Query 015876
Match_columns 399
No_of_seqs 257 out of 759
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 01:43:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 2.5E-46 5.5E-51 381.0 24.8 246 125-395 76-363 (421)
2 PF02485 Branch: Core-2/I-Bran 100.0 9.3E-48 2E-52 365.8 9.4 224 129-358 1-244 (244)
3 KOG0799 Branching enzyme [Carb 99.9 3.3E-27 7.2E-32 243.4 13.1 218 128-349 104-350 (439)
4 cd06439 CESA_like_1 CESA_like_ 48.2 1.4E+02 0.0031 27.4 9.4 102 121-235 23-131 (251)
5 TIGR03469 HonB hopene-associat 44.5 2.6E+02 0.0056 28.4 11.3 116 124-244 37-167 (384)
6 COG3771 Predicted membrane pro 39.3 17 0.00038 29.9 1.4 24 26-51 39-62 (97)
7 PF06305 DUF1049: Protein of u 35.3 7 0.00015 29.7 -1.4 19 32-50 22-40 (68)
8 PF12664 DUF3789: Protein of u 31.3 30 0.00066 23.5 1.3 20 31-50 2-21 (34)
9 PF06796 NapE: Periplasmic nit 29.7 1.6E+02 0.0034 22.4 5.0 10 1-10 1-10 (56)
10 COG4744 Uncharacterized conser 28.6 61 0.0013 28.0 3.0 30 26-55 23-52 (121)
11 PRK14583 hmsR N-glycosyltransf 27.0 1.7E+02 0.0037 30.4 6.7 91 125-226 73-170 (444)
12 PF09919 DUF2149: Uncharacteri 26.2 72 0.0016 26.4 3.0 29 27-55 3-31 (92)
13 cd06421 CESA_CelA_like CESA_Ce 25.7 2E+02 0.0043 25.9 6.3 99 127-235 1-106 (234)
14 TIGR03472 HpnI hopanoid biosyn 22.7 6.1E+02 0.013 25.5 9.8 110 126-245 40-161 (373)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=2.5e-46 Score=381.02 Aligned_cols=246 Identities=20% Similarity=0.271 Sum_probs=188.5
Q ss_pred CCCcEEEEEEec-CC-cchHHHHHHhhcccCCceEEEEEeCCCCCCCCCC-------------CCCCcceeeeeC-Ccce
Q 015876 125 RVPKVAFLFLTR-GP-VLLAPLWEKFFKGHEGFYSIYVHSSPSFNQSDAE-------------PEGSVFYGRRIP-SREV 188 (399)
Q Consensus 125 ~~~KIAfLiLa~-~~-~~l~~Lwe~lf~~~~~~~sIYIHvD~k~~~~~~~-------------~~~~vF~~r~Ip-s~~V 188 (399)
.+||+||||+++ |+ .+++||+++++ ++++.||||+|+|++..+.. ..++||+ +. +..|
T Consensus 76 ~~~r~AYLI~~h~~d~~~l~RLL~aLY---hprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~v---l~k~~~V 149 (421)
T PLN03183 76 KLPRFAYLVSGSKGDLEKLWRTLRALY---HPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYM---ITKANLV 149 (421)
T ss_pred CCCeEEEEEEecCCcHHHHHHHHHHhc---CCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEE---Eecceee
Confidence 579999999994 66 78999999995 45677999999999764310 2456765 44 3579
Q ss_pred eeCCccHHHHHHHHHHHHHhC-CCCCEEEEecCCCcccCChHHH-HHHH-hcCCCCcEEeecCCCCcccccccc------
Q 015876 189 KWGGVNMIEAERRLLANALLD-FSNERFVLLSESCIPLFNFSVI-YSHL-MNSTQNFVEVYDLEGPVGRGRYSF------ 259 (399)
Q Consensus 189 ~WG~~SlVeAel~LL~~AL~d-~~~~~fvLLSgsdiPL~s~~~I-~~~L-~~~~~sFI~~~~~~~~~~r~Ry~~------ 259 (399)
.|||+|||+||+++|+.+|+. .+|+|||||||+||||+++++| +.|+ .+.++|||++....+.....|+.+
T Consensus 150 ~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pg 229 (421)
T PLN03183 150 TYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPG 229 (421)
T ss_pred ccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCc
Confidence 999999999999999999985 6899999999999999999995 5666 467899999876433222222211
Q ss_pred -------cc---Cc--ccC-ccccccccceEEecHhHHHHhhhccch-hHHHHhhhcCccccCCchHhHHhhcc--CCCC
Q 015876 260 -------RM---AP--KIK-IFQWRKGSQWFQMDRNLATEVVSDTTY-FPLFQKYCKGSCYADEHYLPTFVNMK--FGAK 323 (399)
Q Consensus 260 -------~m---~P--~i~-~~~~rkGSQWf~LtR~~a~~Il~d~~~-~~~F~~~c~~~~~pDE~yf~TlL~~~--~~~~ 323 (399)
.+ .+ .+| ..++++|||||+|||++|+||+...+- -...+.+.+.+++|||+||||+++|+ +.++
T Consensus 230 l~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t 309 (421)
T PLN03183 230 LYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKT 309 (421)
T ss_pred eeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhccccccc
Confidence 00 00 112 246889999999999999999963321 12233333446789999999999997 4678
Q ss_pred ccCCceEEEEcCCCC-CCCccccCCCCcHHHHHHHhcCCccccCCCCCCCCceEeecCCCCchhHHHHhchhh
Q 015876 324 NANRTLTWVDWSHGG-PHPTRFVRSSITVQFLQKLRSGSRCEYNGKRTNICHLFARKFLPNTLDRLLRYAPTV 395 (399)
Q Consensus 324 i~n~~lryidWs~gg-~hP~~~~~~D~~~~~l~~lr~~~~C~yng~~~~~~~LFARKF~~~~~~~Ll~~~~~~ 395 (399)
+.|.++|||||.+++ .||++|+.+|+ ++|.++ .++|||||+. ++++|+.+|+-
T Consensus 310 ~vn~nLRyI~W~~~~~~~P~~l~~~D~-----~~l~~S------------~~lFARKFd~--d~~vl~~Id~~ 363 (421)
T PLN03183 310 AVNHDLHYISWDNPPKQHPHTLSLNDT-----EKMIAS------------GAAFARKFRR--DDPVLDKIDKE 363 (421)
T ss_pred ccCCceeEEecCCCCCCCCcccCHHHH-----HHHHhC------------CCccccCCCC--ChHHHHHHHHH
Confidence 899999999999764 59999999997 677763 5699999997 47888888853
No 2
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=9.3e-48 Score=365.80 Aligned_cols=224 Identities=31% Similarity=0.529 Sum_probs=151.3
Q ss_pred EEEEEEe-c-CCcchHHHHHHhhcccCCceEEEEEeCCCCCCCCCC-------CCCCcceeeeeC-CcceeeCCccHHHH
Q 015876 129 VAFLFLT-R-GPVLLAPLWEKFFKGHEGFYSIYVHSSPSFNQSDAE-------PEGSVFYGRRIP-SREVKWGGVNMIEA 198 (399)
Q Consensus 129 IAfLiLa-~-~~~~l~~Lwe~lf~~~~~~~sIYIHvD~k~~~~~~~-------~~~~vF~~r~Ip-s~~V~WG~~SlVeA 198 (399)
|||||+| + ++.++++|++.+. ++.+.+|||+|+|++..... ..++|++ ++ +++|.||++|||+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~---~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~---v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY---HPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHF---VPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH-----TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE----SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc---CCCCEEEEEEcCCCChHHHHHHHHhcccCCceee---cccccccccCCccHHHH
Confidence 7999999 6 4456777777773 45667899999997543211 3455654 77 78999999999999
Q ss_pred HHHHHHHHHh-CCCCCEEEEecCCCcccCChHHHHHHHhcC--CCCcEEeecCCCCccccccccc----cCcccCccccc
Q 015876 199 ERRLLANALL-DFSNERFVLLSESCIPLFNFSVIYSHLMNS--TQNFVEVYDLEGPVGRGRYSFR----MAPKIKIFQWR 271 (399)
Q Consensus 199 el~LL~~AL~-d~~~~~fvLLSgsdiPL~s~~~I~~~L~~~--~~sFI~~~~~~~~~~r~Ry~~~----m~P~i~~~~~r 271 (399)
|++||+.|++ +++|+|||||||+|+||+++++|+++|... +.+|+++...++....+||.+. +.+.++..+++
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 154 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLY 154 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--E
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccccccccc
Confidence 9999999999 789999999999999999999999999755 5789999887654444677653 33444445899
Q ss_pred cccceEEecHhHHHHhhhccchhHHHHhhhcCccccCCchHhHHhhcc--CCCCccCCceEEEEcC-CCCCCCccccCCC
Q 015876 272 KGSQWFQMDRNLATEVVSDTTYFPLFQKYCKGSCYADEHYLPTFVNMK--FGAKNANRTLTWVDWS-HGGPHPTRFVRSS 348 (399)
Q Consensus 272 kGSQWf~LtR~~a~~Il~d~~~~~~F~~~c~~~~~pDE~yf~TlL~~~--~~~~i~n~~lryidWs-~gg~hP~~~~~~D 348 (399)
+|||||+|+|++|++|+.|....+.|+.+|+.+++|||+||||+|+|. +...+.++++|||||+ ++++||++++..+
T Consensus 155 ~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i~W~~~~~~~p~~~~~~~ 234 (244)
T PF02485_consen 155 KGSQWFSLTRDFVEYILDDPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTIVNRNLRYIDWSRRGGCHPKTLTICD 234 (244)
T ss_dssp EE-S--EEEHHHHHHHHH-HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE-BTGT-SS---SSEEEE
T ss_pred ccceeeEeeHHHHHHhhhhHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccccCCCEEEEECCCCCCCCCCeeeeee
Confidence 999999999999999999899989999999899999999999999998 4678899999999999 8889999999999
Q ss_pred CcHHHHHHHh
Q 015876 349 ITVQFLQKLR 358 (399)
Q Consensus 349 ~~~~~l~~lr 358 (399)
++.+.|+.|+
T Consensus 235 ~~~~d~~~~~ 244 (244)
T PF02485_consen 235 LGPEDLPWLK 244 (244)
T ss_dssp --GGGHHHH-
T ss_pred eCHHHHHhhC
Confidence 9888777763
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3.3e-27 Score=243.45 Aligned_cols=218 Identities=19% Similarity=0.205 Sum_probs=161.6
Q ss_pred cEEEEEEe-cCCcchHHHHHHhhcccCCceEEEEEeCCCCCCCCCC---CCCCcceeeee-C-CcceeeCCccHHHHHHH
Q 015876 128 KVAFLFLT-RGPVLLAPLWEKFFKGHEGFYSIYVHSSPSFNQSDAE---PEGSVFYGRRI-P-SREVKWGGVNMIEAERR 201 (399)
Q Consensus 128 KIAfLiLa-~~~~~l~~Lwe~lf~~~~~~~sIYIHvD~k~~~~~~~---~~~~vF~~r~I-p-s~~V~WG~~SlVeAel~ 201 (399)
-+||+.++ ++-.++++++.+.+++ .+.++||+|.+++..+.. +..++|.|.+| + +..|.|||.|++.|.++
T Consensus 104 ~~a~~~~v~kd~~~verll~aiYhP---qN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l~a~l~ 180 (439)
T KOG0799|consen 104 PAAFLRVVYKDYEQVERLLQAIYHP---QNVYCIHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSILAAHLN 180 (439)
T ss_pred ceEEEEeecccHHHHHHHHHHHhCC---cCcceEEECCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhhHHHHH
Confidence 35555556 5557899999999764 345789999999876531 23344444334 3 56899999999999999
Q ss_pred HHHHHHhCC-CCCEEEEecCCCcccCChHHHHHHHhc-CCCCcEEeecCCCCccccc-ccc------------ccCcccC
Q 015876 202 LLANALLDF-SNERFVLLSESCIPLFNFSVIYSHLMN-STQNFVEVYDLEGPVGRGR-YSF------------RMAPKIK 266 (399)
Q Consensus 202 LL~~AL~d~-~~~~fvLLSgsdiPL~s~~~I~~~L~~-~~~sFI~~~~~~~~~~r~R-y~~------------~m~P~i~ 266 (399)
||+.+++.. +|+||++|||+|+||+++.|+.+.|.. +|.+||+.....+.....+ +.. .+.+.+|
T Consensus 181 c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~~~lp 260 (439)
T KOG0799|consen 181 CLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPWVILP 260 (439)
T ss_pred HHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCccccCC
Confidence 999999964 699999999999999999999999964 8899999876554221111 100 0111122
Q ss_pred -ccccccccceEEecHhHHHHhhhccchhHHHHhhhcCccccCCchHhHHhhccCCCCccCCc--eEEEEcCCC-----C
Q 015876 267 -IFQWRKGSQWFQMDRNLATEVVSDTTYFPLFQKYCKGSCYADEHYLPTFVNMKFGAKNANRT--LTWVDWSHG-----G 338 (399)
Q Consensus 267 -~~~~rkGSQWf~LtR~~a~~Il~d~~~~~~F~~~c~~~~~pDE~yf~TlL~~~~~~~i~n~~--lryidWs~g-----g 338 (399)
...+++||.|++|+|++|+|++.+... ..+.++.++++.|||+||+|+++|.++..-.+.+ +|++.|..+ +
T Consensus 261 ~~~ki~~Gs~~~~LsR~fv~y~i~~~~~-~~ll~~~~~t~~~dE~f~~Tl~~n~~~~~g~~~~~~lr~~~W~~~~~~~~~ 339 (439)
T KOG0799|consen 261 TALKLFKGSAWVSLSRAFVEYLISGNLP-RTLLMYYNNTYSPDEGFFHTLQCNPFGMPGVFNDECLRYTNWDRKDVDPPK 339 (439)
T ss_pred CceEEEecceeEEEeHHHHHHHhcCccH-HHHHHHHhCccCcchhhhHhhhccccCCCCcccchhhcceecccccccccc
Confidence 245789999999999999999998554 5777777889999999999999998433334445 999999862 4
Q ss_pred CCCccccCCCC
Q 015876 339 PHPTRFVRSSI 349 (399)
Q Consensus 339 ~hP~~~~~~D~ 349 (399)
.||+.++..|.
T Consensus 340 ~~c~~~~~~~~ 350 (439)
T KOG0799|consen 340 QHCHSLTVRDF 350 (439)
T ss_pred cCCcccccccc
Confidence 56777766654
No 4
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=48.23 E-value=1.4e+02 Score=27.41 Aligned_cols=102 Identities=15% Similarity=0.048 Sum_probs=59.5
Q ss_pred CCCCCCCcEEEEEEecCC-cchHHHHHHhhcccCCc--eEEEEEeCCCCCCCCCC----CCCCcceeeeeCCcceeeCCc
Q 015876 121 YPFKRVPKVAFLFLTRGP-VLLAPLWEKFFKGHEGF--YSIYVHSSPSFNQSDAE----PEGSVFYGRRIPSREVKWGGV 193 (399)
Q Consensus 121 ~p~~~~~KIAfLiLa~~~-~~l~~Lwe~lf~~~~~~--~sIYIHvD~k~~~~~~~----~~~~vF~~r~Ips~~V~WG~~ 193 (399)
.+-+..|+++.+|.++|. ..+.+.++.+.+..... +.|+|..|.+.+..... ...++.+ +.. . ...
T Consensus 23 ~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~---i~~--~--~~~ 95 (251)
T cd06439 23 PDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKL---LRF--P--ERR 95 (251)
T ss_pred CCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEE---EEc--C--CCC
Confidence 334568899999999555 56788888887643333 78888888765432200 1111222 211 1 122
Q ss_pred cHHHHHHHHHHHHHhCCCCCEEEEecCCCcccCChHHHHHHH
Q 015876 194 NMIEAERRLLANALLDFSNERFVLLSESCIPLFNFSVIYSHL 235 (399)
Q Consensus 194 SlVeAel~LL~~AL~d~~~~~fvLLSgsdiPL~s~~~I~~~L 235 (399)
+...|-..+++.| ..||++++-+.|+|- .+.+.+.+
T Consensus 96 g~~~a~n~gi~~a----~~d~i~~lD~D~~~~--~~~l~~l~ 131 (251)
T cd06439 96 GKAAALNRALALA----TGEIVVFTDANALLD--PDALRLLV 131 (251)
T ss_pred ChHHHHHHHHHHc----CCCEEEEEccccCcC--HHHHHHHH
Confidence 3455544555443 349999999999985 44444444
No 5
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=44.52 E-value=2.6e+02 Score=28.44 Aligned_cols=116 Identities=9% Similarity=0.052 Sum_probs=63.3
Q ss_pred CCCCcEEEEEEecCC-cchHHHHHHhhcccCC-ceEEEEEeCCCCCCCCC--C----CC---CCcceeeeeC--Ccceee
Q 015876 124 KRVPKVAFLFLTRGP-VLLAPLWEKFFKGHEG-FYSIYVHSSPSFNQSDA--E----PE---GSVFYGRRIP--SREVKW 190 (399)
Q Consensus 124 ~~~~KIAfLiLa~~~-~~l~~Lwe~lf~~~~~-~~sIYIHvD~k~~~~~~--~----~~---~~vF~~r~Ip--s~~V~W 190 (399)
...|++..+|-++|+ ..+.++++.+.+.+.. .+.|+|=-|.+.+.+.. + .. ..+-. +. ..+..|
T Consensus 37 ~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~v---i~~~~~~~g~ 113 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTV---VSGQPLPPGW 113 (384)
T ss_pred CCCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEE---ecCCCCCCCC
Confidence 356789999999555 5689999999875443 46666644444332210 0 00 12221 22 123455
Q ss_pred CCccHHHHHHHHHHHHHhC-CCCCEEEEecCCCcccCCh-HHHHHHHhcCCCCcEE
Q 015876 191 GGVNMIEAERRLLANALLD-FSNERFVLLSESCIPLFNF-SVIYSHLMNSTQNFVE 244 (399)
Q Consensus 191 G~~SlVeAel~LL~~AL~d-~~~~~fvLLSgsdiPL~s~-~~I~~~L~~~~~sFI~ 244 (399)
++ ...|--.+++.|-.. .+.|+++++-..|.+-.+. ..+.+.+...+...+.
T Consensus 114 ~G--k~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs 167 (384)
T TIGR03469 114 SG--KLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVS 167 (384)
T ss_pred cc--hHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEE
Confidence 54 446666677776543 2367887777777653222 3444444444545554
No 6
>COG3771 Predicted membrane protein [Function unknown]
Probab=39.26 E-value=17 Score=29.90 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=17.1
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhhhcc
Q 015876 26 LHIFNLLSFFIFFGCGLIFGIVLSFS 51 (399)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (399)
.++..++.. +|+.|+++|-+++..
T Consensus 39 f~LSTLla~--lF~~G~~lgwli~g~ 62 (97)
T COG3771 39 FRLSTLLAT--LFAAGFALGWLICGL 62 (97)
T ss_pred hhHHHHHHH--HHHHHHHHHHHHHHH
Confidence 455555544 489999999887764
No 7
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.32 E-value=7 Score=29.67 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhhhhhhhhc
Q 015876 32 LSFFIFFGCGLIFGIVLSF 50 (399)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~ 50 (399)
+.+++.|++|+++|...+.
T Consensus 22 l~il~~f~~G~llg~l~~~ 40 (68)
T PF06305_consen 22 LLILIAFLLGALLGWLLSL 40 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455567889999887655
No 8
>PF12664 DUF3789: Protein of unknown function (DUF3789); InterPro: IPR024522 This family of functionally uncharacterised bacterial proteins are approximately 40 amino acids in length. They contain two completely conserved residues (V and C) that may be functionally important.
Probab=31.34 E-value=30 Score=23.51 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhhhhhhhhc
Q 015876 31 LLSFFIFFGCGLIFGIVLSF 50 (399)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~ 50 (399)
.+.+++.|++|-.+|+++.-
T Consensus 2 ~~~~~l~~~~G~~~GVvlMC 21 (34)
T PF12664_consen 2 MLKDILGFSLGGMIGVVLMC 21 (34)
T ss_pred cHHHHHHHHccchHhHHHHH
Confidence 45677889999999998764
No 9
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=29.66 E-value=1.6e+02 Score=22.37 Aligned_cols=10 Identities=30% Similarity=0.478 Sum_probs=5.7
Q ss_pred CCcccccccc
Q 015876 1 MKSQNQNQNQ 10 (399)
Q Consensus 1 ~~~~~~~~~~ 10 (399)
|+++++++++
T Consensus 1 Ms~~~~~~~~ 10 (56)
T PF06796_consen 1 MSSQPKSESD 10 (56)
T ss_pred CCCCCCCccc
Confidence 6666655544
No 10
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=28.59 E-value=61 Score=27.97 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=22.1
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhhhcccCcc
Q 015876 26 LHIFNLLSFFIFFGCGLIFGIVLSFSLKDF 55 (399)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (399)
.+.+|++=..++|+.+++|-|.+|.+++.+
T Consensus 23 tGvANLfDaamVfsva~LI~lv~Sy~lp~~ 52 (121)
T COG4744 23 TGVANLFDAAMVFSVALLIALVMSYHLPEL 52 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 344555556777899999999988887655
No 11
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=26.96 E-value=1.7e+02 Score=30.40 Aligned_cols=91 Identities=10% Similarity=-0.038 Sum_probs=54.0
Q ss_pred CCCcEEEEEEecCC-cchHHHHHHhhcccCCceEEEEEeCCCCCCCCC------CCCCCcceeeeeCCcceeeCCccHHH
Q 015876 125 RVPKVAFLFLTRGP-VLLAPLWEKFFKGHEGFYSIYVHSSPSFNQSDA------EPEGSVFYGRRIPSREVKWGGVNMIE 197 (399)
Q Consensus 125 ~~~KIAfLiLa~~~-~~l~~Lwe~lf~~~~~~~sIYIHvD~k~~~~~~------~~~~~vF~~r~Ips~~V~WG~~SlVe 197 (399)
..|+++.+|-++|+ ..+.+.++.+.+.+...+.|+|=-|.+.+.... ....++-. +.. -..++ .-
T Consensus 73 ~~p~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~v---v~~--~~n~G--ka- 144 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRV---IHL--AHNQG--KA- 144 (444)
T ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEE---EEe--CCCCC--HH-
Confidence 45789999999555 568888899887666678888766655433210 01111211 110 01222 22
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCCcccC
Q 015876 198 AERRLLANALLDFSNERFVLLSESCIPLF 226 (399)
Q Consensus 198 Ael~LL~~AL~d~~~~~fvLLSgsdiPL~ 226 (399)
..+..++...+.|+++.+-..|+|=.
T Consensus 145 ---~AlN~gl~~a~~d~iv~lDAD~~~~~ 170 (444)
T PRK14583 145 ---IALRMGAAAARSEYLVCIDGDALLDK 170 (444)
T ss_pred ---HHHHHHHHhCCCCEEEEECCCCCcCH
Confidence 33444555467899999999998743
No 12
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=26.17 E-value=72 Score=26.43 Aligned_cols=29 Identities=24% Similarity=0.701 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhcccCcc
Q 015876 27 HIFNLLSFFIFFGCGLIFGIVLSFSLKDF 55 (399)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (399)
+..|++=..|+|++|+.+-++.+.++..+
T Consensus 3 gvvNL~Dv~LVfav~llvalv~~~n~~~~ 31 (92)
T PF09919_consen 3 GVVNLFDVMLVFAVGLLVALVMSWNMQEV 31 (92)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 46777778889999999999999888764
No 13
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=25.69 E-value=2e+02 Score=25.91 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=52.4
Q ss_pred CcEEEEEEecCC--cchHHHHHHhhcccCCc--eEEEEEeCCCCCCCCCC---CCCCcceeeeeCCcceeeCCccHHHHH
Q 015876 127 PKVAFLFLTRGP--VLLAPLWEKFFKGHEGF--YSIYVHSSPSFNQSDAE---PEGSVFYGRRIPSREVKWGGVNMIEAE 199 (399)
Q Consensus 127 ~KIAfLiLa~~~--~~l~~Lwe~lf~~~~~~--~sIYIHvD~k~~~~~~~---~~~~vF~~r~Ips~~V~WG~~SlVeAe 199 (399)
|+|..+|-+++. .-+++.++.+.+..... +.|+| +|-.+++.... ....-. ...+-.....+|+-. .+
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiiv-vdd~s~d~t~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~- 75 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYV-LDDGRRPELRALAAELGVEY-GYRYLTRPDNRHAKA--GN- 75 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEE-EcCCCchhHHHHHHHhhccc-CceEEEeCCCCCCcH--HH-
Confidence 578888888664 34788888888655444 77887 45444332110 001000 000111233455422 11
Q ss_pred HHHHHHHHhCCCCCEEEEecCCCcccCChHHHHHHH
Q 015876 200 RRLLANALLDFSNERFVLLSESCIPLFNFSVIYSHL 235 (399)
Q Consensus 200 l~LL~~AL~d~~~~~fvLLSgsdiPL~s~~~I~~~L 235 (399)
+..|++....+|++++...|++- .+.+.+.+
T Consensus 76 ---~n~~~~~a~~d~i~~lD~D~~~~--~~~l~~l~ 106 (234)
T cd06421 76 ---LNNALAHTTGDFVAILDADHVPT--PDFLRRTL 106 (234)
T ss_pred ---HHHHHHhCCCCEEEEEccccCcC--ccHHHHHH
Confidence 23334434679999999888883 34555544
No 14
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=22.75 E-value=6.1e+02 Score=25.51 Aligned_cols=110 Identities=9% Similarity=0.004 Sum_probs=58.1
Q ss_pred CCcEEEEEEecCC-cchHHHHHHhhcccCCceEEEEEeCCCCCCCCCC-------CCCCcceeeee-CCcceeeCCccHH
Q 015876 126 VPKVAFLFLTRGP-VLLAPLWEKFFKGHEGFYSIYVHSSPSFNQSDAE-------PEGSVFYGRRI-PSREVKWGGVNMI 196 (399)
Q Consensus 126 ~~KIAfLiLa~~~-~~l~~Lwe~lf~~~~~~~sIYIHvD~k~~~~~~~-------~~~~vF~~r~I-ps~~V~WG~~SlV 196 (399)
.|+|..++-++|. ..+++.++.+.+.++..+.|.| +|.++++.... ..+.+-. +.+ ...+..|++ -+
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIiv-vdd~s~D~t~~iv~~~~~~~p~~~i-~~v~~~~~~G~~~--K~ 115 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLF-GVQDPDDPALAVVRRLRADFPDADI-DLVIDARRHGPNR--KV 115 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEE-EeCCCCCcHHHHHHHHHHhCCCCce-EEEECCCCCCCCh--HH
Confidence 5678988888555 5688999999886666788877 55444332100 1111111 112 122233322 22
Q ss_pred HHHHHHHHHHHhCCCCCEEEEecCCCcccCChHHHHHHH---hcCCCCcEEe
Q 015876 197 EAERRLLANALLDFSNERFVLLSESCIPLFNFSVIYSHL---MNSTQNFVEV 245 (399)
Q Consensus 197 eAel~LL~~AL~d~~~~~fvLLSgsdiPL~s~~~I~~~L---~~~~~sFI~~ 245 (399)
.+..+ +++....|+++.+-..|.| +.+.+.+-. .+.+...|.+
T Consensus 116 ~~l~~----~~~~a~ge~i~~~DaD~~~--~p~~L~~lv~~~~~~~v~~V~~ 161 (373)
T TIGR03472 116 SNLIN----MLPHARHDILVIADSDISV--GPDYLRQVVAPLADPDVGLVTC 161 (373)
T ss_pred HHHHH----HHHhccCCEEEEECCCCCc--ChhHHHHHHHHhcCCCcceEec
Confidence 33223 3343467888877766666 455454443 3344455544
Done!