BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015876
         (399 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PKV|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla)
 pdb|3PKW|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla) Bound To
           Mn(Ii)
 pdb|3PKX|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla) Bound To
           Mn(Ii) And Toxoflavin
          Length = 252

 Score = 31.6 bits (70), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 259 FRMAPKIKIFQWRKGSQWFQMDRNLATEVVSDTTYFPLFQKYCKGSCYADE 309
           + +A  I    +++G  W      L TE   D  YFP F  Y   SCY ++
Sbjct: 82  YHIAINIAANHFQEGKAWLSGFGELLTENDEDQAYFPFFNAY---SCYVED 129


>pdb|3OUL|A Chain A, Crystal Structure Of Toxoflavin-Degrading Enzyme In A
           Substrate-Free Form
 pdb|3OUM|A Chain A, Crystal Structure Of Toxoflavin-Degrading Enzyme In
           Complex With Toxoflavin
          Length = 232

 Score = 31.6 bits (70), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 259 FRMAPKIKIFQWRKGSQWFQMDRNLATEVVSDTTYFPLFQKYCKGSCYADE 309
           + +A  I    +++G  W      L TE   D  YFP F  Y   SCY ++
Sbjct: 59  YHIAINIAANHFQEGKAWLSGFGELLTENDEDQAYFPFFNAY---SCYVED 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,846,333
Number of Sequences: 62578
Number of extensions: 432756
Number of successful extensions: 786
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 5
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)