Query 015877
Match_columns 399
No_of_seqs 315 out of 2550
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 01:43:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 100.0 4.9E-33 1.1E-37 279.1 15.4 186 188-395 10-203 (557)
2 PHA02790 Kelch-like protein; P 100.0 1.1E-32 2.5E-37 272.6 11.8 182 190-393 9-196 (480)
3 KOG4441 Proteins containing BT 100.0 8E-32 1.7E-36 269.3 14.8 189 187-395 20-213 (571)
4 PHA03098 kelch-like protein; P 100.0 2.2E-31 4.8E-36 268.6 14.1 172 200-395 6-184 (534)
5 KOG4350 Uncharacterized conser 100.0 1.4E-30 3E-35 235.2 10.1 191 188-396 29-224 (620)
6 cd03774 MATH_SPOP Speckle-type 99.9 3.1E-23 6.6E-28 171.2 14.1 131 32-172 2-138 (139)
7 cd03780 MATH_TRAF5 Tumor Necro 99.9 4.9E-23 1.1E-27 169.7 12.5 131 35-169 1-148 (148)
8 cd03777 MATH_TRAF3 Tumor Necro 99.9 8.6E-23 1.9E-27 174.2 13.2 134 33-170 37-185 (186)
9 cd03781 MATH_TRAF4 Tumor Necro 99.9 6.3E-23 1.4E-27 171.7 12.0 132 35-169 1-154 (154)
10 cd03772 MATH_HAUSP Herpesvirus 99.9 2.9E-22 6.2E-27 165.0 14.5 126 34-172 2-134 (137)
11 cd00270 MATH_TRAF_C Tumor Necr 99.9 1.3E-22 2.7E-27 169.8 10.8 131 35-169 1-149 (149)
12 cd03776 MATH_TRAF6 Tumor Necro 99.9 1E-22 2.3E-27 169.5 10.0 131 35-169 1-147 (147)
13 cd03779 MATH_TRAF1 Tumor Necro 99.9 3.3E-22 7.2E-27 163.8 12.0 130 35-169 1-147 (147)
14 cd03771 MATH_Meprin Meprin fam 99.9 5.9E-22 1.3E-26 165.3 12.8 132 34-169 1-167 (167)
15 KOG2075 Topoisomerase TOP1-int 99.9 9.6E-22 2.1E-26 182.4 15.0 190 182-392 93-295 (521)
16 cd03773 MATH_TRIM37 Tripartite 99.9 1.1E-21 2.3E-26 160.7 12.1 124 34-169 4-130 (132)
17 cd03775 MATH_Ubp21p Ubiquitin- 99.9 1.8E-21 3.9E-26 159.4 13.2 117 36-168 2-133 (134)
18 PF00651 BTB: BTB/POZ domain; 99.8 1.1E-19 2.4E-24 144.1 8.7 107 194-312 1-110 (111)
19 cd03778 MATH_TRAF2 Tumor Necro 99.8 6.4E-19 1.4E-23 145.8 12.5 134 33-169 17-164 (164)
20 KOG4682 Uncharacterized conser 99.8 1.2E-19 2.7E-24 164.6 8.6 177 194-390 60-245 (488)
21 KOG4591 Uncharacterized conser 99.8 2.7E-19 5.8E-24 147.6 9.6 160 188-363 51-213 (280)
22 cd00121 MATH MATH (meprin and 99.8 1.9E-18 4.1E-23 139.9 13.9 120 35-169 1-126 (126)
23 PF00917 MATH: MATH domain; I 99.7 5E-17 1.1E-21 130.4 11.3 113 41-170 1-119 (119)
24 cd03783 MATH_Meprin_Alpha Mepr 99.7 5.1E-17 1.1E-21 133.7 9.9 133 35-169 2-167 (167)
25 smart00225 BTB Broad-Complex, 99.7 1.2E-16 2.7E-21 121.0 9.5 90 205-306 1-90 (90)
26 cd03782 MATH_Meprin_Beta Mepri 99.7 8.2E-16 1.8E-20 125.8 10.7 132 35-168 2-166 (167)
27 KOG0783 Uncharacterized conser 99.6 5E-16 1.1E-20 152.2 4.0 149 201-358 708-858 (1267)
28 smart00061 MATH meprin and TRA 99.5 1E-13 2.2E-18 106.4 10.3 89 37-146 2-95 (95)
29 KOG1987 Speckle-type POZ prote 99.4 9.3E-13 2E-17 123.1 10.9 230 39-356 8-244 (297)
30 COG5077 Ubiquitin carboxyl-ter 99.2 6.7E-11 1.5E-15 115.9 12.7 125 32-173 36-173 (1089)
31 KOG0783 Uncharacterized conser 98.9 1.9E-09 4.1E-14 106.8 5.5 85 184-268 535-635 (1267)
32 PF07707 BACK: BTB And C-termi 98.8 1.3E-09 2.9E-14 84.8 1.6 70 318-395 1-75 (103)
33 smart00875 BACK BTB And C-term 98.6 1.8E-08 3.8E-13 77.9 2.0 69 318-394 1-74 (101)
34 KOG0511 Ankyrin repeat protein 98.5 2.7E-07 5.8E-12 84.3 8.3 133 213-360 301-443 (516)
35 KOG2838 Uncharacterized conser 98.3 7.5E-07 1.6E-11 78.0 5.8 134 188-321 220-396 (401)
36 KOG2838 Uncharacterized conser 98.3 5.5E-07 1.2E-11 78.8 4.7 83 186-268 113-197 (401)
37 KOG2716 Polymerase delta-inter 98.0 3.7E-05 8E-10 67.3 9.5 95 206-311 7-103 (230)
38 PF02214 BTB_2: BTB/POZ domain 97.7 3.1E-05 6.8E-10 58.9 3.7 88 206-305 1-94 (94)
39 KOG3473 RNA polymerase II tran 97.4 0.00095 2.1E-08 49.2 6.9 89 206-297 19-111 (112)
40 smart00512 Skp1 Found in Skp1 97.0 0.0032 7E-08 48.8 7.4 92 206-298 4-104 (104)
41 PF11822 DUF3342: Domain of un 96.9 0.0033 7.2E-08 57.6 7.2 115 213-339 14-140 (317)
42 KOG0511 Ankyrin repeat protein 96.7 0.0036 7.9E-08 57.9 5.7 101 192-306 135-239 (516)
43 KOG1724 SCF ubiquitin ligase, 96.5 0.013 2.9E-07 48.8 7.7 111 211-322 13-136 (162)
44 KOG1863 Ubiquitin carboxyl-ter 96.3 0.0053 1.2E-07 67.0 5.7 153 55-235 42-201 (1093)
45 PF03931 Skp1_POZ: Skp1 family 96.2 0.022 4.8E-07 39.4 6.5 55 206-263 3-58 (62)
46 KOG2714 SETA binding protein S 96.1 0.018 3.9E-07 54.5 7.2 93 205-309 12-111 (465)
47 KOG1665 AFH1-interacting prote 95.7 0.026 5.6E-07 48.7 5.9 93 205-308 10-106 (302)
48 KOG0297 TNF receptor-associate 95.2 0.013 2.8E-07 56.7 2.7 77 33-110 278-365 (391)
49 KOG1778 CREB binding protein/P 93.7 0.041 9E-07 51.1 2.2 143 205-360 28-171 (319)
50 COG5201 SKP1 SCF ubiquitin lig 93.6 0.48 1E-05 37.2 7.5 110 206-318 4-127 (158)
51 KOG2715 Uncharacterized conser 93.2 0.53 1.1E-05 38.9 7.5 97 204-312 21-121 (210)
52 PF01466 Skp1: Skp1 family, di 91.2 0.42 9.2E-06 34.7 4.4 38 281-318 11-48 (78)
53 KOG2723 Uncharacterized conser 75.0 6.4 0.00014 34.6 5.1 93 206-309 11-106 (221)
54 KOG2075 Topoisomerase TOP1-int 65.4 7.5 0.00016 38.0 3.7 45 312-361 184-228 (521)
55 KOG3840 Uncharaterized conserv 64.1 7.3 0.00016 35.6 3.2 87 201-298 93-184 (438)
56 PF00651 BTB: BTB/POZ domain; 58.4 8.9 0.00019 29.2 2.5 29 314-342 80-108 (111)
57 PF11822 DUF3342: Domain of un 45.0 6.6 0.00014 36.5 -0.2 42 311-354 70-111 (317)
58 PF07707 BACK: BTB And C-termi 42.8 31 0.00068 25.7 3.3 55 287-342 2-71 (103)
59 KOG4682 Uncharacterized conser 38.5 27 0.00059 33.5 2.7 31 281-311 170-200 (488)
60 PHA03098 kelch-like protein; P 35.7 31 0.00067 35.0 2.9 31 312-342 72-102 (534)
61 PHA02713 hypothetical protein; 33.6 62 0.0013 33.1 4.7 31 312-342 90-120 (557)
62 smart00875 BACK BTB And C-term 31.5 54 0.0012 24.1 3.0 25 288-312 3-27 (101)
63 PHA02790 Kelch-like protein; P 25.0 45 0.00098 33.4 1.9 31 312-342 87-117 (480)
64 PF09593 Pathogen_betaC1: Beta 22.7 33 0.00072 26.9 0.4 55 211-268 20-78 (117)
65 KOG1987 Speckle-type POZ prote 22.3 2.3E+02 0.0049 26.0 6.0 49 41-95 18-68 (297)
66 KOG4350 Uncharacterized conser 22.2 5.8E+02 0.013 24.9 8.4 31 312-342 112-142 (620)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-33 Score=279.11 Aligned_cols=186 Identities=18% Similarity=0.259 Sum_probs=172.4
Q ss_pred CchhHhHHHhhhcCCcceEEEEEc-CeEEehhhHHHHhcCHHHHHhhcCCCCCCC-cceEEeeCCCHHHHHHHhhhhccC
Q 015877 188 SNIGQHFGQLLESGKRTDVNFEVN-GETFAAHKLVLAARSPVFRAQLYGPMKDQN-TQCIKVEDMEAPVFKALLHFIYWD 265 (399)
Q Consensus 188 ~~l~~~l~~l~~~~~~sDv~~~v~-~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~-~~~i~l~~~~~~~f~~~L~~iYt~ 265 (399)
..+.+.|.+|+.++.+|||+|.|+ |++|+|||.|||++|+||++||.++++|.. +.+|.|.++++++|+.+|+|+||+
T Consensus 10 ~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~ 89 (557)
T PHA02713 10 RRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNR 89 (557)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCC
Confidence 567799999999999999999997 899999999999999999999999999764 789999999999999999999998
Q ss_pred CCCCchhhccCCcccchHHHHHHHHHHhhhcChHHHHHHHHHHHhccCChhHHHHHHHHHHHcCchHHHHHHHHhccCcC
Q 015877 266 SLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPE 345 (399)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~ 345 (399)
.+ +.+++++||.+|++|+++.|++.|+++|.+.++++||+.++.+|..+.+..|++.|.+||. +
T Consensus 90 ~i--------------~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~--~ 153 (557)
T PHA02713 90 HI--------------SSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLM--S 153 (557)
T ss_pred CC--------------CHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHH--H
Confidence 64 3678999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cHHHHhcccchHHHHH-----Hhhhch-hhHhHhhhHHHhhHHHHHhcCcccccCC
Q 015877 346 NLRGGYSIDSIHIQQI-----YIVSNN-FVITLCFLVWKEKKLFYELCRPIKCSSI 395 (399)
Q Consensus 346 ~~~~v~~~~~f~~L~~-----~l~~~~-l~~~~~~~~~~E~~v~~~~~~Wi~~n~~ 395 (399)
||.++.++++|.+|+. +|.+|+ | ++.+|++||+++++|++|+..
T Consensus 154 ~f~~v~~~~ef~~L~~~~l~~lL~~d~~l------~v~~Ee~v~eav~~W~~~d~~ 203 (557)
T PHA02713 154 NIPTLITTDAFKKTVFEILFDIISTNDNV------YLYREGYKVTILLKWLEYNYI 203 (557)
T ss_pred HHHHHhCChhhhhCCHHHHHHHhcccccc------CCCcHHHHHHHHHHHHhcCHH
Confidence 9999999999999883 555555 4 899999999999999999864
No 2
>PHA02790 Kelch-like protein; Provisional
Probab=99.98 E-value=1.1e-32 Score=272.65 Aligned_cols=182 Identities=13% Similarity=0.100 Sum_probs=167.2
Q ss_pred hhHhHHHhhhcCCcceEEEEEcCeEEehhhHHHHhcCHHHHHhhcCCCCCCCcceEEe--eCCCHHHHHHHhhhhccCCC
Q 015877 190 IGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKV--EDMEAPVFKALLHFIYWDSL 267 (399)
Q Consensus 190 l~~~l~~l~~~~~~sDv~~~v~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~~~~i~l--~~~~~~~f~~~L~~iYt~~~ 267 (399)
.-+++..|...+.+|||++.+|+ +|+|||+|||+.||||++||.++++|+.+ +|.+ .++++++++.+|+|+|||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l 86 (480)
T PHA02790 9 YCKNILALSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKV 86 (480)
T ss_pred hhhhHHHHHhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeE
Confidence 34677788889999999776655 99999999999999999999999998854 5665 38999999999999999999
Q ss_pred CCchhhccCCcccchHHHHHHHHHHhhhcChHHHHHHHHHHHhccCChhHHHHHHHHHHHcCchHHHHHHHHhccCcCcH
Q 015877 268 PDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENL 347 (399)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~ 347 (399)
. ++.++++++|.+|++||++.+++.|+++|.+.++++||+.++.+|+.|++.+|++.+.+||. +||
T Consensus 87 ~------------it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~--~nF 152 (480)
T PHA02790 87 Y------------IDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIA--KHF 152 (480)
T ss_pred E------------EecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHH--HhH
Confidence 8 89999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHhcc--cchHHHH--HHhhhchhhHhHhhhHHHhhHHHHHhcCccccc
Q 015877 348 RGGYSI--DSIHIQQ--IYIVSNNFVITLCFLVWKEKKLFYELCRPIKCS 393 (399)
Q Consensus 348 ~~v~~~--~~f~~L~--~~l~~~~l~~~~~~~~~~E~~v~~~~~~Wi~~n 393 (399)
.++.++ ++|..|+ .+|.+|.| ++.+|++||+++++|++|.
T Consensus 153 ~~v~~~~~~ef~~L~~~~lLssd~L------~v~~Ee~V~eav~~Wl~~~ 196 (480)
T PHA02790 153 LELEDDIIDNFDYLSMKLILESDEL------NVPDEDYVVDFVIKWYMKR 196 (480)
T ss_pred HHHhcccchhhhhCCHHHhcccccC------CCccHHHHHHHHHHHHHhh
Confidence 999986 8998876 57778887 8999999999999999975
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=8e-32 Score=269.33 Aligned_cols=189 Identities=24% Similarity=0.300 Sum_probs=180.9
Q ss_pred CCchhHhHHHhhhcCCcceEEEEEcCeEEehhhHHHHhcCHHHHHhhcCCCCCCCcceEEeeCCCHHHHHHHhhhhccCC
Q 015877 187 PSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDS 266 (399)
Q Consensus 187 ~~~l~~~l~~l~~~~~~sDv~~~v~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~ 266 (399)
...+.+.+..|++.+.+|||++.+++++|+|||.|||+.||||++||.++++|+.+.+|.+.++++++++.+|+|+||+.
T Consensus 20 ~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~ 99 (571)
T KOG4441|consen 20 SKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGK 99 (571)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcce
Confidence 35577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhccCCcccchHHHHHHHHHHhhhcChHHHHHHHHHHHhccCChhHHHHHHHHHHHcCchHHHHHHHHhccCcCc
Q 015877 267 LPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPEN 346 (399)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 346 (399)
+. ++..++++||.+|++||++.+.+.|.++|.+.++++||+.+..+|+.|++.+|.+.+..|+. .|
T Consensus 100 i~------------i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~--~~ 165 (571)
T KOG4441|consen 100 LE------------ISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYIL--QH 165 (571)
T ss_pred EE------------echHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH--HH
Confidence 98 89999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHhcccchHHHH-----HHhhhchhhHhHhhhHHHhhHHHHHhcCcccccCC
Q 015877 347 LRGGYSIDSIHIQQ-----IYIVSNNFVITLCFLVWKEKKLFYELCRPIKCSSI 395 (399)
Q Consensus 347 ~~~v~~~~~f~~L~-----~~l~~~~l~~~~~~~~~~E~~v~~~~~~Wi~~n~~ 395 (399)
|.++.++++|..|+ .+|.+|+| ++.+|.+||+++++|++|+..
T Consensus 166 F~~v~~~eefl~L~~~~l~~ll~~d~l------~v~~E~~vf~a~~~Wv~~d~~ 213 (571)
T KOG4441|consen 166 FAEVSKTEEFLLLSLEELIGLLSSDDL------NVDSEEEVFEAAMRWVKHDFE 213 (571)
T ss_pred HHHHhccHHhhCCCHHHHHhhccccCC------CcCCHHHHHHHHHHHHhcCHh
Confidence 99999999999988 46777777 999999999999999999864
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=2.2e-31 Score=268.57 Aligned_cols=172 Identities=15% Similarity=0.205 Sum_probs=162.9
Q ss_pred cCCcceEEEEE--cCeEEehhhHHHHhcCHHHHHhhcCCCCCCCcceEEeeCCCHHHHHHHhhhhccCCCCCchhhccCC
Q 015877 200 SGKRTDVNFEV--NGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMS 277 (399)
Q Consensus 200 ~~~~sDv~~~v--~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~ 277 (399)
++.+|||+|.+ +|++|+|||.||+++|+||++||.++++ +.+|.+.+ ++++|+.+|+|+|||++.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~--------- 72 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKIN--------- 72 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceE---------
Confidence 78999999998 9999999999999999999999999887 56899999 999999999999999997
Q ss_pred cccchHHHHHHHHHHhhhcChHHHHHHHHHHHhccCChhHHHHHHHHHHHcCchHHHHHHHHhccCcCcHHHHhcccchH
Q 015877 278 SKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRGGYSIDSIH 357 (399)
Q Consensus 278 ~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~~f~ 357 (399)
++.+++.+||.+|++|+++.|+..|+++|.+.++.+||+.++.+|..|++..|++.|.+||. .||.++.++++|.
T Consensus 73 ---i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~--~nf~~v~~~~~f~ 147 (534)
T PHA03098 73 ---ITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIR--NNIELIYNDPDFI 147 (534)
T ss_pred ---EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHH--HHHHHHhcCchhh
Confidence 88899999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHH-----HHhhhchhhHhHhhhHHHhhHHHHHhcCcccccCC
Q 015877 358 IQQ-----IYIVSNNFVITLCFLVWKEKKLFYELCRPIKCSSI 395 (399)
Q Consensus 358 ~L~-----~~l~~~~l~~~~~~~~~~E~~v~~~~~~Wi~~n~~ 395 (399)
+|+ .+|.++.| .+.+|.+||+++++|++|+..
T Consensus 148 ~l~~~~l~~ll~~~~L------~v~~E~~v~~av~~W~~~~~~ 184 (534)
T PHA03098 148 YLSKNELIKILSDDKL------NVSSEDVVLEIIIKWLTSKKN 184 (534)
T ss_pred cCCHHHHHHHhcCCCc------CcCCHHHHHHHHHHHHhcChh
Confidence 888 36667776 899999999999999999864
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=235.22 Aligned_cols=191 Identities=27% Similarity=0.376 Sum_probs=177.9
Q ss_pred CchhHhHHHhhhcCCcceEEEEEcCeEEehhhHHHHhcCHHHHHhhcCCCCCCCcceEEeeCCCHHHHHHHhhhhccCCC
Q 015877 188 SNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSL 267 (399)
Q Consensus 188 ~~l~~~l~~l~~~~~~sDv~~~v~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~ 267 (399)
..+.+++..++-+++++||+|+|++++|+|||.|||+||.||++|++|+|.|+.+..|++++...++|+.+|+|||||.+
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcce
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCchhhccCCcccchHHHHHHHHHHhhhcChHHHHHHHHHHHhccCChhHHHHHHHHHHHcCchHHHHHHHHhccCcCcH
Q 015877 268 PDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENL 347 (399)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~ 347 (399)
.... ...+...+.|.+|++|++..|.....++|++-+..+|++.++..|..|++.+|-+.|+.|+. +|.
T Consensus 109 ~l~~---------~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmD--rnA 177 (620)
T KOG4350|consen 109 DLAG---------VEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMD--RNA 177 (620)
T ss_pred eccc---------chHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHh--cCH
Confidence 6433 67788999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHhcccchHHHHH-----HhhhchhhHhHhhhHHHhhHHHHHhcCcccccCCC
Q 015877 348 RGGYSIDSIHIQQI-----YIVSNNFVITLCFLVWKEKKLFYELCRPIKCSSIG 396 (399)
Q Consensus 348 ~~v~~~~~f~~L~~-----~l~~~~l~~~~~~~~~~E~~v~~~~~~Wi~~n~~~ 396 (399)
.+++..++|..|+. +|.+|.+ ...|.++|.|+..|.++|+.+
T Consensus 178 ~~lL~~~sFn~LSk~sL~e~l~RDsF-------fApE~~IFlAv~~W~~~Nske 224 (620)
T KOG4350|consen 178 DQLLEDPSFNRLSKDSLKELLARDSF-------FAPELKIFLAVRSWHQNNSKE 224 (620)
T ss_pred HhhhcCcchhhhhHHHHHHHHhhhcc-------cchHHHHHHHHHHHHhcCchh
Confidence 99999999999984 5556664 678999999999999999864
No 6
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.90 E-value=3.1e-23 Score=171.25 Aligned_cols=131 Identities=31% Similarity=0.650 Sum_probs=106.6
Q ss_pred eeeeEEEEEEcCccccccCCCCCeeecCceeecC---eEEEEEEecCCCCCCCCCCeEEEEEEeeC-CCceEEEEEEEEE
Q 015877 32 TVNGSHQFKITGYSLSKGLGIGKYIASDTFMVGG---YAWAIYFYPDGKSVEDNAAYVSLFIALAS-EGTDVRALFELTL 107 (399)
Q Consensus 32 ~~~~~~~w~I~nfs~~~~~~~g~~~~S~~f~~gg---~~W~l~~~p~g~~~~~~~~~lsl~l~~~~-~~w~~~a~~~~~l 107 (399)
+.+.+|.|+|+|||.+++ +.|+++.|++|.+|| ++|+|++||+|...+ +.+|+|+||.+.. ..+++.|+|+++|
T Consensus 2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~-~~~~iSlyL~l~~~~~~~v~a~f~~~l 79 (139)
T cd03774 2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEE-SKDYLSLYLLLVSCPKSEVRAKFKFSI 79 (139)
T ss_pred ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEEEEeCCCCCCC-CCCeEEEEEEEccCCCCcEEEEEEEEE
Confidence 467899999999999876 568899999999999 499999999998643 6789999999876 4578999999999
Q ss_pred eeCCCCccceeeeccccceecCCeeeeccCccccceeeeecccc--cccccccCCeEEEEEEeeeec
Q 015877 108 LDQSGKERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRTLL--EQSDYLKGDCLSVHCSVGVVK 172 (399)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L--~~~~~l~~d~l~i~~~i~v~~ 172 (399)
+|+.+....... ....+.|. ....|||..|+++++| +.++|+.||+|+|+|+|.|+.
T Consensus 80 ~n~~~~~~~~~~-------~~~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 80 LNAKGEETKAME-------SQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EecCCCeeeeec-------ccCcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 999876432110 11124453 3578999999999999 457899999999999999864
No 7
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.90 E-value=4.9e-23 Score=169.66 Aligned_cols=131 Identities=27% Similarity=0.400 Sum_probs=103.2
Q ss_pred eEEEEEEcCcccccc-CCCCC--eeecCce--eecCeEEEEEEecCCCCCCCCCCeEEEEEEeeCC------CceEEEEE
Q 015877 35 GSHQFKITGYSLSKG-LGIGK--YIASDTF--MVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRALF 103 (399)
Q Consensus 35 ~~~~w~I~nfs~~~~-~~~g~--~~~S~~f--~~gg~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~------~w~~~a~~ 103 (399)
|++.|+|.+|+.+++ +..|+ ++.|++| .++||+|+|++||||.+.+ .++|+|+||.++++ .|++.+++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~-~~~~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSG-KGTHLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCC-CCCEEEEEEEEecCccccccCcceEEEE
Confidence 579999999999975 56777 8999999 8999999999999998743 78899999999886 69999999
Q ss_pred EEEEeeCCCCccceeeeccccceecCCeeeec----cCccccceeeeeccccccc--ccccCCeEEEEEEee
Q 015877 104 ELTLLDQSGKERHKVHSHFGRTLESGPYTLKY----RGSMWGYKRFFKRTLLEQS--DYLKGDCLSVHCSVG 169 (399)
Q Consensus 104 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~----~~~~~G~~~fi~~~~L~~~--~~l~~d~l~i~~~i~ 169 (399)
+|+|+||++.+.+..... ... .....|.. ++..||++.|+++++|+.+ +|+.||+++|+|.|.
T Consensus 80 tfsLlDq~~~~~~~~~~~-~~~--~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~ 148 (148)
T cd03780 80 TLMLLDQSGKKNHIMETF-KAD--PNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD 148 (148)
T ss_pred EEEEECCCCCCCCcceee-ecC--CccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence 999999987654311111 000 00122321 1346999999999999865 999999999999873
No 8
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.89 E-value=8.6e-23 Score=174.20 Aligned_cols=134 Identities=26% Similarity=0.391 Sum_probs=105.0
Q ss_pred eeeEEEEEEcCcccccc-CCCCC--eeecCceeec--CeEEEEEEecCCCCCCCCCCeEEEEEEeeCC------CceEEE
Q 015877 33 VNGSHQFKITGYSLSKG-LGIGK--YIASDTFMVG--GYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRA 101 (399)
Q Consensus 33 ~~~~~~w~I~nfs~~~~-~~~g~--~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~------~w~~~a 101 (399)
..|+|.|+|.|||.+++ ...|+ ++.|++|++| ||+|+|++||||.+.+ .++|+|+||.++++ .|++.+
T Consensus 37 ~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~-~~~~iSvyl~L~~ge~D~~L~WP~~~ 115 (186)
T cd03777 37 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG-KGTHLSLFFVIMRGEYDALLPWPFKQ 115 (186)
T ss_pred cceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCC-CCCEEEEEEEEecCCcccccCCceeE
Confidence 46999999999999874 45666 8999999999 9999999999998743 78899999999875 599999
Q ss_pred EEEEEEeeCCCCccceeeeccccceecCCeeee-cc---CccccceeeeecccccccccccCCeEEEEEEeee
Q 015877 102 LFELTLLDQSGKERHKVHSHFGRTLESGPYTLK-YR---GSMWGYKRFFKRTLLEQSDYLKGDCLSVHCSVGV 170 (399)
Q Consensus 102 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~-~~---~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~i~v 170 (399)
+++|+|+||++...+... .+...-. ...|. +. +..||++.|++++.|+.++|++||++.|+|.|..
T Consensus 116 ~~tfsLlDQ~~~~~~~~~-~~~p~p~--~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 116 KVTLMLMDQGSSRRHLGD-AFKPDPN--SSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEEEcCCCccccccc-eeccCCc--cccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEec
Confidence 999999999864332110 1100000 01232 12 4469999999999999899999999999998863
No 9
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.89 E-value=6.3e-23 Score=171.68 Aligned_cols=132 Identities=23% Similarity=0.348 Sum_probs=102.5
Q ss_pred eEEEEEEcCccccccC--C-CCCeeecCceeec--CeEEEEEEecCCCCCCCCCCeEEEEEEeeCC------CceEEEEE
Q 015877 35 GSHQFKITGYSLSKGL--G-IGKYIASDTFMVG--GYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRALF 103 (399)
Q Consensus 35 ~~~~w~I~nfs~~~~~--~-~g~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~------~w~~~a~~ 103 (399)
|+|.|+|.+||.++++ + .|+++.|++|.+| ||+|+|++||||...+ ..+|+|+||.++++ .|++.+++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~-~~~~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSG-EGSHLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCC-CCCEEEEEEEEecCCcccccCCceeeEE
Confidence 5899999999999863 3 5789999999999 9999999999998743 67899999999874 69999999
Q ss_pred EEEEeeCCCCc--c-ceeeeccccceecCCeeee--------ccCccccceeeeecccccccccccCCeEEEEEEee
Q 015877 104 ELTLLDQSGKE--R-HKVHSHFGRTLESGPYTLK--------YRGSMWGYKRFFKRTLLEQSDYLKGDCLSVHCSVG 169 (399)
Q Consensus 104 ~~~ll~~~~~~--~-~~~~~~~~~~~~~~~~~f~--------~~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~i~ 169 (399)
+++|+|+.+.. . ..+...+... .....|. ..+..||+..|+++++|+.++||.||+++|+|+|.
T Consensus 80 ~~~llDq~~~~~~~~~~~~~~~~~~--~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKPQHITETFTPD--PTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccCcceEEEEEcC--CchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEeC
Confidence 99999998641 1 1110111000 0012222 23456999999999999989999999999999984
No 10
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.89 E-value=2.9e-22 Score=164.95 Aligned_cols=126 Identities=14% Similarity=0.281 Sum_probs=101.5
Q ss_pred eeEEEEEEcCccccccCCCCCeeecCceeecCeEEEEEEecCCCCCC-CCCCeEEEEEEeeC----CCceEEEEEEEEEe
Q 015877 34 NGSHQFKITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVE-DNAAYVSLFIALAS----EGTDVRALFELTLL 108 (399)
Q Consensus 34 ~~~~~w~I~nfs~~~~~~~g~~~~S~~f~~gg~~W~l~~~p~g~~~~-~~~~~lsl~l~~~~----~~w~~~a~~~~~ll 108 (399)
.++|+|+|.|||.+ ++.+.|+.|.+||++|+|++||+|.... ...+|+|+||.|.. ..|++.|+|+++|+
T Consensus 2 ~~~~~~~I~~~S~l-----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~ 76 (137)
T cd03772 2 EATFSFTVERFSRL-----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRII 76 (137)
T ss_pred CcEEEEEECCcccC-----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEE
Confidence 47899999999998 4689999999999999999999996532 24589999999965 24899999999999
Q ss_pred eCCCCccceeeeccccceecCCeeeeccCccccceeeeeccccc--ccccccCCeEEEEEEeeeec
Q 015877 109 DQSGKERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRTLLE--QSDYLKGDCLSVHCSVGVVK 172 (399)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~--~~~~l~~d~l~i~~~i~v~~ 172 (399)
|+++...... + ...+.|......|||++|++|++|. .++||.||+++|+|+|.+..
T Consensus 77 ~~~~~~~~~~-----~---~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 77 NYKDDEPSFS-----R---RISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred cCCCCcccEE-----E---eeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 9985332111 0 1113565556789999999999993 68999999999999998864
No 11
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.88 E-value=1.3e-22 Score=169.83 Aligned_cols=131 Identities=27% Similarity=0.398 Sum_probs=100.8
Q ss_pred eEEEEEEcCcccccc---CCCCCeeecCceeec--CeEEEEEEecCCCCCCCCCCeEEEEEEeeCC------CceEEEEE
Q 015877 35 GSHQFKITGYSLSKG---LGIGKYIASDTFMVG--GYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRALF 103 (399)
Q Consensus 35 ~~~~w~I~nfs~~~~---~~~g~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~------~w~~~a~~ 103 (399)
|+|+|+|+|||.+++ .+.++++.|+.|.+| ||+|+|++||+|...+ .++|+|+||.+.++ .|++.|+|
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~-~~~~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTG-KGTHLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCC-CCCEEEEEEEEeccCCCccccCCccceE
Confidence 579999999999876 246789999999999 9999999999997633 56899999998653 49999999
Q ss_pred EEEEeeCCCCccceeeeccccceecC--Ceeee-----ccCccccceeeeecccccccccccCCeEEEEEEee
Q 015877 104 ELTLLDQSGKERHKVHSHFGRTLESG--PYTLK-----YRGSMWGYKRFFKRTLLEQSDYLKGDCLSVHCSVG 169 (399)
Q Consensus 104 ~~~ll~~~~~~~~~~~~~~~~~~~~~--~~~f~-----~~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~i~ 169 (399)
+++|+|+.+....+.. ...+... ...|. .+..+|||.+|+++++|++.+|+.||+|+|+|+|.
T Consensus 80 ~~~l~d~~~~~~~~~~---~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 80 TLTLLDQSDDSKRKHI---TETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEEECCCCccccCce---EEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEEC
Confidence 9999999874110100 0011000 01121 14568999999999999878999999999999984
No 12
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.88 E-value=1e-22 Score=169.50 Aligned_cols=131 Identities=24% Similarity=0.304 Sum_probs=100.3
Q ss_pred eEEEEEEcCcccccc-CCCCCe--eecCceee--cCeEEEEEEecCCCCCCCCCCeEEEEEEeeCC------CceEEEEE
Q 015877 35 GSHQFKITGYSLSKG-LGIGKY--IASDTFMV--GGYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRALF 103 (399)
Q Consensus 35 ~~~~w~I~nfs~~~~-~~~g~~--~~S~~f~~--gg~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~------~w~~~a~~ 103 (399)
|.|.|+|.|||.+++ ++.|+. +.|++|.+ |||+|+|++||+|... +..+|+|+||.+.++ +|++.|++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~-~~~~~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEA-RCPNYISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCC-CCCCEEEEEEEEeccCCCcccCCccccee
Confidence 579999999997654 667775 88999985 7999999999999874 367899999999763 48999999
Q ss_pred EEEEeeCCCCccceeeeccccceecCCeeee-----ccCccccceeeeecccccccccccCCeEEEEEEee
Q 015877 104 ELTLLDQSGKERHKVHSHFGRTLESGPYTLK-----YRGSMWGYKRFFKRTLLEQSDYLKGDCLSVHCSVG 169 (399)
Q Consensus 104 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~-----~~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~i~ 169 (399)
+++|+||.+...+.... +... .....|. ..+..|||..|+++++|+.++||.||+|+|+|+|.
T Consensus 80 ~~~lldq~~~~~~~~~~-~~~~--~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIHET-MMSK--PELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccEEE-EEcC--CChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 99999998743321100 0000 0011232 12457999999999999888999999999999984
No 13
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.88 E-value=3.3e-22 Score=163.79 Aligned_cols=130 Identities=24% Similarity=0.374 Sum_probs=99.8
Q ss_pred eEEEEEEcCccccccCC---CCCeeecCceeec--CeEEEEEEecCCCCCCCCCCeEEEEEEeeCC------CceEEEEE
Q 015877 35 GSHQFKITGYSLSKGLG---IGKYIASDTFMVG--GYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRALF 103 (399)
Q Consensus 35 ~~~~w~I~nfs~~~~~~---~g~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~------~w~~~a~~ 103 (399)
|++.|+|.||++..+.+ ....+.||+|+.+ ||+|+|++||||.+.+ .++|+|+||.++++ .|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~-~~~~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAG-KGTHISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCC-CCCEEEEEEEEecCCcccccCcceEEEE
Confidence 57999999998665432 2347999999975 9999999999998743 68899999999875 59999999
Q ss_pred EEEEeeCCCCccceeeeccccceecCCeeee----ccCccccceeeeeccccccc--ccccCCeEEEEEEee
Q 015877 104 ELTLLDQSGKERHKVHSHFGRTLESGPYTLK----YRGSMWGYKRFFKRTLLEQS--DYLKGDCLSVHCSVG 169 (399)
Q Consensus 104 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~----~~~~~~G~~~fi~~~~L~~~--~~l~~d~l~i~~~i~ 169 (399)
+|+|+||.+.+... .. +.... ....|. ..+..||++.|+++++|+.+ +|+.||+++|+|+|.
T Consensus 80 tfsLlDq~~~~~~~-~~-~~~~~--~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 80 TFMLLDQNNREHVI-DA-FRPDL--SSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEEECCCCCCCCc-Ee-ecCCc--ccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 99999998644321 11 11100 012342 23447999999999999876 999999999999984
No 14
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.88 E-value=5.9e-22 Score=165.25 Aligned_cols=132 Identities=26% Similarity=0.445 Sum_probs=101.4
Q ss_pred eeEEEEEEcCccccc-cCCCCCeeecCce-eecCeEEEEEEecCCCCCCCCCCeEEEEEEeeCC------Cce-EEEEEE
Q 015877 34 NGSHQFKITGYSLSK-GLGIGKYIASDTF-MVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTD-VRALFE 104 (399)
Q Consensus 34 ~~~~~w~I~nfs~~~-~~~~g~~~~S~~f-~~gg~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~------~w~-~~a~~~ 104 (399)
+.+|+|+|.|||+++ +++.|+++.|++| .+|||+|+|++||||... .++|+|+||+++++ +|+ +.++++
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~--~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t 78 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES--YPGYTGLYFHLCSGENDDVLEWPCPNRQAT 78 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC--CCCcceEEEEEecCCccccccCcceeEEEE
Confidence 357999999999996 6778999999999 899999999999999874 67899999999764 388 589999
Q ss_pred EEEeeCCCCccceeeeccccceecCC---------------ee----ee-------ccCccccceeeeeccccccccccc
Q 015877 105 LTLLDQSGKERHKVHSHFGRTLESGP---------------YT----LK-------YRGSMWGYKRFFKRTLLEQSDYLK 158 (399)
Q Consensus 105 ~~ll~~~~~~~~~~~~~~~~~~~~~~---------------~~----f~-------~~~~~~G~~~fi~~~~L~~~~~l~ 158 (399)
++|+||..+...+++.+ +++...+ .+ .. .++.+|||+.|++.++|+..+|++
T Consensus 79 ~~LlDQ~~~~~~r~~~~--~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk 156 (167)
T cd03771 79 MTLLDQDPDIQQRMSNQ--RSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLK 156 (167)
T ss_pred EEEECCCCcccccCcce--EEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCc
Confidence 99999974222211111 1111111 00 11 144589999999999998888999
Q ss_pred CCeEEEEEEee
Q 015877 159 GDCLSVHCSVG 169 (399)
Q Consensus 159 ~d~l~i~~~i~ 169 (399)
||+|.|+++++
T Consensus 157 ~dtl~i~~~~~ 167 (167)
T cd03771 157 GDDLIILLDFE 167 (167)
T ss_pred CCEEEEEEEeC
Confidence 99999998874
No 15
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.88 E-value=9.6e-22 Score=182.36 Aligned_cols=190 Identities=23% Similarity=0.311 Sum_probs=169.1
Q ss_pred cccCCCCchhHhHHHhhhcCCcceEEEEEcC-----eEEehhhHHHHhcCHHHHHhhcCCCCCCCcceEEeeCCCHHHHH
Q 015877 182 SIAIPPSNIGQHFGQLLESGKRTDVNFEVNG-----ETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFK 256 (399)
Q Consensus 182 ~~~~p~~~l~~~l~~l~~~~~~sDv~~~v~~-----~~~~aHk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~ 256 (399)
..+.+.+.+......+++++..+|+.|+|++ +.++|||.|||..|.+|.+||+|++.+....+|.++|+.+.+|.
T Consensus 93 nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl 172 (521)
T KOG2075|consen 93 NWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFL 172 (521)
T ss_pred ccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhH
Confidence 3455567777888889999999999999974 68999999999999999999999999987889999999999999
Q ss_pred HHhhhhccCCCCCchhhccCCcccchHHHHHHHHHHhhhcChHHHHHHHHHHHhccCChhHHHHHHHH-HHHcCchHHHH
Q 015877 257 ALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLAL-AEQHHCFQLKS 335 (399)
Q Consensus 257 ~~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~~~~~n~~~~l~~-A~~~~~~~L~~ 335 (399)
.+|+|||++.+. +..++++.+|.+|++|.++.|.+.|.++|...+...|....|-- |..++-+.|.+
T Consensus 173 ~~L~flYsdev~------------~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~ 240 (521)
T KOG2075|consen 173 AFLRFLYSDEVK------------LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLIS 240 (521)
T ss_pred HHHHHHhcchhh------------hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHH
Confidence 999999999887 78899999999999999999999999999988877776655544 99999999999
Q ss_pred HHHHhccCcCcHHHHhcccchHHHH-------HHhhhchhhHhHhhhHHHhhHHHHHhcCcccc
Q 015877 336 VCLKFVAMPENLRGGYSIDSIHIQQ-------IYIVSNNFVITLCFLVWKEKKLFYELCRPIKC 392 (399)
Q Consensus 336 ~~~~~i~~~~~~~~v~~~~~f~~L~-------~~l~~~~l~~~~~~~~~~E~~v~~~~~~Wi~~ 392 (399)
.|++.|. .+++..+..++|.+.. +.|.++.| -.+|..+|+++++|+..
T Consensus 241 ~c~e~id--~~~~~al~~EGf~did~~~dt~~evl~r~~l-------~~~e~~lfeA~lkw~~~ 295 (521)
T KOG2075|consen 241 ICLEVID--KSFEDALTPEGFCDIDSTRDTYEEVLRRDTL-------EAREFRLFEAALKWAEA 295 (521)
T ss_pred HHHHHhh--hHHHhhhCccceeehhhHHHHHHHHHhhccc-------chhHHHHHHHHHhhccC
Confidence 9999999 9999999999887665 57778887 34599999999999964
No 16
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.87 E-value=1.1e-21 Score=160.74 Aligned_cols=124 Identities=27% Similarity=0.511 Sum_probs=99.2
Q ss_pred eeEEEEEEcCccccccCCCCCeeecCceeecCeEEEEEEecCCCCCCCCCCeEEEEEEeeCC-CceEEEEEEEEEeeCCC
Q 015877 34 NGSHQFKITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE-GTDVRALFELTLLDQSG 112 (399)
Q Consensus 34 ~~~~~w~I~nfs~~~~~~~g~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~-~w~~~a~~~~~ll~~~~ 112 (399)
.++++|+|+|||.+++ .|+++.|++|.+||++|+|.+||+|+.. +.++|+|+||.+... .|.+.++|+++|+|+.+
T Consensus 4 ~~~~~~~I~~fS~~~~--~~~~~~S~~F~vgG~~W~i~~yP~G~~~-~~~~~lSl~L~l~~~~~~~~~~~~~l~llnq~~ 80 (132)
T cd03773 4 YDSATFTLENFSTLRQ--SADPVYSDPLNVDGLCWRLKVYPDGNGE-VRGNFLSVFLELCSGLGEASKYEYRVEMVHQAN 80 (132)
T ss_pred CcccEEEECChhhhhc--CCcceeCCCeEeCCccEEEEEECCCCCC-CCCCEEEEEEEeecCCCCceeEEEEEEEEcCCC
Confidence 4679999999999864 5789999999999999999999999763 367899999998764 57889999999999853
Q ss_pred CccceeeeccccceecCCeeeeccCccccceeeeecccccccccccC--CeEEEEEEee
Q 015877 113 KERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRTLLEQSDYLKG--DCLSVHCSVG 169 (399)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~l~~--d~l~i~~~i~ 169 (399)
...+.. .. ..+.|. .+..|||..|+++++|+++|||.| |+|+|+|.|.
T Consensus 81 ~~~~~~-~~-------~~~~f~-~~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 81 PTKNIK-RE-------FASDFE-VGECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred CccceE-Ee-------cccccc-CCCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 222111 11 112343 246799999999999987899999 9999999985
No 17
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.87 E-value=1.8e-21 Score=159.44 Aligned_cols=117 Identities=25% Similarity=0.461 Sum_probs=95.8
Q ss_pred EEEEEEcCccccccCCCCCeeecCceeecCeEEEEEEecCCCCCCCCCCeEEEEEEeeC---------CCceEEEEEEEE
Q 015877 36 SHQFKITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALAS---------EGTDVRALFELT 106 (399)
Q Consensus 36 ~~~w~I~nfs~~~~~~~g~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~l~~~~---------~~w~~~a~~~~~ 106 (399)
+|+|+|+|||.+ ++.+.|++|.+||++|+|.+||+|+. ..+|+|+||.+.+ .+|.+.|+|+++
T Consensus 2 ~f~w~I~~fS~~-----~~~~~S~~F~vGG~~W~l~~yP~G~~---~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~ 73 (134)
T cd03775 2 SFTWRIKNWSEL-----EKKVHSPKFKCGGFEWRILLFPQGNS---QTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALV 73 (134)
T ss_pred cEEEEECCcccC-----CcceeCCCEEECCeeEEEEEeCCCCC---CCCeEEEEEEecCcccccccCCCCCeEEEEEEEE
Confidence 589999999995 46899999999999999999999975 3789999998853 358899999999
Q ss_pred EeeCCCCccceeeeccccceecCCeeeeccCccccceeeeeccccc------ccccccCCeEEEEEEe
Q 015877 107 LLDQSGKERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRTLLE------QSDYLKGDCLSVHCSV 168 (399)
Q Consensus 107 ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~------~~~~l~~d~l~i~~~i 168 (399)
|+|+.+...... ....+.|......|||.+|+++++|+ ++|||+||+|+|++.|
T Consensus 74 l~n~~~~~~~~~--------~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~ 133 (134)
T cd03775 74 ISNPGDPSIQLS--------NVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYV 133 (134)
T ss_pred EEcCCCCccceE--------ccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEE
Confidence 999964332111 11235666566789999999999996 4799999999999987
No 18
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.80 E-value=1.1e-19 Score=144.11 Aligned_cols=107 Identities=33% Similarity=0.538 Sum_probs=94.6
Q ss_pred HHHhhhcCCcceEEEEEc-CeEEehhhHHHHhcCHHHHHhhcCC-CCCCCcceEEeeCCCHHHHHHHhhhhccCCCCCch
Q 015877 194 FGQLLESGKRTDVNFEVN-GETFAAHKLVLAARSPVFRAQLYGP-MKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDME 271 (399)
Q Consensus 194 l~~l~~~~~~sDv~~~v~-~~~~~aHk~iLa~~S~~F~~~~~~~-~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~ 271 (399)
|+++++++.++|++|.++ +++|+|||.||+++|+||+.||.+. +.+....+|.++++++++|..+|+|+|++.+.
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~--- 77 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIE--- 77 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEE---
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCccc---
Confidence 467889999999999999 8999999999999999999999987 56666668999999999999999999999987
Q ss_pred hhccCCcccch-HHHHHHHHHHhhhcChHHHHHHHHHHHhcc
Q 015877 272 ELTGMSSKWAS-TLMSQHLLAAADRYGLERLRLLCEANLCED 312 (399)
Q Consensus 272 ~~~~~~~~~~~-~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 312 (399)
+. .+++.+++.+|++|+++.|+..|+++|.++
T Consensus 78 ---------~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 78 ---------INSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp ---------EE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 55 778999999999999999999999999753
No 19
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.80 E-value=6.4e-19 Score=145.81 Aligned_cols=134 Identities=21% Similarity=0.320 Sum_probs=99.4
Q ss_pred eeeEEEEEEcCccccccCC---CCCeeecCceee--cCeEEEEEEecCCCCCCCCCCeEEEEEEeeCC------CceEEE
Q 015877 33 VNGSHQFKITGYSLSKGLG---IGKYIASDTFMV--GGYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRA 101 (399)
Q Consensus 33 ~~~~~~w~I~nfs~~~~~~---~g~~~~S~~f~~--gg~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~------~w~~~a 101 (399)
..|++.|+|.||+...+.+ ....+.||+|+. +||+|+|++||||++. +.+.|+|+|++++++ .|++..
T Consensus 17 ~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~-~~g~~LSly~~l~~Ge~D~~L~WPf~~ 95 (164)
T cd03778 17 YDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGT-GRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (164)
T ss_pred cCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCC-CCCCEEEEEEEEecCCcCcccCCceee
Confidence 4699999999999876532 334899999985 5899999999999874 367899999999874 399999
Q ss_pred EEEEEEeeCCCCccceeeeccccceecCCe-ee-eccCccccceeeeecccccc-cccccCCeEEEEEEee
Q 015877 102 LFELTLLDQSGKERHKVHSHFGRTLESGPY-TL-KYRGSMWGYKRFFKRTLLEQ-SDYLKGDCLSVHCSVG 169 (399)
Q Consensus 102 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~f-~~~~~~~G~~~fi~~~~L~~-~~~l~~d~l~i~~~i~ 169 (399)
+++++|+||++.. +.. ..+.+..+...+ +. ..+...||++.|++.++|.. .+|++||++.|+|.|.
T Consensus 96 ~itl~llDQ~~r~-hi~-~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~Vd 164 (164)
T cd03778 96 KVTLMLLDQNNRE-HVI-DAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIVD 164 (164)
T ss_pred EEEEEEECCCCCC-cce-eEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEEC
Confidence 9999999997522 211 111111110001 11 22344699999999999965 7999999999999873
No 20
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.80 E-value=1.2e-19 Score=164.59 Aligned_cols=177 Identities=21% Similarity=0.273 Sum_probs=161.6
Q ss_pred HHHhhhcCCcceEEEEEcCeEEehhhHHHHhcCHHHHHhhcCCCCCCCcceEEee----CCCHHHHHHHhhhhccCCCCC
Q 015877 194 FGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVE----DMEAPVFKALLHFIYWDSLPD 269 (399)
Q Consensus 194 l~~l~~~~~~sDv~~~v~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~----~~~~~~f~~~L~~iYt~~~~~ 269 (399)
+..|+.+++.+||.+.+-|++++.||.-|. +|+||.+||.|.+.|+++..|.++ .++..+|..++.-+|.+++.
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve- 137 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE- 137 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-
Confidence 567888999999999999999999999997 899999999999999999877764 78999999999999999998
Q ss_pred chhhccCCcccchHHHHHHHHHHhhhcChHHHHHHHHHHHhccCChhHHHHHHHHHHHcCchHHHHHHHHhccCcCcHHH
Q 015877 270 MEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRG 349 (399)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~ 349 (399)
+..+.+..++++|..++++.|.+.|.+.+++.+++++++..++.|.+|++..+++.|++++. .|+-.
T Consensus 138 -----------I~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~--~nl~~ 204 (488)
T KOG4682|consen 138 -----------IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLL--NNLMT 204 (488)
T ss_pred -----------ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHH--HhhHh
Confidence 88999999999999999999999999999999999999999999999999999999999999 99988
Q ss_pred HhcccchHHHH-----HHhhhchhhHhHhhhHHHhhHHHHHhcCcc
Q 015877 350 GYSIDSIHIQQ-----IYIVSNNFVITLCFLVWKEKKLFYELCRPI 390 (399)
Q Consensus 350 v~~~~~f~~L~-----~~l~~~~l~~~~~~~~~~E~~v~~~~~~Wi 390 (399)
+....-+.+++ +++.+.+| +.+..|-.+|..+..||
T Consensus 205 i~~~q~l~ei~~~Lm~~ll~SpnL-----fvmq~EfdLyttlk~Wm 245 (488)
T KOG4682|consen 205 IQNVQLLKEISINLMKQLLGSPNL-----FVMQVEFDLYTTLKKWM 245 (488)
T ss_pred hhhHHHHHhcCHHHHHHHhCCCCe-----EEEEeeehHHHHHHHHH
Confidence 88877777766 46666666 34555999999999998
No 21
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.80 E-value=2.7e-19 Score=147.61 Aligned_cols=160 Identities=24% Similarity=0.335 Sum_probs=135.7
Q ss_pred CchhHhHHHhhhcCCcceEEEEEcC---eEEehhhHHHHhcCHHHHHhhcCCCCCCCcceEEeeCCCHHHHHHHhhhhcc
Q 015877 188 SNIGQHFGQLLESGKRTDVNFEVNG---ETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYW 264 (399)
Q Consensus 188 ~~l~~~l~~l~~~~~~sDv~~~v~~---~~~~aHk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt 264 (399)
+.+..-...+++.+.++|++|.++| +.++|||.|||+||.+..-.- |+ ...+.+..++|.++++|..+++||||
T Consensus 51 SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN-~~--dekse~~~~dDad~Ea~~t~iRWIYT 127 (280)
T KOG4591|consen 51 SRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFAN-GG--DEKSEELDLDDADFEAFHTAIRWIYT 127 (280)
T ss_pred HHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhcc-CC--CcchhhhcccccCHHHHHHhheeeec
Confidence 5666777789999999999999984 679999999999999875322 21 22244678899999999999999999
Q ss_pred CCCCCchhhccCCcccchHHHHHHHHHHhhhcChHHHHHHHHHHHhccCChhHHHHHHHHHHHcCchHHHHHHHHhccCc
Q 015877 265 DSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMP 344 (399)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~ 344 (399)
+++... .....+..+.++|.+|+++-|+..|+.-+...+..+||+.++++|++.++..|...|.+.|+
T Consensus 128 DEidfk----------~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA-- 195 (280)
T KOG4591|consen 128 DEIDFK----------EDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIA-- 195 (280)
T ss_pred cccccc----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHH--
Confidence 998632 45678899999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHhcccchHHHHHHh
Q 015877 345 ENLRGGYSIDSIHIQQIYI 363 (399)
Q Consensus 345 ~~~~~v~~~~~f~~L~~~l 363 (399)
.++..+ ....|.+++..|
T Consensus 196 ~~W~dL-~~a~FaqMs~aL 213 (280)
T KOG4591|consen 196 GAWDDL-GKADFAQMSAAL 213 (280)
T ss_pred hhcccc-ChHHHHhccHHH
Confidence 887665 445787777533
No 22
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.79 E-value=1.9e-18 Score=139.87 Aligned_cols=120 Identities=36% Similarity=0.621 Sum_probs=96.1
Q ss_pred eEEEEEEcCccccccCCCCCeeecCceeecCeEEEEEEecCCCCCCCCCCeEEEEEEeeCC-----CceEEEEEEEEEee
Q 015877 35 GSHQFKITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE-----GTDVRALFELTLLD 109 (399)
Q Consensus 35 ~~~~w~I~nfs~~~~~~~g~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~-----~w~~~a~~~~~ll~ 109 (399)
++|+|+|.+|+. ..++.+.|+.|.++|+.|+|.+||+|... +.+|+|+||.|... .|++.+++++.|++
T Consensus 1 ~~~~~~i~~~~~----~~~~~~~S~~f~~~g~~W~l~~~p~~~~~--~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~ 74 (126)
T cd00121 1 GKHTWKIVNFSE----LEGESIYSPPFEVGGYKWRIRIYPNGDGE--SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVN 74 (126)
T ss_pred CEEEEEECCCCC----CCCcEEECCCEEEcCEeEEEEEEcCCCCC--CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEEC
Confidence 469999999998 23789999999999999999999999753 57899999999764 49999999999999
Q ss_pred CCCCccceeeeccccceecCCeee-eccCccccceeeeecccccccccccCCeEEEEEEee
Q 015877 110 QSGKERHKVHSHFGRTLESGPYTL-KYRGSMWGYKRFFKRTLLEQSDYLKGDCLSVHCSVG 169 (399)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~i~ 169 (399)
+++.+....... ..+ .....+|||.+|++|++|.+..++.||+|+|+|+|.
T Consensus 75 ~~~~~~~~~~~~---------~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 75 QNGGKSLSKSFT---------HVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCccceEecc---------CCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 984332111110 111 234678999999999999866558999999999983
No 23
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.72 E-value=5e-17 Score=130.45 Aligned_cols=113 Identities=29% Similarity=0.543 Sum_probs=91.0
Q ss_pred EcCccccccCCCCCeeecCceeecCeEEEEEEecCCCCCCCCCCeEEEEEEeeCC------CceEEEEEEEEEeeCCCCc
Q 015877 41 ITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRALFELTLLDQSGKE 114 (399)
Q Consensus 41 I~nfs~~~~~~~g~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~------~w~~~a~~~~~ll~~~~~~ 114 (399)
|.|||.++ ..+.++.|+.|.++|++|+|.+||+|+ ++|+++||.|... .|++.+++++.++++.+..
T Consensus 1 i~nfs~l~--~~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 73 (119)
T PF00917_consen 1 IKNFSKLK--EGEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS 73 (119)
T ss_dssp ETTGGGHH--TSEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE
T ss_pred CcccceEe--CCCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc
Confidence 78999998 234456669999999999999999985 5899999999764 7999999999999998876
Q ss_pred cceeeeccccceecCCeeeeccCccccceeeeecccccccccccCCeEEEEEEeee
Q 015877 115 RHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRTLLEQSDYLKGDCLSVHCSVGV 170 (399)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~i~v 170 (399)
..+.. . .+.|. ....|||.+|++|++|.+..|+.||+++|+|+|.|
T Consensus 74 ~~~~~-------~--~~~F~-~~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 74 ISKRI-------K--SHSFN-NPSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEEE-------E--CEEEC-TTSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred ceeee-------e--eeEEe-eecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 32111 1 23453 34789999999999997666899999999999976
No 24
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.71 E-value=5.1e-17 Score=133.74 Aligned_cols=133 Identities=21% Similarity=0.385 Sum_probs=99.5
Q ss_pred eEEEEEEcCccccccCC-CCCeeecCceeec-CeEEEEEEecCCCCCCCCCCeEEEEEEeeCCC------ceE-EEEEEE
Q 015877 35 GSHQFKITGYSLSKGLG-IGKYIASDTFMVG-GYAWAIYFYPDGKSVEDNAAYVSLFIALASEG------TDV-RALFEL 105 (399)
Q Consensus 35 ~~~~w~I~nfs~~~~~~-~g~~~~S~~f~~g-g~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~~------w~~-~a~~~~ 105 (399)
..++|+|.||++..+.+ .+..+.||+|+.+ ||+.+|++|++|+...+.+.|+|+|+++++++ |++ .-++++
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl 81 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII 81 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence 46899999998876533 5778999999875 99999999999986444678999999999853 995 569999
Q ss_pred EEeeCCCCccceeeeccccceecCC----------eee--------------eccCccccceeeeecccccccccccCCe
Q 015877 106 TLLDQSGKERHKVHSHFGRTLESGP----------YTL--------------KYRGSMWGYKRFFKRTLLEQSDYLKGDC 161 (399)
Q Consensus 106 ~ll~~~~~~~~~~~~~~~~~~~~~~----------~~f--------------~~~~~~~G~~~fi~~~~L~~~~~l~~d~ 161 (399)
.|+||+.+...+++. .++++..+ ..| ..++.++||+.|++.+.|+..+|++||+
T Consensus 82 ~llDQ~~~~~~r~~~--~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDt 159 (167)
T cd03783 82 TVLDQDPDVRLRMSS--SRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDD 159 (167)
T ss_pred EEEcCCcchhhcccc--ceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCe
Confidence 999997532221111 01111110 001 1245689999999999998899999999
Q ss_pred EEEEEEee
Q 015877 162 LSVHCSVG 169 (399)
Q Consensus 162 l~i~~~i~ 169 (399)
+.|.++++
T Consensus 160 lfI~~~~~ 167 (167)
T cd03783 160 LIIFVDFE 167 (167)
T ss_pred EEEEEecC
Confidence 99988763
No 25
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.69 E-value=1.2e-16 Score=120.95 Aligned_cols=90 Identities=39% Similarity=0.564 Sum_probs=83.7
Q ss_pred eEEEEEcCeEEehhhHHHHhcCHHHHHhhcCCCCCCCcceEEeeCCCHHHHHHHhhhhccCCCCCchhhccCCcccchHH
Q 015877 205 DVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTL 284 (399)
Q Consensus 205 Dv~~~v~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~ 284 (399)
|+++.++|++|++||.+|+++|+||++||.+++.+.....+.+++.++++|+.+|+|+|++.+. +...
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~------------~~~~ 68 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLD------------LPEE 68 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceee------------cCHH
Confidence 6889999999999999999999999999998887777789999999999999999999999887 6666
Q ss_pred HHHHHHHHhhhcChHHHHHHHH
Q 015877 285 MSQHLLAAADRYGLERLRLLCE 306 (399)
Q Consensus 285 ~~~~ll~~A~~~~~~~L~~~c~ 306 (399)
++..++.+|++|+++.|+..|+
T Consensus 69 ~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 69 NVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHCcHHHHhhhC
Confidence 8999999999999999999884
No 26
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.65 E-value=8.2e-16 Score=125.79 Aligned_cols=132 Identities=22% Similarity=0.358 Sum_probs=99.3
Q ss_pred eEEEEEEcCccccccC-CCCCeeecCceee-cCeEEEEEEecCCCCCCCCCCeEEEEEEeeCCC------ceEE-EEEEE
Q 015877 35 GSHQFKITGYSLSKGL-GIGKYIASDTFMV-GGYAWAIYFYPDGKSVEDNAAYVSLFIALASEG------TDVR-ALFEL 105 (399)
Q Consensus 35 ~~~~w~I~nfs~~~~~-~~g~~~~S~~f~~-gg~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~~------w~~~-a~~~~ 105 (399)
..++|+|.||++..+. +.+..+.||+|+. .||+.++++|+||++. .+.|+|+|+++++++ |++. -++++
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~--~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~ 79 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDD--YPGNLAIYLHLTSGPNDDQLQWPCPWQQATM 79 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCC--CCCEEEEEEEEeccCCCccccCCCcCCeEEE
Confidence 4689999999987653 5678899999985 5999999999999874 367999999999853 9999 89999
Q ss_pred EEeeCCCCccceeee----ccccceecC---Ce------------e-----eeccCccccceeeeecccccccccccCCe
Q 015877 106 TLLDQSGKERHKVHS----HFGRTLESG---PY------------T-----LKYRGSMWGYKRFFKRTLLEQSDYLKGDC 161 (399)
Q Consensus 106 ~ll~~~~~~~~~~~~----~~~~~~~~~---~~------------~-----f~~~~~~~G~~~fi~~~~L~~~~~l~~d~ 161 (399)
.|+||+.+...+++. .+.+..... .+ . ..+++.++||+.|++.+.|+...|++||+
T Consensus 80 ~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD~ 159 (167)
T cd03782 80 MLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGDD 159 (167)
T ss_pred EEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCCe
Confidence 999997522221111 111111111 11 0 01236789999999999998899999999
Q ss_pred EEEEEEe
Q 015877 162 LSVHCSV 168 (399)
Q Consensus 162 l~i~~~i 168 (399)
+.|-.++
T Consensus 160 ifi~~~~ 166 (167)
T cd03782 160 VIFLLTM 166 (167)
T ss_pred EEEEEec
Confidence 9998765
No 27
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.59 E-value=5e-16 Score=152.21 Aligned_cols=149 Identities=21% Similarity=0.338 Sum_probs=123.6
Q ss_pred CCcceEEEEE-cCeEEehhhHHHHhcCHHHHHhhcCCCCCCCcceEEeeCCCHHHHHHHhhhhcc-CCCCCchhhccCCc
Q 015877 201 GKRTDVNFEV-NGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYW-DSLPDMEELTGMSS 278 (399)
Q Consensus 201 ~~~sDv~~~v-~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt-~~~~~~~~~~~~~~ 278 (399)
+..-|+.|.. +|+.++|||++|++|+.||..||..-+.|++.-.+..-.+..+.+..+|+|+|+ ++.....+
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~------ 781 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKD------ 781 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhc------
Confidence 3444666665 788899999999999999999999888888875555556669999999999995 43321111
Q ss_pred ccchHHHHHHHHHHhhhcChHHHHHHHHHHHhccCChhHHHHHHHHHHHcCchHHHHHHHHhccCcCcHHHHhcccchHH
Q 015877 279 KWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRGGYSIDSIHI 358 (399)
Q Consensus 279 ~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~~f~~ 358 (399)
.-..+.+..++.+||.|-+.+|+..||..|.+.++..++..+|++|.+|++..|+..|++||+ .|+..++......+
T Consensus 782 -~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic--~N~~~~Learsi~~ 858 (1267)
T KOG0783|consen 782 -LKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFIC--HNIEFFLEARSISE 858 (1267)
T ss_pred -cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHH--HhHHHHHHhccHhh
Confidence 134567889999999999999999999999999999999999999999999999999999999 99988776544433
No 28
>smart00061 MATH meprin and TRAF homology.
Probab=99.52 E-value=1e-13 Score=106.38 Aligned_cols=89 Identities=22% Similarity=0.362 Sum_probs=71.7
Q ss_pred EEEEEcCccccccCCCCCeeecCceeecCeEEEEEEecCCCCCCCCCCeEEEEEEeeCC-----CceEEEEEEEEEeeCC
Q 015877 37 HQFKITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE-----GTDVRALFELTLLDQS 111 (399)
Q Consensus 37 ~~w~I~nfs~~~~~~~g~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~-----~w~~~a~~~~~ll~~~ 111 (399)
++|+|+||+.+. .|+.+.|++|.+||++|+|.+||+ .+|+|+||.|.+. +|++.|+++++|+|++
T Consensus 2 ~~~~~~~~~~~~---~~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~ 71 (95)
T smart00061 2 LSHTFKNVSRLE---EGESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQN 71 (95)
T ss_pred ceeEEEchhhcc---cCceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCC
Confidence 579999999873 478999999999999999999999 3689999998653 5899999999999998
Q ss_pred CCccceeeeccccceecCCeeeeccCccccceeee
Q 015877 112 GKERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFF 146 (399)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi 146 (399)
+....+ ...++|.. ..+||+..|+
T Consensus 72 ~~~~~~----------~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 72 GKSLSK----------KDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CCEEee----------eeeEEEcC-CCccceeeEC
Confidence 754311 12245653 6789998875
No 29
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.42 E-value=9.3e-13 Score=123.09 Aligned_cols=230 Identities=27% Similarity=0.340 Sum_probs=170.6
Q ss_pred EEEcCccccccCCCCCeeecCceeecCeEEEEEEecCCCCCCCCCCeEEEEEEeeCC-CceEEEEEEEEEeeCCCCcc-c
Q 015877 39 FKITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE-GTDVRALFELTLLDQSGKER-H 116 (399)
Q Consensus 39 w~I~nfs~~~~~~~g~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~-~w~~~a~~~~~ll~~~~~~~-~ 116 (399)
|.|.+|+... ..++|..|..||..|++.+||.|+ |.+.|+..... +|.+.+.+.+.+.|+..... .
T Consensus 8 ~~~~~~~~~~-----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~v~n~~~~~~~~ 75 (297)
T KOG1987|consen 8 WVISNFSSVG-----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSPGWERYAKLRLTVVNQKSEKYLS 75 (297)
T ss_pred eeeccCcchh-----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCCCcceeEEEEEEEccCCCcceee
Confidence 8888887765 567889999999999999999984 67887765543 79999999999999876532 1
Q ss_pred eeeeccccceecCCeeeecc--CccccceeeeecccccccccccCCeEEEEEEeeeecccCCCCccccccCCCCchhHhH
Q 015877 117 KVHSHFGRTLESGPYTLKYR--GSMWGYKRFFKRTLLEQSDYLKGDCLSVHCSVGVVKSHTEGPKIYSIAIPPSNIGQHF 194 (399)
Q Consensus 117 ~~~~~~~~~~~~~~~~f~~~--~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~i~v~~~~~~~~~~~~~~~p~~~l~~~l 194 (399)
... .....|..+ ...||+..+++...+ +.|+
T Consensus 76 ~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~------------~~~~--------------------------- 108 (297)
T KOG1987|consen 76 TVE--------EGFSWFRFNKVLKEWGFGKMLPLTLL------------IDCS--------------------------- 108 (297)
T ss_pred eee--------eeEEeccccccccccCcccccChHHh------------hccc---------------------------
Confidence 000 000001000 123333222211111 1100
Q ss_pred HHhhhcCCcceEEEEEcCeEEehhhHHHHhcCHHHHHhhcCCCCCCCcceEEeeCCCHHHHHHHhhhhccCCCCCchhhc
Q 015877 195 GQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELT 274 (399)
Q Consensus 195 ~~l~~~~~~sDv~~~v~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~ 274 (399)
+..+.+|+.++++++++|+.|+..+..+.....+.+.+.+++.++.+..|+|+..-.
T Consensus 109 -----------------~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~------ 165 (297)
T KOG1987|consen 109 -----------------NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQV------ 165 (297)
T ss_pred -----------------CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccch------
Confidence 445999999999999999999988776666667788899999999999999997654
Q ss_pred cCCcccchHHHHH---HHHHHhhhcChHHHHHHHHHHHhccCChhHHHHHHHHHHHcCchHHHHHHHHhccCcCcHHHHh
Q 015877 275 GMSSKWASTLMSQ---HLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRGGY 351 (399)
Q Consensus 275 ~~~~~~~~~~~~~---~ll~~A~~~~~~~L~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~ 351 (399)
....... .++.+|++++...|+..|...+...+...++...++.+..+.+..+...|..++....+++.+.
T Consensus 166 ------~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~ 239 (297)
T KOG1987|consen 166 ------SSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLE 239 (297)
T ss_pred ------HHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHH
Confidence 2333333 7888999999999999999999999999999999999999999999999999998444777776
Q ss_pred cccch
Q 015877 352 SIDSI 356 (399)
Q Consensus 352 ~~~~f 356 (399)
...++
T Consensus 240 ~~~~~ 244 (297)
T KOG1987|consen 240 KKLNE 244 (297)
T ss_pred HHHHH
Confidence 54444
No 30
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=6.7e-11 Score=115.87 Aligned_cols=125 Identities=21% Similarity=0.398 Sum_probs=99.3
Q ss_pred eeeeEEEEEEcCccccccCCCCCeeecCceeecCeEEEEEEecCCCCCCCCCCeEEEEEEeeC--------CCceEEEEE
Q 015877 32 TVNGSHQFKITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALAS--------EGTDVRALF 103 (399)
Q Consensus 32 ~~~~~~~w~I~nfs~~~~~~~g~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~l~~~~--------~~w~~~a~~ 103 (399)
...-.+.|+|.+++.+.. ...||+|.+||++|+|.++|.|++. .+ +|+||.... ..|.|.|+|
T Consensus 36 ~~~~sftW~vk~wsel~~-----k~~Sp~F~vg~~twki~lfPqG~nq---~~-~sVyLe~~pqe~e~~~gk~~~ccaqF 106 (1089)
T COG5077 36 LLEMSFTWKVKRWSELAK-----KVESPPFSVGGHTWKIILFPQGNNQ---CN-VSVYLEYEPQELEETGGKYYDCCAQF 106 (1089)
T ss_pred HhhcccceecCChhhhhh-----hccCCcccccCeeEEEEEecccCCc---cc-cEEEEEeccchhhhhcCcchhhhhhe
Confidence 346779999999998862 5789999999999999999999873 33 999997754 238999999
Q ss_pred EEEEeeCCCCccceeeeccccceecCCeeeeccCccccceeeeeccccc-----ccccccCCeEEEEEEeeeecc
Q 015877 104 ELTLLDQSGKERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRTLLE-----QSDYLKGDCLSVHCSVGVVKS 173 (399)
Q Consensus 104 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~-----~~~~l~~d~l~i~~~i~v~~~ 173 (399)
.+.|.++...... ..+.+.|+|+....+||+.+|+....|. -..|+.+|++.|.+.|.|.+.
T Consensus 107 af~Is~p~~pti~--------~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd 173 (1089)
T COG5077 107 AFDISNPKYPTIE--------YINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173 (1089)
T ss_pred eeecCCCCCCchh--------hhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence 9999987653221 2233457888888999999999888772 134789999999999999873
No 31
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.88 E-value=1.9e-09 Score=106.84 Aligned_cols=85 Identities=38% Similarity=0.542 Sum_probs=68.1
Q ss_pred cCCCCchhHhHHHhhhcCC----cceEEEEEcCeEEehhhHHHHhcCHHHHHhhcCCCCCCC------------cceEEe
Q 015877 184 AIPPSNIGQHFGQLLESGK----RTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQN------------TQCIKV 247 (399)
Q Consensus 184 ~~p~~~l~~~l~~l~~~~~----~sDv~~~v~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~------------~~~i~l 247 (399)
.+|.+.+...|..|+.... +.||+|.||++.|+|||.||++||++|+.+|......+. ...|.+
T Consensus 535 ~~~ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~v 614 (1267)
T KOG0783|consen 535 RAASSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRV 614 (1267)
T ss_pred ccccccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeee
Confidence 3456677888888887643 578999999999999999999999999999965332221 135668
Q ss_pred eCCCHHHHHHHhhhhccCCCC
Q 015877 248 EDMEAPVFKALLHFIYWDSLP 268 (399)
Q Consensus 248 ~~~~~~~f~~~L~~iYt~~~~ 268 (399)
+++.+..|+.+|+||||+..-
T Consensus 615 e~i~p~mfe~lL~~iYtdt~~ 635 (1267)
T KOG0783|consen 615 EDIPPLMFEILLHYIYTDTLL 635 (1267)
T ss_pred ccCCHHHHHHHHHHHhccccc
Confidence 899999999999999999653
No 32
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=98.81 E-value=1.3e-09 Score=84.76 Aligned_cols=70 Identities=23% Similarity=0.282 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCchHHHHHHHHhccCcCcHHHHhcccchHHHHH-----HhhhchhhHhHhhhHHHhhHHHHHhcCcccc
Q 015877 318 VATTLALAEQHHCFQLKSVCLKFVAMPENLRGGYSIDSIHIQQI-----YIVSNNFVITLCFLVWKEKKLFYELCRPIKC 392 (399)
Q Consensus 318 ~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~~f~~L~~-----~l~~~~l~~~~~~~~~~E~~v~~~~~~Wi~~ 392 (399)
|+.++.+|..|++..|.+.|.+||. .||.++..+++|.+|+. +|.++.| ++.+|.++|+++++|+++
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~--~nf~~v~~~~~f~~L~~~~l~~iL~~~~l------~v~~E~~v~~av~~W~~~ 72 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIA--KNFNEVSKSDEFLELPFDQLIEILSSDDL------NVSSEDDVFEAVLRWLKH 72 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH--HTHHHHTTSHHHHCS-HHHHHHHHHTSS--------ECTCCCHHHHHHHHHHC
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHH--HHHHHHccchhhhcCCHHHHHHHHhcccc------ccccHHHHHHHHHHHHHh
Confidence 6789999999999999999999999 99999999999999983 6667776 789999999999999999
Q ss_pred cCC
Q 015877 393 SSI 395 (399)
Q Consensus 393 n~~ 395 (399)
|..
T Consensus 73 ~~~ 75 (103)
T PF07707_consen 73 NPE 75 (103)
T ss_dssp THH
T ss_pred CHH
Confidence 864
No 33
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=98.60 E-value=1.8e-08 Score=77.94 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCchHHHHHHHHhccCcCcHHHHhcccchHHHH-----HHhhhchhhHhHhhhHHHhhHHHHHhcCcccc
Q 015877 318 VATTLALAEQHHCFQLKSVCLKFVAMPENLRGGYSIDSIHIQQ-----IYIVSNNFVITLCFLVWKEKKLFYELCRPIKC 392 (399)
Q Consensus 318 ~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~~f~~L~-----~~l~~~~l~~~~~~~~~~E~~v~~~~~~Wi~~ 392 (399)
|+.++.+|+.|++..|.+.|.+||. .||..+.++++|..|+ .+|.++.| .+.+|.++|+++++|+++
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~--~nf~~~~~~~~f~~L~~~~l~~iL~~d~l------~v~~E~~v~~av~~W~~~ 72 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFIL--KNFLEVAQSEEFLELSLEQLLSLLSSDDL------NVPSEEEVFEAVLRWVKH 72 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHH--HHHHHHhcCcHHhcCCHHHHHHHhCcccC------CCCCHHHHHHHHHHHHHC
Confidence 4578889999999999999999999 9999999999999988 36667776 677899999999999999
Q ss_pred cC
Q 015877 393 SS 394 (399)
Q Consensus 393 n~ 394 (399)
+.
T Consensus 73 ~~ 74 (101)
T smart00875 73 DP 74 (101)
T ss_pred CH
Confidence 85
No 34
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.55 E-value=2.7e-07 Score=84.31 Aligned_cols=133 Identities=16% Similarity=0.168 Sum_probs=107.3
Q ss_pred eEEehhhHHHHhcCHHHHHhhcCCCCCCC-c---ceEEeeCCCHHHHHHHhhhhccCCCCCchhhccCCcccchHHHHHH
Q 015877 213 ETFAAHKLVLAARSPVFRAQLYGPMKDQN-T---QCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQH 288 (399)
Q Consensus 213 ~~~~aHk~iLa~~S~~F~~~~~~~~~e~~-~---~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~ 288 (399)
.+++||++++. |..||..||.|++.|++ . ....++.....+.+..|+|+|+++.. +..+-+.+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~td------------i~~~~A~d 367 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTD------------IIFDVASD 367 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccccc------------chHHHHhh
Confidence 35999999998 88999999999998854 2 23455677889999999999999887 67778899
Q ss_pred HHHHhhhcChH--H-HHHHHHHHHhc---cCChhHHHHHHHHHHHcCchHHHHHHHHhccCcCcHHHHhcccchHHHH
Q 015877 289 LLAAADRYGLE--R-LRLLCEANLCE---DVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRGGYSIDSIHIQQ 360 (399)
Q Consensus 289 ll~~A~~~~~~--~-L~~~c~~~l~~---~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~~f~~L~ 360 (399)
++..|+++-++ + |+..+-..|++ .++.-++..++.++...+...|...+.+++. .|+..++..+++.+.-
T Consensus 368 vll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a--~hl~~l~~dPe~~~~~ 443 (516)
T KOG0511|consen 368 VLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEA--RHLLLLLPDPEGDSSL 443 (516)
T ss_pred HHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhcCCchhhHHH
Confidence 99999998665 2 45554444443 3455578999999999999999999999999 9999999988887654
No 35
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.35 E-value=7.5e-07 Score=77.99 Aligned_cols=134 Identities=22% Similarity=0.289 Sum_probs=86.9
Q ss_pred CchhHhHHHhhhcCC-cceEEEEE-cC--------------eEEehhhHHHHhcCHHHHHhhcCCCCCCC---------c
Q 015877 188 SNIGQHFGQLLESGK-RTDVNFEV-NG--------------ETFAAHKLVLAARSPVFRAQLYGPMKDQN---------T 242 (399)
Q Consensus 188 ~~l~~~l~~l~~~~~-~sDv~~~v-~~--------------~~~~aHk~iLa~~S~~F~~~~~~~~~e~~---------~ 242 (399)
..+..++..|+...- +-|+.+.+ +| .+++|||+|.++||++|+.++.....+.. .
T Consensus 220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P 299 (401)
T KOG2838|consen 220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP 299 (401)
T ss_pred hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence 345566677776544 34454443 33 46999999999999999999954332221 2
Q ss_pred ceEEeeC-CCHHHHH-HHhhhhccCCCCCchhhccCC--------------c--ccchHHHHHHHHHHhhhcChHHHHHH
Q 015877 243 QCIKVED-MEAPVFK-ALLHFIYWDSLPDMEELTGMS--------------S--KWASTLMSQHLLAAADRYGLERLRLL 304 (399)
Q Consensus 243 ~~i~l~~-~~~~~f~-~~L~~iYt~~~~~~~~~~~~~--------------~--~~~~~~~~~~ll~~A~~~~~~~L~~~ 304 (399)
.+|.+++ +=|.+|. .+|+++||+.+.......-.+ | -......+++|+.+|-+|+++-|.+.
T Consensus 300 kRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa 379 (401)
T KOG2838|consen 300 KRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQA 379 (401)
T ss_pred ceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566653 4455554 478999999875332110000 0 02345567889999999999999999
Q ss_pred HHHHHhccCChhHHHHH
Q 015877 305 CEANLCEDVAINTVATT 321 (399)
Q Consensus 305 c~~~l~~~~~~~n~~~~ 321 (399)
|++.+......++...+
T Consensus 380 ~e~Vir~acaadlsn~c 396 (401)
T KOG2838|consen 380 CEDVIRKACAADLSNGC 396 (401)
T ss_pred HHHHHHhhhhhhccccc
Confidence 99998876655554433
No 36
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.34 E-value=5.5e-07 Score=78.83 Aligned_cols=83 Identities=22% Similarity=0.299 Sum_probs=69.3
Q ss_pred CCCchhHhHHHhhhcCCcceEEEEEcCeEEehhhHHHHhcCHHHHHhhcCCCCCCC--cceEEeeCCCHHHHHHHhhhhc
Q 015877 186 PPSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQN--TQCIKVEDMEAPVFKALLHFIY 263 (399)
Q Consensus 186 p~~~l~~~l~~l~~~~~~sDv~~~v~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~--~~~i~l~~~~~~~f~~~L~~iY 263 (399)
|...+.+++.+..+.....|+-|+....-|+|||++|++|||+|+.+...+..... .-.|..-+++.++|+++|+++|
T Consensus 113 ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~ 192 (401)
T KOG2838|consen 113 EANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLI 192 (401)
T ss_pred chhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHH
Confidence 34678899999988889999999999999999999999999999998865432222 1356667899999999999999
Q ss_pred cCCCC
Q 015877 264 WDSLP 268 (399)
Q Consensus 264 t~~~~ 268 (399)
+|+.-
T Consensus 193 tgEfg 197 (401)
T KOG2838|consen 193 TGEFG 197 (401)
T ss_pred hcccc
Confidence 99875
No 37
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.02 E-value=3.7e-05 Score=67.32 Aligned_cols=95 Identities=24% Similarity=0.372 Sum_probs=79.7
Q ss_pred EEEEEcCeEEehhhHHHHhcCHHHHHhhcCCCC--CCCcceEEeeCCCHHHHHHHhhhhccCCCCCchhhccCCcccchH
Q 015877 206 VNFEVNGETFAAHKLVLAARSPVFRAQLYGPMK--DQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWAST 283 (399)
Q Consensus 206 v~~~v~~~~~~aHk~iLa~~S~~F~~~~~~~~~--e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~ 283 (399)
|.+.|||..|..+|.-|.....+|++|+..+.. ...+..|-| |-+|.-|..+|+||-.|.++.. -+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LP----------e~~ 75 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLP----------ESE 75 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCc----------cch
Confidence 568899999999999999999999999988763 223345555 5799999999999997776521 567
Q ss_pred HHHHHHHHHhhhcChHHHHHHHHHHHhc
Q 015877 284 LMSQHLLAAADRYGLERLRLLCEANLCE 311 (399)
Q Consensus 284 ~~~~~ll~~A~~~~~~~L~~~c~~~l~~ 311 (399)
..+.+|+.=|.+|.++.|.++|+..+..
T Consensus 76 kel~El~~EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 76 KELKELLREAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 7899999999999999999999998764
No 38
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.73 E-value=3.1e-05 Score=58.94 Aligned_cols=88 Identities=23% Similarity=0.385 Sum_probs=65.4
Q ss_pred EEEEEcCeEEehhhHHHH-hcCHHHHHhhcCC---CCCCCcceEEeeCCCHHHHHHHhhhhcc-CCCCCchhhccCCccc
Q 015877 206 VNFEVNGETFAAHKLVLA-ARSPVFRAQLYGP---MKDQNTQCIKVEDMEAPVFKALLHFIYW-DSLPDMEELTGMSSKW 280 (399)
Q Consensus 206 v~~~v~~~~~~aHk~iLa-~~S~~F~~~~~~~---~~e~~~~~i~l~~~~~~~f~~~L~~iYt-~~~~~~~~~~~~~~~~ 280 (399)
|.|.|||+.|.+-+..|. ....+|..|+.+. .......++-+ |-+|..|+.+|+|+.+ +.++..
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~---------- 69 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIP---------- 69 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB-------------
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCC----------
Confidence 678999999999999999 4567899999764 33344556666 5799999999999999 566521
Q ss_pred chHHHHHHHHHHhhhcChHHH-HHHH
Q 015877 281 ASTLMSQHLLAAADRYGLERL-RLLC 305 (399)
Q Consensus 281 ~~~~~~~~ll~~A~~~~~~~L-~~~c 305 (399)
.......++.-|++|+++.| ++.|
T Consensus 70 -~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 70 -DEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp -TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred -CchhHHHHHHHHHHcCCCccccCCC
Confidence 23457889999999999988 6665
No 39
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.36 E-value=0.00095 Score=49.19 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=62.8
Q ss_pred EEEEE-cCeEEehhhHHHHhcCHHHHHhhcCCC--CCCCcceEEeeCCCHHHHHHHhhhh-ccCCCCCchhhccCCcccc
Q 015877 206 VNFEV-NGETFAAHKLVLAARSPVFRAQLYGPM--KDQNTQCIKVEDMEAPVFKALLHFI-YWDSLPDMEELTGMSSKWA 281 (399)
Q Consensus 206 v~~~v-~~~~~~aHk~iLa~~S~~F~~~~~~~~--~e~~~~~i~l~~~~~~~f~~~L~~i-Yt~~~~~~~~~~~~~~~~~ 281 (399)
|.++. +|.+|-..|.+ |.-|+-.|+||.|+. .+...+++.+.+++...++.+.+|+ |.-+.......- ...++
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~ei--PeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEI--PEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccC--CCCCC
Confidence 44444 56677776664 668999999998765 5566789999999999999999987 322211110001 11238
Q ss_pred hHHHHHHHHHHhhhcC
Q 015877 282 STLMSQHLLAAADRYG 297 (399)
Q Consensus 282 ~~~~~~~ll~~A~~~~ 297 (399)
..+.+++||.+|+++.
T Consensus 96 ppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 96 PPEMALELLMAANYLE 111 (112)
T ss_pred CHHHHHHHHHHhhhhc
Confidence 8999999999999875
No 40
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.02 E-value=0.0032 Score=48.76 Aligned_cols=92 Identities=13% Similarity=0.152 Sum_probs=61.7
Q ss_pred EEEEE-cCeEEehhhHHHHhcCHHHHHhhcCCCCCC-CcceEEeeCCCHHHHHHHhhhhccCCCCCchhh--ccCCccc-
Q 015877 206 VNFEV-NGETFAAHKLVLAARSPVFRAQLYGPMKDQ-NTQCIKVEDMEAPVFKALLHFIYWDSLPDMEEL--TGMSSKW- 280 (399)
Q Consensus 206 v~~~v-~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~-~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~--~~~~~~~- 280 (399)
+++.. +|.+|.+.+.+. ..|..++.|+.+...+. ....|++++++..+++.+++|++.-.-...... .....|.
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 45554 788999999976 59999999996533222 225899999999999999999964322110000 0111221
Q ss_pred ----chHHHHHHHHHHhhhcCh
Q 015877 281 ----ASTLMSQHLLAAADRYGL 298 (399)
Q Consensus 281 ----~~~~~~~~ll~~A~~~~~ 298 (399)
++.+.+.+|+.||+++++
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 566678888888888764
No 41
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.87 E-value=0.0033 Score=57.64 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=83.1
Q ss_pred eEEehhhHHHHhcCHHHHHhhcCCCC-CCCcceEEee-CCCHHHHHHHhhhhccCCCCCchhhccCCcccchHHHHHHHH
Q 015877 213 ETFAAHKLVLAARSPVFRAQLYGPMK-DQNTQCIKVE-DMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLL 290 (399)
Q Consensus 213 ~~~~aHk~iLa~~S~~F~~~~~~~~~-e~~~~~i~l~-~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~ll 290 (399)
+.|.|.+.+|-..=.||+..+..... .....+|.|. .-+..+|+=+++|+....-. ++..++..+|
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~------------l~~~NvvsIl 81 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPS------------LTPSNVVSIL 81 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCc------------CCcCcEEEeE
Confidence 57999999999999999999954111 1122345544 46789999999999984333 7888999999
Q ss_pred HHhhhcChHHHHHHHHHHHhccCC----------hhHHHHHHHHHHHcCchHHHHHHHH
Q 015877 291 AAADRYGLERLRLLCEANLCEDVA----------INTVATTLALAEQHHCFQLKSVCLK 339 (399)
Q Consensus 291 ~~A~~~~~~~L~~~c~~~l~~~~~----------~~n~~~~l~~A~~~~~~~L~~~~~~ 339 (399)
.-|++++|+.|.+.|..|+.++++ --|---+..+|.++...+|..+-++
T Consensus 82 iSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el~~~~l~ 140 (317)
T PF11822_consen 82 ISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEELEAAFLR 140 (317)
T ss_pred ehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccHhHhhhh
Confidence 999999999999999999865432 1122234566777766666554333
No 42
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.65 E-value=0.0036 Score=57.91 Aligned_cols=101 Identities=22% Similarity=0.270 Sum_probs=70.5
Q ss_pred HhHHHhhhcCC---cceEEEEE-cCeEEehhhHHHHhcCHHHHHhhcCCCCCCCcceEEeeCCCHHHHHHHhhhhccCCC
Q 015877 192 QHFGQLLESGK---RTDVNFEV-NGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSL 267 (399)
Q Consensus 192 ~~l~~l~~~~~---~sDv~~~v-~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~ 267 (399)
..+..++++.- ..|+++.. .|+.|-|||.+|++||.+|...+..-+ ....+|+-..+-+.+|..+|+|+|-..-
T Consensus 135 ahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~~n 212 (516)
T KOG0511|consen 135 AHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLNTN 212 (516)
T ss_pred hHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHhhh
Confidence 45566666643 36888877 577899999999999998865553322 1234565566789999999999997632
Q ss_pred CCchhhccCCcccchHHHHHHHHHHhhhcChHHHHHHHH
Q 015877 268 PDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCE 306 (399)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~ 306 (399)
. ........|+.+..+|+++.|....+
T Consensus 213 a------------~~~~qynallsi~~kF~~e~l~~~~~ 239 (516)
T KOG0511|consen 213 A------------EWKDQYNALLSIEVKFSKEKLSLEIS 239 (516)
T ss_pred h------------hhhhHHHHHHhhhhhccHHHhHHHHh
Confidence 2 33445577888888888777655443
No 43
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.013 Score=48.78 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=75.8
Q ss_pred cCeEEehhhHHHHhcCHHHHHhhcCCCCCCCcceEEeeCCCHHHHHHHhhhhccCCCCCc---h-----hhccCCcc---
Q 015877 211 NGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDM---E-----ELTGMSSK--- 279 (399)
Q Consensus 211 ~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~---~-----~~~~~~~~--- 279 (399)
+|+.|.+-..+. ..|..+.+++....-......|+|+.++..+|..+|.|++.-.-... . .......|
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 688899888775 47888888885322121115799999999999999999987332110 0 00001112
Q ss_pred --cchHHHHHHHHHHhhhcChHHHHHHHHHHHhccCChhHHHHHH
Q 015877 280 --WASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTL 322 (399)
Q Consensus 280 --~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~~~~~n~~~~l 322 (399)
.+...++.+|..||.+++++.|..+|...+...+...+..++.
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir 136 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIR 136 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHH
Confidence 2456688999999999999999999999887655444444443
No 44
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0053 Score=66.99 Aligned_cols=153 Identities=15% Similarity=0.178 Sum_probs=103.0
Q ss_pred eeecCceeecCeEEEEEEecCCCCCCCCCCeEEEEEEeeCC----CceEEEEEEEEEeeCCCCccceeeeccccceecCC
Q 015877 55 YIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE----GTDVRALFELTLLDQSGKERHKVHSHFGRTLESGP 130 (399)
Q Consensus 55 ~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~----~w~~~a~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 130 (399)
...|+.|..|+.+|++.+.|+++. ...++.|+.|... .|.+.+++.+.+.|..+.... ......
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~--------~~~~~~ 109 (1093)
T KOG1863|consen 42 RALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSLKSWSCGAQAVLRVKNTIDNLPD--------PEKAIH 109 (1093)
T ss_pred HhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCCcceEecchhhhccccCCCCchh--------hhhhhh
Confidence 456889999999999999999873 3459999998763 289999999999993222211 111223
Q ss_pred eeeeccCccccceeeeecccc--cccccccCCeEEEEEEeeeecccCCCCccccccCCCCchhHhHHHhhhcCCcceEEE
Q 015877 131 YTLKYRGSMWGYKRFFKRTLL--EQSDYLKGDCLSVHCSVGVVKSHTEGPKIYSIAIPPSNIGQHFGQLLESGKRTDVNF 208 (399)
Q Consensus 131 ~~f~~~~~~~G~~~fi~~~~L--~~~~~l~~d~l~i~~~i~v~~~~~~~~~~~~~~~p~~~l~~~l~~l~~~~~~sDv~~ 208 (399)
+.|.....+||+..|+.++.+ ...+|+.+|++.+++.|.+...... ...... +......|-+
T Consensus 110 h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~--------------~~~~d~--k~~tg~~vGL 173 (1093)
T KOG1863|consen 110 HVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL--------------MNPYDS--KRLTGFPVGL 173 (1093)
T ss_pred hcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc--------------cchhhh--hhcCCCCccc
Confidence 566667889999999999999 4578999999999999988762111 001111 1122333545
Q ss_pred EEcCeEEehhhHHHHh-cCHHHHHhhcC
Q 015877 209 EVNGETFAAHKLVLAA-RSPVFRAQLYG 235 (399)
Q Consensus 209 ~v~~~~~~aHk~iLa~-~S~~F~~~~~~ 235 (399)
.-.|-+.++...+-+- .=+.||..++.
T Consensus 174 ~N~GaTCY~NsllQ~lf~~~~FR~~Vy~ 201 (1093)
T KOG1863|consen 174 KNLGATCYVNSLLQVLFLIPEFRRAVYS 201 (1093)
T ss_pred cCCCceeeehHHHHHHHccHHHHHHHhc
Confidence 5556666766665532 24667777755
No 45
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.23 E-value=0.022 Score=39.42 Aligned_cols=55 Identities=13% Similarity=0.266 Sum_probs=43.6
Q ss_pred EEEEE-cCeEEehhhHHHHhcCHHHHHhhcCCCCCCCcceEEeeCCCHHHHHHHhhhhc
Q 015877 206 VNFEV-NGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIY 263 (399)
Q Consensus 206 v~~~v-~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY 263 (399)
++|+. +|+.|.+.+.++. .|..++.|+.+...+.. .|++++++...++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHH
Confidence 44554 7899999998865 99999999976433333 79999999999999999986
No 46
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.13 E-value=0.018 Score=54.50 Aligned_cols=93 Identities=25% Similarity=0.357 Sum_probs=68.8
Q ss_pred eEEEEEcCeEEehhhHHHHhcC--HHHHHhhcCCCCCCCcce-EEeeCCCHHHHHHHhhhhccCCCCCchhhccCCcccc
Q 015877 205 DVNFEVNGETFAAHKLVLAARS--PVFRAQLYGPMKDQNTQC-IKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWA 281 (399)
Q Consensus 205 Dv~~~v~~~~~~aHk~iLa~~S--~~F~~~~~~~~~e~~~~~-i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~ 281 (399)
=|.|-|||+.|.-.+.-|+... .+|.+++.+.+....... ..+-|-+|+.|..+|+|+-|++++.
T Consensus 12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~------------ 79 (465)
T KOG2714|consen 12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDA------------ 79 (465)
T ss_pred eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCC------------
Confidence 3778899999999999998655 799999988774433322 2334679999999999999999983
Q ss_pred hHHHH-HHHHHHhhhcChHHHHH---HHHHHH
Q 015877 282 STLMS-QHLLAAADRYGLERLRL---LCEANL 309 (399)
Q Consensus 282 ~~~~~-~~ll~~A~~~~~~~L~~---~c~~~l 309 (399)
..... ..+..=|.+|+++.|.. +|++.+
T Consensus 80 ~g~~~~~llhdEA~fYGl~~llrrl~~~~~~F 111 (465)
T KOG2714|consen 80 SGVFPERLLHDEAMFYGLTPLLRRLTLCEELF 111 (465)
T ss_pred ccCchhhhhhhhhhhcCcHHHHHHhhcCcccc
Confidence 22223 33444899999998776 555543
No 47
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.73 E-value=0.026 Score=48.70 Aligned_cols=93 Identities=19% Similarity=0.308 Sum_probs=71.7
Q ss_pred eEEEEEcCeEEehhhHHHHhcCH--HHHHhhcCC--CCCCCcceEEeeCCCHHHHHHHhhhhccCCCCCchhhccCCccc
Q 015877 205 DVNFEVNGETFAAHKLVLAARSP--VFRAQLYGP--MKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKW 280 (399)
Q Consensus 205 Dv~~~v~~~~~~aHk~iLa~~S~--~F~~~~~~~--~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~ 280 (399)
=|.+.++|+.|-.-.--|..|-| -+.+||.+. +.+...+--.+-|-+|.-|+-+|+|+-.|.++.
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~----------- 78 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPS----------- 78 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceee-----------
Confidence 46678899988877777776644 577888653 223333344555789999999999999999984
Q ss_pred chHHHHHHHHHHhhhcChHHHHHHHHHH
Q 015877 281 ASTLMSQHLLAAADRYGLERLRLLCEAN 308 (399)
Q Consensus 281 ~~~~~~~~ll~~A~~~~~~~L~~~c~~~ 308 (399)
.+..++..+|+.|++|++-.|+...++.
T Consensus 79 ~s~i~~lgvLeeArff~i~sL~~hle~~ 106 (302)
T KOG1665|consen 79 LSDIDCLGVLEEARFFQILSLKDHLEDS 106 (302)
T ss_pred cCCccHHHHHHHhhHHhhHhHHhHHhhh
Confidence 4556789999999999999999988873
No 48
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.20 E-value=0.013 Score=56.68 Aligned_cols=77 Identities=26% Similarity=0.369 Sum_probs=63.6
Q ss_pred eeeEEEEEEcCccccccC---CCCCeeecCceee--cCeEEEEEEecCCCCCCCCCCeEEEEEEeeCC------CceEEE
Q 015877 33 VNGSHQFKITGYSLSKGL---GIGKYIASDTFMV--GGYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRA 101 (399)
Q Consensus 33 ~~~~~~w~I~nfs~~~~~---~~g~~~~S~~f~~--gg~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~------~w~~~a 101 (399)
..|...|+|.+|...+.. +.+..+.|+.|+. .||..+.++|-||+.. +.+.++|+|+....+ .|+++-
T Consensus 278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~-~~~~~~s~~~~~~~ge~d~~l~wpf~~ 356 (391)
T KOG0297|consen 278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGT-GKGTHLSLYFVVMRGEYDALLPWPFRQ 356 (391)
T ss_pred cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCC-CCcceeeeeeeecccCcccccccCCCC
Confidence 468999999999555432 3466789999984 6999999999999874 377899999988874 399999
Q ss_pred EEEEEEeeC
Q 015877 102 LFELTLLDQ 110 (399)
Q Consensus 102 ~~~~~ll~~ 110 (399)
++++.++++
T Consensus 357 ~v~~~l~dq 365 (391)
T KOG0297|consen 357 KVTLMLLDQ 365 (391)
T ss_pred ceEEEEecc
Confidence 999999999
No 49
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=93.67 E-value=0.041 Score=51.08 Aligned_cols=143 Identities=20% Similarity=0.203 Sum_probs=111.1
Q ss_pred eEEEEEcCeEEehhhHHHHhcCHHHHHhhcCCCCCCCcceEEeeCCCHHHHHHHhhhhccCCCCCchhhccCCcccchHH
Q 015877 205 DVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTL 284 (399)
Q Consensus 205 Dv~~~v~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~ 284 (399)
|.++......+.+|+.+|+..|+.|..+....-..+...-+.+-.++...+..+.+++|.. +... -...
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~----------e~~~ 96 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKH----------EMVF 96 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhh----------HHHH
Confidence 3444445678999999999999999888765533333456777788899999999999988 3211 2334
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHHHhc-cCChhHHHHHHHHHHHcCchHHHHHHHHhccCcCcHHHHhcccchHHHH
Q 015877 285 MSQHLLAAADRYGLERLRLLCEANLCE-DVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRGGYSIDSIHIQQ 360 (399)
Q Consensus 285 ~~~~ll~~A~~~~~~~L~~~c~~~l~~-~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~~f~~L~ 360 (399)
....++.+...|.++..+..|...+.. .++..++...+..+..+....|...+...+. ..|....+++.+..+.
T Consensus 97 ~~ihll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~--~~~~~H~~t~~~~~~~ 171 (319)
T KOG1778|consen 97 FDIHLLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIM--LLFDLHLQTEKWFAYT 171 (319)
T ss_pred HHHHHHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHH--HHHHHHhcccCceeee
Confidence 567777777899999999999888764 5678889999999999999999999999998 8888888876665443
No 50
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.48 Score=37.21 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=73.3
Q ss_pred EEEE-EcCeEEehhhHHHHhcCHHHHHhhcCCCCCCCcceEEeeCCCHHHHHHHhhhhccC--CCC-Cchhhc-----cC
Q 015877 206 VNFE-VNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWD--SLP-DMEELT-----GM 276 (399)
Q Consensus 206 v~~~-v~~~~~~aHk~iLa~~S~~F~~~~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~--~~~-~~~~~~-----~~ 276 (399)
+.+. .+|+.|.+.+.+ |-||-..+.|+.... ...-.|.++.+...+|+.++.|+-.. ... +..++. +.
T Consensus 4 i~l~s~dge~F~vd~~i-AerSiLikN~l~d~~--~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~ 80 (158)
T COG5201 4 IELESIDGEIFRVDENI-AERSILIKNMLCDST--ACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPS 80 (158)
T ss_pred eEEEecCCcEEEehHHH-HHHHHHHHHHhcccc--ccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCc
Confidence 4444 467888887765 778988888885321 11224677899999999999998533 222 111111 11
Q ss_pred Ccc-----cchHHHHHHHHHHhhhcChHHHHHHHHHHHhccCChhHH
Q 015877 277 SSK-----WASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTV 318 (399)
Q Consensus 277 ~~~-----~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~~~~~n~ 318 (399)
+.| ..+-+++.++..+|+++.++.|.+.|+..+...+...+.
T Consensus 81 D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSp 127 (158)
T COG5201 81 DFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSP 127 (158)
T ss_pred cHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCH
Confidence 112 235567888999999999999999999988765544433
No 51
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=93.15 E-value=0.53 Score=38.88 Aligned_cols=97 Identities=20% Similarity=0.241 Sum_probs=72.5
Q ss_pred ceEEEEEcCeEEehhhHHHHhcCHHHHHhh-cCCC---CCCCcceEEeeCCCHHHHHHHhhhhccCCCCCchhhccCCcc
Q 015877 204 TDVNFEVNGETFAAHKLVLAARSPVFRAQL-YGPM---KDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSK 279 (399)
Q Consensus 204 sDv~~~v~~~~~~aHk~iLa~~S~~F~~~~-~~~~---~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~ 279 (399)
.=|.+-|||..|..-|.-|..-+.-|-.-| ...+ ......--.+-|-+|.-|.-+|+|+-.|++.
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklv----------- 89 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLV----------- 89 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhh-----------
Confidence 347778999999999999998885555544 3322 1122223455578899999999999999986
Q ss_pred cchHHHHHHHHHHhhhcChHHHHHHHHHHHhcc
Q 015877 280 WASTLMSQHLLAAADRYGLERLRLLCEANLCED 312 (399)
Q Consensus 280 ~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 312 (399)
++.-.-..+|.-|++|.++.|+++..+.|.+.
T Consensus 90 -l~~l~eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 90 -LNKLSEEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred -hhhhhhhccchhhhccCChHHHHHHHHHHHHH
Confidence 44444567889999999999999998888653
No 52
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=91.21 E-value=0.42 Score=34.69 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHhhhcChHHHHHHHHHHHhccCChhHH
Q 015877 281 ASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTV 318 (399)
Q Consensus 281 ~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~~~~~n~ 318 (399)
++...+.+|+.+|++++++.|...|...+...+...++
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~ 48 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSP 48 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-H
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCH
Confidence 45678999999999999999999999988765544433
No 53
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=75.02 E-value=6.4 Score=34.64 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=59.6
Q ss_pred EEEEEcCeEEehhhH-HHHhcCHHHHHhhcCCCCCC--CcceEEeeCCCHHHHHHHhhhhccCCCCCchhhccCCcccch
Q 015877 206 VNFEVNGETFAAHKL-VLAARSPVFRAQLYGPMKDQ--NTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWAS 282 (399)
Q Consensus 206 v~~~v~~~~~~aHk~-iLa~~S~~F~~~~~~~~~e~--~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~ 282 (399)
+.+-|||.-|..-.. +++-.-....+||.+...-. ......| |-+-..|+-+|+|+-+..+... ..
T Consensus 11 v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lp----------e~ 79 (221)
T KOG2723|consen 11 VELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLP----------ED 79 (221)
T ss_pred eeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccc----------hh
Confidence 555677776655444 33334556677776633211 1223333 4677899999999999544311 23
Q ss_pred HHHHHHHHHHhhhcChHHHHHHHHHHH
Q 015877 283 TLMSQHLLAAADRYGLERLRLLCEANL 309 (399)
Q Consensus 283 ~~~~~~ll~~A~~~~~~~L~~~c~~~l 309 (399)
..++..|+..|++|+++.+..++.+..
T Consensus 80 f~e~~~L~rEA~f~~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 80 FAEVERLVREAEFFQLEAPVTYLLNSG 106 (221)
T ss_pred hhhHHHHHHHHHHHccccHHHHHhccc
Confidence 457889999999999998777666543
No 54
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=65.41 E-value=7.5 Score=37.97 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=37.5
Q ss_pred cCChhHHHHHHHHHHHcCchHHHHHHHHhccCcCcHHHHhcccchHHHHH
Q 015877 312 DVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRGGYSIDSIHIQQI 361 (399)
Q Consensus 312 ~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~~f~~L~~ 361 (399)
.+..+|++.++..|.+|....|.+.|++||. . .++....|..|++
T Consensus 184 ~~~~dtvi~tl~~AkKY~VpaLer~CVkflr--~---~l~~~naf~~L~q 228 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKYLVPALERQCVKFLR--K---NLMADNAFLELFQ 228 (521)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH--H---hcCChHHHHHHHH
Confidence 4678999999999999999999999999998 3 3555666777764
No 55
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=64.05 E-value=7.3 Score=35.63 Aligned_cols=87 Identities=16% Similarity=0.249 Sum_probs=58.4
Q ss_pred CCcceEEEEEcCeEEehhhHHHHhcC-HHHHHhhcCCCC---CCCcceEEe-eCCCHHHHHHHhhhhccCCCCCchhhcc
Q 015877 201 GKRTDVNFEVNGETFAAHKLVLAARS-PVFRAQLYGPMK---DQNTQCIKV-EDMEAPVFKALLHFIYWDSLPDMEELTG 275 (399)
Q Consensus 201 ~~~sDv~~~v~~~~~~aHk~iLa~~S-~~F~~~~~~~~~---e~~~~~i~l-~~~~~~~f~~~L~~iYt~~~~~~~~~~~ 275 (399)
+..--++..+++..|-+.+.+|.++- .-.-.||.+++. .....+..+ ++++..+|+++|+|--+|.+.-
T Consensus 93 g~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRC------ 166 (438)
T KOG3840|consen 93 GEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRC------ 166 (438)
T ss_pred CCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeC------
Confidence 34456888899999999998887653 234456654431 122235555 5899999999999999987641
Q ss_pred CCcccchHHHHHHHHHHhhhcCh
Q 015877 276 MSSKWASTLMSQHLLAAADRYGL 298 (399)
Q Consensus 276 ~~~~~~~~~~~~~ll~~A~~~~~ 298 (399)
-+...+.+|-+++|++.+
T Consensus 167 -----P~~vSvpELrEACDYLli 184 (438)
T KOG3840|consen 167 -----PSSVSVSELREACDYLLV 184 (438)
T ss_pred -----CCCCchHHHHhhcceEEe
Confidence 123346677777777754
No 56
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=58.42 E-value=8.9 Score=29.22 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=26.7
Q ss_pred ChhHHHHHHHHHHHcCchHHHHHHHHhcc
Q 015877 314 AINTVATTLALAEQHHCFQLKSVCLKFVA 342 (399)
Q Consensus 314 ~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 342 (399)
..+++..++.+|..++++.|++.|.+++.
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~ 108 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQ 108 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 37889999999999999999999999987
No 57
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=44.98 E-value=6.6 Score=36.48 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=38.5
Q ss_pred ccCChhHHHHHHHHHHHcCchHHHHHHHHhccCcCcHHHHhccc
Q 015877 311 EDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRGGYSID 354 (399)
Q Consensus 311 ~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~ 354 (399)
..+++.|++.++.-++-.....|.+.|+.|+. .|+.+|+.++
T Consensus 70 p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~--~~~~~Iv~~~ 111 (317)
T PF11822_consen 70 PSLTPSNVVSILISSEFLQMESLVEECLQYCH--DHMSEIVASP 111 (317)
T ss_pred CcCCcCcEEEeEehhhhhccHHHHHHHHHHHH--HhHHHHHcCC
Confidence 35799999999999999999999999999999 9999998755
No 58
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=42.81 E-value=31 Score=25.75 Aligned_cols=55 Identities=16% Similarity=0.321 Sum_probs=35.0
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHhccC------------ChhHHHHHHHHHHHc---CchHHHHHHHHhcc
Q 015877 287 QHLLAAADRYGLERLRLLCEANLCEDV------------AINTVATTLALAEQH---HCFQLKSVCLKFVA 342 (399)
Q Consensus 287 ~~ll~~A~~~~~~~L~~~c~~~l~~~~------------~~~n~~~~l~~A~~~---~~~~L~~~~~~~i~ 342 (399)
.+++.+|..|+++.|...|.+++..+. +.+.+..++.- +.. +-..+-+.+++++.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~-~~l~v~~E~~v~~av~~W~~ 71 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSS-DDLNVSSEDDVFEAVLRWLK 71 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHT-SS--ECTCCCHHHHHHHHHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhc-cccccccHHHHHHHHHHHHH
Confidence 468899999999999999999997542 23333333331 111 22346677777776
No 59
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=38.54 E-value=27 Score=33.49 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHhhhcChHHHHHHHHHHHhc
Q 015877 281 ASTLMSQHLLAAADRYGLERLRLLCEANLCE 311 (399)
Q Consensus 281 ~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~ 311 (399)
++..++...|.+|.+|+++.++..|.++|..
T Consensus 170 lspkta~~yYea~ckYgle~vk~kc~ewl~~ 200 (488)
T KOG4682|consen 170 LSPKTACGYYEAACKYGLESVKKKCLEWLLN 200 (488)
T ss_pred cChhhhhHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 6778899999999999999999999999864
No 60
>PHA03098 kelch-like protein; Provisional
Probab=35.67 E-value=31 Score=34.97 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=29.1
Q ss_pred cCChhHHHHHHHHHHHcCchHHHHHHHHhcc
Q 015877 312 DVAINTVATTLALAEQHHCFQLKSVCLKFVA 342 (399)
Q Consensus 312 ~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 342 (399)
.++.+|+.+++..|+.++++.|+..|.+|+.
T Consensus 72 ~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~ 102 (534)
T PHA03098 72 NITSNNVKDILSIANYLIIDFLINLCINYII 102 (534)
T ss_pred EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4688899999999999999999999999998
No 61
>PHA02713 hypothetical protein; Provisional
Probab=33.63 E-value=62 Score=33.13 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=29.4
Q ss_pred cCChhHHHHHHHHHHHcCchHHHHHHHHhcc
Q 015877 312 DVAINTVATTLALAEQHHCFQLKSVCLKFVA 342 (399)
Q Consensus 312 ~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 342 (399)
.++.+|+..+|..|..+.+..|++.|.+||.
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~ 120 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIK 120 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 3788999999999999999999999999998
No 62
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=31.52 E-value=54 Score=24.11 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.6
Q ss_pred HHHHHhhhcChHHHHHHHHHHHhcc
Q 015877 288 HLLAAADRYGLERLRLLCEANLCED 312 (399)
Q Consensus 288 ~ll~~A~~~~~~~L~~~c~~~l~~~ 312 (399)
+++.+|+.|+.+.|...|..++.++
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHH
Confidence 5778899999999999999998754
No 63
>PHA02790 Kelch-like protein; Provisional
Probab=25.01 E-value=45 Score=33.39 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=29.3
Q ss_pred cCChhHHHHHHHHHHHcCchHHHHHHHHhcc
Q 015877 312 DVAINTVATTLALAEQHHCFQLKSVCLKFVA 342 (399)
Q Consensus 312 ~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 342 (399)
.++.+|+..+|..|..++...+++.|.+|+.
T Consensus 87 ~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~ 117 (480)
T PHA02790 87 YIDSHNVVNLLRASILTSVEFIIYTCINFIL 117 (480)
T ss_pred EEecccHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 4688999999999999999999999999998
No 64
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=22.72 E-value=33 Score=26.90 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=34.5
Q ss_pred cCeEEehhhHHHHhcCHHHHHhhcC-CCCCCCcceEEee-CC--CHHHHHHHhhhhccCCCC
Q 015877 211 NGETFAAHKLVLAARSPVFRAQLYG-PMKDQNTQCIKVE-DM--EAPVFKALLHFIYWDSLP 268 (399)
Q Consensus 211 ~~~~~~aHk~iLa~~S~~F~~~~~~-~~~e~~~~~i~l~-~~--~~~~f~~~L~~iYt~~~~ 268 (399)
++..+.+|-.+++.+||.....=.. +. +- ..+..+ |+ -.+.....|.++|.+.-.
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~IpY--~~-~~ii~PFDFNglEe~I~~~l~~mY~~s~~ 78 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFIIPY--TH-EGIIPPFDFNGLEEGIKNTLKIMYKDSKI 78 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEEEec--cC-CCeECCcccCcHHHHHHHHHHHHhCCCCc
Confidence 4678999999999999988542110 00 01 112221 22 356778899999998653
No 65
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=22.25 E-value=2.3e+02 Score=26.02 Aligned_cols=49 Identities=18% Similarity=0.087 Sum_probs=32.7
Q ss_pred EcCccc--cccCCCCCeeecCceeecCeEEEEEEecCCCCCCCCCCeEEEEEEeeCC
Q 015877 41 ITGYSL--SKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE 95 (399)
Q Consensus 41 I~nfs~--~~~~~~g~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~l~~~~~ 95 (399)
+..|+. ..+...+..+.+|.+..++..|.+..++ | ...|..+.+.....
T Consensus 18 l~~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~l~v~n~ 68 (297)
T KOG1987|consen 18 LVIYSNGFVKGGCKWRLSAYPKGNYLSLTLSVSDSP-G-----WERYAKLRLTVVNQ 68 (297)
T ss_pred hhccccceeecCceEEEEEecCCCEEEEEEEeccCC-C-----cceeEEEEEEEccC
Confidence 677774 3333456667788887778889999888 3 34567776665543
No 66
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=22.23 E-value=5.8e+02 Score=24.87 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=26.8
Q ss_pred cCChhHHHHHHHHHHHcCchHHHHHHHHhcc
Q 015877 312 DVAINTVATTLALAEQHHCFQLKSVCLKFVA 342 (399)
Q Consensus 312 ~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 342 (399)
.+..+..+++|.+|.+|+..+|....-+|++
T Consensus 112 ~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~ 142 (620)
T KOG4350|consen 112 GVEEDILLDYLSLAHRYGFIQLETAISEYLK 142 (620)
T ss_pred cchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3456778899999999999999999988887
Done!