BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015877
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 147 bits (372), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 156/317 (49%), Gaps = 29/317 (9%)
Query: 33 VNGSHQFKITGYSLSKGLGIGKYIASDTFMVGG---YAWAIYFYPDGKSVEDNAAYVSLF 89
V S+ + I +S + +G+ I S TF G W + P G E
Sbjct: 5 VKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYL 63
Query: 90 IALASEGTDVRALFELTLLDQSGKERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRT 149
+ ++ ++VRA F+ ++L+ G+E + +ES +G WG+K+F +R
Sbjct: 64 LLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRG 115
Query: 150 LL--EQSDYLKGDCLSVHCSVGVVKS--HTEGPKIYS-IAIPPSNIGQHFGQLLESGKRT 204
L E + L D L++ C V VV+ + G + + +P + G L E+ + T
Sbjct: 116 FLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFT 175
Query: 205 DVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYW 264
D V G+ F AHK +LAARSPVF A M++ +++ D+E VFK ++ FIY
Sbjct: 176 DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT 235
Query: 265 DSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLAL 324
P++++ M+ LLAAAD+Y LERL+++CE LC ++++ A L L
Sbjct: 236 GKAPNLDK------------MADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILIL 283
Query: 325 AEQHHCFQLKSVCLKFV 341
A+ H QLK+ + F+
Sbjct: 284 ADLHSADQLKTQAVDFI 300
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 12/153 (7%)
Query: 183 IAIPPSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNT 242
+ +P + G L E+ + TD V G+ F AHK +LAARSPVF A M++
Sbjct: 5 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKK 64
Query: 243 QCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLR 302
+++ D+E VFK ++ FIY P++++ M+ LLAAAD+Y LERL+
Sbjct: 65 NRVEINDVEPEVFKEMMCFIYTGKAPNLDK------------MADDLLAAADKYALERLK 112
Query: 303 LLCEANLCEDVAINTVATTLALAEQHHCFQLKS 335
++CE LC ++++ A L LA+ H QLK+
Sbjct: 113 VMCEDALCSNLSVENAAEILILADLHSADQLKT 145
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 12/159 (7%)
Query: 183 IAIPPSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNT 242
+ +P + G L E+ + TD V G+ F AHK +LAARSPVF A ++
Sbjct: 14 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKK 73
Query: 243 QCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLR 302
+++ D+E VFK FIY P++ + LLAAAD+Y LERL+
Sbjct: 74 NRVEINDVEPEVFKEXXCFIYTGKAPNL------------DKXADDLLAAADKYALERLK 121
Query: 303 LLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFV 341
+ CE LC ++++ A L LA+ H QLK+ + F+
Sbjct: 122 VXCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI 160
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 33 VNGSHQFKITGYSLSKGLGIGKYIASDTFMVGG---YAWAIYFYPDGKSVEDNAAYVSLF 89
V S+ + I +S + +G+ I S TF G W + P G E
Sbjct: 9 VKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYL 67
Query: 90 IALASEGTDVRALFELTLLDQSGKERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRT 149
+ ++ ++VRA F+ ++L+ G+E + +ES +G WG+K+F +R
Sbjct: 68 LLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRD 119
Query: 150 LL--EQSDYLKGDCLSVHCSVGVVK 172
L E + L D L++ C V VV+
Sbjct: 120 FLLDEANGLLPDDKLTLFCEVSVVQ 144
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 14/142 (9%)
Query: 36 SHQFKITGYSLSKGLGIGKYIASDTFMVGG---YAWAIYFYPDGKSVEDNAAYVSLFIAL 92
S+ + I +S + +G+ I S TF G W + P G E + +
Sbjct: 13 SYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 71
Query: 93 ASEGTDVRALFELTLLDQSGKERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRTLL- 151
+ ++VRA F+ ++L+ G+E + S +G WG+K+F +R L
Sbjct: 72 SCPKSEVRAKFKFSILNAKGEETKAMESQRAYRF--------VQGKDWGFKKFIRRDFLL 123
Query: 152 -EQSDYLKGDCLSVHCSVGVVK 172
E + L D L++ C V VV+
Sbjct: 124 DEANGLLPDDKLTLFCEVSVVQ 145
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 33 VNGSHQFKITGYSLSKGLGIGKYIASDTFMVGG---YAWAIYFYPDGKSVEDNAAYVSLF 89
V S+ + I +S + +G+ I S TF G W + P G E
Sbjct: 9 VKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYL 67
Query: 90 IALASEGTDVRALFELTLLDQSGKERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRT 149
+ ++ ++VRA F+ ++L+ G+E + +ES +G WG+K+F +R
Sbjct: 68 LLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRG 119
Query: 150 LL--EQSDYLKGDCLSVHCSVGVVK 172
L E + L D L++ C V VV+
Sbjct: 120 FLLDEANGLLPDDKLTLFCEVSVVQ 144
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 205 DVNFEVN----GETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLH 260
DV+F V T AHK VLA S VF A YG + + ++ I + D+E F LL
Sbjct: 10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAXFYGDLAEVKSE-IHIPDVEPAAFLILLK 68
Query: 261 FIYWDSLPDMEELTGMSSKWAS 282
+ Y D + D+E T +++ +A+
Sbjct: 69 YXYSDEI-DLEADTVLATLYAA 89
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 192 QHFGQLL-------ESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQL-YGPMKDQ-NT 242
QH +LL E + D + ++GE K +LAA SP R +L Y P KD +T
Sbjct: 13 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGST 72
Query: 243 QCIKVEDMEAPVFKALLHFIY 263
I++E + V + +L +I+
Sbjct: 73 YKIELEGISVXVXREILDYIF 93
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 192 QHFGQLL-------ESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQL-YGPMKDQ-NT 242
QH +LL E + D + ++GE K +LAA SP R +L Y P KD +T
Sbjct: 13 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGST 72
Query: 243 QCIKVEDMEAPVFKALLHFIY 263
I++E + V + +L +I+
Sbjct: 73 YKIELEGISVXVXREILDYIF 93
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of
Human Gigaxonin
Length = 144
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 192 QHFGQLL-------ESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQL-YGPMKDQ-NT 242
QH +LL E + D + ++GE K +LAA SP R +L Y P KD +T
Sbjct: 29 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGST 88
Query: 243 QCIKVEDMEAPVFKALLHFIY 263
I++E + V + +L +I+
Sbjct: 89 YKIELEGISVMVMREILDYIF 109
>pdb|1LB5|A Chain A, Traf6-Rank Complex
pdb|1LB6|A Chain A, Traf6-Cd40 Complex
Length = 160
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 18/130 (13%)
Query: 56 IASDTFMVG--GYAWAIYFYPDGKSVEDNAAYVSLFIALASEGTD------VRALFELTL 107
I S F G GY + + + + A Y+SLF+ D + LT+
Sbjct: 29 IHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTI 88
Query: 108 LDQSGKERHKVHSHFGRTLESGPYTLKYRGSM-------WGYKRFFKRTLLEQSDYLKGD 160
LDQS + H +++ P L ++ +GY F L Q ++K D
Sbjct: 89 LDQSEAPVRQNHEEI---MDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDD 145
Query: 161 CLSVHCSVGV 170
L V C V
Sbjct: 146 TLLVRCEVST 155
>pdb|1LB4|A Chain A, Traf6 Apo Structure
Length = 159
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 18/130 (13%)
Query: 56 IASDTFMVG--GYAWAIYFYPDGKSVEDNAAYVSLFIALASEGTD------VRALFELTL 107
I S F G GY + + + + A Y+SLF+ D + LT+
Sbjct: 28 IHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTI 87
Query: 108 LDQSGKERHKVHSHFGRTLESGPYTLKYRGSM-------WGYKRFFKRTLLEQSDYLKGD 160
LDQS + H +++ P L ++ +GY F L Q ++K D
Sbjct: 88 LDQSEAPVRQNHEEI---MDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDD 144
Query: 161 CLSVHCSVGV 170
L V C V
Sbjct: 145 TLLVRCEVST 154
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 205 DVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYW 264
DV V G+ F AH+ VLAA S F +++ G + T + E++ F+ L+ F Y
Sbjct: 38 DVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLP-EEVTVKGFEPLIQFAYT 96
Query: 265 DSL 267
L
Sbjct: 97 AKL 99
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 205 DVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYW 264
DV V G+ F AH+ VLAA S F +++ G D E++ F+ L+ F Y
Sbjct: 31 DVTIFVEGQRFRAHRSVLAACSSYFHSRIVG-QADGELNITLPEEVTVKGFEPLIQFAYT 89
Query: 265 DSL 267
L
Sbjct: 90 AKL 92
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 204 TDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPV----FKALL 259
TDV V+ E F AHK VL A S +F Y DQ + + V +++ + F LL
Sbjct: 30 TDVVIVVSREQFRAHKTVLMACSGLF----YSIFTDQLKRNLSVINLDPEINPEGFNILL 85
Query: 260 HFIYWDSL 267
F+Y L
Sbjct: 86 DFMYTSRL 93
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 192 QHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDME 251
Q + E G+ D +V G F AH VLA S F++ LYG D + + +
Sbjct: 13 QELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQS-LYG---DGSGGSVVLPAGF 68
Query: 252 APVFKALLHFIY 263
A +F LL F Y
Sbjct: 69 AEIFGLLLDFFY 80
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 147 KRTLLEQSDYLKGDCLSVHCSVGVVKSHTEGP 178
K +LL Y+ CL C VG+VK+ +GP
Sbjct: 113 KVSLLRALVYMIAQCLGAICGVGLVKAFMKGP 144
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 196 QLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVF 255
Q+ +G DV V+ + F AH+ VLA S +F + +N+Q ++ + F
Sbjct: 20 QMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFH-----RNSQHYTLDFLSPKTF 74
Query: 256 KALLHFIYWDSL 267
+ +L + Y +L
Sbjct: 75 QQILEYAYTATL 86
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 196 QLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVF 255
Q+ +G DV V+ + F AH+ VLA S +F + +N+Q ++ + F
Sbjct: 21 QMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFH-----RNSQHYTLDFLSPKTF 75
Query: 256 KALLHFIYWDSL 267
+ +L + Y +L
Sbjct: 76 QQILEYAYTATL 87
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 147 KRTLLEQSDYLKGDCLSVHCSVGVVKSHTEGP 178
K +LL Y+ CL C VG+VK+ +GP
Sbjct: 136 KVSLLRALVYMIAQCLGAICGVGLVKAFMKGP 167
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 147 KRTLLEQSDYLKGDCLSVHCSVGVVKSHTEGP 178
K +LL Y+ CL C VG+VK+ +GP
Sbjct: 113 KVSLLRALVYMIAQCLGAICGVGLVKAFMKGP 144
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 188 SNIGQHFGQLLES-------GKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQ 240
S+ QH +LE G D F V+G F AHK VLAA S F+ L+ KD
Sbjct: 5 SDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFK-MLFVDQKD- 62
Query: 241 NTQCIKVEDMEAPVFKALLHFIY 263
+ ++ A +L F+Y
Sbjct: 63 ---VVHLDISNAAGLGQVLEFMY 82
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 205 DVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYW 264
DV V + F AH+ VLAA S F L G K+ + E++ A F LL F Y
Sbjct: 34 DVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLP-EEVTARGFGPLLQFAYT 92
Query: 265 DSL 267
L
Sbjct: 93 AKL 95
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 188 SNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKV 247
S++ + +L TDV V+ E F AHK VL A S +F Y DQ + V
Sbjct: 17 SDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF----YSIFTDQLKCNLSV 72
Query: 248 EDMEAPV----FKALLHFIYWDSL 267
+++ + F LL F+Y L
Sbjct: 73 INLDPEINPEGFCILLDFMYTSRL 96
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 21/138 (15%)
Query: 212 GETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDM------EAPVFKALLHFIYWD 265
G F AH+ VLAA + F L G + + +++ E +A++ ++Y
Sbjct: 62 GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMY-- 119
Query: 266 SLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALA 325
TG ST +L ADR+ L RL+ C L + + ++ +LA
Sbjct: 120 --------TGRIR--VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLA 169
Query: 326 EQHHCFQLKSVCLKFVAM 343
H + L + LK M
Sbjct: 170 ---HMYTLSQLALKAADM 184
>pdb|3IZR|A Chain A, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 216
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 331 FQLKSVCLKFVAMPENLRGGYSIDSIHIQQIYIVSNNFVITLCFLVWKEKKLFY 384
FQLK V VA+ G S+D IQQ +S NF+++L W+ + Y
Sbjct: 156 FQLKKVLCMGVAV-----GNLSMDEKQIQQNIQMSVNFLVSLLKKNWQNVRCLY 204
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 192 QHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDME 251
Q + E G+ D +V G F AH VLA S F+ ++YG D + +
Sbjct: 14 QELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ-RIYG---DGTGGSVVLPAGF 69
Query: 252 APVFKALLHFIYWDSL 267
A +F LL F Y L
Sbjct: 70 AEIFGLLLDFFYTGHL 85
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 147 KRTLLEQSDYLKGDCLSVHCSVGVVKSHTEGP 178
K LL Y+ CL C VG+VK+ +GP
Sbjct: 132 KVELLRALVYMIAQCLGAICGVGLVKAFMKGP 163
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 147 KRTLLEQSDYLKGDCLSVHCSVGVVKSHTEGP 178
K LL Y+ CL C VG+VK+ +GP
Sbjct: 136 KVELLRALVYMIAQCLGAICGVGLVKAFMKGP 167
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 192 QHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDME 251
+ Q + G D F V+G F AHK VLAA S F+ L+ KD + ++
Sbjct: 14 EQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFK-MLFVDQKD----VVHLDISN 68
Query: 252 APVFKALLHFIY 263
A +L F+Y
Sbjct: 69 AAGLGQVLEFMY 80
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 201 GKRTDVNFEVNGETFAAHKLVLAARSPVFR 230
G DV+ V G F AH+ VLAA S FR
Sbjct: 31 GLYCDVSVVVKGHAFKAHRAVLAASSSYFR 60
>pdb|4GJH|A Chain A, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|B Chain B, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|C Chain C, Crystal Structure Of The Traf Domain Of Traf5
Length = 178
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 100 RALFELTLLDQSGKERHKVHSHFGRTLESGPYTLKYR---GSM---WGYKRFFKRTLLEQ 153
R L LLDQSGK+ H V T ++ P + ++ G M G RF + LE
Sbjct: 99 RQRVTLMLLDQSGKKNHIVE-----TFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLEN 153
Query: 154 SD--YLKGDCLSVHCSVGVV 171
S Y+K D L + +V +
Sbjct: 154 SKNTYIKDDTLFLKVAVDLT 173
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 199 ESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKAL 258
E+G D + F AH+ VLA+ S F A +Y + N + ++A F+ L
Sbjct: 18 EAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGA-IYRSTSENNV-FLDQSQVKADGFQKL 75
Query: 259 LHFIYWDSL 267
L FIY +L
Sbjct: 76 LEFIYTGTL 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,589,390
Number of Sequences: 62578
Number of extensions: 463230
Number of successful extensions: 803
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 780
Number of HSP's gapped (non-prelim): 38
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)