN 345 (399)
Q Consensus 334 ~~~~~la~~~~g 345 (399)
.-+..++..+.|
T Consensus 209 ~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 209 ELLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHHhcc
Confidence 334566666554
No 213
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.4e-10 Score=110.01 Aligned_cols=86 Identities=29% Similarity=0.370 Sum_probs=63.3
Q ss_pred CEEEEEecCCcccCCccCCC-CCCChHHHHHHHHHHHHh-----cCCCCCCCeEEEEec----CCCCCCCccccCCCCce
Q 015875 235 ACIVFFDEVDAIGGARFDDG-VGGDNEVQRTMLEIVNQL-----DGFDARGNIKVLMAT----NRPDTLDPALLRPGRLD 304 (399)
Q Consensus 235 p~il~iDEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~l-----~~~~~~~~v~vI~at----n~~~~ld~al~r~gRf~ 304 (399)
.+|+||||||.++.+...++ .-+...+|+-++-+++-- .|...+.++.+|++. ..|+.|=|.|. |||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCc
Confidence 45999999999987764333 223456888888877531 222344568888876 45788888885 5999
Q ss_pred eEEEecCCCHHHHHHHHH
Q 015875 305 RKVEFGLPDLESRTQIFK 322 (399)
Q Consensus 305 ~~i~~~~P~~~er~~Il~ 322 (399)
-.+++...+.++...||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999988774
No 214
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.17 E-value=8.5e-10 Score=108.23 Aligned_cols=219 Identities=24% Similarity=0.322 Sum_probs=138.7
Q ss_pred CCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEec--------
Q 015875 137 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG-------- 208 (399)
Q Consensus 137 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~-------- 208 (399)
...|.-++|++..+..|-..... +.-.++||-|+.|||||+++|+||..+...-+...|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 35566699999988876554333 223489999999999999999999976322111111
Q ss_pred -----cc-------------------hhhhhhchhHH-HHH-----HHHH----------HHHcCCCEEEEEecCCcccC
Q 015875 209 -----SE-------------------LVQKYVGEGAR-MVR-----ELFQ----------MARSKKACIVFFDEVDAIGG 248 (399)
Q Consensus 209 -----s~-------------------l~~~~~g~~~~-~v~-----~~f~----------~a~~~~p~il~iDEiD~l~~ 248 (399)
.+ ++....|.++. .+. ...+ .++ ..-+|+++||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~-AnRGIlYvDEvnlL-- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR-ANRGILYVDEVNLL-- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh-ccCCEEEEeccccc--
Confidence 11 12222333333 111 1111 011 22359999999999
Q ss_pred CccCCCCCCChHHHHHHHHHHHHh------cCC--CCCCCeEEEEecCCC-CCCCccccCCCCceeEEEecCC-CHHHHH
Q 015875 249 ARFDDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRP-DTLDPALLRPGRLDRKVEFGLP-DLESRT 318 (399)
Q Consensus 249 ~r~~~~~~~~~~~~~~l~~ll~~l------~~~--~~~~~v~vI~atn~~-~~ld~al~r~gRf~~~i~~~~P-~~~er~ 318 (399)
+..++..|+..+.+- +|+ ....++++|+|.|+- ..|-|.|+. ||...+.+..| +.++|.
T Consensus 157 ---------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv 225 (423)
T COG1239 157 ---------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERV 225 (423)
T ss_pred ---------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHH
Confidence 889999999999873 222 344578999999984 568888888 99999988876 788999
Q ss_pred HHHHHHHhccCCCCccc-------------------------------HHHHHHHCC--CC--cHHHHHHHHHHHHHHHH
Q 015875 319 QIFKIHTRTMNCERDIR-------------------------------FELLARLCP--NS--TGADIRSVCTEAGMFAI 363 (399)
Q Consensus 319 ~Il~~~~~~~~~~~~~~-------------------------------~~~la~~~~--g~--sg~di~~l~~~A~~~A~ 363 (399)
+|.+....- ...++.. ...++..+. +. ..+++ -+.+.|...|.
T Consensus 226 ~Ii~r~~~f-~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi-~~~r~a~a~aa 303 (423)
T COG1239 226 EIIRRRLAF-EAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADI-VVVRAAKALAA 303 (423)
T ss_pred HHHHHHHHh-hcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhh-HHHHHHHHHHH
Confidence 988765542 1111111 111121111 11 11233 23455566777
Q ss_pred HHcCCCccHHHHHHHHHHHHh
Q 015875 364 RARRKTVTEKDFLDAVNKVIK 384 (399)
Q Consensus 364 ~~~~~~It~ed~~~ai~~v~~ 384 (399)
..++..++.+|+.+|..-...
T Consensus 304 ~~Gr~~v~~~Di~~a~~l~l~ 324 (423)
T COG1239 304 LRGRTEVEEEDIREAAELALL 324 (423)
T ss_pred hcCceeeehhhHHHHHhhhhh
Confidence 889999999999999887754
No 215
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.17 E-value=9.3e-10 Score=113.16 Aligned_cols=194 Identities=20% Similarity=0.277 Sum_probs=132.6
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhc----------CCceEEEeccchhhh----------hhchh------HHHHHHHHHH
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRT----------DACFIRVIGSELVQK----------YVGEG------ARMVRELFQM 229 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~----------~~~~i~v~~s~l~~~----------~~g~~------~~~v~~~f~~ 229 (399)
..++++|-||||||.+++.+-+.+ ...++.+|+-.|... +.|+. -..+..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 379999999999999999999854 356888888665431 22221 1122222221
Q ss_pred H-HcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC----CCccccCCCCce
Q 015875 230 A-RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT----LDPALLRPGRLD 304 (399)
Q Consensus 230 a-~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~----ld~al~r~gRf~ 304 (399)
. ....++||+|||+|.|.+.. |..|..+++.-. ..+.+++||+.+|..+. |....-+ |++
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg 567 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLG 567 (767)
T ss_pred CCCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh--hcc
Confidence 1 12457899999999997642 677778777643 24567888888886542 2233333 554
Q ss_pred e-EEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcH--HHHHHHHHHHHHHHHHHcC-------CCccHHH
Q 015875 305 R-KVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG--ADIRSVCTEAGMFAIRARR-------KTVTEKD 374 (399)
Q Consensus 305 ~-~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg--~di~~l~~~A~~~A~~~~~-------~~It~ed 374 (399)
. .+.|.+++..+..+|+...+.....-.+-..+.+|+.....|| +....+|++|...|-.+.. ..|+..|
T Consensus 568 ~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~ 647 (767)
T KOG1514|consen 568 LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILH 647 (767)
T ss_pred ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHH
Confidence 4 8899999999999999999887643223334555555544455 5566789999998876665 5689999
Q ss_pred HHHHHHHHHh
Q 015875 375 FLDAVNKVIK 384 (399)
Q Consensus 375 ~~~ai~~v~~ 384 (399)
+.+|++++..
T Consensus 648 v~~Ai~em~~ 657 (767)
T KOG1514|consen 648 VMEAINEMLA 657 (767)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 216
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.15 E-value=9.2e-12 Score=103.62 Aligned_cols=107 Identities=28% Similarity=0.405 Sum_probs=62.4
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEecc-chh-hhhhchh-----HH----HHHHHHHHHHcCCCEEEEEecCCc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGS-ELV-QKYVGEG-----AR----MVRELFQMARSKKACIVFFDEVDA 245 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s-~l~-~~~~g~~-----~~----~v~~~f~~a~~~~p~il~iDEiD~ 245 (399)
+|||+|+||+|||++|+++|+.++..|.+|.+. ++. +...|.. .. .-.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999999874 332 1111110 00 000111 13999999999
Q ss_pred ccCCccCCCCCCChHHHHHHHHHHHHhc----C--CCCCCCeEEEEecCCCC-----CCCccccCCCCc
Q 015875 246 IGGARFDDGVGGDNEVQRTMLEIVNQLD----G--FDARGNIKVLMATNRPD-----TLDPALLRPGRL 303 (399)
Q Consensus 246 l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~--~~~~~~v~vI~atn~~~-----~ld~al~r~gRf 303 (399)
. .+.+|..+++.+.+-. + +.-.....||+|-|+.+ .|+.+++. ||
T Consensus 74 a-----------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 A-----------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred C-----------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 8 7899999999998732 1 12234578888889764 56777776 66
No 217
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=8.9e-10 Score=108.73 Aligned_cols=222 Identities=21% Similarity=0.260 Sum_probs=149.0
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC-----CceEEEeccchhh--
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACFIRVIGSELVQ-- 213 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~-----~~~i~v~~s~l~~-- 213 (399)
..+.|.+..+..+++++..++. ...+.++++.|.||||||.+..-+-.... ...++++|.++..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle---------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE---------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh---------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 3589999999999999987543 36678999999999999999987766442 2447788865321
Q ss_pred ----h----h----hchhHH-HHHHHHH-HHHcC-CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 015875 214 ----K----Y----VGEGAR-MVRELFQ-MARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 278 (399)
Q Consensus 214 ----~----~----~g~~~~-~v~~~f~-~a~~~-~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 278 (399)
+ + .+.+.. .....|. ..... .+-++++||+|.++... +..+..+++.-. -.+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lFewp~--lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLFEWPK--LPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeehhccc--CCc
Confidence 1 1 111111 1122232 22222 36799999999997432 344444444311 235
Q ss_pred CCeEEEEecCCCCCCCccccC----CCCceeEEEecCCCHHHHHHHHHHHHhccCCCC--cccHHHHHHHCCCCcHHHHH
Q 015875 279 GNIKVLMATNRPDTLDPALLR----PGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER--DIRFELLARLCPNSTGADIR 352 (399)
Q Consensus 279 ~~v~vI~atn~~~~ld~al~r----~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~--~~~~~~la~~~~g~sg~di~ 352 (399)
.++++|+.+|..+.-|..|-| -+.-...+.|++++.++..+||+..+....... +..++.+|+...+.|| |+|
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 578889999987654443332 122235889999999999999999998776543 2346788888989888 555
Q ss_pred ---HHHHHHHHHHHHHcC----------------CCccHHHHHHHHHHHHhh
Q 015875 353 ---SVCTEAGMFAIRARR----------------KTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 353 ---~l~~~A~~~A~~~~~----------------~~It~ed~~~ai~~v~~~ 385 (399)
.+|+.|...|....+ ..|..+++..++.++...
T Consensus 367 kaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s 418 (529)
T KOG2227|consen 367 KALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGS 418 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccC
Confidence 578888887766543 235678888888887543
No 218
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.14 E-value=2.1e-09 Score=110.67 Aligned_cols=212 Identities=14% Similarity=0.204 Sum_probs=128.6
Q ss_pred ccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 127 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 127 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
...+|++.+.|.+.+||.....-+++++.+++..+. +..+.+-+||+||||||||++++.+|++++..+..-
T Consensus 5 ~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 5 ESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred ccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 346789999999999999999999999999985221 234455789999999999999999999998877664
Q ss_pred eccch-h------hhhhch---hH------HHHHHH-HHHHHc-----------CCCEEEEEecCCcccCCccCCCCCCC
Q 015875 207 IGSEL-V------QKYVGE---GA------RMVREL-FQMARS-----------KKACIVFFDEVDAIGGARFDDGVGGD 258 (399)
Q Consensus 207 ~~s~l-~------~~~~g~---~~------~~v~~~-f~~a~~-----------~~p~il~iDEiD~l~~~r~~~~~~~~ 258 (399)
..+.. . ..+.+. .. ....++ +..++. ....||+|||+=.++... .
T Consensus 77 ~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~ 149 (519)
T PF03215_consen 77 INPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------T 149 (519)
T ss_pred cCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-------H
Confidence 32211 0 011111 00 011111 111111 246799999998765421 2
Q ss_pred hHHHHHHHHHHHHhcCCCCCC-CeEEEEe-cC------CC--------CCCCccccCCCCceeEEEecCCCHHHHHHHHH
Q 015875 259 NEVQRTMLEIVNQLDGFDARG-NIKVLMA-TN------RP--------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFK 322 (399)
Q Consensus 259 ~~~~~~l~~ll~~l~~~~~~~-~v~vI~a-tn------~~--------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~ 322 (399)
..+...|.+++.. ... .+++|++ ++ .. ..+++.++...++ ..|.|.+-...-....|+
T Consensus 150 ~~f~~~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~ 223 (519)
T PF03215_consen 150 SRFREALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALK 223 (519)
T ss_pred HHHHHHHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHH
Confidence 3444444444442 222 6666666 11 11 1345666654344 688898877766666555
Q ss_pred HHHhcc-----C--CCCc-cc-HHHHHHHCCCCcHHHHHHHHHHHHHHHH
Q 015875 323 IHTRTM-----N--CERD-IR-FELLARLCPNSTGADIRSVCTEAGMFAI 363 (399)
Q Consensus 323 ~~~~~~-----~--~~~~-~~-~~~la~~~~g~sg~di~~l~~~A~~~A~ 363 (399)
..+... + ..+. .. ++.|+..+. +|||.+++...+.+.
T Consensus 224 rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 224 RILKKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 444332 1 1111 11 455655544 499999998888886
No 219
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.5e-09 Score=105.43 Aligned_cols=167 Identities=19% Similarity=0.225 Sum_probs=112.2
Q ss_pred cHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceE----EEeccchhh--------
Q 015875 146 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI----RVIGSELVQ-------- 213 (399)
Q Consensus 146 ~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i----~v~~s~l~~-------- 213 (399)
+..+++.+...+.. -+-|..+||+||+|+||+++|.++|+.+-+.-. ...+..++.
T Consensus 9 ~~~~~~~l~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 9 QQRAYDQTVAALDA------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred HHHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE
Confidence 45677777777754 245668999999999999999999987633100 000100110
Q ss_pred -h-----hhc------hhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 015875 214 -K-----YVG------EGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 277 (399)
Q Consensus 214 -~-----~~g------~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 277 (399)
- ..| -.-..+|++.+.+.. ....|++||++|.| +.+.++.|+..|++ +
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----P 140 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE-----P 140 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC-----C
Confidence 0 001 123345555554432 33469999999999 77889999998885 5
Q ss_pred CCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcH
Q 015875 278 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG 348 (399)
Q Consensus 278 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg 348 (399)
..++++|.+|+.++.+-|.+++ |+ ..+.|+.|+.++-...|... +.. ..+...++..+.|..+
T Consensus 141 p~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 141 SPGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred CCCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 5678889999999999999999 99 88999999998887776542 222 1223355666666544
No 220
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=5.5e-10 Score=109.31 Aligned_cols=133 Identities=21% Similarity=0.266 Sum_probs=96.6
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCce-------------------------EEEeccchhh--------------
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDACF-------------------------IRVIGSELVQ-------------- 213 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~~-------------------------i~v~~s~l~~-------------- 213 (399)
+.|.++||+||+|+||+++|+++|+.+.+.. ..+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 5677999999999999999999999764421 1111100000
Q ss_pred hhhc---------hhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 015875 214 KYVG---------EGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 280 (399)
Q Consensus 214 ~~~g---------~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 280 (399)
...| -.-..+|++.+.+. .....|++||++|.| +.+..+.|+..|++ +..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLEE-----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCcC
Confidence 0000 01234555555443 234569999999999 77888899888884 5778
Q ss_pred eEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHH
Q 015875 281 IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIH 324 (399)
Q Consensus 281 v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~ 324 (399)
+++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8899999999999999999 99 89999999999998887654
No 221
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=1.2e-09 Score=106.99 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=111.1
Q ss_pred cHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc-----------------------
Q 015875 146 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------------------- 202 (399)
Q Consensus 146 ~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~----------------------- 202 (399)
+....+++.+.+.. -+.+..+||+||+|+||+++|.++|..+-+.
T Consensus 7 l~~~~~~l~~~~~~------------~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (334)
T PRK07993 7 LRPDYEQLVGSYQA------------GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_pred ChHHHHHHHHHHHc------------CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 35566666666653 2456689999999999999999999976331
Q ss_pred -eEEEeccchhhhhhchhHHHHHHHHHHH----HcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 015875 203 -FIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 277 (399)
Q Consensus 203 -~i~v~~s~l~~~~~g~~~~~v~~~f~~a----~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 277 (399)
+..+.... ... .-+-..+|++.+.+ ......|++||++|.| +.+.++.|+..|++ +
T Consensus 75 D~~~i~p~~-~~~--~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----P 135 (334)
T PRK07993 75 DYYTLTPEK-GKS--SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLEE-----P 135 (334)
T ss_pred CEEEEeccc-ccc--cCCHHHHHHHHHHHhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhcC-----C
Confidence 11111100 000 01223444444433 3355679999999999 77889999998885 5
Q ss_pred CCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcH
Q 015875 278 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG 348 (399)
Q Consensus 278 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg 348 (399)
..++++|..|+.++.|.|.+++ |+ ..+.|++|+.++....|... .+.. ......++..+.|..+
T Consensus 136 p~~t~fiL~t~~~~~lLpTIrS--RC-q~~~~~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 136 PENTWFFLACREPARLLATLRS--RC-RLHYLAPPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAPG 199 (334)
T ss_pred CCCeEEEEEECChhhChHHHHh--cc-ccccCCCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCHH
Confidence 6788899999999999999999 98 57899999988887766542 1222 1123445566666443
No 222
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.2e-09 Score=104.90 Aligned_cols=96 Identities=35% Similarity=0.497 Sum_probs=73.8
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh-hhhchh-HHHHHHHHHHHH----cCCCEEEEEecCCcccCC
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGEG-ARMVRELFQMAR----SKKACIVFFDEVDAIGGA 249 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~-~~~g~~-~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~ 249 (399)
.+|||.||+|+|||+||+.+|+-++.||...+|..|.+ .|+|+. +..+..++..|. ..+.+|+||||+|.|...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 47999999999999999999999999999999999876 588875 444555665543 345569999999999743
Q ss_pred ccC-CC--CCCChHHHHHHHHHHHH
Q 015875 250 RFD-DG--VGGDNEVQRTMLEIVNQ 271 (399)
Q Consensus 250 r~~-~~--~~~~~~~~~~l~~ll~~ 271 (399)
..+ +. .-+...+|..|+.+++-
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 311 11 12346789999998863
No 223
>PRK12377 putative replication protein; Provisional
Probab=99.11 E-value=8.2e-10 Score=103.55 Aligned_cols=101 Identities=23% Similarity=0.248 Sum_probs=68.9
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhchhH--HHHHHHHHHHHcCCCEEEEEecCCcccCC
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGA--RMVRELFQMARSKKACIVFFDEVDAIGGA 249 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~~~--~~v~~~f~~a~~~~p~il~iDEiD~l~~~ 249 (399)
..+++|+||||||||+||.++|+.+ +..++.+...++......... .....++... ....+|+|||++....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~- 177 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE- 177 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC-
Confidence 4589999999999999999999976 667788888777664432110 0112233333 3456999999977632
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 250 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 250 r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
+...+..+.++++.-. .....+|.|||..
T Consensus 178 --------s~~~~~~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 178 --------TKNEQVVLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred --------CHHHHHHHHHHHHHHH----hcCCCEEEEcCCC
Confidence 4456778888888643 2234478899964
No 224
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=7.9e-10 Score=118.20 Aligned_cols=129 Identities=26% Similarity=0.405 Sum_probs=101.2
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCC---CCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh--
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGI---DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-- 213 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~---~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~-- 213 (399)
.|+|+++++..+-++|...-. |. .++.+++|.||.|+|||-||+++|..+ ...+++++++++..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~--------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRA--------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhhhc--------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 499999999999999986322 22 366789999999999999999999976 46799999997654
Q ss_pred hhhchh-----HHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC------CCeE
Q 015875 214 KYVGEG-----ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR------GNIK 282 (399)
Q Consensus 214 ~~~g~~-----~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~------~~v~ 282 (399)
+..|.. ......+.+..+....+||+|||||.. +..++..|+++++...-.+.. .+++
T Consensus 635 kligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 635 KLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred hccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 222221 223457778888888899999999998 899999999999875433333 3789
Q ss_pred EEEecCC
Q 015875 283 VLMATNR 289 (399)
Q Consensus 283 vI~atn~ 289 (399)
||||+|.
T Consensus 704 ~IMTsn~ 710 (898)
T KOG1051|consen 704 FIMTSNV 710 (898)
T ss_pred EEEeccc
Confidence 9999885
No 225
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.09 E-value=5.2e-10 Score=105.66 Aligned_cols=170 Identities=20% Similarity=0.229 Sum_probs=120.2
Q ss_pred CcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc--
Q 015875 125 PSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-- 202 (399)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~-- 202 (399)
+.....|++.+++...++++++++.+..+.+.... ..-.+.|+|||||||||....+.|..+-.+
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~ 91 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHP 91 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCC
Confidence 44456688999999999999999999999888543 222289999999999999999999987553
Q ss_pred ----eEEEeccchhhhhhchhHHHHHHHHHHHHc-------CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHH
Q 015875 203 ----FIRVIGSELVQKYVGEGARMVRELFQMARS-------KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 271 (399)
Q Consensus 203 ----~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~-------~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 271 (399)
+..++.|+-.+ .+ ..+.--..|...+. ..+..+++||.|++ ....|++|-+.++.
T Consensus 92 ~~~m~lelnaSd~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek 157 (360)
T KOG0990|consen 92 TTSMLLELNASDDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEK 157 (360)
T ss_pred chhHHHHhhccCccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHH
Confidence 11112211110 00 11222234544442 36679999999999 67888888886664
Q ss_pred hcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccC
Q 015875 272 LDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN 329 (399)
Q Consensus 272 l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~ 329 (399)
. +.++.++..+|.+..+.|++++ || ..+.|.+.+.......+.+++..-.
T Consensus 158 ~-----t~n~rF~ii~n~~~ki~pa~qs--Rc-trfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 158 Y-----TANTRFATISNPPQKIHPAQQS--RC-TRFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred h-----ccceEEEEeccChhhcCchhhc--cc-ccCCCCCCChhhhhhHHHHHHhcch
Confidence 3 4567788889999999999998 88 5566777776666666666665443
No 226
>PRK08181 transposase; Validated
Probab=99.07 E-value=1.9e-09 Score=102.28 Aligned_cols=101 Identities=22% Similarity=0.335 Sum_probs=70.8
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhchh-HHHHHHHHHHHHcCCCEEEEEecCCcccCC
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGGA 249 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~~-~~~v~~~f~~a~~~~p~il~iDEiD~l~~~ 249 (399)
...+++|+||||||||+||.++++++ +..++.++..+++....... .......+... ..+.+|+|||++.+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~- 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK- 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC-
Confidence 34579999999999999999999754 67788888888877543221 11122333333 3456999999998743
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 250 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 250 r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
+...+..++++++...+ . -.+|+|||.+
T Consensus 182 --------~~~~~~~Lf~lin~R~~---~--~s~IiTSN~~ 209 (269)
T PRK08181 182 --------DQAETSVLFELISARYE---R--RSILITANQP 209 (269)
T ss_pred --------CHHHHHHHHHHHHHHHh---C--CCEEEEcCCC
Confidence 45667889999987542 1 2488888874
No 227
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=5.5e-09 Score=101.38 Aligned_cols=144 Identities=14% Similarity=0.161 Sum_probs=104.2
Q ss_pred cHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc-----------------------
Q 015875 146 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------------------- 202 (399)
Q Consensus 146 ~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~----------------------- 202 (399)
+.+..+++...+.. -+.+..+||+||.|+||+++|+++|..+-+.
T Consensus 8 l~~~~~~l~~~~~~------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD 75 (319)
T PRK06090 8 LVPVWQNWKAGLDA------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD 75 (319)
T ss_pred HHHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 45677777777654 2456689999999999999999999865321
Q ss_pred eEEEeccchhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 015875 203 FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 278 (399)
Q Consensus 203 ~i~v~~s~l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 278 (399)
|+.+.... .++.+ +-..+|++.+.+. .....|++||++|.| +.+.++.|+..|++ +.
T Consensus 76 ~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp 136 (319)
T PRK06090 76 LHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLEE-----PA 136 (319)
T ss_pred EEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhcC-----CC
Confidence 22221110 00001 2234455444432 234569999999999 77889999999885 56
Q ss_pred CCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHH
Q 015875 279 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 323 (399)
Q Consensus 279 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~ 323 (399)
.++.+|..|+.++.+-|.+++ |+ ..+.|++|+.++..+.+..
T Consensus 137 ~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 137 PNCLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCeEEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 788999999999999999999 98 7899999999988877754
No 228
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=7.5e-10 Score=104.45 Aligned_cols=126 Identities=26% Similarity=0.404 Sum_probs=86.6
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhC----CC-CCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh-hhh
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLG----ID-PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYV 216 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g----~~-~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~-~~~ 216 (399)
++|++.+++.|.-++-. |........ +. ...++||.||+|||||+||+.+|+.++.||...++..|.. .|+
T Consensus 63 VIGQe~AKKvLsVAVYN---HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYV 139 (408)
T COG1219 63 VIGQEQAKKVLSVAVYN---HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYV 139 (408)
T ss_pred eecchhhhceeeeeehh---HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcccc
Confidence 78888888766444321 222221111 11 1347999999999999999999999999999999988865 588
Q ss_pred chhHH-HHHHHHHHHH----cCCCEEEEEecCCcccCCccCCC---CCCChHHHHHHHHHHHH
Q 015875 217 GEGAR-MVRELFQMAR----SKKACIVFFDEVDAIGGARFDDG---VGGDNEVQRTMLEIVNQ 271 (399)
Q Consensus 217 g~~~~-~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~---~~~~~~~~~~l~~ll~~ 271 (399)
|+.-. .+-.+++.|. ....+||+|||||.+..+....+ .-+...+|.+|+.+++-
T Consensus 140 GEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 140 GEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred chhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 88644 3444555432 23446999999999976543221 12346789999988863
No 229
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.03 E-value=2.4e-09 Score=100.13 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=69.2
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhchhH---HHHHHHHHHHHcCCCEEEEEecCCcccCC
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGA---RMVRELFQMARSKKACIVFFDEVDAIGGA 249 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~~~---~~v~~~f~~a~~~~p~il~iDEiD~l~~~ 249 (399)
.+++|+|+||||||+|+.++|+++ +..++.++..++......... .....+++... ..++|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 489999999999999999999977 678888888888765433211 11223444433 456999999988632
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 250 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 250 r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
+......+.++++.-. ..+..+|.+||..
T Consensus 177 --------s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 177 --------SRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred --------CHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 3344567778887632 2234588899874
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.02 E-value=2.2e-09 Score=104.75 Aligned_cols=124 Identities=19% Similarity=0.292 Sum_probs=80.3
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhchh---HHHHHHHHHHHHcCCCEEEEEecCCcccC
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG---ARMVRELFQMARSKKACIVFFDEVDAIGG 248 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~~---~~~v~~~f~~a~~~~p~il~iDEiD~l~~ 248 (399)
..+++|+||+|||||+||.++|+++ +..++.++..+++....... .......+.... ...+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC
Confidence 3789999999999999999999976 67888888888876543210 011111233332 345999999987632
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-----CCCCccccCCCCcee---EEEecCCCHH
Q 015875 249 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP-----DTLDPALLRPGRLDR---KVEFGLPDLE 315 (399)
Q Consensus 249 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~-----~~ld~al~r~gRf~~---~i~~~~P~~~ 315 (399)
+...+..++.+++.... .+..+|.|||.+ ..+++.+.+ |+.. .+.|.-.|.+
T Consensus 261 ---------t~~~~~~Lf~iin~R~~----~~k~tIiTSNl~~~el~~~~~eri~S--RL~~~~~~i~~~G~d~R 320 (329)
T PRK06835 261 ---------TEFSKSELFNLINKRLL----RQKKMIISTNLSLEELLKTYSERISS--RLLGNFTLLKFYGEDIR 320 (329)
T ss_pred ---------CHHHHHHHHHHHHHHHH----CCCCEEEECCCCHHHHHHHHhHHHHH--HHHcCCEEEEecCcChh
Confidence 46667888888887432 123478888863 224455555 5422 4555444443
No 231
>PF13173 AAA_14: AAA domain
Probab=98.96 E-value=9.1e-09 Score=86.83 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=76.1
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcC--CceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCC
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDD 253 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~--~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~ 253 (399)
+.++|+||.|+|||++++.+++.+. ..++.+++.+.......... +.+.+.........+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~------- 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL------- 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh-------
Confidence 4689999999999999999998876 77888888766543221111 222222222225679999999998
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC----CccccCCCCceeEEEecCCCHHH
Q 015875 254 GVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL----DPALLRPGRLDRKVEFGLPDLES 316 (399)
Q Consensus 254 ~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l----d~al~r~gRf~~~i~~~~P~~~e 316 (399)
+.+...+..+.+. ..++.+|+|++....+ ...+ +||+ ..+++.+.+.+|
T Consensus 74 -----~~~~~~lk~l~d~------~~~~~ii~tgS~~~~l~~~~~~~l--~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 74 -----PDWEDALKFLVDN------GPNIKIILTGSSSSLLSKDIAESL--AGRV-IEIELYPLSFRE 126 (128)
T ss_pred -----ccHHHHHHHHHHh------ccCceEEEEccchHHHhhcccccC--CCeE-EEEEECCCCHHH
Confidence 3455666666552 2355666666554333 2333 3576 578888888766
No 232
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=6.3e-09 Score=103.93 Aligned_cols=141 Identities=21% Similarity=0.319 Sum_probs=92.6
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch-hhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCC
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL-VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDD 253 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l-~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~ 253 (399)
-.++||+||||+|||.||..+|...+.||+.+-.++- ++..-.+.-..++.+|+.|....-++|++|+|+.|..--
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v--- 614 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV--- 614 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc---
Confidence 3479999999999999999999999999999865543 322222233468899999999999999999999985321
Q ss_pred CCCCChHHHHHHHHH-HHHhcCCCCCC-CeEEEEecCCCCCCCc-cccCCCCceeEEEecCCCH-HHHHHHHH
Q 015875 254 GVGGDNEVQRTMLEI-VNQLDGFDARG-NIKVLMATNRPDTLDP-ALLRPGRLDRKVEFGLPDL-ESRTQIFK 322 (399)
Q Consensus 254 ~~~~~~~~~~~l~~l-l~~l~~~~~~~-~v~vI~atn~~~~ld~-al~r~gRf~~~i~~~~P~~-~er~~Il~ 322 (399)
.-+ +...+.+++. +-.+....+.+ +.+|++||.+.+.|.. .+.. .|+..+++|..+. ++-.+++.
T Consensus 615 -pIG-PRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 615 -PIG-PRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred -ccC-chhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 011 2222333332 22333333333 5667777776543322 3444 7888888887654 55555544
No 233
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=5.6e-09 Score=101.92 Aligned_cols=131 Identities=18% Similarity=0.259 Sum_probs=94.4
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCc-------------------------eEEEeccchhhhhhc-----hhHHH
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDAC-------------------------FIRVIGSELVQKYVG-----EGARM 222 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~-------------------------~i~v~~s~l~~~~~g-----~~~~~ 222 (399)
+.+..+||+||+|+|||++|+.+|+.+.+. |+.+....-. ...| -+-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 456789999999999999999999976331 2223221000 0001 12345
Q ss_pred HHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCcccc
Q 015875 223 VRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALL 298 (399)
Q Consensus 223 v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~ 298 (399)
+|++.+.+.. ....|+++|+++.+ +.+.++.++.++++.. .++.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep~-----~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEPP-----PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhCc-----CCCEEEEEeCChHhChHHHH
Confidence 6666665543 34569999999999 8889999999988742 34667888888999999999
Q ss_pred CCCCceeEEEecCCCHHHHHHHHHH
Q 015875 299 RPGRLDRKVEFGLPDLESRTQIFKI 323 (399)
Q Consensus 299 r~gRf~~~i~~~~P~~~er~~Il~~ 323 (399)
+ |+ ..+.|++|+.++..+.|..
T Consensus 162 S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 8 88 8899999999988877654
No 234
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.91 E-value=1.8e-08 Score=92.66 Aligned_cols=183 Identities=19% Similarity=0.318 Sum_probs=99.1
Q ss_pred cCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc---eEEEec-cchh----hhh
Q 015875 144 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVIG-SELV----QKY 215 (399)
Q Consensus 144 ~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~---~i~v~~-s~l~----~~~ 215 (399)
.|.+..++.|.+++.. .+...++|+||.|+|||+|++.+.+..... .+.+.. .... ...
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 5778888888888764 245689999999999999999999977321 111111 1100 000
Q ss_pred -------------h-----------------chhHHHHHHHHHHHHcC-CCEEEEEecCCccc-CCccCCCCCCChHHHH
Q 015875 216 -------------V-----------------GEGARMVRELFQMARSK-KACIVFFDEVDAIG-GARFDDGVGGDNEVQR 263 (399)
Q Consensus 216 -------------~-----------------g~~~~~v~~~f~~a~~~-~p~il~iDEiD~l~-~~r~~~~~~~~~~~~~ 263 (399)
. ......+..+++.+... ...+|+|||++.+. ... .......
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHH
Confidence 0 11223345555555443 23799999999996 211 1345555
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecCCC------CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccC-C-CCccc
Q 015875 264 TMLEIVNQLDGFDARGNIKVLMATNRP------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN-C-ERDIR 335 (399)
Q Consensus 264 ~l~~ll~~l~~~~~~~~v~vI~atn~~------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~-~-~~~~~ 335 (399)
.+..+++.. ....++.+|+++... ..-...+.. |+.. +.+++.+.++..++++....... + ..+.+
T Consensus 143 ~l~~~~~~~---~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~ 216 (234)
T PF01637_consen 143 SLRSLLDSL---LSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDED 216 (234)
T ss_dssp HHHHHHHH-------TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHH
T ss_pred HHHHHHhhc---cccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHH
Confidence 555555542 234555555444331 122233444 7766 99999999999999999877651 1 14556
Q ss_pred HHHHHHHCCCCcHHHHH
Q 015875 336 FELLARLCPNSTGADIR 352 (399)
Q Consensus 336 ~~~la~~~~g~sg~di~ 352 (399)
++.+...+.|. |+.|.
T Consensus 217 ~~~i~~~~gG~-P~~l~ 232 (234)
T PF01637_consen 217 IEEIYSLTGGN-PRYLQ 232 (234)
T ss_dssp HHHHHHHHTT--HHHHH
T ss_pred HHHHHHHhCCC-HHHHh
Confidence 78888888774 43443
No 235
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.1e-09 Score=108.98 Aligned_cols=212 Identities=18% Similarity=0.228 Sum_probs=120.2
Q ss_pred CCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC----CceEEEe-----
Q 015875 137 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVI----- 207 (399)
Q Consensus 137 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~----~~~i~v~----- 207 (399)
...|.||.|++.+++.+.-+... ..++|++||||||||++|+-+..-+. ..+++++
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~ 239 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSL 239 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhh
Confidence 45788999999999998877653 56899999999999999998876431 0001000
Q ss_pred ccchhhh----------hhchhHHHHHHHHH--------HHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHH
Q 015875 208 GSELVQK----------YVGEGARMVRELFQ--------MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 269 (399)
Q Consensus 208 ~s~l~~~----------~~g~~~~~v~~~f~--------~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 269 (399)
...+... ..+.+... ..+.. .......+||||||+-.+ .+.+++.|
T Consensus 240 ~g~~~~~~~~~~~rPFr~PHHsaS~-~aLvGGG~~p~PGeIsLAH~GVLFLDElpef---------------~~~iLe~L 303 (490)
T COG0606 240 AGDLHEGCPLKIHRPFRAPHHSASL-AALVGGGGVPRPGEISLAHNGVLFLDELPEF---------------KRSILEAL 303 (490)
T ss_pred cccccccCccceeCCccCCCccchH-HHHhCCCCCCCCCceeeecCCEEEeeccchh---------------hHHHHHHH
Confidence 0000000 00000000 00000 001122359999997554 33444444
Q ss_pred HH-hcCC-----------CCCCCeEEEEecCCC-----------------------CCCCccccCCCCceeEEEecCCCH
Q 015875 270 NQ-LDGF-----------DARGNIKVLMATNRP-----------------------DTLDPALLRPGRLDRKVEFGLPDL 314 (399)
Q Consensus 270 ~~-l~~~-----------~~~~~v~vI~atn~~-----------------------~~ld~al~r~gRf~~~i~~~~P~~ 314 (399)
.+ |+.- .-..++.+|+++|.- ..+...+++ |+|..++++.++.
T Consensus 304 R~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~ 381 (490)
T COG0606 304 REPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSA 381 (490)
T ss_pred hCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCH
Confidence 33 3211 011246677888841 234456666 9999999998774
Q ss_pred HHHHH--------------HHHHHH----hccCC--CCccc----------------HHHHHHHCCCCcHHHHHHHHHHH
Q 015875 315 ESRTQ--------------IFKIHT----RTMNC--ERDIR----------------FELLARLCPNSTGADIRSVCTEA 358 (399)
Q Consensus 315 ~er~~--------------Il~~~~----~~~~~--~~~~~----------------~~~la~~~~g~sg~di~~l~~~A 358 (399)
.++.. +++.+- +.... ...++ +...+-..-++|.+....+++-|
T Consensus 382 ~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKva 461 (490)
T COG0606 382 GELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVA 461 (490)
T ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 44321 222111 11111 11111 11222333466778888888888
Q ss_pred HHHHHHHcCCCccHHHHHHHHHH
Q 015875 359 GMFAIRARRKTVTEKDFLDAVNK 381 (399)
Q Consensus 359 ~~~A~~~~~~~It~ed~~~ai~~ 381 (399)
...|-.++...|...|+.+|+.-
T Consensus 462 rTiADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 462 RTIADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred hhhhcccCcchhhHHHHHHHHhh
Confidence 88888888899999999999864
No 236
>PRK06526 transposase; Provisional
Probab=98.90 E-value=5.4e-09 Score=98.61 Aligned_cols=101 Identities=23% Similarity=0.341 Sum_probs=66.8
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhchh-HHHHHHHHHHHHcCCCEEEEEecCCcccCC
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGGA 249 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~~-~~~v~~~f~~a~~~~p~il~iDEiD~l~~~ 249 (399)
.+.+++|+||||||||+||.+++.++ +..++.+.+.+++....... .......+... ..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~- 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF- 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC-
Confidence 45689999999999999999999865 56666666666655432111 11112222222 3456999999998733
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 250 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 250 r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
+...+..+.++++.... . ..+|+|||.+
T Consensus 174 --------~~~~~~~L~~li~~r~~---~--~s~IitSn~~ 201 (254)
T PRK06526 174 --------EPEAANLFFQLVSSRYE---R--ASLIVTSNKP 201 (254)
T ss_pred --------CHHHHHHHHHHHHHHHh---c--CCEEEEcCCC
Confidence 45667788888876432 1 2378888875
No 237
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.89 E-value=2.4e-08 Score=104.30 Aligned_cols=196 Identities=14% Similarity=0.102 Sum_probs=128.6
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCC--ceEEEeccchhhhhhchh--HHHHHH---HHH--HHHcCCCEEEEEecCCcc
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQKYVGEG--ARMVRE---LFQ--MARSKKACIVFFDEVDAI 246 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~--~~i~v~~s~l~~~~~g~~--~~~v~~---~f~--~a~~~~p~il~iDEiD~l 246 (399)
.||+|.|++|||||+++++++..+.. ||+.+..+--....+|.. +..++. .++ .......+|||+||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 58999999999999999999998754 777665443333334432 111110 010 011123359999999998
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHh------cCC--CCCCCeEEEEecCCC---CCCCccccCCCCceeEEEecCCCHH
Q 015875 247 GGARFDDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRP---DTLDPALLRPGRLDRKVEFGLPDLE 315 (399)
Q Consensus 247 ~~~r~~~~~~~~~~~~~~l~~ll~~l------~~~--~~~~~v~vI~atn~~---~~ld~al~r~gRf~~~i~~~~P~~~ 315 (399)
+..++..|++-++.- ++. ....++.+|++-|.. ..|+++++. ||+..+.++.|+..
T Consensus 106 -----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~ 172 (584)
T PRK13406 106 -----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLALR 172 (584)
T ss_pred -----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCChH
Confidence 788999999988763 222 123457777764432 458888998 99999999988765
Q ss_pred HHH-------HHHHHH--HhccCCCCcccHHHHHHHC--CCC-cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 316 SRT-------QIFKIH--TRTMNCERDIRFELLARLC--PNS-TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 316 er~-------~Il~~~--~~~~~~~~~~~~~~la~~~--~g~-sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
+.. +|.... +.+..+. +..++.++..+ .|. |.+--..+++.|...|..+++..|+.+|+.+|+.-+.
T Consensus 173 ~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL 251 (584)
T PRK13406 173 DAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVL 251 (584)
T ss_pred HhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 432 233222 2222222 11233333322 254 6677778889999999999999999999999999986
Q ss_pred hh
Q 015875 384 KG 385 (399)
Q Consensus 384 ~~ 385 (399)
.-
T Consensus 252 ~h 253 (584)
T PRK13406 252 AP 253 (584)
T ss_pred Hh
Confidence 43
No 238
>PRK06921 hypothetical protein; Provisional
Probab=98.87 E-value=1.8e-08 Score=95.74 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=64.9
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCc-ccC
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA-IGG 248 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~-l~~ 248 (399)
...+++|+||||+|||+|+.++|+++ +..++.+...+++....... ......+... ....+|+|||++. +.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCC
Confidence 35689999999999999999999975 56677777766655432211 1112222222 3456999999954 212
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 249 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 249 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
.. ..+...+..+..+++.... .+..+|+|||.+
T Consensus 193 ~e-----~~t~~~~~~lf~iin~R~~----~~k~tIitsn~~ 225 (266)
T PRK06921 193 KP-----RATEWQIEQMYSVLNYRYL----NHKPILISSELT 225 (266)
T ss_pred Cc-----cCCHHHHHHHHHHHHHHHH----CCCCEEEECCCC
Confidence 11 0133445678888876432 122367788863
No 239
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.87 E-value=5.6e-09 Score=97.65 Aligned_cols=204 Identities=20% Similarity=0.279 Sum_probs=121.0
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHH------hcCCceEEEeccchhhh---------hhchhHHHHHHHHHHHHcCCC
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVAN------RTDACFIRVIGSELVQK---------YVGEGARMVRELFQMARSKKA 235 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~------~~~~~~i~v~~s~l~~~---------~~g~~~~~v~~~f~~a~~~~p 235 (399)
.+.....+||.||+|.||+.||+-|.. .+..+|+.|||..+.+. ..|.+...-..--...+....
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 345666899999999999999999875 46789999999776432 223322222222223344566
Q ss_pred EEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC--CC----CCCeEEEEecCC--CCCCCccccCCCCcee--
Q 015875 236 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF--DA----RGNIKVLMATNR--PDTLDPALLRPGRLDR-- 305 (399)
Q Consensus 236 ~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~--~~----~~~v~vI~atn~--~~~ld~al~r~gRf~~-- 305 (399)
+++|+|||..++. +-|..++..+++-.-+ .+ ..+.-+|+.|-+ ...+....+|.+.|.+
T Consensus 284 gmlfldeigelga-----------deqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arin 352 (531)
T COG4650 284 GMLFLDEIGELGA-----------DEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARIN 352 (531)
T ss_pred ceEehHhhhhcCc-----------cHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhh
Confidence 7999999999943 3477777777763321 11 234556666643 1223344444444433
Q ss_pred EEEecCCCHHHHHH--------HHHHHHhccCCCCcccHH------HHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCcc
Q 015875 306 KVEFGLPDLESRTQ--------IFKIHTRTMNCERDIRFE------LLARLCPNSTGADIRSVCTEAGMFAIRARRKTVT 371 (399)
Q Consensus 306 ~i~~~~P~~~er~~--------Il~~~~~~~~~~~~~~~~------~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It 371 (399)
...|.+|.+.+|.+ -+..|.+..+-.-..+.+ .++......+.++.+.+.......|.......||
T Consensus 353 lwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~grit 432 (531)
T COG4650 353 LWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSGRIT 432 (531)
T ss_pred eeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCCcee
Confidence 56788888888876 223333322211111111 1111122223346666655555666666888899
Q ss_pred HHHHHHHHHHHHhh
Q 015875 372 EKDFLDAVNKVIKG 385 (399)
Q Consensus 372 ~ed~~~ai~~v~~~ 385 (399)
.+-++.-+......
T Consensus 433 ~~~ve~ei~rlr~~ 446 (531)
T COG4650 433 LDVVEDEINRLRYN 446 (531)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888888776544
No 240
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.86 E-value=2.3e-08 Score=96.88 Aligned_cols=102 Identities=21% Similarity=0.248 Sum_probs=65.8
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhchhH-HHHHHHHHHHHcCCCEEEEEecCCcccCC
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGA-RMVRELFQMARSKKACIVFFDEVDAIGGA 249 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~~~-~~v~~~f~~a~~~~p~il~iDEiD~l~~~ 249 (399)
..+|++|+||+|||||+||.|+|+++ +.++..+..++++........ ......+... ....+|+|||+..-..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e~~- 231 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAEQM- 231 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCccc-
Confidence 45799999999999999999999987 677788888877665432211 1123334333 3445999999976522
Q ss_pred ccCCCCCCChHHHHHH-HHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 250 RFDDGVGGDNEVQRTM-LEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 250 r~~~~~~~~~~~~~~l-~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
+......+ ..+++.-. ..+..+|.|||.+
T Consensus 232 --------s~~~~~~ll~~Il~~R~----~~~~~ti~TSNl~ 261 (306)
T PRK08939 232 --------SSWVRDEVLGVILQYRM----QEELPTFFTSNFD 261 (306)
T ss_pred --------cHHHHHHHHHHHHHHHH----HCCCeEEEECCCC
Confidence 23333234 44555321 1345688999964
No 241
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.85 E-value=2.9e-08 Score=93.67 Aligned_cols=101 Identities=19% Similarity=0.324 Sum_probs=67.9
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhchhHH-HHH-HHHHHHHcCCCEEEEEecCCcccC
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGAR-MVR-ELFQMARSKKACIVFFDEVDAIGG 248 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~~~~-~v~-~~f~~a~~~~p~il~iDEiD~l~~ 248 (399)
.+.+++|+||||+|||+||-|+++++ |..++.+..++++......... ... .+.... ....+|+|||+...-.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~~~ 181 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYEPF 181 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCccC
Confidence 56799999999999999999999976 7788889999988765443322 111 122212 2345999999988632
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 249 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 249 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
+......+++++..... .... |.|+|.+
T Consensus 182 ---------~~~~~~~~~q~I~~r~~---~~~~--~~tsN~~ 209 (254)
T COG1484 182 ---------SQEEADLLFQLISRRYE---SRSL--IITSNLS 209 (254)
T ss_pred ---------CHHHHHHHHHHHHHHHh---hccc--eeecCCC
Confidence 34455666666655331 1222 8888875
No 242
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.83 E-value=5.6e-09 Score=93.32 Aligned_cols=102 Identities=23% Similarity=0.381 Sum_probs=65.7
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhchh-HHHHHHHHHHHHcCCCEEEEEecCCcccC
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGG 248 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~~-~~~v~~~f~~a~~~~p~il~iDEiD~l~~ 248 (399)
..+.+++|+||||||||+||.++++++ +.++..++.++++....... .......+.... ...+|+|||+.....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~~ 122 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEPL 122 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceeee
Confidence 346789999999999999999999865 78888899888877643221 111223344433 335999999976421
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 249 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 249 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
+......+.++++.-.+ + . .+|.|||..
T Consensus 123 ---------~~~~~~~l~~ii~~R~~---~-~-~tIiTSN~~ 150 (178)
T PF01695_consen 123 ---------SEWEAELLFEIIDERYE---R-K-PTIITSNLS 150 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHH---T---EEEEEESS-
T ss_pred ---------cccccccchhhhhHhhc---c-c-CeEeeCCCc
Confidence 45566778888877532 1 2 477799964
No 243
>PRK09183 transposase/IS protein; Provisional
Probab=98.83 E-value=1.7e-08 Score=95.55 Aligned_cols=103 Identities=17% Similarity=0.285 Sum_probs=68.9
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhch-hHHHHHHHHHHHHcCCCEEEEEecCCcccC
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE-GARMVRELFQMARSKKACIVFFDEVDAIGG 248 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~-~~~~v~~~f~~a~~~~p~il~iDEiD~l~~ 248 (399)
....+++|+||||||||+||.+++... +..+..+++.++...+... ....+...+... ...+.+++|||++.+..
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF 178 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC
Confidence 345689999999999999999998753 6677777777776543221 111233344432 24566999999987632
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 249 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 249 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
+.+.+..++++++...+ .. .+|+|||.+
T Consensus 179 ---------~~~~~~~lf~li~~r~~---~~--s~iiTsn~~ 206 (259)
T PRK09183 179 ---------SQEEANLFFQVIAKRYE---KG--SMILTSNLP 206 (259)
T ss_pred ---------ChHHHHHHHHHHHHHHh---cC--cEEEecCCC
Confidence 34556778888876542 22 367888874
No 244
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.82 E-value=2.3e-07 Score=93.52 Aligned_cols=221 Identities=14% Similarity=0.164 Sum_probs=125.0
Q ss_pred CCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc
Q 015875 123 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC 202 (399)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~ 202 (399)
..+....+|++++.|.+.+++.-...-+.++++++.. -..|. .--..+-+||+||+||||||.++.++.++|..
T Consensus 64 ~~~d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~----~~~~~--~~l~~~iLLltGPsGcGKSTtvkvLskelg~~ 137 (634)
T KOG1970|consen 64 EKEDEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQ----VAEFT--PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQ 137 (634)
T ss_pred CCccccchhHHhcCcccHHHHhhhHHhHHHHHHHHHH----HHHhc--cCCCceEEEEeCCCCCCchhHHHHHHHhhCce
Confidence 3456677899999999999999999999999999871 01111 01224569999999999999999999999988
Q ss_pred eEEEeccc-------------hhhhhhchhHHHHHHHHHHH------------HcCCCEEEEEecCCcccCCccCCCCCC
Q 015875 203 FIRVIGSE-------------LVQKYVGEGARMVRELFQMA------------RSKKACIVFFDEVDAIGGARFDDGVGG 257 (399)
Q Consensus 203 ~i~v~~s~-------------l~~~~~g~~~~~v~~~f~~a------------~~~~p~il~iDEiD~l~~~r~~~~~~~ 257 (399)
++.-..+- +........-.........+ ...++.+|++||+=..+...
T Consensus 138 ~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d------- 210 (634)
T KOG1970|consen 138 LIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD------- 210 (634)
T ss_pred eeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-------
Confidence 77765211 11100111001111111111 11345699999987765421
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCeEEEEec-CCCCCCCccccCC------CCceeEEEecCCCHHHHHHHHHHHHhccCC
Q 015875 258 DNEVQRTMLEIVNQLDGFDARGNIKVLMAT-NRPDTLDPALLRP------GRLDRKVEFGLPDLESRTQIFKIHTRTMNC 330 (399)
Q Consensus 258 ~~~~~~~l~~ll~~l~~~~~~~~v~vI~at-n~~~~ld~al~r~------gRf~~~i~~~~P~~~er~~Il~~~~~~~~~ 330 (399)
+.+.++.+++++.. . ....+++|.|- +.++..++..+.+ .|+ ..|.|.+-...-.++.|+..+.....
T Consensus 211 ~~~~f~evL~~y~s---~-g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~ 285 (634)
T KOG1970|consen 211 DSETFREVLRLYVS---I-GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEAN 285 (634)
T ss_pred hHHHHHHHHHHHHh---c-CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcc
Confidence 23333333333322 1 12233333332 2233333322221 244 47788876666666666666554332
Q ss_pred CCc----ccHHHHHHHCCCCcHHHHHHHHHHHHHHH
Q 015875 331 ERD----IRFELLARLCPNSTGADIRSVCTEAGMFA 362 (399)
Q Consensus 331 ~~~----~~~~~la~~~~g~sg~di~~l~~~A~~~A 362 (399)
... -+...+...+.+ +++|||.+++...+.+
T Consensus 286 ~~s~~k~~~~~~v~~i~~~-s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 286 KKSGIKVPDTAEVELICQG-SGGDIRSAINSLQLSS 320 (634)
T ss_pred cccCCcCchhHHHHHHHHh-cCccHHHHHhHhhhhc
Confidence 211 122334444444 3449999999888875
No 245
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.81 E-value=1.9e-08 Score=99.36 Aligned_cols=106 Identities=22% Similarity=0.312 Sum_probs=66.7
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcCC-ceEEEeccchhhhhhchh------HHHHHHHHHHHHcCCCEEEEEecCC
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTDA-CFIRVIGSELVQKYVGEG------ARMVRELFQMARSKKACIVFFDEVD 244 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~~-~~i~v~~s~l~~~~~g~~------~~~v~~~f~~a~~~~p~il~iDEiD 244 (399)
..+|+|++||||+|+|||+|+-.+.+.+.. .-.++.-.+++....... ..-+..+.+.... ...+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 457999999999999999999999987754 223333334433211111 0112222222222 23399999998
Q ss_pred cccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC-CCC
Q 015875 245 AIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP-DTL 293 (399)
Q Consensus 245 ~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~-~~l 293 (399)
-- +..-...|..|++.+- ..++++|+|+|++ +.|
T Consensus 138 V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDL 172 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHH
Confidence 75 4555566667777764 3578899999984 444
No 246
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.79 E-value=5.5e-08 Score=102.05 Aligned_cols=194 Identities=25% Similarity=0.220 Sum_probs=121.1
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEE-EeccchhhhhhchhHHHHHHHH-H----H---HHcCCCEEEEEecCCcc
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIR-VIGSELVQKYVGEGARMVRELF-Q----M---ARSKKACIVFFDEVDAI 246 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~-v~~s~l~~~~~g~~~~~v~~~f-~----~---a~~~~p~il~iDEiD~l 246 (399)
-++||.|.||||||.|.+.+++-+...++. -.++.- .|-++..+++-. . . +...+++|.+|||+|.+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 579999999999999999999866433221 111111 111111111111 0 0 11245679999999999
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEecCCCC-------------CCCccccCCCCcee
Q 015875 247 GGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD-------------TLDPALLRPGRLDR 305 (399)
Q Consensus 247 ~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~~-------------~ld~al~r~gRf~~ 305 (399)
+......+.+.+++-. |+ .-+.++-|+||+|+.. .++++|++ |||.
T Consensus 396 -----------~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDL 462 (682)
T COG1241 396 -----------NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDL 462 (682)
T ss_pred -----------ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCe
Confidence 6777888888887621 11 1123566889999753 46789999 9998
Q ss_pred EEEecC-CCHHHHHH----HHHHHHhcc------------------------------CCCCccc---HHHHH-----HH
Q 015875 306 KVEFGL-PDLESRTQ----IFKIHTRTM------------------------------NCERDIR---FELLA-----RL 342 (399)
Q Consensus 306 ~i~~~~-P~~~er~~----Il~~~~~~~------------------------------~~~~~~~---~~~la-----~~ 342 (399)
.+.+.. |+.+.-.. ++..|.... ...+.+. .+.|. .+
T Consensus 463 ifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~R 542 (682)
T COG1241 463 IFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMR 542 (682)
T ss_pred eEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhh
Confidence 776654 65543323 444442100 0111111 11111 11
Q ss_pred C----------CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhc
Q 015875 343 C----------PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 343 ~----------~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~~ 386 (399)
. .-.|.+++.++++-|...|..+-+..|+.+|+.+|++-+....
T Consensus 543 k~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l 596 (682)
T COG1241 543 KKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSL 596 (682)
T ss_pred hccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHH
Confidence 1 1246799999999999999999999999999999999887544
No 247
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=1e-07 Score=91.00 Aligned_cols=134 Identities=12% Similarity=0.142 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEec--------cchhhhh-hc-
Q 015875 148 EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG--------SELVQKY-VG- 217 (399)
Q Consensus 148 ~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~--------s~l~~~~-~g- 217 (399)
...++|...+.. -+-+..+||+||+|+||+.+|.++|..+-+.--.-.| +++..-. .|
T Consensus 4 ~~~~~L~~~i~~------------~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~ 71 (290)
T PRK05917 4 AAWEALIQRVRD------------QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK 71 (290)
T ss_pred HHHHHHHHHHHc------------CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC
Confidence 345666666654 2446689999999999999999999976442100001 1110000 01
Q ss_pred ---hhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 218 ---EGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 218 ---~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
-+-..+|++.+.+. .....|++||++|.+ +.+.++.|+.+|++ +..++++|..|+.+
T Consensus 72 ~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~m-----------t~~AaNaLLK~LEE-----Pp~~~~fiL~~~~~ 135 (290)
T PRK05917 72 GRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRM-----------TLDAISAFLKVLED-----PPQHGVIILTSAKP 135 (290)
T ss_pred CCcCcHHHHHHHHHHHhhCccCCCceEEEEechhhc-----------CHHHHHHHHHHhhc-----CCCCeEEEEEeCCh
Confidence 01233444444433 244569999999999 78889999999986 56788899999999
Q ss_pred CCCCccccCCCCceeEEEecCC
Q 015875 291 DTLDPALLRPGRLDRKVEFGLP 312 (399)
Q Consensus 291 ~~ld~al~r~gRf~~~i~~~~P 312 (399)
+.+.|.+++ |+ ..+.|+++
T Consensus 136 ~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 136 QRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred hhCcHHHHh--cc-eEEEccch
Confidence 999999999 88 67777764
No 248
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.74 E-value=2.7e-07 Score=94.87 Aligned_cols=195 Identities=23% Similarity=0.220 Sum_probs=115.3
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHH-----HHHHHHHH---HHcCCCEEEEEecCCcc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGAR-----MVRELFQM---ARSKKACIVFFDEVDAI 246 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~-----~v~~~f~~---a~~~~p~il~iDEiD~l 246 (399)
.-+|||+|.||||||.+.+.+++-+....+ .++.. +..+|-+.- ..+++... .-....++-+|||||+|
T Consensus 462 ~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkG--sSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM 538 (804)
T KOG0478|consen 462 DINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKG--SSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKM 538 (804)
T ss_pred cceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCc--cchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhh
Confidence 357999999999999999999986533221 11100 000111000 00111111 11234569999999999
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEecCCC-------------CCCCccccCCCCcee
Q 015875 247 GGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRP-------------DTLDPALLRPGRLDR 305 (399)
Q Consensus 247 ~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~-------------~~ld~al~r~gRf~~ 305 (399)
+...+..|.+.+++-. |+ .-+.+..||+++|+. =.|+|.|++ |||.
T Consensus 539 -----------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDL 605 (804)
T KOG0478|consen 539 -----------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDL 605 (804)
T ss_pred -----------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcE
Confidence 5666788888887621 11 123456799999953 157899999 9988
Q ss_pred EE-EecCCCHHHHHHHHHHH----Hhc----------------------cCCCCcccHH---HHH-----HHC----CC-
Q 015875 306 KV-EFGLPDLESRTQIFKIH----TRT----------------------MNCERDIRFE---LLA-----RLC----PN- 345 (399)
Q Consensus 306 ~i-~~~~P~~~er~~Il~~~----~~~----------------------~~~~~~~~~~---~la-----~~~----~g- 345 (399)
++ -+..||...-+.+..+. ... .++.+.+..+ .+. .+. .|
T Consensus 606 IylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~ 685 (804)
T KOG0478|consen 606 IFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQ 685 (804)
T ss_pred EEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccc
Confidence 55 55667766333322221 110 0011111111 110 011 12
Q ss_pred --CcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 015875 346 --STGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 346 --~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~ 385 (399)
.+++++..+.+.+...|.......+...|+++|+.-....
T Consensus 686 itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~a 727 (804)
T KOG0478|consen 686 ITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLREA 727 (804)
T ss_pred cchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 3568999999999999998899999999999998766443
No 249
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.73 E-value=4.4e-07 Score=92.69 Aligned_cols=229 Identities=19% Similarity=0.138 Sum_probs=134.3
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhH
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGA 220 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~ 220 (399)
-.|-|.+.++.-|.-.+-.-...... ....++..-+|+|.|.||+|||-+.+++++-+....+. ++..- ...|-+.
T Consensus 345 PsIyGhe~VK~GilL~LfGGv~K~a~-eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaS--SaAGLTa 420 (764)
T KOG0480|consen 345 PSIYGHELVKAGILLSLFGGVHKSAG-EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKAS--SAAGLTA 420 (764)
T ss_pred ccccchHHHHhhHHHHHhCCccccCC-CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCccc--ccccceE
Confidence 34677777777665444221111000 22233445579999999999999999999876444322 21110 0001000
Q ss_pred HHHHH--HHH---HH---HcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEE
Q 015875 221 RMVRE--LFQ---MA---RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVL 284 (399)
Q Consensus 221 ~~v~~--~f~---~a---~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI 284 (399)
..+++ -++ .| -..+.+|-+|||||+| +..-|.++.+.+++-. |+ .-+.+..||
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKM-----------d~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIl 489 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKM-----------DVKDQVAIHEAMEQQTISIAKAGVVATLNARTSIL 489 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhccc-----------ChHhHHHHHHHHHhheehheecceEEeecchhhhh
Confidence 00000 000 00 1134569999999999 5556788888887621 11 112245588
Q ss_pred EecCCC-------------CCCCccccCCCCceeE-EEecCCCHHHHHHHHHHHHhccC-CC----C--cccH-------
Q 015875 285 MATNRP-------------DTLDPALLRPGRLDRK-VEFGLPDLESRTQIFKIHTRTMN-CE----R--DIRF------- 336 (399)
Q Consensus 285 ~atn~~-------------~~ld~al~r~gRf~~~-i~~~~P~~~er~~Il~~~~~~~~-~~----~--~~~~------- 336 (399)
+|+|+. =.+++++++ |||.. |-+..|+...-..|-++.+.... +. . ....
T Consensus 490 AAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi 567 (764)
T KOG0480|consen 490 AAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYI 567 (764)
T ss_pred hhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHH
Confidence 899864 146789999 99984 45666877665554444332211 00 0 0000
Q ss_pred ---------------HHHHH-------H--------CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhc
Q 015875 337 ---------------ELLAR-------L--------CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 337 ---------------~~la~-------~--------~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~~ 386 (399)
+.|.. . +...+.+++.++++-+...|...-+..||.+|+++|++-..++.
T Consensus 568 ~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~Si 647 (764)
T KOG0480|consen 568 RYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKKSI 647 (764)
T ss_pred HHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhh
Confidence 11110 0 11346699999999999999888899999999999999886654
No 250
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.65 E-value=3.5e-06 Score=77.91 Aligned_cols=184 Identities=18% Similarity=0.198 Sum_probs=114.3
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCC---ceEEEeccchh-----hhhh----ch--------hHHHHHHHHHHHH-cCCC
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDA---CFIRVIGSELV-----QKYV----GE--------GARMVRELFQMAR-SKKA 235 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~---~~i~v~~s~l~-----~~~~----g~--------~~~~v~~~f~~a~-~~~p 235 (399)
-+.++|+.|+|||+++|++...++. ..+.++...+. ..++ +. .+..-+.+..... ...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 5889999999999999977776532 23344432221 1111 11 1122223333333 3556
Q ss_pred EEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCC------CCceeEEEe
Q 015875 236 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRP------GRLDRKVEF 309 (399)
Q Consensus 236 ~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~------gRf~~~i~~ 309 (399)
-++++||.+.+. .+....+..|.+.-.+....-.++.|+=. .|.+.++.+ -|++-.+++
T Consensus 133 v~l~vdEah~L~-----------~~~le~Lrll~nl~~~~~~~l~ivL~Gqp----~L~~~lr~~~l~e~~~R~~ir~~l 197 (269)
T COG3267 133 VVLMVDEAHDLN-----------DSALEALRLLTNLEEDSSKLLSIVLIGQP----KLRPRLRLPVLRELEQRIDIRIEL 197 (269)
T ss_pred eEEeehhHhhhC-----------hhHHHHHHHHHhhcccccCceeeeecCCc----ccchhhchHHHHhhhheEEEEEec
Confidence 899999999993 33344444444433332222234333322 122222211 377767999
Q ss_pred cCCCHHHHHHHHHHHHhccCCCCc----ccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHH
Q 015875 310 GLPDLESRTQIFKIHTRTMNCERD----IRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFL 376 (399)
Q Consensus 310 ~~P~~~er~~Il~~~~~~~~~~~~----~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~ 376 (399)
++.+.++...+++.+++....... -....+...+.| .|+-+.++|..|...|...+...|+...+.
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 999999999999999987654432 235566777777 778999999999999999999988876653
No 251
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.65 E-value=9.6e-08 Score=93.70 Aligned_cols=190 Identities=24% Similarity=0.256 Sum_probs=107.4
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccc-----h---------hhhhhchhHHHHHHHHHHHHcCCCEEEE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE-----L---------VQKYVGEGARMVRELFQMARSKKACIVF 239 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~-----l---------~~~~~g~~~~~v~~~f~~a~~~~p~il~ 239 (399)
..-++||.|.||||||.|.+.+++-.... +.+++.. | .+.|.-+.. .+-. ...+|++
T Consensus 56 ~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~~gLta~~~~d~~~~~~~leaG-----alvl---ad~Gicc 126 (331)
T PF00493_consen 56 GNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSAAGLTASVSRDPVTGEWVLEAG-----ALVL---ADGGICC 126 (331)
T ss_dssp -S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTCCCCCEEECCCGGTSSECEEE------HHHH---CTTSEEE
T ss_pred cccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCcccCCccceeccccccceeEEeCC-----chhc---ccCceee
Confidence 34589999999999999999887654332 3333322 1 111111111 1112 2345999
Q ss_pred EecCCcccCCccCCCCCCChHHHHHHHHHHHHhcC------C--CCCCCeEEEEecCCCC-------------CCCcccc
Q 015875 240 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG------F--DARGNIKVLMATNRPD-------------TLDPALL 298 (399)
Q Consensus 240 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~------~--~~~~~v~vI~atn~~~-------------~ld~al~ 298 (399)
|||+|.+ +.+....|.+.+++-.- . .-+.++.|++++|+.. .+++.|+
T Consensus 127 IDe~dk~-----------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LL 195 (331)
T PF00493_consen 127 IDEFDKM-----------KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLL 195 (331)
T ss_dssp ECTTTT-------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCH
T ss_pred ecccccc-----------cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhH
Confidence 9999999 56667888888876210 0 1123577999999753 4788999
Q ss_pred CCCCceeEEEe-cCCCHHHHHHHHHHHHhccCCC---------C---ccc-----------------------HHHHHH-
Q 015875 299 RPGRLDRKVEF-GLPDLESRTQIFKIHTRTMNCE---------R---DIR-----------------------FELLAR- 341 (399)
Q Consensus 299 r~gRf~~~i~~-~~P~~~er~~Il~~~~~~~~~~---------~---~~~-----------------------~~~la~- 341 (399)
+ |||..+.+ ..|+.+.-..+.+..++..... . .++ .+.|..
T Consensus 196 S--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~ 273 (331)
T PF00493_consen 196 S--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINY 273 (331)
T ss_dssp C--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHH
T ss_pred h--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHH
Confidence 9 99988765 4466555444444333221100 0 011 111111
Q ss_pred -----H-------CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 015875 342 -----L-------CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 342 -----~-------~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~ 385 (399)
. ....+.+.+..+++-|...|..+-+..|+.+|+..|+.-+...
T Consensus 274 Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~S 329 (331)
T PF00493_consen 274 YVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEES 329 (331)
T ss_dssp HCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHHH
T ss_pred HHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHHhh
Confidence 0 0123557888999999999999999999999999999876543
No 252
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=1.1e-06 Score=84.14 Aligned_cols=144 Identities=14% Similarity=0.187 Sum_probs=95.7
Q ss_pred CcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceE-------EE-ec--------
Q 015875 145 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI-------RV-IG-------- 208 (399)
Q Consensus 145 G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i-------~v-~~-------- 208 (399)
++..+++.++..+.. -+.+..+||+|| +||+++|+.+|..+-+.-- .+ +|
T Consensus 6 ~q~~~~~~L~~~~~~------------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~H 71 (290)
T PRK07276 6 KQPKVFQRFQTILEQ------------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEF 71 (290)
T ss_pred HHHHHHHHHHHHHHc------------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 345677777777764 245668999996 6899999999986533210 00 00
Q ss_pred cchhhhh-hch--hHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCe
Q 015875 209 SELVQKY-VGE--GARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 281 (399)
Q Consensus 209 s~l~~~~-~g~--~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 281 (399)
+++..-. .|. .-..+|++...+. .....|++||++|.| +.+..+.|+..|++ +..++
T Consensus 72 PD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLEE-----Pp~~t 135 (290)
T PRK07276 72 SDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-----------HVNAANSLLKVIEE-----PQSEI 135 (290)
T ss_pred CCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-----------CHHHHHHHHHHhcC-----CCCCe
Confidence 1110000 011 2234555554443 234569999999999 67788899888885 55678
Q ss_pred EEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHH
Q 015875 282 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK 322 (399)
Q Consensus 282 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~ 322 (399)
++|..|+.++.+-|.+++ |+ ..+.|+. +.++..+++.
T Consensus 136 ~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 136 YIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 899999999999999999 98 7888865 5555445543
No 253
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.62 E-value=5.7e-07 Score=83.57 Aligned_cols=126 Identities=21% Similarity=0.297 Sum_probs=79.5
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCC
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDG 254 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~ 254 (399)
..+..++||+|||||.+++.+|+.+|.+++..+|++-+. ...+.++|.-+... .+.++|||++.+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-------- 96 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-------- 96 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS--------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh--------
Confidence 457789999999999999999999999999999988653 23445555443332 359999999999
Q ss_pred CCCChHHHHHHHHHHHHhc----C-----------CCCCCCeEEEEecCC----CCCCCccccCCCCceeEEEecCCCHH
Q 015875 255 VGGDNEVQRTMLEIVNQLD----G-----------FDARGNIKVLMATNR----PDTLDPALLRPGRLDRKVEFGLPDLE 315 (399)
Q Consensus 255 ~~~~~~~~~~l~~ll~~l~----~-----------~~~~~~v~vI~atn~----~~~ld~al~r~gRf~~~i~~~~P~~~ 315 (399)
+.++...+.+.+..+. . +.-+.++.+.+|.|+ ...+++.++. .| |.+.+..||..
T Consensus 97 ---~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~ 170 (231)
T PF12774_consen 97 ---SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLS 170 (231)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HH
T ss_pred ---hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHH
Confidence 6777766666555431 1 011223445556663 3578888876 66 89999999988
Q ss_pred HHHHHH
Q 015875 316 SRTQIF 321 (399)
Q Consensus 316 er~~Il 321 (399)
...+++
T Consensus 171 ~I~ei~ 176 (231)
T PF12774_consen 171 LIAEIL 176 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766643
No 254
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.61 E-value=1.6e-07 Score=78.84 Aligned_cols=72 Identities=21% Similarity=0.326 Sum_probs=48.2
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc--------CCceEEEeccchhh------hh--------h--chhHHHHHHHHHHH
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT--------DACFIRVIGSELVQ------KY--------V--GEGARMVRELFQMA 230 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~--------~~~~i~v~~s~l~~------~~--------~--g~~~~~v~~~f~~a 230 (399)
.+.++++||||+|||++++.+++.. ..+++.++++.... .. . .........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4579999999999999999999976 67778887654331 10 1 12233444555555
Q ss_pred HcCCCEEEEEecCCcc
Q 015875 231 RSKKACIVFFDEVDAI 246 (399)
Q Consensus 231 ~~~~p~il~iDEiD~l 246 (399)
......+|+|||+|.+
T Consensus 84 ~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHCTEEEEEEETTHHH
T ss_pred HhcCCeEEEEeChHhc
Confidence 5555569999999997
No 255
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=5e-06 Score=80.20 Aligned_cols=140 Identities=10% Similarity=0.051 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc-------------eEEEeccchhhh
Q 015875 148 EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------------FIRVIGSELVQK 214 (399)
Q Consensus 148 ~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~-------------~i~v~~s~l~~~ 214 (399)
.+++.++..+.. -+-+...||+|+.|.||+.+|+.+++.+-|. ++.++.. +.
T Consensus 3 ~~~~~l~~~i~~------------~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~ 67 (299)
T PRK07132 3 NWIKFLDNSATQ------------NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DK 67 (299)
T ss_pred hHHHHHHHHHHh------------CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CC
Confidence 455666666653 1234578899999999999999999986321 2222200 00
Q ss_pred hhchhHHHHHHHHHHHHc-----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 215 YVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 215 ~~g~~~~~v~~~f~~a~~-----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
. -.-..++.+.+.+.. ....|++||++|.+ +...++.|+..|++ +..++.+|..|+.
T Consensus 68 ~--i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m-----------~~~a~NaLLK~LEE-----Pp~~t~~il~~~~ 129 (299)
T PRK07132 68 D--LSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKT-----------SNSLLNALLKTIEE-----PPKDTYFLLTTKN 129 (299)
T ss_pred c--CCHHHHHHHHHHhccCCcccCCceEEEEeccccc-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCC
Confidence 0 112344555544421 35679999999998 66778888888875 4567778888878
Q ss_pred CCCCCccccCCCCceeEEEecCCCHHHHHHHHHH
Q 015875 290 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 323 (399)
Q Consensus 290 ~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~ 323 (399)
++.+-+.+++ |+ ..++|++|+.++..+.|..
T Consensus 130 ~~kll~TI~S--Rc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 130 INKVLPTIVS--RC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred hHhChHHHHh--Ce-EEEECCCCCHHHHHHHHHH
Confidence 8899999998 88 7899999998888776654
No 256
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.7e-06 Score=81.03 Aligned_cols=121 Identities=7% Similarity=0.041 Sum_probs=83.3
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEec--------------cchhhhh-h--chhHHHHHHHHHHHHc---
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG--------------SELVQKY-V--GEGARMVRELFQMARS--- 232 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~--------------s~l~~~~-~--g~~~~~v~~~f~~a~~--- 232 (399)
.+|...||+||+|+||..+|.++|..+-+.--.-.| +++..-+ . .-....++++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467789999999999999999999865322000001 1110000 0 0122334444443321
Q ss_pred --CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEec
Q 015875 233 --KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 310 (399)
Q Consensus 233 --~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~ 310 (399)
....|++|+++|.+ +.+..+.|+.+|++ +..++++|..|+.++.+.|.+++ |+ ..+.|+
T Consensus 85 e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LEE-----Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-----------NKQSANSLLKLIEE-----PPKNTYGIFTTRNENNILNTILS--RC-VQYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEECChHhCchHhhh--he-eeeecC
Confidence 23579999999999 77888999998885 67788999999999999999999 88 556777
Q ss_pred CC
Q 015875 311 LP 312 (399)
Q Consensus 311 ~P 312 (399)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 66
No 257
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.54 E-value=2.4e-07 Score=88.41 Aligned_cols=139 Identities=22% Similarity=0.373 Sum_probs=77.1
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCC-c--eEEEeccchhhhhhchhHHHHHHHHHHH-----------HcCCCEEEE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDA-C--FIRVIGSELVQKYVGEGARMVRELFQMA-----------RSKKACIVF 239 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~-~--~i~v~~s~l~~~~~g~~~~~v~~~f~~a-----------~~~~p~il~ 239 (399)
..+++||.||+|||||++++..-..+.. . ...++++.. .....+..+.+.. ..+...|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 3568999999999999999998876543 2 233444322 1222333222211 113346999
Q ss_pred EecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC-C-------CCCCeEEEEecCCC---CCCCccccCCCCceeEEE
Q 015875 240 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF-D-------ARGNIKVLMATNRP---DTLDPALLRPGRLDRKVE 308 (399)
Q Consensus 240 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~-~-------~~~~v~vI~atn~~---~~ld~al~r~gRf~~~i~ 308 (399)
|||+..-..+.. +.....+.|-++++.- ++ + .-.++.+|+|+++. ..+++.++| .| .++.
T Consensus 106 iDDlN~p~~d~y-----gtq~~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~ 176 (272)
T PF12775_consen 106 IDDLNMPQPDKY-----GTQPPIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILN 176 (272)
T ss_dssp EETTT-S---TT-----S--HHHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE
T ss_pred ecccCCCCCCCC-----CCcCHHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEE
Confidence 999987644321 1222233333333321 11 1 11367888988864 246778887 66 7899
Q ss_pred ecCCCHHHHHHHHHHHHhc
Q 015875 309 FGLPDLESRTQIFKIHTRT 327 (399)
Q Consensus 309 ~~~P~~~er~~Il~~~~~~ 327 (399)
++.|+.++...|+...+..
T Consensus 177 ~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ----TCCHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHhh
Confidence 9999999988887766653
No 258
>PF05729 NACHT: NACHT domain
Probab=98.52 E-value=2.2e-06 Score=74.51 Aligned_cols=140 Identities=15% Similarity=0.198 Sum_probs=76.7
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcC---------CceEEEeccchhhhh------------hchhHHHHHH-HHHHHHcCC
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTD---------ACFIRVIGSELVQKY------------VGEGARMVRE-LFQMARSKK 234 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~---------~~~i~v~~s~l~~~~------------~g~~~~~v~~-~f~~a~~~~ 234 (399)
-++|+|+||+|||++++.++..+. ..++.+.+.+..... .......... ....+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999998541 112233332222110 0111111111 122233456
Q ss_pred CEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC--CCccccCCCCceeEEEecCC
Q 015875 235 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT--LDPALLRPGRLDRKVEFGLP 312 (399)
Q Consensus 235 p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~--ld~al~r~gRf~~~i~~~~P 312 (399)
..+++||.+|.+...... .........+.+++.. ....++.+|.+++.... +...+.. ...++++..
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCC
Confidence 679999999999653211 0011222333344432 12345667766654322 2222222 156889989
Q ss_pred CHHHHHHHHHHHHhc
Q 015875 313 DLESRTQIFKIHTRT 327 (399)
Q Consensus 313 ~~~er~~Il~~~~~~ 327 (399)
+.+++.++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999888753
No 259
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.50 E-value=7.5e-07 Score=77.02 Aligned_cols=110 Identities=21% Similarity=0.331 Sum_probs=64.8
Q ss_pred eeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhh------------------------hchhHHHHHHHHHHH
Q 015875 178 VLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------------------------VGEGARMVRELFQMA 230 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~------------------------~g~~~~~v~~~f~~a 230 (399)
++|+||||+|||+++..++... +.+.+.++........ ..............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998875 4566666554332210 000111122234455
Q ss_pred HcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 231 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 231 ~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
....+.+++|||+..+.........+.+....+.+..+++... ..++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 6678889999999988543211001113344455555555543 34667777776543
No 260
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.48 E-value=6.8e-06 Score=93.39 Aligned_cols=178 Identities=22% Similarity=0.303 Sum_probs=102.0
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCce---EEEecc---
Q 015875 136 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF---IRVIGS--- 209 (399)
Q Consensus 136 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~---i~v~~s--- 209 (399)
+...+++++|.+..++++...+.. .....+.+-|+|++|+||||||+++++.....| +.++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc
Confidence 455678899999999999988753 234456799999999999999999988764332 111110
Q ss_pred ---chhhh-----h---hchhHHHHHH-------------HHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHH
Q 015875 210 ---ELVQK-----Y---VGEGARMVRE-------------LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 265 (399)
Q Consensus 210 ---~l~~~-----~---~g~~~~~v~~-------------~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l 265 (399)
+.... + .......+.. ..+..-...+.+|+||+++.. .....+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------~~l~~L 314 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------DVLDAL 314 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-------------HHHHHH
Confidence 00000 0 0000000111 111112345679999998653 111222
Q ss_pred HHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCccc----HHHHHH
Q 015875 266 LEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIR----FELLAR 341 (399)
Q Consensus 266 ~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~----~~~la~ 341 (399)
. ...+.+ ..+..||+||..... .+....++.++++.|+.++-.++|..++-+....+ .+ ...++.
T Consensus 315 ~---~~~~~~--~~GsrIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~ 383 (1153)
T PLN03210 315 A---GQTQWF--GSGSRIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVAL 383 (1153)
T ss_pred H---hhCccC--CCCcEEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH
Confidence 1 111211 224457778875432 22224567889999999999999988774433221 12 234667
Q ss_pred HCCCCcH
Q 015875 342 LCPNSTG 348 (399)
Q Consensus 342 ~~~g~sg 348 (399)
.+.|..-
T Consensus 384 ~c~GLPL 390 (1153)
T PLN03210 384 RAGNLPL 390 (1153)
T ss_pred HhCCCcH
Confidence 7777654
No 261
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.48 E-value=1.3e-05 Score=76.51 Aligned_cols=168 Identities=21% Similarity=0.242 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHh--cCCc---eEEEeccc------hhhh-
Q 015875 147 KEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR--TDAC---FIRVIGSE------LVQK- 214 (399)
Q Consensus 147 ~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~--~~~~---~i~v~~s~------l~~~- 214 (399)
+..+++|.+.+... -...+.|.|+|++|+|||+||+.+++. .... .+.++.+. +...
T Consensus 2 e~~~~~l~~~L~~~-----------~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDN-----------SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTT-----------TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCC-----------CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 45667777766541 145667999999999999999999987 3322 22333221 1111
Q ss_pred --hh----------chhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeE
Q 015875 215 --YV----------GEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 282 (399)
Q Consensus 215 --~~----------g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 282 (399)
.. .........+.+. -...+++|+||+++.. . .+..+...+.. ...+..
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~-L~~~~~LlVlDdv~~~------------~----~~~~l~~~~~~--~~~~~k 131 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLREL-LKDKRCLLVLDDVWDE------------E----DLEELREPLPS--FSSGSK 131 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHH-HCCTSEEEEEEEE-SH------------H----HH-------HC--HHSS-E
T ss_pred cccccccccccccccccccccccchhh-hccccceeeeeeeccc------------c----ccccccccccc--cccccc
Confidence 00 0122333334433 3445899999998765 1 11112221111 123567
Q ss_pred EEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCC----CCcccHHHHHHHCCCCcH
Q 015875 283 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC----ERDIRFELLARLCPNSTG 348 (399)
Q Consensus 283 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~----~~~~~~~~la~~~~g~sg 348 (399)
||.||...... ...- .-...++++..+.++-.++|......... ........++..+.|..-
T Consensus 132 ilvTTR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 197 (287)
T PF00931_consen 132 ILVTTRDRSVA-GSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPL 197 (287)
T ss_dssp EEEEESCGGGG-TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HH
T ss_pred ccccccccccc-cccc---ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88888764311 1111 11468999999999999999988755441 112235688899977443
No 262
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.43 E-value=4.5e-07 Score=80.61 Aligned_cols=59 Identities=29% Similarity=0.478 Sum_probs=38.8
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc---eEEEeccch
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVIGSEL 211 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~---~i~v~~s~l 211 (399)
++|.+++++++...+.. .. ...++.++|+|++|+|||++++.+...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~---------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQ---------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TS---------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HH---------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 68999999999998852 22 2456789999999999999999998865332 677666554
No 263
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.40 E-value=8.6e-06 Score=76.91 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=81.5
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhch----
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGE---- 218 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~---- 218 (399)
|.|+.-+++.+...+...+.++. -..|-.+=|||+|||||.++++.||+.+-..- -.|.++..|+..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLHFP 154 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhccCC
Confidence 88999888888888876544421 12344566889999999999999998651110 123333333322
Q ss_pred --------hHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHH---hcCCCCCCCeEEEEec
Q 015875 219 --------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ---LDGFDARGNIKVLMAT 287 (399)
Q Consensus 219 --------~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~---l~~~~~~~~v~vI~at 287 (399)
..+.-..+.+.++.++.++.++||+|.| ++.....+.-+|+. .++.+. .+.++|.-+
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~f-rkaIFIfLS 222 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVDF-RKAIFIFLS 222 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc-----------CHhHHHHHhhhhccccccccccc-cceEEEEEc
Confidence 1223334555666788889999999999 77777777777764 333333 345566666
Q ss_pred CC
Q 015875 288 NR 289 (399)
Q Consensus 288 n~ 289 (399)
|.
T Consensus 223 N~ 224 (344)
T KOG2170|consen 223 NA 224 (344)
T ss_pred CC
Confidence 64
No 264
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.40 E-value=2.1e-06 Score=82.87 Aligned_cols=105 Identities=18% Similarity=0.269 Sum_probs=64.3
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcCCce-EEEeccchhhhh-------hchhHHHHHHHHHHHHcCCCEEEEEecC
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTDACF-IRVIGSELVQKY-------VGEGARMVRELFQMARSKKACIVFFDEV 243 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~~~~-i~v~~s~l~~~~-------~g~~~~~v~~~f~~a~~~~p~il~iDEi 243 (399)
..+++|++|||+-|+|||+|.-...+.+...- .++....++... .|+. .-+..+-.... ....+|+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELA-AETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEEEeeee
Confidence 45789999999999999999999998764432 223222333221 1221 01111111111 22349999999
Q ss_pred CcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC-CCCC
Q 015875 244 DAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-PDTL 293 (399)
Q Consensus 244 D~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~-~~~l 293 (399)
+-- +..-...+.+|++.|- ..+|.+++|+|. |+.|
T Consensus 140 ~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 140 EVT-----------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNL 175 (367)
T ss_pred eec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHh
Confidence 763 4555566678888765 347889999997 3444
No 265
>PF14516 AAA_35: AAA-like domain
Probab=98.40 E-value=4.3e-05 Score=75.05 Aligned_cols=188 Identities=12% Similarity=0.095 Sum_probs=107.9
Q ss_pred cCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhch--
Q 015875 144 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE-- 218 (399)
Q Consensus 144 ~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~-- 218 (399)
+....+-+++.+.+. .++.-+.|+||..+|||++...+.+.+ +...+.+++..+.......
T Consensus 14 i~R~~~e~~~~~~i~--------------~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 14 IERPPAEQECYQEIV--------------QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred cCchHHHHHHHHHHh--------------cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHH
Confidence 334445556665554 356679999999999999999988754 6777778776542210000
Q ss_pred -----------------------------hHHHHHHHHHH---HHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHH
Q 015875 219 -----------------------------GARMVRELFQM---ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML 266 (399)
Q Consensus 219 -----------------------------~~~~v~~~f~~---a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~ 266 (399)
........|+. .....|-||+|||||.+... ......++
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~---------~~~~~dF~ 150 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY---------PQIADDFF 150 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccC---------cchHHHHH
Confidence 00111122222 12256889999999999652 23334455
Q ss_pred HHHHHhcCC----CCCCCeEEEEecCC-CCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHH
Q 015875 267 EIVNQLDGF----DARGNIKVLMATNR-PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLAR 341 (399)
Q Consensus 267 ~ll~~l~~~----~~~~~v~vI~atn~-~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~ 341 (399)
.+|+....- ....++.+|++... +......-.+|-.+...+.++.-+.++...+++.+-.. ..... ++.+-.
T Consensus 151 ~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~~-~~~l~~ 227 (331)
T PF14516_consen 151 GLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQEQ-LEQLMD 227 (331)
T ss_pred HHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHHH-HHHHHH
Confidence 555543221 11234444444432 22222222355456668888888999998888877533 22222 778888
Q ss_pred HCCCCcHHHHHHHHHHH
Q 015875 342 LCPNSTGADIRSVCTEA 358 (399)
Q Consensus 342 ~~~g~sg~di~~l~~~A 358 (399)
.+.|. |.=++.+|...
T Consensus 228 ~tgGh-P~Lv~~~~~~l 243 (331)
T PF14516_consen 228 WTGGH-PYLVQKACYLL 243 (331)
T ss_pred HHCCC-HHHHHHHHHHH
Confidence 88774 43455555443
No 266
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.40 E-value=1.4e-06 Score=94.23 Aligned_cols=212 Identities=17% Similarity=0.225 Sum_probs=134.3
Q ss_pred ccceecCCCCccccccCcHHHHHHHHHHHhcCCC-ChhHHHhhCCCCCC--ceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 129 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPML-HPEKFVKLGIDPPK--GVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 129 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~-~~~~~~~~g~~~~~--~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
..|.+++.+....++.|.......+.+++...-. .+..|...+-.... .++++||||+|||+.+.++|..++..++.
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 4677788888878888877777788877765311 11222222211111 36999999999999999999999999999
Q ss_pred Eeccchhhhhh-----ch--hHHHHHHHHH---H--HHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc
Q 015875 206 VIGSELVQKYV-----GE--GARMVRELFQ---M--ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 273 (399)
Q Consensus 206 v~~s~l~~~~~-----g~--~~~~v~~~f~---~--a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~ 273 (399)
.|.+...++.. |+ ....+...+. . .......||+|||+|.+.+. +......+..+..
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~--------dRg~v~~l~~l~~--- 456 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE--------DRGGVSKLSSLCK--- 456 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch--------hhhhHHHHHHHHH---
Confidence 99987665432 11 1112222220 0 01122339999999999651 3444455555554
Q ss_pred CCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHH
Q 015875 274 GFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIR 352 (399)
Q Consensus 274 ~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~ 352 (399)
.....+|+++|.........+. |.+..+.|+.|+...+..-+...+....+. .+-.++.+...+ ++||+
T Consensus 457 ----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR 526 (871)
T KOG1968|consen 457 ----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIR 526 (871)
T ss_pred ----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHH
Confidence 2334588899887655554444 666789999999999888666665543332 222355555555 55888
Q ss_pred HHHHHHHHH
Q 015875 353 SVCTEAGMF 361 (399)
Q Consensus 353 ~l~~~A~~~ 361 (399)
+++....+.
T Consensus 527 ~~i~~lq~~ 535 (871)
T KOG1968|consen 527 QIIMQLQFW 535 (871)
T ss_pred HHHHHHhhh
Confidence 877666555
No 267
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.36 E-value=1.9e-06 Score=78.69 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=67.6
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhh-----------------------chhHHHHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV-----------------------GEGARMVR 224 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~-----------------------g~~~~~v~ 224 (399)
|++...-++|+||||+|||+++..++... +...+.++..++..... .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 77888889999999999999999988643 56677777765211100 00111233
Q ss_pred HHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 225 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 225 ~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
.+...+....+++|+||-+..+......+. .....+.+.+++..+..+....++.+|++..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~~---~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSDD---RISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCCc---cHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 444445556789999999998853211111 1122223333333333333355676777654
No 268
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.31 E-value=6.3e-06 Score=82.44 Aligned_cols=225 Identities=18% Similarity=0.183 Sum_probs=129.0
Q ss_pred cccCcHHHHHHHHHHHhcCCCC-hhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEe-ccchhhhhhchh
Q 015875 142 DVGGCKEQIEKMREVVELPMLH-PEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI-GSELVQKYVGEG 219 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~-~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~-~s~l~~~~~g~~ 219 (399)
+|-|.+++++.|.-.+...... +. ...-++..-+|+|.|.||+.||-|.+++.+-.....+..- +| .-+|-+
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~--dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS----SGVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPG--DGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS----SGVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCC--CCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC----Cccccc
Confidence 3778888888776665542111 10 0011223347999999999999999999986543333221 11 112222
Q ss_pred HHHHHH-HHHH-------HHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEE
Q 015875 220 ARMVRE-LFQM-------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKV 283 (399)
Q Consensus 220 ~~~v~~-~f~~-------a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~v 283 (399)
+...++ +-.. .-....+|-+|||||++. ..-.-.+-+++++-. |+ .-+.++.|
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~-----------e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sI 485 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMD-----------ESDRTAIHEVMEQQTISIAKAGINTTLNARTSI 485 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhh-----------hhhhHHHHHHHHhhhhhhhhhccccchhhhHHh
Confidence 222221 0000 011345699999999993 222334445554410 11 12345678
Q ss_pred EEecCCC-------------CCCCccccCCCCceeEE-EecCCCHHHHHHHHHHHH--hccCCCC-----cccHHHH---
Q 015875 284 LMATNRP-------------DTLDPALLRPGRLDRKV-EFGLPDLESRTQIFKIHT--RTMNCER-----DIRFELL--- 339 (399)
Q Consensus 284 I~atn~~-------------~~ld~al~r~gRf~~~i-~~~~P~~~er~~Il~~~~--~~~~~~~-----~~~~~~l--- 339 (399)
++|+|+. -.|+++|++ |||..+ -...|+.+.-..+.++.. ...+..+ .++++.+
T Consensus 486 LaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~y 563 (721)
T KOG0482|consen 486 LAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRY 563 (721)
T ss_pred hhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHH
Confidence 8888863 257889999 999844 444577665555443322 1111111 1221111
Q ss_pred ---------------HH-------------HC----CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 015875 340 ---------------AR-------------LC----PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 340 ---------------a~-------------~~----~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~ 385 (399)
+. .. ...|++.+-.+++.+...|..+-...|..+|+.+|++-+.-+
T Consensus 564 I~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~s 641 (721)
T KOG0482|consen 564 ISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMS 641 (721)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhh
Confidence 00 01 134789999999999999999999999999999999987543
No 269
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.30 E-value=5.9e-06 Score=84.25 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=57.6
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhh------ch--------hHHHHHHHHHHHHcC
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV------GE--------GARMVRELFQMARSK 233 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~------g~--------~~~~v~~~f~~a~~~ 233 (399)
|+.+...++|+|+||+|||+|+..++... +..+++++..+-..... |. .+..+..+++.+...
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 77888889999999999999999998754 56778887765433211 11 011244566666667
Q ss_pred CCEEEEEecCCcccCCc
Q 015875 234 KACIVFFDEVDAIGGAR 250 (399)
Q Consensus 234 ~p~il~iDEiD~l~~~r 250 (399)
.|.+|+||.+..+....
T Consensus 156 ~~~lVVIDSIq~l~~~~ 172 (446)
T PRK11823 156 KPDLVVIDSIQTMYSPE 172 (446)
T ss_pred CCCEEEEechhhhcccc
Confidence 88999999999986543
No 270
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.27 E-value=5.6e-06 Score=80.87 Aligned_cols=188 Identities=17% Similarity=0.223 Sum_probs=102.4
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhC-CCCCCceeEeCCCCCcHHHHHHHHHHhcCCce--EEEeccchhhhhhchh
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLG-IDPPKGVLCYGPPGTGKTLLARAVANRTDACF--IRVIGSELVQKYVGEG 219 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g-~~~~~~vLL~GppGtGKT~larala~~~~~~~--i~v~~s~l~~~~~g~~ 219 (399)
..+....+..+++..+.-.. ......+ -.+|+|++|||.-|||||+|.-.+...+.... -++...+++...-...
T Consensus 83 ~~e~~r~i~~l~k~~~~~k~--~~~~a~~~~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~ 160 (467)
T KOG2383|consen 83 KREEGRWIFELKKSFDDGKL--DTPNASGQPGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRM 160 (467)
T ss_pred chhhhhHHHHHHHHHhccCC--CCcccccCCCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHH
Confidence 33333455666665543211 1111111 24699999999999999999998886542211 0111222222110000
Q ss_pred HH-------------------HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 015875 220 AR-------------------MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 280 (399)
Q Consensus 220 ~~-------------------~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 280 (399)
.. -+.-+-+.. ....++|++||+.-- +-.-.-.|.+|+..+- ..+
T Consensus 161 H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI-a~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~G 224 (467)
T KOG2383|consen 161 HELKQEQGAEKPGYAKSWEIDPLPVVADEI-AEEAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNG 224 (467)
T ss_pred HHHHHhccccCccccccccCCccHHHHHHH-hhhceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCC
Confidence 00 000111111 123469999999865 5555666778887765 348
Q ss_pred eEEEEecCC-CCCCCc-cccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCC---CC-cHHHHHHH
Q 015875 281 IKVLMATNR-PDTLDP-ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCP---NS-TGADIRSV 354 (399)
Q Consensus 281 v~vI~atn~-~~~ld~-al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~---g~-sg~di~~l 354 (399)
|++++|+|+ |+.|.. .+.|. -| + --..+|+.++.-..+...+|+...+.-.. .+ +..|+..+
T Consensus 225 vVlvATSNR~P~dLYknGlQR~-~F-----~------PfI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~ 292 (467)
T KOG2383|consen 225 VVLVATSNRAPEDLYKNGLQRE-NF-----I------PFIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETV 292 (467)
T ss_pred eEEEEeCCCChHHHhhcchhhh-hh-----h------hHHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHH
Confidence 889999998 455443 33331 22 2 23457778887777778888874333221 12 33477777
Q ss_pred HHHHHH
Q 015875 355 CTEAGM 360 (399)
Q Consensus 355 ~~~A~~ 360 (399)
+++-..
T Consensus 293 l~~~fk 298 (467)
T KOG2383|consen 293 LKEWFK 298 (467)
T ss_pred HHHHHH
Confidence 777654
No 271
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.27 E-value=7.4e-05 Score=75.19 Aligned_cols=126 Identities=13% Similarity=0.156 Sum_probs=77.2
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccC
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFD 252 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~ 252 (399)
.++ .++|+||.+||||++++.+.......++.++..++....... ......+..+.......||||||+.+
T Consensus 36 ~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v------ 106 (398)
T COG1373 36 RPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV------ 106 (398)
T ss_pred CCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc------
Confidence 444 899999999999999999988775556777666654433221 11112222222224469999999997
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHH
Q 015875 253 DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQ 319 (399)
Q Consensus 253 ~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~ 319 (399)
++++..+..+.+... . ++++.+++...-....+-.-+||. ..+++.+.+..|...
T Consensus 107 ------~~W~~~lk~l~d~~~----~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 ------PDWERALKYLYDRGN----L-DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ------hhHHHHHHHHHcccc----c-eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 567777777665321 1 343333332221112222235785 788888889998865
No 272
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.25 E-value=1.6e-05 Score=79.26 Aligned_cols=193 Identities=18% Similarity=0.208 Sum_probs=94.8
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCC-ceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCcc
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDA-CFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARF 251 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~-~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~ 251 (399)
....++++.||+|||||+++.+++....+ .--.++...|+..... ..+. .-..+.+|+|||+..+.-.+
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~~-------~~lg--~v~~~DlLI~DEvgylp~~~- 276 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIST-------RQIG--LVGRWDVVAFDEVATLKFAK- 276 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHHH-------HHHh--hhccCCEEEEEcCCCCcCCc-
Confidence 45678999999999999999998876211 0012223333322111 1111 12445699999999864322
Q ss_pred CCCCCCChHHHHHHHHHHHHhc---C---CCCCCCeEEEEecCCC-----------CCCC-----ccccCCCCcee---E
Q 015875 252 DDGVGGDNEVQRTMLEIVNQLD---G---FDARGNIKVLMATNRP-----------DTLD-----PALLRPGRLDR---K 306 (399)
Q Consensus 252 ~~~~~~~~~~~~~l~~ll~~l~---~---~~~~~~v~vI~atn~~-----------~~ld-----~al~r~gRf~~---~ 306 (399)
..+....|..-++.-. + ......+++++-+|.+ ..++ .|++. ||.. -
T Consensus 277 ------~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~DsAflD--RiH~yiPG 348 (449)
T TIGR02688 277 ------PKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMRDSAFLD--RIHGYLPG 348 (449)
T ss_pred ------hHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCCcchhhcCcccccccCChhhhhhHHHH--hhhccCCC
Confidence 4455566665554311 0 1112223344433321 1122 23333 3321 1
Q ss_pred EEecCCCHHHH-------HHHHHHHHhccCCCCcccH----HHHHHHCCCCcHHHHHHHHHHHHHHH-HHHcCCCccHHH
Q 015875 307 VEFGLPDLESR-------TQIFKIHTRTMNCERDIRF----ELLARLCPNSTGADIRSVCTEAGMFA-IRARRKTVTEKD 374 (399)
Q Consensus 307 i~~~~P~~~er-------~~Il~~~~~~~~~~~~~~~----~~la~~~~g~sg~di~~l~~~A~~~A-~~~~~~~It~ed 374 (399)
.++|....+-. .+.|...++.+. ..++ +.......+.+.+|..++-+..--+. +.--...+|.+|
T Consensus 349 Weipk~~~e~~t~~yGl~~DylsE~l~~lR---~~~~~~~~~~~~~l~~~~~~RD~~aV~kt~SgllKLL~P~~~~~~ee 425 (449)
T TIGR02688 349 WEIPKIRKEMFSNGYGFVVDYFAEALRELR---EREYADIVDRHFSLSPNLNTRDVIAVKKTFSGLMKILFPHGTITKEE 425 (449)
T ss_pred CcCccCCHHHcccCCcchHHHHHHHHHHHH---hhHHHHhhhhheecCCCcchhhHHHHHHHHHHHHHHhCCCCCCCHHH
Confidence 12232222111 112222222221 1111 22233445778889888766553332 334456799999
Q ss_pred HHHHHHHHHhhc
Q 015875 375 FLDAVNKVIKGY 386 (399)
Q Consensus 375 ~~~ai~~v~~~~ 386 (399)
++..++-.+...
T Consensus 426 ~~~~l~~Ale~R 437 (449)
T TIGR02688 426 FTECLEPALEGR 437 (449)
T ss_pred HHHHHHHHHHHH
Confidence 998887666554
No 273
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.25 E-value=8.1e-06 Score=81.17 Aligned_cols=80 Identities=24% Similarity=0.369 Sum_probs=56.2
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhh------hch--------hHHHHHHHHHHHHcC
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------VGE--------GARMVRELFQMARSK 233 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~------~g~--------~~~~v~~~f~~a~~~ 233 (399)
|+.+..-++|+|+||+|||+++..+|... +.+.++++..+-.... .|. .+..+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 67788889999999999999999998754 3567777765432211 110 112244566666677
Q ss_pred CCEEEEEecCCcccCCc
Q 015875 234 KACIVFFDEVDAIGGAR 250 (399)
Q Consensus 234 ~p~il~iDEiD~l~~~r 250 (399)
.|.+|+||+|..+....
T Consensus 158 ~~~lVVIDSIq~l~~~~ 174 (372)
T cd01121 158 KPDLVIIDSIQTVYSSE 174 (372)
T ss_pred CCcEEEEcchHHhhccc
Confidence 89999999999986543
No 274
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.23 E-value=3.3e-06 Score=68.91 Aligned_cols=23 Identities=43% Similarity=0.803 Sum_probs=20.7
Q ss_pred eeEeCCCCCcHHHHHHHHHHhcC
Q 015875 178 VLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~~ 200 (399)
|+||||||+|||++|+.++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998653
No 275
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.21 E-value=1.9e-05 Score=70.41 Aligned_cols=102 Identities=20% Similarity=0.193 Sum_probs=59.8
Q ss_pred eeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhh------hch-----------------------hH-----
Q 015875 178 VLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------VGE-----------------------GA----- 220 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~------~g~-----------------------~~----- 220 (399)
++++||||||||+++..++... +.+++.++..+-.... .|- ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887643 5666666543322110 000 00
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 221 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 221 ~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
.....+...+....|.+++||++..+... ........+..++..+.. .++.+|++++..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~ 140 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR----FGVTTLLTSEQS 140 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH----CCCEEEEEeccc
Confidence 11233444445567889999999887532 123334445556655542 245566666544
No 276
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.21 E-value=1e-05 Score=81.06 Aligned_cols=195 Identities=23% Similarity=0.266 Sum_probs=110.4
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHH-----HHH---HHHcCCCEEEEEecCCcc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRE-----LFQ---MARSKKACIVFFDEVDAI 246 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~-----~f~---~a~~~~p~il~iDEiD~l 246 (399)
.-+|||.|.|||.|+-|.+.+-.-....++. ++ -.+...|-++..+++ .+- ..-....+|++|||||++
T Consensus 364 DINVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SG--KGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKM 440 (729)
T KOG0481|consen 364 DINVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SG--KGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKM 440 (729)
T ss_pred ceeEEEecCCchhHHHHHHHHHhcCceEEEe-cC--CCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhcc
Confidence 3479999999999999999987654333221 11 000001111111110 000 001134569999999999
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHh------cCC--CCCCCeEEEEecCCC----C-------C--CCccccCCCCcee
Q 015875 247 GGARFDDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRP----D-------T--LDPALLRPGRLDR 305 (399)
Q Consensus 247 ~~~r~~~~~~~~~~~~~~l~~ll~~l------~~~--~~~~~v~vI~atn~~----~-------~--ld~al~r~gRf~~ 305 (399)
..+-..++-+.+++- -|+ .-+.+..|++|+|.+ + . +-+.+++ |||.
T Consensus 441 -----------re~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDm 507 (729)
T KOG0481|consen 441 -----------REDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDM 507 (729)
T ss_pred -----------CchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccE
Confidence 233333444444331 111 124567789999864 1 2 2378888 9999
Q ss_pred EEEecCCCHHHHHH-----HHHHHHhccCCC--------CcccHHHHHH--------------------H----------
Q 015875 306 KVEFGLPDLESRTQ-----IFKIHTRTMNCE--------RDIRFELLAR--------------------L---------- 342 (399)
Q Consensus 306 ~i~~~~P~~~er~~-----Il~~~~~~~~~~--------~~~~~~~la~--------------------~---------- 342 (399)
++-+..-..++|-. ++..|..+.+.. ..+.++.+-+ +
T Consensus 508 IFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~ 587 (729)
T KOG0481|consen 508 IFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKG 587 (729)
T ss_pred EEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHH
Confidence 88777643333332 444444321111 1112221100 0
Q ss_pred ---CC---------CCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 015875 343 ---CP---------NSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 343 ---~~---------g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~ 385 (399)
.+ -.+-+++.++++-+..+|..+-....|.+|+.+|++-+..+
T Consensus 588 ~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~vS 642 (729)
T KOG0481|consen 588 VRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQVS 642 (729)
T ss_pred HHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhHh
Confidence 00 01458999999999999999999999999999999877543
No 277
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.18 E-value=1e-05 Score=74.85 Aligned_cols=117 Identities=18% Similarity=0.339 Sum_probs=66.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh----hhhc-------------------hhHHHHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ----KYVG-------------------EGARMVR 224 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~----~~~g-------------------~~~~~v~ 224 (399)
|++....++|+||||+|||+++..+|... +...+.+++..+.. ...+ +....+.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 77778889999999999999999999743 66777777662211 1111 0011122
Q ss_pred HHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 225 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 225 ~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
.+..... ..+.+++||-+.++......+ .....+..+.+.+++..+..+....++.+|++...
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~ 161 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQV 161 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccc
Confidence 2222222 578899999999886432111 11122233444444443333333456767776543
No 278
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.16 E-value=4.4e-05 Score=74.32 Aligned_cols=159 Identities=19% Similarity=0.289 Sum_probs=95.0
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhh------
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY------ 215 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~------ 215 (399)
.+.+.+.++..+...+-. . .-.-|..+.|||.+|||||.+++.+.+.++.+.+.++|-+.+..-
T Consensus 7 ~v~~Re~qi~~L~~Llg~---~-------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---N-------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred CccchHHHHHHHHHHhCC---C-------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 377889999998887742 1 113577889999999999999999999999999999986644310
Q ss_pred ---------hchh----HHHHH---HHHHH---HHcC-CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC
Q 015875 216 ---------VGEG----ARMVR---ELFQM---ARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF 275 (399)
Q Consensus 216 ---------~g~~----~~~v~---~~f~~---a~~~-~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~ 275 (399)
.|.. ...+. .+|.. +... ..-.|++|.+|.+-.. +......++++-+.+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~--------~a~ll~~l~~L~el~--- 145 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM--------DAILLQCLFRLYELL--- 145 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc--------chHHHHHHHHHHHHh---
Confidence 1111 11111 12222 1222 3558899999999321 333334444443332
Q ss_pred CCCCCeEEEEecCCCCCCCccccCCCCce-eEEEecCCCHHHHHHHHHHH
Q 015875 276 DARGNIKVLMATNRPDTLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIH 324 (399)
Q Consensus 276 ~~~~~v~vI~atn~~~~ld~al~r~gRf~-~~i~~~~P~~~er~~Il~~~ 324 (399)
+...+.+|...-... +.-+.+.|-++ -.++||.|+.++...|+..-
T Consensus 146 -~~~~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 146 -NEPTIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred -CCCceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 233444444332221 11111222332 37899999999999887643
No 279
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.15 E-value=2.8e-05 Score=67.19 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.1
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+..++++|+||+|||+++.-+++.+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45579999999999999999999865
No 280
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.6e-05 Score=84.11 Aligned_cols=161 Identities=26% Similarity=0.340 Sum_probs=112.9
Q ss_pred ccccCc-HHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CCceEEEecc
Q 015875 141 NDVGGC-KEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFIRVIGS 209 (399)
Q Consensus 141 ~~i~G~-~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~~~i~v~~s 209 (399)
+-++|. ++.++++.+++.. +..++-+|.|.||+|||.++.-++++. +..++.++..
T Consensus 186 dPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 186 DPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 335555 8888888777764 334689999999999999999999864 3456667666
Q ss_pred chhh--hhhchhHHHHHHHHHHHH-cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 015875 210 ELVQ--KYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 286 (399)
Q Consensus 210 ~l~~--~~~g~~~~~v~~~f~~a~-~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~a 286 (399)
.+.. ++.|+.+..++.+...+. ....-|||+||++-+.+.... .+..+..+.|..++ .++.+.+|+|
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---~~~~d~~nlLkp~L-------~rg~l~~IGa 322 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---YGAIDAANLLKPLL-------ARGGLWCIGA 322 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---chHHHHHHhhHHHH-------hcCCeEEEec
Confidence 5443 577889999999999887 456679999999999765432 11122222222222 2455889998
Q ss_pred cCC-----CCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhc
Q 015875 287 TNR-----PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 327 (399)
Q Consensus 287 tn~-----~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~ 327 (399)
|.. --.-+|++-+ || ..+.++.|+.++-..||+.....
T Consensus 323 tT~e~Y~k~iekdPalEr--rw-~l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALER--RW-QLVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred ccHHHHHHHHhhCcchhh--Cc-ceeEeccCcccchhhhhhhhhhh
Confidence 753 1345899988 99 56778889887766677665544
No 281
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.14 E-value=1.2e-05 Score=77.10 Aligned_cols=161 Identities=19% Similarity=0.313 Sum_probs=102.8
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHH---hcCCceEEEeccchhhh----
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN---RTDACFIRVIGSELVQK---- 214 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~---~~~~~~i~v~~s~l~~~---- 214 (399)
.+.|..+.-+.+.+++.....+ ....+|++.||.|+|||++....-. +.+..|+.+........
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 3778888888888887653333 3466899999999999987766543 55667666543322211
Q ss_pred -----------------hhchhHHHHHHHHHHHHc-----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHh
Q 015875 215 -----------------YVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL 272 (399)
Q Consensus 215 -----------------~~g~~~~~v~~~f~~a~~-----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l 272 (399)
..|.....+..++...+. ..+.|.++||||..++ ..-|-.+..+++--
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~----------h~rQtllYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP----------HSRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc----------chhhHHHHHHHHHH
Confidence 123333444444444333 2234555789999854 33455666666543
Q ss_pred cCCCCCCCeEEEEecCCC---CCCCccccCCCCceeE-EEecCC-CHHHHHHHHHHHH
Q 015875 273 DGFDARGNIKVLMATNRP---DTLDPALLRPGRLDRK-VEFGLP-DLESRTQIFKIHT 325 (399)
Q Consensus 273 ~~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~~~-i~~~~P-~~~er~~Il~~~~ 325 (399)
. ..+.++.||+.|.+. +.|...+.+ ||... |.++++ +..+..++++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 3 245678899888775 445678888 99875 666553 6788888888776
No 282
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.12 E-value=1.2e-05 Score=89.31 Aligned_cols=136 Identities=26% Similarity=0.303 Sum_probs=94.2
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch------hhhh-hch--hHHHHH--HHHHHHHcCCCEEEEEecC
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL------VQKY-VGE--GARMVR--ELFQMARSKKACIVFFDEV 243 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l------~~~~-~g~--~~~~v~--~~f~~a~~~~p~il~iDEi 243 (399)
.+++||-|.||+|||++..++|+.+|..+++++.|+- ++.+ .++ ++-.++ ..+...+ ...-+++||+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr--~G~WVlLDEi 1620 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR--DGGWVLLDEI 1620 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh--cCCEEEeehh
Confidence 4689999999999999999999999999999998762 2221 122 111222 2222223 2348899999
Q ss_pred CcccCCccCCCCCCChHHHHHHHHHHHHh--------c-CCCCCCCeEEEEecCCC------CCCCccccCCCCceeEEE
Q 015875 244 DAIGGARFDDGVGGDNEVQRTMLEIVNQL--------D-GFDARGNIKVLMATNRP------DTLDPALLRPGRLDRKVE 308 (399)
Q Consensus 244 D~l~~~r~~~~~~~~~~~~~~l~~ll~~l--------~-~~~~~~~v~vI~atn~~------~~ld~al~r~gRf~~~i~ 308 (399)
... +..+..-|...|..- + .+...++.+|.+|-|+- ..|+..++. || .++.
T Consensus 1621 NLa-----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV~ 1686 (4600)
T COG5271 1621 NLA-----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVVK 1686 (4600)
T ss_pred hhh-----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heEE
Confidence 876 455555566555542 1 23456688888888863 578889988 99 6788
Q ss_pred ecCCCHHHHHHHHHHHHh
Q 015875 309 FGLPDLESRTQIFKIHTR 326 (399)
Q Consensus 309 ~~~P~~~er~~Il~~~~~ 326 (399)
+...+.++...|......
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred ecccccchHHHHHHhhCC
Confidence 888888888877766554
No 283
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.10 E-value=1.5e-05 Score=77.48 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=70.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhh----------------hhchhHHHHHHHHHHHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK----------------YVGEGARMVRELFQMAR 231 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~----------------~~g~~~~~v~~~f~~a~ 231 (399)
|+++.+.++|+||||||||+||-.++... +.+.+.++..+.... .....+..+..+...++
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67888889999999999999988876543 666777766443221 01112333333434455
Q ss_pred cCCCEEEEEecCCcccCCc-cCCCCCC-ChHHH-HHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 232 SKKACIVFFDEVDAIGGAR-FDDGVGG-DNEVQ-RTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 232 ~~~p~il~iDEiD~l~~~r-~~~~~~~-~~~~~-~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
...+.+|+||-+.++.+.. .++..+. ....+ +.+.+++..+.......++.+|++..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 6778999999999987532 1111111 11122 33334454444444456777777754
No 284
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.10 E-value=1.6e-05 Score=77.36 Aligned_cols=118 Identities=19% Similarity=0.261 Sum_probs=70.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh---cCCceEEEeccchhhh----------------hhchhHHHHHHHHHHHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQK----------------YVGEGARMVRELFQMAR 231 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~---~~~~~i~v~~s~l~~~----------------~~g~~~~~v~~~f~~a~ 231 (399)
|++..+-+.++||||||||+||-.++.. .+...+.++..+-... .....+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 6778888999999999999999988754 3667777776442211 01112233333333445
Q ss_pred cCCCEEEEEecCCcccCCc-cCCCCCC-ChHHH-HHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 232 SKKACIVFFDEVDAIGGAR-FDDGVGG-DNEVQ-RTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 232 ~~~p~il~iDEiD~l~~~r-~~~~~~~-~~~~~-~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
...+++|+||-+.++.+.. .++..+. ....+ +.+.+.+..+.......++.+|++..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 6778999999999987532 2211111 11122 33445555444444456777777654
No 285
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.09 E-value=3.9e-05 Score=70.52 Aligned_cols=117 Identities=23% Similarity=0.294 Sum_probs=66.2
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh----hhhc-------------------hhHHHHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ----KYVG-------------------EGARMVR 224 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~----~~~g-------------------~~~~~v~ 224 (399)
|+.+...++++|+||+|||+++..+|... +.+.+.++..+... ...+ +....+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 77778889999999999999999999754 45666665533211 0000 0011222
Q ss_pred HHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 225 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 225 ~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
.+...+. ..+++|+||-+..+.....++.. .....+..+.+++..+..+....++.+|+++..
T Consensus 95 ~~~~~~~-~~~~lvvIDsi~~l~~~~~~~~~-~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~ 157 (218)
T cd01394 95 ETETFAD-EKVDLVVVDSATALYRLELGDDD-TTIKNYRELAKQLTFLLWLARKHDVAVVITNQV 157 (218)
T ss_pred HHHHHHh-cCCcEEEEechHHhhhHHhcCcc-chHHHHHHHHHHHHHHHHHHHHhCCEEEEecCC
Confidence 3332222 34789999999988532211110 112233344444444433334557777777654
No 286
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.09 E-value=4.4e-05 Score=71.09 Aligned_cols=110 Identities=15% Similarity=0.273 Sum_probs=64.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhh-----------------------------hc-
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY-----------------------------VG- 217 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~-----------------------------~g- 217 (399)
|+++...+++.||||||||+++..++... +...+.+...+-.... .+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 56777889999999999999976555432 5556666543211110 00
Q ss_pred -hhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 218 -EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 218 -~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
+....+..+...+....|.++++||+-.+... ..+....+.+.+++..+.. . +..++.+++..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~------~~d~~~~~~l~~~l~~l~~---~-g~tvi~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISN------DASEVAVNDLMAFFKRISS---L-NKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcC------CcchHHHHHHHHHHHHHHh---C-CCEEEEEeccc
Confidence 01233444555555567889999999886421 1123344556666665532 2 33566666643
No 287
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.07 E-value=2.3e-05 Score=80.22 Aligned_cols=193 Identities=21% Similarity=0.260 Sum_probs=106.8
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEEEe-ccchhhhhhchhHHH-----HHHHHHHH---HcCCCEEEEEecCCcc
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIRVI-GSELVQKYVGEGARM-----VRELFQMA---RSKKACIVFFDEVDAI 246 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~v~-~s~l~~~~~g~~~~~-----v~~~f~~a---~~~~p~il~iDEiD~l 246 (399)
-+|||.|.||||||-+.|.+++-....++..- ++.- +|-+... .++..-.+ -....+|-+|||||++
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASa----vGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKM 558 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASA----VGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKM 558 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccc----cceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhh
Confidence 46999999999999999999986554443321 1100 0100000 00000000 1134459999999999
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEecCCC-----------C--CCCccccCCCCcee
Q 015875 247 GGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRP-----------D--TLDPALLRPGRLDR 305 (399)
Q Consensus 247 ~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~-----------~--~ld~al~r~gRf~~ 305 (399)
.... ...+-+.+++-. |+ .-...+.||+|+|+. + .+...+++ |||-
T Consensus 559 ndqD-----------RtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlS--RFDi 625 (854)
T KOG0477|consen 559 NDQD-----------RTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS--RFDI 625 (854)
T ss_pred cccc-----------cchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhh--hcce
Confidence 5432 111222222100 00 012456799999872 1 34567777 9987
Q ss_pred EEEecC---CCHHHHHH--HHHHHHhccCCC--------------------------------------CcccHHHHHHH
Q 015875 306 KVEFGL---PDLESRTQ--IFKIHTRTMNCE--------------------------------------RDIRFELLARL 342 (399)
Q Consensus 306 ~i~~~~---P~~~er~~--Il~~~~~~~~~~--------------------------------------~~~~~~~la~~ 342 (399)
...+.- |-.+++.. ++..|.+..... ...|.+.++..
T Consensus 626 LcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~v 705 (854)
T KOG0477|consen 626 LCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSV 705 (854)
T ss_pred eeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHH
Confidence 554443 44444433 344444322111 11122222211
Q ss_pred ---------CCC-C--cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 015875 343 ---------CPN-S--TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 343 ---------~~g-~--sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~ 385 (399)
..| + +-+.|..+++.+...|...-+..|+.+|+..|+.-+..+
T Consensus 706 ya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldS 760 (854)
T KOG0477|consen 706 YADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDS 760 (854)
T ss_pred HHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHH
Confidence 112 1 448889999999999988889999999999999877654
No 288
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.05 E-value=1.1e-05 Score=74.26 Aligned_cols=98 Identities=20% Similarity=0.282 Sum_probs=52.8
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccc--hhh--------hhhchhHHHHHHHHHHHH--cCCCEEEEEec
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE--LVQ--------KYVGEGARMVRELFQMAR--SKKACIVFFDE 242 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~--l~~--------~~~g~~~~~v~~~f~~a~--~~~p~il~iDE 242 (399)
|..+||||+||+|||++|+.++.. .-++..+++. +.+ .........+.+.+..+. ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 567999999999999999999742 2222222211 000 001111223333333332 24567999999
Q ss_pred CCcccC------CccCC----CCCCChHHHHHHHHHHHHhcC
Q 015875 243 VDAIGG------ARFDD----GVGGDNEVQRTMLEIVNQLDG 274 (399)
Q Consensus 243 iD~l~~------~r~~~----~~~~~~~~~~~l~~ll~~l~~ 274 (399)
|+.+.. .+... ...+=..+...++.++..+..
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~ 131 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE 131 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 998743 12111 111223455666777776653
No 289
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.00 E-value=7.9e-05 Score=69.39 Aligned_cols=76 Identities=18% Similarity=0.351 Sum_probs=50.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh---cCCceEEEeccchhhhhh-------------------------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQKYV------------------------------- 216 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~---~~~~~i~v~~s~l~~~~~------------------------------- 216 (399)
|++.+..++++|+||+|||+++..++.. .+.+.+.+...+-...+.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence 7888889999999999999999999754 255666665433221110
Q ss_pred --chhHHHHHHHHHHHHcCCCEEEEEecCCcc
Q 015875 217 --GEGARMVRELFQMARSKKACIVFFDEVDAI 246 (399)
Q Consensus 217 --g~~~~~v~~~f~~a~~~~p~il~iDEiD~l 246 (399)
......+..+........|.+++||++..+
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~ 132 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIF 132 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHH
Confidence 001223333444445567889999999866
No 290
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.98 E-value=7.7e-05 Score=76.26 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=55.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhh------hchh--------HHHHHHHHHHHHcC
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------VGEG--------ARMVRELFQMARSK 233 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~------~g~~--------~~~v~~~f~~a~~~ 233 (399)
|+.+..-++|+|+||+|||+|+..++... +.+.++++..+-.... .|-. +..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 77888889999999999999999998754 4567777765533221 1110 11234555566667
Q ss_pred CCEEEEEecCCcccCC
Q 015875 234 KACIVFFDEVDAIGGA 249 (399)
Q Consensus 234 ~p~il~iDEiD~l~~~ 249 (399)
.|.+++||.|..+...
T Consensus 170 ~~~~vVIDSIq~l~~~ 185 (454)
T TIGR00416 170 NPQACVIDSIQTLYSP 185 (454)
T ss_pred CCcEEEEecchhhccc
Confidence 8999999999998543
No 291
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.97 E-value=4.6e-05 Score=75.45 Aligned_cols=113 Identities=17% Similarity=0.297 Sum_probs=64.2
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCC-----c-eEEEeccc---------------hhhhhhchhHHHHH---HHHHHH
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDA-----C-FIRVIGSE---------------LVQKYVGEGARMVR---ELFQMA 230 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~-----~-~i~v~~s~---------------l~~~~~g~~~~~v~---~~f~~a 230 (399)
..-.+|+||||+|||+|++.|++.... . |+.+.... +.+.+-......++ .++..|
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 345999999999999999999986532 2 33332221 11111111222222 233333
Q ss_pred H----cCCCEEEEEecCCcccCCccC--------CCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 015875 231 R----SKKACIVFFDEVDAIGGARFD--------DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 287 (399)
Q Consensus 231 ~----~~~p~il~iDEiD~l~~~r~~--------~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 287 (399)
+ .+...+||||||+++.....+ .+.+-++.....+-.++..-......+.+.+|+|.
T Consensus 249 e~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEE
Confidence 2 345679999999998643321 11233455555666777765555456677777764
No 292
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00013 Score=67.47 Aligned_cols=136 Identities=10% Similarity=0.078 Sum_probs=95.7
Q ss_pred CCceeEeCCCC-CcHHHHHHHHHHhcCC---------ceEEEeccchhhhh-hchhHHHHHHHHHHHH----cCCCEEEE
Q 015875 175 PKGVLCYGPPG-TGKTLLARAVANRTDA---------CFIRVIGSELVQKY-VGEGARMVRELFQMAR----SKKACIVF 239 (399)
Q Consensus 175 ~~~vLL~GppG-tGKT~larala~~~~~---------~~i~v~~s~l~~~~-~g~~~~~v~~~f~~a~----~~~p~il~ 239 (399)
....||.|..+ +||..++..++..+.+ .++.+....-..+. ..-+-..+|++.+.+. .....|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 45799999998 9999999888876532 12333211100000 0012334455444433 34567999
Q ss_pred EecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHH
Q 015875 240 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQ 319 (399)
Q Consensus 240 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~ 319 (399)
|+++|.| ..+..+.|+.+|++ +..++.+|..|+.+..+.|.+++ |+ ..+.|+.|+...-.+
T Consensus 95 I~~ae~m-----------t~~AANALLKtLEE-----PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 95 IYSAELM-----------NLNAANSCLKILED-----APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNE 155 (263)
T ss_pred EechHHh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHH
Confidence 9999999 77888999999885 56778888888889999999999 98 889999999988888
Q ss_pred HHHHHHhccC
Q 015875 320 IFKIHTRTMN 329 (399)
Q Consensus 320 Il~~~~~~~~ 329 (399)
.....+..+.
T Consensus 156 ~~~~~~~p~~ 165 (263)
T PRK06581 156 LYSQFIQPIA 165 (263)
T ss_pred HHHHhccccc
Confidence 7776665544
No 293
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.94 E-value=0.00068 Score=66.04 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=53.1
Q ss_pred CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC---CCCC------------ccc
Q 015875 233 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP---DTLD------------PAL 297 (399)
Q Consensus 233 ~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~---~~ld------------~al 297 (399)
..+-|+||||+|++ +++....+++.++.+-. ..++++|.+.++- ..+. ...
T Consensus 171 ~~~iViiIDdLDR~-----------~~~~i~~~l~~ik~~~~---~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~y 236 (325)
T PF07693_consen 171 KKRIVIIIDDLDRC-----------SPEEIVELLEAIKLLLD---FPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREY 236 (325)
T ss_pred CceEEEEEcchhcC-----------CcHHHHHHHHHHHHhcC---CCCeEEEEEecHHHHHHHHHhhcCcccccccHHHH
Confidence 34679999999999 45555666666666543 3788888887642 1111 111
Q ss_pred cCCCCceeEEEecCCCHHHHHHHHHHHHhcc
Q 015875 298 LRPGRLDRKVEFGLPDLESRTQIFKIHTRTM 328 (399)
Q Consensus 298 ~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~ 328 (399)
+. --|+..+.+|.|+..+...++...+...
T Consensus 237 Le-Kiiq~~~~lP~~~~~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 237 LE-KIIQVPFSLPPPSPSDLERYLNELLESL 266 (325)
T ss_pred HH-hhcCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 21 1455688999999988888887775543
No 294
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.94 E-value=6.2e-05 Score=68.47 Aligned_cols=105 Identities=16% Similarity=0.282 Sum_probs=59.1
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHh-----cCCce-------------EEEeccchhh----hhhchhHHHHHHHHHH
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANR-----TDACF-------------IRVIGSELVQ----KYVGEGARMVRELFQM 229 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~-----~~~~~-------------i~v~~s~l~~----~~~g~~~~~v~~~f~~ 229 (399)
+...+.++|.||+|+|||+++|.++.. .|.++ ..+...+-.. .+..+ ...+..+++.
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e-~~~~~~iL~~ 100 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAE-LRRLKEIVEK 100 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHH-HHHHHHHHHh
Confidence 344567999999999999999999853 23321 1111111000 01111 1345566666
Q ss_pred HHcCCCEEEEEecCCcccCCccCCCCCCChHHHH-HHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 230 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQR-TMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 230 a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~-~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
+....|.++++||.-.-. +..... .+..+++.+.. .+..+|++|+..+
T Consensus 101 ~~~~~p~llllDEp~~gl----------D~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~ 149 (199)
T cd03283 101 AKKGEPVLFLLDEIFKGT----------NSRERQAASAAVLKFLKN----KNTIGIISTHDLE 149 (199)
T ss_pred ccCCCCeEEEEecccCCC----------CHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHH
Confidence 554588999999975432 333222 23345555531 2456788887754
No 295
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.92 E-value=9.2e-05 Score=65.07 Aligned_cols=107 Identities=17% Similarity=0.196 Sum_probs=66.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcC--CceEEEeccchhh--------hhhch-----hHHHHHHHHHHHHcCCC
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQ--------KYVGE-----GARMVRELFQMARSKKA 235 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~--~~~i~v~~s~l~~--------~~~g~-----~~~~v~~~f~~a~~~~p 235 (399)
.+.+...+.|.||+|+|||+|.+.++.... .--+.++...+.. ..++- +....+-.+..+-...|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p 101 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNA 101 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCC
Confidence 356777899999999999999999998642 1123333322211 00110 11122334555566788
Q ss_pred EEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 236 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 236 ~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
.++++||-..- -+......+.+++.++.. . +..+|++|+..+
T Consensus 102 ~illlDEP~~~----------LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~ 143 (163)
T cd03216 102 RLLILDEPTAA----------LTPAEVERLFKVIRRLRA---Q-GVAVIFISHRLD 143 (163)
T ss_pred CEEEEECCCcC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHH
Confidence 99999997543 267778888888877631 2 345677777654
No 296
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.91 E-value=3e-05 Score=71.83 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.7
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
+.+...|-|.||+|||||||.+.+|..
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455667999999999999999999984
No 297
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.91 E-value=9.3e-06 Score=67.23 Aligned_cols=30 Identities=37% Similarity=0.631 Sum_probs=26.6
Q ss_pred eeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 178 VLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
++|.||||+||||+|+.+|+.++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999987766554
No 298
>PHA00729 NTP-binding motif containing protein
Probab=97.90 E-value=1.5e-05 Score=73.44 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=23.0
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~ 200 (399)
.+++|+|+||||||++|.++++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875
No 299
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.88 E-value=0.00018 Score=67.65 Aligned_cols=114 Identities=16% Similarity=0.263 Sum_probs=63.8
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCc------eEEEecc------chhhhh--------hchhH----HHHHHHHHH
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDAC------FIRVIGS------ELVQKY--------VGEGA----RMVRELFQM 229 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~------~i~v~~s------~l~~~~--------~g~~~----~~v~~~f~~ 229 (399)
.+..++|.||+|+|||++++.+++..... |+.+... ++.... .+++. .....+...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999999876432 3332221 111111 11111 111222222
Q ss_pred H----HcCCCEEEEEecCCcccCCc-------cCCCC-CCChHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 015875 230 A----RSKKACIVFFDEVDAIGGAR-------FDDGV-GGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 287 (399)
Q Consensus 230 a----~~~~p~il~iDEiD~l~~~r-------~~~~~-~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 287 (399)
+ ..+...++|+||+.++...- +..-+ |.++.+...+-++++.-..+...+.+.++.|.
T Consensus 95 a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~ 164 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATA 164 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeh
Confidence 2 23556799999999874322 11112 23555666666777654443346677666444
No 300
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.86 E-value=2.1e-05 Score=81.11 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=46.5
Q ss_pred ccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-CCceEEEec
Q 015875 139 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-DACFIRVIG 208 (399)
Q Consensus 139 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-~~~~i~v~~ 208 (399)
-|+|+.|++++++++.+.+..... .++ ...+.++|.||||+|||+||+.|++.+ ..+++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~------gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ------GLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH------hcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 467899999999999988843211 111 244579999999999999999999966 235555544
No 301
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.86 E-value=0.0002 Score=66.88 Aligned_cols=39 Identities=31% Similarity=0.323 Sum_probs=30.6
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh---cCCceEEEecc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGS 209 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~---~~~~~i~v~~s 209 (399)
|++++..+|++||||+|||+++..++.+ .+.+.+.+...
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 7888999999999999999999876653 35566666543
No 302
>PRK09354 recA recombinase A; Provisional
Probab=97.85 E-value=7.9e-05 Score=73.11 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=52.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh---cCCceEEEeccchhhh-h---------------hchhHHHHHHHHHHHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQK-Y---------------VGEGARMVRELFQMAR 231 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~---~~~~~i~v~~s~l~~~-~---------------~g~~~~~v~~~f~~a~ 231 (399)
|++..+-++|+||||||||+|+-.++.. .+...+.++..+-... + ....+..+..+-..++
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 6778888999999999999999988753 3667777776542211 0 1112223333333445
Q ss_pred cCCCEEEEEecCCcccC
Q 015875 232 SKKACIVFFDEVDAIGG 248 (399)
Q Consensus 232 ~~~p~il~iDEiD~l~~ 248 (399)
...+.+|+||=+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 67788999999999875
No 303
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.85 E-value=9.6e-05 Score=68.21 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=66.5
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---C------CceEEEeccchhhh-hh-----------------------c
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---D------ACFIRVIGSELVQK-YV-----------------------G 217 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~------~~~i~v~~s~l~~~-~~-----------------------g 217 (399)
|++...-+.|+||||+|||+++..+|... + ...+.++..+-+.. .. .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 77888889999999999999999998653 2 55666665432110 00 0
Q ss_pred hh---HHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 218 EG---ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 218 ~~---~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
.. ...++.+........+.+|+||-+..+........ +...+..+.+.+++..+..+....++.||.+..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGR-GMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCC-chHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 01 11122222222245778999999998864321111 001223344555555555444456677776653
No 304
>PRK04296 thymidine kinase; Provisional
Probab=97.83 E-value=0.00014 Score=65.62 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=40.5
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec--c--c----hhhhhhchh-----HHHHHHHHHHH--HcCCCEEE
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT---DACFIRVIG--S--E----LVQKYVGEG-----ARMVRELFQMA--RSKKACIV 238 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~---~~~~i~v~~--s--~----l~~~~~g~~-----~~~v~~~f~~a--~~~~p~il 238 (399)
-.+++||+|+|||+++..++.++ +..++.+.. . . +..+ .|.. .....+++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47899999999999999888765 444444432 1 1 1111 1110 01122333333 33466799
Q ss_pred EEecCCcc
Q 015875 239 FFDEVDAI 246 (399)
Q Consensus 239 ~iDEiD~l 246 (399)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999876
No 305
>PRK08118 topology modulation protein; Reviewed
Probab=97.83 E-value=4e-05 Score=67.76 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=29.3
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEec
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIG 208 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~ 208 (399)
.|++.||||+||||+|+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999887764
No 306
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.82 E-value=7.1e-05 Score=69.50 Aligned_cols=117 Identities=21% Similarity=0.285 Sum_probs=67.5
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---------CCceEEEeccchhh-h-h------------------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQ-K-Y------------------------ 215 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---------~~~~i~v~~s~l~~-~-~------------------------ 215 (399)
|++...-+.|+||||+|||+++..++... +...+.++..+-+. . .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 67888889999999999999999998542 25667776544111 0 0
Q ss_pred -hchhHHHHHHHHHHHHcC-CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 216 -VGEGARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 216 -~g~~~~~v~~~f~~a~~~-~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
..+....+..+-...... .+.+|+||-+..+......+. +......+.+.+++..+..+....++.||++..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGR-GELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 000111222232333445 789999999998753211111 001233445555666555444455676776653
No 307
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.81 E-value=4.4e-05 Score=72.63 Aligned_cols=68 Identities=28% Similarity=0.321 Sum_probs=42.7
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCC----------ceEEEe-ccchhhhh-------hch------hHHHHHHHHHHHH
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDA----------CFIRVI-GSELVQKY-------VGE------GARMVRELFQMAR 231 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~----------~~i~v~-~s~l~~~~-------~g~------~~~~v~~~f~~a~ 231 (399)
.+++|.||+|+||||+.++++..+.. .+..++ ..++...+ +|. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999987632 221111 12332211 111 0111234566667
Q ss_pred cCCCEEEEEecC
Q 015875 232 SKKACIVFFDEV 243 (399)
Q Consensus 232 ~~~p~il~iDEi 243 (399)
...|.+|++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 788999999996
No 308
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.78 E-value=0.00017 Score=64.27 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=67.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc-------------eEEEeccchhhh----------hhch--hHHHHHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------------FIRVIGSELVQK----------YVGE--GARMVRE 225 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~~~-------------~i~v~~s~l~~~----------~~g~--~~~~v~~ 225 (399)
.+.++.-+.|.||+|+|||||.+++....+.. +..+...++... .... .....+-
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl 96 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRV 96 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHH
Confidence 34667779999999999999999997432211 111110001110 0000 0112223
Q ss_pred HHHHHHcCC--CEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCc
Q 015875 226 LFQMARSKK--ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRL 303 (399)
Q Consensus 226 ~f~~a~~~~--p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf 303 (399)
.+..+-... |.++++||--.- -+......+.+++.++.. .+..||++|+.++.+ + .+
T Consensus 97 ~laral~~~~~p~llLlDEPt~~----------LD~~~~~~l~~~l~~~~~----~g~tvIivSH~~~~~-----~--~~ 155 (176)
T cd03238 97 KLASELFSEPPGTLFILDEPSTG----------LHQQDINQLLEVIKGLID----LGNTVILIEHNLDVL-----S--SA 155 (176)
T ss_pred HHHHHHhhCCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHH-----H--hC
Confidence 344444566 889999997554 266777777777776531 244577788766422 2 35
Q ss_pred eeEEEecC
Q 015875 304 DRKVEFGL 311 (399)
Q Consensus 304 ~~~i~~~~ 311 (399)
|+.+.+..
T Consensus 156 d~i~~l~~ 163 (176)
T cd03238 156 DWIIDFGP 163 (176)
T ss_pred CEEEEECC
Confidence 56665543
No 309
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.78 E-value=2.5e-05 Score=68.71 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=30.0
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
.++..++|+|+||||||++|+.+|+.++.+++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3567899999999999999999999999888743
No 310
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.77 E-value=7.9e-05 Score=67.54 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=34.4
Q ss_pred HHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 226 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 226 ~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
....|-...|.+++|||.-+.+ |++.....+.++..+- ..+..+|+.|..
T Consensus 146 AIARALaM~P~vmLFDEPTSAL----------DPElv~EVL~vm~~LA----~eGmTMivVTHE 195 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSAL----------DPELVGEVLDVMKDLA----EEGMTMIIVTHE 195 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccC----------CHHHHHHHHHHHHHHH----HcCCeEEEEech
Confidence 3344555789999999987653 7888888888887764 233456666653
No 311
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.75 E-value=5.3e-05 Score=78.70 Aligned_cols=106 Identities=24% Similarity=0.355 Sum_probs=67.2
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc-------CCc----eEEEec------------------c-chhhhh-----
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT-------DAC----FIRVIG------------------S-ELVQKY----- 215 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~-------~~~----~i~v~~------------------s-~l~~~~----- 215 (399)
.++++..+|+.||+|||||+|.|++|.-. ..| .+.+.- . .+....
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL 494 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVL 494 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHH
Confidence 56778899999999999999999999842 111 111110 0 000000
Q ss_pred ----hch----------------hHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC
Q 015875 216 ----VGE----------------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF 275 (399)
Q Consensus 216 ----~g~----------------~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~ 275 (399)
.|. ....-|-.|..+--++|.++||||.-.-. +++.+..|.+++++
T Consensus 495 ~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsAL----------De~~e~~l~q~l~~---- 560 (604)
T COG4178 495 HKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSAL----------DEETEDRLYQLLKE---- 560 (604)
T ss_pred HHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhcc----------ChHHHHHHHHHHHh----
Confidence 000 01122345555566899999999976543 67888889988875
Q ss_pred CCCCCeEEEEecCCCC
Q 015875 276 DARGNIKVLMATNRPD 291 (399)
Q Consensus 276 ~~~~~v~vI~atn~~~ 291 (399)
.-.++.||..+.++.
T Consensus 561 -~lp~~tvISV~Hr~t 575 (604)
T COG4178 561 -ELPDATVISVGHRPT 575 (604)
T ss_pred -hCCCCEEEEeccchh
Confidence 235677888887753
No 312
>PRK07261 topology modulation protein; Provisional
Probab=97.75 E-value=6.5e-05 Score=66.65 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=28.5
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEec
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIG 208 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~ 208 (399)
.++|.|+||+||||+|+.++..++.+++.++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 48999999999999999999999988877654
No 313
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.75 E-value=3e-05 Score=70.12 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=58.9
Q ss_pred eeEeCCCCCcHHHHHHHH-HHh---cCCceEEEeccchhhhhhch----hHH-------------HHHHHHHHHHcCCCE
Q 015875 178 VLCYGPPGTGKTLLARAV-ANR---TDACFIRVIGSELVQKYVGE----GAR-------------MVRELFQMARSKKAC 236 (399)
Q Consensus 178 vLL~GppGtGKT~laral-a~~---~~~~~i~v~~s~l~~~~~g~----~~~-------------~v~~~f~~a~~~~p~ 236 (399)
.+++|.||+|||+.|-.. ... .+.+++. +..+|....... ... .......-......+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999987555 332 2555444 443222111111 000 000111111111567
Q ss_pred EEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCC
Q 015875 237 IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLP 312 (399)
Q Consensus 237 il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P 312 (399)
+|+|||++.+.+.+...+ ......+ +++.+.. ..+.-+|.+|..+..+|+.+++ +....+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~----~~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG----KKVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T--------HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCcccc----ccchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 999999999988764311 1122233 4454433 3467799999999999999987 77777766544
No 314
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.74 E-value=5e-05 Score=84.80 Aligned_cols=135 Identities=19% Similarity=0.286 Sum_probs=94.7
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh--hhhhch----hHHH---HHHHHHHHHcCCCEEEEEecCCcc
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV--QKYVGE----GARM---VRELFQMARSKKACIVFFDEVDAI 246 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~--~~~~g~----~~~~---v~~~f~~a~~~~p~il~iDEiD~l 246 (399)
..+||.||+.+|||++...+|+.+|..|++++-.+-. +.|+|. ..+. -..++-.|..... -|++||+...
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~Gy-WIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGY-WIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCc-EEEeeccccC
Confidence 4699999999999999999999999999999876532 234333 1110 1112222322333 8899999876
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhcC---------CCCCCCeEEEEecCCC------CCCCccccCCCCceeEEEecC
Q 015875 247 GGARFDDGVGGDNEVQRTMLEIVNQLDG---------FDARGNIKVLMATNRP------DTLDPALLRPGRLDRKVEFGL 311 (399)
Q Consensus 247 ~~~r~~~~~~~~~~~~~~l~~ll~~l~~---------~~~~~~v~vI~atn~~------~~ld~al~r~gRf~~~i~~~~ 311 (399)
..++..+|.++|..-+. ..+.++..+.+|-|+| ..|..|++. || ..++|..
T Consensus 968 -----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFdd 1033 (4600)
T COG5271 968 -----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDD 1033 (4600)
T ss_pred -----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhhccc
Confidence 66788888888864322 2345567777777876 356778887 88 7888888
Q ss_pred CCHHHHHHHHHHHH
Q 015875 312 PDLESRTQIFKIHT 325 (399)
Q Consensus 312 P~~~er~~Il~~~~ 325 (399)
-+.++...||+..+
T Consensus 1034 ipedEle~ILh~rc 1047 (4600)
T COG5271 1034 IPEDELEEILHGRC 1047 (4600)
T ss_pred CcHHHHHHHHhccC
Confidence 88888888887654
No 315
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.74 E-value=0.00034 Score=64.31 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=58.3
Q ss_pred CceeEeCCCCCcHHHHHHHHHH-----hcCCce--------------EEEeccchhhhhhchhHHHHHHHHH-HHHcCCC
Q 015875 176 KGVLCYGPPGTGKTLLARAVAN-----RTDACF--------------IRVIGSELVQKYVGEGARMVRELFQ-MARSKKA 235 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~-----~~~~~~--------------i~v~~s~l~~~~~g~~~~~v~~~f~-~a~~~~p 235 (399)
+.++|+||.|+|||++.+.++. ..|... ..+...+-...........++.+.. .+....+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 6799999999999999999983 223221 1111111111122222333333222 2233678
Q ss_pred EEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 015875 236 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 294 (399)
Q Consensus 236 ~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 294 (399)
++++|||+..-.. ..+....+..+++.+... ......+|++|...+.+.
T Consensus 110 slvllDE~~~gtd---------~~~~~~~~~ail~~l~~~-~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 110 SLVLIDEFGKGTD---------TEDGAGLLIATIEHLLKR-GPECPRVIVSTHFHELFN 158 (213)
T ss_pred cEEEeccccCCCC---------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEcChHHHHH
Confidence 8999999876421 123344445566655321 112346788887754433
No 316
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00053 Score=67.72 Aligned_cols=100 Identities=23% Similarity=0.368 Sum_probs=73.0
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc--CCceEEEeccchhhhh------hc--------hhHHHHHHHHHHHHcCC
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT--DACFIRVIGSELVQKY------VG--------EGARMVRELFQMARSKK 234 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~--~~~~i~v~~s~l~~~~------~g--------~~~~~v~~~f~~a~~~~ 234 (399)
|+-+..-+||-|.||.|||||.-.++..+ ..+.++|++.+-.+.. .| -.+-.+..+.+.+....
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 66778889999999999999998888765 2378999987755432 22 12445678888888899
Q ss_pred CEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHH
Q 015875 235 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 270 (399)
Q Consensus 235 p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 270 (399)
|.+++||-|+.+.....++..++-..+...-.++++
T Consensus 169 p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~ 204 (456)
T COG1066 169 PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMR 204 (456)
T ss_pred CCEEEEeccceeecccccCCCCcHHHHHHHHHHHHH
Confidence 999999999999887766555544444444444444
No 317
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.73 E-value=0.0011 Score=73.71 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=85.7
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEec--cc-----hhhhh---h-----ch---------------hHHHHH
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG--SE-----LVQKY---V-----GE---------------GARMVR 224 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~--s~-----l~~~~---~-----g~---------------~~~~v~ 224 (399)
.+-++|+||+|.|||+++...++..+ ++..++. .+ |.... + +. ....+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 34699999999999999999987665 4444433 21 11110 0 00 011222
Q ss_pred HHHHHHHc-CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCc-cccCCCC
Q 015875 225 ELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDP-ALLRPGR 302 (399)
Q Consensus 225 ~~f~~a~~-~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~-al~r~gR 302 (399)
.++..... ..|.+|+|||+|.+- +......+..++..+ ..++.+|+++.....+.- .+...
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~-- 173 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR-- 173 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc--
Confidence 33333333 678899999999982 344555666666643 345556566654222211 11111
Q ss_pred ceeEEEec----CCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcH
Q 015875 303 LDRKVEFG----LPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG 348 (399)
Q Consensus 303 f~~~i~~~----~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg 348 (399)
+..+++. ..+.++-.+++...... .+ .......+...|.|+.-
T Consensus 174 -~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 174 -DQLLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGWAT 220 (903)
T ss_pred -CcceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCChHH
Confidence 1234444 55888888887655432 12 23345778888888543
No 318
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.72 E-value=0.0001 Score=62.68 Aligned_cols=35 Identities=31% Similarity=0.657 Sum_probs=28.4
Q ss_pred eeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh
Q 015875 178 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 214 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~ 214 (399)
+++.||||+||||+|+.++..++ ...++...+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~ 36 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRR 36 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHH
Confidence 78999999999999999999988 455665555543
No 319
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.71 E-value=2.6e-05 Score=68.95 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.3
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~ 199 (399)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 320
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.71 E-value=0.0004 Score=61.95 Aligned_cols=106 Identities=22% Similarity=0.186 Sum_probs=64.1
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcC--CceEEEeccch---hhhh-hchhHHHHHHHHHHHHcCCCEEEEEecCCc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSEL---VQKY-VGEGARMVRELFQMARSKKACIVFFDEVDA 245 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~--~~~i~v~~s~l---~~~~-~g~~~~~v~~~f~~a~~~~p~il~iDEiD~ 245 (399)
+.+...+.|.||+|+|||||++.++.... .--+.+++..+ .+.. ...+++ -+-.+..+-...|.++++||--.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~-qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGEL-QRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHH-HHHHHHHHHhcCCCEEEEECCcc
Confidence 35667899999999999999999998542 11233332111 1110 112222 22334445556788999999765
Q ss_pred ccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 246 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 246 l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
- -+......+.+++.++.. ..+..+|++|+..+
T Consensus 101 ~----------LD~~~~~~l~~~l~~~~~---~~~~tiiivsH~~~ 133 (177)
T cd03222 101 Y----------LDIEQRLNAARAIRRLSE---EGKKTALVVEHDLA 133 (177)
T ss_pred c----------CCHHHHHHHHHHHHHHHH---cCCCEEEEEECCHH
Confidence 3 267777777777776531 22245677776643
No 321
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.70 E-value=0.0012 Score=61.52 Aligned_cols=133 Identities=17% Similarity=0.271 Sum_probs=77.9
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCC--ceEEEeccchhhhh--------h------chhHHHHH---H-HHHHHH-
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQKY--------V------GEGARMVR---E-LFQMAR- 231 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~--~~i~v~~s~l~~~~--------~------g~~~~~v~---~-~f~~a~- 231 (399)
+.|-.+.+.|++|||||+++..+...+.. ..+.+-++.....+ + .+.+..+. . +-+...
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 44567999999999999999999876543 22222222211111 0 00111111 1 111111
Q ss_pred --c---CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeE
Q 015875 232 --S---KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRK 306 (399)
Q Consensus 232 --~---~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~ 306 (399)
. ..+.+|+|||+.. ...-+..+.+++.. ...-++.+|..+.....+++.++. -.+..
T Consensus 91 ~~~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~ 152 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD------------KKLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYF 152 (241)
T ss_pred hcccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEE
Confidence 1 2367999999742 11123345566654 335578899999999999999877 67777
Q ss_pred EEecCCCHHHHHHHHHHH
Q 015875 307 VEFGLPDLESRTQIFKIH 324 (399)
Q Consensus 307 i~~~~P~~~er~~Il~~~ 324 (399)
+-++ .+..+..-|++..
T Consensus 153 i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 153 IIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEec-CcHHHHHHHHHhc
Confidence 7675 4666665555544
No 322
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.69 E-value=0.00081 Score=68.28 Aligned_cols=194 Identities=13% Similarity=0.128 Sum_probs=96.0
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh-------h--------hhc-----hhHHHHHHHHHH
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-------K--------YVG-----EGARMVRELFQM 229 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~-------~--------~~g-----~~~~~v~~~f~~ 229 (399)
.+|..++|+|++|+|||+++..+|..+ +..+..+++..+.. . +.+ .....++..++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 357789999999999999999999865 44555555433211 0 011 112234445555
Q ss_pred HHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE-ecCCCCCCCcc--ccCCCCceeE
Q 015875 230 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM-ATNRPDTLDPA--LLRPGRLDRK 306 (399)
Q Consensus 230 a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~-atn~~~~ld~a--l~r~gRf~~~ 306 (399)
+... .+|+||....+.. +......+..+.... ....+++++ ++...+.++.+ +...-.++ .
T Consensus 173 ~~~~--DvVIIDTAGr~~~---------d~~lm~El~~l~~~~----~pdevlLVvda~~gq~av~~a~~F~~~l~i~-g 236 (437)
T PRK00771 173 FKKA--DVIIVDTAGRHAL---------EEDLIEEMKEIKEAV----KPDEVLLVIDATIGQQAKNQAKAFHEAVGIG-G 236 (437)
T ss_pred hhcC--CEEEEECCCcccc---------hHHHHHHHHHHHHHh----cccceeEEEeccccHHHHHHHHHHHhcCCCC-E
Confidence 5443 6999999876522 222222233332221 223343443 33322222211 11100111 2
Q ss_pred EEecCCCHHHHHH-HHHHHHh-ccC---------C--CCcccHHHHHHHCCCCcHHHHHHHHHHHHHH---------HHH
Q 015875 307 VEFGLPDLESRTQ-IFKIHTR-TMN---------C--ERDIRFELLARLCPNSTGADIRSVCTEAGMF---------AIR 364 (399)
Q Consensus 307 i~~~~P~~~er~~-Il~~~~~-~~~---------~--~~~~~~~~la~~~~g~sg~di~~l~~~A~~~---------A~~ 364 (399)
+-+.-.|...|.. +|..... +.+ + -...+.+.++.+.-| -+|+..++..|... +.+
T Consensus 237 vIlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg--mgd~~~l~e~~~~~~~~~~~~~~~~~ 314 (437)
T PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG--MGDLESLLEKVEEALDEEEEEKDVEK 314 (437)
T ss_pred EEEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC--CCChHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344444444433 2222221 111 1 123456777766543 24666666655432 212
Q ss_pred HcCCCccHHHHHHHHHHHHh
Q 015875 365 ARRKTVTEKDFLDAVNKVIK 384 (399)
Q Consensus 365 ~~~~~It~ed~~~ai~~v~~ 384 (399)
-.....|.+||.+-++.+.+
T Consensus 315 ~~~~~f~l~d~~~q~~~~~k 334 (437)
T PRK00771 315 MMKGKFTLKDMYKQLEAMNK 334 (437)
T ss_pred HHcCCcCHHHHHHHHHHHHh
Confidence 23456899999998887754
No 323
>PRK04040 adenylate kinase; Provisional
Probab=97.68 E-value=0.00042 Score=62.49 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=25.1
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc--CCce
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT--DACF 203 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~--~~~~ 203 (399)
++.++++|+||||||++++.+++.+ +..+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 4579999999999999999999998 4444
No 324
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.67 E-value=0.00034 Score=60.13 Aligned_cols=102 Identities=16% Similarity=0.227 Sum_probs=61.7
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcCC--ceEEEeccc---hhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSE---LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA 245 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~~--~~i~v~~s~---l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~ 245 (399)
.+.+...+.|.||+|+|||+|+++++..... --+.++... ++.. ...+++ -+-.+..+-..+|.++++||-..
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS~G~~-~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LSGGEK-MRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CCHHHH-HHHHHHHHHhcCCCEEEEeCCcc
Confidence 3466778999999999999999999986421 112222110 0000 111121 22233444556788999999765
Q ss_pred ccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 246 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 246 l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
-. +......+.+++.++. ..+|++|+.++
T Consensus 100 ~L----------D~~~~~~l~~~l~~~~-------~til~~th~~~ 128 (144)
T cd03221 100 HL----------DLESIEALEEALKEYP-------GTVILVSHDRY 128 (144)
T ss_pred CC----------CHHHHHHHHHHHHHcC-------CEEEEEECCHH
Confidence 32 5666777777777641 25777777654
No 325
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.66 E-value=0.00046 Score=65.64 Aligned_cols=94 Identities=21% Similarity=0.270 Sum_probs=60.5
Q ss_pred CccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC---CceEEEe-ccchhh
Q 015875 138 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVI-GSELVQ 213 (399)
Q Consensus 138 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~---~~~i~v~-~s~l~~ 213 (399)
.++++++-..+..+.+++++.. +...++|.||+|+||||+++++..... ..++.+. ..|+.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~--------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK--------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 4567787777788888777653 233589999999999999999987663 2334431 222211
Q ss_pred h-----hhch-hHHHHHHHHHHHHcCCCEEEEEecCCc
Q 015875 214 K-----YVGE-GARMVRELFQMARSKKACIVFFDEVDA 245 (399)
Q Consensus 214 ~-----~~g~-~~~~v~~~f~~a~~~~p~il~iDEiD~ 245 (399)
. .+.. ........+..+....|++|+++|+..
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 0 1111 112245556666678999999999854
No 326
>PHA02774 E1; Provisional
Probab=97.66 E-value=0.00021 Score=73.83 Aligned_cols=38 Identities=29% Similarity=0.489 Sum_probs=29.4
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceE-EEec
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI-RVIG 208 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~~~~i-~v~~ 208 (399)
+++..++++||||||||||++|-+|++.++...+ .+|.
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 4444468999999999999999999999864443 3553
No 327
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.65 E-value=0.00013 Score=66.27 Aligned_cols=34 Identities=32% Similarity=0.413 Sum_probs=24.9
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 208 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~ 208 (399)
.+.+++.||||||||++++.+...+ +..++.+..
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 3468899999999999999988754 455555544
No 328
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.64 E-value=0.00053 Score=61.01 Aligned_cols=108 Identities=17% Similarity=0.201 Sum_probs=66.0
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcC--CceEEEeccchhh------h---h----------------hch--hHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQ------K---Y----------------VGE--GAR 221 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~--~~~i~v~~s~l~~------~---~----------------~g~--~~~ 221 (399)
.+.++..+.|.||+|+|||+|++.++.... .--+.+++..+.. . | ... ...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~ 103 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGE 103 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHH
Confidence 456777899999999999999999998642 1122333322110 0 0 000 011
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 015875 222 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 293 (399)
Q Consensus 222 ~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 293 (399)
..+-.+..+-...|.++++||-..-. +......+.+++.++. . +..+|++|+.++.+
T Consensus 104 ~qrv~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 160 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVL----K-DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 22233444555788899999976542 6677788888887763 2 34577777765543
No 329
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=0.0005 Score=59.77 Aligned_cols=106 Identities=24% Similarity=0.349 Sum_probs=64.5
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcCC--ceEEEeccchhh-------hh------hchhHHHHHHHHHHHHcCCCE
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQ-------KY------VGEGARMVRELFQMARSKKAC 236 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~~--~~i~v~~s~l~~-------~~------~g~~~~~v~~~f~~a~~~~p~ 236 (399)
+.+...+.|.||+|+|||+|+++++..... --+.++...+.. .. ...+++ .+-.+..+-...|.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~-~r~~l~~~l~~~~~ 100 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQR-QRVALARALLLNPD 100 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHH-HHHHHHHHHhcCCC
Confidence 456678999999999999999999986532 223344332211 00 111221 22233444445678
Q ss_pred EEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 015875 237 IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 292 (399)
Q Consensus 237 il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ 292 (399)
++++||...-+ |......+.+++.++.. . +..+|++|+..+.
T Consensus 101 i~ilDEp~~~l----------D~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~ 142 (157)
T cd00267 101 LLLLDEPTSGL----------DPASRERLLELLRELAE---E-GRTVIIVTHDPEL 142 (157)
T ss_pred EEEEeCCCcCC----------CHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHH
Confidence 99999987542 56667777777776532 2 3457777776543
No 330
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.64 E-value=0.00045 Score=65.46 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=29.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh---cCCceEEEec
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIG 208 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~---~~~~~i~v~~ 208 (399)
|+++...++++||||||||+++-.++.. .+.+.+.++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 7788889999999999999999988763 2455555553
No 331
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.63 E-value=0.00019 Score=66.40 Aligned_cols=108 Identities=21% Similarity=0.265 Sum_probs=64.4
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh---c-CCceEEEeccchhhhh-------------------------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR---T-DACFIRVIGSELVQKY------------------------------- 215 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~---~-~~~~i~v~~s~l~~~~------------------------------- 215 (399)
|++++..+|+.||||+|||+++..++.. . +.+.+.+...+-....
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 7888899999999999999999987643 2 7777777653321110
Q ss_pred --hchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 216 --VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 216 --~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
..........+...+....+.+++||-+..+.... ........+..+...+. ..++.+|+++.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~------~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYD------DPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS------SGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC------CHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 01123334444445555666899999999882211 13334445555555553 23455555555
No 332
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.63 E-value=0.00045 Score=62.76 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.9
Q ss_pred CCC-CceeEeCCCCCcHHHHHHHHH
Q 015875 173 DPP-KGVLCYGPPGTGKTLLARAVA 196 (399)
Q Consensus 173 ~~~-~~vLL~GppGtGKT~larala 196 (399)
.++ +.++|.||.|+|||++.+.++
T Consensus 25 ~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 25 GENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred CCCceEEEEECCCCCChHHHHHHHH
Confidence 344 469999999999999999998
No 333
>PHA02624 large T antigen; Provisional
Probab=97.63 E-value=0.00019 Score=74.45 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=73.0
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 250 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r 250 (399)
|++..+.++|+||||||||+++.+|++.++...+.++++.-... |..--.....+.+||++-.-....
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 56666789999999999999999999999766777875542211 222222233489999986543321
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCC-C------CCCC-----eEEEEecCCCCCCCccccCCCCceeEEEecC
Q 015875 251 FDDGVGGDNEVQRTMLEIVNQLDGF-D------ARGN-----IKVLMATNRPDTLDPALLRPGRLDRKVEFGL 311 (399)
Q Consensus 251 ~~~~~~~~~~~~~~l~~ll~~l~~~-~------~~~~-----v~vI~atn~~~~ld~al~r~gRf~~~i~~~~ 311 (399)
.+-.+|. ...-+..+=+.+||. . .... -..|.|||. ..++..+.- ||..++.|..
T Consensus 495 ~~Lp~G~---~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSGQ---GMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ccCCccc---ccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 1100000 001112233445553 0 0001 236778886 457778877 9988888875
No 334
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.62 E-value=0.00059 Score=60.45 Aligned_cols=105 Identities=22% Similarity=0.367 Sum_probs=64.5
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcC--CceEEEeccchh--------h-------h---h--------hchhHHHH
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELV--------Q-------K---Y--------VGEGARMV 223 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~--~~~i~v~~s~l~--------~-------~---~--------~g~~~~~v 223 (399)
+.+...+.|.||+|+|||+|++.++.... .--+.+++..+. . . + ... ...-
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~-G~~q 103 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSG-GQRQ 103 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCH-HHHH
Confidence 45666799999999999999999998542 111222221110 0 0 0 011 1122
Q ss_pred HHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 224 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 224 ~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
+-.+..+-...|.++++||--.- -+......+.+++..+.. . +..+|++|+..+
T Consensus 104 rv~la~al~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~ 157 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSH----------LDVEGERALNQAIAALKA---A-GATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccc----------cCHHHHHHHHHHHHHHHh---C-CCEEEEEeCCHH
Confidence 33444555678889999997643 267777888888877632 2 345777777654
No 335
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.61 E-value=0.00027 Score=68.39 Aligned_cols=70 Identities=23% Similarity=0.258 Sum_probs=46.3
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcC-----CceEEEe-ccchhh-------hhhchhHHHHHHHHHHHHcCCCEEEEEe
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTD-----ACFIRVI-GSELVQ-------KYVGEGARMVRELFQMARSKKACIVFFD 241 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~-----~~~i~v~-~s~l~~-------~~~g~~~~~v~~~f~~a~~~~p~il~iD 241 (399)
.+++++.||+|+|||++++++++... ..++.+. ..|+.- ...+........++..+....|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 46899999999999999999998752 2333331 112110 0111112245667777778899999999
Q ss_pred cCC
Q 015875 242 EVD 244 (399)
Q Consensus 242 EiD 244 (399)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 985
No 336
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.00049 Score=60.83 Aligned_cols=107 Identities=27% Similarity=0.381 Sum_probs=65.8
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcCC--ceEEEeccchhh-------h---h----------------hchhHHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQ-------K---Y----------------VGEGARM 222 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~~--~~i~v~~s~l~~-------~---~----------------~g~~~~~ 222 (399)
.+.+...+.|.||+|+|||+|++.++..... --+.+++..+.. . + ...++ .
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~-~ 102 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQ-R 102 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHH-H
Confidence 3567778999999999999999999986421 112232221110 0 0 00011 1
Q ss_pred HHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 015875 223 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 293 (399)
Q Consensus 223 v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 293 (399)
-+-.+..+-...|.++++||--.- -+......+.+++.++. . +..+|++|+.++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 158 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSA----------LDPETEALILEALRALA----K-GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcC----------CCHHHHHHHHHHHHHhc----C-CCEEEEEecCHHHH
Confidence 122344445578899999996543 26677788888887763 1 25677888876544
No 337
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.00021 Score=66.84 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 015875 224 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 292 (399)
Q Consensus 224 ~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ 292 (399)
|-++..|-...|.++++||--. +-|...+..+.++|.++.. . ++.|++.|.....
T Consensus 147 RV~lARAL~~~p~lllLDEP~~----------gvD~~~~~~i~~lL~~l~~---e-g~tIl~vtHDL~~ 201 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFT----------GVDVAGQKEIYDLLKELRQ---E-GKTVLMVTHDLGL 201 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcc----------cCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCcHH
Confidence 3344555667899999999532 2377889999999998862 3 6678888877543
No 338
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.61 E-value=0.00084 Score=60.25 Aligned_cols=100 Identities=18% Similarity=0.186 Sum_probs=54.8
Q ss_pred eeEeCCCCCcHHHHHHHHHH-----hcCCc--------------eEEEeccchhhhhhchhHHHHHHHHHHHH-cCCCEE
Q 015875 178 VLCYGPPGTGKTLLARAVAN-----RTDAC--------------FIRVIGSELVQKYVGEGARMVRELFQMAR-SKKACI 237 (399)
Q Consensus 178 vLL~GppGtGKT~larala~-----~~~~~--------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~-~~~p~i 237 (399)
++|+||.|+|||+++|.++- ..|.+ +..+...+-.....+......+++...+. ...|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 22322 11222222222223333333333332222 247889
Q ss_pred EEEecCCcccCCccCCCCCCChH-HHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 238 VFFDEVDAIGGARFDDGVGGDNE-VQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 238 l~iDEiD~l~~~r~~~~~~~~~~-~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
+++||+..-. +.. ....+..+++.+.. ..+..+|++|+..
T Consensus 82 lllDEp~~g~----------d~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~ 122 (185)
T smart00534 82 VLLDELGRGT----------STYDGVAIAAAVLEYLLE---KIGALTLFATHYH 122 (185)
T ss_pred EEEecCCCCC----------CHHHHHHHHHHHHHHHHh---cCCCeEEEEecHH
Confidence 9999986642 333 23333455555431 1244577788765
No 339
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.60 E-value=0.00045 Score=57.22 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=20.7
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhc
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~ 199 (399)
++++++||+|+|||+++-.++...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999988888755
No 340
>PRK06762 hypothetical protein; Provisional
Probab=97.60 E-value=0.0002 Score=62.82 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=31.8
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 213 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~ 213 (399)
|.-++|.|+||+||||+|+.+++.++..++.++...+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 456899999999999999999999866666777655544
No 341
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.60 E-value=0.0001 Score=66.93 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=41.6
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCC----ceEEEec-cchh---------hhhhchhHHHHHHHHHHHHcCCCEEEEEec
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDA----CFIRVIG-SELV---------QKYVGEGARMVRELFQMARSKKACIVFFDE 242 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~----~~i~v~~-s~l~---------~~~~g~~~~~v~~~f~~a~~~~p~il~iDE 242 (399)
-++|.||+|+||||++++++..+.. .++.+.. .++. +..+|.....+...+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4899999999999999999887642 2222211 1111 111122222344455566667899999999
Q ss_pred C
Q 015875 243 V 243 (399)
Q Consensus 243 i 243 (399)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 7
No 342
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.60 E-value=0.00065 Score=61.78 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.2
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHH
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~ 197 (399)
++..++|.||.|+|||++.+.++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 345699999999999999999993
No 343
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.59 E-value=0.00075 Score=62.32 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=63.6
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhh------c-------------------h----
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV------G-------------------E---- 218 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~------g-------------------~---- 218 (399)
|+++...+++.|+||+|||+++..++... +.+.+.++..+-..... | +
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 77888889999999999999999887642 66666665533221100 0 0
Q ss_pred hHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 219 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 219 ~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
.......+...+....+..++||-+..+-..- +.+......+..++..+. ..++.++++++.
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~-----~~~~~~r~~l~~l~~~lk----~~~~tvll~s~~ 153 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETLF-----DDDAERRTELFRFYSSLR----ETGVTTILTSEA 153 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhhc-----CCHHHHHHHHHHHHHHHH----hCCCEEEEEEcc
Confidence 00111122223344567789999888762110 113444555666777664 234556666643
No 344
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.59 E-value=0.00012 Score=72.19 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=44.9
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCC----ceEEEe-ccchh---------hhhhchhHHHHHHHHHHHHcCCCEEEE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDA----CFIRVI-GSELV---------QKYVGEGARMVRELFQMARSKKACIVF 239 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~----~~i~v~-~s~l~---------~~~~g~~~~~v~~~f~~a~~~~p~il~ 239 (399)
+...+++.||+|+||||+++++.+.... .++.+. ..++. +...|.........+..+....|.+|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 3456999999999999999999986542 233321 11211 111222222344555666678999999
Q ss_pred EecCC
Q 015875 240 FDEVD 244 (399)
Q Consensus 240 iDEiD 244 (399)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99984
No 345
>PRK10536 hypothetical protein; Provisional
Probab=97.58 E-value=0.00077 Score=63.30 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=31.4
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
..|-+.......+..++.. ...+++.||+|||||+||.+++-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~---------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES---------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHHHHHHHHHHhc---------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 3355666665555555532 237999999999999999999984
No 346
>PRK04328 hypothetical protein; Provisional
Probab=97.58 E-value=0.00094 Score=62.92 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=29.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh---cCCceEEEec
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIG 208 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~---~~~~~i~v~~ 208 (399)
|++++..+|++||||||||+++..++.+ .+.+.+.++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 7788889999999999999998877653 2455555544
No 347
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.58 E-value=0.00049 Score=60.12 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.6
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
.+.+...++|.||+|||||+|.|++|..
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 3456778999999999999999999984
No 348
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.57 E-value=0.0012 Score=61.13 Aligned_cols=38 Identities=34% Similarity=0.362 Sum_probs=29.6
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh---cCCceEEEec
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIG 208 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~---~~~~~i~v~~ 208 (399)
|+++...++++||||+|||+++..++.. .+.+.+.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 7888889999999999999999987643 2445555554
No 349
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.57 E-value=0.00031 Score=68.42 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=67.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh---------cCCceEEEeccchhh-h-------hhch---------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR---------TDACFIRVIGSELVQ-K-------YVGE--------------- 218 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~---------~~~~~i~v~~s~l~~-~-------~~g~--------------- 218 (399)
|++...-+.|+||||+|||.++..+|-. .+...++++..+-+. . ..|.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 6788888999999999999999887732 234667776544110 0 0000
Q ss_pred -hH---HHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 015875 219 -GA---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 287 (399)
Q Consensus 219 -~~---~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 287 (399)
.+ ..+..+........+.+|+||-|-.+......+ .+...+.+..+.+++..+..+....++.||++.
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 11 112222223344567899999999886543221 112233344455666555554455677666654
No 350
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.57 E-value=0.00045 Score=61.65 Aligned_cols=108 Identities=26% Similarity=0.344 Sum_probs=64.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcC--CceEEEeccchhh-------hhh----------c----------h--h
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQ-------KYV----------G----------E--G 219 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~--~~~i~v~~s~l~~-------~~~----------g----------~--~ 219 (399)
.+.+...+.|.||+|+|||+|++.++.... .--+.+++..+.. ..+ | . +
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 346677899999999999999999998642 1223333322110 000 0 0 0
Q ss_pred HHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 220 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 220 ~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
...-+-.+..+-...|.++++||--.-. +......+.+++..+.. ..+..+|++|+.++
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~L----------D~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~ 159 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHL----------DIAHQIELLELLRRLAR---ERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 1111223333445678899999976432 56677778888877631 21345777777654
No 351
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.57 E-value=8.4e-05 Score=70.74 Aligned_cols=101 Identities=18% Similarity=0.267 Sum_probs=61.0
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC---ceEEEe-cc
Q 015875 134 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---CFIRVI-GS 209 (399)
Q Consensus 134 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~---~~i~v~-~s 209 (399)
.....++++++-.....+.+.+.+... +.....+++.||+|+|||++++++...... .++.+. ..
T Consensus 97 ~~~~~sle~l~~~~~~~~~~~~~l~~~-----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~ 165 (270)
T PF00437_consen 97 SSKPFSLEDLGESGSIPEEIAEFLRSA-----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPP 165 (270)
T ss_dssp TSS--CHCCCCHTHHCHHHHHHHHHHC-----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS
T ss_pred ccccccHhhccCchhhHHHHHHHHhhc-----------cccceEEEEECCCccccchHHHHHhhhccccccceEEecccc
Confidence 345667888877766666666666542 123568999999999999999999987633 333332 22
Q ss_pred chhhhh-------hchhHHHHHHHHHHHHcCCCEEEEEecCCc
Q 015875 210 ELVQKY-------VGEGARMVRELFQMARSKKACIVFFDEVDA 245 (399)
Q Consensus 210 ~l~~~~-------~g~~~~~v~~~f~~a~~~~p~il~iDEiD~ 245 (399)
|+.-.. .........+++..+....|++|+++|+-.
T Consensus 166 E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 166 ELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp -S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred ceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 221110 011222345666677778899999999864
No 352
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.56 E-value=0.00085 Score=59.08 Aligned_cols=103 Identities=29% Similarity=0.409 Sum_probs=62.6
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcCC--ceEEEe--------ccc--hh-----hh----h---hchhHHHHHHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVI--------GSE--LV-----QK----Y---VGEGARMVREL 226 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~~--~~i~v~--------~s~--l~-----~~----~---~g~~~~~v~~~ 226 (399)
.+.+...+.|.||+|+|||+|++.++..... --+.++ ..+ +. .. . ...+ ...+-.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G-~~~rv~ 101 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGG-EQQRLA 101 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHH-HHHHHH
Confidence 3467778999999999999999999986421 001111 111 11 00 0 1111 122233
Q ss_pred HHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 227 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 227 f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
+..+-...|.++++||-..-. +...+..+.+++..+ +..+|++|+.+.
T Consensus 102 laral~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSAL----------DEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHHHcCCCEEEEECCcccc----------CHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 444555788899999976542 667777888888764 245777777654
No 353
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.55 E-value=0.0001 Score=61.53 Aligned_cols=50 Identities=24% Similarity=0.375 Sum_probs=39.9
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCC--ceeEeCCCCCcHHHHHHHHHHhc
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPK--GVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~--~vLL~GppGtGKT~larala~~~ 199 (399)
.|.|+.-+.+.+..++...+..+ .|.+ -+-|+|+||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 48999999999999888755432 3334 45589999999999999999974
No 354
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.55 E-value=0.00046 Score=61.10 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=62.6
Q ss_pred eeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhh-----------------hchhHHHHHHHHHHHHcCCCEEEEE
Q 015875 178 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY-----------------VGEGARMVRELFQMARSKKACIVFF 240 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~-----------------~g~~~~~v~~~f~~a~~~~p~il~i 240 (399)
+|++|++|+|||++|..++...+.+.+++...+-...- ..+....+.+.+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 68999999999999999998877777777544322110 112223344443222 14669999
Q ss_pred ecCCcccCCccCCCCC-CChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 241 DEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 241 DEiD~l~~~r~~~~~~-~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
|-+..+..+-...+.. ....+...+..+++.+.. .+..+|.++|..
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~----~~~~~viVsnEv 126 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN----KPGTLILVSNEV 126 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc----CCCcEEEEECCc
Confidence 9998876554332111 012334555566666653 233456667653
No 355
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.55 E-value=0.00036 Score=66.33 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=29.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEec
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 208 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~ 208 (399)
|+.+...++|.|+||+|||+++..++... +..++.++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 66777789999999999999999887653 555555554
No 356
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.54 E-value=0.00036 Score=68.63 Aligned_cols=116 Identities=19% Similarity=0.187 Sum_probs=67.4
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---------CCceEEEeccchh------hh--hhch---------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELV------QK--YVGE--------------- 218 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---------~~~~i~v~~s~l~------~~--~~g~--------------- 218 (399)
|++...-..|+||||||||.|+..+|-.. +...++++..+-+ +. ..|-
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 67778889999999999999999887321 2456677654310 00 0000
Q ss_pred -hH---HHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 015875 219 -GA---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 287 (399)
Q Consensus 219 -~~---~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 287 (399)
.+ ..+..+........+.+|+||-|-.+......+ .+...+-++.+.+++..|..+....++.||++.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~-rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG-RGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 01 112222223344568899999999886543221 122234455566666655544445566666654
No 357
>PRK13948 shikimate kinase; Provisional
Probab=97.54 E-value=0.00034 Score=62.69 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=31.6
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
+++..++|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45688999999999999999999999999998655
No 358
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.00063 Score=62.28 Aligned_cols=72 Identities=24% Similarity=0.238 Sum_probs=46.2
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcC--------CceEEEec-cchhhhhhchh-------------HHHHHHHHHHHHc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTD--------ACFIRVIG-SELVQKYVGEG-------------ARMVRELFQMARS 232 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~--------~~~i~v~~-s~l~~~~~g~~-------------~~~v~~~f~~a~~ 232 (399)
..+.|+.|||||||||+.|-+|+-+. ..+..++. +++.+-..|.. .-.-..++...+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 34689999999999999999998542 22333332 33333221111 1112235556678
Q ss_pred CCCEEEEEecCCcc
Q 015875 233 KKACIVFFDEVDAI 246 (399)
Q Consensus 233 ~~p~il~iDEiD~l 246 (399)
+.|.|+++|||...
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 99999999999764
No 359
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.001 Score=66.53 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.8
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.|..++|+||+|+||||++..+|..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999754
No 360
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00037 Score=65.41 Aligned_cols=106 Identities=20% Similarity=0.224 Sum_probs=65.0
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc--eEEEeccchh-------------------------hhhhchh--HH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--FIRVIGSELV-------------------------QKYVGEG--AR 221 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~~~--~i~v~~s~l~-------------------------~~~~g~~--~~ 221 (399)
.+.....+-|.|++||||||++|.+..-.... -+...+.++. .+|..+. .+
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 34567789999999999999999999854321 1222322211 1111111 11
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 222 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 222 ~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
.-|-.+..|....|.+++.||.-+.+ +..+|..++.+|..+.. ..++..+..|..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq~---~~~lt~lFIsHD 169 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQE---ELGLTYLFISHD 169 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHHH---HhCCeEEEEEEE
Confidence 12223444555789999999988774 56788888888877652 234445555543
No 361
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00038 Score=64.22 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=35.2
Q ss_pred HHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 229 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 229 ~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
.|-...|.+|++||.-+.+ |..+|..++.+|.++.. ..+..+|+.|...
T Consensus 154 RAL~~~PklLIlDEptSaL----------D~siQa~IlnlL~~l~~---~~~lt~l~IsHdl 202 (252)
T COG1124 154 RALIPEPKLLILDEPTSAL----------DVSVQAQILNLLLELKK---ERGLTYLFISHDL 202 (252)
T ss_pred HHhccCCCEEEecCchhhh----------cHHHHHHHHHHHHHHHH---hcCceEEEEeCcH
Confidence 3444678999999976653 67889999999988753 3455566666653
No 362
>PRK05973 replicative DNA helicase; Provisional
Probab=97.53 E-value=0.0017 Score=60.49 Aligned_cols=39 Identities=28% Similarity=0.261 Sum_probs=30.8
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEecc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 209 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s 209 (399)
|+.+...++|.|+||+|||+++-.++... |.+.+.++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 77888889999999999999998887643 6666665543
No 363
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.53 E-value=0.00039 Score=74.80 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=66.5
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHH---hcCCceEEEeccchhhh----h------------hchhHHHHHHHHHHHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVAN---RTDACFIRVIGSELVQK----Y------------VGEGARMVRELFQMAR 231 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~---~~~~~~i~v~~s~l~~~----~------------~g~~~~~v~~~f~~a~ 231 (399)
|+++...++|+||||||||+|+..++. ..+...+.++..+-+.. . ....+..+..+-..++
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 678888899999999999999977554 33566666765442220 0 0111222222333345
Q ss_pred cCCCEEEEEecCCcccCC-ccCCCCCC-ChHHH-HHHHHHHHHhcCCCCCCCeEEEEec
Q 015875 232 SKKACIVFFDEVDAIGGA-RFDDGVGG-DNEVQ-RTMLEIVNQLDGFDARGNIKVLMAT 287 (399)
Q Consensus 232 ~~~p~il~iDEiD~l~~~-r~~~~~~~-~~~~~-~~l~~ll~~l~~~~~~~~v~vI~at 287 (399)
...+.+|+||-+..+.+. ..++..+. ....+ +.+.++|..+..+....++.+|+|-
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 567899999999999852 22222111 12233 2233445444443344566666553
No 364
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.53 E-value=0.00054 Score=63.88 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=31.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEec
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 208 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~ 208 (399)
|+.+..-++|.|+||+|||+++..++... +.+++.++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 77888889999999999999999887643 667766664
No 365
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.52 E-value=0.00025 Score=64.37 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=64.5
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 250 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r 250 (399)
|.+....++|.|+.|+|||++.+.|+... +.-+.... . .......+... -++.+||++.+.
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~-----~-~kd~~~~l~~~------~iveldEl~~~~--- 108 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDF-----D-DKDFLEQLQGK------WIVELDELDGLS--- 108 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccC-----C-CcHHHHHHHHh------HheeHHHHhhcc---
Confidence 55566679999999999999999996552 11110000 0 01111111111 289999999983
Q ss_pred cCCCCCCChHHHHHHHHHHHHh-cCCC---------CCCCeEEEEecCCCCCC-CccccCCCCceeEEEecC
Q 015875 251 FDDGVGGDNEVQRTMLEIVNQL-DGFD---------ARGNIKVLMATNRPDTL-DPALLRPGRLDRKVEFGL 311 (399)
Q Consensus 251 ~~~~~~~~~~~~~~l~~ll~~l-~~~~---------~~~~v~vI~atn~~~~l-d~al~r~gRf~~~i~~~~ 311 (399)
......+..++..- +.+. -....++|+|||..+-| |+.--| || ..|++..
T Consensus 109 --------k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 109 --------KKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred --------hhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 23345666666542 1111 11246689999987755 444545 77 5666654
No 366
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.52 E-value=0.0004 Score=67.83 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=65.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---------CCceEEEeccchhh--h------hhch---------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQ--K------YVGE--------------- 218 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---------~~~~i~v~~s~l~~--~------~~g~--------------- 218 (399)
|++.+.-++|+||||+|||+++-.+|-.. +...++++..+-+. . ..|.
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 67888889999999999999999998652 23567776644110 0 0000
Q ss_pred -h---HHHHHHHHHHHHc-CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 219 -G---ARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 219 -~---~~~v~~~f~~a~~-~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
. ...+..+...... ..+.+|+||=|-.+......+. +...+.+..+.+++..+..+....++.+|++..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGR-GNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 0 0112222222333 5677999999998754321111 111222444555555444443455677777654
No 367
>PRK03839 putative kinase; Provisional
Probab=97.52 E-value=8e-05 Score=66.37 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=27.7
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
.++|.|+||+||||+++.+|+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999886543
No 368
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.52 E-value=0.00045 Score=61.21 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=59.9
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhh-----------------chhHHHHHHHHHHHHcCCCEEEE
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYV-----------------GEGARMVRELFQMARSKKACIVF 239 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~-----------------g~~~~~v~~~f~~a~~~~p~il~ 239 (399)
.+|+.|+||+|||++|..++..++.+++.+........-. -+....+..++... ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 4899999999999999999999887766665433221100 00011233333221 23356899
Q ss_pred EecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 240 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 240 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
||-+..+..+....+. .......+.++++.+.. .+..+|+++|.
T Consensus 82 ID~Lt~~~~n~l~~~~--~~~~~~~l~~li~~L~~----~~~tvVlVs~E 125 (170)
T PRK05800 82 VDCLTTWVTNLLFEEG--EEAIAAEIDALLAALQQ----LPAKIILVTNE 125 (170)
T ss_pred ehhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHc----CCCCEEEEEcC
Confidence 9999888554322110 13344455566666653 22235555664
No 369
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=0.00059 Score=60.44 Aligned_cols=106 Identities=21% Similarity=0.308 Sum_probs=63.8
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcCC--ceEEEeccchh--------------h---hhhc---------hhHHHH
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELV--------------Q---KYVG---------EGARMV 223 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~~--~~i~v~~s~l~--------------~---~~~g---------~~~~~v 223 (399)
+.+...+.|.||+|+|||+|++.++..... --+.+++..+. + .+.+ .+....
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~q 102 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQ 102 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHH
Confidence 456677999999999999999999985311 11112111110 0 0000 001112
Q ss_pred HHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 224 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 224 ~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
+-.+..+-...|.++++||-..-. |......+.+++.++.. . +..+|++|+.++
T Consensus 103 rv~laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~~---~-g~tiii~th~~~ 156 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGL----------DPESRREFWELLRELKK---E-GKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHH---C-CCEEEEECCCHH
Confidence 234445556788899999976543 67778888888887642 2 345777777654
No 370
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.51 E-value=0.00089 Score=61.96 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=57.1
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHH-h----cCCc--------------eEEEeccchhhhhhchhHHH---HHHHHHHH
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVAN-R----TDAC--------------FIRVIGSELVQKYVGEGARM---VRELFQMA 230 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~-~----~~~~--------------~i~v~~s~l~~~~~g~~~~~---v~~~f~~a 230 (399)
.+...++|.||.|+|||++.+.++. . .|.. |.++...+-.....+.+... +..+++.+
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~ 108 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNC 108 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhC
Confidence 3455789999999999999999987 2 1221 11121121111111122222 33344333
Q ss_pred HcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 231 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 231 ~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
..+++++|||+.+=.. ..+.......+++.+.. ..+..+|++|...+
T Consensus 109 --~~~sLvllDE~~~gT~---------~~d~~~i~~~il~~l~~---~~~~~~i~~TH~~~ 155 (222)
T cd03287 109 --TSRSLVILDELGRGTS---------THDGIAIAYATLHYLLE---EKKCLVLFVTHYPS 155 (222)
T ss_pred --CCCeEEEEccCCCCCC---------hhhHHHHHHHHHHHHHh---ccCCeEEEEcccHH
Confidence 4578999999865321 12333333445555432 23456888888764
No 371
>PRK13947 shikimate kinase; Provisional
Probab=97.50 E-value=9.5e-05 Score=65.16 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=28.2
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
+++|.|+||||||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999986544
No 372
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.49 E-value=0.00073 Score=67.28 Aligned_cols=115 Identities=17% Similarity=0.268 Sum_probs=63.2
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCc------eEEEecc---c---hhhh--------hhchhHHH----HHHHHH
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDAC------FIRVIGS---E---LVQK--------YVGEGARM----VRELFQ 228 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~------~i~v~~s---~---l~~~--------~~g~~~~~----v~~~f~ 228 (399)
.....++|.||||+|||++++.+++..... ++.+... + +... ..++.... ...+.+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 445669999999999999999999975322 3333211 1 1111 11211111 112222
Q ss_pred HH----HcCCCEEEEEecCCcccCCccC--------CCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 015875 229 MA----RSKKACIVFFDEVDAIGGARFD--------DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 287 (399)
Q Consensus 229 ~a----~~~~p~il~iDEiD~l~~~r~~--------~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 287 (399)
.| ..+...+|||||++++.....+ .+.|-++.+...+-.++..-......+.+.+|+|.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~arAqrei~~~~G~~~s~G~~~~~~~~~~~~~~~a~~~~~~GSiT~~~Tv 316 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 316 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHHHHHHHhHhhcCCCCCCCcChhhhcccHHHHhhcCCCCCCcchhheEEE
Confidence 22 2345569999999988532211 11234555666666777665544445566555554
No 373
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.49 E-value=0.0013 Score=60.15 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.0
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHH
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~ 197 (399)
....++|.||+|+|||++.+.++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999974
No 374
>PRK13695 putative NTPase; Provisional
Probab=97.49 E-value=0.0014 Score=57.97 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.4
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~ 199 (399)
.++|.|++|+|||++++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988764
No 375
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.47 E-value=0.00028 Score=62.13 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=29.5
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
.+++|.|++|+||||+.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998665
No 376
>PRK00625 shikimate kinase; Provisional
Probab=97.46 E-value=0.00011 Score=65.25 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=28.5
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
.++|.|.||+|||++++.+|++++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999987665
No 377
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.45 E-value=0.0033 Score=64.42 Aligned_cols=149 Identities=22% Similarity=0.213 Sum_probs=80.5
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhC--CCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEE-eccchhh------
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLG--IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV-IGSELVQ------ 213 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g--~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v-~~s~l~~------ 213 (399)
|-|.+.+++.|.-.+-. .-|.-...| ++..-++|+.|.|.+.||-|.|++.+-....+-.. .+|.=++
T Consensus 303 I~GH~~vKkAillLLlG---GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 303 IYGHDYVKKAILLLLLG---GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred cccHHHHHHHHHHHHhc---cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 55666666665544422 111111112 23344799999999999999999988542221110 0010000
Q ss_pred hhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEE
Q 015875 214 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLM 285 (399)
Q Consensus 214 ~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~ 285 (399)
.-...+++.+.. ...-....+|++|||||++. .--..++-+++++-. |+ .-+.++.||+
T Consensus 380 tD~eTGERRLEA--GAMVLADRGVVCIDEFDKMs-----------DiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlA 446 (818)
T KOG0479|consen 380 TDQETGERRLEA--GAMVLADRGVVCIDEFDKMS-----------DIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLA 446 (818)
T ss_pred eccccchhhhhc--CceEEccCceEEehhccccc-----------chhHHHHHHHHhcceEEeEeccchhhhccceeeee
Confidence 001112232211 00011344599999999992 222445566766521 11 2245788999
Q ss_pred ecCCCC-------------CCCccccCCCCceeEEEe
Q 015875 286 ATNRPD-------------TLDPALLRPGRLDRKVEF 309 (399)
Q Consensus 286 atn~~~-------------~ld~al~r~gRf~~~i~~ 309 (399)
|+|+.. .|+..|++ |||..+.+
T Consensus 447 AANPvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~ 481 (818)
T KOG0479|consen 447 AANPVYGQYDQSKTPMENIGLPDSLLS--RFDLLFVV 481 (818)
T ss_pred ecCccccccCCCCChhhccCCcHHHHh--hhcEEEEE
Confidence 999742 46778998 99885543
No 378
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.45 E-value=0.00023 Score=63.31 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=35.1
Q ss_pred HHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 015875 230 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 293 (399)
Q Consensus 230 a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 293 (399)
|--+.|.+|+-||--. .-+++....++++++++.. .+..|++||...+.+
T Consensus 151 AiV~~P~vLlADEPTG----------NLDp~~s~~im~lfeeinr----~GtTVl~ATHd~~lv 200 (223)
T COG2884 151 AIVNQPAVLLADEPTG----------NLDPDLSWEIMRLFEEINR----LGTTVLMATHDLELV 200 (223)
T ss_pred HHccCCCeEeecCCCC----------CCChHHHHHHHHHHHHHhh----cCcEEEEEeccHHHH
Confidence 3346788999999432 1378888888999988763 455688888765433
No 379
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.45 E-value=0.00054 Score=66.61 Aligned_cols=117 Identities=15% Similarity=0.178 Sum_probs=64.5
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---------CCceEEEeccchh-hh----h---hchh--------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELV-QK----Y---VGEG-------------- 219 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---------~~~~i~v~~s~l~-~~----~---~g~~-------------- 219 (399)
|++.+.-++|+||||+|||+++-.+|-.. +...++++..+-+ .. . .|-.
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 67777889999999999999999998652 2367777765411 00 0 0000
Q ss_pred --H---HHHHHHHHHHHcC--CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 220 --A---RMVRELFQMARSK--KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 220 --~---~~v~~~f~~a~~~--~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
. ..+..+....... .+.+|+||=|-.+......+. +...+.++.+.+++..+..+....++.||++..
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~-~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGR-GALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 0 0122333333333 367999999888754322111 111222333444444444333455676666643
No 380
>PTZ00035 Rad51 protein; Provisional
Probab=97.45 E-value=0.00075 Score=66.39 Aligned_cols=116 Identities=14% Similarity=0.199 Sum_probs=66.7
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---------CCceEEEeccchhh---------hhhc---------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQ---------KYVG--------------- 217 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---------~~~~i~v~~s~l~~---------~~~g--------------- 217 (399)
|++...-+.|+||||+|||+++..++-.. +...++++..+.+. .+--
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 77788889999999999999999987532 33455666543211 0000
Q ss_pred hhH---HHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 015875 218 EGA---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 287 (399)
Q Consensus 218 ~~~---~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 287 (399)
..+ ..+..+........+.+|+||=|-.++.....+ .+...+-+..+.+++..+..+....++.||++.
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtN 265 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG-RGELAERQQHLGKFLRALQKLADEFNVAVVITN 265 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC-cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEec
Confidence 001 112222222334567899999999876542211 111223355566666666554445677666553
No 381
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.45 E-value=0.00013 Score=62.97 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=27.4
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
+++|+|+||+|||++|+.++..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4799999999999999999999998877443
No 382
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.44 E-value=0.001 Score=60.43 Aligned_cols=101 Identities=22% Similarity=0.355 Sum_probs=57.4
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc---CCc--eEEEeccchhh-----hh---h---------c-hhHHHHHHHHHHHH
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT---DAC--FIRVIGSELVQ-----KY---V---------G-EGARMVRELFQMAR 231 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~---~~~--~i~v~~s~l~~-----~~---~---------g-~~~~~v~~~f~~a~ 231 (399)
|+-++|.||+|+||||.+-.+|.++ +.. ++..+...... .| . . +.....++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4578999999999999998888754 333 33333222111 00 1 1 12344555666666
Q ss_pred cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 232 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 232 ~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
.....+|+||-...... +.+....+..+++.+. ...+.++++++
T Consensus 81 ~~~~D~vlIDT~Gr~~~---------d~~~~~el~~~~~~~~----~~~~~LVlsa~ 124 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPR---------DEELLEELKKLLEALN----PDEVHLVLSAT 124 (196)
T ss_dssp HTTSSEEEEEE-SSSST---------HHHHHHHHHHHHHHHS----SSEEEEEEEGG
T ss_pred hcCCCEEEEecCCcchh---------hHHHHHHHHHHhhhcC----CccceEEEecc
Confidence 66667999998765421 3444556666666552 33455555443
No 383
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.42 E-value=0.00013 Score=64.82 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
.+-++|.|+||+|||++|+.++..++.+++.++...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 3469999999999999999999998887776654433
No 384
>PRK13949 shikimate kinase; Provisional
Probab=97.40 E-value=0.00014 Score=64.41 Aligned_cols=31 Identities=32% Similarity=0.449 Sum_probs=28.5
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
.++|.|+||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999887765
No 385
>PRK14974 cell division protein FtsY; Provisional
Probab=97.39 E-value=0.0034 Score=61.62 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=45.4
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh-------hh---h----------chhHHHHHHHHHHH
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-------KY---V----------GEGARMVRELFQMA 230 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~-------~~---~----------g~~~~~v~~~f~~a 230 (399)
.|..++|.||+|+||||++..+|..+ +..+..+.+..+.. .+ . +.....+....+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46789999999999999998888754 44444444432111 00 0 11122334444555
Q ss_pred HcCCCEEEEEecCCcc
Q 015875 231 RSKKACIVFFDEVDAI 246 (399)
Q Consensus 231 ~~~~p~il~iDEiD~l 246 (399)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555679999998776
No 386
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.39 E-value=0.00015 Score=64.68 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=29.2
Q ss_pred eeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhh
Q 015875 178 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 215 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~ 215 (399)
+++.||||+||||+|+.+|.+++. ..++..+++.+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr~~ 37 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLRAE 37 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHHHH
Confidence 789999999999999999999975 456666665443
No 387
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.38 E-value=0.00052 Score=66.93 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=67.0
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc------C---CceEEEeccchhhh--------hhch---------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT------D---ACFIRVIGSELVQK--------YVGE--------------- 218 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~------~---~~~i~v~~s~l~~~--------~~g~--------------- 218 (399)
|+.+..-+.++||||+|||+++..++... + ...++++..+.+.. ..+.
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 67788889999999999999999988521 1 25567766552110 0000
Q ss_pred -h---HHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 219 -G---ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 219 -~---~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
. ...+..+........+.+|+||-|-.++.....+. +.....+..|.+++..+..+....++.||++..
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNq 244 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVITNQ 244 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 0 01122222223345688999999998864322111 111123445566666665544456676666543
No 388
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.00014 Score=62.04 Aligned_cols=31 Identities=39% Similarity=0.682 Sum_probs=28.1
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
.++|+.|-||||||+++..+|..++.+++.+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 3799999999999999999999999887755
No 389
>PRK14532 adenylate kinase; Provisional
Probab=97.37 E-value=0.00015 Score=65.02 Aligned_cols=36 Identities=17% Similarity=0.458 Sum_probs=29.4
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 214 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~ 214 (399)
.++|.||||+||||+|+.+|+.++..+ ++..+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHH
Confidence 489999999999999999999998655 455555554
No 390
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.36 E-value=0.00048 Score=69.88 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=63.5
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceE---EE------
Q 015875 136 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI---RV------ 206 (399)
Q Consensus 136 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i---~v------ 206 (399)
...++++++......+.+.+.+.. |..-+|++||+|+|||+...++.++++.+.. .+
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~--------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNR--------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhC--------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 467788899999999999988864 3345889999999999999999998754433 22
Q ss_pred eccchhhhhhchhHH-HHHHHHHHHHcCCCEEEEEecCCc
Q 015875 207 IGSELVQKYVGEGAR-MVRELFQMARSKKACIVFFDEVDA 245 (399)
Q Consensus 207 ~~s~l~~~~~g~~~~-~v~~~f~~a~~~~p~il~iDEiD~ 245 (399)
..+.+.+-.+....+ .....++.+..+.|+||++.||-.
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 112222211111100 122334444568999999999854
No 391
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.36 E-value=0.001 Score=60.38 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 015875 350 DIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 350 di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~ 385 (399)
+++.+-......|...+-..|+..++.++++..+..
T Consensus 159 ~ir~i~~~l~~~a~~~~i~~i~~~~~~~~~~~~~~~ 194 (197)
T PRK12339 159 EYRTIMDYSIADARGYNIKVIDTDNYREARNPLLDP 194 (197)
T ss_pred HHHHHHHHHHHHHHHcCCCeecCccHHHHHHHHHHH
Confidence 566666666677777788899999999999988654
No 392
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.36 E-value=0.0005 Score=73.82 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=25.0
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+++...+-|.|++|||||||+|.+....
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45666779999999999999999999853
No 393
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.36 E-value=0.00055 Score=70.63 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=61.4
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC---CceEEEe-ccch
Q 015875 136 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVI-GSEL 211 (399)
Q Consensus 136 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~---~~~i~v~-~s~l 211 (399)
...++++++-.+++.+.+++.+.. +..-++++||+|+||||+++++.+++. ..++.+. ..|+
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~--------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRR--------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 456788888888888888887753 223489999999999999998887664 2344432 1111
Q ss_pred h-----hhhhchh-HHHHHHHHHHHHcCCCEEEEEecCCc
Q 015875 212 V-----QKYVGEG-ARMVRELFQMARSKKACIVFFDEVDA 245 (399)
Q Consensus 212 ~-----~~~~g~~-~~~v~~~f~~a~~~~p~il~iDEiD~ 245 (399)
. +..+... ..........+....|++|++.|+-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1 1111110 01233445555668999999999853
No 394
>PRK06217 hypothetical protein; Validated
Probab=97.36 E-value=0.00018 Score=64.43 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=27.8
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
.|+|.|+||+||||+++.+++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876554
No 395
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.34 E-value=0.0021 Score=66.44 Aligned_cols=110 Identities=25% Similarity=0.247 Sum_probs=65.4
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh----cCCceEEEeccchhhhh--------------h----------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR----TDACFIRVIGSELVQKY--------------V---------------- 216 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~----~~~~~i~v~~s~l~~~~--------------~---------------- 216 (399)
|+++++.+|+.||||||||++|..++.+ .+.+.+.+...+-.... .
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~~ 96 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPEG 96 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhcc
Confidence 7888999999999999999999988542 25676666543321110 0
Q ss_pred ------chhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 217 ------GEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 217 ------g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
-.....+..+........+..++||=+..+.... .......+.+..++..+.. .++.+|.+++.
T Consensus 97 ~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~-----~~~~~~r~~l~~Li~~L~~----~g~TvLLtsh~ 166 (484)
T TIGR02655 97 QDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQY-----DAVSVVRREIFRLVARLKQ----IGVTTVMTTER 166 (484)
T ss_pred ccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhc-----CchHHHHHHHHHHHHHHHH----CCCEEEEEecC
Confidence 0112234445555666777899999766653211 0012334555666666542 24456666654
No 396
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.0062 Score=61.25 Aligned_cols=138 Identities=17% Similarity=0.193 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCCC-ChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEeccchhh-------h
Q 015875 147 KEQIEKMREVVELPML-HPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQ-------K 214 (399)
Q Consensus 147 ~~~~~~l~~~i~~~~~-~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~s~l~~-------~ 214 (399)
+.....+.+.+...+. .+..+...+...+..++|.||+|+||||++..+|... +..+..+++..... .
T Consensus 194 ~~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~ 273 (432)
T PRK12724 194 HNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKR 273 (432)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHH
Confidence 3444555555543221 1122222222345568999999999999999999743 33444444433211 1
Q ss_pred h---hch---hHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 215 Y---VGE---GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 215 ~---~g~---~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
| .|- .......+...+......+|+||=...... +......|..++.......+...+.|+-+|.
T Consensus 274 yAe~lgvp~~~~~~~~~l~~~l~~~~~D~VLIDTaGr~~r---------d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 274 YADTMGMPFYPVKDIKKFKETLARDGSELILIDTAGYSHR---------NLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HHHhcCCCeeehHHHHHHHHHHHhCCCCEEEEeCCCCCcc---------CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 1 010 111123344444445567899986433311 3334444444444332111223455555555
Q ss_pred CCCCC
Q 015875 289 RPDTL 293 (399)
Q Consensus 289 ~~~~l 293 (399)
..+.+
T Consensus 345 ~~~~~ 349 (432)
T PRK12724 345 SYHHT 349 (432)
T ss_pred CHHHH
Confidence 44333
No 397
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.34 E-value=0.00082 Score=65.22 Aligned_cols=139 Identities=25% Similarity=0.334 Sum_probs=80.2
Q ss_pred cCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHH
Q 015875 144 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMV 223 (399)
Q Consensus 144 ~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v 223 (399)
.|..+.++-+.+++-..+.. ..+..+.++|+|+.|+|||++++.+..-+|.....+..+-..... +..
T Consensus 52 ~~d~~~~~~l~~~lg~~L~~-------~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~-~~~---- 119 (304)
T TIGR01613 52 GGDNELIEYLQRVIGYSLTG-------NYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEF-QEH---- 119 (304)
T ss_pred CCCHHHHHHHHHHHhHHhcC-------CCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhc-cCC----
Confidence 34555677777777664443 234566899999999999999999998887655433333222221 110
Q ss_pred HHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcC----------CCCCCCeEEEEecCCCCCC
Q 015875 224 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG----------FDARGNIKVLMATNRPDTL 293 (399)
Q Consensus 224 ~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~----------~~~~~~v~vI~atn~~~~l 293 (399)
-|..+......+++.||++.-. + .+ ...+..+.. -+. +.-.....+|++||..-.+
T Consensus 120 --~f~~a~l~gk~l~~~~E~~~~~--~------~~---~~~lK~lt~-gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~ 185 (304)
T TIGR01613 120 --RFGLARLEGKRAVIGDEVQKGY--R------DD---ESTFKSLTG-GDTITARFKNKDPFEFTPKFTLVQSTNHLPRI 185 (304)
T ss_pred --CchhhhhcCCEEEEecCCCCCc--c------cc---HHhhhhhhc-CCeEEeecccCCcEEEEEeeEEEEEcCCCCcc
Confidence 1333344445599999986420 0 01 123333321 111 1112246688899885333
Q ss_pred ---CccccCCCCceeEEEecC
Q 015875 294 ---DPALLRPGRLDRKVEFGL 311 (399)
Q Consensus 294 ---d~al~r~gRf~~~i~~~~ 311 (399)
+.++.| |+ .+|.|+.
T Consensus 186 ~~~~~a~~R--R~-~vi~f~~ 203 (304)
T TIGR01613 186 RGFDGGIKR--RL-RIIPFTK 203 (304)
T ss_pred CCCChhhee--eE-EEEeccC
Confidence 567888 77 5676653
No 398
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.33 E-value=0.0018 Score=58.58 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=62.5
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc--CC--ceEEEeccchh------------h---hhhc--------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT--DA--CFIRVIGSELV------------Q---KYVG-------------- 217 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~--~~--~~i~v~~s~l~------------~---~~~g-------------- 217 (399)
.+.+...+.|.||+|+|||+|.+.++... .. --+.+++..+. + .+.+
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~ 110 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR 110 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc
Confidence 34667789999999999999999999865 21 11112111100 0 0000
Q ss_pred -hh-HHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 218 -EG-ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 218 -~~-~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
-+ ...-+-.+..+-...|.++++||-..- -+......+.+++.++.. . +..+|++|+.+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~----------LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~ 171 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSG----------LDSSSALQVMSLLRRLAD---T-GRTIICSIHQP 171 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcC----------CCHHHHHHHHHHHHHHHh---C-CCEEEEEecCc
Confidence 00 011122333344567889999997654 267777888888877632 2 34566676654
No 399
>PLN02200 adenylate kinase family protein
Probab=97.32 E-value=0.00045 Score=64.51 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=33.2
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhh
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 215 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~ 215 (399)
+.|..+++.||||+|||++|+.+|++++.+ .+++++++...
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~~ 81 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRRE 81 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHHH
Confidence 445679999999999999999999998764 57777776543
No 400
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.32 E-value=0.0011 Score=66.03 Aligned_cols=103 Identities=17% Similarity=0.326 Sum_probs=59.6
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCC---ceEEEeccchhhhhh-chhHHHHHHHHH-------------------H
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDA---CFIRVIGSELVQKYV-GEGARMVRELFQ-------------------M 229 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~---~~i~v~~s~l~~~~~-g~~~~~v~~~f~-------------------~ 229 (399)
..+..+++.||.|||||++.+++.+.+.. .++.+....+....+ |.. .+...|. .
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~--T~hs~f~i~~~~~~~~~~~~~~~~~~~ 97 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGR--TIHSFFGIPINNNEKSQCKISKNSRLR 97 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCc--chHHhcCccccccccccccccccchhh
Confidence 45678999999999999999999987633 344443333333222 110 0111111 0
Q ss_pred HHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC----CCCCCeEEEEecC
Q 015875 230 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF----DARGNIKVLMATN 288 (399)
Q Consensus 230 a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~----~~~~~v~vI~atn 288 (399)
.....-.+|+||||-.+ +......+.+.|..+.+- .+-+++.||+...
T Consensus 98 ~~l~~~~~lIiDEism~-----------~~~~l~~i~~~lr~i~~~~~~~~pFGG~~vil~GD 149 (364)
T PF05970_consen 98 ERLRKADVLIIDEISMV-----------SADMLDAIDRRLRDIRKSKDSDKPFGGKQVILFGD 149 (364)
T ss_pred hhhhhheeeecccccch-----------hHHHHHHHHHhhhhhhcccchhhhcCcceEEeehh
Confidence 11123359999999887 455566666666655442 2335666666553
No 401
>PRK14531 adenylate kinase; Provisional
Probab=97.31 E-value=0.00022 Score=63.88 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=28.4
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
.+++.||||+||||+++.+|..++.+++. +.+++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 59999999999999999999999877654 44444
No 402
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.31 E-value=0.0014 Score=57.48 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=55.2
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---------------CCceEEEeccc-hhhhhhchhHHHHHHHHHHHH---cCC
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---------------DACFIRVIGSE-LVQKYVGEGARMVRELFQMAR---SKK 234 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---------------~~~~i~v~~s~-l~~~~~g~~~~~v~~~f~~a~---~~~ 234 (399)
.++..++.||.|+|||++.++++--+ +...-.+...- +...-...+.+....+-.... ...
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~ 99 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKP 99 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCC
Confidence 34589999999999999999986422 22111111000 000001112222222222211 137
Q ss_pred CEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 015875 235 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 292 (399)
Q Consensus 235 p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ 292 (399)
|+++++||+..-. +......+.+.+.+... . +..+|++|..++.
T Consensus 100 ~~llllDEp~~gl----------d~~~~~~l~~~l~~~~~---~-~~~vii~TH~~~~ 143 (162)
T cd03227 100 RPLYILDEIDRGL----------DPRDGQALAEAILEHLV---K-GAQVIVITHLPEL 143 (162)
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHHHHHHHHh---c-CCEEEEEcCCHHH
Confidence 7899999987653 44444555555544321 2 3467888887653
No 403
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.31 E-value=0.00021 Score=61.53 Aligned_cols=27 Identities=37% Similarity=0.671 Sum_probs=24.3
Q ss_pred eeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 178 VLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~~~~~i 204 (399)
++|.|+||+||||+|+.++..++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 689999999999999999999877654
No 404
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.31 E-value=0.00057 Score=64.90 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=49.7
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCC----ceEEE---------ec-cchhhhhhchhHHHHHHHHHHHHcCCCEEEEE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDA----CFIRV---------IG-SELVQKYVGEGARMVRELFQMARSKKACIVFF 240 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~----~~i~v---------~~-s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~i 240 (399)
..-||++||+|+||||...++-++.+. ..+.+ +- +-+.+.-+|.-.......++.|-..+|+||++
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlv 204 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILV 204 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEE
Confidence 334899999999999999988887643 23333 11 22233456666666667777778889999999
Q ss_pred ecCCc
Q 015875 241 DEVDA 245 (399)
Q Consensus 241 DEiD~ 245 (399)
-|+-.
T Consensus 205 GEmRD 209 (353)
T COG2805 205 GEMRD 209 (353)
T ss_pred ecccc
Confidence 99754
No 405
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.0023 Score=57.71 Aligned_cols=106 Identities=22% Similarity=0.272 Sum_probs=61.8
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEeccchh-----------h---hhhc-hh-------------
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELV-----------Q---KYVG-EG------------- 219 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~s~l~-----------~---~~~g-~~------------- 219 (399)
+.+...+.|.||+|+|||+|++.++... ..--+.++...+. + .+.+ ..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~L 109 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGL 109 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcC
Confidence 4566789999999999999999999632 1111222211110 0 0000 00
Q ss_pred --HHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 220 --ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 220 --~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
...-+-.+..+-...|.++++||-..- -+......+.+++.++.. . +..+|++|+.++
T Consensus 110 SgGe~qrv~la~al~~~p~vlllDEP~~~----------LD~~~~~~l~~~l~~~~~---~-~~tiiivtH~~~ 169 (192)
T cd03232 110 SVEQRKRLTIGVELAAKPSILFLDEPTSG----------LDSQAAYNIVRFLKKLAD---S-GQAILCTIHQPS 169 (192)
T ss_pred CHHHhHHHHHHHHHhcCCcEEEEeCCCcC----------CCHHHHHHHHHHHHHHHH---c-CCEEEEEEcCCh
Confidence 011112233444567889999997654 267777888888877642 2 345777777653
No 406
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.30 E-value=0.0015 Score=61.49 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=24.7
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+++..-+-|.||.|||||||.|++++-+
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34566779999999999999999999854
No 407
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00027 Score=63.13 Aligned_cols=27 Identities=37% Similarity=0.677 Sum_probs=23.5
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCce
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACF 203 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~ 203 (399)
.++|.||||+||||+|+.|++.++.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 489999999999999999999955543
No 408
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.30 E-value=0.00095 Score=65.70 Aligned_cols=117 Identities=16% Similarity=0.211 Sum_probs=68.5
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---------CCceEEEeccch------hh---hhhch--------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSEL------VQ---KYVGE-------------- 218 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---------~~~~i~v~~s~l------~~---~~~g~-------------- 218 (399)
|+.+..-+.++|+||+|||.++..+|-.. +...++++..+- .+ .+--.
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 67777889999999999999999887421 235677766541 11 00000
Q ss_pred -hH---HHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 219 -GA---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 219 -~~---~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
.. ..+..+........+.+|+||=|-.+......+ .+.....+..|.+++..+..+....++.||++..
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~-~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSG-RGELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 01 112222222345678899999999886532211 1112233445667777666555556777776644
No 409
>PRK10436 hypothetical protein; Provisional
Probab=97.30 E-value=0.00057 Score=69.90 Aligned_cols=95 Identities=16% Similarity=0.287 Sum_probs=62.0
Q ss_pred CCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC---ceEEEe-ccch-
Q 015875 137 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---CFIRVI-GSEL- 211 (399)
Q Consensus 137 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~---~~i~v~-~s~l- 211 (399)
..++++++-.+...+.+++.+.. +...+|+.||+|+||||+..++.++++. .++.+- .-|+
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~--------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~ 259 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ--------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP 259 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh--------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc
Confidence 45788898888888888887753 3445999999999999999887776532 233331 1111
Q ss_pred ----hhhhhch-hHHHHHHHHHHHHcCCCEEEEEecCCc
Q 015875 212 ----VQKYVGE-GARMVRELFQMARSKKACIVFFDEVDA 245 (399)
Q Consensus 212 ----~~~~~g~-~~~~v~~~f~~a~~~~p~il~iDEiD~ 245 (399)
.+..++. ........++.+....|++|++.||-.
T Consensus 260 l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 260 LAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred CCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 1111111 112244555666678999999999853
No 410
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.00022 Score=61.70 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=25.7
Q ss_pred eeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 178 VLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
+-+.|||||||||+|+.+|+++|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999763
No 411
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.28 E-value=0.00023 Score=62.21 Aligned_cols=32 Identities=41% Similarity=0.640 Sum_probs=26.2
Q ss_pred eeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 178 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
++|.||+|+|||++|+.+++.++..++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 578999999999999999999986654 44444
No 412
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00089 Score=60.33 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.4
Q ss_pred eeEeCCCCCcHHHHHHHHHHhcC
Q 015875 178 VLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~~ 200 (399)
++|+|+||+|||++|+.+|+.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999773
No 413
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.27 E-value=0.00025 Score=60.48 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=27.4
Q ss_pred eeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 178 VLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
+.|.|+||||||++|+.++..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987665
No 414
>PRK06547 hypothetical protein; Provisional
Probab=97.27 E-value=0.00025 Score=62.95 Aligned_cols=35 Identities=37% Similarity=0.378 Sum_probs=29.7
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
..+..|++.|++|+|||++|+.+++.++.+++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 45667999999999999999999999887776543
No 415
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.27 E-value=0.003 Score=58.25 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.1
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
.+.+...+.|.||+|||||||...++.-
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4566678999999999999999999863
No 416
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.27 E-value=0.00047 Score=68.57 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=45.6
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcC-----CceEEEec-cchh-----------hhhhchhHHHHHHHHHHHHcCCCEEE
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTD-----ACFIRVIG-SELV-----------QKYVGEGARMVRELFQMARSKKACIV 238 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~-----~~~i~v~~-s~l~-----------~~~~g~~~~~v~~~f~~a~~~~p~il 238 (399)
..+|+.||+|+||||+++++.+... ...+.+.- .|+. +..+|.........+..+....|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 3689999999999999999988652 33444421 1221 11122222234456666777899999
Q ss_pred EEecCCc
Q 015875 239 FFDEVDA 245 (399)
Q Consensus 239 ~iDEiD~ 245 (399)
++.|+-.
T Consensus 230 ~vGEiRd 236 (372)
T TIGR02525 230 GVGEIRD 236 (372)
T ss_pred eeCCCCC
Confidence 9999853
No 417
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.27 E-value=0.00024 Score=63.78 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=28.5
Q ss_pred eeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh
Q 015875 178 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 214 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~ 214 (399)
|+|.||||+|||++|+.+|..++..+ ++..+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~--i~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECcHHHHH
Confidence 79999999999999999999987665 455555543
No 418
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.0025 Score=56.64 Aligned_cols=107 Identities=23% Similarity=0.333 Sum_probs=63.5
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcCC--ceEEEeccchh--------------------hhhhc----------h-
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELV--------------------QKYVG----------E- 218 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~~--~~i~v~~s~l~--------------------~~~~g----------~- 218 (399)
+.+...+.|.||+|+|||+|+++++..... --+.+++..+. ..+.+ -
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 456677999999999999999999975321 11222211100 00000 0
Q ss_pred hHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 219 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 219 ~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
+...-+-.+..+-...|.++++||-..- -|...+..+.+++.++.. ..+..+|++|+.++
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~----------LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~ 162 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSA----------LDPITRREVRALLKSLQA---QLGITVVLVTHDLD 162 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 0112223344555578889999997553 367778888888887642 21345677776654
No 419
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.25 E-value=0.0023 Score=66.19 Aligned_cols=77 Identities=21% Similarity=0.200 Sum_probs=55.1
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhh------c----------------------hh
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV------G----------------------EG 219 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~------g----------------------~~ 219 (399)
|+.+...+|+.||||+|||+|+-.++... +.+.+++...+-..... | ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 78888899999999999999999998754 55666666544322110 0 01
Q ss_pred HHHHHHHHHHHHcCCCEEEEEecCCccc
Q 015875 220 ARMVRELFQMARSKKACIVFFDEVDAIG 247 (399)
Q Consensus 220 ~~~v~~~f~~a~~~~p~il~iDEiD~l~ 247 (399)
...+..+.+.+....|.+|+||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 3445566666777788899999998774
No 420
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.25 E-value=0.00044 Score=67.91 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=48.3
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCC--ceEEE-eccchhh-----------hh--hchhHHHHHHHHHHHHcCCCE
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRV-IGSELVQ-----------KY--VGEGARMVRELFQMARSKKAC 236 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~--~~i~v-~~s~l~~-----------~~--~g~~~~~v~~~f~~a~~~~p~ 236 (399)
...+++++.|++|+||||+++++...... .++.+ +..|+.- .. .|...-...+++..+....|.
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 34678999999999999999999987642 23222 1122211 00 111122346677788889999
Q ss_pred EEEEecCCc
Q 015875 237 IVFFDEVDA 245 (399)
Q Consensus 237 il~iDEiD~ 245 (399)
.|++.|+-.
T Consensus 238 ~IivGEiR~ 246 (332)
T PRK13900 238 RIIVGELRG 246 (332)
T ss_pred eEEEEecCC
Confidence 999999853
No 421
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.24 E-value=0.00047 Score=61.92 Aligned_cols=72 Identities=25% Similarity=0.340 Sum_probs=45.6
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcC--CceEEEec-cchhhh---h----------hchhHHHHHHHHHHHHcCCCE
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIG-SELVQK---Y----------VGEGARMVRELFQMARSKKAC 236 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~--~~~i~v~~-s~l~~~---~----------~g~~~~~v~~~f~~a~~~~p~ 236 (399)
.....++|.||+|+|||+++++++.... ...+.+.. .++... . .+.....+.+++..+....|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 4466899999999999999999998653 22222211 111100 0 011122345666667778899
Q ss_pred EEEEecCC
Q 015875 237 IVFFDEVD 244 (399)
Q Consensus 237 il~iDEiD 244 (399)
+++++|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999984
No 422
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.24 E-value=0.0018 Score=60.87 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=27.5
Q ss_pred eeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccch
Q 015875 178 VLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 211 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l 211 (399)
|+|.|+||+|||++|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999877 456666665444
No 423
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00037 Score=64.95 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=25.0
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.+...++|.||+|+||||+++.++.-+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcC
Confidence 45667789999999999999999999754
No 424
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.23 E-value=0.0005 Score=62.40 Aligned_cols=138 Identities=24% Similarity=0.276 Sum_probs=63.6
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhh-hchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCC
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY-VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGV 255 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~-~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~ 255 (399)
-++|+||+|||||.+|-++|+.++.+++..+.-...... +|.+.....+ ...-.=++|||-..--
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~e------l~~~~RiyL~~r~l~~-------- 68 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSE------LKGTRRIYLDDRPLSD-------- 68 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGG------GTT-EEEES----GGG--------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHH------HcccceeeeccccccC--------
Confidence 378999999999999999999999999999865544332 3322211111 1111247777643321
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC-CCCC--CccccCCCCce-eEEEecCCCHHHHHHHHHHHHhccCCC
Q 015875 256 GGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-PDTL--DPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRTMNCE 331 (399)
Q Consensus 256 ~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~-~~~l--d~al~r~gRf~-~~i~~~~P~~~er~~Il~~~~~~~~~~ 331 (399)
|.-........++..+......+.+++=+.+.. ...+ ++-.-. .|. .+..++.|+.+....-.+...++|-..
T Consensus 69 -G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~--~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p 145 (233)
T PF01745_consen 69 -GIINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSL--DFRWHIRRLRLPDEEVFMARAKRRVRQMLRP 145 (233)
T ss_dssp --S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSS--SSEEEEEE-----HHHHHHHHHHHHHHHHS-
T ss_pred -CCcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccC--CCeEEEEEEECCChHHHHHHHHHHHHHhcCC
Confidence 123334455566666666655443333333211 0000 011111 232 356778899888777666666666443
No 425
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.23 E-value=0.0042 Score=57.50 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.0
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHH
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~ 197 (399)
..+.++|+||.|+|||++.+.++-
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 455689999999999999999875
No 426
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.23 E-value=0.0068 Score=57.88 Aligned_cols=74 Identities=22% Similarity=0.395 Sum_probs=45.1
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh-------hh---hc----------hhHHHHHHHHHH
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-------KY---VG----------EGARMVRELFQM 229 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~-------~~---~g----------~~~~~v~~~f~~ 229 (399)
.+++.+.|.||+|+|||+++..+|..+ +..+.-+++..+.. .| .| .....+...+..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998765 44454455432110 01 00 112223334444
Q ss_pred HHcCCCEEEEEecCCcc
Q 015875 230 ARSKKACIVFFDEVDAI 246 (399)
Q Consensus 230 a~~~~p~il~iDEiD~l 246 (399)
+......+++||=...+
T Consensus 150 ~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHCCCCEEEEeCCCCC
Confidence 55556679999877665
No 427
>PRK14530 adenylate kinase; Provisional
Probab=97.23 E-value=0.00031 Score=64.58 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=26.6
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
.++|.||||+||||+++.||+.++.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999998776643
No 428
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.22 E-value=0.0023 Score=58.04 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=63.5
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEeccchhh-------------------------------hh
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQ-------------------------------KY 215 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~s~l~~-------------------------------~~ 215 (399)
.+.++..+.|.||+|+|||+|++.++... ..--+.+++..+.. ..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~ 101 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV 101 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc
Confidence 34677789999999999999999999862 11112332211100 00
Q ss_pred hch-h-HHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 216 VGE-G-ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 216 ~g~-~-~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
... + ....+-.+..+-...|.++++||--.- -+......+.+++.++.. . +..+|++|+.++
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~----------LD~~~~~~l~~~L~~~~~---~-~~tiii~sh~~~ 165 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSG----------LDIDALRLVAEVINKLRE---E-GKSVLIITHYQR 165 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEecCHH
Confidence 000 0 111122333444567889999996543 267777888888877631 2 345677777654
No 429
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0015 Score=59.30 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=22.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~ 197 (399)
.++..+-.-|.||+||||||+.|++-+
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHh
Confidence 345666788999999999999999975
No 430
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.22 E-value=0.0012 Score=57.17 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=28.5
Q ss_pred eeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchh
Q 015875 178 VLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 212 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~ 212 (399)
++|.|+||+|||++|+.++..+ +...+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 7899999999999999999987 5566667655443
No 431
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.21 E-value=0.0014 Score=57.78 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=19.2
Q ss_pred CceeEeCCCCCcHHH-HHHHHHHhc
Q 015875 176 KGVLCYGPPGTGKTL-LARAVANRT 199 (399)
Q Consensus 176 ~~vLL~GppGtGKT~-larala~~~ 199 (399)
+.+++.||+|+|||+ ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 589999999999999 555555544
No 432
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.21 E-value=0.00035 Score=64.99 Aligned_cols=37 Identities=22% Similarity=0.495 Sum_probs=29.9
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 213 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~ 213 (399)
|..++|.||||+||||+|+.+|+.++.+++ +..+++.
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~i--s~gdllr 42 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHI--NMGNILR 42 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEE--ECChHHH
Confidence 445999999999999999999999987655 4445544
No 433
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.0037 Score=62.26 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchh----h---hh-
Q 015875 147 KEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV----Q---KY- 215 (399)
Q Consensus 147 ~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~----~---~~- 215 (399)
...++.+.+.+...+..+..+ ...++.++|.||+|+||||++..+|..+ +..+..+++.... . .+
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 455555555554333322111 1235779999999999999999999865 3344444442221 0 11
Q ss_pred --------hchhHHHHHHHHHHHHc-CCCEEEEEecCCcc
Q 015875 216 --------VGEGARMVRELFQMARS-KKACIVFFDEVDAI 246 (399)
Q Consensus 216 --------~g~~~~~v~~~f~~a~~-~~p~il~iDEiD~l 246 (399)
....+..+...+..+.. ....+||||-....
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 01233444455555543 24569999987664
No 434
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.20 E-value=0.0035 Score=57.14 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=24.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.+...+.|.||+|+|||||++.++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567789999999999999999999853
No 435
>PTZ00202 tuzin; Provisional
Probab=97.20 E-value=0.019 Score=57.98 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=47.5
Q ss_pred cccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEecc
Q 015875 140 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 209 (399)
Q Consensus 140 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s 209 (399)
..+.+|.+....+|..++... ....+.-+.|.||+|||||++++.+...++.+.+.++..
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~----------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRL----------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhcc----------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 346899999999999988631 223455789999999999999999999888766666554
No 436
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.19 E-value=0.0067 Score=59.21 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=44.7
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchh-------hhh------------hc-hhHHHHHHHHHH
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV-------QKY------------VG-EGARMVRELFQM 229 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~-------~~~------------~g-~~~~~v~~~f~~ 229 (399)
.++..++|.||+|+||||++..+|..+ +..+..+.+..+. ..+ .+ .....+.+.+..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 346779999999999999999999865 3444444432211 000 00 111222333444
Q ss_pred HHcCCCEEEEEecCCcc
Q 015875 230 ARSKKACIVFFDEVDAI 246 (399)
Q Consensus 230 a~~~~p~il~iDEiD~l 246 (399)
+......+|+||=...+
T Consensus 192 ~~~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 192 AKARGIDVLIIDTAGRL 208 (318)
T ss_pred HHhCCCCEEEEeCCCCC
Confidence 45566679999987665
No 437
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.19 E-value=0.0021 Score=63.55 Aligned_cols=113 Identities=14% Similarity=0.254 Sum_probs=61.7
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCC-----ceEEEec-------cchhhhh---hc-----hhH-HHH---HHHHHH-
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDA-----CFIRVIG-------SELVQKY---VG-----EGA-RMV---RELFQM- 229 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~-----~~i~v~~-------s~l~~~~---~g-----~~~-~~v---~~~f~~- 229 (399)
....+|+||||||||++++.+++.+.. .++.+-. .++.... +. +.. ..+ ..+...
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~A 212 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERA 212 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHH
Confidence 345899999999999999999986632 2222211 1111111 00 111 111 111111
Q ss_pred ---HHcCCCEEEEEecCCcccCCccC--------CCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 015875 230 ---ARSKKACIVFFDEVDAIGGARFD--------DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 287 (399)
Q Consensus 230 ---a~~~~p~il~iDEiD~l~~~r~~--------~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 287 (399)
.......+|++||+.+++....+ .+.|-+..+...+-+|+..-......+.+.+|+|.
T Consensus 213 e~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s~G~~~s~~~~~~rl~~~A~~~~~~GSiT~i~Tv 281 (380)
T PRK12608 213 KRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDARALQRPKRLFGAARNIEEGGSLTIIATA 281 (380)
T ss_pred HHHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCCCCcChHHHhhhHHHHHhcCCCCCCcchhheEEE
Confidence 22355679999999987532211 11244667777777888765544445555555544
No 438
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.19 E-value=0.00052 Score=66.73 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=48.5
Q ss_pred hhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC--ceEEEe-ccchhhh-------h-----hchhHHHHHHHHHHHHcC
Q 015875 169 KLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVI-GSELVQK-------Y-----VGEGARMVRELFQMARSK 233 (399)
Q Consensus 169 ~~g~~~~~~vLL~GppGtGKT~larala~~~~~--~~i~v~-~s~l~~~-------~-----~g~~~~~v~~~f~~a~~~ 233 (399)
.+-+....++++.||+|+|||+++++++..... ..+.+. ..++.-. . .+...-...+++..+...
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRM 217 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcC
Confidence 334566789999999999999999999986532 222221 1111100 0 011122345667777778
Q ss_pred CCEEEEEecCC
Q 015875 234 KACIVFFDEVD 244 (399)
Q Consensus 234 ~p~il~iDEiD 244 (399)
.|.+|++||+-
T Consensus 218 ~pd~ii~gE~r 228 (308)
T TIGR02788 218 RPDRIILGELR 228 (308)
T ss_pred CCCeEEEeccC
Confidence 99999999985
No 439
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.19 E-value=0.0015 Score=62.17 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=43.5
Q ss_pred eeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh-h--h-hchhHHHHH----HHHHHHHcCCCEEEEEecCCcc
Q 015875 178 VLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-K--Y-VGEGARMVR----ELFQMARSKKACIVFFDEVDAI 246 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~-~--~-~g~~~~~v~----~~f~~a~~~~p~il~iDEiD~l 246 (399)
|+|+|.||+|||++|+.|+..+ +..++.++-..+.- . | ....++..| ..+..+.... .||++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~-~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKD-TIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccC-eEEEEeCCchH
Confidence 7999999999999999999864 55666666444431 1 1 122334333 3333333333 59999998887
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHH
Q 015875 247 GGARFDDGVGGDNEVQRTMLEIVNQ 271 (399)
Q Consensus 247 ~~~r~~~~~~~~~~~~~~l~~ll~~ 271 (399)
..+...+..+-..
T Consensus 83 ------------Kg~RYelyclAr~ 95 (270)
T PF08433_consen 83 ------------KGMRYELYCLARA 95 (270)
T ss_dssp ------------HHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHH
Confidence 4555666665554
No 440
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.19 E-value=0.00042 Score=61.48 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=29.8
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEec
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 208 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~ 208 (399)
+..++|.|++|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999988876653
No 441
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.18 E-value=0.006 Score=55.03 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=25.0
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
-+.++..+.|.||+|+|||+|++.++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567789999999999999999999853
No 442
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.18 E-value=0.0028 Score=56.57 Aligned_cols=107 Identities=17% Similarity=0.160 Sum_probs=62.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcCC--ceEEEeccchh----------------hh------hh-chhHH----
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELV----------------QK------YV-GEGAR---- 221 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~~--~~i~v~~s~l~----------------~~------~~-g~~~~---- 221 (399)
.+.+...+.|.||+|+|||+|++.++..... --+.+++..+. +. +. .....
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~ 101 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL 101 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHH
Confidence 3466778999999999999999999985421 11112211100 00 00 00000
Q ss_pred --------HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 222 --------MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 222 --------~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
..+-.+..+-...|.++++||--.- -+......+.+++..+.. . +..+|++|+..+
T Consensus 102 ~~~LS~G~~qrl~la~al~~~p~llllDEP~~~----------LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~ 165 (182)
T cd03215 102 SSLLSGGNQQKVVLARWLARDPRVLILDEPTRG----------VDVGAKAEIYRLIRELAD---A-GKAVLLISSELD 165 (182)
T ss_pred HhhcCHHHHHHHHHHHHHccCCCEEEECCCCcC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHH
Confidence 1112233444578889999997553 367778888888877642 2 345777777653
No 443
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.18 E-value=0.00082 Score=70.72 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=62.1
Q ss_pred CCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC---ceEEEec-----
Q 015875 137 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---CFIRVIG----- 208 (399)
Q Consensus 137 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~---~~i~v~~----- 208 (399)
..++++++-..+..+.+.+++.. +...+|++||+|+||||+..++.+.++. .++.+--
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~--------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~ 357 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK--------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN 357 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh--------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec
Confidence 45778888888888888887753 2345899999999999999888887642 2333211
Q ss_pred -cchhhhhhch-hHHHHHHHHHHHHcCCCEEEEEecCCc
Q 015875 209 -SELVQKYVGE-GARMVRELFQMARSKKACIVFFDEVDA 245 (399)
Q Consensus 209 -s~l~~~~~g~-~~~~v~~~f~~a~~~~p~il~iDEiD~ 245 (399)
..+.+..+.. ........++.+....|.+|++.||-.
T Consensus 358 ~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 358 LPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 1111111111 111244556666778999999999854
No 444
>PRK13946 shikimate kinase; Provisional
Probab=97.17 E-value=0.00035 Score=62.66 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=29.9
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
++.|+|.|++|||||++++.+|+.++.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 467999999999999999999999999987655
No 445
>PLN02674 adenylate kinase
Probab=97.17 E-value=0.00072 Score=63.33 Aligned_cols=39 Identities=23% Similarity=0.570 Sum_probs=30.7
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 213 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~ 213 (399)
+++..++|.||||+||+|+++.+|+.++.++ ++..+++.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR 67 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLR 67 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHH
Confidence 3446799999999999999999999998654 45555544
No 446
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0021 Score=63.82 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.4
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
..+..++|.||+|+||||++..+|..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 446689999999999999999999753
No 447
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.17 E-value=0.0042 Score=56.50 Aligned_cols=29 Identities=34% Similarity=0.436 Sum_probs=24.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.++..+.|.||+|+|||||++.++...
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34667789999999999999999999853
No 448
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.17 E-value=0.0042 Score=55.45 Aligned_cols=101 Identities=17% Similarity=0.262 Sum_probs=56.7
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCce------------------------EEEeccc----hhh----hhhchhHHHHH
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACF------------------------IRVIGSE----LVQ----KYVGEGARMVR 224 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~------------------------i~v~~s~----l~~----~~~g~~~~~v~ 224 (399)
-.+|+||.|+|||.+..|++-.++..- +.+.... +.+ .....+++..-
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge~~r~ 103 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEKSLS 103 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHHHHHH
Confidence 688999999999999999976442211 1111100 000 01111222221
Q ss_pred HHHHHHH---cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 225 ELFQMAR---SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 225 ~~f~~a~---~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
.+..... ...|.++++||.+.-+ +......+.+++.++.. . +..+|++|+.++
T Consensus 104 ~Laral~~~~~~~p~llilDEp~~~L----------D~~~~~~i~~~L~~~~~---~-g~tiIiiSH~~~ 159 (178)
T cd03239 104 ALALIFALQEIKPSPFYVLDEIDAAL----------DPTNRRRVSDMIKEMAK---H-TSQFIVITLKKE 159 (178)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCC----------CHHHHHHHHHHHHHHHh---C-CCEEEEEECCHH
Confidence 2222211 2567899999998763 55666677777776531 2 345777777654
No 449
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.16 E-value=0.00042 Score=61.08 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=27.9
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
.++|.|++|+|||++++.+|+.++.+|+..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5899999999999999999999999887543
No 450
>PRK06696 uridine kinase; Validated
Probab=97.16 E-value=0.00097 Score=61.68 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=32.5
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchh
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 212 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~ 212 (399)
..+.-|.+.|+||+||||+|+.|+..+ +.+++.+.+.++.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 346679999999999999999999988 6677776665553
No 451
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.16 E-value=0.00075 Score=61.99 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=28.3
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 213 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~ 213 (399)
.|+++||||+|||++|+.+|..++.+++ +..+++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~i--s~~dl~r 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHI--STGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--ECCccHH
Confidence 3899999999999999999999986655 4444543
No 452
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0022 Score=59.69 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=23.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
.+....-+.|.||+||||||+.|.|-+.
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrL 50 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRL 50 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcc
Confidence 3455566899999999999999999774
No 453
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.0045 Score=57.35 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=39.8
Q ss_pred HHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCcccc
Q 015875 225 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALL 298 (399)
Q Consensus 225 ~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~ 298 (399)
-++..|--..|-++++||--.= -|......+++.+.++-. ..+..-+|..|...+.++|.+-
T Consensus 180 vLiaRALv~~P~LLiLDEP~~G----------LDl~~re~ll~~l~~~~~--~~~~~~ll~VtHh~eEi~~~~t 241 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQG----------LDLIAREQLLNRLEELAA--SPGAPALLFVTHHAEEIPPCFT 241 (257)
T ss_pred HHHHHHHhcCCCEEEecCcccc----------CChHHHHHHHHHHHHHhc--CCCCceEEEEEcchhhcccccc
Confidence 4555566678999999995321 244455566777766542 2334557788888888877554
No 454
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.15 E-value=0.0012 Score=64.36 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=46.0
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc-----CCceEEEe-ccchhhh------hhchhHHHHHHHHHHHHcCCCEEEEEec
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVI-GSELVQK------YVGEGARMVRELFQMARSKKACIVFFDE 242 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~-----~~~~i~v~-~s~l~~~------~~g~~~~~v~~~f~~a~~~~p~il~iDE 242 (399)
..++++.|++|+|||+++++++... +..++.+. ..|+.-. +..........++..+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 5689999999999999999999875 22333332 2232210 0011112345677777789999999999
Q ss_pred CC
Q 015875 243 VD 244 (399)
Q Consensus 243 iD 244 (399)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 84
No 455
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.15 E-value=0.001 Score=65.02 Aligned_cols=62 Identities=23% Similarity=0.368 Sum_probs=45.5
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhhCC-CCCCceeEeCCCCCcHHHHHHHHHHhcC-CceEEEeccc
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGI-DPPKGVLCYGPPGTGKTLLARAVANRTD-ACFIRVIGSE 210 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~-~~~~~vLL~GppGtGKT~larala~~~~-~~~i~v~~s~ 210 (399)
+++-|+++.+.++...+..... |. ...+-++|.||+|+|||++++.+.+.+. .+++.+..+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~--------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~P 124 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQ--------GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCP 124 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHh--------ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCc
Confidence 3699999999999988765222 33 3345689999999999999999998663 3445444433
No 456
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.15 E-value=0.038 Score=55.44 Aligned_cols=151 Identities=19% Similarity=0.292 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHH--HHHHHhcCCceEEEeccchhhh-----------
Q 015875 148 EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLA--RAVANRTDACFIRVIGSELVQK----------- 214 (399)
Q Consensus 148 ~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~la--rala~~~~~~~i~v~~s~l~~~----------- 214 (399)
+.+++|+.++.. .+..-|+++||.|+||+.|+ +++.++- ..+.++|..+...
T Consensus 3 e~~~~L~~wL~e-------------~~~TFIvV~GPrGSGK~elV~d~~L~~r~--~vL~IDC~~i~~ar~D~~~I~~lA 67 (431)
T PF10443_consen 3 EAIEQLKSWLNE-------------NPNTFIVVQGPRGSGKRELVMDHVLKDRK--NVLVIDCDQIVKARGDAAFIKNLA 67 (431)
T ss_pred hHHHHHHHHHhc-------------CCCeEEEEECCCCCCccHHHHHHHHhCCC--CEEEEEChHhhhccChHHHHHHHH
Confidence 456778888764 34456999999999999999 6666543 3778888665431
Q ss_pred -------------------------hhch-------hHHHHHHHHHHH-----------Hc-------------------
Q 015875 215 -------------------------YVGE-------GARMVRELFQMA-----------RS------------------- 232 (399)
Q Consensus 215 -------------------------~~g~-------~~~~v~~~f~~a-----------~~------------------- 232 (399)
..|. .+..++.++... +.
T Consensus 68 ~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe 147 (431)
T PF10443_consen 68 SQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPE 147 (431)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCc
Confidence 0111 122333333321 10
Q ss_pred CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC---CCCCccccCCCCceeEEEe
Q 015875 233 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP---DTLDPALLRPGRLDRKVEF 309 (399)
Q Consensus 233 ~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~~~i~~ 309 (399)
..| ||+||.+..-... +..+...|.++-..+-. ..---||+.|+.. ..|..++= .|.-+.|.+
T Consensus 148 ~~P-VVVIdnF~~k~~~--------~~~iy~~laeWAa~Lv~---~nIAHVIFlT~dv~~~k~LskaLP--n~vf~tI~L 213 (431)
T PF10443_consen 148 RRP-VVVIDNFLHKAEE--------NDFIYDKLAEWAASLVQ---NNIAHVIFLTDDVSYSKPLSKALP--NRVFKTISL 213 (431)
T ss_pred cCC-EEEEcchhccCcc--------cchHHHHHHHHHHHHHh---cCccEEEEECCCCchhhhHHHhCC--CCceeEEee
Confidence 135 9999999664211 34445555555443321 1111245555433 45566663 366689999
Q ss_pred cCCCHHHHHHHHHHHHhc
Q 015875 310 GLPDLESRTQIFKIHTRT 327 (399)
Q Consensus 310 ~~P~~~er~~Il~~~~~~ 327 (399)
.-.+.+.-+.++..++..
T Consensus 214 ~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 214 SDASPESAKQYVLSQLDE 231 (431)
T ss_pred cCCCHHHHHHHHHHHhcc
Confidence 998888888877777754
No 457
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.13 E-value=0.00051 Score=67.01 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=46.0
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc-----CCceEEE-eccchhh---h---hhchhHHHHHHHHHHHHcCCCEEEEEe
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRV-IGSELVQ---K---YVGEGARMVRELFQMARSKKACIVFFD 241 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~-----~~~~i~v-~~s~l~~---~---~~g~~~~~v~~~f~~a~~~~p~il~iD 241 (399)
..+++++.|++|+|||+++++++... ...++.+ +..++.- . +.........+++..+....|+.|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 45689999999999999999999863 1223322 1122210 0 000111235667777888999999999
Q ss_pred cCC
Q 015875 242 EVD 244 (399)
Q Consensus 242 EiD 244 (399)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 985
No 458
>PRK13764 ATPase; Provisional
Probab=97.13 E-value=0.0005 Score=72.17 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=41.5
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCC---ceEEE-eccchh-----hhhhchhHHHHHHHHHHHHcCCCEEEEEecCC
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDA---CFIRV-IGSELV-----QKYVGEGARMVRELFQMARSKKACIVFFDEVD 244 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~---~~i~v-~~s~l~-----~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD 244 (399)
...++|++||||+||||+++++++.+.. .+..+ +..++. ..+.. ...........+....|.+|++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 3568999999999999999999987642 22222 111221 11100 00011222223345679999999985
Q ss_pred c
Q 015875 245 A 245 (399)
Q Consensus 245 ~ 245 (399)
.
T Consensus 335 d 335 (602)
T PRK13764 335 K 335 (602)
T ss_pred C
Confidence 4
No 459
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.12 E-value=0.0043 Score=64.61 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=64.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEeccchhhhh--------------h------------c---
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKY--------------V------------G--- 217 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~s~l~~~~--------------~------------g--- 217 (399)
|+++...+||+|+||+|||+++..++... +.+.+.++..+-.... . .
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 67888899999999999999999876531 5566666553322110 0 0
Q ss_pred -------hhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 218 -------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 218 -------~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
+....+..+...+....+..++||-+..+...- .........+..++..+. ..++.+|++++.
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~-----d~~~~~r~~l~~L~~~Lk----~~g~TvLlt~~~ 176 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGF-----SNEAVVRRELRRLFAWLK----QKGVTAVITGER 176 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhc-----cCHHHHHHHHHHHHHHHH----hCCCEEEEEECC
Confidence 011223334444556678899999998764211 011223455666666554 224455666654
No 460
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.12 E-value=0.0012 Score=69.93 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=25.7
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
-+++...+.|.||+|+|||||++.++...
T Consensus 365 ~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 365 KIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45677889999999999999999999864
No 461
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.12 E-value=0.0044 Score=54.03 Aligned_cols=133 Identities=16% Similarity=0.204 Sum_probs=73.0
Q ss_pred eCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChH
Q 015875 181 YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNE 260 (399)
Q Consensus 181 ~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~ 260 (399)
.+.+||||||++.++++.++. |-.+.-.++.++ ...+.+..+.+.+......++|.|==... ..
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~------------~r 68 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQ------------KR 68 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCch------------HH
Confidence 478999999999999999874 445665666444 45556666666664444558888853333 12
Q ss_pred HHHHHHHHHHHhcC--CCCCCCeEEEEecCCCCCCCc--------cccCCCCceeEEEecCCCHHHHHHHHHHHHhccC
Q 015875 261 VQRTMLEIVNQLDG--FDARGNIKVLMATNRPDTLDP--------ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN 329 (399)
Q Consensus 261 ~~~~l~~ll~~l~~--~~~~~~v~vI~atn~~~~ld~--------al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~ 329 (399)
-...+.+.+..+.. +....++.+|+-.=..+.-.+ .++..|==...|.....+...-..|+..+++++.
T Consensus 69 eR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfe 147 (168)
T PF08303_consen 69 ERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFE 147 (168)
T ss_pred HHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcC
Confidence 22334444444321 223456777766532222111 2222111112455454556666666666665543
No 462
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.12 E-value=0.0012 Score=64.29 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=32.0
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
+.++..++|.|+||||||++++.+|..++.+|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 466778999999999999999999999999998443
No 463
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.12 E-value=0.0026 Score=61.47 Aligned_cols=49 Identities=22% Similarity=0.433 Sum_probs=35.5
Q ss_pred cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 015875 232 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 293 (399)
Q Consensus 232 ~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 293 (399)
.+.|.++|+||--. +-|+.....+.+++..+. ..++..|+++|+.++.+
T Consensus 152 ~~~P~lliLDEPt~----------GLDp~~~~~~~~~l~~l~---~~g~~tvlissH~l~e~ 200 (293)
T COG1131 152 LHDPELLILDEPTS----------GLDPESRREIWELLRELA---KEGGVTILLSTHILEEA 200 (293)
T ss_pred hcCCCEEEECCCCc----------CCCHHHHHHHHHHHHHHH---hCCCcEEEEeCCcHHHH
Confidence 46789999999543 347888888888888765 23446788898876443
No 464
>PRK14528 adenylate kinase; Provisional
Probab=97.11 E-value=0.00044 Score=62.16 Aligned_cols=34 Identities=26% Similarity=0.544 Sum_probs=28.2
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
.+++.||||+|||++++.+++.++.+++. ..+++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~l 36 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS--TGDIL 36 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHH
Confidence 58999999999999999999999877654 44444
No 465
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.11 E-value=0.029 Score=60.28 Aligned_cols=155 Identities=16% Similarity=0.218 Sum_probs=93.9
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEeccc-----hhhhh----------hch-------------hHHH
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSE-----LVQKY----------VGE-------------GARM 222 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~s~-----l~~~~----------~g~-------------~~~~ 222 (399)
.+-++|.-|.|.|||+++-.++..+ +..++.++.++ |.+.. .|+ ....
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l 116 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESL 116 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHH
Confidence 4569999999999999999998633 34455555433 11111 111 1223
Q ss_pred HHHHHHH-HHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCC
Q 015875 223 VRELFQM-ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPG 301 (399)
Q Consensus 223 v~~~f~~-a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~g 301 (399)
+..+|.. +....|..++|||.+.+ .++.....|-.+++.. ..++.+|.+|...-.+.-+=+|
T Consensus 117 ~~~L~~Ela~~~~pl~LVlDDyHli----------~~~~l~~~l~fLl~~~-----P~~l~lvv~SR~rP~l~la~lR-- 179 (894)
T COG2909 117 LSSLLNELASYEGPLYLVLDDYHLI----------SDPALHEALRFLLKHA-----PENLTLVVTSRSRPQLGLARLR-- 179 (894)
T ss_pred HHHHHHHHHhhcCceEEEecccccc----------CcccHHHHHHHHHHhC-----CCCeEEEEEeccCCCCccccee--
Confidence 4455554 34567999999999999 3567778888888763 5678888888543222221111
Q ss_pred CceeEEEecC----CCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcH
Q 015875 302 RLDRKVEFGL----PDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG 348 (399)
Q Consensus 302 Rf~~~i~~~~----P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg 348 (399)
-=+..+++.. -+.+|-.+++..... ..+ +..+...|...++|+..
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~-l~L-d~~~~~~L~~~teGW~~ 228 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGS-LPL-DAADLKALYDRTEGWAA 228 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCC-CCC-ChHHHHHHHhhcccHHH
Confidence 1112334443 466777777766542 111 34457788888888755
No 466
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.10 E-value=0.00062 Score=67.05 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=48.1
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcCC--ceEEEe-ccchhhh------------hhchhHHHHHHHHHHHHcCCC
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVI-GSELVQK------------YVGEGARMVRELFQMARSKKA 235 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~~--~~i~v~-~s~l~~~------------~~g~~~~~v~~~f~~a~~~~p 235 (399)
-+...+++++.||+|+||||++++++..... ..+.+. ..|+.-. ..+...-...+++..+....|
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~p 237 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRP 237 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCC
Confidence 3456778999999999999999999987532 233221 1122100 011112234567777777899
Q ss_pred EEEEEecCC
Q 015875 236 CIVFFDEVD 244 (399)
Q Consensus 236 ~il~iDEiD 244 (399)
..|++.|+-
T Consensus 238 D~IivGEiR 246 (344)
T PRK13851 238 DRILLGEMR 246 (344)
T ss_pred CeEEEEeeC
Confidence 999999974
No 467
>PRK14527 adenylate kinase; Provisional
Probab=97.10 E-value=0.00043 Score=62.34 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=27.4
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~~i 204 (399)
..+.-+++.||||+|||++|+.++++++...+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 34567999999999999999999999876544
No 468
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0036 Score=59.74 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=24.2
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
.++...-+-|.||+|+||||+.|.||.-
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTlLRiIAGL 51 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTLLRIIAGL 51 (345)
T ss_pred eecCCcEEEEECCCCCcHHHHHHHHhCc
Confidence 3456677999999999999999999984
No 469
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.09 E-value=0.0005 Score=61.29 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=27.5
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
-+++.||||+||||+++.+++.++.. .++..++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~--~~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFT--HLSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc--EEeHHHHH
Confidence 58899999999999999999998755 44554544
No 470
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.09 E-value=0.001 Score=56.30 Aligned_cols=30 Identities=30% Similarity=0.265 Sum_probs=26.4
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCc
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDAC 202 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~ 202 (399)
++...++|.|+.|+|||++++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 456679999999999999999999998754
No 471
>PF13245 AAA_19: Part of AAA domain
Probab=97.09 E-value=0.00082 Score=51.25 Aligned_cols=23 Identities=48% Similarity=0.664 Sum_probs=17.2
Q ss_pred ceeEeCCCCCcHH-HHHHHHHHhc
Q 015875 177 GVLCYGPPGTGKT-LLARAVANRT 199 (399)
Q Consensus 177 ~vLL~GppGtGKT-~larala~~~ 199 (399)
.+++.|||||||| ++++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 4666999999999 6666666554
No 472
>PRK02496 adk adenylate kinase; Provisional
Probab=97.08 E-value=0.0005 Score=61.43 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=25.5
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
.++|.||||+|||++++.++..++.+.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48999999999999999999998876543
No 473
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.08 E-value=0.00048 Score=63.06 Aligned_cols=34 Identities=29% Similarity=0.572 Sum_probs=27.8
Q ss_pred eeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh
Q 015875 178 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 213 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~ 213 (399)
|+|.||||+|||++|+.+|..++.+.+. ..+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHHH
Confidence 7899999999999999999998876554 445543
No 474
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.08 E-value=0.00075 Score=58.28 Aligned_cols=35 Identities=29% Similarity=0.567 Sum_probs=28.5
Q ss_pred EeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhh
Q 015875 180 CYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYV 216 (399)
Q Consensus 180 L~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~ 216 (399)
|.||||+|||++|+.||.+++. ..++..+++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999874 5667777766544
No 475
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.08 E-value=0.0018 Score=68.58 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=25.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.++++..+.|.||+|+|||||++.+++..
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45778889999999999999999999864
No 476
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.07 E-value=0.015 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.9
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
..+.|.|++|+|||+|.+.+.+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999999874
No 477
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.07 E-value=0.0085 Score=52.82 Aligned_cols=33 Identities=27% Similarity=0.227 Sum_probs=26.4
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc---CCceEEEecc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 209 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~---~~~~i~v~~s 209 (399)
.+++.||||+|||++++.++..+ +..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 37899999999999999998864 5566666654
No 478
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.06 E-value=0.0011 Score=65.74 Aligned_cols=23 Identities=43% Similarity=0.541 Sum_probs=21.5
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~ 199 (399)
-+++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 479
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.06 E-value=0.0058 Score=53.41 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.0
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~ 199 (399)
-+.+|+++|.|||++|-++|-+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998754
No 480
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.05 E-value=0.059 Score=52.44 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=29.2
Q ss_pred EEEecCCCHHHHHHHHHHHHhccCCCCcc----cHHHHHHHCCCCcHHHHH
Q 015875 306 KVEFGLPDLESRTQIFKIHTRTMNCERDI----RFELLARLCPNSTGADIR 352 (399)
Q Consensus 306 ~i~~~~P~~~er~~Il~~~~~~~~~~~~~----~~~~la~~~~g~sg~di~ 352 (399)
.++++..+.+|-..+++.+....-+.... -.+.+...+ +.+++++.
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s-~GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS-NGNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-CCCHHHhc
Confidence 78899999999999999887654433211 123333333 44666664
No 481
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.04 E-value=0.0056 Score=66.81 Aligned_cols=101 Identities=16% Similarity=0.253 Sum_probs=54.4
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh-----cCCceE---------------EEeccchhhhhhchhHHHHHHHHHHHHc-CC
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR-----TDACFI---------------RVIGSELVQKYVGEGARMVRELFQMARS-KK 234 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~-----~~~~~i---------------~v~~s~l~~~~~g~~~~~v~~~f~~a~~-~~ 234 (399)
+.++|+||.+.|||++.|.++-. +|+++- .+...+-.....+......+.+...++. ..
T Consensus 328 ~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~ 407 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADK 407 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCc
Confidence 45899999999999999999742 232211 1111111111222223333333332222 57
Q ss_pred CEEEEEecCCcccCCccCCCCCCChHHHHHH-HHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 235 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTM-LEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 235 p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l-~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
|++++|||+..=. ++.....+ ..+++.+.. .+..+|++|+..
T Consensus 408 ~sLvLlDE~~~Gt----------Dp~eg~ala~aile~l~~----~~~~vIitTH~~ 450 (782)
T PRK00409 408 NSLVLFDELGAGT----------DPDEGAALAISILEYLRK----RGAKIIATTHYK 450 (782)
T ss_pred CcEEEecCCCCCC----------CHHHHHHHHHHHHHHHHH----CCCEEEEECChH
Confidence 7899999986532 33322333 345555432 245688888764
No 482
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.04 E-value=0.0017 Score=62.61 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=27.6
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
.-+++.|+|||||||+|+.+++++. .++.++...+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r 38 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLR 38 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHH
Confidence 3588999999999999999999983 34455554443
No 483
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.04 E-value=0.007 Score=55.15 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=24.7
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.++..+.|.||+|+|||||++.++...
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566779999999999999999999753
No 484
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.0064 Score=54.83 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=32.0
Q ss_pred cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 232 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 232 ~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
-+.|++++|||--. |-+-...+.+..++.++. +.+-.||.+|...
T Consensus 149 vh~P~i~vlDEP~s----------GLDi~~~r~~~dfi~q~k----~egr~viFSSH~m 193 (245)
T COG4555 149 VHDPSILVLDEPTS----------GLDIRTRRKFHDFIKQLK----NEGRAVIFSSHIM 193 (245)
T ss_pred hcCCCeEEEcCCCC----------CccHHHHHHHHHHHHHhh----cCCcEEEEecccH
Confidence 47899999999532 335666778888888765 4455688888754
No 485
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.02 E-value=0.00045 Score=57.22 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=20.8
Q ss_pred eeEeCCCCCcHHHHHHHHHHhc
Q 015875 178 VLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~ 199 (399)
|+|.|+||+||||+|+.+++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 486
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.0026 Score=66.96 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.8
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
-++|...+-|.||+|+||||+|..+-+..
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46788899999999999999999998853
No 487
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.01 E-value=0.0033 Score=56.97 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=24.6
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|+|||+|++.++...
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567789999999999999999999853
No 488
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.0061 Score=55.40 Aligned_cols=29 Identities=45% Similarity=0.689 Sum_probs=25.1
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.++..+.|.||+|+|||+|++.++...
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 34667789999999999999999999864
No 489
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.01 E-value=0.0021 Score=58.26 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=32.7
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc-CCceEEEeccchhhh
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT-DACFIRVIGSELVQK 214 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~-~~~~i~v~~s~l~~~ 214 (399)
..|.-+++.|+||+|||+++..+...+ +..++.++..++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 457789999999999999999999988 778899988776553
No 490
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.01 E-value=0.0048 Score=58.75 Aligned_cols=92 Identities=16% Similarity=0.197 Sum_probs=59.4
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHH
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGAR 221 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~ 221 (399)
+++-.+++++.+.++.+. +. .|..+.||.|.+|+||++++|..|.-.+..++.+..+.- -...+...
T Consensus 9 ~lVlf~~ai~hi~ri~Rv-L~----------~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~--y~~~~f~~ 75 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRV-LS----------QPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKG--YSIKDFKE 75 (268)
T ss_dssp -----HHHHHHHHHHHHH-HC----------STTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTT--THHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHH-Hc----------CCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCC--cCHHHHHH
Confidence 367778888887776653 11 244679999999999999999999888888887765431 11334455
Q ss_pred HHHHHHHHHH-cCCCEEEEEecCCcc
Q 015875 222 MVRELFQMAR-SKKACIVFFDEVDAI 246 (399)
Q Consensus 222 ~v~~~f~~a~-~~~p~il~iDEiD~l 246 (399)
.++.++..|. ...|.+++|+|-+-.
T Consensus 76 dLk~~~~~ag~~~~~~vfll~d~qi~ 101 (268)
T PF12780_consen 76 DLKKALQKAGIKGKPTVFLLTDSQIV 101 (268)
T ss_dssp HHHHHHHHHHCS-S-EEEEEECCCSS
T ss_pred HHHHHHHHHhccCCCeEEEecCcccc
Confidence 6677766665 456888888885543
No 491
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.027 Score=55.80 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=33.9
Q ss_pred EEEecCCCHHHHHHHHHHHHhccCCCC----cccHHHHHHHCCCCcHHHHHHHHH
Q 015875 306 KVEFGLPDLESRTQIFKIHTRTMNCER----DIRFELLARLCPNSTGADIRSVCT 356 (399)
Q Consensus 306 ~i~~~~P~~~er~~Il~~~~~~~~~~~----~~~~~~la~~~~g~sg~di~~l~~ 356 (399)
.|+++.++.+|-..++.-+++.--+.+ +..+..+--++ +.+|+.++.+|.
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 578889999999998887776532222 23345555555 668888887773
No 492
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.00 E-value=0.0017 Score=67.90 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=25.7
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
-++++..+.|.||+|+|||||++.++...
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45778889999999999999999999754
No 493
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.99 E-value=0.047 Score=56.42 Aligned_cols=125 Identities=17% Similarity=0.232 Sum_probs=88.2
Q ss_pred CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCC
Q 015875 234 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPD 313 (399)
Q Consensus 234 ~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~ 313 (399)
.|++++|.|+|.++. ++.+.+.|..+...+.. ..+.+||.+.+ ..+++.|. ++...+++|+|+
T Consensus 81 ~~~~~vl~d~h~~~~---------~~~~~r~l~~l~~~~~~---~~~~~i~~~~~--~~~p~el~---~~~~~~~~~lP~ 143 (489)
T CHL00195 81 TPALFLLKDFNRFLN---------DISISRKLRNLSRILKT---QPKTIIIIASE--LNIPKELK---DLITVLEFPLPT 143 (489)
T ss_pred CCcEEEEecchhhhc---------chHHHHHHHHHHHHHHh---CCCEEEEEcCC--CCCCHHHH---hceeEEeecCcC
Confidence 378999999999973 45677777777665543 34455555543 34666665 444788999999
Q ss_pred HHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 015875 314 LESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 314 ~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~ 380 (399)
.+++..+++......+.. .+.+.+.++..+.|++..+++.++..+.. ....++.+++...++
T Consensus 144 ~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~ 206 (489)
T CHL00195 144 ESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA-----TYKTIDENSIPLILE 206 (489)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----HcCCCChhhHHHHHH
Confidence 999999998887654432 34557889999999999999998876432 233477776555444
No 494
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.98 E-value=0.00088 Score=61.31 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=17.0
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~ 199 (399)
-.+++||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 48999999999997666666554
No 495
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.98 E-value=0.0025 Score=60.11 Aligned_cols=29 Identities=34% Similarity=0.529 Sum_probs=25.1
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.++..+.|.||+|+|||||++.++...
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35677789999999999999999999753
No 496
>PRK10867 signal recognition particle protein; Provisional
Probab=96.98 E-value=0.014 Score=59.35 Aligned_cols=196 Identities=16% Similarity=0.180 Sum_probs=99.1
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEeccchhhh----------------h----hchhHHHHHHHHH
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQK----------------Y----VGEGARMVRELFQ 228 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~s~l~~~----------------~----~g~~~~~v~~~f~ 228 (399)
.+|..+++.|++|+||||++..+|..+ +..+..+++..+... + ............+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 456789999999999999888887643 555666665422110 0 0123344455666
Q ss_pred HHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC-CCCCCc--cccCCCCcee
Q 015875 229 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-PDTLDP--ALLRPGRLDR 305 (399)
Q Consensus 229 ~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~-~~~ld~--al~r~gRf~~ 305 (399)
.++.....+|++|=...+.. +......+..+.+.. ....+++++.+.. .+.++. .+...-.++
T Consensus 178 ~a~~~~~DvVIIDTaGrl~~---------d~~lm~eL~~i~~~v----~p~evllVlda~~gq~av~~a~~F~~~~~i~- 243 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRLHI---------DEELMDELKAIKAAV----NPDEILLVVDAMTGQDAVNTAKAFNEALGLT- 243 (433)
T ss_pred HHHhcCCCEEEEeCCCCccc---------CHHHHHHHHHHHHhh----CCCeEEEEEecccHHHHHHHHHHHHhhCCCC-
Confidence 66666778999998766521 233334444443332 2233444433221 111111 111100121
Q ss_pred EEEecCCCHHHHHHHHHHHHhc--cC-----CC------CcccHHHHHHHCCCCcHHHHHHHHHHHHHH---------HH
Q 015875 306 KVEFGLPDLESRTQIFKIHTRT--MN-----CE------RDIRFELLARLCPNSTGADIRSVCTEAGMF---------AI 363 (399)
Q Consensus 306 ~i~~~~P~~~er~~Il~~~~~~--~~-----~~------~~~~~~~la~~~~g~sg~di~~l~~~A~~~---------A~ 363 (399)
-+-+.-.|...|....-..... .+ .. ...+.+.++.+.-| .+|+..++..|... +.
T Consensus 244 giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilg--mgD~~~l~e~~~~~~~~~~~~~~~~ 321 (433)
T PRK10867 244 GVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILG--MGDVLSLIEKAQEVVDEEKAEKLAK 321 (433)
T ss_pred EEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhC--CCChHHHHHHHHHhhCHHHHHHHHH
Confidence 2333444444433322221111 11 11 23346677766544 24677776655432 11
Q ss_pred HHcCCCccHHHHHHHHHHHHh
Q 015875 364 RARRKTVTEKDFLDAVNKVIK 384 (399)
Q Consensus 364 ~~~~~~It~ed~~~ai~~v~~ 384 (399)
+-.....|.+||.+-++.+.+
T Consensus 322 ~~~~g~f~l~d~~~q~~~~~k 342 (433)
T PRK10867 322 KLKKGKFDLEDFLEQLQQMKK 342 (433)
T ss_pred HHHhCCCCHHHHHHHHHHHHh
Confidence 112356899999988887754
No 497
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.97 E-value=0.002 Score=63.17 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=32.8
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 214 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~ 214 (399)
+.+.|.|+||+|||+|++.+++.++.+++.-.+.+....
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~ 201 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEE 201 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHH
Confidence 479999999999999999999999998877666555443
No 498
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.96 E-value=0.0051 Score=66.59 Aligned_cols=24 Identities=46% Similarity=0.660 Sum_probs=21.2
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhc
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~ 199 (399)
+.++|.|+||||||++++++...+
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999997754
No 499
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.94 E-value=0.0069 Score=63.08 Aligned_cols=108 Identities=21% Similarity=0.207 Sum_probs=63.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhh------c----------------------hh
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV------G----------------------EG 219 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~------g----------------------~~ 219 (399)
|++.+..++++|+||+|||+++..++... +.+.+.++..+-..... | ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 67788889999999999999999988643 55666665433211100 0 01
Q ss_pred HHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 220 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 220 ~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
...+..+........+.+++||-+..+.... ......+.+..++..+. ..++.+|++..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~------~~~~~~~~l~~l~~~~k----~~~~t~l~t~~ 407 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALARGG------SLNEFRQFVIRLTDYLK----SEEITGLFTNL 407 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC------CHHHHHHHHHHHHHHHH----hCCCeEEEEec
Confidence 1223334444455678899999998875321 12233444444555443 34555666643
No 500
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.94 E-value=0.0012 Score=59.07 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=43.0
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc-------------CCceEEEeccchh----hhh---hch---------------
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT-------------DACFIRVIGSELV----QKY---VGE--------------- 218 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~-------------~~~~i~v~~s~l~----~~~---~g~--------------- 218 (399)
...-++|+||||+|||+++..++... +..++.++...-. ..+ .+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccc
Confidence 34569999999999999999998754 2355666543211 100 000
Q ss_pred --------------hHHHHHHHHHHHHc-CCCEEEEEecCCcccCC
Q 015875 219 --------------GARMVRELFQMARS-KKACIVFFDEVDAIGGA 249 (399)
Q Consensus 219 --------------~~~~v~~~f~~a~~-~~p~il~iDEiD~l~~~ 249 (399)
....+..+.+.+.. ..+.+|+||-+..+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 11223445555565 57889999999999764
Done!