Query 015876
Match_columns 399
No_of_seqs 257 out of 759
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 04:03:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015876.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015876hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 59.4 21 0.0015 29.5 9.3 110 127-243 1-122 (255)
2 d1omza_ c.68.1.15 (A:) Alpha-1 19.2 91 0.0066 23.9 6.0 99 128-238 4-109 (265)
3 d2qalc1 d.52.3.1 (C:1-105) Rib 12.4 32 0.0024 25.9 1.1 29 273-301 18-46 (105)
4 d1iioa_ a.39.4.1 (A:) Hypothet 10.4 34 0.0025 24.9 0.6 20 217-236 60-79 (84)
5 d1d4ta_ d.93.1.1 (A:) The Xlp 10.3 73 0.0053 22.7 2.6 22 184-205 2-23 (104)
6 d1umka2 c.25.1.1 (A:154-300) c 10.2 1.1E+02 0.0082 22.8 3.9 40 124-163 15-55 (147)
7 d1n26a2 b.1.2.1 (A:94-195) Int 9.9 45 0.0032 25.1 1.1 23 362-384 19-45 (102)
8 d2d30a1 c.97.1.1 (A:1-124) mon 8.6 1.2E+02 0.0091 22.8 3.5 90 103-235 1-93 (124)
9 d2uubc1 d.52.3.1 (C:2-106) Rib 7.8 46 0.0033 24.9 0.4 29 273-301 18-46 (105)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 7.3 1.2E+02 0.009 18.2 2.2 11 34-44 21-31 (37)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=59.45 E-value=21 Score=29.49 Aligned_cols=110 Identities=10% Similarity=0.083 Sum_probs=64.0
Q ss_pred CcEEEEEEe-cCCcchHHHHHHhhcccCCceEEEEEeCCCCCCCC-----CCCCCCcceeeeeCCcceee----CCccHH
Q 015876 127 PKVAFLFLT-RGPVLLAPLWEKFFKGHEGFYSIYVHSSPSFNQSD-----AEPEGSVFYGRRIPSREVKW----GGVNMI 196 (399)
Q Consensus 127 ~KIAfLiLa-~~~~~l~~Lwe~lf~~~~~~~sIYIHvD~k~~~~~-----~~~~~~vF~~r~Ips~~V~W----G~~SlV 196 (399)
|||..+|-+ +++.-+++.++.+.+.....+.|+|+-|.+.+.+. +.....+ +.+......+ ...++-
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i---~~~~~~~~~~~~~~~~~g~~ 77 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRV---RFYQSDISGVKERTEKTRYA 77 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTE---EEEECCCCSHHHHHSSCHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhccc---ccccccccccccccccchhc
Confidence 789999999 55666899999988766677899998886653321 0001111 0011111100 223333
Q ss_pred HHHHHHHHHHHhCCCCCEEEEecCCCcccCC-hHHHHHHHh-cCCCCcE
Q 015876 197 EAERRLLANALLDFSNERFVLLSESCIPLFN-FSVIYSHLM-NSTQNFV 243 (399)
Q Consensus 197 eAel~LL~~AL~d~~~~~fvLLSgsdiPL~s-~~~I~~~L~-~~~~sFI 243 (399)
.|--.+++. ...+|++.|-..|++..+ .+.+.+++. +.+..++
T Consensus 78 ~a~N~gi~~----a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v 122 (255)
T d1qg8a_ 78 ALINQAIEM----AEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHHHH----CCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred ccccccccc----cccccccccccccccccchHHHHHHHHHhCCCCCeE
Confidence 333333333 367899999999999765 344455553 4455555
No 2
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.23 E-value=91 Score=23.89 Aligned_cols=99 Identities=8% Similarity=0.037 Sum_probs=57.0
Q ss_pred cEEEEEEe-cCCcchHHHHHHhhcccCCceEEEEEeCCCCCCCCCC-----CCCCcceeeeeCCcceeeCCccHHHHHHH
Q 015876 128 KVAFLFLT-RGPVLLAPLWEKFFKGHEGFYSIYVHSSPSFNQSDAE-----PEGSVFYGRRIPSREVKWGGVNMIEAERR 201 (399)
Q Consensus 128 KIAfLiLa-~~~~~l~~Lwe~lf~~~~~~~sIYIHvD~k~~~~~~~-----~~~~vF~~r~Ips~~V~WG~~SlVeAel~ 201 (399)
|+..+|.| +.+..+++.++.+.+.. ....+.|..|.+++..... ....... + ..-.++|.+- |
T Consensus 4 ~~tvii~tyn~~~~l~~~l~sl~~q~-~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~---~--~~~~~~g~~~--a--- 72 (265)
T d1omza_ 4 SFTLIMQTYNRTDLLLRLLNHYQAVP-SLHKVIVVWNNVGEKGPEELWNSLGPHPIPV---I--FKPQTANKMR--N--- 72 (265)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHTTST-TEEEEEEEECCTTCCCTHHHHHHTCCCSSCE---E--EEECSSCCGG--G---
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHcCC-CcCeEEEEECCCCCccHHHHHHHhcccceEE---E--EecCCCCchh--h---
Confidence 67888999 66678999999997643 3345788888776554310 1111111 1 1123455442 2
Q ss_pred HHHHHHhCCCCCEEEEecCCCcccCC-hHHHHHHHhcC
Q 015876 202 LLANALLDFSNERFVLLSESCIPLFN-FSVIYSHLMNS 238 (399)
Q Consensus 202 LL~~AL~d~~~~~fvLLSgsdiPL~s-~~~I~~~L~~~ 238 (399)
+-.+++....+|++.|=..|++-.+ .+.+.+.+...
T Consensus 73 -~n~~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~ 109 (265)
T d1omza_ 73 -RLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQF 109 (265)
T ss_dssp -GGSCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTS
T ss_pred -hhhhHHhCCcCEEEEeCcccCCCHHHHHHHHHHHHhC
Confidence 1234444567999999877777443 34455555443
No 3
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.40 E-value=32 Score=25.92 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=23.7
Q ss_pred ccceEEecHhHHHHhhhccchhHHHHhhh
Q 015876 273 GSQWFQMDRNLATEVVSDTTYFPLFQKYC 301 (399)
Q Consensus 273 GSQWf~LtR~~a~~Il~d~~~~~~F~~~c 301 (399)
.|.||+=.++.+++|.+|........+.+
T Consensus 18 ~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~ 46 (105)
T d2qalc1 18 NSTWFANTKEFADNLDSDFKVRQYLTKEL 46 (105)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEcCCccchHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999988765555554
No 4
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=10.36 E-value=34 Score=24.93 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=17.1
Q ss_pred EecCCCcccCChHHHHHHHh
Q 015876 217 LLSESCIPLFNFSVIYSHLM 236 (399)
Q Consensus 217 LLSgsdiPL~s~~~I~~~L~ 236 (399)
+|+++|||+++.+++.+-++
T Consensus 60 ~l~~~DFP~ksae~lad~ii 79 (84)
T d1iioa_ 60 VLTADDFPFKSAEEVADTIV 79 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHH
T ss_pred hcCcccCCCCCHHHHHHHHH
Confidence 47789999999999988774
No 5
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.26 E-value=73 Score=22.70 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=18.1
Q ss_pred CCcceeeCCccHHHHHHHHHHH
Q 015876 184 PSREVKWGGVNMIEAERRLLAN 205 (399)
Q Consensus 184 ps~~V~WG~~SlVeAel~LL~~ 205 (399)
++.+-.||.+|.-+||..|.+.
T Consensus 2 e~~pwyhG~isR~eAe~lL~~~ 23 (104)
T d1d4ta_ 2 DAVAVYHGKISRETGEKLLLAT 23 (104)
T ss_dssp TTCTTBCCSCCHHHHHHHHHHH
T ss_pred CcCCccccCCCHHHHHHHHhhC
Confidence 3456789999999999888765
No 6
>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.18 E-value=1.1e+02 Score=22.82 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=23.8
Q ss_pred CCCCcEEEEEEe-cCCcchHHHHHHhhcccCCceEEEEEeC
Q 015876 124 KRVPKVAFLFLT-RGPVLLAPLWEKFFKGHEGFYSIYVHSS 163 (399)
Q Consensus 124 ~~~~KIAfLiLa-~~~~~l~~Lwe~lf~~~~~~~sIYIHvD 163 (399)
.+..|--.||-+ -|-.|+..+++.+.+.....-.|.+|.-
T Consensus 15 ~~~~k~i~lIagGtGItP~~s~l~~~l~~~~~~~~i~L~~~ 55 (147)
T d1umka2 15 IRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFA 55 (147)
T ss_dssp EEECSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEE
T ss_pred cccCCeEEEEECCeecchHHHHHHHHHhcCCCCceEEEEEE
Confidence 344455556666 7778888888887653333334554433
No 7
>d1n26a2 b.1.2.1 (A:94-195) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.89 E-value=45 Score=25.06 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=16.1
Q ss_pred ccccCCC----CCCCCceEeecCCCCc
Q 015876 362 RCEYNGK----RTNICHLFARKFLPNT 384 (399)
Q Consensus 362 ~C~yng~----~~~~~~LFARKF~~~~ 384 (399)
.|+|..+ ++..|+|++|||..+.
T Consensus 19 ~CEW~p~~~psp~t~avLlvRkf~~~~ 45 (102)
T d1n26a2 19 VCEWGPRSTPSLTTKAVLLVRKFQNSP 45 (102)
T ss_dssp EEEECCSSCCCTTCEEEEEEEEESSSS
T ss_pred eeeecCCCCCCCCceEEEEEEeccCCC
Confidence 4666543 3567999999997663
No 8
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]}
Probab=8.60 E-value=1.2e+02 Score=22.83 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=52.1
Q ss_pred CChHHHHhHhhcCCCCCCCCCCCCCcEEEEEEe-cCCcchHHHHHHhhcccCCceEEEEEeCCCCCCCCCCCCCCcceee
Q 015876 103 MEDAELLWRASVVPKIPEYPFKRVPKVAFLFLT-RGPVLLAPLWEKFFKGHEGFYSIYVHSSPSFNQSDAEPEGSVFYGR 181 (399)
Q Consensus 103 ~~d~el~~~a~~~~~~~~~p~~~~~KIAfLiLa-~~~~~l~~Lwe~lf~~~~~~~sIYIHvD~k~~~~~~~~~~~vF~~r 181 (399)
|+++||+..|.-+-...-.||++ .+++=.+++ .|. || .|-
T Consensus 1 m~~~~L~~~A~~a~~~ayaPyS~-f~VGAal~~~~G~-------------------i~-------------------~G~ 41 (124)
T d2d30a1 1 MNSKQLIQEAIEARKQAYVPYSK-FQVGAALLTQDGK-------------------VY-------------------RGC 41 (124)
T ss_dssp CCHHHHHHHHHHHHTTCBCTTTC-CCEEEEEEETTCC-------------------EE-------------------EEE
T ss_pred CCHHHHHHHHHHHHHcCcCCccC-CcEEEEEEeCCCC-------------------EE-------------------EEE
Confidence 78899999996655555567765 456555554 332 22 221
Q ss_pred eeCCcceeeCCccHHHHHHHHHHHHHhCC--CCCEEEEecCCCcccCChHHHHHHH
Q 015876 182 RIPSREVKWGGVNMIEAERRLLANALLDF--SNERFVLLSESCIPLFNFSVIYSHL 235 (399)
Q Consensus 182 ~Ips~~V~WG~~SlVeAel~LL~~AL~d~--~~~~fvLLSgsdiPL~s~~~I~~~L 235 (399)
.++ .. .++.+ +=||+..+.+|+... ....++..+.++=|+-+-=.-.++|
T Consensus 42 NvE--n~-s~~~~-~CAEr~Ai~~a~~~g~~~~~~i~v~~~~~~~~~PCG~CRQ~l 93 (124)
T d2d30a1 42 NVE--NA-SYGLC-NCAERTALFKAVSEGDKEFVAIAIVADTKRPVPPCGACRQVM 93 (124)
T ss_dssp CBC--CS-SGGGC-BCHHHHHHHHHHHTTCCCEEEEEEEESCSSCCCCCHHHHHHH
T ss_pred eec--cc-cCCcc-cCHHHHHHHHHHhcCCceeEEEEEEcCCCCccCCchHHHHHH
Confidence 111 01 11222 368888888888864 4566777777776665544444444
No 9
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=7.80 E-value=46 Score=24.91 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=23.7
Q ss_pred ccceEEecHhHHHHhhhccchhHHHHhhh
Q 015876 273 GSQWFQMDRNLATEVVSDTTYFPLFQKYC 301 (399)
Q Consensus 273 GSQWf~LtR~~a~~Il~d~~~~~~F~~~c 301 (399)
.|.||+=.++.+.+|.+|......+.+.+
T Consensus 18 ~S~W~a~~~~y~~~l~eD~~IR~~i~k~~ 46 (105)
T d2uubc1 18 ESRWYAGKKQYRHLLLEDQRIRGLLEKEL 46 (105)
T ss_dssp SCBCCCCTTTTTHHHHHHHHHHHHHHHST
T ss_pred CceEcCChhhhHHHHHHHHHHHHHHHhhc
Confidence 79999989999999999988765555543
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.35 E-value=1.2e+02 Score=18.18 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=5.8
Q ss_pred HHHHHHhhhhh
Q 015876 34 FFIFFGCGLIF 44 (399)
Q Consensus 34 ~~~~~~~~~~~ 44 (399)
.|++|.+|+++
T Consensus 21 lLlifvl~vLF 31 (37)
T d2axtl1 21 LLLILVLALLF 31 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35556555544
Done!