Query 015876
Match_columns 399
No_of_seqs 257 out of 759
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 3E-53 1E-57 430.3 13.2 273 101-396 49-381 (391)
2 2fy7_A Beta-1,4-galactosyltran 59.1 1.2E+02 0.004 28.4 12.5 105 100-228 35-146 (287)
3 1qg8_A Protein (spore coat pol 19.4 2E+02 0.0067 25.0 6.3 111 127-244 1-123 (255)
4 3ckj_A Putative uncharacterize 13.1 6.1E+02 0.021 23.3 8.4 113 125-245 46-168 (329)
5 3bcv_A Putative glycosyltransf 12.1 4.7E+02 0.016 22.1 6.8 106 125-242 3-116 (240)
6 2z86_A Chondroitin synthase; G 12.0 5.4E+02 0.018 25.9 8.1 90 125-226 373-469 (625)
7 3iz6_N 40S ribosomal protein S 9.7 3E+02 0.01 19.7 3.6 44 339-398 9-52 (56)
8 4fix_A UDP-galactofuranosyl tr 8.7 6.9E+02 0.023 26.1 7.6 104 124-236 177-294 (657)
9 1iio_A Conserved hypothetical 7.9 1.1E+02 0.0036 24.0 0.6 20 217-236 60-79 (84)
10 3lqv_P Splicing factor 3B subu 7.8 1.5E+02 0.0051 19.9 1.2 9 101-109 21-29 (39)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=3e-53 Score=430.32 Aligned_cols=273 Identities=15% Similarity=0.146 Sum_probs=212.0
Q ss_pred CCCChHHHHhHhhcCCCCC------CCCCC---CCCcEEEEEEecCC-cchHHHHHHhhcccCCceEEEEEeCCCCCCCC
Q 015876 101 HDMEDAELLWRASVVPKIP------EYPFK---RVPKVAFLFLTRGP-VLLAPLWEKFFKGHEGFYSIYVHSSPSFNQSD 170 (399)
Q Consensus 101 ~~~~d~el~~~a~~~~~~~------~~p~~---~~~KIAfLiLa~~~-~~l~~Lwe~lf~~~~~~~sIYIHvD~k~~~~~ 170 (399)
-.++|++++.....|+.+. ..|.+ ..+||||||+++++ .++++|++.+ .++.+.||||+|+|++..+
T Consensus 49 ~~~~~~~~~~~~~~C~~~~~~~~~~~~pl~~~e~~~kiAflil~h~d~~~l~rll~~l---y~p~n~y~IHvD~ks~~~~ 125 (391)
T 2gak_A 49 PRWTPHDYINMTRDCASFIRTRKYIVEPLTKEEVGFPIAYSIVVHHKIEMLDRLLRAI---YMPQNFYCIHVDRKAEESF 125 (391)
T ss_dssp CCCCHHHHHHHTTSHHHHHHHHTCCCSCSCHHHHTSCEEEEEEECSCHHHHHHHHHHH---CCTTSEEEEEECTTSCHHH
T ss_pred cccCcchhccccCCchhhhhcccccCCCCCccccCCCEEEEEEecCCHHHHHHHHHHH---hCCCCeEEEEEeCCCCHHH
Confidence 4678899888876677532 23432 46899999999655 4456555555 3466889999999987542
Q ss_pred CC---CCCCcceeeee--CCcceeeCCccHHHHHHHHHHHHHhCC-CCCEEEEecCCCcccCChHHHHHHHh-cCCCCcE
Q 015876 171 AE---PEGSVFYGRRI--PSREVKWGGVNMIEAERRLLANALLDF-SNERFVLLSESCIPLFNFSVIYSHLM-NSTQNFV 243 (399)
Q Consensus 171 ~~---~~~~vF~~r~I--ps~~V~WG~~SlVeAel~LL~~AL~d~-~~~~fvLLSgsdiPL~s~~~I~~~L~-~~~~sFI 243 (399)
.. ...++|.+++| ++..|.||++|||+||++||+.||++. +|+|||||||+|+||+++++|++||+ ++++|||
T Consensus 126 ~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFI 205 (391)
T 2gak_A 126 LAAVQGIASCFDNVFVASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNL 205 (391)
T ss_dssp HHHHHHHHHTCTTEEECSSCCCCCTTSHHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBC
T ss_pred HHHHHHHHhcCCCEEEeccCcccccCCchHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCcee
Confidence 10 01233444444 378999999999999999999999864 99999999999999999999999996 4799999
Q ss_pred EeecCCCC-cccccccc--------------ccCcccCccccccccceEEecHhHHHHhhhccchhHHHHhhhcCccccC
Q 015876 244 EVYDLEGP-VGRGRYSF--------------RMAPKIKIFQWRKGSQWFQMDRNLATEVVSDTTYFPLFQKYCKGSCYAD 308 (399)
Q Consensus 244 ~~~~~~~~-~~r~Ry~~--------------~m~P~i~~~~~rkGSQWf~LtR~~a~~Il~d~~~~~~F~~~c~~~~~pD 308 (399)
++.++++. ..|.+|.+ ++.|. ..+|++|||||+|+|++|++|++|.. .++|.++|+++|+||
T Consensus 206 e~~~~~~~~~~R~~~~~~~~~~~l~~~~~~k~~~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k~t~~pD 282 (391)
T 2gak_A 206 ETEKMPPNKEERWKKRYAVVDGKLTNTGIVKAPPPL--KTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQDTYSPD 282 (391)
T ss_dssp CBEECCGGGSHHHHEEEEEETTEEEEEEEECCCCSC--SSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHTTSSSGG
T ss_pred eccCCCcccccceEeeeeccccceeeecccccCCcc--ccceecccceeEecHHHHHHHHhCCc-HHHHHHHHcCCcCCc
Confidence 99987653 23333321 12332 35799999999999999999999865 678999999999999
Q ss_pred CchHhHHhhccC-CCC----------ccCCceEEEEcC-------CCCCCCc----------cccCCCCcHHHHHHHhcC
Q 015876 309 EHYLPTFVNMKF-GAK----------NANRTLTWVDWS-------HGGPHPT----------RFVRSSITVQFLQKLRSG 360 (399)
Q Consensus 309 E~yf~TlL~~~~-~~~----------i~n~~lryidWs-------~gg~hP~----------~~~~~D~~~~~l~~lr~~ 360 (399)
||||||++.+.+ ++. ..|+++|||+|+ +|++||. +|+.+|+ +.|++
T Consensus 283 E~ffqTll~~~~~pg~~~~~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl-----~~l~~- 356 (391)
T 2gak_A 283 EFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDL-----SWMLR- 356 (391)
T ss_dssp GTHHHHHTTSTTSTTCCCSSGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGH-----HHHTT-
T ss_pred hhHHHHHhhccCCCCccccccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHH-----HHHHh-
Confidence 999999999863 332 247899999997 4566887 7888886 67776
Q ss_pred CccccCCCCCCCCceEeecCCCCchhHHHHhchhhc
Q 015876 361 SRCEYNGKRTNICHLFARKFLPNTLDRLLRYAPTVL 396 (399)
Q Consensus 361 ~~C~yng~~~~~~~LFARKF~~~~~~~Ll~~~~~~~ 396 (399)
.++||||||++++++++++.+++.+
T Consensus 357 -----------s~~lFARKF~~~~d~~~l~~l~~~l 381 (391)
T 2gak_A 357 -----------QHHLFANKFDMDVDPFAIQCLDEHL 381 (391)
T ss_dssp -----------SCCSEEECCCTTTCHHHHHHHHHHH
T ss_pred -----------CCCceEEccCCccCHHHHHHHHHHH
Confidence 3789999999999999999998764
No 2
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=59.08 E-value=1.2e+02 Score=28.43 Aligned_cols=105 Identities=17% Similarity=0.063 Sum_probs=63.1
Q ss_pred CCCCChHHHHhHhhcC-CCCCCCC-C-CCCCcEEEEEEe-cCCcchHHHHHHhh---cccCCceEEEEEeCCCCCCCCCC
Q 015876 100 THDMEDAELLWRASVV-PKIPEYP-F-KRVPKVAFLFLT-RGPVLLAPLWEKFF---KGHEGFYSIYVHSSPSFNQSDAE 172 (399)
Q Consensus 100 ~~~~~d~el~~~a~~~-~~~~~~p-~-~~~~KIAfLiLa-~~~~~l~~Lwe~lf---~~~~~~~sIYIHvD~k~~~~~~~ 172 (399)
..+++-||+....... +-..-.| . ...++|+.+|-+ +....|.+.++.+. +.....+.|+|--| +.+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~gg~~~p~~c~~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdd-s~d~---- 109 (287)
T 2fy7_A 35 NMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQ-AGDT---- 109 (287)
T ss_dssp CSCCCHHHHHHHCTTCBTTTEECCSSSBCSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-CSSS----
T ss_pred cCCCCHHHHHhhCCCcccCCcCcCCCCCcCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEe-CCCC----
Confidence 3467888887653322 1111123 2 246799999999 44567888888887 33445677764323 1110
Q ss_pred CCCCcceeeeeCCcceeeCCccHHHHHHHHHHHHHhCCCCCEEEEecCCCcccCCh
Q 015876 173 PEGSVFYGRRIPSREVKWGGVNMIEAERRLLANALLDFSNERFVLLSESCIPLFNF 228 (399)
Q Consensus 173 ~~~~vF~~r~Ips~~V~WG~~SlVeAel~LL~~AL~d~~~~~fvLLSgsdiPL~s~ 228 (399)
+++...|.-..+..|++....+|++++-+.|+|....
T Consensus 110 -------------------~f~~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 110 -------------------IFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp -------------------CCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred -------------------ccchhhhhhhHHHHHHHhCCCCEEEEECCCcccCCCc
Confidence 1122233333454566666789999999999998774
No 3
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=19.36 E-value=2e+02 Score=24.97 Aligned_cols=111 Identities=10% Similarity=0.105 Sum_probs=62.4
Q ss_pred CcEEEEEEe-cCCcchHHHHHHhhcccCCceEEEEEeCCCCCCCC-----CCCCCCcceeeeeCCc----ceeeCCccHH
Q 015876 127 PKVAFLFLT-RGPVLLAPLWEKFFKGHEGFYSIYVHSSPSFNQSD-----AEPEGSVFYGRRIPSR----EVKWGGVNMI 196 (399)
Q Consensus 127 ~KIAfLiLa-~~~~~l~~Lwe~lf~~~~~~~sIYIHvD~k~~~~~-----~~~~~~vF~~r~Ips~----~V~WG~~SlV 196 (399)
|+|..+|.+ +....+.+.++.+.+.....+.|.|=-|.+.+.+. +....++-+ +... ...+...+..
T Consensus 1 p~vSViIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~---i~~~~~~~~~~~~n~G~~ 77 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRF---YQSDISGVKERTEKTRYA 77 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEE---EECCCCSHHHHHSSCHHH
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEE---EecccccccccccccCHH
Confidence 689999999 55677899999998755556777775554432211 001112211 1110 0011244555
Q ss_pred HHHHHHHHHHHhCCCCCEEEEecCCCcccCC-hHHHHHHHhc-CCCCcEE
Q 015876 197 EAERRLLANALLDFSNERFVLLSESCIPLFN-FSVIYSHLMN-STQNFVE 244 (399)
Q Consensus 197 eAel~LL~~AL~d~~~~~fvLLSgsdiPL~s-~~~I~~~L~~-~~~sFI~ 244 (399)
.|--.+++.| ..+|+++|-..|++--+ .+.+.+.+.. .+...+.
T Consensus 78 ~a~N~gi~~a----~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~ 123 (255)
T 1qg8_A 78 ALINQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIY 123 (255)
T ss_dssp HHHHHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHc----CCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEE
Confidence 6655565554 56899999888887443 2344455543 3444443
No 4
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=13.14 E-value=6.1e+02 Score=23.29 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=61.0
Q ss_pred CCCcEEEEEEe-cCCcchHHHHHHhhcccCC-ceEEEEEeCCCCCCCCCC---C-CCCccee-eeeCCcceeeCCccHHH
Q 015876 125 RVPKVAFLFLT-RGPVLLAPLWEKFFKGHEG-FYSIYVHSSPSFNQSDAE---P-EGSVFYG-RRIPSREVKWGGVNMIE 197 (399)
Q Consensus 125 ~~~KIAfLiLa-~~~~~l~~Lwe~lf~~~~~-~~sIYIHvD~k~~~~~~~---~-~~~vF~~-r~Ips~~V~WG~~SlVe 197 (399)
..|+|..+|-+ +....+.+.++.+.+.... .+.|+| +|-.+++.... . ...+... +.+.... ...+...
T Consensus 46 ~~~~vSViIp~yN~~~~l~~~l~sl~~q~~~~~~eiiv-VDdgS~D~t~~~~~~~~~~~~~~~~~~~~~~---~n~G~~~ 121 (329)
T 3ckj_A 46 AGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIV-LDSGSTDDTEIRAVAAGARVVSREQALPEVP---IRPGKGE 121 (329)
T ss_dssp TTCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEE-EECSCCSSHHHHHHHTTCEEEEHHHHCTTSC---CCCSHHH
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHhhCCCCcEEEE-EeCCCCchHHHHHHHhhhhhccceeeeccCC---CCCCHHH
Confidence 45789999999 5556789999999764433 467777 45444332110 0 1111000 0011011 2233456
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCCcccC--ChHHHHHHHh-cCCCCcEEe
Q 015876 198 AERRLLANALLDFSNERFVLLSESCIPLF--NFSVIYSHLM-NSTQNFVEV 245 (399)
Q Consensus 198 Ael~LL~~AL~d~~~~~fvLLSgsdiPL~--s~~~I~~~L~-~~~~sFI~~ 245 (399)
|-..+++.| ..+|+++|-..|+.+. -...+.+.|. +.+...|..
T Consensus 122 a~n~g~~~a----~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g 168 (329)
T 3ckj_A 122 ALWRSLAAS----RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKS 168 (329)
T ss_dssp HHHHHHHHC----CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEE
T ss_pred HHHHHHHhC----CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEE
Confidence 665666554 4588888888887332 2456666653 445555543
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=12.13 E-value=4.7e+02 Score=22.08 Aligned_cols=106 Identities=12% Similarity=0.027 Sum_probs=59.3
Q ss_pred CCCcEEEEEEe-cCCcchHHHHHHhhcccCCceEEEEEeCCCCCCCCC--C----CCCCcceeeeeCCcceeeCCccHHH
Q 015876 125 RVPKVAFLFLT-RGPVLLAPLWEKFFKGHEGFYSIYVHSSPSFNQSDA--E----PEGSVFYGRRIPSREVKWGGVNMIE 197 (399)
Q Consensus 125 ~~~KIAfLiLa-~~~~~l~~Lwe~lf~~~~~~~sIYIHvD~k~~~~~~--~----~~~~vF~~r~Ips~~V~WG~~SlVe 197 (399)
..|+|..+|.+ +.+..+.+.++.+.+.....+.|.|=-|.+.+.+.. + ....+.+ +.. ...+...
T Consensus 3 ~~p~vsViIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~---i~~-----~n~G~~~ 74 (240)
T 3bcv_A 3 LIPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKV---IHK-----KNAGLGM 74 (240)
T ss_dssp CCCSEEEEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEE---EEC-----CCCCHHH
T ss_pred CCCcEEEEEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEE---EEC-----CCCChHH
Confidence 35789999999 556678999999987555567777755544332110 0 1122222 211 1233445
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCCcccCCh-HHHHHHHhcCCCCc
Q 015876 198 AERRLLANALLDFSNERFVLLSESCIPLFNF-SVIYSHLMNSTQNF 242 (399)
Q Consensus 198 Ael~LL~~AL~d~~~~~fvLLSgsdiPL~s~-~~I~~~L~~~~~sF 242 (399)
|--.+++.| .-+|+++|-..|++-.+. +.+.+.+...+...
T Consensus 75 a~N~g~~~a----~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~ 116 (240)
T 3bcv_A 75 ACNSGLDVA----TGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDA 116 (240)
T ss_dssp HHHHHHHHC----CSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHc----CCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCE
Confidence 554555544 458999998888764332 33444443333333
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=12.01 E-value=5.4e+02 Score=25.93 Aligned_cols=90 Identities=11% Similarity=-0.006 Sum_probs=54.5
Q ss_pred CCCcEEEEEEe-cCCcchHHHHHHhhcccCCceEEEEEeCCCCCCCCC------CCCCCcceeeeeCCcceeeCCccHHH
Q 015876 125 RVPKVAFLFLT-RGPVLLAPLWEKFFKGHEGFYSIYVHSSPSFNQSDA------EPEGSVFYGRRIPSREVKWGGVNMIE 197 (399)
Q Consensus 125 ~~~KIAfLiLa-~~~~~l~~Lwe~lf~~~~~~~sIYIHvD~k~~~~~~------~~~~~vF~~r~Ips~~V~WG~~SlVe 197 (399)
..|+|+.+|.+ +....+.+.++.+.+.....+.|+|--|.+.+.+.. .....+.+ +. -...+...
T Consensus 373 ~~~~vsiii~~yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~~---~~-----~~n~G~~~ 444 (625)
T 2z86_A 373 RVPLVSIYIPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRF---IS-----QKNKGIGS 444 (625)
T ss_dssp SSCSEEEEEEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEE---EE-----ECCCCHHH
T ss_pred cCCeEEEEEeCCCCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCCcEEE---Ee-----CCCCCHHH
Confidence 35789999999 556678999999987555667888766655433210 01122221 21 12223455
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCCcccC
Q 015876 198 AERRLLANALLDFSNERFVLLSESCIPLF 226 (399)
Q Consensus 198 Ael~LL~~AL~d~~~~~fvLLSgsdiPL~ 226 (399)
|--.+++.| ..+|+++|-..|++--
T Consensus 445 a~n~g~~~a----~g~~i~~ld~D~~~~~ 469 (625)
T 2z86_A 445 ASNTAVRLC----RGFYIGQLDSDDFLEP 469 (625)
T ss_dssp HHHHHHHHC----CSSEEEECCTTCEECT
T ss_pred HHHHHHHhc----CCCEEEEECCCcccCh
Confidence 555555554 5588998888888633
No 7
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=9.67 E-value=3e+02 Score=19.70 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=31.7
Q ss_pred CCCccccCCCCcHHHHHHHhcCCccccCCCCCCCCceEeecCCCCchhHHHHhchhhcCC
Q 015876 339 PHPTRFVRSSITVQFLQKLRSGSRCEYNGKRTNICHLFARKFLPNTLDRLLRYAPTVLHI 398 (399)
Q Consensus 339 ~hP~~~~~~D~~~~~l~~lr~~~~C~yng~~~~~~~LFARKF~~~~~~~Ll~~~~~~~~~ 398 (399)
.||+.|+..- ..|..-|.+ .=.-|||.......-++.....+||
T Consensus 9 sh~r~~G~g~------------~rC~vcGr~----~g~iRkfGL~~cR~cfRe~A~~iGF 52 (56)
T 3iz6_N 9 SHPKNYGAGS------------RVCRVCGNS----HGLIRKYGLMCCRQCFRSDAKDIGF 52 (56)
T ss_dssp CCCCCCCCCC------------CCCSSCCCS----CCCTTTTSCTTHHHHHHTTCCSTTC
T ss_pred CCccccCCCc------------ceeecCCCC----cccccccCCcHHHHHHHHHHHhcCc
Confidence 4899998653 356666654 2356999998778778877777887
No 8
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=8.74 E-value=6.9e+02 Score=26.06 Aligned_cols=104 Identities=8% Similarity=-0.012 Sum_probs=61.0
Q ss_pred CCCCcEEEEEEe-cCCcchHHHHHHhhcccC---CceEEEEEeCCCCCCC-CCCC--------CCCcceeeeeCCcceee
Q 015876 124 KRVPKVAFLFLT-RGPVLLAPLWEKFFKGHE---GFYSIYVHSSPSFNQS-DAEP--------EGSVFYGRRIPSREVKW 190 (399)
Q Consensus 124 ~~~~KIAfLiLa-~~~~~l~~Lwe~lf~~~~---~~~sIYIHvD~k~~~~-~~~~--------~~~vF~~r~Ips~~V~W 190 (399)
.+.|||+.+|.+ +.+..+.+.++.+.+... ..+.|+| +|..+++. .... ...|-+ |. =
T Consensus 177 ~~~pkVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EIIV-VDNgStD~s~~~~~~e~~~~~~~~I~v---I~-----~ 247 (657)
T 4fix_A 177 PGTANIAVGIPTFNRPADCVNALRELTADPLVDQVIGAVIV-PDQGERKVRDHPDFPAAAARLGSRLSI---HD-----Q 247 (657)
T ss_dssp CSCCCEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEEEE-EECSSSCGGGSTTHHHHHHHHGGGEEE---EE-----C
T ss_pred CCCCeEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEEEE-EECcCCCccchHHHHHHHHhcCCCEEE---EE-----C
Confidence 457899999999 555678888888865322 3334555 56555431 1000 011211 21 1
Q ss_pred CCccHHHHHHHHHHHHHhCCCCCEEEEecCCCcccCC-hHHHHHHHh
Q 015876 191 GGVNMIEAERRLLANALLDFSNERFVLLSESCIPLFN-FSVIYSHLM 236 (399)
Q Consensus 191 G~~SlVeAel~LL~~AL~d~~~~~fvLLSgsdiPL~s-~~~I~~~L~ 236 (399)
+..+.-.|--++++.|....+.+|+++|-..+++-.+ .+.+.+++.
T Consensus 248 ~N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~ 294 (657)
T 4fix_A 248 PNLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHR 294 (657)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHH
Confidence 2344556777888998876578999999887776422 233444443
No 9
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=7.90 E-value=1.1e+02 Score=24.03 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=16.7
Q ss_pred EecCCCcccCChHHHHHHHh
Q 015876 217 LLSESCIPLFNFSVIYSHLM 236 (399)
Q Consensus 217 LLSgsdiPL~s~~~I~~~L~ 236 (399)
+|..+|+|+++.+++..-+.
T Consensus 60 ll~~~DFP~ksA~~lAd~iv 79 (84)
T 1iio_A 60 VLTADDFPFKSAEEVADTIV 79 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHH
T ss_pred hCCcccCCCCCHHHHHHHHH
Confidence 46678999999999988774
No 10
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=7.82 E-value=1.5e+02 Score=19.87 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=7.4
Q ss_pred CCCChHHHH
Q 015876 101 HDMEDAELL 109 (399)
Q Consensus 101 ~~~~d~el~ 109 (399)
+.+|||||=
T Consensus 21 rpltDEeLD 29 (39)
T 3lqv_P 21 RPLSDEELD 29 (39)
T ss_dssp CCCCHHHHH
T ss_pred CCCCHHHHH
Confidence 578999984
Done!