Query 015875
Match_columns 399
No_of_seqs 478 out of 2931
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 04:02:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_H 26S protease regulatory 100.0 1.2E-83 4.1E-88 642.7 35.8 399 1-399 39-467 (467)
2 4b4t_J 26S protease regulatory 100.0 3.1E-72 1.1E-76 554.1 38.3 376 4-388 20-395 (405)
3 4b4t_I 26S protease regulatory 100.0 3.9E-67 1.3E-71 519.1 40.2 331 56-390 101-431 (437)
4 4b4t_L 26S protease subunit RP 100.0 5.7E-66 1.9E-70 516.8 41.4 359 12-386 68-426 (437)
5 4b4t_K 26S protease regulatory 100.0 2.1E-64 7.1E-69 504.7 37.1 334 48-385 83-417 (428)
6 4b4t_M 26S protease regulatory 100.0 1.9E-64 6.3E-69 505.4 35.9 338 49-386 67-426 (434)
7 3cf2_A TER ATPase, transitiona 100.0 7.9E-48 2.7E-52 410.0 11.3 263 124-386 460-747 (806)
8 3cf2_A TER ATPase, transitiona 100.0 9.8E-45 3.4E-49 386.2 19.9 251 133-386 196-463 (806)
9 3h4m_A Proteasome-activating n 100.0 1.2E-40 4E-45 317.3 27.3 261 129-389 5-265 (285)
10 3cf0_A Transitional endoplasmi 100.0 3.2E-41 1.1E-45 324.9 20.6 254 132-385 6-284 (301)
11 2ce7_A Cell division protein F 100.0 5E-40 1.7E-44 333.5 27.1 251 135-386 10-260 (476)
12 1lv7_A FTSH; alpha/beta domain 100.0 1.9E-39 6.5E-44 304.9 27.3 255 130-385 1-255 (257)
13 2x8a_A Nuclear valosin-contain 100.0 2.1E-40 7.3E-45 315.1 20.7 250 134-386 3-268 (274)
14 1xwi_A SKD1 protein; VPS4B, AA 100.0 7.8E-39 2.7E-43 311.2 24.3 228 132-365 3-233 (322)
15 3eie_A Vacuolar protein sortin 100.0 6E-39 2E-43 311.8 20.9 251 130-386 7-302 (322)
16 2qz4_A Paraplegin; AAA+, SPG7, 100.0 4.9E-38 1.7E-42 295.0 20.9 253 136-389 1-256 (262)
17 2dhr_A FTSH; AAA+ protein, hex 100.0 1.1E-37 3.9E-42 317.9 24.1 252 136-388 26-277 (499)
18 2qp9_X Vacuolar protein sortin 100.0 6.2E-38 2.1E-42 308.7 20.6 252 129-386 39-335 (355)
19 3hu3_A Transitional endoplasmi 100.0 2.2E-37 7.5E-42 316.1 24.9 249 135-386 198-463 (489)
20 1ixz_A ATP-dependent metallopr 100.0 7.5E-36 2.6E-40 279.9 26.1 247 132-379 7-253 (254)
21 2zan_A Vacuolar protein sortin 100.0 1.7E-36 5.9E-41 306.9 18.5 232 128-365 121-355 (444)
22 1iy2_A ATP-dependent metallopr 100.0 1.8E-34 6.3E-39 274.3 26.9 247 132-379 31-277 (278)
23 3b9p_A CG5977-PA, isoform A; A 100.0 4.8E-35 1.6E-39 280.3 19.8 252 130-384 10-274 (297)
24 2r62_A Cell division protease 100.0 6.5E-38 2.2E-42 295.9 -0.9 258 134-392 4-263 (268)
25 3d8b_A Fidgetin-like protein 1 100.0 3E-34 1E-38 282.6 23.0 250 131-386 74-338 (357)
26 3vfd_A Spastin; ATPase, microt 100.0 1E-33 3.4E-38 281.9 22.1 257 124-384 98-367 (389)
27 1ypw_A Transitional endoplasmi 100.0 9.5E-37 3.3E-41 328.9 -6.4 237 130-366 466-702 (806)
28 1ypw_A Transitional endoplasmi 100.0 1.9E-30 6.3E-35 279.9 23.7 247 134-383 197-460 (806)
29 3t15_A Ribulose bisphosphate c 99.9 2.1E-27 7E-32 227.7 12.3 176 171-352 32-221 (293)
30 2c9o_A RUVB-like 1; hexameric 99.9 2.1E-25 7.3E-30 226.3 12.1 169 135-312 31-224 (456)
31 3pfi_A Holliday junction ATP-d 99.9 5.3E-23 1.8E-27 200.1 23.1 223 130-382 18-254 (338)
32 3syl_A Protein CBBX; photosynt 99.9 2E-23 6.9E-28 200.3 18.6 224 142-378 32-282 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 1.9E-23 6.4E-28 205.4 18.5 221 135-382 38-330 (368)
34 1hqc_A RUVB; extended AAA-ATPa 99.9 2.4E-22 8.1E-27 194.0 20.9 221 133-382 4-238 (324)
35 2chg_A Replication factor C sm 99.9 2.5E-20 8.7E-25 168.3 21.7 207 130-380 6-224 (226)
36 2v1u_A Cell division control p 99.9 2E-20 7E-25 183.9 21.7 226 137-384 15-278 (387)
37 3m6a_A ATP-dependent protease 99.9 2.6E-22 8.8E-27 207.7 6.2 228 138-383 78-342 (543)
38 1ofh_A ATP-dependent HSL prote 99.9 3.8E-21 1.3E-25 183.9 13.9 240 141-382 15-299 (310)
39 3pvs_A Replication-associated 99.8 1.7E-20 5.7E-25 189.5 17.1 210 131-382 16-244 (447)
40 3u61_B DNA polymerase accessor 99.8 2.2E-20 7.6E-25 180.6 16.1 208 129-381 14-236 (324)
41 1d2n_A N-ethylmaleimide-sensit 99.8 7.5E-21 2.6E-25 179.6 11.3 225 141-382 33-264 (272)
42 1g8p_A Magnesium-chelatase 38 99.8 1E-19 3.5E-24 177.2 19.4 225 133-386 16-326 (350)
43 1njg_A DNA polymerase III subu 99.8 3.1E-19 1.1E-23 162.9 20.3 208 130-379 12-248 (250)
44 1l8q_A Chromosomal replication 99.8 1.7E-19 5.9E-24 174.5 19.4 220 135-383 5-241 (324)
45 2z4s_A Chromosomal replication 99.8 1.5E-19 5E-24 182.5 19.4 222 134-383 98-333 (440)
46 1sxj_A Activator 1 95 kDa subu 99.8 4.3E-20 1.5E-24 190.1 15.4 233 127-382 25-274 (516)
47 3hws_A ATP-dependent CLP prote 99.8 7.8E-20 2.7E-24 179.9 16.5 234 143-378 17-345 (363)
48 2r44_A Uncharacterized protein 99.8 2.9E-19 1E-23 173.3 18.9 222 135-385 21-300 (331)
49 1sxj_D Activator 1 41 kDa subu 99.8 2.6E-19 8.8E-24 174.4 18.1 213 129-380 25-261 (353)
50 1g41_A Heat shock protein HSLU 99.8 3E-21 1E-25 193.3 4.2 169 142-322 16-189 (444)
51 3bos_A Putative DNA replicatio 99.8 6.6E-19 2.3E-23 161.6 17.8 207 135-380 22-241 (242)
52 2qby_B CDC6 homolog 3, cell di 99.8 3.8E-19 1.3E-23 175.2 16.6 212 141-383 20-271 (384)
53 1in4_A RUVB, holliday junction 99.8 7.6E-18 2.6E-22 164.0 24.5 222 132-383 16-251 (334)
54 3te6_A Regulatory protein SIR3 99.8 6.5E-20 2.2E-24 176.6 9.3 215 143-383 22-316 (318)
55 1jbk_A CLPB protein; beta barr 99.8 1.7E-19 5.8E-24 159.1 11.0 162 134-321 15-194 (195)
56 2chq_A Replication factor C sm 99.8 5.6E-19 1.9E-23 169.3 14.6 210 130-379 6-223 (319)
57 1r6b_X CLPA protein; AAA+, N-t 99.8 1.8E-18 6.1E-23 185.9 20.1 225 133-382 178-433 (758)
58 2qby_A CDC6 homolog 1, cell di 99.8 2.1E-18 7.3E-23 169.1 19.0 224 138-383 17-273 (386)
59 1sxj_B Activator 1 37 kDa subu 99.8 4.7E-18 1.6E-22 163.2 19.9 207 130-380 10-229 (323)
60 1um8_A ATP-dependent CLP prote 99.8 2.7E-19 9.4E-24 176.7 11.5 237 142-380 22-363 (376)
61 1fnn_A CDC6P, cell division co 99.8 4.4E-18 1.5E-22 167.6 19.4 222 139-383 15-275 (389)
62 3pxg_A Negative regulator of g 99.8 5.2E-19 1.8E-23 179.9 12.6 210 132-382 171-406 (468)
63 1iqp_A RFCS; clamp loader, ext 99.8 7.4E-18 2.5E-22 162.0 20.1 196 129-359 13-216 (327)
64 4fcw_A Chaperone protein CLPB; 99.8 2.4E-18 8.3E-23 164.8 16.5 206 141-363 17-279 (311)
65 2bjv_A PSP operon transcriptio 99.8 3.2E-19 1.1E-23 167.6 9.8 207 138-375 3-250 (265)
66 3pxi_A Negative regulator of g 99.8 3.1E-18 1.1E-22 184.0 17.9 197 141-362 491-724 (758)
67 1jr3_A DNA polymerase III subu 99.8 8E-18 2.7E-22 165.1 19.1 207 131-379 6-241 (373)
68 1r6b_X CLPA protein; AAA+, N-t 99.8 5.5E-18 1.9E-22 182.1 16.7 197 142-361 459-714 (758)
69 1ojl_A Transcriptional regulat 99.8 5.6E-19 1.9E-23 169.8 6.9 207 142-376 3-246 (304)
70 1sxj_E Activator 1 40 kDa subu 99.8 1.8E-17 6.3E-22 161.7 17.6 196 129-361 2-243 (354)
71 1qvr_A CLPB protein; coiled co 99.7 3E-17 1E-21 178.4 20.4 207 133-365 162-395 (854)
72 3pxi_A Negative regulator of g 99.7 6.3E-18 2.1E-22 181.6 14.3 193 132-365 171-388 (758)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 4.5E-18 1.5E-22 173.6 10.9 205 142-376 23-280 (500)
74 2p65_A Hypothetical protein PF 99.7 6.5E-18 2.2E-22 148.6 10.4 155 134-313 15-187 (187)
75 1sxj_C Activator 1 40 kDa subu 99.7 7.4E-17 2.5E-21 157.1 16.4 213 128-379 12-236 (340)
76 1qvr_A CLPB protein; coiled co 99.7 6.5E-17 2.2E-21 175.8 12.6 203 140-363 557-820 (854)
77 3f9v_A Minichromosome maintena 99.7 3.2E-17 1.1E-21 171.1 8.9 226 142-387 296-592 (595)
78 3co5_A Putative two-component 99.6 4.3E-17 1.5E-21 139.1 4.1 112 142-290 5-116 (143)
79 3n70_A Transport activator; si 99.6 2.6E-16 9E-21 134.5 8.5 112 142-290 2-116 (145)
80 3k1j_A LON protease, ATP-depen 99.6 1.3E-15 4.6E-20 159.5 14.2 221 133-381 33-374 (604)
81 3dzd_A Transcriptional regulat 99.6 5E-17 1.7E-21 160.2 0.7 272 43-371 59-367 (368)
82 1ny5_A Transcriptional regulat 99.6 3.7E-16 1.3E-20 155.1 6.3 292 43-380 59-385 (387)
83 1w5s_A Origin recognition comp 99.6 7.5E-14 2.6E-18 138.4 18.6 229 139-383 20-294 (412)
84 3vlf_B 26S protease regulatory 99.6 1E-14 3.4E-19 114.0 8.7 87 313-399 2-88 (88)
85 1a5t_A Delta prime, HOLB; zinc 99.5 1.2E-13 4.1E-18 134.2 17.4 174 144-356 5-206 (334)
86 3cmw_A Protein RECA, recombina 99.5 2.7E-14 9.4E-19 161.8 7.7 155 135-290 1014-1218(1706)
87 3kw6_A 26S protease regulatory 99.5 2E-13 6.9E-18 104.1 9.2 76 310-385 1-76 (78)
88 2gno_A DNA polymerase III, gam 99.5 6.9E-13 2.4E-17 127.3 15.2 142 145-325 1-152 (305)
89 2krk_A 26S protease regulatory 99.4 3.5E-13 1.2E-17 104.6 8.4 77 309-385 8-84 (86)
90 3ec2_A DNA replication protein 99.3 4.1E-12 1.4E-16 111.9 10.9 131 135-290 4-143 (180)
91 2wg5_A General control protein 99.3 7.2E-12 2.4E-16 101.3 10.1 101 10-133 8-108 (109)
92 3f8t_A Predicted ATPase involv 99.3 8E-11 2.7E-15 117.6 17.6 220 143-388 215-489 (506)
93 4akg_A Glutathione S-transfera 99.2 4.6E-11 1.6E-15 141.0 14.0 140 174-328 1266-1434(2695)
94 2fna_A Conserved hypothetical 99.2 9.3E-10 3.2E-14 106.2 20.8 189 135-357 7-252 (357)
95 3aji_B S6C, proteasome (prosom 99.2 2E-11 6.7E-16 94.1 7.0 75 313-387 2-76 (83)
96 2qen_A Walker-type ATPase; unk 99.2 1.3E-09 4.5E-14 104.9 21.1 192 135-356 6-247 (350)
97 2kjq_A DNAA-related protein; s 99.1 4.9E-11 1.7E-15 102.3 6.8 103 174-307 35-143 (149)
98 2w58_A DNAI, primosome compone 99.1 7.5E-11 2.6E-15 105.5 8.3 100 136-246 20-127 (202)
99 2dzn_B 26S protease regulatory 99.1 2.7E-11 9.2E-16 93.1 2.0 71 315-385 1-71 (82)
100 2vhj_A Ntpase P4, P4; non- hyd 99.0 1.4E-10 4.9E-15 110.9 3.4 122 171-297 119-242 (331)
101 2qgz_A Helicase loader, putati 99.0 4.1E-10 1.4E-14 108.1 5.7 98 137-246 120-226 (308)
102 4akg_A Glutathione S-transfera 98.9 3E-08 1E-12 117.3 21.6 183 175-382 645-857 (2695)
103 1jr3_D DNA polymerase III, del 98.8 7.1E-08 2.4E-12 93.4 13.7 177 174-382 17-209 (343)
104 1svm_A Large T antigen; AAA+ f 98.7 9.7E-09 3.3E-13 101.0 6.2 120 170-311 164-284 (377)
105 3h43_A Proteasome-activating n 98.7 2.7E-08 9.4E-13 76.3 6.9 63 54-120 14-76 (85)
106 2r2a_A Uncharacterized protein 98.7 1.2E-08 4.1E-13 91.5 5.3 128 175-315 5-156 (199)
107 1tue_A Replication protein E1; 98.7 3.2E-08 1.1E-12 88.6 6.8 33 171-203 54-86 (212)
108 3cmu_A Protein RECA, recombina 98.6 1E-07 3.5E-12 109.7 10.9 124 163-286 1412-1560(2050)
109 3vkg_A Dynein heavy chain, cyt 98.6 2.2E-07 7.5E-12 110.9 12.3 162 176-361 605-799 (3245)
110 3vkg_A Dynein heavy chain, cyt 98.5 4.9E-07 1.7E-11 107.9 14.2 139 175-327 1304-1471(3245)
111 1u0j_A DNA replication protein 98.5 1.7E-07 5.8E-12 87.5 6.7 119 174-322 103-248 (267)
112 1ye8_A Protein THEP1, hypothet 98.4 8E-07 2.7E-11 78.1 9.9 27 177-203 2-28 (178)
113 1n0w_A DNA repair protein RAD5 98.2 3.8E-06 1.3E-10 76.4 9.9 79 171-249 20-134 (243)
114 1z6t_A APAF-1, apoptotic prote 98.2 1.6E-05 5.6E-10 82.2 15.5 167 140-348 123-322 (591)
115 2w0m_A SSO2452; RECA, SSPF, un 98.2 4.3E-06 1.5E-10 75.3 9.6 109 171-290 19-168 (235)
116 2cvh_A DNA repair and recombin 98.2 3.5E-06 1.2E-10 75.4 8.4 40 171-210 16-55 (220)
117 3hr8_A Protein RECA; alpha and 98.2 3E-06 1E-10 82.5 8.3 117 171-287 57-195 (356)
118 1xp8_A RECA protein, recombina 98.2 6E-06 2.1E-10 80.8 10.3 118 171-288 70-209 (366)
119 3sfz_A APAF-1, apoptotic pepti 98.2 6.2E-05 2.1E-09 84.1 19.9 172 137-348 120-322 (1249)
120 2ehv_A Hypothetical protein PH 98.2 5.8E-06 2E-10 75.5 9.1 129 171-310 26-206 (251)
121 2zr9_A Protein RECA, recombina 98.1 2.2E-06 7.6E-11 83.4 6.5 78 171-248 57-153 (349)
122 3upu_A ATP-dependent DNA helic 98.1 3.3E-06 1.1E-10 85.1 7.5 60 126-199 9-69 (459)
123 3cmu_A Protein RECA, recombina 98.1 2.6E-06 8.9E-11 98.3 5.5 129 161-289 715-868 (2050)
124 1u94_A RECA protein, recombina 98.0 6.7E-06 2.3E-10 80.2 7.1 78 171-248 59-155 (356)
125 2z43_A DNA repair and recombin 98.0 7.6E-06 2.6E-10 78.6 6.1 117 171-288 103-256 (324)
126 1v5w_A DMC1, meiotic recombina 97.9 1.1E-05 3.9E-10 78.1 6.9 118 171-289 118-273 (343)
127 3lda_A DNA repair protein RAD5 97.9 1.4E-05 4.6E-10 79.2 7.5 118 171-289 174-327 (400)
128 4a74_A DNA repair and recombin 97.9 1E-05 3.6E-10 72.8 5.0 28 171-198 21-48 (231)
129 1qhx_A CPT, protein (chloramph 97.9 3.7E-05 1.2E-09 66.5 8.3 37 175-211 3-39 (178)
130 3io5_A Recombination and repai 97.8 3.2E-05 1.1E-09 73.7 8.0 116 171-287 25-169 (333)
131 1pzn_A RAD51, DNA repair and r 97.8 2.5E-05 8.5E-10 75.9 7.5 41 170-210 126-175 (349)
132 3m9b_A Proteasome-associated A 97.8 3.8E-05 1.3E-09 69.7 7.9 67 54-126 94-160 (251)
133 2dr3_A UPF0273 protein PH0284; 97.8 7.2E-05 2.5E-09 67.9 9.6 38 171-208 19-59 (247)
134 3cmw_A Protein RECA, recombina 97.8 2.6E-05 8.9E-10 89.1 6.8 78 171-248 728-824 (1706)
135 2orw_A Thymidine kinase; TMTK, 97.7 8E-06 2.7E-10 72.0 1.6 23 176-198 4-26 (184)
136 2i1q_A DNA repair and recombin 97.7 2.9E-05 9.8E-10 74.4 5.4 116 171-287 94-256 (322)
137 2iut_A DNA translocase FTSK; n 97.7 0.00037 1.3E-08 71.5 13.5 74 236-322 345-420 (574)
138 2a5y_B CED-4; apoptosis; HET: 97.7 0.00041 1.4E-08 71.3 13.8 167 144-348 131-331 (549)
139 2b8t_A Thymidine kinase; deoxy 97.7 0.0001 3.5E-09 67.0 7.9 71 175-246 12-101 (223)
140 3vaa_A Shikimate kinase, SK; s 97.6 3.6E-05 1.2E-09 68.2 4.7 35 172-206 22-56 (199)
141 1nlf_A Regulatory protein REPA 97.6 6.6E-05 2.3E-09 70.2 6.3 28 171-198 26-53 (279)
142 3jvv_A Twitching mobility prot 97.6 0.00012 4.1E-09 71.2 8.0 97 174-291 122-232 (356)
143 3trf_A Shikimate kinase, SK; a 97.6 4.7E-05 1.6E-09 66.3 4.5 32 175-206 5-36 (185)
144 1g41_A Heat shock protein HSLU 97.6 0.00029 9.9E-09 70.4 10.5 158 220-383 238-434 (444)
145 2r8r_A Sensor protein; KDPD, P 97.6 0.0018 6.2E-08 58.6 14.6 160 177-362 8-208 (228)
146 2rhm_A Putative kinase; P-loop 97.5 4.9E-05 1.7E-09 66.4 4.2 34 172-205 2-35 (193)
147 2p5t_B PEZT; postsegregational 97.5 0.00026 9.1E-09 65.2 9.2 39 173-211 30-68 (253)
148 1zp6_A Hypothetical protein AT 97.5 5.9E-05 2E-09 65.9 3.8 40 172-211 6-45 (191)
149 2ius_A DNA translocase FTSK; n 97.5 0.00036 1.2E-08 71.0 9.7 76 235-323 297-375 (512)
150 2r6a_A DNAB helicase, replicat 97.5 0.00022 7.4E-09 71.7 7.9 38 171-208 199-240 (454)
151 3iij_A Coilin-interacting nucl 97.4 0.00011 3.9E-09 63.7 5.0 32 174-205 10-41 (180)
152 2zts_A Putative uncharacterize 97.4 0.0003 1E-08 63.8 7.9 38 171-208 26-67 (251)
153 1kag_A SKI, shikimate kinase I 97.4 0.00011 3.8E-09 63.1 4.6 30 175-204 4-33 (173)
154 3kb2_A SPBC2 prophage-derived 97.4 8.8E-05 3E-09 63.4 3.9 31 177-207 3-33 (173)
155 1y63_A LMAJ004144AAA protein; 97.4 8E-05 2.7E-09 65.2 3.4 31 174-204 9-40 (184)
156 1via_A Shikimate kinase; struc 97.4 0.00011 3.7E-09 63.5 4.2 29 177-205 6-34 (175)
157 1cr0_A DNA primase/helicase; R 97.4 0.00025 8.4E-09 66.8 6.9 37 171-207 31-71 (296)
158 3e1s_A Exodeoxyribonuclease V, 97.4 0.00016 5.4E-09 74.9 5.8 32 176-207 205-239 (574)
159 1gvn_B Zeta; postsegregational 97.4 0.00016 5.5E-09 68.2 5.4 39 173-211 31-69 (287)
160 3dm5_A SRP54, signal recogniti 97.4 0.0016 5.6E-08 64.9 12.7 195 174-384 99-342 (443)
161 2iyv_A Shikimate kinase, SK; t 97.3 0.00015 5.2E-09 63.0 4.6 30 176-205 3-32 (184)
162 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00039 1.3E-08 64.4 7.4 38 175-212 4-44 (260)
163 1g5t_A COB(I)alamin adenosyltr 97.3 0.0018 6.1E-08 57.4 11.3 117 176-310 29-178 (196)
164 2i3b_A HCR-ntpase, human cance 97.3 0.00028 9.6E-09 62.3 6.0 23 177-199 3-25 (189)
165 2eyu_A Twitching motility prot 97.3 8.3E-05 2.8E-09 69.2 2.6 72 173-244 23-108 (261)
166 1zuh_A Shikimate kinase; alpha 97.3 0.00016 5.4E-09 62.0 4.2 31 176-206 8-38 (168)
167 2cdn_A Adenylate kinase; phosp 97.3 0.00021 7.2E-09 63.2 4.8 33 174-206 19-51 (201)
168 4gp7_A Metallophosphoesterase; 97.3 0.00016 5.4E-09 62.6 3.8 22 173-194 7-28 (171)
169 1aky_A Adenylate kinase; ATP:A 97.3 0.00021 7.1E-09 64.2 4.6 32 174-205 3-34 (220)
170 3kl4_A SRP54, signal recogniti 97.2 0.0016 5.3E-08 64.9 11.3 197 174-384 96-342 (433)
171 1tf7_A KAIC; homohexamer, hexa 97.2 0.0014 4.9E-08 66.9 11.3 114 171-293 35-188 (525)
172 2q6t_A DNAB replication FORK h 97.2 0.00049 1.7E-08 68.8 7.6 38 171-208 196-237 (444)
173 2ze6_A Isopentenyl transferase 97.2 0.00017 6E-09 66.6 4.0 32 177-208 3-34 (253)
174 3t61_A Gluconokinase; PSI-biol 97.2 0.00025 8.7E-09 62.7 4.8 31 175-205 18-48 (202)
175 1tev_A UMP-CMP kinase; ploop, 97.2 0.00019 6.5E-09 62.5 3.9 36 175-212 3-38 (196)
176 2c95_A Adenylate kinase 1; tra 97.2 0.0002 6.9E-09 62.6 4.0 32 174-205 8-39 (196)
177 1e6c_A Shikimate kinase; phosp 97.2 0.00025 8.4E-09 60.8 4.4 30 176-205 3-32 (173)
178 3cm0_A Adenylate kinase; ATP-b 97.2 0.00017 5.8E-09 62.7 3.3 30 175-204 4-33 (186)
179 2vli_A Antibiotic resistance p 97.2 0.00016 5.4E-09 62.6 3.1 30 175-204 5-34 (183)
180 3lw7_A Adenylate kinase relate 97.2 0.00024 8.1E-09 60.5 4.1 29 177-206 3-31 (179)
181 1ly1_A Polynucleotide kinase; 97.2 0.00016 5.6E-09 62.2 3.0 27 176-202 3-30 (181)
182 1vma_A Cell division protein F 97.2 0.0036 1.2E-07 59.5 12.5 73 173-245 102-197 (306)
183 1tf7_A KAIC; homohexamer, hexa 97.2 0.0013 4.4E-08 67.3 10.1 110 171-290 277-417 (525)
184 1zd8_A GTP:AMP phosphotransfer 97.2 0.00023 7.9E-09 64.3 4.0 32 174-205 6-37 (227)
185 3umf_A Adenylate kinase; rossm 97.2 0.00024 8.1E-09 64.2 4.0 39 173-213 27-65 (217)
186 2ewv_A Twitching motility prot 97.2 0.00021 7.1E-09 70.0 3.9 78 167-244 128-219 (372)
187 1kht_A Adenylate kinase; phosp 97.2 0.00023 7.8E-09 61.9 3.7 25 176-200 4-28 (192)
188 4eun_A Thermoresistant glucoki 97.1 0.00031 1.1E-08 62.1 4.6 37 173-211 27-63 (200)
189 3be4_A Adenylate kinase; malar 97.1 0.00022 7.6E-09 64.0 3.7 32 175-206 5-36 (217)
190 2fz4_A DNA repair protein RAD2 97.1 0.00077 2.6E-08 61.5 7.3 36 177-212 110-146 (237)
191 3bh0_A DNAB-like replicative h 97.1 0.0011 3.8E-08 63.2 8.6 38 171-208 64-104 (315)
192 2pez_A Bifunctional 3'-phospho 97.1 0.0003 1E-08 60.9 4.2 38 174-211 4-44 (179)
193 1knq_A Gluconate kinase; ALFA/ 97.1 0.0003 1E-08 60.6 4.0 35 175-211 8-42 (175)
194 1ak2_A Adenylate kinase isoenz 97.1 0.00035 1.2E-08 63.4 4.7 32 175-206 16-47 (233)
195 4g1u_C Hemin import ATP-bindin 97.1 0.0015 5.3E-08 60.7 9.1 45 234-291 165-209 (266)
196 2bwj_A Adenylate kinase 5; pho 97.1 0.00029 1E-08 61.7 4.0 36 175-212 12-47 (199)
197 2pt5_A Shikimate kinase, SK; a 97.1 0.00037 1.3E-08 59.4 4.3 29 177-205 2-30 (168)
198 1qf9_A UMP/CMP kinase, protein 97.1 0.00033 1.1E-08 60.9 4.1 31 175-205 6-36 (194)
199 1zak_A Adenylate kinase; ATP:A 97.1 0.00027 9.3E-09 63.5 3.6 31 174-204 4-34 (222)
200 3dl0_A Adenylate kinase; phosp 97.1 0.00035 1.2E-08 62.4 4.3 30 177-206 2-31 (216)
201 3tlx_A Adenylate kinase 2; str 97.1 0.00034 1.1E-08 64.2 4.2 33 173-205 27-59 (243)
202 3fb4_A Adenylate kinase; psych 97.1 0.00037 1.3E-08 62.2 4.3 30 177-206 2-31 (216)
203 3crm_A TRNA delta(2)-isopenten 97.1 0.00094 3.2E-08 63.9 7.2 33 176-208 6-38 (323)
204 1vt4_I APAF-1 related killer D 97.1 0.0026 8.9E-08 69.5 11.4 44 143-198 130-173 (1221)
205 3tui_C Methionine import ATP-b 97.1 0.0027 9.2E-08 61.8 10.5 46 232-290 179-224 (366)
206 1ukz_A Uridylate kinase; trans 97.1 0.00038 1.3E-08 61.4 4.2 31 175-205 15-45 (203)
207 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.0007 2.4E-08 65.1 6.2 73 173-245 169-251 (330)
208 1vpl_A ABC transporter, ATP-bi 97.0 0.0042 1.4E-07 57.4 11.2 29 171-199 37-65 (256)
209 3uie_A Adenylyl-sulfate kinase 97.0 0.00046 1.6E-08 61.0 4.3 39 173-211 23-64 (200)
210 3sr0_A Adenylate kinase; phosp 97.0 0.00046 1.6E-08 61.8 4.1 34 177-212 2-35 (206)
211 3gfo_A Cobalt import ATP-bindi 97.0 0.0026 8.8E-08 59.5 9.4 49 232-293 159-207 (275)
212 3rlf_A Maltose/maltodextrin im 97.0 0.0025 8.4E-08 62.4 9.4 28 172-199 26-53 (381)
213 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00034 1.2E-08 67.7 2.9 29 177-205 26-54 (359)
214 2v54_A DTMP kinase, thymidylat 96.9 0.00068 2.3E-08 59.6 4.7 34 174-207 3-37 (204)
215 1cke_A CK, MSSA, protein (cyti 96.9 0.00065 2.2E-08 60.9 4.7 29 176-204 6-34 (227)
216 1nks_A Adenylate kinase; therm 96.9 0.00049 1.7E-08 59.7 3.6 33 177-209 3-38 (194)
217 2pbr_A DTMP kinase, thymidylat 96.9 0.00073 2.5E-08 58.8 4.7 31 177-207 2-35 (195)
218 2bbw_A Adenylate kinase 4, AK4 96.9 0.00064 2.2E-08 62.2 4.4 31 174-204 26-56 (246)
219 3nwj_A ATSK2; P loop, shikimat 96.9 0.00046 1.6E-08 63.7 3.4 32 175-206 48-79 (250)
220 2jaq_A Deoxyguanosine kinase; 96.9 0.00061 2.1E-08 59.8 4.0 29 177-205 2-30 (205)
221 3thx_B DNA mismatch repair pro 96.9 0.003 1E-07 68.5 10.0 107 173-292 671-798 (918)
222 3fvq_A Fe(3+) IONS import ATP- 96.9 0.005 1.7E-07 59.7 10.6 28 172-199 27-54 (359)
223 2yyz_A Sugar ABC transporter, 96.9 0.0044 1.5E-07 60.1 10.3 28 172-199 26-53 (359)
224 1e4v_A Adenylate kinase; trans 96.9 0.00062 2.1E-08 60.8 3.9 30 177-206 2-31 (214)
225 1z47_A CYSA, putative ABC-tran 96.8 0.0041 1.4E-07 60.3 9.7 28 172-199 38-65 (355)
226 2xb4_A Adenylate kinase; ATP-b 96.8 0.00077 2.6E-08 60.8 4.2 34 177-212 2-35 (223)
227 3r20_A Cytidylate kinase; stru 96.8 0.00089 3E-08 61.1 4.4 30 175-204 9-38 (233)
228 2xau_A PRE-mRNA-splicing facto 96.8 0.0036 1.2E-07 67.0 9.8 63 134-197 68-131 (773)
229 2z0h_A DTMP kinase, thymidylat 96.8 0.001 3.5E-08 58.1 4.6 30 178-207 3-35 (197)
230 1q57_A DNA primase/helicase; d 96.8 0.0026 9E-08 64.5 8.3 38 171-208 238-279 (503)
231 2it1_A 362AA long hypothetical 96.8 0.0043 1.5E-07 60.3 9.4 28 172-199 26-53 (362)
232 3b6e_A Interferon-induced heli 96.7 0.0059 2E-07 53.7 9.3 23 176-198 49-71 (216)
233 2plr_A DTMP kinase, probable t 96.7 0.0012 4.2E-08 58.2 4.7 28 175-202 4-31 (213)
234 3ake_A Cytidylate kinase; CMP 96.7 0.00097 3.3E-08 58.7 4.0 29 177-205 4-32 (208)
235 2wwf_A Thymidilate kinase, put 96.7 0.00042 1.4E-08 61.4 1.5 29 174-202 9-37 (212)
236 3llm_A ATP-dependent RNA helic 96.7 0.0069 2.4E-07 54.8 9.8 22 175-196 76-97 (235)
237 2if2_A Dephospho-COA kinase; a 96.7 0.00093 3.2E-08 58.9 3.8 28 177-205 3-30 (204)
238 3d31_A Sulfate/molybdate ABC t 96.7 0.0058 2E-07 59.1 9.6 28 172-199 23-50 (348)
239 2qor_A Guanylate kinase; phosp 96.7 0.0011 3.8E-08 58.7 4.2 29 172-200 9-37 (204)
240 1jjv_A Dephospho-COA kinase; P 96.7 0.00098 3.4E-08 58.9 3.7 32 177-211 4-35 (206)
241 1g29_1 MALK, maltose transport 96.7 0.0039 1.3E-07 60.9 8.2 28 172-199 26-53 (372)
242 1nn5_A Similar to deoxythymidy 96.7 0.0005 1.7E-08 61.0 1.7 28 174-201 8-35 (215)
243 3thx_A DNA mismatch repair pro 96.7 0.0053 1.8E-07 66.8 10.0 103 175-290 662-785 (934)
244 1kgd_A CASK, peripheral plasma 96.7 0.0011 3.8E-08 57.6 3.9 27 174-200 4-30 (180)
245 4e22_A Cytidylate kinase; P-lo 96.6 0.0014 4.7E-08 60.4 4.5 30 175-204 27-56 (252)
246 3bgw_A DNAB-like replicative h 96.6 0.0036 1.2E-07 62.6 7.8 38 171-208 193-233 (444)
247 1uf9_A TT1252 protein; P-loop, 96.6 0.0011 3.9E-08 58.1 3.7 35 175-212 8-42 (203)
248 2grj_A Dephospho-COA kinase; T 96.6 0.0022 7.5E-08 56.7 5.4 37 177-215 14-50 (192)
249 2j41_A Guanylate kinase; GMP, 96.6 0.0012 4E-08 58.2 3.6 27 173-199 4-30 (207)
250 3nh6_A ATP-binding cassette SU 96.6 0.007 2.4E-07 57.4 9.1 29 171-199 76-104 (306)
251 3a8t_A Adenylate isopentenyltr 96.6 0.00093 3.2E-08 64.2 3.0 35 175-209 40-74 (339)
252 1uj2_A Uridine-cytidine kinase 96.6 0.0017 6E-08 59.5 4.7 40 174-213 21-68 (252)
253 2yvu_A Probable adenylyl-sulfa 96.5 0.0021 7.1E-08 55.9 4.7 37 174-210 12-51 (186)
254 3tau_A Guanylate kinase, GMP k 96.5 0.0019 6.6E-08 57.4 4.4 27 174-200 7-33 (208)
255 2gxq_A Heat resistant RNA depe 96.5 0.011 3.9E-07 51.6 9.5 24 175-198 38-62 (207)
256 3foz_A TRNA delta(2)-isopenten 96.5 0.0014 4.9E-08 62.2 3.6 34 175-208 10-43 (316)
257 1vht_A Dephospho-COA kinase; s 96.5 0.0017 5.7E-08 58.0 4.0 30 175-205 4-33 (218)
258 2qt1_A Nicotinamide riboside k 96.5 0.0012 4.2E-08 58.4 3.0 31 173-203 19-50 (207)
259 2h92_A Cytidylate kinase; ross 96.5 0.002 6.7E-08 57.5 4.4 31 175-205 3-33 (219)
260 1w4r_A Thymidine kinase; type 96.5 0.0067 2.3E-07 53.6 7.6 33 175-207 20-55 (195)
261 1wb9_A DNA mismatch repair pro 96.5 0.013 4.4E-07 62.8 11.3 24 174-197 606-629 (800)
262 1m7g_A Adenylylsulfate kinase; 96.5 0.0015 5E-08 58.2 3.4 39 173-211 23-65 (211)
263 1q3t_A Cytidylate kinase; nucl 96.5 0.0021 7E-08 58.4 4.4 32 173-204 14-45 (236)
264 2px0_A Flagellar biosynthesis 96.5 0.017 6E-07 54.4 11.0 35 174-208 104-142 (296)
265 3tr0_A Guanylate kinase, GMP k 96.4 0.0018 6.1E-08 56.9 3.8 27 173-199 5-31 (205)
266 3exa_A TRNA delta(2)-isopenten 96.4 0.0051 1.7E-07 58.5 6.9 32 176-207 4-35 (322)
267 1ex7_A Guanylate kinase; subst 96.4 0.0023 8E-08 56.2 4.3 27 176-202 2-28 (186)
268 4b3f_X DNA-binding protein smu 96.4 0.012 4.3E-07 61.5 10.5 50 144-208 189-241 (646)
269 3zvl_A Bifunctional polynucleo 96.4 0.0031 1.1E-07 62.5 5.6 31 174-204 257-287 (416)
270 3c8u_A Fructokinase; YP_612366 96.4 0.0027 9.1E-08 56.4 4.6 28 173-200 20-47 (208)
271 1t6n_A Probable ATP-dependent 96.3 0.043 1.5E-06 48.5 12.4 57 138-197 14-73 (220)
272 4a82_A Cystic fibrosis transme 96.3 0.011 3.6E-07 61.2 9.4 29 171-199 363-391 (578)
273 1lvg_A Guanylate kinase, GMP k 96.3 0.002 7E-08 56.9 3.5 26 174-199 3-28 (198)
274 1rz3_A Hypothetical protein rb 96.3 0.0069 2.3E-07 53.4 6.9 36 173-208 20-58 (201)
275 2yhs_A FTSY, cell division pro 96.3 0.022 7.6E-07 57.4 11.3 28 172-199 290-317 (503)
276 1htw_A HI0065; nucleotide-bind 96.3 0.0023 8E-08 54.7 3.7 29 171-199 29-57 (158)
277 1xx6_A Thymidine kinase; NESG, 96.3 0.0051 1.7E-07 54.3 5.9 70 175-246 8-93 (191)
278 1z6g_A Guanylate kinase; struc 96.3 0.0023 7.9E-08 57.5 3.7 29 171-199 19-47 (218)
279 3b5x_A Lipid A export ATP-bind 96.3 0.016 5.4E-07 59.9 10.5 29 171-199 365-393 (582)
280 4f4c_A Multidrug resistance pr 96.3 0.013 4.4E-07 66.4 10.5 30 171-200 440-469 (1321)
281 2bdt_A BH3686; alpha-beta prot 96.3 0.0026 8.9E-08 55.3 3.9 34 177-211 4-37 (189)
282 1ltq_A Polynucleotide kinase; 96.3 0.0019 6.6E-08 60.6 3.2 29 176-204 3-32 (301)
283 3a00_A Guanylate kinase, GMP k 96.2 0.0026 9E-08 55.4 3.6 25 176-200 2-26 (186)
284 3d3q_A TRNA delta(2)-isopenten 96.2 0.0022 7.5E-08 61.7 3.3 32 176-207 8-39 (340)
285 4a1f_A DNAB helicase, replicat 96.2 0.016 5.6E-07 55.6 9.3 38 171-208 42-82 (338)
286 1w36_D RECD, exodeoxyribonucle 96.2 0.0061 2.1E-07 63.4 6.8 24 176-199 165-188 (608)
287 2oap_1 GSPE-2, type II secreti 96.2 0.0015 5.2E-08 66.5 2.1 71 174-244 259-343 (511)
288 3asz_A Uridine kinase; cytidin 96.2 0.0023 7.8E-08 56.7 2.8 27 174-200 5-31 (211)
289 3b60_A Lipid A export ATP-bind 96.2 0.016 5.5E-07 59.9 9.6 29 171-199 365-393 (582)
290 3ney_A 55 kDa erythrocyte memb 96.1 0.0047 1.6E-07 54.8 4.8 28 173-200 17-44 (197)
291 3j16_B RLI1P; ribosome recycli 96.1 0.011 3.9E-07 61.3 8.4 27 173-199 101-127 (608)
292 2f6r_A COA synthase, bifunctio 96.1 0.003 1E-07 59.1 3.6 34 175-211 75-108 (281)
293 2v9p_A Replication protein E1; 96.1 0.0033 1.1E-07 59.6 3.9 31 170-200 121-151 (305)
294 3fdi_A Uncharacterized protein 96.1 0.0035 1.2E-07 55.7 3.8 28 177-204 8-35 (201)
295 2qmh_A HPR kinase/phosphorylas 96.1 0.0028 9.6E-08 56.3 3.1 29 175-204 34-62 (205)
296 3qf4_A ABC transporter, ATP-bi 96.1 0.012 4.3E-07 60.8 8.5 29 171-199 365-393 (587)
297 1znw_A Guanylate kinase, GMP k 96.1 0.0035 1.2E-07 55.6 3.7 29 172-200 17-45 (207)
298 3qf4_B Uncharacterized ABC tra 96.1 0.025 8.4E-07 58.7 10.5 29 171-199 377-405 (598)
299 2o8b_B DNA mismatch repair pro 96.0 0.025 8.5E-07 62.2 10.8 104 175-291 789-913 (1022)
300 2axn_A 6-phosphofructo-2-kinas 96.0 0.012 4.2E-07 59.9 7.7 37 175-211 35-74 (520)
301 3eph_A TRNA isopentenyltransfe 96.0 0.0029 9.9E-08 62.2 2.8 32 175-206 2-33 (409)
302 1zu4_A FTSY; GTPase, signal re 96.0 0.013 4.3E-07 56.0 7.2 37 172-208 102-141 (320)
303 2va8_A SSO2462, SKI2-type heli 95.9 0.018 6.2E-07 60.8 8.9 59 137-195 7-66 (715)
304 2jeo_A Uridine-cytidine kinase 95.9 0.004 1.4E-07 56.8 3.3 31 172-202 22-52 (245)
305 1s96_A Guanylate kinase, GMP k 95.9 0.0047 1.6E-07 55.6 3.7 29 172-200 13-41 (219)
306 1odf_A YGR205W, hypothetical 3 95.9 0.0025 8.4E-08 60.1 1.8 28 173-200 29-56 (290)
307 1vec_A ATP-dependent RNA helic 95.9 0.034 1.2E-06 48.5 9.2 19 175-193 40-58 (206)
308 3b9q_A Chloroplast SRP recepto 95.9 0.0049 1.7E-07 58.4 3.8 28 172-199 97-124 (302)
309 1ls1_A Signal recognition part 95.8 0.075 2.6E-06 49.9 11.9 73 174-246 97-192 (295)
310 3e70_C DPA, signal recognition 95.8 0.015 5.1E-07 55.7 7.0 27 173-199 127-153 (328)
311 1hv8_A Putative ATP-dependent 95.8 0.033 1.1E-06 52.8 9.5 57 138-197 6-66 (367)
312 2v3c_C SRP54, signal recogniti 95.8 0.017 5.9E-07 57.4 7.7 35 174-208 98-135 (432)
313 2j37_W Signal recognition part 95.8 0.015 5E-07 59.1 7.1 73 174-246 100-195 (504)
314 4f4c_A Multidrug resistance pr 95.8 0.023 7.8E-07 64.4 9.4 29 171-199 1101-1129(1321)
315 1ewq_A DNA mismatch repair pro 95.8 0.033 1.1E-06 59.3 10.0 23 175-197 576-598 (765)
316 3ozx_A RNAse L inhibitor; ATP 95.7 0.041 1.4E-06 56.3 10.3 53 225-290 394-446 (538)
317 3ozx_A RNAse L inhibitor; ATP 95.7 0.025 8.6E-07 57.8 8.6 47 229-290 151-197 (538)
318 3lnc_A Guanylate kinase, GMP k 95.7 0.003 1E-07 56.9 1.5 28 172-199 24-52 (231)
319 3gmt_A Adenylate kinase; ssgci 95.7 0.0066 2.3E-07 55.1 3.7 34 177-212 10-43 (230)
320 2og2_A Putative signal recogni 95.7 0.0059 2E-07 59.3 3.6 28 172-199 154-181 (359)
321 1nrj_B SR-beta, signal recogni 95.7 0.088 3E-06 46.2 11.2 25 175-199 12-36 (218)
322 1p9r_A General secretion pathw 95.7 0.015 5E-07 57.7 6.5 50 137-200 143-192 (418)
323 1x6v_B Bifunctional 3'-phospho 95.6 0.0063 2.2E-07 63.3 3.9 38 174-211 51-91 (630)
324 2zj8_A DNA helicase, putative 95.6 0.034 1.2E-06 58.8 9.6 20 173-192 37-56 (720)
325 4eaq_A DTMP kinase, thymidylat 95.6 0.0073 2.5E-07 54.7 3.6 32 174-205 25-58 (229)
326 2xxa_A Signal recognition part 95.5 0.027 9.4E-07 56.0 7.9 74 173-246 98-195 (433)
327 1gtv_A TMK, thymidylate kinase 95.5 0.0029 1E-07 55.9 0.7 24 177-200 2-25 (214)
328 1c9k_A COBU, adenosylcobinamid 95.5 0.0084 2.9E-07 52.3 3.6 32 178-210 2-33 (180)
329 1j8m_F SRP54, signal recogniti 95.5 0.022 7.5E-07 53.7 6.8 72 175-246 98-192 (297)
330 3hdt_A Putative kinase; struct 95.5 0.008 2.7E-07 54.3 3.6 30 176-205 15-44 (223)
331 3tif_A Uncharacterized ABC tra 95.4 0.0049 1.7E-07 56.1 2.0 29 171-199 27-55 (235)
332 1sky_E F1-ATPase, F1-ATP synth 95.4 0.012 4.1E-07 58.9 5.0 25 175-199 151-175 (473)
333 2j9r_A Thymidine kinase; TK1, 95.4 0.028 9.5E-07 50.4 6.8 31 177-207 30-63 (214)
334 2qm8_A GTPase/ATPase; G protei 95.4 0.031 1.1E-06 53.6 7.7 28 172-199 52-79 (337)
335 3tbk_A RIG-I helicase domain; 95.4 0.14 4.7E-06 51.6 12.8 22 176-197 20-41 (555)
336 3tqf_A HPR(Ser) kinase; transf 95.4 0.0092 3.2E-07 51.7 3.4 24 175-198 16-39 (181)
337 2cbz_A Multidrug resistance-as 95.4 0.0053 1.8E-07 56.0 2.0 29 171-199 27-55 (237)
338 1a7j_A Phosphoribulokinase; tr 95.3 0.0076 2.6E-07 56.7 2.7 37 176-212 6-45 (290)
339 3ice_A Transcription terminati 95.2 0.088 3E-06 51.4 10.1 28 172-199 171-198 (422)
340 3lxw_A GTPase IMAP family memb 95.2 0.044 1.5E-06 49.9 7.7 24 175-198 21-44 (247)
341 3aez_A Pantothenate kinase; tr 95.2 0.0098 3.3E-07 56.6 3.4 28 172-199 87-114 (312)
342 2pcj_A ABC transporter, lipopr 95.2 0.0049 1.7E-07 55.7 1.1 28 172-199 27-54 (224)
343 3vkw_A Replicase large subunit 95.2 0.022 7.6E-07 56.6 5.9 25 174-198 160-184 (446)
344 2iw3_A Elongation factor 3A; a 95.2 0.035 1.2E-06 60.5 7.8 26 172-197 458-483 (986)
345 1b0u_A Histidine permease; ABC 95.2 0.0068 2.3E-07 56.1 2.0 28 172-199 29-56 (262)
346 2ffh_A Protein (FFH); SRP54, s 95.2 0.3 1E-05 48.3 14.0 73 174-246 97-192 (425)
347 3p32_A Probable GTPase RV1496/ 95.1 0.08 2.7E-06 51.0 9.7 25 175-199 79-103 (355)
348 2onk_A Molybdate/tungstate ABC 95.1 0.008 2.7E-07 54.9 2.3 28 171-199 21-48 (240)
349 1bif_A 6-phosphofructo-2-kinas 95.1 0.1 3.5E-06 52.2 10.6 26 175-200 39-64 (469)
350 1np6_A Molybdopterin-guanine d 95.1 0.014 4.8E-07 50.6 3.7 25 175-199 6-30 (174)
351 1sgw_A Putative ABC transporte 95.1 0.0068 2.3E-07 54.4 1.6 28 172-199 32-59 (214)
352 2zu0_C Probable ATP-dependent 95.1 0.0092 3.1E-07 55.4 2.5 28 171-198 42-69 (267)
353 1rj9_A FTSY, signal recognitio 95.0 0.013 4.4E-07 55.5 3.6 26 174-199 101-126 (304)
354 2ghi_A Transport protein; mult 95.0 0.0078 2.7E-07 55.7 2.0 29 171-199 42-70 (260)
355 1mv5_A LMRA, multidrug resista 95.0 0.0067 2.3E-07 55.4 1.5 27 172-198 25-51 (243)
356 2olj_A Amino acid ABC transpor 95.0 0.008 2.7E-07 55.7 2.0 29 171-199 46-74 (263)
357 2orv_A Thymidine kinase; TP4A 95.0 0.083 2.9E-06 47.8 8.6 68 176-246 20-102 (234)
358 2ixe_A Antigen peptide transpo 95.0 0.0081 2.8E-07 55.9 2.0 29 171-199 41-69 (271)
359 1g6h_A High-affinity branched- 95.0 0.0072 2.5E-07 55.8 1.6 47 233-293 170-216 (257)
360 2d2e_A SUFC protein; ABC-ATPas 95.0 0.0084 2.9E-07 55.1 2.0 27 172-198 26-52 (250)
361 2v6i_A RNA helicase; membrane, 94.9 0.12 4.2E-06 51.0 10.6 21 176-196 3-24 (431)
362 1xti_A Probable ATP-dependent 94.9 0.19 6.4E-06 48.1 11.7 55 139-196 9-66 (391)
363 2pze_A Cystic fibrosis transme 94.9 0.0074 2.5E-07 54.7 1.5 28 172-199 31-58 (229)
364 2ged_A SR-beta, signal recogni 94.9 0.03 1E-06 48.2 5.3 27 173-199 46-72 (193)
365 1sq5_A Pantothenate kinase; P- 94.9 0.011 3.7E-07 56.0 2.7 28 173-200 78-105 (308)
366 2ff7_A Alpha-hemolysin translo 94.9 0.0074 2.5E-07 55.4 1.5 28 172-199 32-59 (247)
367 1m8p_A Sulfate adenylyltransfe 94.9 0.013 4.6E-07 60.4 3.5 37 175-211 396-436 (573)
368 3q72_A GTP-binding protein RAD 94.9 0.031 1.1E-06 46.6 5.3 21 177-197 4-24 (166)
369 1ji0_A ABC transporter; ATP bi 94.9 0.0075 2.6E-07 55.0 1.5 28 172-199 29-56 (240)
370 3tqc_A Pantothenate kinase; bi 94.9 0.015 5E-07 55.6 3.4 27 174-200 91-117 (321)
371 2yz2_A Putative ABC transporte 94.9 0.0092 3.1E-07 55.3 2.0 47 233-293 155-201 (266)
372 3pqc_A Probable GTP-binding pr 94.9 0.094 3.2E-06 44.7 8.4 23 176-198 24-46 (195)
373 3g5u_A MCG1178, multidrug resi 94.8 0.041 1.4E-06 62.1 7.6 29 171-199 412-440 (1284)
374 3dkp_A Probable ATP-dependent 94.8 0.067 2.3E-06 48.2 7.7 18 175-192 66-83 (245)
375 1v43_A Sugar-binding transport 94.8 0.011 3.8E-07 57.6 2.5 28 172-199 34-61 (372)
376 1svi_A GTP-binding protein YSX 94.8 0.12 4E-06 44.3 9.0 25 174-198 22-46 (195)
377 3pey_A ATP-dependent RNA helic 94.8 0.1 3.5E-06 49.9 9.4 58 138-195 5-64 (395)
378 3cr8_A Sulfate adenylyltranfer 94.8 0.025 8.7E-07 58.0 5.3 40 173-212 367-410 (552)
379 2p6r_A Afuhel308 helicase; pro 94.8 0.022 7.5E-07 60.1 5.0 21 174-194 39-59 (702)
380 3kta_A Chromosome segregation 94.8 0.017 5.7E-07 49.7 3.4 24 177-200 28-51 (182)
381 2qi9_C Vitamin B12 import ATP- 94.8 0.0086 2.9E-07 55.1 1.5 28 172-199 23-50 (249)
382 2j0s_A ATP-dependent RNA helic 94.8 0.085 2.9E-06 51.1 8.8 56 137-195 36-94 (410)
383 2ocp_A DGK, deoxyguanosine kin 94.8 0.017 5.8E-07 52.3 3.5 26 175-200 2-27 (241)
384 1p5z_B DCK, deoxycytidine kina 94.7 0.0081 2.8E-07 55.3 1.2 27 174-200 23-49 (263)
385 2gza_A Type IV secretion syste 94.7 0.0096 3.3E-07 57.8 1.7 74 172-245 172-263 (361)
386 2ihy_A ABC transporter, ATP-bi 94.7 0.0093 3.2E-07 55.8 1.5 28 172-199 44-71 (279)
387 2nq2_C Hypothetical ABC transp 94.7 0.0092 3.2E-07 54.9 1.5 28 172-199 28-55 (253)
388 3b85_A Phosphate starvation-in 94.6 0.012 4E-07 52.6 2.0 24 175-198 22-45 (208)
389 1xjc_A MOBB protein homolog; s 94.6 0.022 7.6E-07 49.1 3.5 24 176-199 5-28 (169)
390 2gk6_A Regulator of nonsense t 94.5 0.033 1.1E-06 58.0 5.3 37 146-198 182-218 (624)
391 1wp9_A ATP-dependent RNA helic 94.5 0.24 8.1E-06 48.4 11.3 32 177-208 25-60 (494)
392 3gd7_A Fusion complex of cysti 94.4 0.014 4.9E-07 57.2 2.1 28 171-198 43-70 (390)
393 3h1t_A Type I site-specific re 94.4 0.051 1.7E-06 55.9 6.4 24 175-198 198-221 (590)
394 1lw7_A Transcriptional regulat 94.4 0.017 5.8E-07 56.0 2.6 28 175-202 170-197 (365)
395 1oxx_K GLCV, glucose, ABC tran 94.3 0.0099 3.4E-07 57.5 0.9 28 172-199 28-55 (353)
396 4a2p_A RIG-I, retinoic acid in 94.3 0.35 1.2E-05 48.6 12.4 22 176-197 23-44 (556)
397 2bbs_A Cystic fibrosis transme 94.3 0.013 4.4E-07 55.2 1.4 29 171-199 60-88 (290)
398 2fwr_A DNA repair protein RAD2 94.2 0.037 1.3E-06 55.1 4.9 33 177-209 110-142 (472)
399 3tmk_A Thymidylate kinase; pho 94.2 0.049 1.7E-06 48.8 5.1 30 175-204 5-34 (216)
400 2f7s_A C25KG, RAS-related prot 94.1 0.36 1.2E-05 42.1 10.7 22 177-198 27-48 (217)
401 2pjz_A Hypothetical protein ST 94.1 0.017 5.7E-07 53.6 1.8 27 172-199 28-54 (263)
402 2f9l_A RAB11B, member RAS onco 94.1 0.028 9.5E-07 48.9 3.2 22 177-198 7-28 (199)
403 2npi_A Protein CLP1; CLP1-PCF1 94.0 0.024 8.2E-07 56.8 3.0 29 171-199 134-162 (460)
404 3ux8_A Excinuclease ABC, A sub 94.0 0.088 3E-06 55.2 7.5 43 235-291 565-607 (670)
405 1g8f_A Sulfate adenylyltransfe 94.0 0.023 7.9E-07 57.7 2.8 27 175-201 395-421 (511)
406 3sop_A Neuronal-specific septi 94.0 0.024 8.1E-07 52.7 2.7 23 177-199 4-26 (270)
407 3lxx_A GTPase IMAP family memb 94.0 0.23 8E-06 44.4 9.4 23 176-198 30-52 (239)
408 4edh_A DTMP kinase, thymidylat 94.0 0.028 9.7E-07 50.2 3.1 32 175-206 6-40 (213)
409 1oix_A RAS-related protein RAB 93.9 0.027 9.3E-07 48.8 2.9 23 177-199 31-53 (191)
410 3e2i_A Thymidine kinase; Zn-bi 93.9 0.25 8.5E-06 44.2 9.1 22 176-197 29-51 (219)
411 2p67_A LAO/AO transport system 93.9 0.11 3.9E-06 49.6 7.4 27 173-199 54-80 (341)
412 2wsm_A Hydrogenase expression/ 93.9 0.032 1.1E-06 49.3 3.3 45 143-200 11-55 (221)
413 2f1r_A Molybdopterin-guanine d 93.9 0.016 5.6E-07 50.0 1.3 23 177-199 4-26 (171)
414 3l9o_A ATP-dependent RNA helic 93.9 0.11 3.9E-06 57.6 8.3 23 175-197 199-221 (1108)
415 3lv8_A DTMP kinase, thymidylat 93.9 0.032 1.1E-06 50.8 3.2 25 175-199 27-51 (236)
416 3g5u_A MCG1178, multidrug resi 93.8 0.19 6.5E-06 56.7 10.1 28 172-199 1056-1083(1284)
417 4i1u_A Dephospho-COA kinase; s 93.8 0.042 1.4E-06 49.1 3.9 36 176-214 10-45 (210)
418 2xtp_A GTPase IMAP family memb 93.8 0.33 1.1E-05 44.0 10.1 24 175-198 22-45 (260)
419 3def_A T7I23.11 protein; chlor 93.8 0.18 6E-06 46.2 8.2 24 175-198 36-59 (262)
420 3iev_A GTP-binding protein ERA 93.8 0.13 4.6E-06 48.4 7.5 24 175-198 10-33 (308)
421 3v9p_A DTMP kinase, thymidylat 93.7 0.031 1.1E-06 50.5 2.9 25 175-199 25-49 (227)
422 3fmp_B ATP-dependent RNA helic 93.7 0.18 6.3E-06 50.1 8.8 58 137-197 91-154 (479)
423 2dyk_A GTP-binding protein; GT 93.7 0.038 1.3E-06 45.7 3.2 22 177-198 3-24 (161)
424 2dpy_A FLII, flagellum-specifi 93.7 0.054 1.8E-06 53.9 4.8 38 172-209 154-193 (438)
425 1fzq_A ADP-ribosylation factor 93.7 0.11 3.8E-06 44.3 6.3 24 175-198 16-39 (181)
426 2wjy_A Regulator of nonsense t 93.6 0.06 2E-06 57.7 5.3 37 146-198 358-394 (800)
427 3k53_A Ferrous iron transport 93.6 0.095 3.3E-06 48.2 6.0 22 177-198 5-26 (271)
428 2ykg_A Probable ATP-dependent 93.6 0.4 1.4E-05 50.0 11.5 22 176-197 29-50 (696)
429 1z2a_A RAS-related protein RAB 93.6 0.041 1.4E-06 45.8 3.2 22 177-198 7-28 (168)
430 2gks_A Bifunctional SAT/APS ki 93.5 0.12 4E-06 53.0 7.1 37 175-211 372-411 (546)
431 3ux8_A Excinuclease ABC, A sub 93.5 0.15 5.2E-06 53.4 8.2 21 172-192 41-61 (670)
432 1nij_A Hypothetical protein YJ 93.5 0.065 2.2E-06 50.8 4.9 23 177-199 6-28 (318)
433 2qu8_A Putative nucleolar GTP- 93.5 0.3 1E-05 43.2 9.1 23 176-198 30-52 (228)
434 1kao_A RAP2A; GTP-binding prot 93.5 0.044 1.5E-06 45.3 3.2 22 177-198 5-26 (167)
435 3dz8_A RAS-related protein RAB 93.4 0.4 1.4E-05 40.9 9.5 23 177-199 25-47 (191)
436 1gm5_A RECG; helicase, replica 93.4 0.35 1.2E-05 51.6 10.7 35 174-208 388-425 (780)
437 2qtf_A Protein HFLX, GTP-bindi 93.4 0.15 5.1E-06 49.4 7.2 22 177-198 181-202 (364)
438 2qag_B Septin-6, protein NEDD5 93.4 0.039 1.3E-06 54.6 3.1 27 172-198 37-65 (427)
439 2hf9_A Probable hydrogenase ni 93.4 0.072 2.5E-06 47.1 4.6 25 175-199 38-62 (226)
440 3ld9_A DTMP kinase, thymidylat 93.3 0.045 1.5E-06 49.4 3.2 27 175-201 21-47 (223)
441 2zej_A Dardarin, leucine-rich 93.3 0.037 1.3E-06 47.5 2.6 21 177-197 4-24 (184)
442 2ce2_X GTPase HRAS; signaling 93.3 0.041 1.4E-06 45.4 2.8 22 177-198 5-26 (166)
443 2wji_A Ferrous iron transport 93.3 0.044 1.5E-06 46.0 3.0 21 177-197 5-25 (165)
444 2obl_A ESCN; ATPase, hydrolase 93.3 0.056 1.9E-06 52.1 4.0 30 173-202 69-98 (347)
445 1ek0_A Protein (GTP-binding pr 93.3 0.048 1.6E-06 45.3 3.2 22 177-198 5-26 (170)
446 1u8z_A RAS-related protein RAL 93.3 0.048 1.6E-06 45.1 3.2 23 176-198 5-27 (168)
447 2vp4_A Deoxynucleoside kinase; 93.2 0.029 1E-06 50.4 1.9 25 174-198 19-43 (230)
448 3o8b_A HCV NS3 protease/helica 93.2 0.41 1.4E-05 50.0 10.7 35 174-208 231-265 (666)
449 2lkc_A Translation initiation 93.2 0.054 1.8E-06 45.6 3.4 24 174-197 7-30 (178)
450 1z0j_A RAB-22, RAS-related pro 93.2 0.05 1.7E-06 45.3 3.2 22 177-198 8-29 (170)
451 1f2t_A RAD50 ABC-ATPase; DNA d 93.2 0.045 1.6E-06 45.9 2.9 24 176-199 24-47 (149)
452 1pui_A ENGB, probable GTP-bind 93.2 0.021 7.2E-07 49.9 0.8 28 171-198 22-49 (210)
453 1wms_A RAB-9, RAB9, RAS-relate 93.2 0.052 1.8E-06 45.7 3.2 22 177-198 9-30 (177)
454 1z08_A RAS-related protein RAB 93.1 0.052 1.8E-06 45.2 3.2 23 176-198 7-29 (170)
455 2nzj_A GTP-binding protein REM 93.1 0.051 1.7E-06 45.6 3.1 22 177-198 6-27 (175)
456 1ky3_A GTP-binding protein YPT 93.1 0.054 1.8E-06 45.7 3.2 23 176-198 9-31 (182)
457 4dcu_A GTP-binding protein ENG 93.1 0.23 8E-06 49.4 8.3 21 177-197 25-45 (456)
458 1ko7_A HPR kinase/phosphatase; 93.0 0.05 1.7E-06 51.6 3.2 24 175-198 144-167 (314)
459 2erx_A GTP-binding protein DI- 93.0 0.05 1.7E-06 45.3 2.9 21 177-197 5-25 (172)
460 4ag6_A VIRB4 ATPase, type IV s 93.0 0.098 3.3E-06 50.9 5.4 34 174-207 34-70 (392)
461 1upt_A ARL1, ADP-ribosylation 93.0 0.058 2E-06 45.0 3.3 24 175-198 7-30 (171)
462 4tmk_A Protein (thymidylate ki 93.0 0.056 1.9E-06 48.3 3.3 25 175-199 3-27 (213)
463 2wjg_A FEOB, ferrous iron tran 93.0 0.049 1.7E-06 46.5 2.9 22 177-198 9-30 (188)
464 1g16_A RAS-related protein SEC 92.9 0.051 1.7E-06 45.3 2.8 22 177-198 5-26 (170)
465 1r2q_A RAS-related protein RAB 92.9 0.058 2E-06 44.8 3.2 21 177-197 8-28 (170)
466 1c1y_A RAS-related protein RAP 92.9 0.059 2E-06 44.7 3.2 22 177-198 5-26 (167)
467 2xzl_A ATP-dependent helicase 92.9 0.084 2.9E-06 56.6 5.0 21 177-197 377-397 (802)
468 1r8s_A ADP-ribosylation factor 92.9 0.061 2.1E-06 44.6 3.2 22 177-198 2-23 (164)
469 2p5s_A RAS and EF-hand domain 92.8 0.054 1.8E-06 47.0 2.9 24 175-198 28-51 (199)
470 2hxs_A RAB-26, RAS-related pro 92.8 0.062 2.1E-06 45.3 3.2 23 176-198 7-29 (178)
471 3bc1_A RAS-related protein RAB 92.8 0.061 2.1E-06 45.8 3.2 23 176-198 12-34 (195)
472 1yks_A Genome polyprotein [con 92.8 0.63 2.2E-05 46.0 11.0 20 173-192 6-25 (440)
473 3q85_A GTP-binding protein REM 92.7 0.06 2.1E-06 44.9 3.0 21 177-197 4-24 (169)
474 2e87_A Hypothetical protein PH 92.7 0.55 1.9E-05 45.0 10.1 25 174-198 166-190 (357)
475 3iby_A Ferrous iron transport 92.7 0.18 6.1E-06 46.2 6.3 22 177-198 3-24 (256)
476 4dsu_A GTPase KRAS, isoform 2B 92.7 0.066 2.3E-06 45.5 3.2 22 177-198 6-27 (189)
477 1z0f_A RAB14, member RAS oncog 92.6 0.067 2.3E-06 44.9 3.2 23 176-198 16-38 (179)
478 3b1v_A Ferrous iron uptake tra 92.6 0.21 7.2E-06 46.2 6.8 22 177-198 5-26 (272)
479 3a1s_A Iron(II) transport prot 92.6 0.21 7.1E-06 45.8 6.7 21 177-197 7-27 (258)
480 2gj8_A MNME, tRNA modification 92.5 0.049 1.7E-06 46.3 2.2 23 176-198 5-27 (172)
481 3con_A GTPase NRAS; structural 92.5 0.069 2.4E-06 45.7 3.2 22 177-198 23-44 (190)
482 3clv_A RAB5 protein, putative; 92.5 0.07 2.4E-06 45.7 3.2 24 175-198 7-30 (208)
483 2atv_A RERG, RAS-like estrogen 92.5 0.067 2.3E-06 46.2 3.1 24 175-198 28-51 (196)
484 2y8e_A RAB-protein 6, GH09086P 92.5 0.062 2.1E-06 45.1 2.8 22 177-198 16-37 (179)
485 2b6h_A ADP-ribosylation factor 92.5 0.067 2.3E-06 46.2 3.1 25 173-197 27-51 (192)
486 2oil_A CATX-8, RAS-related pro 92.5 0.07 2.4E-06 45.8 3.2 22 177-198 27-48 (193)
487 2efe_B Small GTP-binding prote 92.5 0.073 2.5E-06 44.9 3.2 23 176-198 13-35 (181)
488 2a9k_A RAS-related protein RAL 92.5 0.071 2.4E-06 45.1 3.2 23 176-198 19-41 (187)
489 3t1o_A Gliding protein MGLA; G 92.4 0.072 2.5E-06 45.5 3.2 23 177-199 16-38 (198)
490 2fn4_A P23, RAS-related protei 92.4 0.065 2.2E-06 45.1 2.9 22 177-198 11-32 (181)
491 1m7b_A RND3/RHOE small GTP-bin 92.4 0.065 2.2E-06 45.8 2.8 23 176-198 8-30 (184)
492 1knx_A Probable HPR(Ser) kinas 92.4 0.049 1.7E-06 51.6 2.1 28 175-203 147-174 (312)
493 4a2q_A RIG-I, retinoic acid in 92.4 1 3.5E-05 48.0 12.7 23 176-198 264-286 (797)
494 1qhl_A Protein (cell division 92.4 0.024 8.2E-07 51.3 -0.0 22 178-199 30-51 (227)
495 3euj_A Chromosome partition pr 92.3 0.064 2.2E-06 54.0 3.0 27 172-199 27-53 (483)
496 1qde_A EIF4A, translation init 92.3 0.16 5.4E-06 44.8 5.4 59 136-197 12-74 (224)
497 3tw8_B RAS-related protein RAB 92.3 0.071 2.4E-06 44.8 2.9 22 176-197 10-31 (181)
498 3i5x_A ATP-dependent RNA helic 92.3 0.78 2.7E-05 46.5 11.2 18 174-191 110-127 (563)
499 1yqt_A RNAse L inhibitor; ATP- 92.3 0.079 2.7E-06 54.1 3.7 28 172-199 44-71 (538)
500 3kkq_A RAS-related protein M-R 92.2 0.08 2.7E-06 44.9 3.2 23 176-198 19-41 (183)
No 1
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-83 Score=642.71 Aligned_cols=399 Identities=75% Similarity=1.251 Sum_probs=350.6
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHhhhCcccccCCCCCcccccchhhHHhhhhcCCceeeeeeeecCCC---------
Q 015875 1 MQGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPN--------- 71 (399)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (399)
+||+|||+..|+++|++|+.+.++++++||+|++|+|+|||++|++..+.++++.++|+.|++|.+++..+
T Consensus 39 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 118 (467)
T 4b4t_H 39 SYGAAPYAAKLKQTENDLKDIEARIKEKAGVKESDTGLAPSHLWDIMGDRQRLGEEHPLQVARCTKIIKGNGESDETTTD 118 (467)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----------------CCSSSEEEEECCCC----------
T ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCcccccchhchHHhccccchhHhhhHhHhcccccccccccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999998532
Q ss_pred ---------------------CcCCceEEeecccceEEEecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCccccc
Q 015875 72 ---------------------SEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMM 130 (399)
Q Consensus 72 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~ 130 (399)
.++.+++++++++.+|+|.+.+.+++++|++|++|++++.++.+...||+.+||.+..|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m 198 (467)
T 4b4t_H 119 NNNSGNSNSNSNQQSTDADEDDEDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMM 198 (467)
T ss_dssp ----------------------CCCCCEEEETTSCCBCCCCCTTCCSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCC
T ss_pred ccccccccccccccCccccccCCCCcEEEEecCCCeEEEecCCcCCHHHCCCCCEEEEccCcceeeecCCCccCCcccee
Confidence 24578999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccc
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 210 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~ 210 (399)
.+++.|+++|+||+|+++++++|++.|.+|+.+|+.|..+|+++|+|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 199 ~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~ 278 (467)
T 4b4t_H 199 TVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE 278 (467)
T ss_dssp EEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 211 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 211 l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
+.++|+|++++.++.+|..|+..+||||||||+|.++..|.+++.+.+...++.+.++|++++++....+|+||+|||+|
T Consensus 279 L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp 358 (467)
T 4b4t_H 279 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP 358 (467)
T ss_dssp GCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT
T ss_pred hhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCc
Confidence 99999999999999999999999999999999999999998877777888999999999999999999999999999999
Q ss_pred CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCc
Q 015875 291 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTV 370 (399)
Q Consensus 291 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~I 370 (399)
+.||++++||||||+.|+|++|+.++|.+||+.|++++.+..+++++.||..|+||||+||+++|++|++.|+++++..|
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~i 438 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVA 438 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSB
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhccccCCCCccccCC
Q 015875 371 TEKDFLDAVNKVIKGYQKFSATPKYMVYN 399 (399)
Q Consensus 371 t~ed~~~ai~~v~~~~~~~~~~~~~~~~~ 399 (399)
|.+||..|+++++.++++++.+.+|+.||
T Consensus 439 t~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 439 TEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp CHHHHHHHHHHHHHHHCC-----------
T ss_pred CHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 99999999999999999999999999998
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-72 Score=554.11 Aligned_cols=376 Identities=47% Similarity=0.779 Sum_probs=352.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHhhhCcccccCCCCCcccccchhhHHhhhhcCCceeeeeeeecCCCCcCCceEEeecc
Q 015875 4 LGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQ 83 (399)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (399)
+.||.++|+++|.++++..+++++|+.+++ .+ ...++.+++......+.|++||++.+.++. .+++++...
T Consensus 20 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~---~l--~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~----~~~iv~~~~ 90 (405)
T 4b4t_J 20 KPYFEQKIQETELKIRSKTENVRRLEAQRN---AL--NDKVRFIKDELRLLQEPGSYVGEVIKIVSD----KKVLVKVQP 90 (405)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHCCCCCEEEEEEEEECTT----SCEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHhcCCCceEEEEEEEecC----CeEEEEeCC
Confidence 357899999999999999999999988875 12 245666666666667899999999999986 569999999
Q ss_pred cceEEEecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCC
Q 015875 84 IAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLH 163 (399)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~ 163 (399)
+.+|+|.+.+.++...+++|++|++++.++.+...||+..+|.+..+.+.+.|+++|+||+|+++++++|+++|.+|+++
T Consensus 91 ~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~ 170 (405)
T 4b4t_J 91 EGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKH 170 (405)
T ss_dssp SCEEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHC
T ss_pred CCEEEEecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecC
Q 015875 164 PEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEV 243 (399)
Q Consensus 164 ~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEi 243 (399)
|++|.++|+++|+|+|||||||||||++|+|+|++++.+|+.++++++.++|+|++++.++.+|..|+..+|||||||||
T Consensus 171 pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEi 250 (405)
T 4b4t_J 171 PELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEI 250 (405)
T ss_dssp HHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred HHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHH
Q 015875 244 DAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 323 (399)
Q Consensus 244 D~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~ 323 (399)
|+++++|.+++.+++.+.++.+.++|++++++....+|+||+|||+|+.|||+++||||||+.|+|++|+.++|.+||+.
T Consensus 251 Dai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~ 330 (405)
T 4b4t_J 251 DSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRI 330 (405)
T ss_dssp SCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred hhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHH
Confidence 99999998877777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhccc
Q 015875 324 HTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQK 388 (399)
Q Consensus 324 ~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~~~~ 388 (399)
|++++++..+++++.||..|+||||+||.++|++|++.|+++++..||.+||..|+++++....+
T Consensus 331 ~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 331 HSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp HHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHHTC
T ss_pred HhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999876543
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-67 Score=519.07 Aligned_cols=331 Identities=45% Similarity=0.801 Sum_probs=320.1
Q ss_pred cCCceeeeeeeecCCCCcCCceEEeecccceEEEecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCcccccceecC
Q 015875 56 EQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEK 135 (399)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 135 (399)
..|++||++.+.++. .+++|+...+.+|+|.+.+.+++..+++|++|++++.++.+...||+..||.++.|.+++.
T Consensus 101 ~~p~~~g~~~~~~~~----~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~ 176 (437)
T 4b4t_I 101 GNPLSIGTLEEIIDD----DHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKS 176 (437)
T ss_dssp CSSEEEEEEEEECTT----SEEEEECSSSCCCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESS
T ss_pred CCCceeEEEEEEecC----CEEEEEcCCCCEEEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccC
Confidence 689999999999987 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhh
Q 015875 136 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 215 (399)
Q Consensus 136 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~ 215 (399)
|+++|+||+|+++++++|++.+.+|+++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++++++.++|
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~ 256 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKY 256 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSS
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCc
Q 015875 216 VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDP 295 (399)
Q Consensus 216 ~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~ 295 (399)
+|++++.++.+|..|+..+||||||||+|++++.|.+.+.+++.+.++.+.++|++++++....+|+||+|||+|+.|||
T Consensus 257 vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDp 336 (437)
T 4b4t_I 257 LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDP 336 (437)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCT
T ss_pred CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCH
Confidence 99999999999999999999999999999999999887777788999999999999999999999999999999999999
Q ss_pred cccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHH
Q 015875 296 ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDF 375 (399)
Q Consensus 296 al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~ 375 (399)
|++||||||+.|+|++|+.++|.+||+.|++++++..+++++.||..|+||||+||.++|++|++.|+++++..||.+||
T Consensus 337 ALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf 416 (437)
T 4b4t_I 337 ALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDF 416 (437)
T ss_dssp TSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHH
T ss_pred HHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccC
Q 015875 376 LDAVNKVIKGYQKFS 390 (399)
Q Consensus 376 ~~ai~~v~~~~~~~~ 390 (399)
..|+++++++..+..
T Consensus 417 ~~Al~rv~~~~~~e~ 431 (437)
T 4b4t_I 417 KQAKERVMKNKVEEN 431 (437)
T ss_dssp HHHHHHHHHHHCCCS
T ss_pred HHHHHHHhCCCChhh
Confidence 999999987765443
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-66 Score=516.78 Aligned_cols=359 Identities=44% Similarity=0.755 Sum_probs=332.4
Q ss_pred HHHHHHHHHHHHHHHhhhCcccccCCCCCcccccchhhHHhhhhcCCceeeeeeeecCCCCcCCceEEeecccceEEEec
Q 015875 12 KKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGL 91 (399)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (399)
+++|.+++.+..+++.|.-.. .+...++..+ ...|++||++.+.++. ++++|+...+.+|++.+
T Consensus 68 ~~~e~~~~~~~~~~~~l~~~~-----------~~~~~~~~~l-~~~~~~vg~~~~~~~~----~~~iv~~~~g~~~~v~~ 131 (437)
T 4b4t_L 68 RRYDDQLKQRRQNIRDLEKLY-----------DKTENDIKAL-QSIGQLIGEVMKELSE----EKYIVKASSGPRYIVGV 131 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH-HSCCEEEEEEEECSSS----SCEEEEETTSCEEEECB
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHh-ccCCceeeeheeeecC----CcEEEEECCCCEEEEec
Confidence 466777777766666443221 1222333333 3789999999999986 56999999999999999
Q ss_pred CCCCCCCCCCCCceeeecCccceeeccCCCCCCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhC
Q 015875 92 GDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG 171 (399)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g 171 (399)
.+.++...+++|++|+++..++.+...||+..||.+..|.+.+.|+++|+||+|+++++++|++++.+|+++|++|..+|
T Consensus 132 ~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g 211 (437)
T 4b4t_L 132 RNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG 211 (437)
T ss_dssp CSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC
T ss_pred ccccCHhhcCCCceeeEcccchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCcc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARF 251 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~ 251 (399)
+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|..|+..+||||||||+|+++++|.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~ 291 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRF 291 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCS
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC
Q 015875 252 DDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE 331 (399)
Q Consensus 252 ~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~ 331 (399)
+++.+.+....+.+.++|++++++....+++||+|||+|+.|||+++||||||+.|+|++|+.++|.+||+.|++++...
T Consensus 292 ~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~ 371 (437)
T 4b4t_L 292 SEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT 371 (437)
T ss_dssp SSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC
T ss_pred cCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC
Confidence 87777788899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhc
Q 015875 332 RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 332 ~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~~ 386 (399)
.+++++.+|..|+||||+||.++|++|++.|+++++..|+.+||..|++++.+..
T Consensus 372 ~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 372 GEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVK 426 (437)
T ss_dssp SCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999999999987653
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-64 Score=504.70 Aligned_cols=334 Identities=43% Similarity=0.703 Sum_probs=318.3
Q ss_pred hhHHhhhhcCCceeeeeeeecCCCCcCCceEEeecccceEEEecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCcc
Q 015875 48 SDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSV 127 (399)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 127 (399)
++....-...|++||++.+.++. .+++|+...+.+|++++.+.++.+.+++|++|++++.++.+...||+..+|.+
T Consensus 83 ~ee~~~l~~~~~~vg~~~e~~d~----~~~iv~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v 158 (428)
T 4b4t_K 83 QEEVKRIQSVPLVIGQFLEPIDQ----NTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSI 158 (428)
T ss_dssp HHHHHHHTCSCEEEEEEEEEEET----TEEEEEETTSCEEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSS
T ss_pred HHHHHHHcCCCceeeEEEEEccC----CeeEEecCCCCEEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcch
Confidence 33333344799999999999986 56999999999999999999999999999999999999999999999999999
Q ss_pred cccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 128 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 128 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
..|.+++.|+++|+||||+++++++|++.+.+|+++|+.|..+|+++|+|+|||||||||||++|+++|++++.+|+.++
T Consensus 159 ~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 159 SVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp CCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred hhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 015875 208 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 287 (399)
Q Consensus 208 ~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 287 (399)
++++.++|+|++++.++.+|..|+..+||||||||+|++++.|.+...+++.+.++.+.+||++++++....+++||+||
T Consensus 239 ~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aT 318 (428)
T 4b4t_K 239 GSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMAT 318 (428)
T ss_dssp GGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEE
T ss_pred cchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 99999999999999999999999999999999999999999998877777888999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCceeEEEec-CCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHc
Q 015875 288 NRPDTLDPALLRPGRLDRKVEFG-LPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR 366 (399)
Q Consensus 288 n~~~~ld~al~r~gRf~~~i~~~-~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~ 366 (399)
|+|+.|||+++||||||+.|+|| +|+.++|..||+.+++++++..+++++.||..|+||||+||.++|++|++.|++++
T Consensus 319 N~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~ 398 (428)
T 4b4t_K 319 NRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 398 (428)
T ss_dssp SCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999997 89999999999999999999889999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHhh
Q 015875 367 RKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 367 ~~~It~ed~~~ai~~v~~~ 385 (399)
+..|+.+||.+|+.++++.
T Consensus 399 ~~~i~~~d~~~A~~~~~~~ 417 (428)
T 4b4t_K 399 RYVILQSDLEEAYATQVKT 417 (428)
T ss_dssp CSSBCHHHHHHHHHHHSCS
T ss_pred CCCCCHHHHHHHHHHhhCc
Confidence 9999999999999887643
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-64 Score=505.42 Aligned_cols=338 Identities=45% Similarity=0.745 Sum_probs=316.1
Q ss_pred hHHhhhhcCCceeeeeeeecCCCC----------------------cCCceEEeecccceEEEecCCCCCCCCCCCCcee
Q 015875 49 DKQMMQEEQPLQVARCTKIISPNS----------------------EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRV 106 (399)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 106 (399)
+........|++||++.+.++.+. ....++++...+..|++.....+++..+++|++|
T Consensus 67 ~~i~~~~~~p~~v~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v 146 (434)
T 4b4t_M 67 EKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLV 146 (434)
T ss_dssp HHHHHHCSSSCCEEEECCC---------------------------CCSEEEEEETTSCEEEEECCSSSCTTTSCSSEEE
T ss_pred HHHHhccCCcchhhhhhhhhccchhhhhccchhhhhhhhhhhhhcccCceEEEEcCCCCeEEEecccccCHhHCCCCCEE
Confidence 334444578999999999876431 1235788888999999999999999999999999
Q ss_pred eecCccceeeccCCCCCCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCC
Q 015875 107 GVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGT 186 (399)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGt 186 (399)
+++..++.+...||++.||.+..|.+++.|+++|+||+|+++++++|++.+.+|+++|+.|.++|+++|+|+||||||||
T Consensus 147 ~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGT 226 (434)
T 4b4t_M 147 GVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGT 226 (434)
T ss_dssp EECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTS
T ss_pred eEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHH
Q 015875 187 GKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML 266 (399)
Q Consensus 187 GKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~ 266 (399)
|||++|+|+|++++.+|+.++++++.++|+|++++.++.+|..|+..+||||||||+|.++++|.+...+++...++++.
T Consensus 227 GKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~ 306 (434)
T 4b4t_M 227 GKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTML 306 (434)
T ss_dssp SHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877777888999999
Q ss_pred HHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCC
Q 015875 267 EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS 346 (399)
Q Consensus 267 ~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~ 346 (399)
++|++++++....+|+||+|||+|+.|||+++||||||+.|+|++|+.++|.+||+.|++++.+..+++++.||..|+||
T Consensus 307 ~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~ 386 (434)
T 4b4t_M 307 ELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEF 386 (434)
T ss_dssp HHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSC
T ss_pred HHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCC
Confidence 99999999999899999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhc
Q 015875 347 TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 347 sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~~ 386 (399)
||+||.++|++|++.|+++++..|+.+||.+|++++.++.
T Consensus 387 sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 387 NGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARK 426 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSSC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999886654
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7.9e-48 Score=410.01 Aligned_cols=263 Identities=40% Similarity=0.720 Sum_probs=201.4
Q ss_pred CCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCce
Q 015875 124 DPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF 203 (399)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~ 203 (399)
.|+.......+.|+++|++|+|+++++++|++.+.+|+++|+.|.++|+.+++++|||||||||||++|+++|++++.+|
T Consensus 460 ~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f 539 (806)
T 3cf2_A 460 NPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE
T ss_pred CCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce
Confidence 34444445567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 015875 204 IRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 283 (399)
Q Consensus 204 i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v 283 (399)
+.+++++++++|+|++++.++.+|..|+..+||||||||||++++.|..+..+++....+.+.+||.+|+++....+|+|
T Consensus 540 ~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~v 619 (806)
T 3cf2_A 540 ISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 619 (806)
T ss_dssp EECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEE
T ss_pred EEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 99999999999999999999999999999999999999999999998655444445567888999999999998899999
Q ss_pred EEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHH
Q 015875 284 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAI 363 (399)
Q Consensus 284 I~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~ 363 (399)
|+|||+|+.||++++|||||++.|+|++|+.++|.+||+.+++++.+..+++++.||..|+||||+||.++|++|.+.|+
T Consensus 620 i~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~ 699 (806)
T 3cf2_A 620 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp ECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHH
T ss_pred EEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999998
Q ss_pred HHcC-------------------------CCccHHHHHHHHHHHHhhc
Q 015875 364 RARR-------------------------KTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 364 ~~~~-------------------------~~It~ed~~~ai~~v~~~~ 386 (399)
++.- ..|+.+||.+|++++.++.
T Consensus 700 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSv 747 (806)
T 3cf2_A 700 RESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp HHHHC-----------------------CCC----CCTTTC-------
T ss_pred HHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCC
Confidence 8631 2589999999999987654
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=9.8e-45 Score=386.25 Aligned_cols=251 Identities=41% Similarity=0.727 Sum_probs=231.2
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
...|.++|+||+|+++++++|++.+.+|+++|++|..+|+.+|+|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCC
Q 015875 213 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 292 (399)
Q Consensus 213 ~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ 292 (399)
+++.|+++..++.+|..|+..+||||||||||.++++|.+.+. ....+.+.+|+..++++..+.+|+||+|||+++.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~---~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC---TTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCC---hHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 9999999999999999999999999999999999998865432 2335667778888888888889999999999999
Q ss_pred CCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHc------
Q 015875 293 LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR------ 366 (399)
Q Consensus 293 ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~------ 366 (399)
||++++|||||++.|++++|+.++|.+||+.+++++....++++..+|..|+||+|+||.++|++|.+.|+++.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999998899999999999999999999999999999998763
Q ss_pred -----------CCCccHHHHHHHHHHHHhhc
Q 015875 367 -----------RKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 367 -----------~~~It~ed~~~ai~~v~~~~ 386 (399)
...|+.+||..|+..+.+..
T Consensus 433 ~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp TCCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred cccccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 13488899999998876543
No 9
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.2e-40 Score=317.31 Aligned_cols=261 Identities=54% Similarity=0.947 Sum_probs=244.8
Q ss_pred ccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEec
Q 015875 129 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 208 (399)
Q Consensus 129 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~ 208 (399)
.+.+...|+.+|++|+|+++++++|++.+..++.+++.|..+|+.++.++||+||||||||++|+++|+.++.+++.+++
T Consensus 5 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 5 AMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CEEEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred cccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 45567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 209 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 209 s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
+++...+.|.....++.+|..+....|+||||||+|.+..++.+...+++.+.+..+..+++.++++....+++||+|||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999988776666667889999999999999887788999999999
Q ss_pred CCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCC
Q 015875 289 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRK 368 (399)
Q Consensus 289 ~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~ 368 (399)
.++.++++++|++||+..+.++.|+.++|.+|++.+++......+.++..++..+.|+++++++.+|+.|...|.++++.
T Consensus 165 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~ 244 (285)
T 3h4m_A 165 RPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRD 244 (285)
T ss_dssp CGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhcccc
Q 015875 369 TVTEKDFLDAVNKVIKGYQKF 389 (399)
Q Consensus 369 ~It~ed~~~ai~~v~~~~~~~ 389 (399)
.|+.+||.+|+.++.......
T Consensus 245 ~I~~~d~~~al~~~~~~~~~~ 265 (285)
T 3h4m_A 245 YVTMDDFRKAVEKIMEKKKVK 265 (285)
T ss_dssp SBCHHHHHHHHHHHHHHHCCC
T ss_pred cCCHHHHHHHHHHHHhccccc
Confidence 999999999999998765433
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.2e-41 Score=324.93 Aligned_cols=254 Identities=41% Similarity=0.735 Sum_probs=223.5
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
+.+.|+++|++|+|+++++++|++++..|+.+|+.|..+|+.+++++|||||||||||++|+++|++++.+|+.++++++
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 212 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 212 ~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
...+.|+....++.+|..+....|++|||||+|.+...+............+.+.+++..++++....+++||+|||+++
T Consensus 86 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 86 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 165 (301)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred HhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999999876543221111112234455666666666677899999999999
Q ss_pred CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHc-----
Q 015875 292 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR----- 366 (399)
Q Consensus 292 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~----- 366 (399)
.++++++|+|||+..+++++|+.++|.+|++.+++..+...+++++.++..+.||+|+||+++|++|.+.|.++.
T Consensus 166 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~ 245 (301)
T 3cf0_A 166 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 245 (301)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999998887788999999999999999999999999999887542
Q ss_pred --------------------CCCccHHHHHHHHHHHHhh
Q 015875 367 --------------------RKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 367 --------------------~~~It~ed~~~ai~~v~~~ 385 (399)
...|+.+||..|++++.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 246 RRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp --------------------CCCBCHHHHHHHHTTCCCS
T ss_pred hhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 1359999999999887543
No 11
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=5e-40 Score=333.49 Aligned_cols=251 Identities=46% Similarity=0.800 Sum_probs=226.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 214 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~ 214 (399)
.+.++|+||+|++++++++++.+.. +.+++.|..+|...|+++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5778999999999999999999875 778999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 015875 215 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 294 (399)
Q Consensus 215 ~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 294 (399)
+.|.+...++.+|..+....|+||||||+|.++.++.....+++.+..+.+.+++..++++....+++||++||+++.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99999999999999999999999999999999988765444556677788889999998877777899999999999999
Q ss_pred ccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHH
Q 015875 295 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 374 (399)
Q Consensus 295 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed 374 (399)
++++|||||++.+.+++|+.++|.+|++.+++...+..++++..++..++|++|+||.++|++|...|.+++...|+.+|
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~d 248 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKD 248 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHH
Confidence 99999999999999999999999999999999888888889999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHhhc
Q 015875 375 FLDAVNKVIKGY 386 (399)
Q Consensus 375 ~~~ai~~v~~~~ 386 (399)
|..|+.++..+.
T Consensus 249 l~~al~~v~~~~ 260 (476)
T 2ce7_A 249 FEEAIDRVIAGP 260 (476)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHhcCc
Confidence 999999987543
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.9e-39 Score=304.92 Aligned_cols=255 Identities=44% Similarity=0.769 Sum_probs=227.8
Q ss_pred cceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEecc
Q 015875 130 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 209 (399)
Q Consensus 130 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s 209 (399)
++.+..++.+|++|+|++++++++++.+.. +.+++.|..+|...+++++|+||||||||++|+++|+.++.+++.++++
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~ 79 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGS 79 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSC
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHH
Confidence 356678899999999999999999998876 7888899999999999999999999999999999999999999999999
Q ss_pred chhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 210 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 210 ~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
++...+.|.....++.+|+.+....|+++||||+|.+...+.....++..+....+.+++..++++....+++||++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 159 (257)
T 1lv7_A 80 DFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR 159 (257)
T ss_dssp SSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCC
Confidence 99999999999999999999998899999999999998876544334455566778888888888877788999999999
Q ss_pred CCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCC
Q 015875 290 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKT 369 (399)
Q Consensus 290 ~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~ 369 (399)
++.++++++|++||++.+.+++|+.++|.+|++.+++...+..+.++..++..++||+++||.++|++|...|.+++...
T Consensus 160 ~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~ 239 (257)
T 1lv7_A 160 PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRV 239 (257)
T ss_dssp TTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred chhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999998888888889999999999999999999999999999998899
Q ss_pred ccHHHHHHHHHHHHhh
Q 015875 370 VTEKDFLDAVNKVIKG 385 (399)
Q Consensus 370 It~ed~~~ai~~v~~~ 385 (399)
|+.+||.+|++.+..+
T Consensus 240 i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 240 VSMVEFEKAKDKIMMG 255 (257)
T ss_dssp BCHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHhcC
Confidence 9999999999988654
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=315.05 Aligned_cols=250 Identities=40% Similarity=0.674 Sum_probs=210.9
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh
Q 015875 134 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 213 (399)
Q Consensus 134 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~ 213 (399)
..|+++|+||+|+++++++|++.+.+|+.+++.|..+++..++|++|+||||||||+|++++|..++..++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 015875 214 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 293 (399)
Q Consensus 214 ~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 293 (399)
.+.|+..+.++.+|+.++...|+++|+||+|.++..+..... ....+.+.+++.++++......++++++||+|+.+
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET---GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc---hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 899999999999999998889999999999999876533211 12234567788889988777889999999999999
Q ss_pred CccccCCCCceeEEEecCCCHHHHHHHHHHHHhc---cCCCCcccHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHHc--
Q 015875 294 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT---MNCERDIRFELLARLC--PNSTGADIRSVCTEAGMFAIRAR-- 366 (399)
Q Consensus 294 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~---~~~~~~~~~~~la~~~--~g~sg~di~~l~~~A~~~A~~~~-- 366 (399)
|++++|||||++.|++++|+.++|.+||+.+++. .....+++++.++..+ +||+|+||.++|++|.+.|+++.
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999854 3345688999999875 59999999999999999998752
Q ss_pred ---------CCCccHHHHHHHHHHHHhhc
Q 015875 367 ---------RKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 367 ---------~~~It~ed~~~ai~~v~~~~ 386 (399)
...|+.+||.+|++++.++.
T Consensus 240 ~~~~~~~~~~~~i~~~df~~al~~~~ps~ 268 (274)
T 2x8a_A 240 RQKSGNEKGELKVSHKHFEEAFKKVRSSI 268 (274)
T ss_dssp ----------CCBCHHHHHHHHTTCCCCC
T ss_pred hccccccccCCeecHHHHHHHHHHhcCCC
Confidence 34699999999999886654
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.8e-39 Score=311.15 Aligned_cols=228 Identities=36% Similarity=0.634 Sum_probs=205.9
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-CCceEEEeccc
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-DACFIRVIGSE 210 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-~~~~i~v~~s~ 210 (399)
+.+.|+++|+||+|++++++.|++.+.+|+++|+.|.. +..+++++|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 34678999999999999999999999999999999985 46788999999999999999999999999 89999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEecCC
Q 015875 211 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLMATNR 289 (399)
Q Consensus 211 l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~v~vI~atn~ 289 (399)
+..++.|+.+..++.+|..++...|+||||||||.+++.+.... .....+.+.+++..++++. ...+++||+|||+
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC---TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc---chHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 99999999999999999999999999999999999988775432 3345566778888888875 3678999999999
Q ss_pred CCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH
Q 015875 290 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 365 (399)
Q Consensus 290 ~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~ 365 (399)
++.+|++++| ||+..+.+++|+.++|.+|++.+++..... .+.+++.|+..+.||+|+||..+|++|.+.|+++
T Consensus 159 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 159 PWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999877653 5678899999999999999999999999998875
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=6e-39 Score=311.83 Aligned_cols=251 Identities=37% Similarity=0.617 Sum_probs=217.2
Q ss_pred cceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEecc
Q 015875 130 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 209 (399)
Q Consensus 130 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s 209 (399)
.++.+.|+++|++|+|++++++.|++.+..|+.+|+.|.. +..+++++|||||||||||++|+++|++++.+|+.++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 3467789999999999999999999999999999999987 567889999999999999999999999999999999999
Q ss_pred chhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEecC
Q 015875 210 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLMATN 288 (399)
Q Consensus 210 ~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~v~vI~atn 288 (399)
++..++.|+.+..++.+|..++...|+||||||||.+...+.+........++ .+++..++++. ...+++||+|||
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~---~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHH---HHHHHHHGGGGTSCCCEEEEEEES
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHH---HHHHHHhccccccCCceEEEEecC
Confidence 99999999999999999999999999999999999998877554433344444 44555555542 456899999999
Q ss_pred CCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcC
Q 015875 289 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARR 367 (399)
Q Consensus 289 ~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~ 367 (399)
+++.++++++| ||+..+.+++|+.++|.+||+.+++..... .+.+++.|+..+.||+|+||..+|++|.+.|+++..
T Consensus 163 ~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 163 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp CGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred ChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999999887654 567789999999999999999999999999987641
Q ss_pred -------------------------------------------CCccHHHHHHHHHHHHhhc
Q 015875 368 -------------------------------------------KTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 368 -------------------------------------------~~It~ed~~~ai~~v~~~~ 386 (399)
..||.+||.+|++.+.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 241 SATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp HCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSS
T ss_pred hhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCC
Confidence 3499999999999876543
No 16
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=4.9e-38 Score=295.03 Aligned_cols=253 Identities=40% Similarity=0.679 Sum_probs=202.8
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhh
Q 015875 136 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 215 (399)
Q Consensus 136 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~ 215 (399)
|+++|++|+|++++++.+++.+.. +.+++.|..+|..+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 568899999999999999999876 7888999999999999999999999999999999999999999999999999888
Q ss_pred hchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCC-CChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 015875 216 VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 294 (399)
Q Consensus 216 ~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~-~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 294 (399)
.+.....++.+|..+....|++|||||+|.+...+.....+ .+.+.+..+..+++.+++.....++++|++||.++.++
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 89999999999999998899999999999998766432211 23456678888999888877777899999999999999
Q ss_pred ccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcc--cHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccH
Q 015875 295 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDI--RFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTE 372 (399)
Q Consensus 295 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~--~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ 372 (399)
++++|+|||+..+++++|+.++|.+|++.+++..+..... ....++..+.|+++++|..+|++|...|.+++...|+.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~ 239 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHT 239 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCB
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 9999999999999999999999999999999887765443 34789999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHhhcccc
Q 015875 373 KDFLDAVNKVIKGYQKF 389 (399)
Q Consensus 373 ed~~~ai~~v~~~~~~~ 389 (399)
+||..|+.++..+..+.
T Consensus 240 ~d~~~a~~~~~~~~~~~ 256 (262)
T 2qz4_A 240 LNFEYAVERVLAGTAKK 256 (262)
T ss_dssp CCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccChhhh
Confidence 99999999998766443
No 17
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.1e-37 Score=317.89 Aligned_cols=252 Identities=44% Similarity=0.755 Sum_probs=230.8
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhh
Q 015875 136 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 215 (399)
Q Consensus 136 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~ 215 (399)
++++|+||+|+++++.++++.+.. +.++..|..+++..|+++||+||||||||+||+++|+.++.+|+.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 789999999999999999999875 6788999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCc
Q 015875 216 VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDP 295 (399)
Q Consensus 216 ~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~ 295 (399)
.|.....++.+|+.+....|+++||||||.++..+.....++..+..+.+.+++.+++++.....+++|++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99998999999999888889999999999998776543333466778889999999998877778999999999999999
Q ss_pred cccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHH
Q 015875 296 ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDF 375 (399)
Q Consensus 296 al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~ 375 (399)
+++|||||++.+.+++|+.++|.+||+.+++...+..++++..++..++|++|+||.++|++|...|.+++...|+.+||
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl 264 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDL 264 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Confidence 99999999999999999999999999999988888888899999999999999999999999999998888889999999
Q ss_pred HHHHHHHHhhccc
Q 015875 376 LDAVNKVIKGYQK 388 (399)
Q Consensus 376 ~~ai~~v~~~~~~ 388 (399)
..|+.++..+..+
T Consensus 265 ~~al~~v~~~~~~ 277 (499)
T 2dhr_A 265 EEAADRVMMLPAK 277 (499)
T ss_dssp HHHHHHHTTCSSS
T ss_pred HHHHHHHhccccc
Confidence 9999999876543
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=6.2e-38 Score=308.74 Aligned_cols=252 Identities=37% Similarity=0.597 Sum_probs=208.2
Q ss_pred ccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEec
Q 015875 129 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 208 (399)
Q Consensus 129 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~ 208 (399)
.......|+++|++|+|++.+++.|++.+.+|+.+|+.|.. +..+++++|||||||||||++|+++|++++.+|+.+++
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 44556788999999999999999999999999999999987 66888999999999999999999999999999999999
Q ss_pred cchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEec
Q 015875 209 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLMAT 287 (399)
Q Consensus 209 s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~v~vI~at 287 (399)
+++...+.|+.+..++.+|..++...|+||||||+|.+...+.... .....+...+++..++++. ...+++||++|
T Consensus 118 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~v~vI~at 194 (355)
T 2qp9_X 118 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE---SEASRRIKTELLVQMNGVGNDSQGVLVLGAT 194 (355)
T ss_dssp HHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEE
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc---chHHHHHHHHHHHHhhcccccCCCeEEEeec
Confidence 9999999999999999999999999999999999999988764432 2233444555666666553 35679999999
Q ss_pred CCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHc
Q 015875 288 NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR 366 (399)
Q Consensus 288 n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~ 366 (399)
|+++.++++++| ||+..+.+++|+.++|.+||+.+++..... .+.+++.|+..+.||+|+||..+|++|.+.|+++.
T Consensus 195 n~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 195 NIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 272 (355)
T ss_dssp SCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999887653 56788999999999999999999999999998762
Q ss_pred -------------------------------------------CCCccHHHHHHHHHHHHhhc
Q 015875 367 -------------------------------------------RKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 367 -------------------------------------------~~~It~ed~~~ai~~v~~~~ 386 (399)
...|+.+||..|+..+.+..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~ 335 (355)
T 2qp9_X 273 QSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 335 (355)
T ss_dssp HHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSS
T ss_pred HHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCC
Confidence 12499999999999886543
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.2e-37 Score=316.12 Aligned_cols=249 Identities=41% Similarity=0.727 Sum_probs=223.5
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 214 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~ 214 (399)
.++.+|++|+|+++++++|++.+..++.+|+.|..+|+.++.++|||||||||||++|+++|++++.+|+.++|+++...
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 015875 215 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 294 (399)
Q Consensus 215 ~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 294 (399)
+.|+....++.+|..+....|++|||||||.+.+++..........++..|+. .+++.....+++||+|||+++.++
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~---~ld~~~~~~~v~vIaaTn~~~~Ld 354 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLT---LMDGLKQRAHVIVMAATNRPNSID 354 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHH---HHHHSCTTSCEEEEEEESCGGGBC
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHH---HhhccccCCceEEEEecCCccccC
Confidence 99999999999999999999999999999999887654332222344444444 444455677899999999999999
Q ss_pred ccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCC------
Q 015875 295 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRK------ 368 (399)
Q Consensus 295 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~------ 368 (399)
++++|+|||+..++|++|+.++|.+||+.+++.+.+..+.++..++..+.|++++++..+|++|.+.|.++...
T Consensus 355 ~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~ 434 (489)
T 3hu3_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (489)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTC
T ss_pred HHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999988888889999999999999999999999999999887533
Q ss_pred -----------CccHHHHHHHHHHHHhhc
Q 015875 369 -----------TVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 369 -----------~It~ed~~~ai~~v~~~~ 386 (399)
.||.+||..|++.+.++.
T Consensus 435 ~~~~~~~~~~~~vt~edf~~Al~~~~ps~ 463 (489)
T 3hu3_A 435 ETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (489)
T ss_dssp SSCCHHHHHHCCBCHHHHHHHHTSHHHHH
T ss_pred cccchhhcccCcCCHHHHHHHHHhCCchh
Confidence 489999999999987654
No 20
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=7.5e-36 Score=279.89 Aligned_cols=247 Identities=44% Similarity=0.770 Sum_probs=217.1
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
....|+.+|++++|+++++.++++.+.. +.++..+...++..++|++|+||||||||++++++++.++.+++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 3457889999999999999999998775 567888999999999999999999999999999999999999999999998
Q ss_pred hhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 212 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 212 ~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
...+.+.....++.+|+.+....|+++|+||+|.++..+.....+...+..+.+.+++.++++......++++++||+|+
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 88888888888999999988788999999999999876543222234566777888899998877767788999999999
Q ss_pred CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCcc
Q 015875 292 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVT 371 (399)
Q Consensus 292 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It 371 (399)
.+|++++|++||++.++++.|+.++|.+||+.+.+...+..++++..++..++|++++||+++|++|...|.+++...||
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~ 245 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 245 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 99999999999999999999999999999999998887778888999999999999999999999999999988888999
Q ss_pred HHHHHHHH
Q 015875 372 EKDFLDAV 379 (399)
Q Consensus 372 ~ed~~~ai 379 (399)
.+||.+|+
T Consensus 246 ~~dl~~a~ 253 (254)
T 1ixz_A 246 MKDLEEAA 253 (254)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999875
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.7e-36 Score=306.92 Aligned_cols=232 Identities=35% Similarity=0.618 Sum_probs=195.6
Q ss_pred cccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-CCceEEE
Q 015875 128 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-DACFIRV 206 (399)
Q Consensus 128 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-~~~~i~v 206 (399)
........|+++|++|+|++.+++.|++.+.+|+.+|+.|.. +..+++++|||||||||||++|+++|+++ +.+|+.+
T Consensus 121 ~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v 199 (444)
T 2zan_A 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI 199 (444)
T ss_dssp ---CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEE
T ss_pred hcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEE
Confidence 334456789999999999999999999999999999999875 35678999999999999999999999999 8999999
Q ss_pred eccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEE
Q 015875 207 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLM 285 (399)
Q Consensus 207 ~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~v~vI~ 285 (399)
+++++...+.|+.+..++.+|..++...|+||||||||.+++.+.... .....+.+.+++..++++. ...+++||+
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp CCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC---CGGGHHHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred eHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc---ccHHHHHHHHHHHHHhCcccCCCCEEEEe
Confidence 999999999999999999999999999999999999999988775443 2334456667778888765 357899999
Q ss_pred ecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHH
Q 015875 286 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 364 (399)
Q Consensus 286 atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~ 364 (399)
|||+++.++++++| ||+..+.+++|+.++|..||+.++...+.. .+.+++.|+..+.||+|+||..+|++|.+.|++
T Consensus 277 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r 354 (444)
T 2zan_A 277 ATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR 354 (444)
T ss_dssp EESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHH
T ss_pred cCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999877643 567889999999999999999999999999887
Q ss_pred H
Q 015875 365 A 365 (399)
Q Consensus 365 ~ 365 (399)
+
T Consensus 355 ~ 355 (444)
T 2zan_A 355 K 355 (444)
T ss_dssp H
T ss_pred H
Confidence 5
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=1.8e-34 Score=274.31 Aligned_cols=247 Identities=44% Similarity=0.770 Sum_probs=217.4
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
+...|+.+|++++|++++++++++.+.. +.++..+...++..+++++|+||||||||++++++++.++.+++.+++.++
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 3445889999999999999999998865 567888999999999999999999999999999999999999999999998
Q ss_pred hhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 212 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 212 ~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
...+.+.....+..+|+.+....|+++|+||+|.++..+.........+.+..+.+++.++++......++++++||+|+
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 189 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTT
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCch
Confidence 88888888888899999998888999999999998766533222234567788889999999877666788999999999
Q ss_pred CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCcc
Q 015875 292 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVT 371 (399)
Q Consensus 292 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It 371 (399)
.+|++++|++||++.++++.|+.++|.+||+.+++...+..++++..++..++|++++||+++|++|...|.+++...||
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~ 269 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 269 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBC
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 99999999999999999999999999999999998887777888999999999999999999999999999888888899
Q ss_pred HHHHHHHH
Q 015875 372 EKDFLDAV 379 (399)
Q Consensus 372 ~ed~~~ai 379 (399)
.+||.+|+
T Consensus 270 ~~dl~~a~ 277 (278)
T 1iy2_A 270 MKDLEEAA 277 (278)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999875
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=4.8e-35 Score=280.31 Aligned_cols=252 Identities=34% Similarity=0.572 Sum_probs=210.3
Q ss_pred cceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEecc
Q 015875 130 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 209 (399)
Q Consensus 130 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s 209 (399)
.++...++.+|++|+|++++++.|++.+..+..+|+.|..++ .++.++||+||||||||++|+++|++++.+|+.++++
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 88 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAA 88 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEEST
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHH
Confidence 345567899999999999999999999999999999988765 5678999999999999999999999999999999999
Q ss_pred chhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 210 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 210 ~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
++...+.|.....++.+|..+....|++|||||+|.+...+...........+..++..++.........+++||++||+
T Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 89 SLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp TTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred HHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 99999999999999999999999999999999999998876543333344455555555544332222357999999999
Q ss_pred CCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHc--
Q 015875 290 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR-- 366 (399)
Q Consensus 290 ~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~-- 366 (399)
++.+++++++ ||+..+.+++|+.++|..|++.+++..+.. .+.+++.++..+.|++++++..+|++|...|+++.
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999998876542 34567889999999999999999999999998864
Q ss_pred ----------CCCccHHHHHHHHHHHHh
Q 015875 367 ----------RKTVTEKDFLDAVNKVIK 384 (399)
Q Consensus 367 ----------~~~It~ed~~~ai~~v~~ 384 (399)
...|+.+||..|+..+.+
T Consensus 247 ~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 274 (297)
T 3b9p_A 247 EQVKCLDISAMRAITEQDFHSSLKRIRR 274 (297)
T ss_dssp -------CCCCCCCCHHHHHHHTTSCCC
T ss_pred hhcccccccccCCcCHHHHHHHHHHcCC
Confidence 257999999999876543
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=6.5e-38 Score=295.93 Aligned_cols=258 Identities=40% Similarity=0.722 Sum_probs=215.7
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh
Q 015875 134 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 213 (399)
Q Consensus 134 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~ 213 (399)
+.++.+|++|+|++++++.+++.+.. +.+++.|..++...++++||+||||||||++|+++|++++.+++.++++.+..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 46788999999999999999998875 78999999999999999999999999999999999999999999999999988
Q ss_pred hhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCC-CCChHHHHHHHHHHHHhcCCCC-CCCeEEEEecCCCC
Q 015875 214 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGV-GGDNEVQRTMLEIVNQLDGFDA-RGNIKVLMATNRPD 291 (399)
Q Consensus 214 ~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~-~~~~~~~~~l~~ll~~l~~~~~-~~~v~vI~atn~~~ 291 (399)
.+.|.+...++.+|..+....|++|||||+|.+...+..++. ..+......+.+++..+++... ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 888887777788899998888999999999999876532111 1112222344566666666543 34589999999999
Q ss_pred CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCcc
Q 015875 292 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVT 371 (399)
Q Consensus 292 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It 371 (399)
.++++++|+|||+..+.|+.|+.++|.++|+.+++......+.+++.++..+.|++|++|+++|+.|...|..++...|+
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~ 242 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcC
Confidence 99999999999999999999999999999999998887777788899999999999999999999999999877788999
Q ss_pred HHHHHHHHHHHHhhccccCCC
Q 015875 372 EKDFLDAVNKVIKGYQKFSAT 392 (399)
Q Consensus 372 ~ed~~~ai~~v~~~~~~~~~~ 392 (399)
.+||..|+..+......+.+.
T Consensus 243 ~~~~~~a~~~~~~~~~~~~~~ 263 (268)
T 2r62_A 243 QQHLKEAVERGIAGLEKKLEH 263 (268)
T ss_dssp HHHHHTSCTTCCCCCC-----
T ss_pred HHHHHHHHHHHhhcchhhhhh
Confidence 999999998877666554443
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=282.61 Aligned_cols=250 Identities=34% Similarity=0.596 Sum_probs=214.1
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccc
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 210 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~ 210 (399)
.....++.+|++|+|++.+++.|++.+..++.+++.|...+ .+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~ 152 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASS 152 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHH
Confidence 45667899999999999999999999999999999887764 67889999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEecC
Q 015875 211 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD--ARGNIKVLMATN 288 (399)
Q Consensus 211 l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~--~~~~v~vI~atn 288 (399)
+...+.|+....++.+|..+....|+||||||||.+...+.... .....+.+.+++..+++.. ...+++||+|||
T Consensus 153 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn 229 (357)
T 3d8b_A 153 LTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE---HESSRRIKTEFLVQLDGATTSSEDRILVVGATN 229 (357)
T ss_dssp GCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc---chHHHHHHHHHHHHHhcccccCCCCEEEEEecC
Confidence 99999999999999999999999999999999999987664322 2334455566677776653 346899999999
Q ss_pred CCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHc-
Q 015875 289 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR- 366 (399)
Q Consensus 289 ~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~- 366 (399)
+++.++++++| ||+..+.+++|+.++|.+|++.+++..+.. .+.+++.++..+.|+++++|..+|++|...++++.
T Consensus 230 ~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 230 RPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp CGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCC
T ss_pred ChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 999999999999999999999998776543 34568899999999999999999999999988753
Q ss_pred -----------CCCccHHHHHHHHHHHHhhc
Q 015875 367 -----------RKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 367 -----------~~~It~ed~~~ai~~v~~~~ 386 (399)
...|+.+||..|+.++.+..
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 308 TADIATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp C----------CCCBCHHHHHHHHHHHGGGC
T ss_pred hhhhccccccccCCcCHHHHHHHHHhcCCCC
Confidence 35799999999999987654
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=281.95 Aligned_cols=257 Identities=31% Similarity=0.542 Sum_probs=204.1
Q ss_pred CCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCce
Q 015875 124 DPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF 203 (399)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~ 203 (399)
...+...++...++.+|++|+|++.+++.|.+++..+..+++.|..++ .+++++|||||||||||++|+++|++++.+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~ 176 (389)
T 3vfd_A 98 ANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATF 176 (389)
T ss_dssp CTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcE
Confidence 334445567788999999999999999999999999999999888776 5678999999999999999999999999999
Q ss_pred EEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 015875 204 IRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 283 (399)
Q Consensus 204 i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v 283 (399)
+.++|+++...+.|.....++.+|..+....|+||||||||.++..+...........+..++..++.+.. ....+++|
T Consensus 177 ~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~v~v 255 (389)
T 3vfd_A 177 FNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS-AGDDRVLV 255 (389)
T ss_dssp EEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------CEEE
T ss_pred EEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc-cCCCCEEE
Confidence 99999999999999999999999999999999999999999998776443323333444444444443221 12457999
Q ss_pred EEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHH
Q 015875 284 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFA 362 (399)
Q Consensus 284 I~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A 362 (399)
|++||+++.++++++| ||+..+.++.|+.++|.+||+.++...+.. .+.++..++..+.|+++++|..+|+.|...+
T Consensus 256 I~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~ 333 (389)
T 3vfd_A 256 MGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGP 333 (389)
T ss_dssp EEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHH
T ss_pred EEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999998775543 3446789999999999999999999999999
Q ss_pred HHH------------cCCCccHHHHHHHHHHHHh
Q 015875 363 IRA------------RRKTVTEKDFLDAVNKVIK 384 (399)
Q Consensus 363 ~~~------------~~~~It~ed~~~ai~~v~~ 384 (399)
+++ ....|+.+||..++..+..
T Consensus 334 ~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 367 (389)
T 3vfd_A 334 IRELKPEQVKNMSASEMRNIRLSDFTESLKKIKR 367 (389)
T ss_dssp HHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCC
T ss_pred HHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCC
Confidence 887 2457999999999987543
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=9.5e-37 Score=328.90 Aligned_cols=237 Identities=43% Similarity=0.774 Sum_probs=209.7
Q ss_pred cceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEecc
Q 015875 130 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 209 (399)
Q Consensus 130 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s 209 (399)
......+.++|++++|++++++.|.+++.+++.+++.|..+++.++.++||+||||||||++|+++|+.++.+|+.++++
T Consensus 466 ~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 545 (806)
T 1ypw_A 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 545 (806)
T ss_dssp CCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCS
T ss_pred hhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEech
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 210 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 210 ~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
++..+|.|+.+..++.+|+.++...|+||||||||.++..+.......+....+.+.+++..++++....+++||+|||+
T Consensus 546 ~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~ 625 (806)
T 1ypw_A 546 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 625 (806)
T ss_dssp SSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBS
T ss_pred HhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCC
Confidence 99999999999999999999999999999999999998887543322234566777888999998888889999999999
Q ss_pred CCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHc
Q 015875 290 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR 366 (399)
Q Consensus 290 ~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~ 366 (399)
++.+|++++|||||+..|+|++|+.++|.+||+.+++...+..+++++.++..+.|||+++|.++|++|.+.|.++.
T Consensus 626 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp CGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred cccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888888899999999999999999999999999998764
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.9e-30 Score=279.90 Aligned_cols=247 Identities=41% Similarity=0.740 Sum_probs=220.9
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh
Q 015875 134 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 213 (399)
Q Consensus 134 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~ 213 (399)
..++++|++|+|+++++++|++.+..|+.+|+.|..+++.++.++||+||||||||++|+++|+.++.+++.++++++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 015875 214 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 293 (399)
Q Consensus 214 ~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 293 (399)
.+.|+....++.+|+.+....|+++||||+|.++..+.... .....+.+..++..+++.....++++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC---SHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc---chHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 99999999999999999999999999999999988764322 233345555667777777777889999999999999
Q ss_pred CccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcC------
Q 015875 294 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARR------ 367 (399)
Q Consensus 294 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~------ 367 (399)
++++.+++||++.+.++.|+.++|.+|++.+++.+.+..+.++..++..++|++++++..+|++|.+.+.++..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 99999999999999999999999999999999998888888899999999999999999999999998877543
Q ss_pred -----------CCccHHHHHHHHHHHH
Q 015875 368 -----------KTVTEKDFLDAVNKVI 383 (399)
Q Consensus 368 -----------~~It~ed~~~ai~~v~ 383 (399)
..++.+|+..++....
T Consensus 434 ~~~~~~~~~~~~~v~~~d~~~al~~~~ 460 (806)
T 1ypw_A 434 DETIDAEVMNSLAVTMDDFRWALSQSN 460 (806)
T ss_dssp HHHCCHHHHTTCCCCTTHHHHHHHHSC
T ss_pred hhccchhhhhhhhhhhhhhhccccccC
Confidence 2467778888877654
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.94 E-value=2.1e-27 Score=227.66 Aligned_cols=176 Identities=23% Similarity=0.330 Sum_probs=135.1
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHH----HcCCCEEEEEecCCcc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAI 246 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a----~~~~p~il~iDEiD~l 246 (399)
+.++|+++|||||||||||++|+++|++++.+|+.++++++...+.|+.+..++.+|..+ +...|+||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567899999999999999999999999999999999999999999999999999999988 5778999999999999
Q ss_pred cCCccCCCC--CCChHHHHHHHHHHHHhc--------CCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHH
Q 015875 247 GGARFDDGV--GGDNEVQRTMLEIVNQLD--------GFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLES 316 (399)
Q Consensus 247 ~~~r~~~~~--~~~~~~~~~l~~ll~~l~--------~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~e 316 (399)
++.+.+... .....++..|+++++... ......+++||+|||+++.+|++++|+|||+..+. .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 875432211 123356677777765221 22245679999999999999999999999998887 579999
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHH
Q 015875 317 RTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIR 352 (399)
Q Consensus 317 r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~ 352 (399)
|.+|++.++.. .+++.+.++..+.+|++++|.
T Consensus 190 r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 190 RIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp HHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHH
T ss_pred HHHHHHHhccC----CCCCHHHHHHHhCCCCcccHH
Confidence 99999988764 356788899999999987775
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.92 E-value=2.1e-25 Score=226.33 Aligned_cols=169 Identities=24% Similarity=0.266 Sum_probs=119.0
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC--CceEEEeccchh
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELV 212 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~--~~~i~v~~s~l~ 212 (399)
.|...|++++|++++++.+..++.. ...|..+++++|||||||||||++|+++|++++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~--------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL--------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH--------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 4566789999999999999888754 233667889999999999999999999999998 999999999999
Q ss_pred hhhhchhHHHHHHHHHHH---HcCCCEEEEEecCCcccCCccCCCCCCChHHHH-H---------------HHHHHHHhc
Q 015875 213 QKYVGEGARMVRELFQMA---RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQR-T---------------MLEIVNQLD 273 (399)
Q Consensus 213 ~~~~g~~~~~v~~~f~~a---~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~-~---------------l~~ll~~l~ 273 (399)
.++.|+.+. ++.+|..+ +...|++|||||+|.++++|.....++...... . ..+++..++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999987 89999999 788899999999999998886543222111111 0 011333332
Q ss_pred --CCCCCCCeEEEEecCCCCCCCccccCCCCcee--EEEecCC
Q 015875 274 --GFDARGNIKVLMATNRPDTLDPALLRPGRLDR--KVEFGLP 312 (399)
Q Consensus 274 --~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~--~i~~~~P 312 (399)
+......++|++|||+++.+|++++|+|||++ .+.++.|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p 224 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLP 224 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCC
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCC
Confidence 22222223444666667777777777777766 3444444
No 31
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.91 E-value=5.3e-23 Score=200.09 Aligned_cols=223 Identities=14% Similarity=0.132 Sum_probs=172.9
Q ss_pred cceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEecc
Q 015875 130 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 209 (399)
Q Consensus 130 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s 209 (399)
.+.+...+.+|++++|.+.+++.+..++..... ...++.++||+||||||||++|+++|+.++.+|+.++++
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~ 89 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAP 89 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecch
Confidence 455667778999999999999999999875211 224567899999999999999999999999999999997
Q ss_pred chhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC-------------C
Q 015875 210 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF-------------D 276 (399)
Q Consensus 210 ~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~-------------~ 276 (399)
.+. ....+...+.. ...+++|||||||.+ +...+..++.+++..... .
T Consensus 90 ~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3pfi_A 90 MIE------KSGDLAAILTN--LSEGDILFIDEIHRL-----------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKI 150 (338)
T ss_dssp GCC------SHHHHHHHHHT--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCC---------CCCCCC
T ss_pred hcc------chhHHHHHHHh--ccCCCEEEEechhhc-----------CHHHHHHHHHHHHhccchhhcccCccccceec
Confidence 653 12223333332 356789999999999 678888898888763210 0
Q ss_pred CCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHH
Q 015875 277 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVC 355 (399)
Q Consensus 277 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~ 355 (399)
...++++|++||+...+++++++ ||+..+.|++|+.+++..+++.++...+.. .....+.++..+.| +++++.+++
T Consensus 151 ~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l 227 (338)
T 3pfi_A 151 DLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLL 227 (338)
T ss_dssp CCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHH
T ss_pred CCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHH
Confidence 11258899999999999999999 999999999999999999999998876643 22335667775555 678999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHH
Q 015875 356 TEAGMFAIRARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 356 ~~A~~~A~~~~~~~It~ed~~~ai~~v 382 (399)
..+...|...+...|+.+++..++...
T Consensus 228 ~~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 228 KRVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 999888887778889999999888764
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.91 E-value=2e-23 Score=200.31 Aligned_cols=224 Identities=20% Similarity=0.244 Sum_probs=170.5
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCC---CCceeEeCCCCCcHHHHHHHHHHhc-------CCceEEEeccch
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP---PKGVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGSEL 211 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~---~~~vLL~GppGtGKT~larala~~~-------~~~~i~v~~s~l 211 (399)
+|+|++++++.|.+.+..+. .+..+...|+.+ +.++||+||||||||++|+++|+.+ ..+++.++++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 69999999999999998744 467777777654 3469999999999999999999977 348999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 212 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 212 ~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
...+.|.....+..+|..+ .+++|||||+|.++..+.+ ...+...+..|+.+++. ...++++|++||...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~-----~~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN-----NRDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHH-----CTTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhc-----CCCCEEEEEeCChHH
Confidence 9999999888888888877 3569999999999765432 22356777788777775 245788999998642
Q ss_pred -----CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHH-------CCCCcHHHHHHHHHHH
Q 015875 292 -----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL-------CPNSTGADIRSVCTEA 358 (399)
Q Consensus 292 -----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~-------~~g~sg~di~~l~~~A 358 (399)
.++|++++ ||+..++|++|+.+++..|++.++...+.. .......++.. ....+++++++++..|
T Consensus 181 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a 258 (309)
T 3syl_A 181 MENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRA 258 (309)
T ss_dssp HHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence 35799999 999999999999999999999999876543 12223445544 2233579999999998
Q ss_pred HHHHHHH----cCCCccHHHHHHH
Q 015875 359 GMFAIRA----RRKTVTEKDFLDA 378 (399)
Q Consensus 359 ~~~A~~~----~~~~It~ed~~~a 378 (399)
...+..+ ....++.+|+...
T Consensus 259 ~~~~~~r~~~~~~~~~~~~~l~~i 282 (309)
T 3syl_A 259 RLRQANRLFTASSGPLDARALSTI 282 (309)
T ss_dssp HHHHHHHHHHC---CEEHHHHHEE
T ss_pred HHHHHHHHHhccCCCCCHHHHhhc
Confidence 8765443 3456777776543
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.91 E-value=1.9e-23 Score=205.39 Aligned_cols=221 Identities=20% Similarity=0.249 Sum_probs=163.6
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC--ceEEEeccchh
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELV 212 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~--~~i~v~~s~l~ 212 (399)
.|..+|++++|++.+++.+..+... ...+..+++++||+||||||||++|+++|+.++. +|+.+++..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~--------~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEM--------IREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHHH--------HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 3455699999999999886655543 1124456789999999999999999999999874 88888887644
Q ss_pred hhhhch-------------------------------------------------hHHHHHHHHHHHHc-----C----C
Q 015875 213 QKYVGE-------------------------------------------------GARMVRELFQMARS-----K----K 234 (399)
Q Consensus 213 ~~~~g~-------------------------------------------------~~~~v~~~f~~a~~-----~----~ 234 (399)
..+.+. ....++..+..+.. . .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 332222 12334444433322 1 2
Q ss_pred CEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEec-----------CCCCCCCccccCCCCc
Q 015875 235 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT-----------NRPDTLDPALLRPGRL 303 (399)
Q Consensus 235 p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at-----------n~~~~ld~al~r~gRf 303 (399)
|+||||||+|.+ +.+.+..|+.+++. ....++++++. |.+..+++++++ ||
T Consensus 190 ~~vl~IDEi~~l-----------~~~~~~~L~~~le~-----~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~ 251 (368)
T 3uk6_A 190 PGVLFIDEVHML-----------DIESFSFLNRALES-----DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RL 251 (368)
T ss_dssp BCEEEEESGGGS-----------BHHHHHHHHHHTTC-----TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TE
T ss_pred CceEEEhhcccc-----------ChHHHHHHHHHhhC-----cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hc
Confidence 679999999999 56777777766643 22344444443 246789999999 99
Q ss_pred eeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 015875 304 DRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 304 ~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v 382 (399)
.. +.|++|+.+++.+|++.++...+.. .+..++.++..+.+.+++++..+|+.|...|..++...||.+|+.+++..+
T Consensus 252 ~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 252 LI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp EE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred cE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 55 8999999999999999888765443 233467788888756899999999999999999999999999999999874
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.90 E-value=2.4e-22 Score=193.98 Aligned_cols=221 Identities=18% Similarity=0.226 Sum_probs=170.3
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
....+.+|++++|.+.+++.+...+.... . ...++.++||+||||||||++|+++|+.++.+++.++++.+.
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 75 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAK-------A-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE 75 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHH-------H-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHH-------c-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC
Confidence 44667799999999999999999886421 1 113567899999999999999999999999999999987663
Q ss_pred hhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcC-----CC--------CCC
Q 015875 213 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG-----FD--------ARG 279 (399)
Q Consensus 213 ~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~-----~~--------~~~ 279 (399)
. ...+...+.. ....+++|||||+|.+ +...+..++.+++...- .. ...
T Consensus 76 ~------~~~l~~~l~~-~~~~~~~l~lDEi~~l-----------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 76 K------PGDLAAILAN-SLEEGDILFIDEIHRL-----------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp S------HHHHHHHHTT-TCCTTCEEEETTTTSC-----------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred C------hHHHHHHHHH-hccCCCEEEEECCccc-----------ccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 2 1122222221 1246779999999999 67788888888886420 00 113
Q ss_pred CeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHH
Q 015875 280 NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEA 358 (399)
Q Consensus 280 ~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A 358 (399)
++.+|++||.+..+++++++ ||+..+.+++|+.+++.++++.++...+.. .+...+.++..+.| +++++.++++.+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 57899999999999999998 998899999999999999999988765543 22335777888765 668999999998
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHH
Q 015875 359 GMFAIRARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 359 ~~~A~~~~~~~It~ed~~~ai~~v 382 (399)
...|...+...|+.+++..++...
T Consensus 215 ~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 215 RDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHh
Confidence 887766677789999998887654
No 35
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.86 E-value=2.5e-20 Score=168.28 Aligned_cols=207 Identities=20% Similarity=0.225 Sum_probs=154.3
Q ss_pred cceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-----CCceE
Q 015875 130 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFI 204 (399)
Q Consensus 130 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-----~~~~i 204 (399)
++.+..++.+|++++|.++.++.+.+++.. ..+.+++|+||||||||++|+++++.+ ...++
T Consensus 6 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 72 (226)
T 2chg_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (226)
T ss_dssp CHHHHTSCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEE
T ss_pred hHHHhcCCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceE
Confidence 456678889999999999999999999875 123359999999999999999999875 45688
Q ss_pred EEeccchhhhhhchhHHHHHHHHHHH-H-----cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 015875 205 RVIGSELVQKYVGEGARMVRELFQMA-R-----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 278 (399)
Q Consensus 205 ~v~~s~l~~~~~g~~~~~v~~~f~~a-~-----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 278 (399)
.++++..... ..+...+... . ...+.+|+|||+|.+ +...+..+..+++.. .
T Consensus 73 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~l~~~l~~~-----~ 130 (226)
T 2chg_A 73 EMNASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTMEMY-----S 130 (226)
T ss_dssp EEETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----T
T ss_pred EeccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhc-----------CHHHHHHHHHHHHhc-----C
Confidence 8887654321 1122222222 1 256789999999998 566677788887753 4
Q ss_pred CCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHH
Q 015875 279 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTE 357 (399)
Q Consensus 279 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~ 357 (399)
.++.+|++||.+..+++++.+ ||. .+.+++|+.++..++++.++...+.. .+...+.++..+.| +++.+.+++..
T Consensus 131 ~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~ 206 (226)
T 2chg_A 131 KSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQG 206 (226)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 567899999999899999998 886 89999999999999999888755543 22335667776655 55566666655
Q ss_pred HHHHHHHHcCCCccHHHHHHHHH
Q 015875 358 AGMFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 358 A~~~A~~~~~~~It~ed~~~ai~ 380 (399)
+...+ ..||.+|+.+++.
T Consensus 207 ~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 207 AAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHTC-----SCBCHHHHHHHHH
T ss_pred HHhcC-----ceecHHHHHHHhc
Confidence 54433 6899999999875
No 36
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.86 E-value=2e-20 Score=183.86 Aligned_cols=226 Identities=20% Similarity=0.217 Sum_probs=166.0
Q ss_pred CCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---------CCceEEEe
Q 015875 137 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVI 207 (399)
Q Consensus 137 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---------~~~~i~v~ 207 (399)
...+++++|.++.++.+..++...+. ...+.+++|+||||||||++|+++++.+ +.+++.++
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 33447799999999999998865322 1456789999999999999999999987 78899999
Q ss_pred ccchhhhh----------------hch-hHHHHHHHHHHHHc-CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHH
Q 015875 208 GSELVQKY----------------VGE-GARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 269 (399)
Q Consensus 208 ~s~l~~~~----------------~g~-~~~~v~~~f~~a~~-~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 269 (399)
|....... .|. .......++..+.. ..+.+|||||+|.+...+ ..+..+..++
T Consensus 86 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~ 156 (387)
T 2v1u_A 86 ARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRIT 156 (387)
T ss_dssp TTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHh
Confidence 87532211 111 22334445554433 348899999999994310 1567778888
Q ss_pred HHhcCCCCCCCeEEEEecCCC---CCCCccccCCCCcee-EEEecCCCHHHHHHHHHHHHhc----cCCCCcccHHHHHH
Q 015875 270 NQLDGFDARGNIKVLMATNRP---DTLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRT----MNCERDIRFELLAR 341 (399)
Q Consensus 270 ~~l~~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~~-~i~~~~P~~~er~~Il~~~~~~----~~~~~~~~~~~la~ 341 (399)
+.+.......++.+|++||.+ ..+++.+++ ||.. .+.|++|+.+++.+|++.++.. ..+. +...+.++.
T Consensus 157 ~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~ 233 (387)
T 2v1u_A 157 RINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAA 233 (387)
T ss_dssp HGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHH
T ss_pred hchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHH
Confidence 776544325678899999987 678899988 8875 8999999999999999988764 1222 233566777
Q ss_pred HCC---CCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 015875 342 LCP---NSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIK 384 (399)
Q Consensus 342 ~~~---g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~ 384 (399)
.+. | +++.+..+|+.|...|...+...|+.+|+..++.....
T Consensus 234 ~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 234 LAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 665 5 67788899999999888878889999999999987743
No 37
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.85 E-value=2.6e-22 Score=207.71 Aligned_cols=228 Identities=21% Similarity=0.301 Sum_probs=148.3
Q ss_pred CccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh----
Q 015875 138 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ---- 213 (399)
Q Consensus 138 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~---- 213 (399)
.-.++++|++++++.+.+.+...... ... ++..++|+||||||||++|+++|+.++.++..+++..+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 34467999999999998876542111 111 5668999999999999999999999999999999877543
Q ss_pred -----hhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CCC--------CC
Q 015875 214 -----KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD--------AR 278 (399)
Q Consensus 214 -----~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~--------~~ 278 (399)
.+.|.....+...|..+....| ++||||||.+...+ ..+.+..|+++++... .+. ..
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~-------~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDF-------RGDPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhh-------ccCHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 4566667777778887766666 99999999996543 1123455555554211 111 11
Q ss_pred CCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHh-----ccCCC---Cccc---HHHHHHHCCC-C
Q 015875 279 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR-----TMNCE---RDIR---FELLARLCPN-S 346 (399)
Q Consensus 279 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~-----~~~~~---~~~~---~~~la~~~~g-~ 346 (399)
.++++|+|||+++.++++|++ || ..|.|+.|+.+++.+|++.++. ..++. -.++ +..++....+ .
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred cceEEEeccCccccCCHHHHh--hc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 578999999999999999999 99 5799999999999999998762 22321 1122 3344443332 2
Q ss_pred cHHHHH----HHHHHHHHHHHHH--cCCCccHHHHHHHHHHHH
Q 015875 347 TGADIR----SVCTEAGMFAIRA--RRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 347 sg~di~----~l~~~A~~~A~~~--~~~~It~ed~~~ai~~v~ 383 (399)
+.++++ .+|+.|...+... ....||.+|+.+++....
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSCC
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCcc
Confidence 334544 5555555544443 234699999999887543
No 38
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=3.8e-21 Score=183.90 Aligned_cols=240 Identities=23% Similarity=0.269 Sum_probs=159.2
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhh-CCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh-hhhch
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKL-GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGE 218 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~-~~~g~ 218 (399)
++++|++++++.+...+..+..++.....+ +...+.++||+||||||||++|+++|+.++.+++.++|+.+.. .+.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 349999999999998886532221111111 1135779999999999999999999999999999999998865 45543
Q ss_pred h-HHHHHHHHHHH-----HcCCCEEEEEecCCcccCCccCCCCC-CChHHHHHHHHHHHHhcC-----CCCCCCeEEEEe
Q 015875 219 G-ARMVRELFQMA-----RSKKACIVFFDEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDG-----FDARGNIKVLMA 286 (399)
Q Consensus 219 ~-~~~v~~~f~~a-----~~~~p~il~iDEiD~l~~~r~~~~~~-~~~~~~~~l~~ll~~l~~-----~~~~~~v~vI~a 286 (399)
. ...++.++..+ ....++||||||+|.+.......... ....++..|+++++...- .....++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 2 34455555432 11235799999999997654321100 011235666666653210 012346788888
Q ss_pred c----CCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHH-----------hccCCC---CcccHHHHHHHC-----
Q 015875 287 T----NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT-----------RTMNCE---RDIRFELLARLC----- 343 (399)
Q Consensus 287 t----n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~-----------~~~~~~---~~~~~~~la~~~----- 343 (399)
+ +.+..+++++++ ||+..+.|++|+.+++.+|++... ...+.. .+..++.|+..+
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 4 567889999998 999899999999999999998311 112211 122345566554
Q ss_pred --CCCcHHHHHHHHHHHHHHHHHHcC------CCccHHHHHHHHHHH
Q 015875 344 --PNSTGADIRSVCTEAGMFAIRARR------KTVTEKDFLDAVNKV 382 (399)
Q Consensus 344 --~g~sg~di~~l~~~A~~~A~~~~~------~~It~ed~~~ai~~v 382 (399)
++.+.+++..+|+.+...+..... ..||.+|+.+++...
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred cccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 245778999999888755432221 149999999887754
No 39
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.84 E-value=1.7e-20 Score=189.54 Aligned_cols=210 Identities=21% Similarity=0.262 Sum_probs=152.9
Q ss_pred ceecCCCCccccccCcHHHH---HHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 131 TVEEKPDVTYNDVGGCKEQI---EKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~---~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
+.+...+.+|++++|++.++ ..|+..+.. ....++|||||||||||++|+++|+.++.+|+.++
T Consensus 16 la~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp HHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHhCCCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 34556788999999999999 788888865 12258999999999999999999999999999998
Q ss_pred ccchhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 015875 208 GSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 283 (399)
Q Consensus 208 ~s~l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v 283 (399)
+... +...++.++..+. ...+++|||||||.+ +...|..|+..++. +.+++
T Consensus 83 a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l-----------~~~~q~~LL~~le~-------~~v~l 137 (447)
T 3pvs_A 83 AVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRF-----------NKSQQDAFLPHIED-------GTITF 137 (447)
T ss_dssp TTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT-------TSCEE
T ss_pred eccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhh-----------CHHHHHHHHHHHhc-------CceEE
Confidence 7543 2233444444443 356789999999999 44556677777763 45777
Q ss_pred EEec--CCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccC-------CC-CcccHHHHHHHCCCCcHHHHHH
Q 015875 284 LMAT--NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN-------CE-RDIRFELLARLCPNSTGADIRS 353 (399)
Q Consensus 284 I~at--n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~-------~~-~~~~~~~la~~~~g~sg~di~~ 353 (399)
|++| |....+++++++ |+ .++.|++|+.+++..+++..+.... .. .+..++.|+..+.| +.+++.+
T Consensus 138 I~att~n~~~~l~~aL~s--R~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln 213 (447)
T 3pvs_A 138 IGATTENPSFELNSALLS--RA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALN 213 (447)
T ss_dssp EEEESSCGGGSSCHHHHT--TE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHH
T ss_pred EecCCCCcccccCHHHhC--ce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHH
Confidence 7776 445689999999 88 5888999999999999999887622 11 12235667777655 6667778
Q ss_pred HHHHHHHHHHHH--cCCCccHHHHHHHHHHH
Q 015875 354 VCTEAGMFAIRA--RRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 354 l~~~A~~~A~~~--~~~~It~ed~~~ai~~v 382 (399)
++..|...+... +...||.+++.+++...
T Consensus 214 ~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 214 TLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 887777666322 33579999999887654
No 40
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.84 E-value=2.2e-20 Score=180.56 Aligned_cols=208 Identities=21% Similarity=0.246 Sum_probs=147.4
Q ss_pred ccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEec
Q 015875 129 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 208 (399)
Q Consensus 129 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~ 208 (399)
..|.+.+.+.+|++++|++++++.+++++.. ...+..+|++||||||||++|+++|+.++.+++.+++
T Consensus 14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 14 HILEQKYRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEET
T ss_pred chHHHhhCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 4678889999999999999999999999873 2445678889999999999999999999999999998
Q ss_pred cchhhhhhchhHHHHHHHHHH-HHc----CCCEEEEEecCCcccCCccCCCCCCC-hHHHHHHHHHHHHhcCCCCCCCeE
Q 015875 209 SELVQKYVGEGARMVRELFQM-ARS----KKACIVFFDEVDAIGGARFDDGVGGD-NEVQRTMLEIVNQLDGFDARGNIK 282 (399)
Q Consensus 209 s~l~~~~~g~~~~~v~~~f~~-a~~----~~p~il~iDEiD~l~~~r~~~~~~~~-~~~~~~l~~ll~~l~~~~~~~~v~ 282 (399)
+... ...++..+.. +.. ..+.+|||||+|.+ . .+.+..|+.+++.. ..++.
T Consensus 82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l-----------~~~~~~~~L~~~le~~-----~~~~~ 138 (324)
T 3u61_B 82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRS-----------GLAESQRHLRSFMEAY-----SSNCS 138 (324)
T ss_dssp TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCG-----------GGHHHHHHHHHHHHHH-----GGGCE
T ss_pred cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCccc-----------CcHHHHHHHHHHHHhC-----CCCcE
Confidence 7642 2333433333 222 25789999999999 4 66788888888864 24678
Q ss_pred EEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHh-------ccCCC-Cc-ccHHHHHHHCCCCcHHHHHH
Q 015875 283 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR-------TMNCE-RD-IRFELLARLCPNSTGADIRS 353 (399)
Q Consensus 283 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~-------~~~~~-~~-~~~~~la~~~~g~sg~di~~ 353 (399)
+|++||.+..+++++++ || ..+.|++|+.++|.+|++.+.. ..++. .+ ..++.++..+.| +++.
T Consensus 139 iI~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g----d~R~ 211 (324)
T 3u61_B 139 IIITANNIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP----DFRK 211 (324)
T ss_dssp EEEEESSGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS----CTTH
T ss_pred EEEEeCCccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC----CHHH
Confidence 99999999999999999 99 5799999999998776654432 22222 22 345677777655 4444
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 015875 354 VCTEAGMFAIRARRKTVTEKDFLDAVNK 381 (399)
Q Consensus 354 l~~~A~~~A~~~~~~~It~ed~~~ai~~ 381 (399)
+++.....+ ....||.+++..++..
T Consensus 212 a~~~L~~~~---~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 212 TIGELDSYS---SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHHHHHG---GGTCBCC---------
T ss_pred HHHHHHHHh---ccCCCCHHHHHHHhCC
Confidence 444443333 3345888887765544
No 41
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.84 E-value=7.5e-21 Score=179.57 Aligned_cols=225 Identities=16% Similarity=0.171 Sum_probs=145.5
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh-hhhhchh
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV-QKYVGEG 219 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~-~~~~g~~ 219 (399)
+.++|.++.++.+....... ...+...+..++.++||+||||||||++|+++|+.++.+|+.+++++.. +...+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 45888888887777642210 1122333456778999999999999999999999999999999887532 2222333
Q ss_pred HHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEecCCCCCCCc-cc
Q 015875 220 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLMATNRPDTLDP-AL 297 (399)
Q Consensus 220 ~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~v~vI~atn~~~~ld~-al 297 (399)
...++.+|..+....+++|||||+|.+++.+..+. .....+++.|..+ +++.. ...+++||+|||.++.+++ .+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~l~~L~~~---~~~~~~~~~~~~ii~ttn~~~~l~~~~l 185 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-RFSNLVLQALLVL---LKKAPPQGRKLLIIGTTSRKDVLQEMEM 185 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-BCCHHHHHHHHHH---TTCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-hHHHHHHHHHHHH---hcCccCCCCCEEEEEecCChhhcchhhh
Confidence 45678889888888899999999999976543211 1223333333333 33332 3446889999999988877 56
Q ss_pred cCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCC----cHHHHHHHHHHHHHHHHHHcCCCccHH
Q 015875 298 LRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS----TGADIRSVCTEAGMFAIRARRKTVTEK 373 (399)
Q Consensus 298 ~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~----sg~di~~l~~~A~~~A~~~~~~~It~e 373 (399)
++ ||+..+.+|+++. |.+|.........+ .+..+..++..+.|+ +.+++.+++..|... ......+
T Consensus 186 ~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~-----~~~~~~~ 255 (272)
T 1d2n_A 186 LN--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM-----DPEYRVR 255 (272)
T ss_dssp TT--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS-----CGGGHHH
T ss_pred hc--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh-----chHHHHH
Confidence 65 9988888866554 34444444433333 344578888888886 345555555444322 2335556
Q ss_pred HHHHHHHHH
Q 015875 374 DFLDAVNKV 382 (399)
Q Consensus 374 d~~~ai~~v 382 (399)
++.+++...
T Consensus 256 ~~~~~l~~~ 264 (272)
T 1d2n_A 256 KFLALLREE 264 (272)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 666665543
No 42
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.83 E-value=1e-19 Score=177.17 Aligned_cols=225 Identities=16% Similarity=0.210 Sum_probs=150.1
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC-------c---
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-------C--- 202 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~-------~--- 202 (399)
...++.+|++++|.+.+++.+...... ..+.++||+||||||||++|+++|+.++. +
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~ 82 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSS 82 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCC
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccc
Confidence 445778999999999987765444332 12346999999999999999999998763 2
Q ss_pred -----------------------eEEEeccchhhhhhchhHHHHHHHHHHH---------HcCCCEEEEEecCCcccCCc
Q 015875 203 -----------------------FIRVIGSELVQKYVGEGARMVRELFQMA---------RSKKACIVFFDEVDAIGGAR 250 (399)
Q Consensus 203 -----------------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a---------~~~~p~il~iDEiD~l~~~r 250 (399)
++.+..........|.. .+...+... ....+++|||||+|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l---- 156 (350)
T 1g8p_A 83 PNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLL---- 156 (350)
T ss_dssp SSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS----
T ss_pred cccccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhC----
Confidence 22111111011111110 001111111 1123679999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHh----cCCCC----CCCeEEEEecCCCC-CCCccccCCCCceeEEEecCC-CHHHHHHH
Q 015875 251 FDDGVGGDNEVQRTMLEIVNQL----DGFDA----RGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLP-DLESRTQI 320 (399)
Q Consensus 251 ~~~~~~~~~~~~~~l~~ll~~l----~~~~~----~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~~~~P-~~~er~~I 320 (399)
+...+..|+++++.- ..... ..++++|+|||..+ .+++++++ ||+..+.++.| +.+++.+|
T Consensus 157 -------~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~i 227 (350)
T 1g8p_A 157 -------EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEV 227 (350)
T ss_dssp -------CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHH
T ss_pred -------CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 678889999988862 11111 13788999999744 89999999 99888999999 67777788
Q ss_pred HHHHHh-------------------------------ccCCCCcccHHHHHHHCCC---CcHHHHHHHHHHHHHHHHHHc
Q 015875 321 FKIHTR-------------------------------TMNCERDIRFELLARLCPN---STGADIRSVCTEAGMFAIRAR 366 (399)
Q Consensus 321 l~~~~~-------------------------------~~~~~~~~~~~~la~~~~g---~sg~di~~l~~~A~~~A~~~~ 366 (399)
++.++. ...++ +...+.|+....+ .+.+.+..+++.|...|..++
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~ 306 (350)
T 1g8p_A 228 IRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAALCIALGSDGLRGELTLLRSARALAALEG 306 (350)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 866321 11121 1123444444322 267999999999999998888
Q ss_pred CCCccHHHHHHHHHHHHhhc
Q 015875 367 RKTVTEKDFLDAVNKVIKGY 386 (399)
Q Consensus 367 ~~~It~ed~~~ai~~v~~~~ 386 (399)
+..|+.+|+.+|+..+....
T Consensus 307 ~~~v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 307 ATAVGRDHLKRVATMALSHR 326 (350)
T ss_dssp CSBCCHHHHHHHHHHHHGGG
T ss_pred CCcCCHHHHHHHHHHHHhhc
Confidence 88999999999999887544
No 43
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.83 E-value=3.1e-19 Score=162.95 Aligned_cols=208 Identities=19% Similarity=0.250 Sum_probs=154.1
Q ss_pred cceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc-------
Q 015875 130 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------- 202 (399)
Q Consensus 130 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~------- 202 (399)
.+.+...+.+|++++|.+..++.+...+.. + ..+..++|+||||+|||++++++++.+...
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~ 79 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 79 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 345667788899999999999999998864 1 234579999999999999999999876432
Q ss_pred -----------------eEEEeccchhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHH
Q 015875 203 -----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEV 261 (399)
Q Consensus 203 -----------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~ 261 (399)
++.+.... ......++.++..+. ...+.+|+|||+|.+ +...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-----------~~~~ 142 (250)
T 1njg_A 80 CGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHS 142 (250)
T ss_dssp CSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-----------CHHH
T ss_pred CcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-----------cHHH
Confidence 22222211 112334455555433 235789999999998 5666
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHH
Q 015875 262 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 340 (399)
Q Consensus 262 ~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la 340 (399)
+..++.+++. ...++.+|++||.+..+++++++ |+ ..+++++|+.++..++++.++...+.. .+...+.++
T Consensus 143 ~~~l~~~l~~-----~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~ 214 (250)
T 1njg_A 143 FNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 214 (250)
T ss_dssp HHHHHHHHHS-----CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 7777776653 24578899999998889999988 76 789999999999999999888765432 223367788
Q ss_pred HHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 341 RLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 341 ~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
..+.| +++.+..+|..|...+ ...||.+|+.+++
T Consensus 215 ~~~~G-~~~~~~~~~~~~~~~~----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 215 RAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 248 (250)
T ss_dssp HHHTT-CHHHHHHHHHHHHTTT----TSSBCHHHHHHHS
T ss_pred HHcCC-CHHHHHHHHHHHHhcc----CceecHHHHHHHh
Confidence 88866 7889999988875433 3479999998875
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.83 E-value=1.7e-19 Score=174.45 Aligned_cols=220 Identities=21% Similarity=0.256 Sum_probs=155.5
Q ss_pred CCCCcccccc-C--cHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec
Q 015875 135 KPDVTYNDVG-G--CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 208 (399)
Q Consensus 135 ~~~~~~~~i~-G--~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~ 208 (399)
.+..+|++++ | ...+...++.++..+ ...+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 4567888876 4 555666677766542 1245689999999999999999999988 899999999
Q ss_pred cchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 209 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 209 s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
.++...+.+.........|..... .+++|||||+|.+.+ ....+..++.+++.+. ..+..+|+++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~---------~~~~~~~l~~~l~~~~---~~~~~iii~~~~ 140 (324)
T 1l8q_A 74 DDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSG---------KERTQIEFFHIFNTLY---LLEKQIILASDR 140 (324)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTT---------CHHHHHHHHHHHHHHH---HTTCEEEEEESS
T ss_pred HHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccC---------ChHHHHHHHHHHHHHH---HCCCeEEEEecC
Confidence 888766554433222222322222 367999999999843 3366777887777643 133455666666
Q ss_pred CCC---CCCccccCCCCce--eEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHH-
Q 015875 289 RPD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMF- 361 (399)
Q Consensus 289 ~~~---~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~- 361 (399)
.+. .+++++++ ||. ..+++++ +.+++..|++.++...+.. ++..++.++..+ | +.+++..+++.+...
T Consensus 141 ~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~ 215 (324)
T 1l8q_A 141 HPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKG 215 (324)
T ss_dssp CGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHC
T ss_pred ChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcC
Confidence 654 68899998 886 6899999 9999999999998765543 223367788888 4 677888888777665
Q ss_pred --HHH-HcCCCc-cHHHHHHHHHHHH
Q 015875 362 --AIR-ARRKTV-TEKDFLDAVNKVI 383 (399)
Q Consensus 362 --A~~-~~~~~I-t~ed~~~ai~~v~ 383 (399)
++. .....| |.+++.+++....
T Consensus 216 ~~~l~~~~~~~i~t~~~i~~~~~~~~ 241 (324)
T 1l8q_A 216 FEGLERKERKERDKLMQIVEFVANYY 241 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCCCHHHHHHHHHHHh
Confidence 111 233458 8999999887653
No 45
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.83 E-value=1.5e-19 Score=182.53 Aligned_cols=222 Identities=20% Similarity=0.286 Sum_probs=158.9
Q ss_pred cCCCCcccccc-Cc--HHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-----CCceEE
Q 015875 134 EKPDVTYNDVG-GC--KEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIR 205 (399)
Q Consensus 134 ~~~~~~~~~i~-G~--~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-----~~~~i~ 205 (399)
..|..+|++++ |. ..+...+..++..+ + . +.+++||||||||||+||+++++.+ +.+++.
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~ 165 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEE
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 35667999976 54 33444555554431 1 1 5689999999999999999999987 888999
Q ss_pred EeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 015875 206 VIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 285 (399)
Q Consensus 206 v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ 285 (399)
+++.++...+.+.........|.......+++|||||+|.+.+ ....+..++.+++.+.. .+..+||+
T Consensus 166 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~---------~~~~q~~l~~~l~~l~~---~~~~iIit 233 (440)
T 2z4s_A 166 ITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG---------KTGVQTELFHTFNELHD---SGKQIVIC 233 (440)
T ss_dssp EEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS---------CHHHHHHHHHHHHHHHT---TTCEEEEE
T ss_pred eeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC---------ChHHHHHHHHHHHHHHH---CCCeEEEE
Confidence 9998876655433322212233333333677999999999954 23667788888877542 33444444
Q ss_pred ecCCCCC---CCccccCCCCce--eEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHH
Q 015875 286 ATNRPDT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAG 359 (399)
Q Consensus 286 atn~~~~---ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~ 359 (399)
+.+.+.. +++++++ ||. ..+.+++|+.++|..|++..+...++. ++..++.|+..+.| +.+++..+++.+.
T Consensus 234 t~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~ 310 (440)
T 2z4s_A 234 SDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLL 310 (440)
T ss_dssp ESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 4444443 7899998 886 689999999999999999988754432 22336788888866 8889999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHH
Q 015875 360 MFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 360 ~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
..|...+. .||.+++.+++....
T Consensus 311 ~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 311 VYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHHHhCC-CCCHHHHHHHHHHHh
Confidence 88876554 699999999987765
No 46
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.83 E-value=4.3e-20 Score=190.14 Aligned_cols=233 Identities=18% Similarity=0.214 Sum_probs=153.6
Q ss_pred ccccceecCCCCccccccCcHHHHHHHHHHHhcCC-CChhHHHhhCCC---CCCceeEeCCCCCcHHHHHHHHHHhcCCc
Q 015875 127 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPM-LHPEKFVKLGID---PPKGVLCYGPPGTGKTLLARAVANRTDAC 202 (399)
Q Consensus 127 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~-~~~~~~~~~g~~---~~~~vLL~GppGtGKT~larala~~~~~~ 202 (399)
...+|++++.+.+|++|+|++.+++.|++++.... .++..|...|.. +++++||+||||||||++|+++|++++.+
T Consensus 25 ~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 25 SDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred cCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 44689999999999999999999999999987522 112233333332 56799999999999999999999999999
Q ss_pred eEEEeccchhhhhhchhHH-------HHHHHHHHH-----HcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHH
Q 015875 203 FIRVIGSELVQKYVGEGAR-------MVRELFQMA-----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 270 (399)
Q Consensus 203 ~i~v~~s~l~~~~~g~~~~-------~v~~~f~~a-----~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 270 (399)
++.++++++.........- .+..+|..+ ....++||||||+|.+... .......+..+++
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~--------~~~~l~~L~~~l~ 176 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG--------DRGGVGQLAQFCR 176 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT--------STTHHHHHHHHHH
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh--------hHHHHHHHHHHHH
Confidence 9999998875543211000 011222222 2356789999999999643 2223455666665
Q ss_pred HhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHH
Q 015875 271 QLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGA 349 (399)
Q Consensus 271 ~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~ 349 (399)
.. ...+++|+++.....+. .+. |+...+.|++|+.+++.+++...+...++. .+..++.|+..+.|
T Consensus 177 ~~-----~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G---- 243 (516)
T 1sxj_A 177 KT-----STPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG---- 243 (516)
T ss_dssp HC-----SSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----
T ss_pred hc-----CCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----
Confidence 41 22343333333333343 344 444799999999999999998777554432 22347788888755
Q ss_pred HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 015875 350 DIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 350 di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v 382 (399)
+++.+++.....+. ....|+.+++..++...
T Consensus 244 diR~~i~~L~~~~~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 244 DIRQVINLLSTIST--TTKTINHENINEISKAW 274 (516)
T ss_dssp CHHHHHHHHTHHHH--HSSCCCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh--cCCCCchHHHHHHHHhh
Confidence 55555555544443 45568888887776643
No 47
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.83 E-value=7.8e-20 Score=179.89 Aligned_cols=234 Identities=21% Similarity=0.249 Sum_probs=155.4
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHH--hhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh-hhchh
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFV--KLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK-YVGEG 219 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~--~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~-~~g~~ 219 (399)
|+|++.+++.+...+........... .....++.++||+||||||||++|+++|+.++.+|+.++|+++... +.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 79999999999998853221111000 0011367899999999999999999999999999999999988754 67765
Q ss_pred -HHHHHHHHHHH----HcCCCEEEEEecCCcccCCccCCCCCCCh---HHHHHHHHHHHHhc----------------CC
Q 015875 220 -ARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDN---EVQRTMLEIVNQLD----------------GF 275 (399)
Q Consensus 220 -~~~v~~~f~~a----~~~~p~il~iDEiD~l~~~r~~~~~~~~~---~~~~~l~~ll~~l~----------------~~ 275 (399)
...+..+|..+ ....++||||||||.+...+.+.+.+.+. .++..|+++|+... .+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 55667777665 33457799999999998776443333222 26777777776110 01
Q ss_pred CCCCCeEEEEecCCC----------CC-----------------------------------CCccccCCCCceeEEEec
Q 015875 276 DARGNIKVLMATNRP----------DT-----------------------------------LDPALLRPGRLDRKVEFG 310 (399)
Q Consensus 276 ~~~~~v~vI~atn~~----------~~-----------------------------------ld~al~r~gRf~~~i~~~ 310 (399)
-...++++|+++|.. .. +.|+|++ ||+..+.|+
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 123455566665532 11 6788887 999999999
Q ss_pred CCCHHHHHHHHHH----HHhc-------cCCCCccc---HHHHHH--HCCCCcHHHHHHHHHHHHHHHHHHcCC------
Q 015875 311 LPDLESRTQIFKI----HTRT-------MNCERDIR---FELLAR--LCPNSTGADIRSVCTEAGMFAIRARRK------ 368 (399)
Q Consensus 311 ~P~~~er~~Il~~----~~~~-------~~~~~~~~---~~~la~--~~~g~sg~di~~l~~~A~~~A~~~~~~------ 368 (399)
+|+.+++.+|+.. .++. .+....++ .+.|+. ....+..++|+++++.+...+..+...
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~~ 334 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEK 334 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCSEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCCce
Confidence 9999999998875 2221 12221222 445554 233455689999999988877655321
Q ss_pred -CccHHHHHHH
Q 015875 369 -TVTEKDFLDA 378 (399)
Q Consensus 369 -~It~ed~~~a 378 (399)
.||.+++.+.
T Consensus 335 ~~I~~~~v~~~ 345 (363)
T 3hws_A 335 VVIDESVIDGQ 345 (363)
T ss_dssp EECHHHHTTCC
T ss_pred eEEcHHHHhCc
Confidence 3676666543
No 48
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.82 E-value=2.9e-19 Score=173.29 Aligned_cols=222 Identities=18% Similarity=0.176 Sum_probs=157.7
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh--
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV-- 212 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~-- 212 (399)
..+..+++++|++++++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++..-.
T Consensus 21 ~~~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~ 85 (331)
T 2r44_A 21 VIDEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLP 85 (331)
T ss_dssp HHHHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCH
T ss_pred HHHHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCCh
Confidence 3444567899999999988887753 35899999999999999999999999999999874211
Q ss_pred hhhhchhHH-HHHHHHHHHHcC--CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc----C--CCCCCCeEE
Q 015875 213 QKYVGEGAR-MVRELFQMARSK--KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----G--FDARGNIKV 283 (399)
Q Consensus 213 ~~~~g~~~~-~v~~~f~~a~~~--~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~--~~~~~~v~v 283 (399)
....|.... .....|. .... ..++|||||+|.+ +...+..+++.+++.. + .....++++
T Consensus 86 ~~l~g~~~~~~~~~~~~-~~~g~l~~~vl~iDEi~~~-----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 86 SDLIGTMIYNQHKGNFE-VKKGPVFSNFILADEVNRS-----------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp HHHHEEEEEETTTTEEE-EEECTTCSSEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred hhcCCceeecCCCCceE-eccCcccccEEEEEccccC-----------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 111111000 0000000 0000 1269999999998 6788899999888632 1 112346778
Q ss_pred EEecCCCC-----CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-----------------------Cccc
Q 015875 284 LMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-----------------------RDIR 335 (399)
Q Consensus 284 I~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-----------------------~~~~ 335 (399)
|+|+|..+ .+++++++ ||+..+.++.|+.+++.+|++.+....... .+..
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 231 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESL 231 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHH
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHH
Confidence 88888543 38999999 998899999999999999999887543110 1111
Q ss_pred HHHHHHHC-------------------CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 015875 336 FELLARLC-------------------PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 336 ~~~la~~~-------------------~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~ 385 (399)
.+.++... .|.+++.+..+++.|...|..+++..|+.+|+.+++..+...
T Consensus 232 ~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 232 EKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 23333221 255899999999999999999999999999999999988643
No 49
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.82 E-value=2.6e-19 Score=174.42 Aligned_cols=213 Identities=16% Similarity=0.181 Sum_probs=156.2
Q ss_pred ccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC------Cc
Q 015875 129 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD------AC 202 (399)
Q Consensus 129 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~------~~ 202 (399)
..+.+.+.+.+|++++|++++++.+..++.. + .+.++||+||||||||++|+++++.++ ..
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~ 91 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKS-----------A--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR 91 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC-----------T--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhc-----------C--CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc
Confidence 4577888999999999999999999998864 1 223499999999999999999999754 45
Q ss_pred eEEEeccchhhhhhchhHHHHHHHHHHH----------------HcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHH
Q 015875 203 FIRVIGSELVQKYVGEGARMVRELFQMA----------------RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML 266 (399)
Q Consensus 203 ~i~v~~s~l~~~~~g~~~~~v~~~f~~a----------------~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~ 266 (399)
++.+++++... ...++..+... ....+.+|||||+|.+ +...+..++
T Consensus 92 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-----------~~~~~~~Ll 154 (353)
T 1sxj_D 92 ILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM-----------TADAQSALR 154 (353)
T ss_dssp EEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-----------CHHHHHHHH
T ss_pred eEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc-----------CHHHHHHHH
Confidence 78888776421 11122111111 1234579999999999 667788888
Q ss_pred HHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCC
Q 015875 267 EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 345 (399)
Q Consensus 267 ~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g 345 (399)
+++++. ..++.+|++||.+..+.+++++ |+. .+.|++|+.++...+++..+...++. .+..++.++..+.|
T Consensus 155 ~~le~~-----~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 226 (353)
T 1sxj_D 155 RTMETY-----SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG 226 (353)
T ss_dssp HHHHHT-----TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS
T ss_pred HHHHhc-----CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 888764 3457788889999999999998 884 89999999999999999887655432 23346778888876
Q ss_pred CcHHHHHHHHHHHHHHHHHHcCC-CccHHHHHHHHH
Q 015875 346 STGADIRSVCTEAGMFAIRARRK-TVTEKDFLDAVN 380 (399)
Q Consensus 346 ~sg~di~~l~~~A~~~A~~~~~~-~It~ed~~~ai~ 380 (399)
+.+.+.+++..+...+.+.+.. .||.+|+.+++.
T Consensus 227 -~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 227 -DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp -CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 4556666666666655443322 799999887654
No 50
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.82 E-value=3e-21 Score=193.33 Aligned_cols=169 Identities=19% Similarity=0.197 Sum_probs=84.7
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCC-CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh-hhhch-
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGI-DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGE- 218 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~-~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~-~~~g~- 218 (399)
+|+|++++++.+..++..+.+++..+..++. .+++++||+||||||||++|+++|+.++.+|+.++++.+.. .|+|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 5999999999999999877666666555443 36789999999999999999999999999999999999988 58885
Q ss_pred hHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe-cCCCCCCCccc
Q 015875 219 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA-TNRPDTLDPAL 297 (399)
Q Consensus 219 ~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~a-tn~~~~ld~al 297 (399)
.+..++.+|..+... +++||++.+..... .....+.+.+|+.+++++.....+ +++ ||+++.+|++|
T Consensus 96 ~e~~lr~lf~~a~~~----~~~De~d~~~~~~~------~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL 163 (444)
T 1g41_A 96 VDSIIRDLTDSAMKL----VRQQEIAKNRARAE------DVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKL 163 (444)
T ss_dssp THHHHHHHHHHHHHH----HHHHHHHSCC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHhc----chhhhhhhhhccch------hhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHH
Confidence 789999999988764 45899888754321 122346677788888888665554 455 99999999999
Q ss_pred cCCCCceeEEEecCCCHH-HHHHHHH
Q 015875 298 LRPGRLDRKVEFGLPDLE-SRTQIFK 322 (399)
Q Consensus 298 ~r~gRf~~~i~~~~P~~~-er~~Il~ 322 (399)
+|+||||+.|++++|+.. .|.+|+.
T Consensus 164 ~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 164 REGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp --------------------------
T ss_pred HcCCCcceEEEEcCCCCccchhhhhc
Confidence 999999999999999987 7888764
No 51
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.81 E-value=6.6e-19 Score=161.60 Aligned_cols=207 Identities=12% Similarity=0.136 Sum_probs=148.7
Q ss_pred CCCCccccccC---cHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec
Q 015875 135 KPDVTYNDVGG---CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 208 (399)
Q Consensus 135 ~~~~~~~~i~G---~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~ 208 (399)
.+..+|++++| ...+++.++.++.. ..+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 22 PDDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp CTTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 34578888775 35777777777654 245689999999999999999999876 478888998
Q ss_pred cchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 209 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 209 s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
+++....... +.. ...+.+|||||+|.+.. ....+..+..+++... ..+.+.+|++|+
T Consensus 89 ~~~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~---------~~~~~~~l~~~l~~~~---~~~~~~ii~~~~ 146 (242)
T 3bos_A 89 GIHASISTAL--------LEG--LEQFDLICIDDVDAVAG---------HPLWEEAIFDLYNRVA---EQKRGSLIVSAS 146 (242)
T ss_dssp GGGGGSCGGG--------GTT--GGGSSEEEEETGGGGTT---------CHHHHHHHHHHHHHHH---HHCSCEEEEEES
T ss_pred HHHHHHHHHH--------HHh--ccCCCEEEEeccccccC---------CHHHHHHHHHHHHHHH---HcCCCeEEEEcC
Confidence 8876543211 111 13467999999999843 3344677777776643 123333555555
Q ss_pred C-CC---CCCccccCCCCce--eEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHH
Q 015875 289 R-PD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMF 361 (399)
Q Consensus 289 ~-~~---~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~ 361 (399)
. +. .+++++.+ ||. ..+++++|+.+++.+++..++...+.. .+...+.++..+.| +.+++.++++.+...
T Consensus 147 ~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 147 ASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKA 223 (242)
T ss_dssp SCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 3 43 45578887 775 899999999999999999988765542 22335677888765 778999999999888
Q ss_pred HHHHcCCCccHHHHHHHHH
Q 015875 362 AIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 362 A~~~~~~~It~ed~~~ai~ 380 (399)
|...+ ..||.+++.+++.
T Consensus 224 a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 224 SMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHT-CCCCHHHHHHHHT
T ss_pred HHHhC-CCCcHHHHHHHhh
Confidence 86555 4599999998864
No 52
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.81 E-value=3.8e-19 Score=175.19 Aligned_cols=212 Identities=18% Similarity=0.203 Sum_probs=154.1
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-----------CCceEEEecc
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----------DACFIRVIGS 209 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-----------~~~~i~v~~s 209 (399)
++++|.++.++++...+..... ...+.+++|+||||||||++|+++++.+ +.+++.++|.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 6799999999999988864222 1456789999999999999999999987 8899999987
Q ss_pred chh-hh----------h-------hch-hHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHH-HHHHH
Q 015875 210 ELV-QK----------Y-------VGE-GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRT-MLEIV 269 (399)
Q Consensus 210 ~l~-~~----------~-------~g~-~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~-l~~ll 269 (399)
... .. . .+. ....+..++..+....+ +|||||+|.+.... .+.. +..++
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~----------~~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR----------GGDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST----------TSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC----------CCceeHHHHh
Confidence 643 10 0 011 12334455555544444 99999999984321 1233 33333
Q ss_pred HHhcCCCCCCCeEEEEecCCC---CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhc----cCCCCcccHHHHHHH
Q 015875 270 NQLDGFDARGNIKVLMATNRP---DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT----MNCERDIRFELLARL 342 (399)
Q Consensus 270 ~~l~~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~----~~~~~~~~~~~la~~ 342 (399)
+.. .++.+|++||.+ ..+++++++ ||...+.|++|+.++..+|++.++.. ..+. +..++.++..
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~ 230 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAI 230 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHH
Confidence 321 678999999987 678999988 88779999999999999999988763 1222 2335667776
Q ss_pred CCC--CcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 343 CPN--STGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 343 ~~g--~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
+.+ .+.+.+.++|..|...|. +...|+.+|+..++..+.
T Consensus 231 ~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 231 SAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 652 255677788888888775 567899999999998875
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.80 E-value=7.6e-18 Score=163.96 Aligned_cols=222 Identities=18% Similarity=0.242 Sum_probs=163.0
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
.....+.++++++|.+.+++.+...+..... .-.++.+++|+||||+||||+|+++|+.+++++...+++.+
T Consensus 16 ~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~--------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~ 87 (334)
T 1in4_A 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKM--------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87 (334)
T ss_dssp -CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH--------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred HHHcCCccHHHccCcHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence 3445566889999999999988887753110 11355789999999999999999999999998877776544
Q ss_pred hhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc-------CCC------CC
Q 015875 212 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-------GFD------AR 278 (399)
Q Consensus 212 ~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-------~~~------~~ 278 (399)
.. ...+..++.. .....|+||||++.+ ...++..++..++... +.. ..
T Consensus 88 ~~------~~~l~~~~~~--~~~~~v~~iDE~~~l-----------~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l 148 (334)
T 1in4_A 88 VK------QGDMAAILTS--LERGDVLFIDEIHRL-----------NKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDI 148 (334)
T ss_dssp CS------HHHHHHHHHH--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCCCC---------------
T ss_pred cC------HHHHHHHHHH--ccCCCEEEEcchhhc-----------CHHHHHHHHHHHHhcccceeeccCcccccccccC
Confidence 21 1122233322 234569999999998 3455666655554321 000 01
Q ss_pred CCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHH
Q 015875 279 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTE 357 (399)
Q Consensus 279 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~ 357 (399)
..+.++++|+++..+++++++ ||...+.|++|+.+++.+|++...+..+.. .+.....++..+.| +++.+..+++.
T Consensus 149 ~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~ 225 (334)
T 1in4_A 149 QPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKR 225 (334)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHH
T ss_pred CCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 246778899999999999999 998889999999999999999888765543 22235677888776 66899999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 358 AGMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 358 A~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
+..+|...+...||.+++.+++....
T Consensus 226 ~~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 226 VRDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 99999888888899999999998753
No 54
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.80 E-value=6.5e-20 Score=176.65 Aligned_cols=215 Identities=9% Similarity=0.088 Sum_probs=152.3
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CCceEEEeccchh
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFIRVIGSELV 212 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~~~i~v~~s~l~ 212 (399)
|.|.++++++|...+...+. ...+.++||+||||||||++++++++++ ...++.++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~---------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM---------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 88899999999888865332 2567899999999999999999999987 3568899986643
Q ss_pred hh----------hh------chhHHHHHHHHHHH--HcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcC
Q 015875 213 QK----------YV------GEGARMVRELFQMA--RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG 274 (399)
Q Consensus 213 ~~----------~~------g~~~~~v~~~f~~a--~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~ 274 (399)
.. .. +.....++..|... ....+.||||||+|.+. .|+.|..+++...
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~- 158 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS- 158 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc-
Confidence 32 22 23456677788764 34667899999999995 1456666666432
Q ss_pred CCCCCCeEEEEecCCCCC----CCccccCCCCce-eEEEecCCCHHHHHHHHHHHHhccCCC------------------
Q 015875 275 FDARGNIKVLMATNRPDT----LDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRTMNCE------------------ 331 (399)
Q Consensus 275 ~~~~~~v~vI~atn~~~~----ld~al~r~gRf~-~~i~~~~P~~~er~~Il~~~~~~~~~~------------------ 331 (399)
....++.+|+++|..+. +++++++ ||. ..|.|++++.++..+|++.++....-.
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~ 235 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIR 235 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 24567899999998754 4556666 886 689999999999999999988764210
Q ss_pred ------------------CcccHHHHHHHCCCC--cHHHHHHHHHHHHHHHHHH---------cCCCccHHHHHHHHHHH
Q 015875 332 ------------------RDIRFELLARLCPNS--TGADIRSVCTEAGMFAIRA---------RRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 332 ------------------~~~~~~~la~~~~g~--sg~di~~l~~~A~~~A~~~---------~~~~It~ed~~~ai~~v 382 (399)
.+..++.+|+..... ..|..-.+|+.|...|.++ +..+||.+.+.+++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~ 315 (318)
T 3te6_A 236 EGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEA 315 (318)
T ss_dssp -------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHHH
T ss_pred ccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHH
Confidence 111244555532221 3355557888888888653 22467888888777776
Q ss_pred H
Q 015875 383 I 383 (399)
Q Consensus 383 ~ 383 (399)
+
T Consensus 316 ~ 316 (318)
T 3te6_A 316 I 316 (318)
T ss_dssp H
T ss_pred h
Confidence 5
No 55
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.80 E-value=1.7e-19 Score=159.07 Aligned_cols=162 Identities=25% Similarity=0.362 Sum_probs=123.0
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CCce
Q 015875 134 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACF 203 (399)
Q Consensus 134 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~~~ 203 (399)
..++.+|++++|.++.++++.+.+.. ..+.+++|+||||||||++|+++++.+ +.++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 15 RAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 34567889999999999999888754 345689999999999999999999986 6888
Q ss_pred EEEeccchh--hhhhchhHHHHHHHHHHHH-cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 015875 204 IRVIGSELV--QKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 280 (399)
Q Consensus 204 i~v~~s~l~--~~~~g~~~~~v~~~f~~a~-~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 280 (399)
+.+++..+. ..+.+.....+..++..+. ...+.+|||||+|.+...+... .....+..+..+++ ..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l~~~~~-------~~~ 151 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPALA-------RGE 151 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHH-------TTS
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHHHHhhc-------cCC
Confidence 999988776 3445666667777777553 4568899999999997543211 12334555555543 346
Q ss_pred eEEEEecCCCC-----CCCccccCCCCceeEEEecCCCHHHHHHHH
Q 015875 281 IKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIF 321 (399)
Q Consensus 281 v~vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il 321 (399)
+.+|++||.+. .+++++++ ||. .+.+++|+.+++.+|+
T Consensus 152 ~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 152 LHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred eEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 77899998865 78999999 996 7999999999998875
No 56
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.79 E-value=5.6e-19 Score=169.33 Aligned_cols=210 Identities=20% Similarity=0.202 Sum_probs=145.1
Q ss_pred cceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-----CCceE
Q 015875 130 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFI 204 (399)
Q Consensus 130 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-----~~~~i 204 (399)
++.+++.+.+|++++|++.+++.+...+.. + ...++||+||||||||++|+++++.+ +.+++
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 72 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------T--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------C--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeE
Confidence 466778899999999999999999888754 1 22249999999999999999999986 34678
Q ss_pred EEeccchhhhhhchhHHHHHHHHHHH--HcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeE
Q 015875 205 RVIGSELVQKYVGEGARMVRELFQMA--RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 282 (399)
Q Consensus 205 ~v~~s~l~~~~~g~~~~~v~~~f~~a--~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 282 (399)
.+++++..+. ......+....... ....+.+|+|||+|.+ +.+.+..+..+++. ...++.
T Consensus 73 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~le~-----~~~~~~ 134 (319)
T 2chq_A 73 EMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTMEM-----YSKSCR 134 (319)
T ss_dssp EEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS-----------CHHHHHTTGGGTSS-----SSSSEE
T ss_pred EEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC-----------CHHHHHHHHHHHHh-----cCCCCe
Confidence 8888764321 11112222222111 1245789999999998 45555655554432 345788
Q ss_pred EEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHH
Q 015875 283 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMF 361 (399)
Q Consensus 283 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~ 361 (399)
+|++||.+..+.+++.+ |+ ..+.|++|+.+++..++..++...+.. .+..++.++..+.| +.+.+.++++.+
T Consensus 135 ~i~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~--- 207 (319)
T 2chq_A 135 FILSCNYVSRIIEPIQS--RC-AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA--- 207 (319)
T ss_dssp EEEEESCGGGSCHHHHT--TC-EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHH---
T ss_pred EEEEeCChhhcchHHHh--hC-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH---
Confidence 99999999999999999 88 489999999999999999988766543 22234566665544 344444444433
Q ss_pred HHHHcCCCccHHHHHHHH
Q 015875 362 AIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 362 A~~~~~~~It~ed~~~ai 379 (399)
+. ....||.+++.+++
T Consensus 208 ~~--~~~~i~~~~v~~~~ 223 (319)
T 2chq_A 208 AA--IGEVVDADTIYQIT 223 (319)
T ss_dssp HH--SSSCBCHHHHHHHT
T ss_pred HH--cCCCCCHHHHHHHH
Confidence 22 13457777776543
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.79 E-value=1.8e-18 Score=185.86 Aligned_cols=225 Identities=24% Similarity=0.297 Sum_probs=166.4
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CCc
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DAC 202 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~~ 202 (399)
+...+..|++++|.++.++++.+.+.. ..+.++||+||||||||++|+++|+.+ +..
T Consensus 178 ~~~~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~ 244 (758)
T 1r6b_X 178 QLARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCT 244 (758)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCE
T ss_pred HHHhcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCE
Confidence 345566889999999999999988764 356689999999999999999999976 667
Q ss_pred eEEEeccchh--hhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 015875 203 FIRVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 280 (399)
Q Consensus 203 ~i~v~~s~l~--~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 280 (399)
++.+++..+. .++.|..+..++.+|..+....++||||||+|.+.+.+... ++..+.++ .+..+-..++
T Consensus 245 ~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~~~-------~L~~~l~~~~ 315 (758)
T 1r6b_X 245 IYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAAN-------LIKPLLSSGK 315 (758)
T ss_dssp EEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHHHH-------HHSSCSSSCC
T ss_pred EEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHHHH-------HHHHHHhCCC
Confidence 8888877776 45788889999999999988888999999999997654221 11222222 2223334678
Q ss_pred eEEEEecCCC-----CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhcc----CCC-CcccHHHHHHHC-----CC
Q 015875 281 IKVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM----NCE-RDIRFELLARLC-----PN 345 (399)
Q Consensus 281 v~vI~atn~~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~----~~~-~~~~~~~la~~~-----~g 345 (399)
+.+|++||.+ ..+|+++.+ ||. .+.|+.|+.+++.+|++.+...+ .+. .+..+..++..+ ..
T Consensus 316 ~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~ 392 (758)
T 1r6b_X 316 IRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR 392 (758)
T ss_dssp CEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTS
T ss_pred eEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccc
Confidence 8899999864 357899999 996 79999999999999999877542 211 122234444443 34
Q ss_pred CcHHHHHHHHHHHHHHHHH----HcCCCccHHHHHHHHHHH
Q 015875 346 STGADIRSVCTEAGMFAIR----ARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 346 ~sg~di~~l~~~A~~~A~~----~~~~~It~ed~~~ai~~v 382 (399)
+.+..+..++.+|...+.. .....|+.+|+.+++...
T Consensus 393 ~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 393 HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp CTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 5677888999998876654 235679999999998875
No 58
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.79 E-value=2.1e-18 Score=169.15 Aligned_cols=224 Identities=19% Similarity=0.254 Sum_probs=157.1
Q ss_pred CccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc------CCceEEEeccch
Q 015875 138 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT------DACFIRVIGSEL 211 (399)
Q Consensus 138 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~------~~~~i~v~~s~l 211 (399)
..+++++|.++.++.+.+++...+. ...+..++|+||||||||++++++++.+ +.+++.++|...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 4457799999999999998864221 1456789999999999999999999987 888999997643
Q ss_pred hh------hh----------hch-hHHHHHHHHHHHHcC-CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc
Q 015875 212 VQ------KY----------VGE-GARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 273 (399)
Q Consensus 212 ~~------~~----------~g~-~~~~v~~~f~~a~~~-~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~ 273 (399)
.. .. .+. .......++..+... .|.+|+|||+|.+.... +.+. +..++..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------~~~~---l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------NDDI---LYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------CSTH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------cCHH---HHHHhhchh
Confidence 21 10 111 223344455554443 38899999999985321 1223 334444443
Q ss_pred CCCCCCCeEEEEecCCC---CCCCccccCCCCce-eEEEecCCCHHHHHHHHHHHHhccCC---CCcccHHHHHHHCCC-
Q 015875 274 GFDARGNIKVLMATNRP---DTLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRTMNC---ERDIRFELLARLCPN- 345 (399)
Q Consensus 274 ~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~-~~i~~~~P~~~er~~Il~~~~~~~~~---~~~~~~~~la~~~~g- 345 (399)
.. ...++.+|++||.+ ..+++.+.+ ||. +.+.|++++.++..++++.++..... ..+...+.++..+..
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAARE 234 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHT
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 22 34578899999876 467888887 665 58999999999999999987753221 112234556666541
Q ss_pred -CcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 346 -STGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 346 -~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
.+++.+..+|..|...|...+...|+.+|+..|+..+.
T Consensus 235 ~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 235 HGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 36678888999999988877888999999999988775
No 59
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.79 E-value=4.7e-18 Score=163.16 Aligned_cols=207 Identities=16% Similarity=0.207 Sum_probs=152.3
Q ss_pred cceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-----CCceE
Q 015875 130 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFI 204 (399)
Q Consensus 130 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-----~~~~i 204 (399)
.+.+.+.+.+|++++|++..++.+.+++.. + ..+ +++|+||||+|||++|+++++.+ +..++
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 76 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVL 76 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEE
Confidence 456778889999999999999999999864 1 223 39999999999999999999985 34577
Q ss_pred EEeccchhhhhhchhHHHHHHHHHHHH-------cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 015875 205 RVIGSELVQKYVGEGARMVRELFQMAR-------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 277 (399)
Q Consensus 205 ~v~~s~l~~~~~g~~~~~v~~~f~~a~-------~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 277 (399)
.+++++.. +...++.++..+. ...+.+|+|||+|.+ ....+..|+.++++.
T Consensus 77 ~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~----- 134 (323)
T 1sxj_B 77 ELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM-----------TAGAQQALRRTMELY----- 134 (323)
T ss_dssp EECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS-----------CHHHHHTTHHHHHHT-----
T ss_pred EecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccC-----------CHHHHHHHHHHHhcc-----
Confidence 88776532 1233444444433 234789999999999 566677788888752
Q ss_pred CCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHH
Q 015875 278 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCT 356 (399)
Q Consensus 278 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~ 356 (399)
..++.+|++||.+..+.+++.+ |+ ..+.|++|+.++..++++.++...+.. .+...+.++..+.| +++.+.+++.
T Consensus 135 ~~~~~~il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~ 210 (323)
T 1sxj_B 135 SNSTRFAFACNQSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQ 210 (323)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred CCCceEEEEeCChhhchhHHHh--hc-eEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 4567888999999999999998 87 489999999999999999887655433 22335677777765 4445555554
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHH
Q 015875 357 EAGMFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 357 ~A~~~A~~~~~~~It~ed~~~ai~ 380 (399)
.+.. . ...||.+++.+++.
T Consensus 211 ~~~~---~--~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 211 STVA---G--HGLVNADNVFKIVD 229 (323)
T ss_dssp HHHH---H--HSSBCHHHHHHHHT
T ss_pred HHHh---c--CCCcCHHHHHHHHC
Confidence 4432 1 14588888877654
No 60
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.79 E-value=2.7e-19 Score=176.74 Aligned_cols=237 Identities=20% Similarity=0.215 Sum_probs=147.1
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHH-----------------hhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFV-----------------KLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~-----------------~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i 204 (399)
.|+|++.+++.|..++..+..+..... .-...++.++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999988843222211100 112345678999999999999999999999999999
Q ss_pred EEeccchh-hhhhchh-HHHHHHHHHHHH----cCCCEEEEEecCCcccCCccCCCCC---CChHHHHHHHHHHHHhc-C
Q 015875 205 RVIGSELV-QKYVGEG-ARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVG---GDNEVQRTMLEIVNQLD-G 274 (399)
Q Consensus 205 ~v~~s~l~-~~~~g~~-~~~v~~~f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~---~~~~~~~~l~~ll~~l~-~ 274 (399)
.++++.+. ..+.|.. ...+..++..+. ...++||||||+|.+...+...... ....++..|+++++... .
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3444443 344455554322 2356799999999997654322111 12347888888887321 0
Q ss_pred C---------------CCCCCeEEEEecCC-----------------------------------------CCCCCcccc
Q 015875 275 F---------------DARGNIKVLMATNR-----------------------------------------PDTLDPALL 298 (399)
Q Consensus 275 ~---------------~~~~~v~vI~atn~-----------------------------------------~~~ld~al~ 298 (399)
+ ....++.+|+++|. ...+.|+++
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 0 11256678888762 012557777
Q ss_pred CCCCceeEEEecCCCHHHHHHHHHH----HHh----c---cCCCCccc---HHHHHHHCC--CCcHHHHHHHHHHHHHHH
Q 015875 299 RPGRLDRKVEFGLPDLESRTQIFKI----HTR----T---MNCERDIR---FELLARLCP--NSTGADIRSVCTEAGMFA 362 (399)
Q Consensus 299 r~gRf~~~i~~~~P~~~er~~Il~~----~~~----~---~~~~~~~~---~~~la~~~~--g~sg~di~~l~~~A~~~A 362 (399)
+ ||+..+.|++++.++...|+.. ++. . .+....++ ++.|+.... ....+.+++++..+...+
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 7 9989999999999999998862 111 1 11111122 445555432 346789999998888766
Q ss_pred HHHcC------CCccHHHHHHHHH
Q 015875 363 IRARR------KTVTEKDFLDAVN 380 (399)
Q Consensus 363 ~~~~~------~~It~ed~~~ai~ 380 (399)
..+.. ..||.+++..+..
T Consensus 340 ~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 340 MFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HhhccCCCCCEEEEeHHHhcCCCC
Confidence 55422 2589998876544
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.78 E-value=4.4e-18 Score=167.56 Aligned_cols=222 Identities=14% Similarity=0.156 Sum_probs=159.2
Q ss_pred ccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCC--ceeEeCCCCCcHHHHHHHHHHhc----CCceEEEeccchh
Q 015875 139 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPK--GVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELV 212 (399)
Q Consensus 139 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~--~vLL~GppGtGKT~larala~~~----~~~~i~v~~s~l~ 212 (399)
.+++++|.++.++++..++..... + ..+. +++|+||||||||++++++++.+ +..++.++|+...
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 347799999999999998865221 1 2334 89999999999999999999987 5788999976543
Q ss_pred hh------h----------hch-hHHHHHHHHHHHH-cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcC
Q 015875 213 QK------Y----------VGE-GARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG 274 (399)
Q Consensus 213 ~~------~----------~g~-~~~~v~~~f~~a~-~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~ 274 (399)
.. . .+. .......+...+. ...|.+|+|||+|.+ +...+..+..+++.+..
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEADK 154 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCCC
Confidence 21 0 011 1222222333222 245889999999998 56666666666543321
Q ss_pred CCCCCCeEEEEecCCC---CCCCccccCCCCcee-EEEecCCCHHHHHHHHHHHHhccC---CCCcccHHHHHHHCC---
Q 015875 275 FDARGNIKVLMATNRP---DTLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRTMN---CERDIRFELLARLCP--- 344 (399)
Q Consensus 275 ~~~~~~v~vI~atn~~---~~ld~al~r~gRf~~-~i~~~~P~~~er~~Il~~~~~~~~---~~~~~~~~~la~~~~--- 344 (399)
....++.+|++||.+ ..+++.+.+ ||.. .+.|++++.++..++++..+.... ...+...+.++..+.
T Consensus 155 -~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 155 -LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 231 (389)
T ss_dssp -HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred -CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcc
Confidence 001578899999987 678888877 7765 899999999999999998876421 112234567777773
Q ss_pred -----CCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 345 -----NSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 345 -----g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
+.+++.+..+|+.|...|..++...|+.+++..++..+.
T Consensus 232 ~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 232 PLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 236778999999999999888888999999999988764
No 62
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.78 E-value=5.2e-19 Score=179.89 Aligned_cols=210 Identities=20% Similarity=0.276 Sum_probs=144.9
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CC
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DA 201 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~ 201 (399)
.+...+.++++++|.++.++.+.+.+.. ....++||+||||||||++|+++|+.+ +.
T Consensus 171 ~~~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~ 237 (468)
T 3pxg_A 171 TAIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDK 237 (468)
T ss_dssp HHHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSC
T ss_pred HHHHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCC
Confidence 4456677899999999999999998865 235589999999999999999999986 77
Q ss_pred ceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCe
Q 015875 202 CFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 281 (399)
Q Consensus 202 ~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 281 (399)
+++.++++ ..+.|+.+..++.+|..+....++||||| + ..+.++.|+.++ ..+.+
T Consensus 238 ~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L-------~~g~v 292 (468)
T 3pxg_A 238 RVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL-------ARGEL 292 (468)
T ss_dssp CEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT-------TSSSC
T ss_pred eEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhh-------cCCCE
Confidence 89988887 67788888888999999998888999999 1 223344443333 35678
Q ss_pred EEEEecCCCC-----CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccC----CC-CcccHHHHHHHCC-----CC
Q 015875 282 KVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----CE-RDIRFELLARLCP-----NS 346 (399)
Q Consensus 282 ~vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~----~~-~~~~~~~la~~~~-----g~ 346 (399)
.+|++||.+. .++++++| ||. .+.|+.|+.+++..|++.+...+. .. .+..+..++..+. .+
T Consensus 293 ~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~ 369 (468)
T 3pxg_A 293 QCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRF 369 (468)
T ss_dssp EEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred EEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCc
Confidence 9999999987 68999999 996 699999999999999998876632 11 1222444554433 33
Q ss_pred cHHHHHHHHHHHHHHHHHHcC-CCccHHHHHHHHHHH
Q 015875 347 TGADIRSVCTEAGMFAIRARR-KTVTEKDFLDAVNKV 382 (399)
Q Consensus 347 sg~di~~l~~~A~~~A~~~~~-~~It~ed~~~ai~~v 382 (399)
.+.....++.+|...+..+.. ..-..+++...+..+
T Consensus 370 lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 370 LPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 456777888888776544432 334445555555544
No 63
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=7.4e-18 Score=162.02 Aligned_cols=196 Identities=18% Similarity=0.236 Sum_probs=142.2
Q ss_pred ccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC-----Cce
Q 015875 129 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACF 203 (399)
Q Consensus 129 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~-----~~~ 203 (399)
..+.+.+.+.+|++++|++++++.+..++.. + ...++||+||||||||++|+++++.+. ..+
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~ 79 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNF 79 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCce
Confidence 3577889999999999999999999998864 1 223599999999999999999999863 347
Q ss_pred EEEeccchhhhhhchhHHHHHHHHHH--HHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCe
Q 015875 204 IRVIGSELVQKYVGEGARMVRELFQM--ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 281 (399)
Q Consensus 204 i~v~~s~l~~~~~g~~~~~v~~~f~~--a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 281 (399)
+.+++++.... ......+...... .....+.+|+|||+|.+ +.+.+..|+.+++.. ..++
T Consensus 80 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~le~~-----~~~~ 141 (327)
T 1iqp_A 80 LELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADAL-----------TQDAQQALRRTMEMF-----SSNV 141 (327)
T ss_dssp EEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----TTTE
T ss_pred EEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-----------CHHHHHHHHHHHHhc-----CCCC
Confidence 78887654321 1111112221110 01145789999999999 567788888888763 4567
Q ss_pred EEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHH
Q 015875 282 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAG 359 (399)
Q Consensus 282 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~ 359 (399)
.+|++||.+..+.+++.+ |+. .+.|++|+.++...+++..+...+.. .+...+.++..+.| +.+.+.++++.+.
T Consensus 142 ~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 142 RFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred eEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 899999999889999988 884 89999999999999999888765542 22335667777655 5556656555443
No 64
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.78 E-value=2.4e-18 Score=164.81 Aligned_cols=206 Identities=22% Similarity=0.291 Sum_probs=143.3
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhh---
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK--- 214 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~--- 214 (399)
.+++|++.+++.+...+....... .....+..++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 358999999999999987521000 0011233479999999999999999999987 567999999876432
Q ss_pred --hhchhHH-----HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC------CCCCe
Q 015875 215 --YVGEGAR-----MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARGNI 281 (399)
Q Consensus 215 --~~g~~~~-----~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~~~~v 281 (399)
..|.... ....+........+++|||||+|.+ +...+..|+++++...... ...++
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 161 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRTVDFRNT 161 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCEEECTTE
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCEEECCCc
Confidence 1211000 0012333334455689999999999 7889999999998743111 11367
Q ss_pred EEEEecCC--------------------------CCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhcc-------
Q 015875 282 KVLMATNR--------------------------PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM------- 328 (399)
Q Consensus 282 ~vI~atn~--------------------------~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~------- 328 (399)
++|+|||. ...+++++++ ||+..+.|++|+.+++..|++.++...
T Consensus 162 iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~ 239 (311)
T 4fcw_A 162 VIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK 239 (311)
T ss_dssp EEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred EEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 79999998 4467888988 999999999999999999999877653
Q ss_pred CCCCccc---HHHHHHHCC--CCcHHHHHHHHHHHHHHHH
Q 015875 329 NCERDIR---FELLARLCP--NSTGADIRSVCTEAGMFAI 363 (399)
Q Consensus 329 ~~~~~~~---~~~la~~~~--g~sg~di~~l~~~A~~~A~ 363 (399)
+....++ ++.|+...- ..+.++++++++.+...+.
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 240 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp TCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred CcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 1122233 455555543 4567899999888776553
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.78 E-value=3.2e-19 Score=167.58 Aligned_cols=207 Identities=19% Similarity=0.190 Sum_probs=126.8
Q ss_pred CccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC---CceEEEeccchhhh
Q 015875 138 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELVQK 214 (399)
Q Consensus 138 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~---~~~i~v~~s~l~~~ 214 (399)
.+|++++|.+..++.+.+.+.... ..+.++||+||||||||++|+++++.+. .+|+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 578899999999999988776522 2356899999999999999999999874 68999999886432
Q ss_pred h-----hchhHH----H---HHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CC----C
Q 015875 215 Y-----VGEGAR----M---VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GF----D 276 (399)
Q Consensus 215 ~-----~g~~~~----~---v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~----~ 276 (399)
. .|.... . ....+.. ..+++|||||||.+ +.+.|..|+++++... .. .
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATA-----------PMMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGS-----------CHHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhc-----------CHHHHHHHHHHHHhCCeecCCCccc
Confidence 1 111100 0 0112222 23569999999999 6788999999988632 10 1
Q ss_pred CCCCeEEEEecCCC-------CCCCccccCCCCceeEEEecCCCHHHHH----HHHHHHHh----ccCCC--CcccHHHH
Q 015875 277 ARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRT----QIFKIHTR----TMNCE--RDIRFELL 339 (399)
Q Consensus 277 ~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~----~Il~~~~~----~~~~~--~~~~~~~l 339 (399)
...++.+|+|||.+ ..+.+++++ ||.. +.+..|+.++|. .+++.+++ ..+.. ..++.+.+
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~ 214 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERAR 214 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHH
Confidence 12468899999984 246778877 8843 455566665543 34443332 23332 14555555
Q ss_pred HHHC-CCC--cHHHHHHHHHHHHHHHHHHcCCCccHHHH
Q 015875 340 ARLC-PNS--TGADIRSVCTEAGMFAIRARRKTVTEKDF 375 (399)
Q Consensus 340 a~~~-~g~--sg~di~~l~~~A~~~A~~~~~~~It~ed~ 375 (399)
..+. ..| +.++++++++.+...+ ....|+.+|+
T Consensus 215 ~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 215 ETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 4443 222 3356666666655443 5566777665
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.78 E-value=3.1e-18 Score=184.00 Aligned_cols=197 Identities=20% Similarity=0.274 Sum_probs=143.3
Q ss_pred ccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCC---C-CceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh
Q 015875 141 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP---P-KGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 213 (399)
Q Consensus 141 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~---~-~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~ 213 (399)
++++|++.+++.+.+.+.... .|... | .++||+||||||||++|+++|+.+ +.+|++++|+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRAR--------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHT--------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHH--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 459999999999999987522 12222 2 269999999999999999999987 68999999999987
Q ss_pred hhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC------CCCCCeEEEEec
Q 015875 214 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF------DARGNIKVLMAT 287 (399)
Q Consensus 214 ~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~------~~~~~v~vI~at 287 (399)
.+... ...++..++...++||||||||.+ +.+++..|+++++...-. ....++++|+||
T Consensus 563 ~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 563 KHSTS----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp SCCCC-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred ccccc----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 76554 122333445566789999999998 789999999999873311 123478999999
Q ss_pred CCCCC------------CCccccCCCCceeEEEecCCCHHHHHHHHHHHHhcc-------CCCCccc---HHHHHHHCC-
Q 015875 288 NRPDT------------LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM-------NCERDIR---FELLARLCP- 344 (399)
Q Consensus 288 n~~~~------------ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~-------~~~~~~~---~~~la~~~~- 344 (399)
|.+.. +.|++++ ||+..|.|++|+.+++..|++.++... +....++ .+.|+....
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 705 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVD 705 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCC
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCC
Confidence 97544 7888888 999999999999999999998877543 2222233 345554322
Q ss_pred -CCcHHHHHHHHHHHHHHH
Q 015875 345 -NSTGADIRSVCTEAGMFA 362 (399)
Q Consensus 345 -g~sg~di~~l~~~A~~~A 362 (399)
.++.++++++++.+...+
T Consensus 706 ~~~~~R~L~~~i~~~v~~~ 724 (758)
T 3pxi_A 706 LEYGARPLRRAIQKHVEDR 724 (758)
T ss_dssp TTTTTTTHHHHHHHHTHHH
T ss_pred CCCCChHHHHHHHHHHHHH
Confidence 335578888887765544
No 67
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.77 E-value=8e-18 Score=165.06 Aligned_cols=207 Identities=19% Similarity=0.244 Sum_probs=152.0
Q ss_pred ceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc--------
Q 015875 131 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 202 (399)
Q Consensus 131 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~-------- 202 (399)
+.+.+.+.+|++++|++.+++.+...+.. + ..+..+||+||+|||||++|+++++.+++.
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 73 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCC
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 34567888999999999999999998864 1 334578999999999999999999987542
Q ss_pred ----------------eEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHH
Q 015875 203 ----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 262 (399)
Q Consensus 203 ----------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~ 262 (399)
++.+++..- .....++.++..+.. ..+.+|+|||+|.+ +...+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~ 136 (373)
T 1jr3_A 74 GVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHSF 136 (373)
T ss_dssp SSSHHHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS-----------CHHHH
T ss_pred cccHHHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchh-----------cHHHH
Confidence 233332210 111234555555442 34689999999999 56677
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHH
Q 015875 263 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 341 (399)
Q Consensus 263 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~ 341 (399)
+.++.++++ ...++++|++|+.+..+.+.+++ |+ ..++|++|+.++..++++.+++..+.. .+...+.++.
T Consensus 137 ~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~ 208 (373)
T 1jr3_A 137 NALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 (373)
T ss_dssp HHHHHHHHS-----CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HHHHHHHhc-----CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777777764 34578899999988889999998 87 789999999999999999888765543 2223567888
Q ss_pred HCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 015875 342 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 342 ~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
.+.| +++.+.+++..+...+ ...||.+++.+++
T Consensus 209 ~~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 209 AAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HSSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HCCC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 8866 6778888887775433 3568888876653
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=5.5e-18 Score=182.08 Aligned_cols=197 Identities=20% Similarity=0.264 Sum_probs=144.5
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCC----CCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh---
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--- 214 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~----~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~--- 214 (399)
+++|++++++.+..++.. ...|.. |..++||+||||||||++|+++|+.++.+|++++|+++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 488999999999888764 223442 33479999999999999999999999999999999987653
Q ss_pred ---------hhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC------CCC
Q 015875 215 ---------YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARG 279 (399)
Q Consensus 215 ---------~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~~~ 279 (399)
|+|.... ..+...++...++||||||||.+ +.+++..|+++++...-.. ...
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~ 597 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEECT
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEecC
Confidence 3332211 22344555567899999999998 7889999999998632111 124
Q ss_pred CeEEEEecCCCC-------------------------CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccC-----
Q 015875 280 NIKVLMATNRPD-------------------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----- 329 (399)
Q Consensus 280 ~v~vI~atn~~~-------------------------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~----- 329 (399)
++++|+|||... .++|++++ ||+..|.|++|+.+++..|++.++....
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~ 675 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQ 675 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999753 57788888 9999999999999999999998876431
Q ss_pred --CCCcc---cHHHHHHHC--CCCcHHHHHHHHHHHHHH
Q 015875 330 --CERDI---RFELLARLC--PNSTGADIRSVCTEAGMF 361 (399)
Q Consensus 330 --~~~~~---~~~~la~~~--~g~sg~di~~l~~~A~~~ 361 (399)
....+ ..+.|+... .++..++++.+++.+...
T Consensus 676 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 676 KGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp TTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTH
T ss_pred CCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHH
Confidence 11112 244555433 345578888888777664
No 69
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.75 E-value=5.6e-19 Score=169.81 Aligned_cols=207 Identities=18% Similarity=0.258 Sum_probs=130.6
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhh--
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV-- 216 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~-- 216 (399)
+++|.+.+++++.+.+... ...+.+|||+||||||||++|+++++.. +.+|+.++|+.+.....
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 5899999999999888752 2446789999999999999999999965 67899999987643211
Q ss_pred ---ch----hHH---HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcC--C----CCCCC
Q 015875 217 ---GE----GAR---MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--F----DARGN 280 (399)
Q Consensus 217 ---g~----~~~---~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~----~~~~~ 280 (399)
|. ... .....|..+. .++|||||||.+ +...|..|+++++...- . ....+
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDI-----------SPLMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTC-----------CHHHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccC-----------CHHHHHHHHHHHhcCEeeecCCcccccCC
Confidence 11 001 1112344443 359999999999 67889999998886421 0 11346
Q ss_pred eEEEEecCCC-------CCCCccccCCCCceeEEEecCCCHHHHHH----HHHHHHhc----cCCC-CcccHHHHHHHCC
Q 015875 281 IKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRT----MNCE-RDIRFELLARLCP 344 (399)
Q Consensus 281 v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~----~~~~-~~~~~~~la~~~~ 344 (399)
+.||+|||.. ..+++.|.. ||. .+.+..|++++|.+ +++.++.. .+.. ..++.+.+..+..
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 8899999985 234556665 663 56666666665544 55554433 2211 2345455544443
Q ss_pred CCcHHHHHHHHHHHHHHHHHHcCCCccHHHHH
Q 015875 345 NSTGADIRSVCTEAGMFAIRARRKTVTEKDFL 376 (399)
Q Consensus 345 g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~ 376 (399)
..|+++++.+.+.....+.......|+.+|+.
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~~~~~i~~~~l~ 246 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLLTGEYISERELP 246 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHCCSSSBCGGGSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccHHhhh
Confidence 33344444444433333333355667777664
No 70
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=1.8e-17 Score=161.67 Aligned_cols=196 Identities=13% Similarity=0.189 Sum_probs=139.8
Q ss_pred ccceecCCCCccccccCcHHHHHHHHHHH-hcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC------
Q 015875 129 MMTVEEKPDVTYNDVGGCKEQIEKMREVV-ELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA------ 201 (399)
Q Consensus 129 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i-~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~------ 201 (399)
++|++++.+.+|++++|++.+++.++.++ .. + ..+. ++|+||+|+|||++++++++.+..
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i 68 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRL 68 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeE
Confidence 36788899999999999999999998887 32 1 2344 999999999999999999996411
Q ss_pred -----------------------ceEEEeccchhhhhhchhHHHHHHHHHHHH--------------cCCCEEEEEecCC
Q 015875 202 -----------------------CFIRVIGSELVQKYVGEGARMVRELFQMAR--------------SKKACIVFFDEVD 244 (399)
Q Consensus 202 -----------------------~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~--------------~~~p~il~iDEiD 244 (399)
.++.++++.... .....+++.+..+. ...|.+|+|||++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~ 144 (354)
T 1sxj_E 69 KIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEAN 144 (354)
T ss_dssp -----------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTT
T ss_pred EecceeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcc
Confidence 123333222100 01112344444332 2357799999999
Q ss_pred cccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHH
Q 015875 245 AIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIH 324 (399)
Q Consensus 245 ~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~ 324 (399)
.+ +...++.++.++++. ..++.+|++||.+..+.+++++ |+ ..+.|++|+.++..++++..
T Consensus 145 ~L-----------~~~~~~~L~~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 145 SL-----------TKDAQAALRRTMEKY-----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp SS-----------CHHHHHHHHHHHHHS-----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHH
T ss_pred cc-----------CHHHHHHHHHHHHhh-----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHH
Confidence 98 677888888888864 3467899999999999999998 88 88999999999999999988
Q ss_pred HhccCCC-C-cccHHHHHHHCCCCcHHHHHHHHHHHHHH
Q 015875 325 TRTMNCE-R-DIRFELLARLCPNSTGADIRSVCTEAGMF 361 (399)
Q Consensus 325 ~~~~~~~-~-~~~~~~la~~~~g~sg~di~~l~~~A~~~ 361 (399)
+...++. . +..++.++..+.| +.+++.++++.+...
T Consensus 206 ~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 206 VTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp HHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred HHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 8765543 2 3446778877755 555666666655543
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.75 E-value=3e-17 Score=178.41 Aligned_cols=207 Identities=22% Similarity=0.286 Sum_probs=140.9
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CCc
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DAC 202 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~~ 202 (399)
+...+.++++++|.++.++++.+++.. ..+.+++|+||||||||++|+++|+.+ +.+
T Consensus 162 ~~~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~ 228 (854)
T 1qvr_A 162 RLAAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKR 228 (854)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCE
T ss_pred HHHhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCe
Confidence 345677899999999999999888754 345689999999999999999999987 789
Q ss_pred eEEEeccchh--hhhhchhHHHHHHHHHHHHcC-CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 015875 203 FIRVIGSELV--QKYVGEGARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 279 (399)
Q Consensus 203 ~i~v~~s~l~--~~~~g~~~~~v~~~f~~a~~~-~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 279 (399)
++.++++.+. ..+.|+....++.+|..+... .++||||||+|.+.+.+.. .+..+..+.+..+++ .+
T Consensus 229 ~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~~~~~~~L~~~l~-------~~ 298 (854)
T 1qvr_A 229 IVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVDAGNMLKPALA-------RG 298 (854)
T ss_dssp EEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH-------TT
T ss_pred EEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cchHHHHHHHHHHHh-------CC
Confidence 9999999887 467888889999999988875 6899999999999765422 123444555666654 35
Q ss_pred CeEEEEecCCCC----CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccC----CC-CcccHHHHHHH-----CCC
Q 015875 280 NIKVLMATNRPD----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----CE-RDIRFELLARL-----CPN 345 (399)
Q Consensus 280 ~v~vI~atn~~~----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~----~~-~~~~~~~la~~-----~~g 345 (399)
++.+|++||.++ .+++++.| ||.. +.|+.|+.+++.+|++.++.... .. .+..+..++.. +..
T Consensus 299 ~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~ 375 (854)
T 1qvr_A 299 ELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITER 375 (854)
T ss_dssp CCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSS
T ss_pred CeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccc
Confidence 677999998763 57999999 9975 99999999999999987765432 11 12223444443 345
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 015875 346 STGADIRSVCTEAGMFAIRA 365 (399)
Q Consensus 346 ~sg~di~~l~~~A~~~A~~~ 365 (399)
+.+.....++.+|...+...
T Consensus 376 ~lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 376 RLPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp CTHHHHHHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHHHhh
Confidence 67788888888887766543
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.75 E-value=6.3e-18 Score=181.63 Aligned_cols=193 Identities=21% Similarity=0.290 Sum_probs=138.8
Q ss_pred eecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CC
Q 015875 132 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DA 201 (399)
Q Consensus 132 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~ 201 (399)
.+...+..+++++|.++.++++.+++.. ..+.++||+||||||||++|+++|+.+ +.
T Consensus 171 ~~~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~ 237 (758)
T 3pxi_A 171 TAIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDK 237 (758)
T ss_dssp HHHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSC
T ss_pred HHHHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCC
Confidence 3456677889999999999999998864 345689999999999999999999986 78
Q ss_pred ceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCe
Q 015875 202 CFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 281 (399)
Q Consensus 202 ~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 281 (399)
+++.+++ ..++.|+++..++.+|..+....++||||| + ....++.++..+ ..+.+
T Consensus 238 ~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~~~~~~~L~~~l-------~~~~v 292 (758)
T 3pxi_A 238 RVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL-------ARGEL 292 (758)
T ss_dssp CEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT-------TSSSC
T ss_pred eEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------chhHHHHHHHHH-------hcCCE
Confidence 8888887 556788888899999999998889999999 1 222333333332 35679
Q ss_pred EEEEecCCCC-----CCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCc--c---cHHHHHHH-----CCCC
Q 015875 282 KVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD--I---RFELLARL-----CPNS 346 (399)
Q Consensus 282 ~vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~--~---~~~~la~~-----~~g~ 346 (399)
.+|++||... .++++++| || ..|.|+.|+.+++.+||+.+...+....+ + .+..++.. ..++
T Consensus 293 ~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~ 369 (758)
T 3pxi_A 293 QCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRF 369 (758)
T ss_dssp EEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred EEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCc
Confidence 9999999987 79999999 99 67999999999999999987766432211 2 23344433 3456
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 015875 347 TGADIRSVCTEAGMFAIRA 365 (399)
Q Consensus 347 sg~di~~l~~~A~~~A~~~ 365 (399)
.++....++.+|...+...
T Consensus 370 ~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 370 LPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhh
Confidence 7778888888887766544
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.74 E-value=4.5e-18 Score=173.57 Aligned_cols=205 Identities=18% Similarity=0.163 Sum_probs=137.4
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC--CceEEEecc-----chhhh
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGS-----ELVQK 214 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~--~~~i~v~~s-----~l~~~ 214 (399)
.|+|.+++++.+..++.. +.++||+||||||||++|+++|+.++ .+|..+.+. ++++.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 389999999888777643 35899999999999999999999884 456655553 22222
Q ss_pred hhchhHHHHHHHHHHHHcC---CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc----CCC-CCCCeEEEEe
Q 015875 215 YVGEGARMVRELFQMARSK---KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GFD-ARGNIKVLMA 286 (399)
Q Consensus 215 ~~g~~~~~v~~~f~~a~~~---~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~~~-~~~~v~vI~a 286 (399)
+.+..... ...|..+... .++|||||||+.+ +...+..|++++++-. +.. ..+..++|+|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 21111111 1222222222 4669999999987 7889999999987521 111 1122246888
Q ss_pred cCCCCC---CCccccCCCCceeEEEecCCCH-HHHHHHHHHHHhc-------------------------cCCCCcccHH
Q 015875 287 TNRPDT---LDPALLRPGRLDRKVEFGLPDL-ESRTQIFKIHTRT-------------------------MNCERDIRFE 337 (399)
Q Consensus 287 tn~~~~---ld~al~r~gRf~~~i~~~~P~~-~er~~Il~~~~~~-------------------------~~~~~~~~~~ 337 (399)
||++.. +.+++++ ||...+.++.|+. +++..|++.+... ..+.++ -.+
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~-v~e 232 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH-VFE 232 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH-HHH
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH-HHH
Confidence 886322 3458888 9988999999987 6788888765421 111111 123
Q ss_pred HHHHHC---------CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHH
Q 015875 338 LLARLC---------PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFL 376 (399)
Q Consensus 338 ~la~~~---------~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~ 376 (399)
.++... .|.|++.+..+++.|...|..+++..|+.+|+.
T Consensus 233 ~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 233 LIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 343332 478999999999999999999999999999987
No 74
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.74 E-value=6.5e-18 Score=148.59 Aligned_cols=155 Identities=20% Similarity=0.338 Sum_probs=116.8
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----------CCce
Q 015875 134 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACF 203 (399)
Q Consensus 134 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----------~~~~ 203 (399)
...+.+|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred HHhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 34566889999999999999888754 345689999999999999999999986 7788
Q ss_pred EEEeccchhh--hhhchhHHHHHHHHHHHHcC-CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 015875 204 IRVIGSELVQ--KYVGEGARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 280 (399)
Q Consensus 204 i~v~~s~l~~--~~~g~~~~~v~~~f~~a~~~-~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 280 (399)
+.+++..+.. .+.+.....+..++..+... .+.+|||||+|.+...+... ....+..+.+..+++ ..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~~~~~~~l~~~~~-------~~~ 152 (187)
T 2p65_A 82 VSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGALDAGNILKPMLA-------RGE 152 (187)
T ss_dssp EEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTSCCTHHHHHHHHH-------TTC
T ss_pred EEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccchHHHHHHHHHHh-------cCC
Confidence 8888877653 24455566677777776654 67899999999997554311 112344555555554 356
Q ss_pred eEEEEecCCCC-----CCCccccCCCCceeEEEecCCC
Q 015875 281 IKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPD 313 (399)
Q Consensus 281 v~vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~ 313 (399)
+.+|++||.+. .+++++++ ||. .+.++.|+
T Consensus 153 ~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 153 LRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp SCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred eeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 78999998764 68999999 997 59999886
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=7.4e-17 Score=157.11 Aligned_cols=213 Identities=22% Similarity=0.259 Sum_probs=146.3
Q ss_pred cccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC-----c
Q 015875 128 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-----C 202 (399)
Q Consensus 128 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~-----~ 202 (399)
...|.+++.+.+|+++.|++.+++.|...+.. | ..| +++|+||||||||++|+++|+.+.. .
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~ 78 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNM 78 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence 34678889999999999999999999998874 2 223 3999999999999999999998632 3
Q ss_pred eEEEeccchhhhhhchhHHHHHHHHHHHH------cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC
Q 015875 203 FIRVIGSELVQKYVGEGARMVRELFQMAR------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD 276 (399)
Q Consensus 203 ~i~v~~s~l~~~~~g~~~~~v~~~f~~a~------~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~ 276 (399)
++.+++++..+ ...++..+.... ...+.+++|||+|.+ ....++.|+.++++.
T Consensus 79 ~~~~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~---- 137 (340)
T 1sxj_C 79 VLELNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-----------TNAAQNALRRVIERY---- 137 (340)
T ss_dssp EEEECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-----------CHHHHHHHHHHHHHT----
T ss_pred EEEEcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhcC----
Confidence 66666654211 223333333222 123689999999999 566788888888763
Q ss_pred CCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHH
Q 015875 277 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVC 355 (399)
Q Consensus 277 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~ 355 (399)
..++.+|++||.+..+.+++++ |+ ..+.|+.++.++..+++...+...++. .+.....++..+.| ..+.+.+++
T Consensus 138 -~~~~~~il~~n~~~~i~~~i~s--R~-~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l 212 (340)
T 1sxj_C 138 -TKNTRFCVLANYAHKLTPALLS--QC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVL 212 (340)
T ss_dssp -TTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHT
T ss_pred -CCCeEEEEEecCccccchhHHh--hc-eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 3567788899999999999999 88 488999999999999888887544332 22235566666655 333333333
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHH
Q 015875 356 TEAGMFAIRARRKTVTEKDFLDAV 379 (399)
Q Consensus 356 ~~A~~~A~~~~~~~It~ed~~~ai 379 (399)
+.+...+...+...||.+++.+++
T Consensus 213 ~~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 213 QSCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHHHhcCCcccccccHHHHHHHh
Confidence 333222211112358887776543
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.69 E-value=6.5e-17 Score=175.84 Aligned_cols=203 Identities=23% Similarity=0.337 Sum_probs=143.4
Q ss_pred cccccCcHHHHHHHHHHHhcCCCChhHHHhhCCC----CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchh
Q 015875 140 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 212 (399)
Q Consensus 140 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~----~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~ 212 (399)
+++++|++++++.+...+... ..|.. |..++||+||||||||++|+++|+.+ +.+|+.++|+++.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 456999999999999998652 11221 22479999999999999999999988 7899999998875
Q ss_pred hh-----hhchhHHH-----HHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC-----
Q 015875 213 QK-----YVGEGARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA----- 277 (399)
Q Consensus 213 ~~-----~~g~~~~~-----v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~----- 277 (399)
.. ..|..... .+.+....+...+++|||||||.+ +.+++..|+++++...-.+.
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~g~~v 697 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSHGRTV 697 (854)
T ss_dssp SSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSSSCCE
T ss_pred chhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCCCCEe
Confidence 43 12221111 123444445566789999999998 78899999999886421111
Q ss_pred -CCCeEEEEecCCC--------------------------CCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccC-
Q 015875 278 -RGNIKVLMATNRP--------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN- 329 (399)
Q Consensus 278 -~~~v~vI~atn~~--------------------------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~- 329 (399)
-.+++||+|||.. ..+.|+|++ ||+..+.|++|+.+++..|++.++....
T Consensus 698 d~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~ 775 (854)
T 1qvr_A 698 DFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRA 775 (854)
T ss_dssp ECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 1367899999972 346777877 9999999999999999999988776321
Q ss_pred ------CCCccc---HHHHHHHCC--CCcHHHHHHHHHHHHHHHH
Q 015875 330 ------CERDIR---FELLARLCP--NSTGADIRSVCTEAGMFAI 363 (399)
Q Consensus 330 ------~~~~~~---~~~la~~~~--g~sg~di~~l~~~A~~~A~ 363 (399)
....++ .+.|+.... .++.++++++++.+...+.
T Consensus 776 ~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 776 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHH
T ss_pred HHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH
Confidence 111233 445555443 4567899999888876553
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.68 E-value=3.2e-17 Score=171.11 Aligned_cols=226 Identities=18% Similarity=0.163 Sum_probs=145.7
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEE----eccchhhhh--
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV----IGSELVQKY-- 215 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v----~~s~l~~~~-- 215 (399)
.|.|++.+++.+...+... .+..+....++...++||+||||||||++|+++|+.++..++.. ++..+....
T Consensus 296 ~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred hhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 4788888776664333221 00000001123344899999999999999999999886554432 122222111
Q ss_pred ---hchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEE
Q 015875 216 ---VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVL 284 (399)
Q Consensus 216 ---~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI 284 (399)
.|..... ...+..| ..+|+||||||.+ +.+.+..|++++++-. +. ....++.||
T Consensus 374 ~~~~g~~~~~-~G~l~~A---~~gil~IDEid~l-----------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 374 EKGTGEYYLE-AGALVLA---DGGIAVIDEIDKM-----------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp GGGTSSCSEE-ECHHHHH---SSSEECCTTTTCC-----------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred cccccccccc-CCeeEec---CCCcEEeehhhhC-----------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 1110000 0112222 3459999999999 6778999999988532 11 123468899
Q ss_pred EecCCCC-------------CCCccccCCCCcee-EEEecCCCHHHHHHHHHHHHhccCC--------------------
Q 015875 285 MATNRPD-------------TLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRTMNC-------------------- 330 (399)
Q Consensus 285 ~atn~~~-------------~ld~al~r~gRf~~-~i~~~~P~~~er~~Il~~~~~~~~~-------------------- 330 (399)
+|||++. .+++++++ |||. .+..+.|+.+ ...|++..+.....
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 9999876 89999999 9986 5555667766 77777766543210
Q ss_pred ------CCcccHHHHHHH--------------CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhcc
Q 015875 331 ------ERDIRFELLARL--------------CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQ 387 (399)
Q Consensus 331 ------~~~~~~~~la~~--------------~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~~~ 387 (399)
..+...+.|... ..+.|++.+.++++.|...|..+.+..|+.+|+.+|+.-+..+..
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~sl~ 592 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLFLE 592 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHHHH
Confidence 011122334433 246788999999999999999999999999999999988765543
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.65 E-value=4.3e-17 Score=139.12 Aligned_cols=112 Identities=18% Similarity=0.262 Sum_probs=88.1
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHH
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGAR 221 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~ 221 (399)
+++|.+++++++++.+.... ..+.+|||+||||||||++|+++++... +|+.++|+.+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 48899999999999887521 3456899999999999999999999888 99999998876543
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 222 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 222 ~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
....+..+. +++|||||+|.+ +.+.|..++++++... ..++.+|+|||.+
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l-----------~~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQY-----------SRNIQTGITFIIGKAE----RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTC-----------CHHHHHHHHHHHHHHT----TTTCEEEEEEEEC
T ss_pred -hhhHHHhCC---CCeEEEeChHHC-----------CHHHHHHHHHHHHhCC----CCCEEEEEecCCC
Confidence 344555543 459999999999 6788999999988753 4568899999864
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.65 E-value=2.6e-16 Score=134.49 Aligned_cols=112 Identities=16% Similarity=0.252 Sum_probs=86.0
Q ss_pred cccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhch
Q 015875 142 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE 218 (399)
Q Consensus 142 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~ 218 (399)
+++|.+..++++.+.+... ...+.+|||+||||||||++|+++++.. +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 5889999999999888652 2345689999999999999999999976 77899 999887554
Q ss_pred hHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 219 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 219 ~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
......+..+. .++|||||||.+ +.+.|..+++++.. ...++.+|+|||.+
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l-----------~~~~q~~Ll~~l~~-----~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHL-----------TREQQYHLVQLQSQ-----EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGS-----------CHHHHHHHHHHHHS-----SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHC-----------CHHHHHHHHHHHhh-----cCCCEEEEEECCcC
Confidence 12334455553 359999999999 77888888888842 24467799999974
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.63 E-value=1.3e-15 Score=159.46 Aligned_cols=221 Identities=22% Similarity=0.323 Sum_probs=146.0
Q ss_pred ecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc---eEEEecc
Q 015875 133 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVIGS 209 (399)
Q Consensus 133 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~---~i~v~~s 209 (399)
...++.+|++++|++.+++.+...+.. ..+++|+||||||||++|+++|+.+... .+.+.+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred ccccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 346778899999999999999888764 3589999999999999999999977432 2222111
Q ss_pred chhh--h---h--hchhH-------------------------------------------------HHHHHHHHH----
Q 015875 210 ELVQ--K---Y--VGEGA-------------------------------------------------RMVRELFQM---- 229 (399)
Q Consensus 210 ~l~~--~---~--~g~~~-------------------------------------------------~~v~~~f~~---- 229 (399)
.... . + .+... .....+|..
T Consensus 98 ~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~ 177 (604)
T 3k1j_A 98 PEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD 177 (604)
T ss_dssp TTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC
T ss_pred cccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec
Confidence 1100 0 0 00000 001111110
Q ss_pred -------------------HHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhc----C------------
Q 015875 230 -------------------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----G------------ 274 (399)
Q Consensus 230 -------------------a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~------------ 274 (399)
+....+++|||||++.+ +...|..|+++|+.-. +
T Consensus 178 ~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~ 246 (604)
T 3k1j_A 178 PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRT 246 (604)
T ss_dssp CC----CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBC
T ss_pred hhhcCCccccccccccCceeeecCCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCCC
Confidence 11134569999999998 7889999999998632 1
Q ss_pred CCCCCCeEEEEecCCC--CCCCccccCCCCce---eEEEecC--C-CHHHHHHHHHHHHhccC---CCCccc---HHHHH
Q 015875 275 FDARGNIKVLMATNRP--DTLDPALLRPGRLD---RKVEFGL--P-DLESRTQIFKIHTRTMN---CERDIR---FELLA 340 (399)
Q Consensus 275 ~~~~~~v~vI~atn~~--~~ld~al~r~gRf~---~~i~~~~--P-~~~er~~Il~~~~~~~~---~~~~~~---~~~la 340 (399)
.....+++||++||+. ..++++|++ ||. ..+.|+. + +.+....+++...+... ....++ +..|.
T Consensus 247 ~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li 324 (604)
T 3k1j_A 247 EPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIV 324 (604)
T ss_dssp SCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHH
T ss_pred CccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHH
Confidence 0112368899999986 679999999 986 4556553 2 34555666654443222 112333 33333
Q ss_pred HH---CCCC------cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 015875 341 RL---CPNS------TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNK 381 (399)
Q Consensus 341 ~~---~~g~------sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~ 381 (399)
.. ..|- +.+++.++++.|...|..+++..|+.+|+.+|+..
T Consensus 325 ~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 325 REAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 32 2442 68999999999999998889999999999999864
No 81
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.61 E-value=5e-17 Score=160.23 Aligned_cols=272 Identities=16% Similarity=0.202 Sum_probs=164.1
Q ss_pred cccchhhHHhhhhcCCceeeeeeeecCCCCcCCceEEeeccc-ceEEEecCCCCCCCCCCCCceeeecCccceeeccCCC
Q 015875 43 QWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQI-AKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPP 121 (399)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 121 (399)
-+++.+.++...+..|+++.|.....+. .+.....| ..|+.|+ ++.+.+..--+-.+.. ..+..
T Consensus 59 G~ell~~lr~~~~~~pvI~lT~~~~~~~------~~~a~~~Ga~~yl~KP---~~~~~L~~~i~~~l~~------~~~~~ 123 (368)
T 3dzd_A 59 GVNFIDFIKENSPDSVVIVITGHGSVDT------AVKAIKKGAYEFLEKP---FSVERFLLTIKHAFEE------YSKKA 123 (368)
T ss_dssp TTTHHHHHHHHCTTCEEEEEECSSCCHH------HHHHHHHTCCEEEESS---CCHHHHHHHHHHHHHH------HSCCC
T ss_pred HHHHHHHHHhhCCCCeEEEEeCCCCHHH------HHHHHhcCcceEEeCC---CCHHHHHHHHHHHHHH------hhhhh
Confidence 3567777887788889888877553321 23344555 6788888 5555443200000000 00000
Q ss_pred CCCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCC
Q 015875 122 KIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA 201 (399)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~ 201 (399)
. . .....++|.+..+.++.+.+... ......++++|++||||+++|++++...+.
T Consensus 124 ~---~-----------~~~~~~ig~s~~~~~~~~~~~~~-----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r 178 (368)
T 3dzd_A 124 P---P-----------QEEIEFVGEHPKILEIKRLIPKI-----------AKSKAPVLITGESGTGKEIVARLIHRYSGR 178 (368)
T ss_dssp C---C-----------CCCCCCCCCSHHHHHHHHHHHHH-----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred c---c-----------cccccccccchHHHHHHhhhhhh-----------hccchhheEEeCCCchHHHHHHHHHHhccc
Confidence 0 0 01135889999988888777541 123457999999999999999999987643
Q ss_pred --ceEEEeccchhhhh---------hchhHHH---HHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHH
Q 015875 202 --CFIRVIGSELVQKY---------VGEGARM---VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLE 267 (399)
Q Consensus 202 --~~i~v~~s~l~~~~---------~g~~~~~---v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ 267 (399)
.|+.++|..+.... .|..... ....|+.|. .++||||||+.+ +...|..|++
T Consensus 179 ~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l-----------~~~~Q~~Ll~ 244 (368)
T 3dzd_A 179 KGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGEL-----------DQRVQAKLLR 244 (368)
T ss_dssp CSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGS-----------CHHHHHHHHH
T ss_pred cCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcC---CCeEEecChhhC-----------CHHHHHHHHH
Confidence 39999998753321 1111100 112344443 349999999999 8999999999
Q ss_pred HHHHhc--CCCC----CCCeEEEEecCCC-------CCCCccccCCCCceeEEEecCCCHHHHHH----HHHHHHh----
Q 015875 268 IVNQLD--GFDA----RGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTR---- 326 (399)
Q Consensus 268 ll~~l~--~~~~----~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~---- 326 (399)
+++.-. .... ..++.+|+|||.. ..+.+.|.. |+ ..+.+..|++++|.+ ++..+++
T Consensus 245 ~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~ 321 (368)
T 3dzd_A 245 VLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RL-SVFQIYLPPLRERGKDVILLAEYFLKKFAK 321 (368)
T ss_dssp HHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HH-TSEEEECCCGGGSTTHHHHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--Hh-CCeEEeCCChhhchhhHHHHHHHHHHHHHH
Confidence 998732 1111 2368899999963 122233333 33 256666777777643 4444443
Q ss_pred ccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCcc
Q 015875 327 TMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVT 371 (399)
Q Consensus 327 ~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It 371 (399)
..+.. ..++.+.+..+....|+++++.+-+.....+.......|+
T Consensus 322 ~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~~~~~i~ 367 (368)
T 3dzd_A 322 EYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILCEGEVIK 367 (368)
T ss_dssp HTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTCCSSBCC
T ss_pred HcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCCCccC
Confidence 33322 4577788877777667777777766665555554555454
No 82
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.61 E-value=3.7e-16 Score=155.07 Aligned_cols=292 Identities=16% Similarity=0.196 Sum_probs=172.3
Q ss_pred cccchhhHHhhhhcCCceeeeeeeecCCCCcCCceEEeeccc-ceEEEecCCCCCCCCCCCCceeeecCccceeeccCCC
Q 015875 43 QWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQI-AKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPP 121 (399)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 121 (399)
-+++.+.++...+..|+++.+.....+. .+..+..| .+|+.++ ++.+.+..--+-.+..... ..
T Consensus 59 G~ell~~lr~~~~~~pvIvlT~~~~~~~------~~~a~~~Ga~dyl~KP---~~~~~L~~~i~~~l~~~~l--~~---- 123 (387)
T 1ny5_A 59 GLEILKWIKERSPETEVIVITGHGTIKT------AVEAMKMGAYDFLTKP---CMLEEIELTINKAIEHRKL--RK---- 123 (387)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEETTCHHH------HHHHHTTTCCEEEEES---CCHHHHHHHHHHHHHHHHH--HH----
T ss_pred HHHHHHHHHhhCCCCcEEEEeCCCCHHH------HHHHHhcCceEEecCC---CCHHHHHHHHHHHHHHHHH--HH----
Confidence 3566777777777889988877553322 23344555 6788887 5544443200000000000 00
Q ss_pred CCCCcccccceecCCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc--
Q 015875 122 KIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-- 199 (399)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-- 199 (399)
....+..... ..+..++|.+..++++.+.+... ......|+|+|++||||+++|++++...
T Consensus 124 ----~~~~l~~~~~--~~~~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r 186 (387)
T 1ny5_A 124 ----ENELLRREKD--LKEEEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDR 186 (387)
T ss_dssp ----HHHHHHHHHH--TTCCCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred ----HHHHhhhhhh--hcchhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCC
Confidence 0000000000 11456888899999888887651 2345679999999999999999999865
Q ss_pred -CCceEEEeccchhhhhh---------chhHHH---HHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHH
Q 015875 200 -DACFIRVIGSELVQKYV---------GEGARM---VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML 266 (399)
Q Consensus 200 -~~~~i~v~~s~l~~~~~---------g~~~~~---v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~ 266 (399)
+.+|+.++|+.+..... |..... ....|+.|. .++||||||+.+ +.+.|..|+
T Consensus 187 ~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l-----------~~~~q~~Ll 252 (387)
T 1ny5_A 187 SKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGEL-----------SLEAQAKLL 252 (387)
T ss_dssp TTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGC-----------CHHHHHHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhC-----------CHHHHHHHH
Confidence 47899999987643211 111000 112344443 359999999999 899999999
Q ss_pred HHHHHhc--CCCC----CCCeEEEEecCCC--CCCCccccCCCCcee--EEEecCCCHHHHHH----HHHHHH----hcc
Q 015875 267 EIVNQLD--GFDA----RGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ----IFKIHT----RTM 328 (399)
Q Consensus 267 ~ll~~l~--~~~~----~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~----Il~~~~----~~~ 328 (399)
++++.-. .... ..++.+|+|||.. ..+....+|++.|++ .+.+..|++++|.+ ++..++ ++.
T Consensus 253 ~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~ 332 (387)
T 1ny5_A 253 RVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKY 332 (387)
T ss_dssp HHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHc
Confidence 9998732 1111 2368899999974 112222223222222 56677888877754 333333 333
Q ss_pred CCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 015875 329 NCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 380 (399)
Q Consensus 329 ~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~ 380 (399)
+.. ..++.+.+..+...-|+++++.+-+.....+.......|+.+|+...++
T Consensus 333 ~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~~~i~~~~l~~~~~ 385 (387)
T 1ny5_A 333 AKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLVN 385 (387)
T ss_dssp TCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCSSEECHHHHHHHC-
T ss_pred CCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCCCcCcHHHCcHhhh
Confidence 332 3466677776665555656666555555555555677899999875443
No 83
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=7.5e-14 Score=138.37 Aligned_cols=229 Identities=14% Similarity=0.130 Sum_probs=150.1
Q ss_pred ccccccCcHHHHHHHHHHH-hcCCCChhHHHhhCC-CCCCceeE--eCCCCCcHHHHHHHHHHhc---------CCceEE
Q 015875 139 TYNDVGGCKEQIEKMREVV-ELPMLHPEKFVKLGI-DPPKGVLC--YGPPGTGKTLLARAVANRT---------DACFIR 205 (399)
Q Consensus 139 ~~~~i~G~~~~~~~l~~~i-~~~~~~~~~~~~~g~-~~~~~vLL--~GppGtGKT~larala~~~---------~~~~i~ 205 (399)
..++++|.+..+++|.+.+ ..... +. ..+..++| +||||+|||++++++++.+ +..++.
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 3467999999999999887 53111 10 23557999 9999999999999999875 456788
Q ss_pred Eeccch------hhhh---h-------ch-hHHHHHHHHHHHH-cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHH
Q 015875 206 VIGSEL------VQKY---V-------GE-GARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLE 267 (399)
Q Consensus 206 v~~s~l------~~~~---~-------g~-~~~~v~~~f~~a~-~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ 267 (399)
++|... .... . +. .......+..... ...|.+|+|||+|.+...+. .+.+....+.+
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~~~~~l~~l~~ 166 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----IAAEDLYTLLR 166 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----SCHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----cchHHHHHHHH
Confidence 887432 1110 0 11 1122233333222 35588999999999853210 12445555555
Q ss_pred HHHHhcCCCCCCCeEEEEecCCCC---CCC---ccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCC---CcccHHH
Q 015875 268 IVNQLDGFDARGNIKVLMATNRPD---TLD---PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE---RDIRFEL 338 (399)
Q Consensus 268 ll~~l~~~~~~~~v~vI~atn~~~---~ld---~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~---~~~~~~~ 338 (399)
++..+..-....++.+|++|+.++ .++ +.+.+ ++...+.+++++.++..+++..++...... .+.....
T Consensus 167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 1w5s_A 167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLEL 244 (412)
T ss_dssp HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHH
T ss_pred HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 555432000025788888887654 233 55656 555569999999999999998776532221 2223566
Q ss_pred HHHHCC------CCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 015875 339 LARLCP------NSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 339 la~~~~------g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~ 383 (399)
++..+. | +++.+..+|..|...|..++...++.+++..++....
T Consensus 245 i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 245 ISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 777776 5 6778999999998888887888899999998887643
No 84
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.56 E-value=1e-14 Score=114.00 Aligned_cols=87 Identities=71% Similarity=1.194 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhccccCCC
Q 015875 313 DLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFSAT 392 (399)
Q Consensus 313 ~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~~~~~~~~ 392 (399)
|.++|.+||+.|++++++..+++++.||..|+||||+||.++|++|.+.|+++....|+.+||..|++++..+..+.+..
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~~ 81 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSST 81 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC--------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccch
Confidence 56799999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCC
Q 015875 393 PKYMVYN 399 (399)
Q Consensus 393 ~~~~~~~ 399 (399)
++|..||
T Consensus 82 ~~y~~w~ 88 (88)
T 3vlf_B 82 SRYMQYN 88 (88)
T ss_dssp -------
T ss_pred hHHhccC
Confidence 9999998
No 85
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.54 E-value=1.2e-13 Score=134.18 Aligned_cols=174 Identities=14% Similarity=0.143 Sum_probs=122.1
Q ss_pred cCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCc---------------------
Q 015875 144 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------------------- 202 (399)
Q Consensus 144 ~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~--------------------- 202 (399)
.-+++.++.+...+.. -+.+..+||+||||+|||++|+++|+.+.+.
T Consensus 5 pw~~~~~~~l~~~i~~------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~ 72 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQA------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGT 72 (334)
T ss_dssp GGGHHHHHHHHHHHHT------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHc------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 3457778888887764 1446679999999999999999999987542
Q ss_pred ---eEEEeccchhhhhhchhHHHHHHHHHHHHc----CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC
Q 015875 203 ---FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF 275 (399)
Q Consensus 203 ---~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~----~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~ 275 (399)
++.++..+- ....+...++++++.+.. ..+.|++|||+|.+ +.+.++.|+..+++
T Consensus 73 ~~d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l-----------~~~a~naLLk~lEe---- 134 (334)
T 1a5t_A 73 HPDYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL-----------TDAAANALLKTLEE---- 134 (334)
T ss_dssp CTTEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-----------CHHHHHHHHHHHTS----
T ss_pred CCCEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhc-----------CHHHHHHHHHHhcC----
Confidence 233332100 001233456777776653 34679999999999 56667777766653
Q ss_pred CCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHH
Q 015875 276 DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVC 355 (399)
Q Consensus 276 ~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~ 355 (399)
+..++++|++||.++.+.+++++ |+ ..+.|++|+.++..+++.... .+ .+...+.++..+.| +++.+.+++
T Consensus 135 -p~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l 205 (334)
T 1a5t_A 135 -PPAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALF 205 (334)
T ss_dssp -CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTT
T ss_pred -CCCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHh
Confidence 45678899999999999999999 88 689999999999999888765 22 22335667777766 444444444
Q ss_pred H
Q 015875 356 T 356 (399)
Q Consensus 356 ~ 356 (399)
+
T Consensus 206 ~ 206 (334)
T 1a5t_A 206 Q 206 (334)
T ss_dssp S
T ss_pred c
Confidence 3
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.48 E-value=2.7e-14 Score=161.78 Aligned_cols=155 Identities=19% Similarity=0.156 Sum_probs=111.9
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCC----------hhHHHh------hCCC----------CCCc--eeEeCCCCC
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLH----------PEKFVK------LGID----------PPKG--VLCYGPPGT 186 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~----------~~~~~~------~g~~----------~~~~--vLL~GppGt 186 (399)
.+.++|++++|++++++++.+.+.+++.+ ++.|.. .|+. +|+| +|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 45599999999999999999999998844 667776 3333 4455 999999999
Q ss_pred cHHHHHHHHHHhc---CCceEEEeccchh------------hhhhch----hHHHHHHHHHHHHcCCCEEEEEecCCccc
Q 015875 187 GKTLLARAVANRT---DACFIRVIGSELV------------QKYVGE----GARMVRELFQMARSKKACIVFFDEVDAIG 247 (399)
Q Consensus 187 GKT~larala~~~---~~~~i~v~~s~l~------------~~~~g~----~~~~v~~~f~~a~~~~p~il~iDEiD~l~ 247 (399)
|||+||++++.+. +.+.+.|+..+.. .+++++ +++.++.+|..|+...|++||+|++|+|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999865 5666677666643 556677 89999999999999999999999999999
Q ss_pred CCccC---CCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 248 GARFD---DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 248 ~~r~~---~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
+.+.. .+.....-..+.+.++|.++++.....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 88532 22111233445588999998876667788777 77763
No 87
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.46 E-value=2e-13 Score=104.05 Aligned_cols=76 Identities=47% Similarity=0.777 Sum_probs=72.2
Q ss_pred cCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 015875 310 GLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 310 ~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~ 385 (399)
|+|+.++|.+||+.+++++.+..+++++.|+..|+||||+||.++|++|.+.|++++...|+.+||..|++++...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999999888899999999999999999999999999999999999999999999999999764
No 88
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=6.9e-13 Score=127.25 Aligned_cols=142 Identities=12% Similarity=0.169 Sum_probs=108.8
Q ss_pred CcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc------CCceEEEeccchhhhhhch
Q 015875 145 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT------DACFIRVIGSELVQKYVGE 218 (399)
Q Consensus 145 G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~------~~~~i~v~~s~l~~~~~g~ 218 (399)
|++++++.|+..+.. | . ...+|||||||+|||++|+++|+.+ ...++.++++.- ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHC-----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 678888999998875 2 1 4479999999999999999999863 346777765420 12
Q ss_pred hHHHHHHHHHHHHcC----CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCC
Q 015875 219 GARMVRELFQMARSK----KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 294 (399)
Q Consensus 219 ~~~~v~~~f~~a~~~----~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 294 (399)
+-..++++++.+... ...|+||||+|.+ ..+.++.|+..+++ +..++++|++|+.+..+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~l-----------t~~a~naLLk~LEe-----p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERM-----------TQQAANAFLKALEE-----PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB-----------CHHHHHHTHHHHHS-----CCTTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHh-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChHhCh
Confidence 334567777776542 3479999999999 66778888888874 456788888888899999
Q ss_pred ccccCCCCceeEEEecCCCHHHHHHHHHHHH
Q 015875 295 PALLRPGRLDRKVEFGLPDLESRTQIFKIHT 325 (399)
Q Consensus 295 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~ 325 (399)
+++++ | .++|++|+.++....++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 7 88999999999999888776
No 89
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.43 E-value=3.5e-13 Score=104.63 Aligned_cols=77 Identities=47% Similarity=0.777 Sum_probs=72.7
Q ss_pred ecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 015875 309 FGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 309 ~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~ 385 (399)
-.+|+.++|.+||+.+++++.+..+++++.||..|+||||+||.++|++|++.|+++....|+.+||..|++++.++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 45799999999999999999888899999999999999999999999999999999999999999999999998764
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.34 E-value=4.1e-12 Score=111.88 Aligned_cols=131 Identities=14% Similarity=0.095 Sum_probs=85.0
Q ss_pred CCCCccccccC----cHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEE
Q 015875 135 KPDVTYNDVGG----CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRV 206 (399)
Q Consensus 135 ~~~~~~~~i~G----~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----~~~~i~v 206 (399)
..+.+|+++++ +..+++.+++++.. +.+..+.+++|+||||||||+|++++++.+ +..++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 45678888765 34445555555543 233456789999999999999999999876 6677778
Q ss_pred eccchhhhhhchhHHH-HHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 015875 207 IGSELVQKYVGEGARM-VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 285 (399)
Q Consensus 207 ~~s~l~~~~~g~~~~~-v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ 285 (399)
++.++........... ...++... ..|.+|+|||++.... +...+..+.++++... ..+..+|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~~---------~~~~~~~l~~ll~~~~----~~~~~ii~ 138 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSERL---------SDWQRELISYIITYRY----NNLKSTII 138 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSCC---------CHHHHHHHHHHHHHHH----HTTCEEEE
T ss_pred EHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCcC---------CHHHHHHHHHHHHHHH----HcCCCEEE
Confidence 8777765433221110 01122222 2567999999986521 5667778888887653 12456888
Q ss_pred ecCCC
Q 015875 286 ATNRP 290 (399)
Q Consensus 286 atn~~ 290 (399)
+||.+
T Consensus 139 tsn~~ 143 (180)
T 3ec2_A 139 TTNYS 143 (180)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 88875
No 91
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=99.32 E-value=7.2e-12 Score=101.28 Aligned_cols=101 Identities=23% Similarity=0.381 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhCcccccCCCCCcccccchhhHHhhhhcCCceeeeeeeecCCCCcCCceEEeecccceEEE
Q 015875 10 SIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVV 89 (399)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (399)
..++++.+++++.+++++ +++......++|++||++.+.+++ .+++|+..+|.+|++
T Consensus 8 ~~~~l~~~~~~l~~~i~~-------------------lkeel~~L~~~P~~Vg~v~e~~d~----~~~iVk~s~g~~~~V 64 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYH-------------------LENEVARLRSPPLLVGVVSDILED----GRVVVKSSTGPKFVV 64 (109)
T ss_dssp -CHHHHHHHHHHHHHHHH-------------------HHHHHHHHHSCCEEEEEEEEECTT----SCEEEEETTSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHhCCCceEEEEEEEecC----CEEEEEeCCCCEEEE
Confidence 456677777777766652 222333344799999999999986 469999999999999
Q ss_pred ecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCccccccee
Q 015875 90 GLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 133 (399)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~ 133 (399)
.+.+.+++++|+||++|+++..++++...||+++||.++.|.++
T Consensus 65 ~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~M~ve 108 (109)
T 2wg5_A 65 NTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVE 108 (109)
T ss_dssp CBCTTSCTTTCCTTCEEEEETTTCCEEEEEC-------------
T ss_pred EcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchheEec
Confidence 99999999999999999999999999999999999999999775
No 92
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.29 E-value=8e-11 Score=117.61 Aligned_cols=220 Identities=16% Similarity=0.068 Sum_probs=130.3
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHH-HHhcCCceEEEec--c---chhhhhh
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAV-ANRTDACFIRVIG--S---ELVQKYV 216 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~laral-a~~~~~~~i~v~~--s---~l~~~~~ 216 (399)
|.|++.++..|.-.+...... +...-++||.|+||| ||++|+++ ++.+... +.+.+ + .+.....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~-~ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRG-VYVDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSE-EEEEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCe-EEecCCCCCccCceEEEE
Confidence 677777665555444321100 122337999999999 99999999 6654332 22221 1 0110000
Q ss_pred ch-hHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHh----cCCCCCCCeEEEEecCCCC
Q 015875 217 GE-GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL----DGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 217 g~-~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l----~~~~~~~~v~vI~atn~~~ 291 (399)
+. +...-...+..| ..+++|+|||+.+ +...|..|++.+++- .+..-..++.||+|+|+..
T Consensus 285 ~~tG~~~~~G~l~LA---dgGvl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~ 350 (506)
T 3f8t_A 285 EDRGWALRAGAAVLA---DGGILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGE 350 (506)
T ss_dssp ESSSEEEEECHHHHT---TTSEEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC
T ss_pred cCCCcccCCCeeEEc---CCCeeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccc
Confidence 00 000000112222 2349999999999 789999999999872 2222234688999999864
Q ss_pred -----------CCCccccCCCCceeEEE-ecCCCHHHHH---------HHHH---HHHhccCCCCccc---HHHHH----
Q 015875 292 -----------TLDPALLRPGRLDRKVE-FGLPDLESRT---------QIFK---IHTRTMNCERDIR---FELLA---- 340 (399)
Q Consensus 292 -----------~ld~al~r~gRf~~~i~-~~~P~~~er~---------~Il~---~~~~~~~~~~~~~---~~~la---- 340 (399)
.|++++++ |||..+. +..|+.+.-. +.++ .+.+...+...++ .+.+.
T Consensus 351 ~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~ 428 (506)
T 3f8t_A 351 QWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYE 428 (506)
T ss_dssp --CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHH
T ss_pred ccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHH
Confidence 78889999 9987443 4445433211 1222 1222111111111 11111
Q ss_pred -------H------HCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhccc
Q 015875 341 -------R------LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQK 388 (399)
Q Consensus 341 -------~------~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~~~~ 388 (399)
. ..-+.|++.+.++++.|...|..+.+..|+.+|+..|+.-+..+..+
T Consensus 429 ~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~ 489 (506)
T 3f8t_A 429 TRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLET 489 (506)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHH
Confidence 0 24478999999999999999999999999999999999988766543
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.22 E-value=4.6e-11 Score=140.99 Aligned_cols=140 Identities=21% Similarity=0.369 Sum_probs=98.3
Q ss_pred CCCceeEeCCCCCcHHHHHHH-HHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHH---------------cCCCEE
Q 015875 174 PPKGVLCYGPPGTGKTLLARA-VANRTDACFIRVIGSELVQKYVGEGARMVRELFQMAR---------------SKKACI 237 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~lara-la~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~---------------~~~p~i 237 (399)
.++++||+||||||||++|+. +++..+..++.++++.... ...+...++... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 357999999999999999955 4444577888888776532 223333333321 123479
Q ss_pred EEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC-C-------CCCeEEEEecCCCC-----CCCccccCCCCce
Q 015875 238 VFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-A-------RGNIKVLMATNRPD-----TLDPALLRPGRLD 304 (399)
Q Consensus 238 l~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~-------~~~v~vI~atn~~~-----~ld~al~r~gRf~ 304 (399)
|||||++.....+. +.......+.++++. .++- . -.++.+|+|+|++. .++++++| ||
T Consensus 1340 lFiDEinmp~~d~y-----g~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1340 LFCDEINLPKLDKY-----GSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp EEEETTTCSCCCSS-----SCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred EEeccccccccccc-----CchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 99999997644331 234556666666643 2211 1 12588999999984 89999999 99
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcc
Q 015875 305 RKVEFGLPDLESRTQIFKIHTRTM 328 (399)
Q Consensus 305 ~~i~~~~P~~~er~~Il~~~~~~~ 328 (399)
..+.++.|+.+++..|+..+++.+
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999887643
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.22 E-value=9.3e-10 Score=106.17 Aligned_cols=189 Identities=15% Similarity=0.152 Sum_probs=118.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh--
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV-- 212 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~-- 212 (399)
.+....+.++|.+..++.|.+ +.. ..++|+||+|+|||+|++.+++..+..++.+++....
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 69 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEER 69 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTC
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccc
Confidence 344455679999999999888 632 3799999999999999999999887777888776430
Q ss_pred -----hhhhch---------------------------------------hHHHHHHHHHHHHcC--CCEEEEEecCCcc
Q 015875 213 -----QKYVGE---------------------------------------GARMVRELFQMARSK--KACIVFFDEVDAI 246 (399)
Q Consensus 213 -----~~~~g~---------------------------------------~~~~v~~~f~~a~~~--~p~il~iDEiD~l 246 (399)
..+... ....+..++...... .|.+|+|||++.+
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~ 149 (357)
T 2fna_A 70 NYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQEL 149 (357)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGG
T ss_pred cCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHh
Confidence 000000 001233344444332 3889999999998
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---------CCCccccCCCCceeEEEecCCCHHHH
Q 015875 247 GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD---------TLDPALLRPGRLDRKVEFGLPDLESR 317 (399)
Q Consensus 247 ~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~---------~ld~al~r~gRf~~~i~~~~P~~~er 317 (399)
.... +.++...+..+.+. ..++.+|++++... .....+. +|+...+.+++.+.++.
T Consensus 150 ~~~~-------~~~~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~l~~~e~ 214 (357)
T 2fna_A 150 VKLR-------GVNLLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKPFSREEA 214 (357)
T ss_dssp GGCT-------TCCCHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEECCCCHHHH
T ss_pred hccC-------chhHHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeecCCCCHHHH
Confidence 4310 11223333334332 13677777776431 1112232 36667899999999999
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHH
Q 015875 318 TQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTE 357 (399)
Q Consensus 318 ~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~ 357 (399)
.+++...+...+...+. ...+...+.|+. .-+..++..
T Consensus 215 ~~~l~~~~~~~~~~~~~-~~~i~~~t~G~P-~~l~~~~~~ 252 (357)
T 2fna_A 215 IEFLRRGFQEADIDFKD-YEVVYEKIGGIP-GWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHHTCCCCC-HHHHHHHHCSCH-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCc-HHHHHHHhCCCH-HHHHHHHHH
Confidence 99998876544433222 377888887754 455555543
No 95
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.21 E-value=2e-11 Score=94.07 Aligned_cols=75 Identities=36% Similarity=0.504 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhcc
Q 015875 313 DLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQ 387 (399)
Q Consensus 313 ~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~~~ 387 (399)
|.++|.+||+.+++++++..+++++.|+..|+||||+||.++|++|.+.|+++....|+.+||..|++++.++..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 678999999999999998889999999999999999999999999999999999899999999999999977654
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.20 E-value=1.3e-09 Score=104.90 Aligned_cols=192 Identities=20% Similarity=0.204 Sum_probs=117.5
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh--
Q 015875 135 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV-- 212 (399)
Q Consensus 135 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~-- 212 (399)
.|....+.++|.+..++.|.+.+.. | ..++|+||+|+|||+|++.+++..+ ++.+++....
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~ 68 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAE 68 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHT
T ss_pred CCCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccc
Confidence 3444556799999999999998763 1 5799999999999999999999875 6677664431
Q ss_pred ----------hhh---hc-------------------------hhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCC
Q 015875 213 ----------QKY---VG-------------------------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDG 254 (399)
Q Consensus 213 ----------~~~---~g-------------------------~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~ 254 (399)
... .+ .....+..+...+....|.+|+|||++.+....
T Consensus 69 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~---- 144 (350)
T 2qen_A 69 RGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG---- 144 (350)
T ss_dssp TTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----
T ss_pred ccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----
Confidence 000 00 011122222222222238899999999984310
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC---------CCCccccCCCCceeEEEecCCCHHHHHHHHHHHH
Q 015875 255 VGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD---------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 325 (399)
Q Consensus 255 ~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~---------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~ 325 (399)
...+......+..+++. ..++.+|+++.... .....+. ||+...+.+++.+.++..+++...+
T Consensus 145 ~~~~~~~~~~L~~~~~~------~~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 145 SRGGKELLALFAYAYDS------LPNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp TTTTHHHHHHHHHHHHH------CTTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHh------cCCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHH
Confidence 00123444444444443 13677777765421 1122232 3666789999999999999998876
Q ss_pred hccCCC-CcccHHHHHHHCCCCcHHHHHHHHH
Q 015875 326 RTMNCE-RDIRFELLARLCPNSTGADIRSVCT 356 (399)
Q Consensus 326 ~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~ 356 (399)
...+.. .......+...+.|+ |.-+..++.
T Consensus 217 ~~~~~~~~~~~~~~i~~~tgG~-P~~l~~~~~ 247 (350)
T 2qen_A 217 REVNLDVPENEIEEAVELLDGI-PGWLVVFGV 247 (350)
T ss_dssp HTTTCCCCHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 544332 223456677778774 445555543
No 97
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.14 E-value=4.9e-11 Score=102.25 Aligned_cols=103 Identities=19% Similarity=0.263 Sum_probs=70.7
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCc
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 250 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r 250 (399)
+...++|+||+|+|||+|++++++.+ +...+.+++.++... +....+.+|+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~---- 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKL---- 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCcccc----
Confidence 45689999999999999999999976 666888888776543 11234679999999987
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC-CCCCC--ccccCCCCceeEE
Q 015875 251 FDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-PDTLD--PALLRPGRLDRKV 307 (399)
Q Consensus 251 ~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~-~~~ld--~al~r~gRf~~~i 307 (399)
+...+..+.++++.+.. .+..++|+|||. |..+. +.+.+ |+..-.
T Consensus 96 -------~~~~~~~l~~li~~~~~---~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~ 143 (149)
T 2kjq_A 96 -------GNEEQALLFSIFNRFRN---SGKGFLLLGSEYTPQQLVIREDLRT--RMAYCL 143 (149)
T ss_dssp -------CSHHHHHHHHHHHHHHH---HTCCEEEEEESSCTTTSSCCHHHHH--HGGGSE
T ss_pred -------ChHHHHHHHHHHHHHHH---cCCcEEEEECCCCHHHccccHHHHH--HHhcCe
Confidence 22337788888877542 223335566664 44332 67766 665433
No 98
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.14 E-value=7.5e-11 Score=105.54 Aligned_cols=100 Identities=21% Similarity=0.207 Sum_probs=63.3
Q ss_pred CCCccccccCcHH----HHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec
Q 015875 136 PDVTYNDVGGCKE----QIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 208 (399)
Q Consensus 136 ~~~~~~~i~G~~~----~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~ 208 (399)
.+.+|+++.+.+. +++.+++++..... ...+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP---------GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS---------SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 3568888876553 44445555543110 0123789999999999999999999976 678888888
Q ss_pred cchhhhhhchhH-HHHHHHHHHHHcCCCEEEEEecCCcc
Q 015875 209 SELVQKYVGEGA-RMVRELFQMARSKKACIVFFDEVDAI 246 (399)
Q Consensus 209 s~l~~~~~g~~~-~~v~~~f~~a~~~~p~il~iDEiD~l 246 (399)
+++......... ..+..++..... +.+|+|||++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 91 PELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 877654322110 011222333332 349999999775
No 99
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.08 E-value=2.7e-11 Score=93.12 Aligned_cols=71 Identities=24% Similarity=0.306 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 015875 315 ESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 385 (399)
Q Consensus 315 ~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v~~~ 385 (399)
++|.+||+.+++++++..+++++.|+..|+||||+||.++|++|.+.|++++...|+.+||..|++++..+
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~ 71 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKT 71 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC-
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcC
Confidence 47899999999998888889999999999999999999999999999999999999999999999988543
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.99 E-value=1.4e-10 Score=110.91 Aligned_cols=122 Identities=17% Similarity=0.255 Sum_probs=71.7
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcC--CceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccC
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG 248 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~--~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~ 248 (399)
|+.+++.++|+||||||||+||.++|...+ +.|+.+...+.+..+....+..+..+++.+.... +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 455666789999999999999999998654 3466653244333333445556666666665554 999999999965
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccc
Q 015875 249 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPAL 297 (399)
Q Consensus 249 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al 297 (399)
...+.+..+ ...+.+.+++..+.++....++.+|+++| +...++++
T Consensus 197 ~~~~~s~~G--~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSG--GISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccc--hHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 432211111 11233444444443333344677888888 44455543
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.96 E-value=4.1e-10 Score=108.05 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=60.9
Q ss_pred CCccccccCcH----HHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEec
Q 015875 137 DVTYNDVGGCK----EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 208 (399)
Q Consensus 137 ~~~~~~i~G~~----~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~ 208 (399)
+.+|+++.+.. .++..+.+++..+ +-.++.+++||||||||||+||+++|+.+ +.+++.+++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~----------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY----------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC----------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc----------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 46888877533 2344444555431 11135789999999999999999999865 478888888
Q ss_pred cchhhhhhchh-HHHHHHHHHHHHcCCCEEEEEecCCcc
Q 015875 209 SELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAI 246 (399)
Q Consensus 209 s~l~~~~~g~~-~~~v~~~f~~a~~~~p~il~iDEiD~l 246 (399)
++++....... .......+.... .+.+|||||++..
T Consensus 190 ~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 190 PSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 87766543321 111122222222 2349999999765
No 102
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.95 E-value=3e-08 Score=117.32 Aligned_cols=183 Identities=16% Similarity=0.237 Sum_probs=119.7
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCC
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDG 254 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~ 254 (399)
..++++.||+|||||.+++++|+.+|.+++.++|++-.. ...+..+|..+.... +.++||||+.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~-------- 709 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRL-------- 709 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSS--------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhc--------
Confidence 458999999999999999999999999999999987543 233355555554433 59999999998
Q ss_pred CCCChHHHHHHHHHHHHhc-------------C--CCCCCCeEEEEecCC----CCCCCccccCCCCceeEEEecCCCHH
Q 015875 255 VGGDNEVQRTMLEIVNQLD-------------G--FDARGNIKVLMATNR----PDTLDPALLRPGRLDRKVEFGLPDLE 315 (399)
Q Consensus 255 ~~~~~~~~~~l~~ll~~l~-------------~--~~~~~~v~vI~atn~----~~~ld~al~r~gRf~~~i~~~~P~~~ 315 (399)
+.++...+.+.+..+. | +....++.|++|.|+ ...|++++++ || +.+.+..||.+
T Consensus 710 ---~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 710 ---DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 7777777755443321 1 122345678888884 4678999998 99 89999999999
Q ss_pred HHHHHHHHHHhccCCCCcc-----c-HHHHHHHC-----CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 015875 316 SRTQIFKIHTRTMNCERDI-----R-FELLARLC-----PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 316 er~~Il~~~~~~~~~~~~~-----~-~~~la~~~-----~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v 382 (399)
...+|+-... ........ . +..+.... ..|.-+.++.+++.|+...... .-..+-+.+|+..+
T Consensus 784 ~i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~---~~e~~~l~~al~~~ 857 (2695)
T 4akg_A 784 TIAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEF---GEGEKTVVESLKRV 857 (2695)
T ss_dssp HHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHS---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccC---CcHHHHHHHHHHHh
Confidence 8888753221 11111111 0 11122222 1356789999998887654322 12333444555443
No 103
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.76 E-value=7.1e-08 Score=93.41 Aligned_cols=177 Identities=11% Similarity=0.063 Sum_probs=111.3
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CC-ceEEEeccchhhhhhchhHHHHHHHHHHHH----cCCCEEEEEecCCc
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DA-CFIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDA 245 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~-~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~----~~~p~il~iDEiD~ 245 (399)
.+..+|||||+|.||++.++.+++.+ +. ++..+... ++ ..++++++.+. .....|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~--~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------PN--TDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------TT--CCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------CC--CCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 34579999999999999999998865 21 22222111 10 12233333332 34567999999998
Q ss_pred -ccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC------CCCCccccCCCCceeEEEecCCCHHHHH
Q 015875 246 -IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP------DTLDPALLRPGRLDRKVEFGLPDLESRT 318 (399)
Q Consensus 246 -l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~------~~ld~al~r~gRf~~~i~~~~P~~~er~ 318 (399)
+ +.+.++.|+..+++ +..++++|.+++.+ ..+.+++.+ |+ ..++|.+++..+..
T Consensus 88 kl-----------~~~~~~aLl~~le~-----p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 88 GP-----------NAAINEQLLTLTGL-----LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLP 148 (343)
T ss_dssp CC-----------CTTHHHHHHHHHTT-----CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHH
T ss_pred CC-----------ChHHHHHHHHHHhc-----CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHH
Confidence 7 34456667666653 23455566555543 235567777 76 68999999999999
Q ss_pred HHHHHHHhccCCC-CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 015875 319 QIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 382 (399)
Q Consensus 319 ~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ai~~v 382 (399)
..++..++..++. .....+.|+..+.| +.+.+.+.+.....+ .+...||.+++...+...
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~---~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLL---WPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHH---CTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHh---cCCCCCCHHHHHHHHhhh
Confidence 9998888776653 22235566666654 344444444444333 245579999988776654
No 104
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.72 E-value=9.7e-09 Score=101.00 Aligned_cols=120 Identities=21% Similarity=0.212 Sum_probs=76.8
Q ss_pred hCCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccC-
Q 015875 170 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG- 248 (399)
Q Consensus 170 ~g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~- 248 (399)
++++++..++|+||||+||||++++++...+..++.+..+.-. ....+..+ .+..++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg~~------~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELGVA------IDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHGGG------TTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHHHh------cchhHHHHHHHHHHHHH
Confidence 4788888999999999999999999999887765543332210 00111112 2334789999999865
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecC
Q 015875 249 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 311 (399)
Q Consensus 249 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~ 311 (399)
.+.... +. ... .+..+.+.+++ .+.|+++||+++.+ +++++|+|++..+....
T Consensus 232 ~r~l~~--~~-~~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPS--GQ-GIN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCC--CS-HHH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhccc--cC-cch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 221111 11 111 22233344443 35688899999999 89999999987665543
No 105
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=98.71 E-value=2.7e-08 Score=76.32 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=58.8
Q ss_pred hhcCCceeeeeeeecCCCCcCCceEEeecccceEEEecCCCCCCCCCCCCceeeecCccceeeccCC
Q 015875 54 QEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLP 120 (399)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 120 (399)
-.++|++||++.+.+++ .+++++...+.+|++.+.+.++.++|+||++|+++..++++...||
T Consensus 14 L~~~P~~vG~v~e~~dd----~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp 76 (85)
T 3h43_A 14 MRVPPLIVGTVVDKVGE----RKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLP 76 (85)
T ss_dssp HHSCCEEEEEEEEEEET----TEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC
T ss_pred hcCCCceEEEEEEEcCC----CEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhh
Confidence 34899999999999986 5799999999999999999999999999999999999999999887
No 106
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.69 E-value=1.2e-08 Score=91.53 Aligned_cols=128 Identities=21% Similarity=0.202 Sum_probs=79.6
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh--------cC-CceEEEeccchhhhhh-------------ch--hHHHHHHHHHHH
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR--------TD-ACFIRVIGSELVQKYV-------------GE--GARMVRELFQMA 230 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~--------~~-~~~i~v~~s~l~~~~~-------------g~--~~~~v~~~f~~a 230 (399)
+...|++|+||||||++|...+.. .| .+++..++.++..... ++ ....+...+..+
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 346899999999999999886433 34 6666666665542221 00 112222222112
Q ss_pred HcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEec
Q 015875 231 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 310 (399)
Q Consensus 231 ~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~ 310 (399)
....++|+|||++.+.+.+.+.. . . .+++..+.. .....+-+|.+|+.+..|+.+++. |+...++++
T Consensus 85 -~~~~~vliIDEAq~l~~~~~~~~-e-~-------~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~ 151 (199)
T 2r2a_A 85 -ENIGSIVIVDEAQDVWPARSAGS-K-I-------PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIA 151 (199)
T ss_dssp -GGTTCEEEETTGGGTSBCCCTTC-C-C-------CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEE
T ss_pred -ccCceEEEEEChhhhccCccccc-h-h-------HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEc
Confidence 23466999999999976542211 1 1 123334332 223456788888889999999988 999999998
Q ss_pred CCCHH
Q 015875 311 LPDLE 315 (399)
Q Consensus 311 ~P~~~ 315 (399)
.|...
T Consensus 152 ~~~~~ 156 (199)
T 2r2a_A 152 SNKMG 156 (199)
T ss_dssp ECSSC
T ss_pred CcccC
Confidence 86544
No 107
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.65 E-value=3.2e-08 Score=88.60 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=27.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcCCce
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACF 203 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~~~~ 203 (399)
+++..+++|||||||||||++|.++|+.+....
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 344456899999999999999999999886543
No 108
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.60 E-value=1e-07 Score=109.71 Aligned_cols=124 Identities=20% Similarity=0.217 Sum_probs=80.8
Q ss_pred ChhHHHhhC---CCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchh----hhhhc------------hhH
Q 015875 163 HPEKFVKLG---IDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV----QKYVG------------EGA 220 (399)
Q Consensus 163 ~~~~~~~~g---~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~----~~~~g------------~~~ 220 (399)
.+++-.-+| ++++++++|+||||||||+||.+++.+. +.....++..+.+ ....| ..+
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E 1491 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 1491 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHH
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHH
Confidence 333344444 7889999999999999999999998764 5566666665432 22222 345
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCCcccCCc---cCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 015875 221 RMVRELFQMARSKKACIVFFDEVDAIGGAR---FDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 286 (399)
Q Consensus 221 ~~v~~~f~~a~~~~p~il~iDEiD~l~~~r---~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~a 286 (399)
..++.++..++..+|++||||+++.+.+.+ .+.+.+......+.+.++|.++.+.....++.||++
T Consensus 1492 ~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~t 1560 (2050)
T 3cmu_A 1492 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 1560 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 667777778888999999999999887643 111111111124555666666665555566655544
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.56 E-value=2.2e-07 Score=110.88 Aligned_cols=162 Identities=17% Similarity=0.221 Sum_probs=110.4
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCC
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGV 255 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~ 255 (399)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-+.. ..+..+|.-+... .+..+||||+++
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl--------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRL--------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcC---------
Confidence 467899999999999999999999999999999875432 2334455444433 348899999999
Q ss_pred CCChHHHHHHHHHHHHh-------------c-C--CCCCCCeEEEEecCC----CCCCCccccCCCCceeEEEecCCCHH
Q 015875 256 GGDNEVQRTMLEIVNQL-------------D-G--FDARGNIKVLMATNR----PDTLDPALLRPGRLDRKVEFGLPDLE 315 (399)
Q Consensus 256 ~~~~~~~~~l~~ll~~l-------------~-~--~~~~~~v~vI~atn~----~~~ld~al~r~gRf~~~i~~~~P~~~ 315 (399)
+.++...+.+.+..+ . | +.-+.++.|++|.|+ ...|+++++. || +.+.+..||.+
T Consensus 669 --~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~ 743 (3245)
T 3vkg_A 669 --EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDRE 743 (3245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHH
Confidence 777777776655421 1 1 122346778888884 4689999998 99 88999999998
Q ss_pred HHHHHHHHHHhccCCCCccc-------HHHHH-----HHCC-CCcHHHHHHHHHHHHHH
Q 015875 316 SRTQIFKIHTRTMNCERDIR-------FELLA-----RLCP-NSTGADIRSVCTEAGMF 361 (399)
Q Consensus 316 er~~Il~~~~~~~~~~~~~~-------~~~la-----~~~~-g~sg~di~~l~~~A~~~ 361 (399)
...+|+-. ..++...-. +-.++ ...+ .|.-|.+++++..|+..
T Consensus 744 ~i~ei~L~---s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~l 799 (3245)
T 3vkg_A 744 MIAQVMLY---SQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGI 799 (3245)
T ss_dssp HHHHHHHH---TTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Confidence 88876422 223221111 11111 1122 34558888888888764
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.53 E-value=4.9e-07 Score=107.92 Aligned_cols=139 Identities=23% Similarity=0.306 Sum_probs=93.6
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc-CCceEEEeccchhhhhhchhHHHHHHHHHHH----H------------cCCCEE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT-DACFIRVIGSELVQKYVGEGARMVRELFQMA----R------------SKKACI 237 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~-~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a----~------------~~~p~i 237 (399)
.++|||+||||||||+++......+ +.+++.++++.-.. ...+...++.. + .+...|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 5689999999999998876655444 56678888765432 23333333321 0 122369
Q ss_pred EEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC-------CCCCeEEEEecCCC-----CCCCccccCCCCcee
Q 015875 238 VFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-------ARGNIKVLMATNRP-----DTLDPALLRPGRLDR 305 (399)
Q Consensus 238 l~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-------~~~~v~vI~atn~~-----~~ld~al~r~gRf~~ 305 (399)
+||||++.-..+. .+.......|.++++.-.-+. ...++.+|+|+|+| ..++++++| || .
T Consensus 1378 lFiDDiNmp~~D~-----yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~ 1449 (3245)
T 3vkg_A 1378 VFCDEINLPSTDK-----YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA-P 1449 (3245)
T ss_dssp EEETTTTCCCCCT-----TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-C
T ss_pred EEecccCCCCccc-----cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-e
Confidence 9999998653321 224456666777776521111 12468899999987 468999999 99 6
Q ss_pred EEEecCCCHHHHHHHHHHHHhc
Q 015875 306 KVEFGLPDLESRTQIFKIHTRT 327 (399)
Q Consensus 306 ~i~~~~P~~~er~~Il~~~~~~ 327 (399)
.+.++.|+.++...|+..++..
T Consensus 1450 vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 7999999999999998766543
No 111
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.47 E-value=1.7e-07 Score=87.47 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=67.3
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhhhchhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCC
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDD 253 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~~g~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~ 253 (399)
+.++++||||||||||++|+++|+.+.. +-.++.+. ..+ .+.. .....++++||....
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~--~~f----------~l~~--~~~k~i~l~Ee~~~~------- 160 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN--ENF----------PFND--CVDKMVIWWEEGKMT------- 160 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC--SSC----------TTGG--GSSCSEEEECSCCEE-------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc--ccc----------cccc--ccccEEEEeccccch-------
Confidence 3568999999999999999999997543 22222211 000 1111 122347777776654
Q ss_pred CCCCChHHHHHHHHHHH----HhcCC-C---CCCCeEEEEecCC-C----------CCCCccccCCCCceeEEEec----
Q 015875 254 GVGGDNEVQRTMLEIVN----QLDGF-D---ARGNIKVLMATNR-P----------DTLDPALLRPGRLDRKVEFG---- 310 (399)
Q Consensus 254 ~~~~~~~~~~~l~~ll~----~l~~~-~---~~~~v~vI~atn~-~----------~~ld~al~r~gRf~~~i~~~---- 310 (399)
.+.+..+-.++. .++.. . .-....+|++||. + +...++|.+ |+ ..+.|+
T Consensus 161 -----~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~~~~p 232 (267)
T 1u0j_A 161 -----AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELTRRLD 232 (267)
T ss_dssp -----TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECCSCCC
T ss_pred -----hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECCCcCC
Confidence 122333444443 11110 0 1134568888886 2 234567877 87 678887
Q ss_pred ----CCCHHHHHHHHH
Q 015875 311 ----LPDLESRTQIFK 322 (399)
Q Consensus 311 ----~P~~~er~~Il~ 322 (399)
+.+.++-...|+
T Consensus 233 ~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 233 HDFGKVTKQEVKDFFR 248 (267)
T ss_dssp TTSCCCCHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHH
Confidence 456666666666
No 112
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.44 E-value=8e-07 Score=78.11 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=23.1
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCce
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACF 203 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~ 203 (399)
.+.|.||+|+|||||++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999775443
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.24 E-value=3.8e-06 Score=76.45 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=52.0
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh--c-------CCceEEEeccch------hhh--hhch---------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR--T-------DACFIRVIGSEL------VQK--YVGE--------------- 218 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~--~-------~~~~i~v~~s~l------~~~--~~g~--------------- 218 (399)
|+++...++|+||||+|||++++.++.. . +...+.++.... ... ..|-
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 5677788999999999999999999984 2 456777766541 000 0110
Q ss_pred -hH---HHHHHHHHHHHcCCCEEEEEecCCcccCC
Q 015875 219 -GA---RMVRELFQMARSKKACIVFFDEVDAIGGA 249 (399)
Q Consensus 219 -~~---~~v~~~f~~a~~~~p~il~iDEiD~l~~~ 249 (399)
.. ..+..+...+....|.+|+|||+..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 01 12223444445578999999999988643
No 114
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.23 E-value=1.6e-05 Score=82.22 Aligned_cols=167 Identities=15% Similarity=0.171 Sum_probs=94.5
Q ss_pred cccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHh-------c--CCceEEEeccc
Q 015875 140 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR-------T--DACFIRVIGSE 210 (399)
Q Consensus 140 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~-------~--~~~~i~v~~s~ 210 (399)
...++|.+..+++|.+.+... -...+.++|+||+|+|||+||+.+++. . +.-++.+....
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 345999999999999988641 123457999999999999999999753 2 22333443221
Q ss_pred ---hhhhh------hc----------hh-HHHHHHHHHHHHc-CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHH
Q 015875 211 ---LVQKY------VG----------EG-ARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 269 (399)
Q Consensus 211 ---l~~~~------~g----------~~-~~~v~~~f~~a~~-~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 269 (399)
+.... .+ .. ......+...... ..+.+|+||+++.. . .+
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-------------~-------~l 251 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-------------W-------VL 251 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-------------H-------HH
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-------------H-------HH
Confidence 11111 01 01 1112222222222 25789999999753 1 12
Q ss_pred HHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEe---cCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCC
Q 015875 270 NQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEF---GLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS 346 (399)
Q Consensus 270 ~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~---~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~ 346 (399)
.. + ..+..||+||....... .. . + ...++ ...+.++-.++|..+..............|+..+.|+
T Consensus 252 ~~---l--~~~~~ilvTsR~~~~~~-~~-~-~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~ 320 (591)
T 1z6t_A 252 KA---F--DSQCQILLTTRDKSVTD-SV-M-G---PKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS 320 (591)
T ss_dssp HT---T--CSSCEEEEEESCGGGGT-TC-C-S---CEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC
T ss_pred HH---h--cCCCeEEEECCCcHHHH-hc-C-C---CceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC
Confidence 22 2 23567888887543111 11 1 1 22333 3578888889998876532111123457888888875
Q ss_pred cH
Q 015875 347 TG 348 (399)
Q Consensus 347 sg 348 (399)
.-
T Consensus 321 PL 322 (591)
T 1z6t_A 321 PL 322 (591)
T ss_dssp HH
T ss_pred cH
Confidence 44
No 115
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.22 E-value=4.3e-06 Score=75.32 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=62.7
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh----hh--hc------------------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ----KY--VG------------------------ 217 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~----~~--~g------------------------ 217 (399)
|+.++..++|+||+|+|||+|++.++... +..++.++...... .. .+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 46677789999999999999999999643 44555554322110 00 00
Q ss_pred ------hhHHHHHHHHHHHHcCCCE--EEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 218 ------EGARMVRELFQMARSKKAC--IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 218 ------~~~~~v~~~f~~a~~~~p~--il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
........+...+....|. +|+|||+..+... +......+.+.+..+. ...++.||++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~--------d~~~~~~~~~~l~~~~---~~~~~~vi~~~h~ 167 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD--------KPAMARKISYYLKRVL---NKWNFTIYATSQY 167 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS--------CGGGHHHHHHHHHHHH---HHTTEEEEEEEC-
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC--------CHHHHHHHHHHHHHHH---HhCCCeEEEEecc
Confidence 1122233344444455788 9999999987532 2223344444444431 1235677877765
Q ss_pred C
Q 015875 290 P 290 (399)
Q Consensus 290 ~ 290 (399)
.
T Consensus 168 ~ 168 (235)
T 2w0m_A 168 A 168 (235)
T ss_dssp -
T ss_pred C
Confidence 4
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.19 E-value=3.5e-06 Score=75.44 Aligned_cols=40 Identities=28% Similarity=0.257 Sum_probs=33.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 210 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~ 210 (399)
|+++...++|+||||+|||++++.++...+...+.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5677788999999999999999999985566777777644
No 117
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.19 E-value=3e-06 Score=82.51 Aligned_cols=117 Identities=17% Similarity=0.230 Sum_probs=69.1
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhh----hh------------chhHHHHHHHHHHHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK----YV------------GEGARMVRELFQMAR 231 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~----~~------------g~~~~~v~~~f~~a~ 231 (399)
|+++...++|+||||+|||+|+..++..+ +..++.++..+.... .. ...+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56777789999999999999999999764 566777776543211 00 112223332333334
Q ss_pred cCCCEEEEEecCCcccC-CccCCCCCCC--hHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 015875 232 SKKACIVFFDEVDAIGG-ARFDDGVGGD--NEVQRTMLEIVNQLDGFDARGNIKVLMAT 287 (399)
Q Consensus 232 ~~~p~il~iDEiD~l~~-~r~~~~~~~~--~~~~~~l~~ll~~l~~~~~~~~v~vI~at 287 (399)
...+.+++||.+..+.+ ...++..+.. ....+.+.+++..+..+....++.||++.
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 56788999999999876 2222221111 12334455555544443334556666654
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.18 E-value=6e-06 Score=80.76 Aligned_cols=118 Identities=21% Similarity=0.273 Sum_probs=67.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhh----hc------------hhHHHHHHHHHHHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY----VG------------EGARMVRELFQMAR 231 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~----~g------------~~~~~v~~~f~~a~ 231 (399)
|+++...++|+||||+|||+||..++... +.+++.++...-.... .| ..+..+..+....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56777789999999999999999998753 5677777664422111 11 12222222323334
Q ss_pred cCCCEEEEEecCCcccCCccCCCCCCCh---HHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 232 SKKACIVFFDEVDAIGGARFDDGVGGDN---EVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 232 ~~~p~il~iDEiD~l~~~r~~~~~~~~~---~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
...+++|+||.+..+.......+..++. ...+.+.+++..+..+....++.||++..
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 5678899999999997522111100110 12234455555554333445666666643
No 119
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.18 E-value=6.2e-05 Score=84.05 Aligned_cols=172 Identities=14% Similarity=0.124 Sum_probs=101.9
Q ss_pred CCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc-------CCceEEEecc
Q 015875 137 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGS 209 (399)
Q Consensus 137 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~-------~~~~i~v~~s 209 (399)
+.....++|.++.+++|.+.+... -..++-+.|+|+.|+|||+||+.+++.. ...++.++.+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 344456999999999999988531 1234568999999999999999998752 2223344433
Q ss_pred ch-----hhhh------h----------chhHHHHHHHHHHHHcC--CCEEEEEecCCcccCCccCCCCCCChHHHHHHH
Q 015875 210 EL-----VQKY------V----------GEGARMVRELFQMARSK--KACIVFFDEVDAIGGARFDDGVGGDNEVQRTML 266 (399)
Q Consensus 210 ~l-----~~~~------~----------g~~~~~v~~~f~~a~~~--~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~ 266 (399)
.. .... . ......+...+...... .+.+|+||+++.. +
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-------------~------ 249 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-------------W------ 249 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-------------H------
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-------------H------
Confidence 31 0000 0 01112222333322222 3679999999753 0
Q ss_pred HHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecC-CCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCC
Q 015875 267 EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL-PDLESRTQIFKIHTRTMNCERDIRFELLARLCPN 345 (399)
Q Consensus 267 ~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~-P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g 345 (399)
.+..+ ..+..||+||......... . .....+.++. .+.++-.++|..+..............|++.+.|
T Consensus 250 ----~~~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g 319 (1249)
T 3sfz_A 250 ----VLKAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKG 319 (1249)
T ss_dssp ----HHTTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTT
T ss_pred ----HHHhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCC
Confidence 12222 2345788888765432211 1 2234667775 7888888999877743322222336788999988
Q ss_pred CcH
Q 015875 346 STG 348 (399)
Q Consensus 346 ~sg 348 (399)
..-
T Consensus 320 lPL 322 (1249)
T 3sfz_A 320 SPL 322 (1249)
T ss_dssp CHH
T ss_pred CHH
Confidence 654
No 120
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.15 E-value=5.8e-06 Score=75.48 Aligned_cols=129 Identities=17% Similarity=0.221 Sum_probs=72.4
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHH--Hh--cCCceEEEeccchhhh------hhc-----------------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVA--NR--TDACFIRVIGSELVQK------YVG----------------------- 217 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala--~~--~~~~~i~v~~s~l~~~------~~g----------------------- 217 (399)
|+++...+.|.||+|+|||||++.++ .. .+...+.+........ ..|
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 56777889999999999999999998 32 2444444443221100 000
Q ss_pred -------------hhHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 015875 218 -------------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 284 (399)
Q Consensus 218 -------------~~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI 284 (399)
........+...+....|.+|++||+..+..... ........+..++..+. ..++.||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~----~~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHH----HCCCeEE
Confidence 0112223334444557889999999877653110 12344555667776653 2245678
Q ss_pred EecCCCCCCC-----ccccCCCCc-eeEEEec
Q 015875 285 MATNRPDTLD-----PALLRPGRL-DRKVEFG 310 (399)
Q Consensus 285 ~atn~~~~ld-----~al~r~gRf-~~~i~~~ 310 (399)
++|+..+... +.+.. .+ |+++.+.
T Consensus 177 ~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 177 LTTEAPDPQHGKLSRYGIEE--FIARGVIVLD 206 (251)
T ss_dssp EEECCC----CCSSSSSCGG--GGCSEEEEEE
T ss_pred EEECCCCCCcccccccChhh--EeeeEEEEEe
Confidence 8887755441 22222 45 6666664
No 121
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.15 E-value=2.2e-06 Score=83.36 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=51.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhh----hhc------------hhHHHHHHHHHHHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK----YVG------------EGARMVRELFQMAR 231 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~----~~g------------~~~~~v~~~f~~a~ 231 (399)
|+++...++|+||||+|||+||..++... +...+.++...-... ..| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56777789999999999999999998643 556666665432211 111 11222222333344
Q ss_pred cCCCEEEEEecCCcccC
Q 015875 232 SKKACIVFFDEVDAIGG 248 (399)
Q Consensus 232 ~~~p~il~iDEiD~l~~ 248 (399)
...|.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999999974
No 122
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.13 E-value=3.3e-06 Score=85.10 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=37.6
Q ss_pred cccccceecCCCCcccccc-CcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 126 SVTMMTVEEKPDVTYNDVG-GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 126 ~~~~~~~~~~~~~~~~~i~-G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
..+..++..+.+.+|+++- ++..++..+...+.. ....++|.|+||||||+++.+++..+
T Consensus 9 ~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 9 HHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ------------CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccCCCccccCCCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3445567778889998875 666666666666543 12379999999999999999999865
No 123
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.05 E-value=2.6e-06 Score=98.26 Aligned_cols=129 Identities=18% Similarity=0.220 Sum_probs=80.6
Q ss_pred CCChhHHHhh---CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhh----hch--------hHHH
Q 015875 161 MLHPEKFVKL---GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY----VGE--------GARM 222 (399)
Q Consensus 161 ~~~~~~~~~~---g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~----~g~--------~~~~ 222 (399)
...+++..-+ |+.++..++|+|+||+|||+||..+|..+ +.+++.++..+..... .|- .+..
T Consensus 715 TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~ 794 (2050)
T 3cmu_A 715 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 794 (2050)
T ss_dssp CSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSS
T ss_pred cCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCC
Confidence 3445556666 47888999999999999999999999865 4568888876654433 120 0111
Q ss_pred HHHHHHHHH----cCCCEEEEEecCCcccC-CccCCCCC-CCh-HHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 223 VRELFQMAR----SKKACIVFFDEVDAIGG-ARFDDGVG-GDN-EVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 223 v~~~f~~a~----~~~p~il~iDEiD~l~~-~r~~~~~~-~~~-~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
+..++..++ ...|++||||.++.+.. ...++..+ ... -..+.+.+++..|..+....++.||+++..
T Consensus 795 i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 795 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred HHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 333333333 36789999999999976 32111111 111 113345566666655555667878877654
No 124
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.02 E-value=6.7e-06 Score=80.16 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=51.8
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhh----hhc-----------hhHHHHHHHHH-HHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK----YVG-----------EGARMVRELFQ-MAR 231 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~----~~g-----------~~~~~v~~~f~-~a~ 231 (399)
|+++...++|+|+||+|||+||..++... +.+++.++...-... ..| .....+..++. .++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56777889999999999999999998753 567777776432211 011 01122223332 234
Q ss_pred cCCCEEEEEecCCcccC
Q 015875 232 SKKACIVFFDEVDAIGG 248 (399)
Q Consensus 232 ~~~p~il~iDEiD~l~~ 248 (399)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56788999999999975
No 125
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.96 E-value=7.6e-06 Score=78.64 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=67.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---------CCceEEEeccchh--h------hhhch---------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELV--Q------KYVGE--------------- 218 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---------~~~~i~v~~s~l~--~------~~~g~--------------- 218 (399)
|+++...++|+||||+|||++|..++... +...+.++...-+ . ...|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 66777889999999999999999999764 4567777765421 0 00010
Q ss_pred -hH---HHHHHHHHHHHc-CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecC
Q 015875 219 -GA---RMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 288 (399)
Q Consensus 219 -~~---~~v~~~f~~a~~-~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 288 (399)
.+ ..+..+...++. ..+.+|+||.+..+.....++ .+...+.+..+.+++..+..+....++.||++..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~-~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG-RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT-TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC-cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 11 123334444555 778999999999986432111 0111122334455555444333334566666543
No 126
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.93 E-value=1.1e-05 Score=78.13 Aligned_cols=118 Identities=15% Similarity=0.189 Sum_probs=66.8
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---------CCceEEEeccchhh--------hhhc----------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQ--------KYVG---------------- 217 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---------~~~~i~v~~s~l~~--------~~~g---------------- 217 (399)
|+++..-++|+||||+|||++|..+|... +...++++....+. ...|
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 56777789999999999999999999862 45677776654210 0000
Q ss_pred ---hhHHHHHHHHHHHHc--CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 218 ---EGARMVRELFQMARS--KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 218 ---~~~~~v~~~f~~a~~--~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
+....+..+...++. ..+.+|+||.+..+.....++ .+...+.+..+.+++..+..+....++.||++...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~-~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG-RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG-GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 011122233344455 678999999999986432110 01111222234444444433333345666666543
No 127
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.93 E-value=1.4e-05 Score=79.18 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=65.6
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---------CCceEEEeccchhh--------hhhch---------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQ--------KYVGE--------------- 218 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---------~~~~i~v~~s~l~~--------~~~g~--------------- 218 (399)
|+.+...++|+||||+|||+|++.++-.. +...++++..+.+. ..+|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 66777889999999999999999776322 23467776654211 00110
Q ss_pred ----hHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC
Q 015875 219 ----GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 289 (399)
Q Consensus 219 ----~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 289 (399)
....+..+...+....|.+|+||++..+.....++ .+...+.++.+.+++..+..+....++.||+++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 01122233344445689999999998886543221 11112334444444444433333345667777654
No 128
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.87 E-value=1e-05 Score=72.81 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=25.0
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
|+++...+.|.||+|+|||+|++.++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5667778999999999999999999974
No 129
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.87 E-value=3.7e-05 Score=66.51 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=31.7
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
+..++|.|+||+||||+++.+++.++.+++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 4569999999999999999999999988887765433
No 130
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.84 E-value=3.2e-05 Score=73.72 Aligned_cols=116 Identities=14% Similarity=0.212 Sum_probs=63.8
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc-----CCceEEEeccchhhh----hhc------------hhHHHHHHHHHH
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGSELVQK----YVG------------EGARMVRELFQM 229 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~-----~~~~i~v~~s~l~~~----~~g------------~~~~~v~~~f~~ 229 (399)
|+++. .++|+||||+|||+|+-.++... +..++.++..+-+.. ..| ..+...-.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 56666 69999999999999988877543 567788877543211 111 112220222222
Q ss_pred ---HHcCCCEEEEEecCCcccCCc-cCCCCCC----ChHHHHHHHHHHHHhcCCCCCCCeEEEEec
Q 015875 230 ---ARSKKACIVFFDEVDAIGGAR-FDDGVGG----DNEVQRTMLEIVNQLDGFDARGNIKVLMAT 287 (399)
Q Consensus 230 ---a~~~~p~il~iDEiD~l~~~r-~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 287 (399)
++...|.+|+||-|..+.+.. .++..+. +...++.+.+.|..+..+....++.+|++-
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 356789999999999997532 2211111 012334454555443333334566565543
No 131
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.84 E-value=2.5e-05 Score=75.91 Aligned_cols=41 Identities=27% Similarity=0.325 Sum_probs=32.6
Q ss_pred hCCCCCCceeEeCCCCCcHHHHHHHHHHhc---------CCceEEEeccc
Q 015875 170 LGIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSE 210 (399)
Q Consensus 170 ~g~~~~~~vLL~GppGtGKT~larala~~~---------~~~~i~v~~s~ 210 (399)
.|+++...+.|+||||+|||+|++.++... +...++++..+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 366777789999999999999999999875 23557777644
No 132
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=97.83 E-value=3.8e-05 Score=69.71 Aligned_cols=67 Identities=6% Similarity=-0.007 Sum_probs=56.8
Q ss_pred hhcCCceeeeeeeecCCCCcCCceEEeecccceEEEecCCCCCCCCCCCCceeeecCccceeeccCCCCCCCc
Q 015875 54 QEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPS 126 (399)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 126 (399)
-.++|+++|++.+.++. ..++|. ..|.+|+|.+...++.++|++|++|+++ .++++...||++..-.
T Consensus 94 L~sPPL~iGtvlev~dd----~~aiV~-s~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~E~~Ge 160 (251)
T 3m9b_A 94 LGQPPSGYGVLLATHDD----DTVDVF-TSGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTFEAVGE 160 (251)
T ss_dssp HHSCCEEEEEEEEECSS----SCEEEE-CSSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCCCCCSE
T ss_pred hcCCCceEEEEEEEcCC----CEEEEE-eCCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCCCCccc
Confidence 34899999999999875 346777 5789999999999999999999999995 6899999998765443
No 133
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.81 E-value=7.2e-05 Score=67.90 Aligned_cols=38 Identities=34% Similarity=0.338 Sum_probs=29.7
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh---cCCceEEEec
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIG 208 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~---~~~~~i~v~~ 208 (399)
|+++...++|+||||+|||+++..++.. .+...+.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 6677788999999999999999888763 2555666554
No 134
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.75 E-value=2.6e-05 Score=89.07 Aligned_cols=78 Identities=21% Similarity=0.286 Sum_probs=53.4
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh----hhhch--------hHHHHHHHHHHH----H
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ----KYVGE--------GARMVRELFQMA----R 231 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~----~~~g~--------~~~~v~~~f~~a----~ 231 (399)
|+.++..++|+||||+|||+||..+|... +.+++.++..+... ...|. .+..+.+++..+ +
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 57888899999999999999999998754 45677777655332 21220 000122333333 3
Q ss_pred cCCCEEEEEecCCcccC
Q 015875 232 SKKACIVFFDEVDAIGG 248 (399)
Q Consensus 232 ~~~p~il~iDEiD~l~~ 248 (399)
...|++|+||.++.+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57889999999999974
No 135
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.72 E-value=8e-06 Score=72.03 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=19.1
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
.-++++||+|+|||+++..++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999666654
No 136
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.71 E-value=2.9e-05 Score=74.37 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=65.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---------------C----CceEEEeccchh--h----h--hhch-----
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------------D----ACFIRVIGSELV--Q----K--YVGE----- 218 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---------------~----~~~i~v~~s~l~--~----~--~~g~----- 218 (399)
|+++...++|+||||+|||++|..+|... + ...++++...-+ . . ..|.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 56777789999999999999999998642 2 466677655421 1 0 0010
Q ss_pred -----------hH---HHHHHHHHHHHc-CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 015875 219 -----------GA---RMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 283 (399)
Q Consensus 219 -----------~~---~~v~~~f~~a~~-~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v 283 (399)
.+ ..+..+...++. ..+.+|+||.+..+.....++ .+...+.+..+.+++..+..+....++.|
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~-~~~~~~r~~~~~~~~~~L~~la~~~~~~v 252 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTG-RGKLAERQQKLGRHMATLNKLADLFNCVV 252 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCC-TTSHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 01 122234444455 678899999999986422111 01111223344555555444333456666
Q ss_pred EEec
Q 015875 284 LMAT 287 (399)
Q Consensus 284 I~at 287 (399)
|++.
T Consensus 253 i~~n 256 (322)
T 2i1q_A 253 LVTN 256 (322)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 6654
No 137
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.68 E-value=0.00037 Score=71.50 Aligned_cols=74 Identities=16% Similarity=0.307 Sum_probs=56.6
Q ss_pred EEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCccccCCCCceeEEEecCCC
Q 015875 236 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD--TLDPALLRPGRLDRKVEFGLPD 313 (399)
Q Consensus 236 ~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~--~ld~al~r~gRf~~~i~~~~P~ 313 (399)
-+|+|||++.+.... ..++...+.++.... ...++.+|++|.+|. .++..++. -|...|.|...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~G----Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQKA----RAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHHC----TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHH----hhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 589999999885421 245566666666653 356899999999987 78888877 788899999999
Q ss_pred HHHHHHHHH
Q 015875 314 LESRTQIFK 322 (399)
Q Consensus 314 ~~er~~Il~ 322 (399)
..+...|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888877764
No 138
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.67 E-value=0.00041 Score=71.31 Aligned_cols=167 Identities=10% Similarity=0.077 Sum_probs=93.5
Q ss_pred cCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHH----hcCCc---eEEEeccch-----
Q 015875 144 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN----RTDAC---FIRVIGSEL----- 211 (399)
Q Consensus 144 ~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~----~~~~~---~i~v~~s~l----- 211 (399)
.|.+..+++|.+.+... +-...+.|.|+|+.|+|||+||+.+++ ..... .+.++.+.-
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999999988531 112346799999999999999999996 33222 123333321
Q ss_pred hh---h---hhch-------------hHHHHHHHHHHHHcC-CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHH
Q 015875 212 VQ---K---YVGE-------------GARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 271 (399)
Q Consensus 212 ~~---~---~~g~-------------~~~~v~~~f~~a~~~-~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 271 (399)
.. . ..+. ....+...+...-.. ...+|+||+++.. ... .+..
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~------------~~~-----~~~~- 262 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE------------ETI-----RWAQ- 262 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH------------HHH-----HHHH-
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc------------hhh-----cccc-
Confidence 00 0 0110 011122223222234 3789999999764 111 1111
Q ss_pred hcCCCCCCCeEEEEecCCCCCCCccccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcc--cHHHHHHHCCCCcH
Q 015875 272 LDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDI--RFELLARLCPNSTG 348 (399)
Q Consensus 272 l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~--~~~~la~~~~g~sg 348 (399)
. .+..||.||+..... ... +.....+.++..+.++-.++|..+.......... ....|+..+.|..-
T Consensus 263 ~------~gs~ilvTTR~~~v~-~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPL 331 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVEIS-NAA---SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPA 331 (549)
T ss_dssp H------TTCEEEEEESBGGGG-GGC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHH
T ss_pred c------CCCEEEEEcCCHHHH-HHc---CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChH
Confidence 1 345688888753211 111 1133568899999999999998874322210111 13556777766543
No 139
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.65 E-value=0.0001 Score=66.97 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=43.1
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccc-------hhhhhhchh-----HHHHHHHHHHHHc----CCC
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE-------LVQKYVGEG-----ARMVRELFQMARS----KKA 235 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~-------l~~~~~g~~-----~~~v~~~f~~a~~----~~p 235 (399)
..-++++||+|+|||+++..++.++ +...+.+.... +... .|-. .....++++.+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3458889999999999999888765 44555553211 1111 1110 0011244555544 357
Q ss_pred EEEEEecCCcc
Q 015875 236 CIVFFDEVDAI 246 (399)
Q Consensus 236 ~il~iDEiD~l 246 (399)
.+|+|||++.+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999987
No 140
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.64 E-value=3.6e-05 Score=68.23 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=29.4
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
+.+...++|.||||+||||+++.++..++.+++..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 34566899999999999999999999999887643
No 141
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.61 E-value=6.6e-05 Score=70.24 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.5
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
|+.+...++|+||+|+|||+|++.++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5566778999999999999999999864
No 142
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.59 E-value=0.00012 Score=71.23 Aligned_cols=97 Identities=23% Similarity=0.245 Sum_probs=56.8
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEec-cchh---------hhhhchhHHHHHHHHHHHHcCCCEEEE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG-SELV---------QKYVGEGARMVRELFQMARSKKACIVF 239 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~-s~l~---------~~~~g~~~~~v~~~f~~a~~~~p~il~ 239 (399)
+...++|.||+|+||||++++++... +..++.+.- .++. +...+.....+...+..+-...|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 34469999999999999999998854 233333321 1111 111111112233466666678999999
Q ss_pred EecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 240 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 240 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
+||+- +.+....+.++.+ . +..||+++...+
T Consensus 202 lDEp~-------------d~e~~~~~~~~~~-------~-G~~vl~t~H~~~ 232 (356)
T 3jvv_A 202 VGEMR-------------DLETIRLALTAAE-------T-GHLVFGTLHTTS 232 (356)
T ss_dssp ESCCC-------------SHHHHHHHHHHHH-------T-TCEEEEEESCSS
T ss_pred cCCCC-------------CHHHHHHHHHHHh-------c-CCEEEEEEccCh
Confidence 99984 2444444444422 2 334778887654
No 143
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.59 E-value=4.7e-05 Score=66.33 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=28.6
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
++.++|.||||||||++++.+|+.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999887644
No 144
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.57 E-value=0.00029 Score=70.35 Aligned_cols=158 Identities=20% Similarity=0.216 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCC---hHHHHHHHHHHHHhcC-----CCCCCCeEEEEec----
Q 015875 220 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGD---NEVQRTMLEIVNQLDG-----FDARGNIKVLMAT---- 287 (399)
Q Consensus 220 ~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~---~~~~~~l~~ll~~l~~-----~~~~~~v~vI~at---- 287 (399)
....+.....+..+ +++|+||||+++..... .+++ ..+|+.|+++++--.. --...++.+|+|.
T Consensus 238 ~~~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~ 313 (444)
T 1g41_A 238 EELKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQV 313 (444)
T ss_dssp HHHHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSS
T ss_pred HHHHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccccc
Confidence 44455555555222 39999999999765321 2223 2377888888763110 0135678899887
Q ss_pred CCCCCCCccccCCCCceeEEEecCCCHHHHHHHHH--------HHHhcc---CCC---CcccHHHHHH-------HCCCC
Q 015875 288 NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK--------IHTRTM---NCE---RDIRFELLAR-------LCPNS 346 (399)
Q Consensus 288 n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~--------~~~~~~---~~~---~~~~~~~la~-------~~~g~ 346 (399)
+.+..+-|.|+. ||..+++|+.++.++..+|+. .+.+.+ +.. .+-.+..|+. .+...
T Consensus 314 ~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~ 391 (444)
T 1g41_A 314 ARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENI 391 (444)
T ss_dssp CCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCC
T ss_pred CChhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccC
Confidence 234445588887 999999999999999999983 121111 111 1222445554 34555
Q ss_pred cHHHHHHHHHHHHHHHHHHc------CCCccHHHHHHHHHHHH
Q 015875 347 TGADIRSVCTEAGMFAIRAR------RKTVTEKDFLDAVNKVI 383 (399)
Q Consensus 347 sg~di~~l~~~A~~~A~~~~------~~~It~ed~~~ai~~v~ 383 (399)
-.|.++.++..+...+..+- .-.||.+++.+.+....
T Consensus 392 GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 434 (444)
T 1g41_A 392 GARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 434 (444)
T ss_dssp GGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTT
T ss_pred CchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccc
Confidence 56777776666555433221 23489998887765543
No 145
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.55 E-value=0.0018 Score=58.63 Aligned_cols=160 Identities=18% Similarity=0.135 Sum_probs=83.2
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccc--------hhhhhh----------ch--hHHHHHHHHHHHHcC
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE--------LVQKYV----------GE--GARMVRELFQMARSK 233 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~--------l~~~~~----------g~--~~~~v~~~f~~a~~~ 233 (399)
.+++.|+||+|||+++-.+|..+ |..++.++... +..... +. .+..+..++. .
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~----~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK----A 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----H
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----c
Confidence 59999999999999999998764 55655444421 111100 00 1112222222 3
Q ss_pred CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC------------------CCCCCc
Q 015875 234 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR------------------PDTLDP 295 (399)
Q Consensus 234 ~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~------------------~~~ld~ 295 (399)
.|.++++||+-...... ......++. +..++. .++-|++|+|. .+.++.
T Consensus 84 ~pdlvIVDElG~~~~~~----~r~~~~~qD-V~~~l~--------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPG----SRHTKRWQD-IQELLA--------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp CCSEEEESCTTCBCCTT----CSSSBHHHH-HHHHHH--------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred CCCEEEEeCCCCCCccc----chhHHHHHH-HHHHHc--------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 57899999987642211 111222222 222222 24457788772 145555
Q ss_pred cccCCCCceeEEEecCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHCCCCcHHHHHHHHHHHHHHH
Q 015875 296 ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFA 362 (399)
Q Consensus 296 al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~A 362 (399)
.++. +.+.+.-+..|+.+-+ +.+....-..++..-..+. ..|+.+++.++-.-|...+
T Consensus 151 ~~~~--~a~~v~lvD~~p~~l~----~rl~~g~vy~~~~~~~a~~---~~f~~~nl~~lrelal~~~ 208 (228)
T 2r8r_A 151 WVLQ--EAFDLVLIDLPPRELL----ERLRDGKVYVPEQARAAID---AFFTQTNLTALREMAMQTA 208 (228)
T ss_dssp HHHH--TCSEEEEBCCCHHHHH----HHHHTTCCCCTTCCHHHHH---HHCCHHHHHHHHHHHHHHH
T ss_pred HHHh--hCCeEEEecCCHHHHH----HHHHCCCccChhHHHHHHH---hhhchhhHHHHHHHHHHHH
Confidence 6665 5666666666655422 2222222222222222233 3567778877766566554
No 146
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.55 E-value=4.9e-05 Score=66.44 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=29.2
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
...+..++|.|+||+||||+++.++..++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3456679999999999999999999999877654
No 147
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.54 E-value=0.00026 Score=65.20 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=33.2
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
..|..++|.|+||+||||+++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 446679999999999999999999999876777777665
No 148
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.48 E-value=5.9e-05 Score=65.95 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=33.4
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
+.++..+.|.||||+||||+++.++...+...+.++..++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4556679999999999999999999987777777876554
No 149
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.46 E-value=0.00036 Score=70.95 Aligned_cols=76 Identities=14% Similarity=0.301 Sum_probs=52.1
Q ss_pred CE-EEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC--CCCccccCCCCceeEEEecC
Q 015875 235 AC-IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD--TLDPALLRPGRLDRKVEFGL 311 (399)
Q Consensus 235 p~-il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~--~ld~al~r~gRf~~~i~~~~ 311 (399)
|. +|+|||+..+.... ..++...+.++.+.. ...++.+|++|.++. .++..++. .|...|.|..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~g----Ra~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQKA----RAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHHC----GGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHHh----hhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 89999998774311 123334444444432 234788999999986 57777776 7888999999
Q ss_pred CCHHHHHHHHHH
Q 015875 312 PDLESRTQIFKI 323 (399)
Q Consensus 312 P~~~er~~Il~~ 323 (399)
.+..+...|+..
T Consensus 364 ~s~~dsr~ilg~ 375 (512)
T 2ius_A 364 SSKIDSRTILDQ 375 (512)
T ss_dssp SSHHHHHHHHSS
T ss_pred CCHHHHHHhcCC
Confidence 999888887753
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.45 E-value=0.00022 Score=71.68 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=31.1
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEec
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 208 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~ 208 (399)
|+.+..-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 67888889999999999999999998743 456666654
No 151
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.44 E-value=0.00011 Score=63.67 Aligned_cols=32 Identities=31% Similarity=0.551 Sum_probs=28.1
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
.+..++|+|+||+|||++++.+++.++.+++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 45679999999999999999999999887654
No 152
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.42 E-value=0.0003 Score=63.78 Aligned_cols=38 Identities=29% Similarity=0.225 Sum_probs=29.6
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh----cCCceEEEec
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR----TDACFIRVIG 208 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~----~~~~~i~v~~ 208 (399)
|+++..-++|+|+||+|||++|..+|.. .+.+++.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 6777888999999999999999887643 2556666654
No 153
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.41 E-value=0.00011 Score=63.11 Aligned_cols=30 Identities=27% Similarity=0.575 Sum_probs=26.3
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i 204 (399)
+..+.|.||+|+||||+++.++..++.+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356999999999999999999999887554
No 154
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.41 E-value=8.8e-05 Score=63.42 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=27.3
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
.|+|.||||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998876543
No 155
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.39 E-value=8e-05 Score=65.16 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=26.6
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHh-cCCceE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANR-TDACFI 204 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~-~~~~~i 204 (399)
.+..++|+|+||||||++++.++.. ++.+++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 3456999999999999999999998 676654
No 156
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.38 E-value=0.00011 Score=63.55 Aligned_cols=29 Identities=38% Similarity=0.600 Sum_probs=26.3
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
.++|.|+||+||||+++.+|..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987653
No 157
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.38 E-value=0.00025 Score=66.80 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=29.6
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEe
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVI 207 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~ 207 (399)
|+.+..-++|.||||+|||+|++.++... |.+++.++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 67778889999999999999999999754 43555544
No 158
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.37 E-value=0.00016 Score=74.91 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=25.5
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhc---CCceEEEe
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRT---DACFIRVI 207 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~---~~~~i~v~ 207 (399)
..++|.||||||||+++.+++..+ +.+++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 479999999999999999998754 55555443
No 159
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.36 E-value=0.00016 Score=68.16 Aligned_cols=39 Identities=31% Similarity=0.481 Sum_probs=31.7
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
..|..++|.||||+||||+++.++.+++..++.+++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 345679999999999999999999988656677776444
No 160
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.35 E-value=0.0016 Score=64.89 Aligned_cols=195 Identities=15% Similarity=0.085 Sum_probs=101.2
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh----------h----------hhchhHHHHHHHHHHH
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ----------K----------YVGEGARMVRELFQMA 230 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~----------~----------~~g~~~~~v~~~f~~a 230 (399)
+|..+++.|++|+||||++..+|..+ +..+..+.+..+.. . ........++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46679999999999999999999755 55555555432211 0 0122344556777777
Q ss_pred HcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE-ecCCCCCCC--ccccCCCCceeEE
Q 015875 231 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM-ATNRPDTLD--PALLRPGRLDRKV 307 (399)
Q Consensus 231 ~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~-atn~~~~ld--~al~r~gRf~~~i 307 (399)
+...+.+++||....+.. +......+..+..... ...++++. ++...+.++ ..+.....+. .+
T Consensus 179 ~~~~~DvVIIDTaGrl~~---------d~~lm~el~~i~~~~~----pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~-gV 244 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE---------DKALIEEMKQISNVIH----PHEVILVIDGTIGQQAYNQALAFKEATPIG-SI 244 (443)
T ss_dssp HHTTCSEEEEECCCCSSC---------CHHHHHHHHHHHHHHC----CSEEEEEEEGGGGGGHHHHHHHHHHSCTTE-EE
T ss_pred HhCCCCEEEEECCCcccc---------hHHHHHHHHHHHHhhc----CceEEEEEeCCCchhHHHHHHHHHhhCCCe-EE
Confidence 777778999998865521 3444444444444332 23344444 332111111 0111111221 23
Q ss_pred EecCCCHHHHHHHHHHHHhccCC-------C------CcccHHHHHHHCCCCcHHHHHHHHHHHHH----------HHHH
Q 015875 308 EFGLPDLESRTQIFKIHTRTMNC-------E------RDIRFELLARLCPNSTGADIRSVCTEAGM----------FAIR 364 (399)
Q Consensus 308 ~~~~P~~~er~~Il~~~~~~~~~-------~------~~~~~~~la~~~~g~sg~di~~l~~~A~~----------~A~~ 364 (399)
-+.--|...+...+.......+. . ...+.+.++...-| .+|+..++..|.. .+.+
T Consensus 245 IlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg--~gd~~~l~e~~~~~~~~~~~~~~~~~k 322 (443)
T 3dm5_A 245 IVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLG--LGDIQGLLEKFKELEKEVEIKEEDIER 322 (443)
T ss_dssp EEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTT--TTCHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcC--CCcHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33333333332221111111111 1 22456777766544 2477777755432 2222
Q ss_pred HcCCCccHHHHHHHHHHHHh
Q 015875 365 ARRKTVTEKDFLDAVNKVIK 384 (399)
Q Consensus 365 ~~~~~It~ed~~~ai~~v~~ 384 (399)
-.....|-+||.+-++.+.+
T Consensus 323 ~~~~~f~l~d~~~q~~~~~k 342 (443)
T 3dm5_A 323 FLRGKFTLKDMYAQLEAMRK 342 (443)
T ss_dssp HHTTCCCHHHHHHHHHHHHT
T ss_pred HhhCCcCHHHHHHHHHHHHh
Confidence 23455899999998888754
No 161
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.34 E-value=0.00015 Score=63.03 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=26.9
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
..|+|.|+||+|||++|+.++..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 359999999999999999999999988754
No 162
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.32 E-value=0.00039 Score=64.38 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=31.2
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh---cCCceEEEeccchh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELV 212 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~---~~~~~i~v~~s~l~ 212 (399)
+.-|+|.|+||+||||+|+.++.. .+.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 446999999999999999999997 67887766665544
No 163
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.32 E-value=0.0018 Score=57.37 Aligned_cols=117 Identities=16% Similarity=0.152 Sum_probs=65.5
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhc---CCceEEEecc---------chhhhhh-------------c----hhHHHHHHH
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS---------ELVQKYV-------------G----EGARMVREL 226 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s---------~l~~~~~-------------g----~~~~~v~~~ 226 (399)
..+++|+++|.|||++|-++|-+. |..+..+..- .++.... . +........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 469999999999999999998764 5665555321 1333320 0 012233444
Q ss_pred HHHHH----cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCCCccccCCCC
Q 015875 227 FQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 302 (399)
Q Consensus 227 f~~a~----~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gR 302 (399)
+..++ ....++|+|||+-....-..- + ...+++++.. ...+.-||+|+|.+ ++.|+. .
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l-----~---~~ev~~~l~~-----Rp~~~~vIlTGr~a---p~~l~e--~ 170 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYL-----P---LEEVISALNA-----RPGHQTVIITGRGC---HRDILD--L 170 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSS-----C---HHHHHHHHHT-----SCTTCEEEEECSSC---CHHHHH--H
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCC-----C---HHHHHHHHHh-----CcCCCEEEEECCCC---cHHHHH--h
Confidence 44443 356789999999442111000 1 1234555542 24466789999874 344444 4
Q ss_pred ceeEEEec
Q 015875 303 LDRKVEFG 310 (399)
Q Consensus 303 f~~~i~~~ 310 (399)
-|.+-++.
T Consensus 171 AD~VTem~ 178 (196)
T 1g5t_A 171 ADTVSELR 178 (196)
T ss_dssp CSEEEECC
T ss_pred Ccceeeec
Confidence 44444443
No 164
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.31 E-value=0.00028 Score=62.33 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=21.0
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~ 199 (399)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999999865
No 165
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.31 E-value=8.3e-05 Score=69.22 Aligned_cols=72 Identities=21% Similarity=0.360 Sum_probs=42.1
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcC---CceEEEeccch---h--------hhhhchhHHHHHHHHHHHHcCCCEEE
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSEL---V--------QKYVGEGARMVRELFQMARSKKACIV 238 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~---~~~i~v~~s~l---~--------~~~~g~~~~~v~~~f~~a~~~~p~il 238 (399)
.+...++|.||+|+||||++++++.... .--+.+....+ . +..+|.....++..+..+-...|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 4556799999999999999999998542 11222222111 0 00011111122444444444578899
Q ss_pred EEecCC
Q 015875 239 FFDEVD 244 (399)
Q Consensus 239 ~iDEiD 244 (399)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999984
No 166
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.30 E-value=0.00016 Score=61.96 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=27.8
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
..++|.|+|||||||+++.++..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999887643
No 167
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.27 E-value=0.00021 Score=63.16 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=28.1
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
.+..|+|.|+||+||||+|+.++..++.+++.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 345699999999999999999999998876543
No 168
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.26 E-value=0.00016 Score=62.58 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.1
Q ss_pred CCCCceeEeCCCCCcHHHHHHH
Q 015875 173 DPPKGVLCYGPPGTGKTLLARA 194 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~lara 194 (399)
.++.-+.|.||+|+|||||+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4556799999999999999994
No 169
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.25 E-value=0.00021 Score=64.19 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=27.7
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
++..++|.|+||+||||+++.+++.++.+++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 35579999999999999999999999876544
No 170
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.25 E-value=0.0016 Score=64.94 Aligned_cols=197 Identities=13% Similarity=0.113 Sum_probs=98.2
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh----------hhh----------chhHHHHHHHHHHH
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ----------KYV----------GEGARMVRELFQMA 230 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~----------~~~----------g~~~~~v~~~f~~a 230 (399)
+|..+++.||+|+||||++..+|..+ +..+..+.+..... ... ..........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45679999999999999999999755 55555554432110 000 11223344556666
Q ss_pred HcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCC-CCCCCc--cccCCCCceeEE
Q 015875 231 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-PDTLDP--ALLRPGRLDRKV 307 (399)
Q Consensus 231 ~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~-~~~ld~--al~r~gRf~~~i 307 (399)
....+.++++|....+... .+......+..+...+. ...+++++.+.. .+.++. .+.....+ ..+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-------~d~~lm~el~~i~~~~~----pd~vlLVlDa~~gq~a~~~a~~f~~~~~~-~gV 243 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-------EETKLLEEMKEMYDVLK----PDDVILVIDASIGQKAYDLASRFHQASPI-GSV 243 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-------CTTHHHHHHHHHHHHHC----CSEEEEEEEGGGGGGGHHHHHHHHHHCSS-EEE
T ss_pred HhcCCCEEEEECCCCcccc-------CCHHHHHHHHHHHHhhC----CcceEEEEeCccchHHHHHHHHHhcccCC-cEE
Confidence 6667889999998665200 13444455555555442 234444444322 111110 11100011 233
Q ss_pred EecCCCHHHH----HHHHHHHHhc---c----CCC--CcccHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH---------
Q 015875 308 EFGLPDLESR----TQIFKIHTRT---M----NCE--RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA--------- 365 (399)
Q Consensus 308 ~~~~P~~~er----~~Il~~~~~~---~----~~~--~~~~~~~la~~~~g~sg~di~~l~~~A~~~A~~~--------- 365 (399)
-+.--|...+ ..+....-.. . ++. ...+.+.++...-|. +|+..++..|.......
T Consensus 244 IlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~~~~~k~ 321 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGM--GDIESILEKVKGLEEYDKIQKKMEDV 321 (433)
T ss_dssp EEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCS--SHHHHHHHHHHHC-------------
T ss_pred EEecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCC--chHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3443333222 2222221111 0 111 223466666654332 47888877665422111
Q ss_pred cCC--CccHHHHHHHHHHHHh
Q 015875 366 RRK--TVTEKDFLDAVNKVIK 384 (399)
Q Consensus 366 ~~~--~It~ed~~~ai~~v~~ 384 (399)
... ..|.+||.+-++.+.+
T Consensus 322 ~~g~~~f~~~d~~~q~~~~~k 342 (433)
T 3kl4_A 322 MEGKGKLTLRDVYAQIIALRK 342 (433)
T ss_dssp ------CCHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHh
Confidence 122 6999999999998864
No 171
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.24 E-value=0.0014 Score=66.92 Aligned_cols=114 Identities=22% Similarity=0.245 Sum_probs=69.1
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHH--HHhc--CCceEEEeccchhhh------hhc-----------------------
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAV--ANRT--DACFIRVIGSELVQK------YVG----------------------- 217 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~laral--a~~~--~~~~i~v~~s~l~~~------~~g----------------------- 217 (399)
++++...++|.||+|+|||+|++.+ +... +..-+.+++.+.... .+|
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~ 114 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 114 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccch
Confidence 3566778999999999999999994 4432 444556655331100 000
Q ss_pred -----h--hHHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 218 -----E--GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 218 -----~--~~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
. ................|.+|+|||+-.+... .+.+......+..++..+.. .++.||++|+..
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~ 185 (525)
T 1tf7_A 115 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLKQ----IGATTVMTTERI 185 (525)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHHH----HTCEEEEEEECS
T ss_pred hhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHHH----CCCEEEEEecCC
Confidence 0 1112233344444567789999999876432 11245667778888877642 245677777776
Q ss_pred CCC
Q 015875 291 DTL 293 (399)
Q Consensus 291 ~~l 293 (399)
+.+
T Consensus 186 ~~~ 188 (525)
T 1tf7_A 186 EEY 188 (525)
T ss_dssp SSS
T ss_pred CCc
Confidence 553
No 172
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.24 E-value=0.00049 Score=68.85 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=31.1
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEec
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 208 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~ 208 (399)
|+.+..-++|.|+||+|||++|..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 67888889999999999999999998743 556666654
No 173
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.23 E-value=0.00017 Score=66.58 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=28.3
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEec
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIG 208 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~ 208 (399)
.++|.||||+|||++|+.+|..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988776654
No 174
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.23 E-value=0.00025 Score=62.66 Aligned_cols=31 Identities=29% Similarity=0.546 Sum_probs=27.2
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
+..++|.|++|+||||+++.++..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999876654
No 175
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.22 E-value=0.00019 Score=62.54 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=29.0
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
|..|+|.|+||+||||+++.+++.++.+++ +..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 456999999999999999999999987654 444443
No 176
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.22 E-value=0.0002 Score=62.62 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=27.8
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
.+..++|.|+||+||||+++.+++.++.+++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 45679999999999999999999999877553
No 177
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.21 E-value=0.00025 Score=60.79 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=26.6
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
..++|.|+||+|||++++.++..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999987654
No 178
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.20 E-value=0.00017 Score=62.70 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=25.9
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i 204 (399)
+..++|.|+||+||||+++.+++.++.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 346899999999999999999999886654
No 179
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.20 E-value=0.00016 Score=62.64 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=23.3
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i 204 (399)
+..++|.|+||+||||+++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456999999999999999999999998876
No 180
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.19 E-value=0.00024 Score=60.53 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=25.2
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
.++|.||||+||||+++.+ ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8888876543
No 181
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.18 E-value=0.00016 Score=62.19 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=22.8
Q ss_pred CceeEeCCCCCcHHHHHHHHHH-hcCCc
Q 015875 176 KGVLCYGPPGTGKTLLARAVAN-RTDAC 202 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~-~~~~~ 202 (399)
..++|.|+||+||||+|+.+++ .++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 4689999999999999999998 45533
No 182
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.18 E-value=0.0036 Score=59.45 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=46.4
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh-------hh-------------hchhHHHHHHHHHH
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-------KY-------------VGEGARMVRELFQM 229 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~-------~~-------------~g~~~~~v~~~f~~ 229 (399)
.++..++|.||+|+||||++..+|..+ +..+..+++..+.. .+ .+.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456679999999999999999999864 44454444322110 00 11222333344555
Q ss_pred HHcCCCEEEEEecCCc
Q 015875 230 ARSKKACIVFFDEVDA 245 (399)
Q Consensus 230 a~~~~p~il~iDEiD~ 245 (399)
+....+.++++|+.-.
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5667788999998764
No 183
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.18 E-value=0.0013 Score=67.26 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=66.1
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhhhh------hc----------------------hh
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------VG----------------------EG 219 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~~~------~g----------------------~~ 219 (399)
++.+...++|.||+|+|||+|++.++... +...+.+...+-.... .| .+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 56777889999999999999999999753 4445555432211000 00 12
Q ss_pred HHHHHHHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 220 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 220 ~~~v~~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
....+.++..+....|.+|+||=+..+-.. .........+.+++..+.. .++.+|+++...
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~------~~~~~~~~~i~~ll~~l~~----~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG------VSNNAFRQFVIGVTGYAKQ----EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS------SCHHHHHHHHHHHHHHHHH----TTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh------CChHHHHHHHHHHHHHHHh----CCCEEEEEECcc
Confidence 334455666667788999999954444211 0112356666677766642 245566666543
No 184
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.18 E-value=0.00023 Score=64.28 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=27.3
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
.+..++|.|+||+||||+++.+++.++.+++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 45679999999999999999999999876553
No 185
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.17 E-value=0.00024 Score=64.24 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=31.1
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhh
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 213 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~ 213 (399)
..++-|+|.||||+||+|.|+.|++.++.+. ++..+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 4566789999999999999999999998654 45555543
No 186
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.16 E-value=0.00021 Score=69.97 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=45.7
Q ss_pred HHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC----CceEEEecc-ch---------hhhhhchhHHHHHHHHHHHHc
Q 015875 167 FVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGS-EL---------VQKYVGEGARMVRELFQMARS 232 (399)
Q Consensus 167 ~~~~g~~~~~~vLL~GppGtGKT~larala~~~~----~~~i~v~~s-~l---------~~~~~g~~~~~v~~~f~~a~~ 232 (399)
+..+.+.+...++|.||+|+||||++++++.... ..++.+... ++ .+..+|.....+...+..+-.
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 3344445666799999999999999999998542 233232211 00 010011111122344455555
Q ss_pred CCCEEEEEecCC
Q 015875 233 KKACIVFFDEVD 244 (399)
Q Consensus 233 ~~p~il~iDEiD 244 (399)
..|.+|++||+-
T Consensus 208 ~~pd~illdE~~ 219 (372)
T 2ewv_A 208 EDPDVIFVGEMR 219 (372)
T ss_dssp SCCSEEEESCCC
T ss_pred hCcCEEEECCCC
Confidence 689999999984
No 187
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.16 E-value=0.00023 Score=61.91 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=23.2
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~ 200 (399)
..++|.|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999886
No 188
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.15 E-value=0.00031 Score=62.12 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=29.0
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
.++..+.|.||+|+||||+++.++..+|.. .+++..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEccccc
Confidence 345679999999999999999999988654 4555444
No 189
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.15 E-value=0.00022 Score=63.99 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=27.6
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
+..++|.|+||+||||+++.++..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 34699999999999999999999998776543
No 190
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.15 E-value=0.00077 Score=61.50 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=28.7
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEecc-chh
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGS-ELV 212 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s-~l~ 212 (399)
.+++.||+|+|||.++.+++...+...+.+... ++.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 499999999999999999998887666666543 443
No 191
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.14 E-value=0.0011 Score=63.17 Aligned_cols=38 Identities=26% Similarity=0.150 Sum_probs=30.7
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 208 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~ 208 (399)
|+.+..-++|.|+||+|||+++..+|... +.+.+.++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 67888889999999999999999998653 456666654
No 192
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.13 E-value=0.0003 Score=60.94 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=31.9
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccch
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 211 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l 211 (399)
++..+.|.|++|+||||+++.++..+ +.+++.++...+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 45568999999999999999999987 888888875433
No 193
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.12 E-value=0.0003 Score=60.58 Aligned_cols=35 Identities=31% Similarity=0.421 Sum_probs=28.0
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
+..++|.||+|+||||+++.++..++..+ ++...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 44689999999999999999999887554 454444
No 194
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.12 E-value=0.00035 Score=63.39 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=27.6
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
+..++|.|+||+||||+++.+++.++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45799999999999999999999998766543
No 195
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.11 E-value=0.0015 Score=60.72 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=32.8
Q ss_pred CCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 234 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 234 ~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
.|.+|++||--+- -|...+..+.+++..+. ...+..||++|+..+
T Consensus 165 ~p~lLllDEPts~----------LD~~~~~~i~~~l~~l~---~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 165 TPRWLFLDEPTSA----------LDLYHQQHTLRLLRQLT---RQEPLAVCCVLHDLN 209 (266)
T ss_dssp CCEEEEECCCCSS----------CCHHHHHHHHHHHHHHH---HHSSEEEEEECSCHH
T ss_pred CCCEEEEeCcccc----------CCHHHHHHHHHHHHHHH---HcCCCEEEEEEcCHH
Confidence 8999999996543 37788888888887763 134566888887653
No 196
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.11 E-value=0.00029 Score=61.70 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=29.0
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
+..|+|.|+||+||||+++.+++.++.+++ +..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~ 47 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGELL 47 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHH
Confidence 457999999999999999999999986544 444443
No 197
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.09 E-value=0.00037 Score=59.41 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=26.1
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
.|+|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999987654
No 198
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.09 E-value=0.00033 Score=60.85 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=26.7
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
+..++|.|+||+||||+++.+++.++.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 4569999999999999999999998866543
No 199
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.09 E-value=0.00027 Score=63.52 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=27.0
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~~i 204 (399)
.+..++|.||||+||||+++.+++.++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3567999999999999999999999986554
No 200
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.09 E-value=0.00035 Score=62.37 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=26.0
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
.++|.||||+||||+|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998776543
No 201
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.08 E-value=0.00034 Score=64.17 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=28.1
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
.+|..|+|.||||+||||+|+.+++.++.+++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 356679999999999999999999998866543
No 202
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.07 E-value=0.00037 Score=62.17 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=26.0
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
.++|.||||+||||+|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998776543
No 203
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.06 E-value=0.00094 Score=63.89 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=29.6
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEEEec
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 208 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~v~~ 208 (399)
..++|.||+|+|||++++.+|++++..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 469999999999999999999999988887754
No 204
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.06 E-value=0.0026 Score=69.54 Aligned_cols=44 Identities=30% Similarity=0.300 Sum_probs=36.3
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
.+|.+..+++|.+.+.. ....+-+.|+|+.|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~------------~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLE------------LRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHH------------CCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhc------------cCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 48999999999998753 123467999999999999999999863
No 205
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.05 E-value=0.0027 Score=61.75 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=33.2
Q ss_pred cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 232 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 232 ~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
...|.+|++||--+- -|...+..+++++..+.. ..++.||++|...
T Consensus 179 ~~~P~lLLlDEPTs~----------LD~~~~~~i~~lL~~l~~---~~g~Tii~vTHdl 224 (366)
T 3tui_C 179 ASNPKVLLCDQATSA----------LDPATTRSILELLKDINR---RLGLTILLITHEM 224 (366)
T ss_dssp TTCCSEEEEESTTTT----------SCHHHHHHHHHHHHHHHH---HSCCEEEEEESCH
T ss_pred hcCCCEEEEECCCcc----------CCHHHHHHHHHHHHHHHH---hCCCEEEEEecCH
Confidence 357889999996543 378888888888887631 2245678888764
No 206
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.05 E-value=0.00038 Score=61.44 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=26.7
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
+..|+|.|+||+||||+++.+++.++.+++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4468999999999999999999998876544
No 207
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.04 E-value=0.0007 Score=65.07 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=47.1
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcC--CceEEEeccchhh-----h---hhchhHHHHHHHHHHHHcCCCEEEEEec
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQ-----K---YVGEGARMVRELFQMARSKKACIVFFDE 242 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~--~~~i~v~~s~l~~-----~---~~g~~~~~v~~~f~~a~~~~p~il~iDE 242 (399)
.+...++|.||+|+||||++++++.... ...+.+....... . ++..+....+..+..+-...|.+|++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 3456899999999999999999998753 2345554432110 0 1100122334555666677899999999
Q ss_pred CCc
Q 015875 243 VDA 245 (399)
Q Consensus 243 iD~ 245 (399)
.-.
T Consensus 249 ~~~ 251 (330)
T 2pt7_A 249 LRS 251 (330)
T ss_dssp CCS
T ss_pred CCh
Confidence 754
No 208
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.03 E-value=0.0042 Score=57.39 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=24.6
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.+...+.|.||+|+|||||++.++...
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34566779999999999999999999854
No 209
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.00 E-value=0.00046 Score=60.99 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=29.9
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccch
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 211 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l 211 (399)
.++..+.|.||+|+||||+++.++..+ |...+.++...+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 455679999999999999999999987 444445655443
No 210
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.99 E-value=0.00046 Score=61.79 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=27.9
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
.++|.||||+||+|.|+.|++.++.+. ++..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 378999999999999999999998765 4545554
No 211
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.99 E-value=0.0026 Score=59.50 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=33.8
Q ss_pred cCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 015875 232 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 293 (399)
Q Consensus 232 ~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 293 (399)
...|.+|++||--+- -|...+..+.+++..+.. .. +..||++|...+.+
T Consensus 159 ~~~P~lLlLDEPts~----------LD~~~~~~i~~~l~~l~~--~~-g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 159 VMEPKVLILDEPTAG----------LDPMGVSEIMKLLVEMQK--EL-GITIIIATHDIDIV 207 (275)
T ss_dssp TTCCSEEEEECTTTT----------CCHHHHHHHHHHHHHHHH--HH-CCEEEEEESCCSSG
T ss_pred HcCCCEEEEECcccc----------CCHHHHHHHHHHHHHHHh--hC-CCEEEEEecCHHHH
Confidence 357889999996543 377788888888877631 11 45688888876543
No 212
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.97 E-value=0.0025 Score=62.39 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=24.1
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|||||||.+.|+...
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4556679999999999999999999853
No 213
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.94 E-value=0.00034 Score=67.74 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=26.1
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
.++|+||||+|||++++++|..++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 59999999999999999999998877744
No 214
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.94 E-value=0.00068 Score=59.62 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=28.8
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc-CCceEEEe
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT-DACFIRVI 207 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~-~~~~i~v~ 207 (399)
.+..+.|.|++|+||||+++.+++.+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 35579999999999999999999998 57777665
No 215
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.93 E-value=0.00065 Score=60.89 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=25.8
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i 204 (399)
..+.|.||+|+||||+++.++..++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 46899999999999999999999887654
No 216
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.91 E-value=0.00049 Score=59.74 Aligned_cols=33 Identities=21% Similarity=0.126 Sum_probs=26.0
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcC---CceEEEecc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGS 209 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~---~~~i~v~~s 209 (399)
.|+|.|+||+||||+++.+++.++ ..+..++..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 489999999999999999999875 235555433
No 217
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.91 E-value=0.00073 Score=58.76 Aligned_cols=31 Identities=19% Similarity=0.073 Sum_probs=27.4
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc---CCceEEEe
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT---DACFIRVI 207 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~---~~~~i~v~ 207 (399)
.+.|.|++|+||||+++.+++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 88887665
No 218
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.91 E-value=0.00064 Score=62.16 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=26.9
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~~i 204 (399)
.+..+.|.||+|+||||+++.+++.++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3568999999999999999999998876543
No 219
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.90 E-value=0.00046 Score=63.72 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=28.5
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
...+.|.|++|+||||+++.+|..++.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 56799999999999999999999999877653
No 220
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.89 E-value=0.00061 Score=59.79 Aligned_cols=29 Identities=14% Similarity=0.417 Sum_probs=25.8
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
.+.|.|++|+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999886653
No 221
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.88 E-value=0.003 Score=68.52 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=56.4
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHh-----cCCc--------------eEEEeccchhhhhhchhHHHHHHHHHHH-Hc
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANR-----TDAC--------------FIRVIGSELVQKYVGEGARMVRELFQMA-RS 232 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~-----~~~~--------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a-~~ 232 (399)
.+...+.|.||.|+||||+.|.++.- .+.. |-.+...+......+....-..++...+ ..
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a 750 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKA 750 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhc
Confidence 44567999999999999999998742 1211 1111111111111122222222222222 24
Q ss_pred CCCEEEEEecCCcccCCccCCCCCCChHHHHHHH-HHHHHhcCCCCCCCeEEEEecCCCCC
Q 015875 233 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGFDARGNIKVLMATNRPDT 292 (399)
Q Consensus 233 ~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~-~ll~~l~~~~~~~~v~vI~atn~~~~ 292 (399)
..|++|++||.-+= -+......+. .+++.+.. ..+..+|++|+..+.
T Consensus 751 ~~p~LlLLDEP~~G----------lD~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el 798 (918)
T 3thx_B 751 TSQSLVILDELGRG----------TSTHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPV 798 (918)
T ss_dssp CTTCEEEEESTTTT----------SCHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGG
T ss_pred cCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHH
Confidence 67899999998653 2444444443 66665521 235678888887543
No 222
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.87 E-value=0.005 Score=59.71 Aligned_cols=28 Identities=36% Similarity=0.547 Sum_probs=24.1
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|||||||.+.|+...
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4556679999999999999999999853
No 223
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.87 E-value=0.0044 Score=60.15 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=24.0
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|||||||.+.++...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4556678999999999999999999853
No 224
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.87 E-value=0.00062 Score=60.79 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=26.1
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
.++|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998776543
No 225
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.84 E-value=0.0041 Score=60.28 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=23.9
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|||||||.+.|+...
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4556679999999999999999999853
No 226
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.82 E-value=0.00077 Score=60.75 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=27.2
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
.++|.|+||+||||+++.++..++.++ ++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~--i~~dd~~ 35 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAH--IESGGIF 35 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE--EchHHHH
Confidence 478999999999999999999998654 4443443
No 227
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.80 E-value=0.00089 Score=61.13 Aligned_cols=30 Identities=33% Similarity=0.513 Sum_probs=26.6
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i 204 (399)
+..+.|.||||+|||++++.+++.++.+++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 457999999999999999999999987654
No 228
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.79 E-value=0.0036 Score=66.96 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=38.4
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCCCChh-HHHhhCCCCCCceeEeCCCCCcHHHHHHHHHH
Q 015875 134 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPE-KFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 134 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~-~~~~~g~~~~~~vLL~GppGtGKT~larala~ 197 (399)
..+..+|++++-.+...+.+.+.-..|..... .+.. .+.....+++.||+|+|||+++..++.
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~-~l~~~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLK-LYQNNQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHH-HHhCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34556777777666666666555444432211 1111 122345799999999999997777654
No 229
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.79 E-value=0.001 Score=58.07 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=26.0
Q ss_pred eeEeCCCCCcHHHHHHHHHHhc---CCceEEEe
Q 015875 178 VLCYGPPGTGKTLLARAVANRT---DACFIRVI 207 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~---~~~~i~v~ 207 (399)
|.|.|++|+||||+++.+++.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 88887654
No 230
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.78 E-value=0.0026 Score=64.50 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=31.1
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEec
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 208 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~ 208 (399)
|+.+..-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 67777889999999999999999998754 456776664
No 231
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.78 E-value=0.0043 Score=60.34 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.0
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|||||||.+.++...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4556678999999999999999999853
No 232
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.73 E-value=0.0059 Score=53.69 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.0
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
+.+++.+|+|+|||+++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999998887764
No 233
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.73 E-value=0.0012 Score=58.16 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=24.6
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDAC 202 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~ 202 (399)
+.-|+|.|+||+||||+++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3468999999999999999999988763
No 234
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.73 E-value=0.00097 Score=58.73 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=26.3
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
.+.|.|++|+|||++++.++..++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 68899999999999999999999977654
No 235
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.72 E-value=0.00042 Score=61.44 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=25.0
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCc
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDAC 202 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~ 202 (399)
.+..|+|.|+||+||||+++.+++.++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45679999999999999999999987544
No 236
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.71 E-value=0.0069 Score=54.76 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=18.2
Q ss_pred CCceeEeCCCCCcHHHHHHHHH
Q 015875 175 PKGVLCYGPPGTGKTLLARAVA 196 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala 196 (399)
...+++.||+|||||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4679999999999998766554
No 237
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.71 E-value=0.00093 Score=58.92 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.3
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
.+.|.|++|+||||+++.++. ++.+++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 488999999999999999999 7766544
No 238
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.70 E-value=0.0058 Score=59.05 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=24.1
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|||||||.+.++...
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 4566679999999999999999999854
No 239
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.69 E-value=0.0011 Score=58.67 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=25.7
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
..++..++|.||||+||||+++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45677899999999999999999999874
No 240
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.68 E-value=0.00098 Score=58.93 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=25.9
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
.+.|.||+|+||||+++.++. +|.+++ +...+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~ 35 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVV 35 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHH
Confidence 478999999999999999998 777664 44444
No 241
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.68 E-value=0.0039 Score=60.89 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=23.9
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|||||||.+.|+...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4456679999999999999999999853
No 242
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.67 E-value=0.0005 Score=60.99 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=24.4
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCC
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDA 201 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~ 201 (399)
.+..|+|.|+||+||||+++.+++.++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567999999999999999999997643
No 243
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.67 E-value=0.0053 Score=66.78 Aligned_cols=103 Identities=16% Similarity=0.065 Sum_probs=52.7
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh-----cCCc--------------eEEEeccchhhhhhchhHHHHHHHHHHH-HcCC
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR-----TDAC--------------FIRVIGSELVQKYVGEGARMVRELFQMA-RSKK 234 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~-----~~~~--------------~i~v~~s~l~~~~~g~~~~~v~~~f~~a-~~~~ 234 (399)
+..++|.||.|+||||+.|.++-- .|.. +-++...+........+.....++...+ ....
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~ 741 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATK 741 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccC
Confidence 456999999999999999999531 2221 1111111111111111222222222222 1467
Q ss_pred CEEEEEecCCcccCCccCCCCCCChHHHHHH-HHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 235 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTM-LEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 235 p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l-~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
|++|+|||.-+= .+......+ ..+++.+.. ..+..+|++|+..
T Consensus 742 ~sLlLLDEp~~G----------lD~~~~~~i~~~il~~l~~---~~g~~vl~aTH~~ 785 (934)
T 3thx_A 742 DSLIIIDELGRG----------TSTYDGFGLAWAISEYIAT---KIGAFCMFATHFH 785 (934)
T ss_dssp TCEEEEESCSCS----------SCHHHHHHHHHHHHHHHHH---TTCCEEEEEESCG
T ss_pred CcEEEEeCCCCC----------CCHHHHHHHHHHHHHHHHh---cCCCEEEEEcCcH
Confidence 899999998653 244333333 555555531 2345678888764
No 244
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.67 E-value=0.0011 Score=57.56 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
+++-+.|.||+|+|||||++.++....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345799999999999999999998653
No 245
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.64 E-value=0.0014 Score=60.38 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=26.4
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i 204 (399)
...+.|.||+|+||||+++.+++.++..++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 456899999999999999999999987654
No 246
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.63 E-value=0.0036 Score=62.62 Aligned_cols=38 Identities=26% Similarity=0.150 Sum_probs=31.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 208 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~ 208 (399)
|+.+..-++|.|+||+|||++|..+|... +.+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 67888889999999999999999998754 566666654
No 247
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.63 E-value=0.0011 Score=58.08 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=28.0
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
+..|.|.|++|+||||+++.+++. +.+++ +...+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~ 42 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALA 42 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHH
Confidence 456999999999999999999998 76654 444444
No 248
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.61 E-value=0.0022 Score=56.65 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=29.3
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhhh
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 215 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~~ 215 (399)
.+.|.|++||||||+++.+++.+|.+++ ++..+....
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~~~ 50 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGHEV 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHHHH
Confidence 4889999999999999999998887764 455554433
No 249
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.60 E-value=0.0012 Score=58.18 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.++..+.|.||+|+||||+++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456679999999999999999999876
No 250
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.59 E-value=0.007 Score=57.44 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=25.2
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+++...+.|.||+|+|||||++.++...
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 35677789999999999999999999854
No 251
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.58 E-value=0.00093 Score=64.23 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=29.8
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEecc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 209 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s 209 (399)
++.++|.||+|+|||+|+..||++++..++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34699999999999999999999998887766543
No 252
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.57 E-value=0.0017 Score=59.51 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=31.8
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCc--------eEEEeccchhh
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDAC--------FIRVIGSELVQ 213 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~--------~i~v~~s~l~~ 213 (399)
.+..|.|.|++|+||||+|+.++..++.+ ...++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 34569999999999999999999998876 33566666643
No 253
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.54 E-value=0.0021 Score=55.88 Aligned_cols=37 Identities=27% Similarity=0.199 Sum_probs=28.5
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccc
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE 210 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~ 210 (399)
++..++|.|+||+||||+++.++..+ +..+..++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 45579999999999999999999876 34455555433
No 254
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.51 E-value=0.0019 Score=57.43 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.8
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
++.-+.|.||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456799999999999999999998764
No 255
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.50 E-value=0.011 Score=51.62 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=17.9
Q ss_pred CCceeEeCCCCCcHHHHH-HHHHHh
Q 015875 175 PKGVLCYGPPGTGKTLLA-RAVANR 198 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~la-rala~~ 198 (399)
.+.+++.+|+|+|||..+ -.+...
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 367999999999999864 333343
No 256
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.50 E-value=0.0014 Score=62.17 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=29.0
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEec
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 208 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~ 208 (399)
+.-++|.||+|+|||+||..+|..++..++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 4568899999999999999999999877766543
No 257
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.50 E-value=0.0017 Score=58.03 Aligned_cols=30 Identities=30% Similarity=0.262 Sum_probs=25.1
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
+..+.|.|++|+||||+++.++. ++.+++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 44689999999999999999998 7766543
No 258
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.49 E-value=0.0012 Score=58.43 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=25.1
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc-CCce
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT-DACF 203 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~-~~~~ 203 (399)
.++.-+.|.|++|+||||+++.++..+ +..+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~ 50 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSV 50 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 334568899999999999999999877 4443
No 259
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.49 E-value=0.002 Score=57.47 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=27.0
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
|..+.|.|++|+|||++++.++..++.+++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 3469999999999999999999999877643
No 260
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.47 E-value=0.0067 Score=53.60 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=25.7
Q ss_pred CCceeEeCCCCCcHH-HHHHHHHHhc--CCceEEEe
Q 015875 175 PKGVLCYGPPGTGKT-LLARAVANRT--DACFIRVI 207 (399)
Q Consensus 175 ~~~vLL~GppGtGKT-~larala~~~--~~~~i~v~ 207 (399)
.+-.++|||.|+||| .|.+++.+.. +..++.+.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 345889999999999 8999998743 55666664
No 261
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.47 E-value=0.013 Score=62.83 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.4
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHH
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~ 197 (399)
++..+.|.||.|+||||+.|.++.
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 345699999999999999999986
No 262
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.47 E-value=0.0015 Score=58.22 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=30.7
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcC----CceEEEeccch
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGSEL 211 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~----~~~i~v~~s~l 211 (399)
.++..++|.|++|+||||+++.++..++ .+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4456799999999999999999998764 55777765443
No 263
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.47 E-value=0.0021 Score=58.37 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=27.5
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~~i 204 (399)
..+..+.|.|++|+|||++++.++..++.+++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 34556999999999999999999999987654
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.45 E-value=0.017 Score=54.36 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=27.6
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEec
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 208 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~ 208 (399)
++..++|.||+|+||||++..+|..+ |..+..+++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46679999999999999999999754 445555554
No 265
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.44 E-value=0.0018 Score=56.91 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.6
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.++..+.|.||+|+||||+++.++...
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345678999999999999999999875
No 266
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.41 E-value=0.0051 Score=58.49 Aligned_cols=32 Identities=31% Similarity=0.270 Sum_probs=27.0
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
.-++|.||+|+|||+|+..+|..++..++..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 35889999999999999999999887665554
No 267
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.41 E-value=0.0023 Score=56.23 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=23.0
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCc
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDAC 202 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~ 202 (399)
+.|+|.||+|+|||+|++.+..+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 458999999999999999998876433
No 268
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.39 E-value=0.012 Score=61.46 Aligned_cols=50 Identities=20% Similarity=0.141 Sum_probs=32.3
Q ss_pred cCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec
Q 015875 144 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 208 (399)
Q Consensus 144 ~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~ 208 (399)
.-.+.|++.+..++.. +.-.||+||||||||+++-.+...+ +..++.+..
T Consensus 189 ~LN~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp TCCHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 3467788888777642 1247999999999997554444322 455544443
No 269
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.39 E-value=0.0031 Score=62.49 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=26.3
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~~i 204 (399)
.+.-|+|.|+||+||||+|+.++..++..++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 3556899999999999999999998876543
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.38 E-value=0.0027 Score=56.42 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=24.1
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
.++..+.|.||+|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455789999999999999999998764
No 271
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.34 E-value=0.043 Score=48.51 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=33.8
Q ss_pred CccccccCcHHHHHHHHHHHhcCCCChhHHHhhC---CCCCCceeEeCCCCCcHHHHHHHHHH
Q 015875 138 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 138 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g---~~~~~~vLL~GppGtGKT~larala~ 197 (399)
.+|++++-.+...+.+.+.- ...+.-++... +...+.+++.+|+|+|||..+-..+-
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTT---CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence 46788876677777766531 11111111110 11235799999999999987665554
No 272
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.34 E-value=0.011 Score=61.20 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=25.2
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.++++..+.|.||+|+||||+++.++...
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 35677789999999999999999999854
No 273
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.33 E-value=0.002 Score=56.88 Aligned_cols=26 Identities=31% Similarity=0.591 Sum_probs=22.2
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+++.+.|.||+|+|||||++.++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45679999999999999999999865
No 274
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.33 E-value=0.0069 Score=53.44 Aligned_cols=36 Identities=17% Similarity=0.011 Sum_probs=27.8
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 208 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~ 208 (399)
.++..+.|.|++|+||||+++.++..+ +..++.++.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 345569999999999999999999865 555555543
No 275
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.32 E-value=0.022 Score=57.40 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=23.8
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+..+..+.|.||+|+||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3455679999999999999999999864
No 276
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.32 E-value=0.0023 Score=54.65 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=25.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.+...+.|.||.|+|||||+++++..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45566679999999999999999999976
No 277
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.30 E-value=0.0051 Score=54.26 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=40.5
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEecc--------chhhhhhchh-----HHHHHHHHHHHHcCCCEEE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS--------ELVQKYVGEG-----ARMVRELFQMARSKKACIV 238 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s--------~l~~~~~g~~-----~~~v~~~f~~a~~~~p~il 238 (399)
.+-.+++||.|+|||+.+-.+++++ +..++.+... .+.++ .|.. .....++++.+.. ...+|
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~-~g~~~~a~~~~~~~~i~~~~~~-~~dvV 85 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSH-MGEKEQAVAIKNSREILKYFEE-DTEVI 85 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECT-TSCEEECEEESSSTHHHHHCCT-TCSEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhh-cCCceeeEeeCCHHHHHHHHhc-cCCEE
Confidence 3468899999999999888888764 4444444210 11111 1100 0001244544432 35699
Q ss_pred EEecCCcc
Q 015875 239 FFDEVDAI 246 (399)
Q Consensus 239 ~iDEiD~l 246 (399)
+|||++.+
T Consensus 86 iIDEaqfl 93 (191)
T 1xx6_A 86 AIDEVQFF 93 (191)
T ss_dssp EECSGGGS
T ss_pred EEECCCCC
Confidence 99999987
No 278
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.30 E-value=0.0023 Score=57.49 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=23.8
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.++..+.|.||+|+|||||++.++...
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34566779999999999999999999876
No 279
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.30 E-value=0.016 Score=59.91 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=25.1
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.++++..+.|.||+|+|||||++.++...
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45677789999999999999999999853
No 280
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.29 E-value=0.013 Score=66.39 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=26.3
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
.++++..+.|.||+|+||||+++.+.+...
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 457778899999999999999999998653
No 281
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.29 E-value=0.0026 Score=55.32 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=25.6
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
.+.|.||+|+||||+++.++...+. .+.++..++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 244554443
No 282
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.28 E-value=0.0019 Score=60.56 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=23.8
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhc-CCceE
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRT-DACFI 204 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~-~~~~i 204 (399)
..++|.|+||+||||+++.++..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 468999999999999999999864 54433
No 283
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.24 E-value=0.0026 Score=55.41 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.0
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~ 200 (399)
+.+.|.||+|+||||+++.++....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998653
No 284
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.23 E-value=0.0022 Score=61.72 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=27.2
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEEEe
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIRVI 207 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~v~ 207 (399)
.-++|.||+|+|||++|+.+|..++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 36899999999999999999999986655544
No 285
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.21 E-value=0.016 Score=55.65 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=30.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 208 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~ 208 (399)
|+.+..-++|.|+||+|||++|..+|... +.++..++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 67788889999999999999999998753 566665543
No 286
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.20 E-value=0.0061 Score=63.38 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.3
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhc
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~ 199 (399)
+.++++|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 479999999999999988876543
No 287
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.20 E-value=0.0015 Score=66.50 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=44.2
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcC--CceEEEeccc-hhhh-----------hhchhHHHHHHHHHHHHcCCCEEEE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSE-LVQK-----------YVGEGARMVRELFQMARSKKACIVF 239 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~--~~~i~v~~s~-l~~~-----------~~g~~~~~v~~~f~~a~~~~p~il~ 239 (399)
.+.+++|.||+|+||||++++++.... ...+.+.... +... ..+.....+..++..+....|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 356799999999999999999998763 3455554332 2100 0011111223344455557899999
Q ss_pred EecCC
Q 015875 240 FDEVD 244 (399)
Q Consensus 240 iDEiD 244 (399)
++|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99974
No 288
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.15 E-value=0.0023 Score=56.70 Aligned_cols=27 Identities=33% Similarity=0.338 Sum_probs=24.0
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
++..+.|.||+|+||||+++.++..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445688999999999999999999876
No 289
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.15 E-value=0.016 Score=59.88 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=25.2
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.++++..+.|.||+|+|||||++.++...
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 35677789999999999999999999854
No 290
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.14 E-value=0.0047 Score=54.76 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=24.2
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
..++.+.|.||+|+|||+|++.++....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456799999999999999999998764
No 291
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.011 Score=61.26 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.2
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+...+-|.||+|+|||||.+.++...
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 445679999999999999999999754
No 292
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.13 E-value=0.003 Score=59.13 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=26.8
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccch
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 211 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l 211 (399)
+..|.|.|++|+||||+|+.++ .++.++ +++..+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~ 108 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHL 108 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHH
Confidence 4469999999999999999999 577655 444444
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.13 E-value=0.0033 Score=59.63 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=27.3
Q ss_pred hCCCCCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 170 LGIDPPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 170 ~g~~~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
+.+++...+.|.||+|+|||||++.|+..+.
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 3567788899999999999999999998763
No 294
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.11 E-value=0.0035 Score=55.70 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=26.7
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i 204 (399)
.|.|.|++|||||++++.+|++++.+|+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 5899999999999999999999999987
No 295
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.11 E-value=0.0028 Score=56.27 Aligned_cols=29 Identities=34% Similarity=0.438 Sum_probs=24.8
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i 204 (399)
+++++|.||+|+|||++|..++.+.. .++
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iI 62 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLI 62 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEE
Confidence 45799999999999999999998865 444
No 296
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.10 E-value=0.012 Score=60.78 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=25.4
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+++...+.|.||+|+|||||++.++...
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45677789999999999999999999854
No 297
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.08 E-value=0.0035 Score=55.56 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.1
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
+.++..+.|.||+|+|||||++.++....
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35566799999999999999999998764
No 298
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.06 E-value=0.025 Score=58.69 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=25.6
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+++...+.|.||+|+|||||++.++...
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 45777889999999999999999999854
No 299
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.03 E-value=0.025 Score=62.24 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=54.1
Q ss_pred CCceeEeCCCCCcHHHHHHHHHH-----hcCCce--------------EEEeccchhhhhhchhHH-HHHHHHHHHHcCC
Q 015875 175 PKGVLCYGPPGTGKTLLARAVAN-----RTDACF--------------IRVIGSELVQKYVGEGAR-MVRELFQMARSKK 234 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~-----~~~~~~--------------i~v~~s~l~~~~~g~~~~-~v~~~f~~a~~~~ 234 (399)
+..++|.||.|+||||+.|.++- ..+..+ .++...+........... +.+-..-.+....
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~ 868 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATA 868 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCT
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCC
Confidence 46799999999999999999942 123111 011111111100011111 1111222234567
Q ss_pred CEEEEEecCCcccCCccCCCCCCCh-HHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 235 ACIVFFDEVDAIGGARFDDGVGGDN-EVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 235 p~il~iDEiD~l~~~r~~~~~~~~~-~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
|++|+|||+.+-. +. +....+..+++.+.. ..+..+|++|+..+
T Consensus 869 ~sLlLLDEp~~Gt----------d~~dg~~~~~~il~~L~~---~~g~~vl~~TH~~e 913 (1022)
T 2o8b_B 869 HSLVLVDELGRGT----------ATFDGTAIANAVVKELAE---TIKCRTLFSTHYHS 913 (1022)
T ss_dssp TCEEEEECTTTTS----------CHHHHHHHHHHHHHHHHH---TSCCEEEEECCCHH
T ss_pred CcEEEEECCCCCC----------ChHHHHHHHHHHHHHHHh---cCCCEEEEEeCCHH
Confidence 8999999986532 33 233445666666531 22557888888643
No 300
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.99 E-value=0.012 Score=59.89 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=28.3
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcC---CceEEEeccch
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSEL 211 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~---~~~i~v~~s~l 211 (399)
+.-|+|.|.||+||||+|+.++..++ .....++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 44689999999999999999999874 34444554443
No 301
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.98 E-value=0.0029 Score=62.21 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=27.1
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceEEE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 206 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i~v 206 (399)
+.-++|.||+|+|||+|+..+|..++..++..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 34588999999999999999999988766554
No 302
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.96 E-value=0.013 Score=55.99 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=28.6
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 208 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~ 208 (399)
..++..++|.||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3456779999999999999999999854 455555544
No 303
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.92 E-value=0.018 Score=60.80 Aligned_cols=59 Identities=24% Similarity=0.233 Sum_probs=33.2
Q ss_pred CCccccccCcHHHHHHHHHH-HhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHH
Q 015875 137 DVTYNDVGGCKEQIEKMREV-VELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAV 195 (399)
Q Consensus 137 ~~~~~~i~G~~~~~~~l~~~-i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~laral 195 (399)
+.+|++++-.+...+.+.+. +..+.......-...+.....+++.||+|+|||+.+-..
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHH
Confidence 35677776555544444432 111111212112223455788999999999999998433
No 304
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.91 E-value=0.004 Score=56.83 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=25.2
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcCCc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTDAC 202 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~~~ 202 (399)
+.++.-+-|.||+|+||||+++.++..++..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3445568899999999999999999987643
No 305
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.90 E-value=0.0047 Score=55.64 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=24.0
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
.+++..+.|.||+|+|||||++.++....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45667799999999999999999998754
No 306
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.88 E-value=0.0025 Score=60.11 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.1
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
..+.-+.|.||+|+||||+++.++..++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455689999999999999999998764
No 307
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.88 E-value=0.034 Score=48.54 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=16.0
Q ss_pred CCceeEeCCCCCcHHHHHH
Q 015875 175 PKGVLCYGPPGTGKTLLAR 193 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~lar 193 (399)
.+.+++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3679999999999997544
No 308
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.85 E-value=0.0049 Score=58.37 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.3
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.++..+.|.||+|+||||+++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4556679999999999999999999864
No 309
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.84 E-value=0.075 Score=49.90 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=45.2
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchh-------hhh--------h----c-hhHHHHHHHHHHH
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV-------QKY--------V----G-EGARMVRELFQMA 230 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~-------~~~--------~----g-~~~~~v~~~f~~a 230 (399)
++..+.+.|++|+||||++..+|..+ +..+..+++.-.. ..+ . + ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45578888999999999999999854 4455544432100 000 0 0 1123335566666
Q ss_pred HcCCCEEEEEecCCcc
Q 015875 231 RSKKACIVFFDEVDAI 246 (399)
Q Consensus 231 ~~~~p~il~iDEiD~l 246 (399)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5456779999997554
No 310
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.83 E-value=0.015 Score=55.73 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.8
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.++..+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456679999999999999999999864
No 311
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.82 E-value=0.033 Score=52.84 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=32.6
Q ss_pred CccccccCcHHHHHHHHHHHhcCCCChhHHHhhC----CCCCCceeEeCCCCCcHHHHHHHHHH
Q 015875 138 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG----IDPPKGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 138 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g----~~~~~~vLL~GppGtGKT~larala~ 197 (399)
.+|++++-.+...+.|.+.-- ..+.-++... ....+.+++.+|+|+|||+.+-..+-
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~---~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGF---EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTC---CSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHcCC---CCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 457777666666666655321 1111111111 11236899999999999988655443
No 312
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.80 E-value=0.017 Score=57.39 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=27.7
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 208 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~ 208 (399)
++..++|.|++|+||||++..+|..+ +..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35689999999999999999999865 355555554
No 313
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.79 E-value=0.015 Score=59.06 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=44.1
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh----------h---------hh-chhHHHHHHHHHHH
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ----------K---------YV-GEGARMVRELFQMA 230 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~----------~---------~~-g~~~~~v~~~f~~a 230 (399)
.+..|+|.|+||+||||++..+|..+ +.....+++..... . .. ..........+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999755 55555555421100 0 00 11122334445555
Q ss_pred HcCCCEEEEEecCCcc
Q 015875 231 RSKKACIVFFDEVDAI 246 (399)
Q Consensus 231 ~~~~p~il~iDEiD~l 246 (399)
......++|||-...+
T Consensus 180 ~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 180 KNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHTTCCEEEEEECCCC
T ss_pred HHCCCcEEEEeCCCCc
Confidence 5455679999987655
No 314
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.78 E-value=0.023 Score=64.36 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=25.6
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+++...+-|.||+|+||||+++.+.+..
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 45778889999999999999999999854
No 315
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.75 E-value=0.033 Score=59.32 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=20.8
Q ss_pred CCceeEeCCCCCcHHHHHHHHHH
Q 015875 175 PKGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~ 197 (399)
...+.|.||.|+||||+.|.++.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 45689999999999999999986
No 316
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.72 E-value=0.041 Score=56.28 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=34.9
Q ss_pred HHHHHHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 225 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 225 ~~f~~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
-.+..+-...|.+|++||--.- -|...+..+.+++..+.. ..+..||++|...
T Consensus 394 v~iAraL~~~p~lLlLDEPT~g----------LD~~~~~~i~~~l~~l~~---~~g~tvi~vsHdl 446 (538)
T 3ozx_A 394 LYIAATLAKEADLYVLDQPSSY----------LDVEERYIVAKAIKRVTR---ERKAVTFIIDHDL 446 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHHH---HTTCEEEEECSCH
T ss_pred HHHHHHHHcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHH---hCCCEEEEEeCCH
Confidence 3444455578899999996543 367778888888877631 2244567777654
No 317
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.70 E-value=0.025 Score=57.84 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=32.2
Q ss_pred HHHcCCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCC
Q 015875 229 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 290 (399)
Q Consensus 229 ~a~~~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 290 (399)
.|-...|.+|++||--+- -+...+..+.+++..+.. +..||++|.+.
T Consensus 151 ~aL~~~p~illlDEPts~----------LD~~~~~~l~~~l~~l~~-----g~tii~vsHdl 197 (538)
T 3ozx_A 151 ASLLREADVYIFDQPSSY----------LDVRERMNMAKAIRELLK-----NKYVIVVDHDL 197 (538)
T ss_dssp HHHHSCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHCT-----TSEEEEECSCH
T ss_pred HHHHcCCCEEEEECCccc----------CCHHHHHHHHHHHHHHhC-----CCEEEEEEeCh
Confidence 344567889999996543 267778888888888742 34466666653
No 318
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.69 E-value=0.003 Score=56.94 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=18.1
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHH-Hhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVA-NRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala-~~~ 199 (399)
+.++.-+.|.||+|+||||+++.++ ...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3456679999999999999999999 764
No 319
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.68 E-value=0.0066 Score=55.13 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=27.7
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchh
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 212 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~ 212 (399)
.+-|.||||+||||+|+.+++.++.+++ +..+++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdll 43 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI--STGDML 43 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee--echHHH
Confidence 4778999999999999999999987765 444443
No 320
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.68 E-value=0.0059 Score=59.27 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.3
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.++..+.|.||+|+||||+++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3456679999999999999999999865
No 321
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.67 E-value=0.088 Score=46.20 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.1
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~ 199 (399)
...++|.|++|+|||+|+..+++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999853
No 322
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.67 E-value=0.015 Score=57.69 Aligned_cols=50 Identities=20% Similarity=0.376 Sum_probs=34.8
Q ss_pred CCccccccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 137 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 137 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
..++++++-.......++.++. .+...++|.||+|+||||++++++..+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~--------------~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIK--------------RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHT--------------SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHHHHH--------------hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4566666655555555555432 2334589999999999999999998764
No 323
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.64 E-value=0.0063 Score=63.26 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=32.1
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccch
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 211 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l 211 (399)
.+..|+|.|.||+||||+|+++++.+ +.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 34569999999999999999999998 889988875433
No 324
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.61 E-value=0.034 Score=58.76 Aligned_cols=20 Identities=40% Similarity=0.423 Sum_probs=17.6
Q ss_pred CCCCceeEeCCCCCcHHHHH
Q 015875 173 DPPKGVLCYGPPGTGKTLLA 192 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~la 192 (399)
.....+++.||+|+|||+.+
T Consensus 37 ~~~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 37 LEGKNALISIPTASGKTLIA 56 (720)
T ss_dssp GGTCEEEEECCGGGCHHHHH
T ss_pred cCCCcEEEEcCCccHHHHHH
Confidence 34678999999999999887
No 325
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.56 E-value=0.0073 Score=54.69 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=26.0
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcC--CceEE
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTD--ACFIR 205 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~--~~~i~ 205 (399)
.+.-+.|.||||+||||+++.+++.++ ..++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 445688999999999999999999886 34443
No 326
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.53 E-value=0.027 Score=55.96 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=48.0
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc----CCceEEEeccchhhhh----------h-------c---hhHHHHHHHHH
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKY----------V-------G---EGARMVRELFQ 228 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~----~~~~i~v~~s~l~~~~----------~-------g---~~~~~v~~~f~ 228 (399)
.+++.+++.|++|+||||++-.+|..+ |..+..+++....... . + .....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 346679999999999999999999754 6667767664321100 0 0 12333355666
Q ss_pred HHHcCCCEEEEEecCCcc
Q 015875 229 MARSKKACIVFFDEVDAI 246 (399)
Q Consensus 229 ~a~~~~p~il~iDEiD~l 246 (399)
.++.....+++||=...+
T Consensus 178 ~~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHTTCSEEEEECCCCC
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 666555679999875444
No 327
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.52 E-value=0.0029 Score=55.90 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.7
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~ 200 (399)
-+.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999874
No 328
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.51 E-value=0.0084 Score=52.33 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=27.8
Q ss_pred eeEeCCCCCcHHHHHHHHHHhcCCceEEEeccc
Q 015875 178 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 210 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~~~~~i~v~~s~ 210 (399)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 77877776544
No 329
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.51 E-value=0.022 Score=53.70 Aligned_cols=72 Identities=19% Similarity=0.084 Sum_probs=46.3
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh-------hh------------h-chhHHHHHHHHHHHH
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-------KY------------V-GEGARMVRELFQMAR 231 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~-------~~------------~-g~~~~~v~~~f~~a~ 231 (399)
+..+.+.|++|+|||+++..+|..+ +..+..+++.-... .+ . ......+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999999765 55565555431100 00 0 112333455666666
Q ss_pred cCCCEEEEEecCCcc
Q 015875 232 SKKACIVFFDEVDAI 246 (399)
Q Consensus 232 ~~~p~il~iDEiD~l 246 (399)
.....+++||=.-.+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 556679999986554
No 330
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.49 E-value=0.008 Score=54.32 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=27.0
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEE
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIR 205 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~ 205 (399)
..|.|.|++|||||++++.+|+.++.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 368999999999999999999999988753
No 331
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.45 E-value=0.0049 Score=56.15 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=24.7
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.+...+.|.||+|+|||||++.++...
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34566779999999999999999999754
No 332
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.45 E-value=0.012 Score=58.92 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.5
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~ 199 (399)
...++|+||+|+|||+|+..++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 4469999999999999999988643
No 333
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.44 E-value=0.028 Score=50.36 Aligned_cols=31 Identities=19% Similarity=-0.014 Sum_probs=23.0
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc---CCceEEEe
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT---DACFIRVI 207 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~---~~~~i~v~ 207 (399)
-.+++||.|+|||+.+-.++.+. +..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35689999999999888887754 55555543
No 334
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.42 E-value=0.031 Score=53.62 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=23.4
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.....+.|.||||+|||||.++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3455569999999999999999999754
No 335
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.40 E-value=0.14 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=18.4
Q ss_pred CceeEeCCCCCcHHHHHHHHHH
Q 015875 176 KGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~ 197 (399)
+.+++.+|+|+|||..+-..+-
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~ 41 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICE 41 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHH
Confidence 4799999999999988666654
No 336
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.38 E-value=0.0092 Score=51.70 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=22.0
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~ 198 (399)
..++||.|+||+|||++|.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 568999999999999999999875
No 337
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.37 E-value=0.0053 Score=55.96 Aligned_cols=29 Identities=28% Similarity=0.265 Sum_probs=24.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.+...+.|.||+|+|||||++.++...
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34667789999999999999999999853
No 338
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.27 E-value=0.0076 Score=56.67 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=25.4
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcC---CceEEEeccchh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELV 212 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~---~~~i~v~~s~l~ 212 (399)
.-|.|.||+|+||||+|+.+++.++ ..+..+++..+.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4589999999999999999998765 344556655543
No 339
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.24 E-value=0.088 Score=51.44 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=23.6
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.....++|.||+|+|||+|++.+++..
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3446679999999999999999998753
No 340
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.24 E-value=0.044 Score=49.94 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=21.0
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~ 198 (399)
+..|+|.|.||+|||+|+.++...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 346999999999999999999863
No 341
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.23 E-value=0.0098 Score=56.57 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=24.0
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
..++..+.|.||+|+|||||++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3455668999999999999999999865
No 342
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.21 E-value=0.0049 Score=55.69 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=23.9
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|+|||||++.++...
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556678999999999999999999754
No 343
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.18 E-value=0.022 Score=56.61 Aligned_cols=25 Identities=40% Similarity=0.373 Sum_probs=20.7
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~ 198 (399)
..+-.++.|+||||||++...++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3445889999999999999888753
No 344
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.18 E-value=0.035 Score=60.54 Aligned_cols=26 Identities=38% Similarity=0.595 Sum_probs=22.9
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHH
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~ 197 (399)
+.++..+.|.||+|+|||||++.++.
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45566799999999999999999994
No 345
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.17 E-value=0.0068 Score=56.14 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=24.2
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|+|||||++.++...
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566679999999999999999999854
No 346
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.16 E-value=0.3 Score=48.28 Aligned_cols=73 Identities=18% Similarity=0.108 Sum_probs=45.1
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccchhh-------hh----------hc---hhHHHHHHHHHHH
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-------KY----------VG---EGARMVRELFQMA 230 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l~~-------~~----------~g---~~~~~v~~~f~~a 230 (399)
++..+.+.|++|+||||++..+|..+ +..+..+++.-... .+ .+ .........+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999865 44555554421110 00 00 1123335566666
Q ss_pred HcCCCEEEEEecCCcc
Q 015875 231 RSKKACIVFFDEVDAI 246 (399)
Q Consensus 231 ~~~~p~il~iDEiD~l 246 (399)
+.....+++||=.-.+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5455679999865444
No 347
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.14 E-value=0.08 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.9
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~ 199 (399)
...|.|.|+||+|||+++..++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4469999999999999999998764
No 348
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.13 E-value=0.008 Score=54.94 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=24.1
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.+ ..+.|.||+|+|||||++.++...
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456 789999999999999999999854
No 349
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.09 E-value=0.1 Score=52.23 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=23.2
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~ 200 (399)
+..|+|.|.||+|||++++.+++.++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45699999999999999999999764
No 350
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.07 E-value=0.014 Score=50.55 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=22.0
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~ 199 (399)
...+.|.|++|+|||++++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999999864
No 351
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.07 E-value=0.0068 Score=54.43 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.1
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|+|||||++.++...
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556679999999999999999999854
No 352
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.05 E-value=0.0092 Score=55.41 Aligned_cols=28 Identities=32% Similarity=0.582 Sum_probs=24.4
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
.+.+...+.|.||+|+|||||++.++..
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456677999999999999999999985
No 353
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.04 E-value=0.013 Score=55.51 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=22.9
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~ 199 (399)
++..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45679999999999999999999864
No 354
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.02 E-value=0.0078 Score=55.65 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=24.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.++..+.|.||+|+|||||++.++...
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34667789999999999999999999754
No 355
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.02 E-value=0.0067 Score=55.45 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.7
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
+.+...+.|.||+|+|||||++.++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456667999999999999999999974
No 356
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.02 E-value=0.008 Score=55.75 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=24.8
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.+...+.|.||+|+|||||++.++...
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34566779999999999999999999854
No 357
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.00 E-value=0.083 Score=47.81 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=35.5
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhc---CCceEEEecc-------chhhhhhchh-----HHHHHHHHHHHHcCCCEEEEE
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS-------ELVQKYVGEG-----ARMVRELFQMARSKKACIVFF 240 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s-------~l~~~~~g~~-----~~~v~~~f~~a~~~~p~il~i 240 (399)
.-.+++||.|+|||+.+-..+.+. +..++.+... .+.++. |.. -....+++..+ ....+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 457889999999997666655532 4444443311 111110 000 00001234444 34569999
Q ss_pred ecCCcc
Q 015875 241 DEVDAI 246 (399)
Q Consensus 241 DEiD~l 246 (399)
||+.-+
T Consensus 97 DEaQF~ 102 (234)
T 2orv_A 97 DEGQFF 102 (234)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999987
No 358
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.98 E-value=0.0081 Score=55.91 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=24.8
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.+...+.|.||+|+|||||++.++...
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34667779999999999999999999854
No 359
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.98 E-value=0.0072 Score=55.76 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=33.7
Q ss_pred CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 015875 233 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 293 (399)
Q Consensus 233 ~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 293 (399)
..|.+|++||--+- -|...+..+.+++..+.. . +..||++|+..+.+
T Consensus 170 ~~p~lllLDEPts~----------LD~~~~~~l~~~l~~l~~---~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 170 TNPKMIVMDEPIAG----------VAPGLAHDIFNHVLELKA---K-GITFLIIEHRLDIV 216 (257)
T ss_dssp TCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHHH---T-TCEEEEECSCCSTT
T ss_pred cCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEecCHHHH
Confidence 56889999996543 377888888888887641 2 45678888776543
No 360
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.96 E-value=0.0084 Score=55.08 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.7
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
+.+...+.|.||+|+|||||++.++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456667999999999999999999984
No 361
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.94 E-value=0.12 Score=51.03 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=17.0
Q ss_pred CceeEeCCCCCcHHHHH-HHHH
Q 015875 176 KGVLCYGPPGTGKTLLA-RAVA 196 (399)
Q Consensus 176 ~~vLL~GppGtGKT~la-rala 196 (399)
+.+++.||+|+|||..+ -++.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999875 4444
No 362
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.93 E-value=0.19 Score=48.14 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=30.8
Q ss_pred ccccccCcHHHHHHHHHHHhcCCCChhHHHhhC---CCCCCceeEeCCCCCcHHHHHHHHH
Q 015875 139 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLARAVA 196 (399)
Q Consensus 139 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g---~~~~~~vLL~GppGtGKT~larala 196 (399)
+|+++.-.....+.|.+.- ...+--++... +...+.+++.+|+|+|||..+-..+
T Consensus 9 ~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 9 GFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CGGGGCCCHHHHHHHHHHS---CCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHH
Confidence 4666655566666665431 11111111111 1224679999999999998764444
No 363
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.93 E-value=0.0074 Score=54.66 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.4
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|+|||||++.++...
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566779999999999999999999854
No 364
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.03 Score=48.19 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=22.8
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.....|++.|++|+|||+|+.++....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344579999999999999999998753
No 365
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.91 E-value=0.011 Score=55.98 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=23.8
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
..+..+.|.||+|+||||+++.++..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445688999999999999999999765
No 366
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.90 E-value=0.0074 Score=55.36 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.2
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|+|||||++.++...
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566679999999999999999999854
No 367
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.90 E-value=0.013 Score=60.36 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=30.5
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcC----CceEEEeccch
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGSEL 211 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~----~~~i~v~~s~l 211 (399)
+..|+|.|+||+||||+|+++++.++ .+++.++...+
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 45689999999999999999999875 67777775443
No 368
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.90 E-value=0.031 Score=46.56 Aligned_cols=21 Identities=48% Similarity=0.751 Sum_probs=19.2
Q ss_pred ceeEeCCCCCcHHHHHHHHHH
Q 015875 177 GVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~ 197 (399)
.++|.|++|+|||+|++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999964
No 369
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.89 E-value=0.0075 Score=55.03 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=23.9
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|+|||||++.++...
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556679999999999999999999853
No 370
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.86 E-value=0.015 Score=55.59 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=23.3
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
.|.-+.|.||+|+||||+++.++..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344689999999999999999998764
No 371
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.86 E-value=0.0092 Score=55.35 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=33.6
Q ss_pred CCCEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCCCC
Q 015875 233 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 293 (399)
Q Consensus 233 ~~p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 293 (399)
..|.+|++||--+- -|......+.+++..+.. . +..||++|+.++.+
T Consensus 155 ~~p~lllLDEPts~----------LD~~~~~~l~~~l~~l~~---~-g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 155 HEPDILILDEPLVG----------LDREGKTDLLRIVEKWKT---L-GKTVILISHDIETV 201 (266)
T ss_dssp TCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHHH---T-TCEEEEECSCCTTT
T ss_pred cCCCEEEEcCcccc----------CCHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHH
Confidence 56889999997553 377888888888887631 2 44678888876543
No 372
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.85 E-value=0.094 Score=44.73 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.7
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
..|++.|++|+|||+|+..+.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999874
No 373
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.84 E-value=0.041 Score=62.08 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=25.5
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+++...+.|.||+|+|||||++.++...
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45677889999999999999999999865
No 374
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.84 E-value=0.067 Score=48.16 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=15.6
Q ss_pred CCceeEeCCCCCcHHHHH
Q 015875 175 PKGVLCYGPPGTGKTLLA 192 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~la 192 (399)
.+.+++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 467999999999999864
No 375
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.83 E-value=0.011 Score=57.61 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=24.0
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|||||||.+.++...
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4556678999999999999999999853
No 376
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.83 E-value=0.12 Score=44.33 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.7
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~ 198 (399)
....|++.|++|+|||+|+..+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999864
No 377
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.82 E-value=0.1 Score=49.92 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=31.8
Q ss_pred CccccccCcHHHHHHHHHHHh-cCCCCh-hHHHhhCCCCCCceeEeCCCCCcHHHHHHHH
Q 015875 138 VTYNDVGGCKEQIEKMREVVE-LPMLHP-EKFVKLGIDPPKGVLCYGPPGTGKTLLARAV 195 (399)
Q Consensus 138 ~~~~~i~G~~~~~~~l~~~i~-~~~~~~-~~~~~~g~~~~~~vLL~GppGtGKT~laral 195 (399)
.+|++++-.....+.+.+.-- .|.... +.+..+--..++.+++.+|+|+|||+.+-..
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHH
Confidence 456667666666666655211 111111 1111111123478999999999999865543
No 378
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.81 E-value=0.025 Score=57.96 Aligned_cols=40 Identities=33% Similarity=0.387 Sum_probs=30.6
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcC----CceEEEeccchh
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGSELV 212 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~----~~~i~v~~s~l~ 212 (399)
.++..+.|.|++|+||||++++|+..++ ..+..+++..+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 3455799999999999999999999874 244456665553
No 379
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.81 E-value=0.022 Score=60.08 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=17.9
Q ss_pred CCCceeEeCCCCCcHHHHHHH
Q 015875 174 PPKGVLCYGPPGTGKTLLARA 194 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~lara 194 (399)
..+.+++.||+|+|||+.+-.
T Consensus 39 ~~~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 39 SGKNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp TCSCEEEECSSHHHHHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHHH
Confidence 467899999999999998743
No 380
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.80 E-value=0.017 Score=49.66 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.7
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~ 200 (399)
-.+|+||.|+|||+++++|+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 678999999999999999998664
No 381
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.77 E-value=0.0086 Score=55.05 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.2
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|+|||||++.++...
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4566679999999999999999999854
No 382
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.76 E-value=0.085 Score=51.12 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=32.4
Q ss_pred CCccccccCcHHHHHHHHHHHhcCCCChhHHHhhC---CCCCCceeEeCCCCCcHHHHHHHH
Q 015875 137 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLARAV 195 (399)
Q Consensus 137 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~g---~~~~~~vLL~GppGtGKT~laral 195 (399)
..+|++++-.+...+.|.+.- +..|--++... +...+.+++.+|+|+|||..+-..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYG---FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH
Confidence 346777776666666665431 11111111110 112467999999999999765543
No 383
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.75 E-value=0.017 Score=52.29 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.2
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~ 200 (399)
|.-+.|.|++|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34689999999999999999999984
No 384
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.73 E-value=0.0081 Score=55.30 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.8
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
.+.-|.|.|++|+||||+++.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345689999999999999999999983
No 385
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.69 E-value=0.0096 Score=57.78 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=45.2
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcC--CceEEEecc-chhhh-------hhc-h-------hHHHHHHHHHHHHcC
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGS-ELVQK-------YVG-E-------GARMVRELFQMARSK 233 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~--~~~i~v~~s-~l~~~-------~~g-~-------~~~~v~~~f~~a~~~ 233 (399)
+.+...++|.||+|+||||++++++.... ...+.+... ++... ++. . ....++..+..+...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~ 251 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM 251 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc
Confidence 45667899999999999999999998653 234444421 11100 010 0 111244555555566
Q ss_pred CCEEEEEecCCc
Q 015875 234 KACIVFFDEVDA 245 (399)
Q Consensus 234 ~p~il~iDEiD~ 245 (399)
.|..++++|+..
T Consensus 252 ~pd~~l~~e~r~ 263 (361)
T 2gza_A 252 KPTRILLAELRG 263 (361)
T ss_dssp CCSEEEESCCCS
T ss_pred CCCEEEEcCchH
Confidence 788888888653
No 386
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.67 E-value=0.0093 Score=55.77 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=24.1
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|+|||||++.++...
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4556679999999999999999999854
No 387
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.67 E-value=0.0092 Score=54.95 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=24.1
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.++..+.|.||+|+|||||++.++...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566679999999999999999999854
No 388
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.63 E-value=0.012 Score=52.60 Aligned_cols=24 Identities=46% Similarity=0.558 Sum_probs=21.4
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~ 198 (399)
...+.|.||+|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999974
No 389
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.55 E-value=0.022 Score=49.11 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=21.5
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhc
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~ 199 (399)
..+.|.|++|+|||+++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999865
No 390
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.46 E-value=0.033 Score=57.98 Aligned_cols=37 Identities=30% Similarity=0.490 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 146 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 146 ~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
.+.+.+.+..++. ...++++||||||||+++..++..
T Consensus 182 n~~Q~~av~~~l~----------------~~~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ----------------RPLSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp CHHHHHHHHHHHT----------------CSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc----------------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 5666666666542 125899999999999987777654
No 391
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.46 E-value=0.24 Score=48.36 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=24.7
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc----CCceEEEec
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 208 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~----~~~~i~v~~ 208 (399)
++++.+|+|+|||..+-.++... +...+.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999988886653 555555544
No 392
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.39 E-value=0.014 Score=57.21 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=24.4
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
.+.+...+.|.||+|||||||++.|+..
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 3466778999999999999999999974
No 393
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.38 E-value=0.051 Score=55.93 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=20.1
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~ 198 (399)
.+.+++.+|+|+|||..+-.++..
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCceEEEecCCCChHHHHHHHHHH
Confidence 356899999999999998777764
No 394
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.38 E-value=0.017 Score=55.96 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.5
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDAC 202 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~ 202 (399)
...+.|.||+|+|||||++.++......
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5579999999999999999999987554
No 395
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.33 E-value=0.0099 Score=57.55 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=24.0
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|||||||.+.++...
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4566679999999999999999999843
No 396
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.28 E-value=0.35 Score=48.58 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=18.3
Q ss_pred CceeEeCCCCCcHHHHHHHHHH
Q 015875 176 KGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~ 197 (399)
+.+++.+|+|+|||..+-..+-
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~ 44 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICE 44 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHH
Confidence 4699999999999988766554
No 397
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.26 E-value=0.013 Score=55.17 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=24.7
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.+...+.|.||+|+|||||++.++...
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34566779999999999999999999854
No 398
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.23 E-value=0.037 Score=55.08 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=27.5
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhcCCceEEEecc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 209 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~~~~~i~v~~s 209 (399)
.+++.+|+|+|||..+-.++...+...+.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999988888877776666554
No 399
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.19 E-value=0.049 Score=48.83 Aligned_cols=30 Identities=23% Similarity=0.150 Sum_probs=25.9
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCceE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACFI 204 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~i 204 (399)
+.-+.|.|++|+||||+++.+++.++....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 456899999999999999999999876433
No 400
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.12 E-value=0.36 Score=42.09 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.2
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|+|.|++|+|||+|++.+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999863
No 401
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.09 E-value=0.017 Score=53.56 Aligned_cols=27 Identities=37% Similarity=0.646 Sum_probs=23.5
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+. ...+.|.||+|+|||||++.++...
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 5679999999999999999999764
No 402
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.08 E-value=0.028 Score=48.93 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.4
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.+.|.|++|+|||+|++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 403
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.024 Score=56.83 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=24.9
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.+.+...+.|.||+|+|||||+|.++...
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34566789999999999999999999853
No 404
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.03 E-value=0.088 Score=55.23 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=30.7
Q ss_pred CEEEEEecCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEecCCCC
Q 015875 235 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 291 (399)
Q Consensus 235 p~il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 291 (399)
|.+|++||--.- -+...+..+.+++..+.. . +..||++|...+
T Consensus 565 p~llllDEPt~~----------LD~~~~~~i~~~l~~l~~---~-g~tvi~vtHd~~ 607 (670)
T 3ux8_A 565 RTLYILDEPTTG----------LHVDDIARLLDVLHRLVD---N-GDTVLVIEHNLD 607 (670)
T ss_dssp CEEEEEESTTTT----------CCHHHHHHHHHHHHHHHH---T-TCEEEEECCCHH
T ss_pred CcEEEEeCCCCC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHH
Confidence 579999996543 367788888888887642 2 456788887653
No 405
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.01 E-value=0.023 Score=57.65 Aligned_cols=27 Identities=7% Similarity=-0.075 Sum_probs=24.2
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCC
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDA 201 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~ 201 (399)
+..++|.|.+||||||+++++|++++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999874
No 406
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.00 E-value=0.024 Score=52.70 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=20.7
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~ 199 (399)
.+.|.||+|+|||||.++++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
No 407
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.00 E-value=0.23 Score=44.43 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.8
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
..|+|.|++|+|||+|+.++...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 46999999999999999999874
No 408
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.98 E-value=0.028 Score=50.23 Aligned_cols=32 Identities=25% Similarity=0.154 Sum_probs=25.3
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc---CCceEEE
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRV 206 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~---~~~~i~v 206 (399)
+.-|.|.|++|+||||+++.+++.+ +.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 4468889999999999999999876 3444444
No 409
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.95 E-value=0.027 Score=48.82 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.8
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~ 199 (399)
.+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 410
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.94 E-value=0.25 Score=44.19 Aligned_cols=22 Identities=23% Similarity=0.060 Sum_probs=16.9
Q ss_pred CceeEeCCCCCcHHH-HHHHHHH
Q 015875 176 KGVLCYGPPGTGKTL-LARAVAN 197 (399)
Q Consensus 176 ~~vLL~GppGtGKT~-larala~ 197 (399)
.-.+++||-|+|||+ |.+.+.+
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r 51 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRR 51 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999 5566544
No 411
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.92 E-value=0.11 Score=49.63 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
.....+.|.|+||+|||+++..++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345568899999999999999998753
No 412
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.92 E-value=0.032 Score=49.29 Aligned_cols=45 Identities=31% Similarity=0.344 Sum_probs=32.1
Q ss_pred ccCcHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHhcC
Q 015875 143 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD 200 (399)
Q Consensus 143 i~G~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~~~ 200 (399)
+-+..+..+.++..... .....++|.|++|+|||+++..++..+.
T Consensus 11 l~~~~~~~~~~~~~~~~-------------~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 11 LAENKRLAEKNREALRE-------------SGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HhhcHHHHHHHHHhhcc-------------cCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44556666666655432 1234699999999999999999998753
No 413
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.90 E-value=0.016 Score=49.97 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=21.2
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~ 199 (399)
.+.|.|++|+|||||++.++..+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 414
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.90 E-value=0.11 Score=57.57 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=18.6
Q ss_pred CCceeEeCCCCCcHHHHHHHHHH
Q 015875 175 PKGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~ 197 (399)
.+.+|+.||+|+|||+.+-..+.
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHH
Confidence 45799999999999988755544
No 415
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.87 E-value=0.032 Score=50.81 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.5
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.-+.|.|++|+||||+++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999876
No 416
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.84 E-value=0.19 Score=56.73 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=23.9
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+++...+-|.||+|+|||||++.++...
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3556679999999999999999999743
No 417
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.83 E-value=0.042 Score=49.09 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=28.2
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhcCCceEEEeccchhhh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 214 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~~~~~i~v~~s~l~~~ 214 (399)
-.|-|+|..|||||++++.++. +|.+++ ++..+...
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vi--daD~ia~~ 45 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLV--DTDLIAHR 45 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEE--ECcHHHHH
Confidence 3688999999999999999998 787765 55444433
No 418
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.78 E-value=0.33 Score=43.95 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.1
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~ 198 (399)
...|+|.|++|+|||+|...+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999863
No 419
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.78 E-value=0.18 Score=46.17 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.4
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~ 198 (399)
...|+|.|++|+|||+|+.++...
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999874
No 420
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.78 E-value=0.13 Score=48.37 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.9
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~ 198 (399)
+.-|.|.|.||+|||+|..++...
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 345999999999999999999874
No 421
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.75 E-value=0.031 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=19.3
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.-|.|.|++|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568889999999999999999876
No 422
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.71 E-value=0.18 Score=50.13 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=32.9
Q ss_pred CCccccccCcHHHHHHHHHHHhcCCCChh-----HHHhhCCCCCCceeEeCCCCCcHHHHH-HHHHH
Q 015875 137 DVTYNDVGGCKEQIEKMREVVELPMLHPE-----KFVKLGIDPPKGVLCYGPPGTGKTLLA-RAVAN 197 (399)
Q Consensus 137 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~-----~~~~~g~~~~~~vLL~GppGtGKT~la-rala~ 197 (399)
..+|.++.-.+...+.|.+. ....|. .+..+-...++.+++.||+|+|||..+ -.+..
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~ 154 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLS 154 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHT
T ss_pred cCCHHHcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHH
Confidence 34667776666666666542 111111 111111123578999999999999874 34443
No 423
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.71 E-value=0.038 Score=45.67 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.1
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.+++.|++|+|||+|++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 424
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.69 E-value=0.054 Score=53.92 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=28.6
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhcCCc--eEEEecc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRTDAC--FIRVIGS 209 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~~~~--~i~v~~s 209 (399)
+.....+.|.||+|||||+|++.+++..... .+.+.+.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 3456679999999999999999999976543 3444443
No 425
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.68 E-value=0.11 Score=44.29 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.1
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~ 198 (399)
...+++.|++|+|||+|.+.+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
No 426
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.61 E-value=0.06 Score=57.72 Aligned_cols=37 Identities=30% Similarity=0.490 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHhcCCCChhHHHhhCCCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 146 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 146 ~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
.+.+.+.+..++. ...++++||||||||+++..++..
T Consensus 358 n~~Q~~Av~~~l~----------------~~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 358 NHSQVYAVKTVLQ----------------RPLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp CHHHHHHHHHHHT----------------SSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcc----------------CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 5666666665543 125899999999999987777654
No 427
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.58 E-value=0.095 Score=48.22 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.2
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|.|.|+||+|||+|..++...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 428
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=93.57 E-value=0.4 Score=50.03 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=18.7
Q ss_pred CceeEeCCCCCcHHHHHHHHHH
Q 015875 176 KGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~ 197 (399)
+.+++.+|+|+|||+.+-..+-
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 5799999999999998776654
No 429
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.56 E-value=0.041 Score=45.77 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=20.3
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.+++.|++|+|||+|++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 430
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.54 E-value=0.12 Score=52.99 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=29.2
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEeccch
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 211 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~s~l 211 (399)
+..++|.|++|+||||+++.++..+ +.++..++...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 4568999999999999999999876 345666665544
No 431
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.54 E-value=0.15 Score=53.42 Aligned_cols=21 Identities=43% Similarity=0.474 Sum_probs=18.1
Q ss_pred CCCCCceeEeCCCCCcHHHHH
Q 015875 172 IDPPKGVLCYGPPGTGKTLLA 192 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~la 192 (399)
+.+...+-|.||+|+|||||+
T Consensus 41 i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 41 IPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHh
Confidence 455667999999999999996
No 432
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.54 E-value=0.065 Score=50.82 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=20.6
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~ 199 (399)
-++|.|+.|+||||+++.+....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 57899999999999999999753
No 433
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.50 E-value=0.3 Score=43.22 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.6
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
..|+|.|++|+|||+|+..+...
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999864
No 434
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.46 E-value=0.044 Score=45.33 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|++.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 435
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.42 E-value=0.4 Score=40.90 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.9
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~ 199 (399)
.|+|.|++|+|||+|++.+....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998753
No 436
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.39 E-value=0.35 Score=51.64 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=24.2
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEec
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 208 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~~ 208 (399)
.+..+|+.||+|+|||..+-..+-.. +...+.+..
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34689999999999998876554332 545555543
No 437
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.38 E-value=0.15 Score=49.40 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.9
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|.|.|+||+|||+|.++++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3889999999999999999864
No 438
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.37 E-value=0.039 Score=54.62 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=22.3
Q ss_pred CCCCCc--eeEeCCCCCcHHHHHHHHHHh
Q 015875 172 IDPPKG--VLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 172 ~~~~~~--vLL~GppGtGKT~larala~~ 198 (399)
+.++.. +.|.||+|+|||||+++++..
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 445555 889999999999999999874
No 439
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.35 E-value=0.072 Score=47.14 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~ 199 (399)
...++|.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468889999999999999999865
No 440
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.34 E-value=0.045 Score=49.36 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.0
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCC
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDA 201 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~ 201 (399)
+.-|.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456888899999999999999987644
No 441
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.33 E-value=0.037 Score=47.49 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.6
Q ss_pred ceeEeCCCCCcHHHHHHHHHH
Q 015875 177 GVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~ 197 (399)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 442
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.32 E-value=0.041 Score=45.39 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.2
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.+++.|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 443
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.31 E-value=0.044 Score=46.04 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.7
Q ss_pred ceeEeCCCCCcHHHHHHHHHH
Q 015875 177 GVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~ 197 (399)
.+.|.|++|+|||+|.+.++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999986
No 444
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.30 E-value=0.056 Score=52.10 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.5
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHHhcCCc
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVANRTDAC 202 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~~~~~~ 202 (399)
.....+.|.||+|+|||+|++.+++.....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 445679999999999999999999987543
No 445
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.29 E-value=0.048 Score=45.35 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=20.1
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|++.|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 446
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.28 E-value=0.048 Score=45.15 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.7
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
..|++.|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999874
No 447
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.24 E-value=0.029 Score=50.44 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~ 198 (399)
++..+.|.|+.|+||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3456889999999999999999987
No 448
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.24 E-value=0.41 Score=50.01 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=22.8
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhcCCceEEEec
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 208 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~~~~~i~v~~ 208 (399)
..+.+++.||+|+|||+.+-...-+.+...+.+..
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~P 265 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNP 265 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEES
T ss_pred cCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcc
Confidence 34569999999999997655444333444444443
No 449
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.23 E-value=0.054 Score=45.63 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.4
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHH
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~ 197 (399)
....|++.|++|+|||+|++.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345799999999999999999986
No 450
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.23 E-value=0.05 Score=45.28 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.4
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|++.|++|+|||+|++.+.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 451
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.22 E-value=0.045 Score=45.87 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=20.7
Q ss_pred CceeEeCCCCCcHHHHHHHHHHhc
Q 015875 176 KGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~~ 199 (399)
.-.+|+||.|+|||++..|++-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998644
No 452
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.20 E-value=0.021 Score=49.93 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=23.0
Q ss_pred CCCCCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 171 GIDPPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 171 g~~~~~~vLL~GppGtGKT~larala~~ 198 (399)
.+.+...+.|.|++|+|||+|.++++..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3445556999999999999999998753
No 453
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.16 E-value=0.052 Score=45.69 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.2
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|++.|++|+|||+|++.+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 454
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.15 E-value=0.052 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.7
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
-.|++.|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 455
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.09 E-value=0.051 Score=45.57 Aligned_cols=22 Identities=45% Similarity=0.661 Sum_probs=20.0
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|+|.|++|+|||+|++.+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5999999999999999999863
No 456
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.08 E-value=0.054 Score=45.66 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.7
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
..|++.|++|+|||+|++.+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 457
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.06 E-value=0.23 Score=49.38 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.6
Q ss_pred ceeEeCCCCCcHHHHHHHHHH
Q 015875 177 GVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~ 197 (399)
.|+|.|.||+|||+|...+..
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEE
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 599999999999999999976
No 458
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.05 E-value=0.05 Score=51.64 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=22.0
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~ 198 (399)
..+++|.|++|+|||++|.++..+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 568999999999999999999875
No 459
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.03 E-value=0.05 Score=45.32 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.7
Q ss_pred ceeEeCCCCCcHHHHHHHHHH
Q 015875 177 GVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~ 197 (399)
.|++.|++|+|||+|++++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 460
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.02 E-value=0.098 Score=50.92 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=26.8
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHhc---CCceEEEe
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVI 207 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~~---~~~~i~v~ 207 (399)
...++++.||+|+|||++++.++... +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45689999999999999999998753 55555554
No 461
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.98 E-value=0.058 Score=45.02 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.2
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~ 198 (399)
...|++.|++|+|||+|+..+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 446999999999999999999863
No 462
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.98 E-value=0.056 Score=48.32 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.1
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.-|.|.|++|+||||+++.+++.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999876
No 463
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.98 E-value=0.049 Score=46.46 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.3
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.+.|.|++|+|||+|++.++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999873
No 464
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.93 E-value=0.051 Score=45.26 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|++.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 465
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.92 E-value=0.058 Score=44.80 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=19.8
Q ss_pred ceeEeCCCCCcHHHHHHHHHH
Q 015875 177 GVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~ 197 (399)
.|++.|++|+|||+|+.++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 599999999999999999986
No 466
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.91 E-value=0.059 Score=44.70 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.1
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.+++.|++|+|||+|++++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 467
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.084 Score=56.60 Aligned_cols=21 Identities=43% Similarity=0.673 Sum_probs=17.4
Q ss_pred ceeEeCCCCCcHHHHHHHHHH
Q 015875 177 GVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~ 197 (399)
.+++.||||||||+++..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999988766654
No 468
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.85 E-value=0.061 Score=44.62 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.8
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.+++.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 469
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.85 E-value=0.054 Score=47.01 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=21.2
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~ 198 (399)
...|+|.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 446999999999999999999863
No 470
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.81 E-value=0.062 Score=45.25 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
-.|++.|++|+|||+|++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36999999999999999999863
No 471
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.80 E-value=0.061 Score=45.82 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.7
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
..|+|.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999873
No 472
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=92.77 E-value=0.63 Score=45.99 Aligned_cols=20 Identities=25% Similarity=0.125 Sum_probs=17.0
Q ss_pred CCCCceeEeCCCCCcHHHHH
Q 015875 173 DPPKGVLCYGPPGTGKTLLA 192 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~la 192 (399)
...+.+++.||+|+|||+.+
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRF 25 (440)
T ss_dssp STTCEEEECCCTTSSTTTTH
T ss_pred hCCCCEEEEcCCCCCHHHHH
Confidence 34678999999999999874
No 473
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.74 E-value=0.06 Score=44.87 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.1
Q ss_pred ceeEeCCCCCcHHHHHHHHHH
Q 015875 177 GVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~ 197 (399)
.|++.|++|+|||+|++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999974
No 474
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.67 E-value=0.55 Score=44.99 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.8
Q ss_pred CCCceeEeCCCCCcHHHHHHHHHHh
Q 015875 174 PPKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~larala~~ 198 (399)
.+..+.+.|+||+|||+|...++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999864
No 475
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.66 E-value=0.18 Score=46.19 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=20.0
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|.|.|+||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999864
No 476
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.66 E-value=0.066 Score=45.46 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.3
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|++.|++|+|||+|+.++.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 477
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.63 E-value=0.067 Score=44.92 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.8
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
..|++.|++|+|||+|++.+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999874
No 478
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.57 E-value=0.21 Score=46.18 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=20.1
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|.|.|+||+|||+|..++...
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999863
No 479
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.57 E-value=0.21 Score=45.77 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=19.7
Q ss_pred ceeEeCCCCCcHHHHHHHHHH
Q 015875 177 GVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~ 197 (399)
.|+|.|+||+|||+|..++..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 589999999999999999986
No 480
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.54 E-value=0.049 Score=46.27 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.8
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
..+.|.|+||+|||+|.+.++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999874
No 481
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.53 E-value=0.069 Score=45.66 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.4
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|++.|++|+|||+|+..++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 482
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.52 E-value=0.07 Score=45.69 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.3
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~ 198 (399)
.-.|++.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999875
No 483
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.52 E-value=0.067 Score=46.18 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.3
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHh
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~ 198 (399)
...|+|.|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999874
No 484
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.52 E-value=0.062 Score=45.15 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.1
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|++.|++|+|||+|+..+...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 485
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.52 E-value=0.067 Score=46.24 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.5
Q ss_pred CCCCceeEeCCCCCcHHHHHHHHHH
Q 015875 173 DPPKGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 173 ~~~~~vLL~GppGtGKT~larala~ 197 (399)
.....|++.|++|+|||+|+..+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999974
No 486
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.51 E-value=0.07 Score=45.82 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.4
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|+|.|++|+|||+|++.+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
No 487
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.49 E-value=0.073 Score=44.93 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.6
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
..|++.|++|+|||+|++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 488
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.49 E-value=0.071 Score=45.10 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.7
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
..|+|.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 36999999999999999999863
No 489
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.44 E-value=0.072 Score=45.53 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred ceeEeCCCCCcHHHHHHHHHHhc
Q 015875 177 GVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~~ 199 (399)
.|+|.|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 59999999999999999888754
No 490
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.44 E-value=0.065 Score=45.08 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.4
Q ss_pred ceeEeCCCCCcHHHHHHHHHHh
Q 015875 177 GVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 177 ~vLL~GppGtGKT~larala~~ 198 (399)
.|++.|++|+|||+|++++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999874
No 491
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.40 E-value=0.065 Score=45.78 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.7
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
..|++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 492
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.38 E-value=0.049 Score=51.63 Aligned_cols=28 Identities=36% Similarity=0.485 Sum_probs=22.9
Q ss_pred CCceeEeCCCCCcHHHHHHHHHHhcCCce
Q 015875 175 PKGVLCYGPPGTGKTLLARAVANRTDACF 203 (399)
Q Consensus 175 ~~~vLL~GppGtGKT~larala~~~~~~~ 203 (399)
..++||.|+||+|||++|..+..+ |..+
T Consensus 147 g~gvli~G~sG~GKStlal~l~~~-G~~l 174 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLINK-NHLF 174 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCEE
Confidence 568999999999999999998763 4443
No 493
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=92.37 E-value=1 Score=48.00 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=18.9
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
+.+++.+|+|+|||..+-..+-.
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~ 286 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEH 286 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 47999999999999887666543
No 494
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.36 E-value=0.024 Score=51.31 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=20.0
Q ss_pred eeEeCCCCCcHHHHHHHHHHhc
Q 015875 178 VLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 178 vLL~GppGtGKT~larala~~~ 199 (399)
+.|.||+|+|||+++++|+..+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5688999999999999999865
No 495
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.33 E-value=0.064 Score=53.99 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=23.6
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+ ..+.|.||+|+|||||+++++...
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 455 678999999999999999999864
No 496
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.31 E-value=0.16 Score=44.84 Aligned_cols=59 Identities=19% Similarity=0.122 Sum_probs=34.1
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCCCChhHHHhh---CCCCCCceeEeCCCCCcHHHH-HHHHHH
Q 015875 136 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKL---GIDPPKGVLCYGPPGTGKTLL-ARAVAN 197 (399)
Q Consensus 136 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~---g~~~~~~vLL~GppGtGKT~l-arala~ 197 (399)
+..+|++++-.+...+.+.+.- ...+.-++.. .+...+.+++.+|+|+|||.. +-.+..
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~ 74 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 74 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHH
Confidence 3456888876676666666542 1111111111 012246799999999999987 334444
No 497
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.29 E-value=0.071 Score=44.85 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.0
Q ss_pred CceeEeCCCCCcHHHHHHHHHH
Q 015875 176 KGVLCYGPPGTGKTLLARAVAN 197 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~ 197 (399)
-.|++.|++|+|||+|++++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999975
No 498
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.27 E-value=0.78 Score=46.47 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=15.5
Q ss_pred CCCceeEeCCCCCcHHHH
Q 015875 174 PPKGVLCYGPPGTGKTLL 191 (399)
Q Consensus 174 ~~~~vLL~GppGtGKT~l 191 (399)
..+.+++.+|+|+|||..
T Consensus 110 ~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCCeEEEECCCCCCccHH
Confidence 356899999999999985
No 499
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.25 E-value=0.079 Score=54.14 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCCCCceeEeCCCCCcHHHHHHHHHHhc
Q 015875 172 IDPPKGVLCYGPPGTGKTLLARAVANRT 199 (399)
Q Consensus 172 ~~~~~~vLL~GppGtGKT~larala~~~ 199 (399)
+.+...+.|.||+|+|||||++.++...
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456679999999999999999999743
No 500
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.23 E-value=0.08 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.7
Q ss_pred CceeEeCCCCCcHHHHHHHHHHh
Q 015875 176 KGVLCYGPPGTGKTLLARAVANR 198 (399)
Q Consensus 176 ~~vLL~GppGtGKT~larala~~ 198 (399)
-.|+|.|++|+|||+|++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
Done!