BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015878
         (399 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CF7|A Chain A, Structural Basis Of Dna Recognition By The Heterodimeric
           Cell Cycle Transcription Factor E2f-Dp
          Length = 76

 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 56/67 (83%), Gaps = 1/67 (1%)

Query: 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSK 186
           R++ SLGLLT KF++L+QEAKDG LDL   A+ L V QKRRIYDITNVLEGIGLIEK SK
Sbjct: 7   RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSK 66

Query: 187 NHIRWKG 193
           N I+WKG
Sbjct: 67  NSIQWKG 73


>pdb|2AZE|B Chain B, Structure Of The Rb C-Terminal Domain Bound To An E2f1-Dp1
           Heterodimer
          Length = 106

 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 200 SKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPC 259
           S +  ++  L  ++  L   E ++D  +      +R L E+ + Q+  ++T +D+ S+  
Sbjct: 2   SHMGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIAD 61

Query: 260 FQNQTLIAIKAPQASYIEVPDPDEDISFLKRQYKMIIRSTTGPIDVYL 307
              Q ++ IKAP  + ++  D  E+       +++ ++S  GPIDV+L
Sbjct: 62  PAEQMVMVIKAPPETQLQAVDSSEN-------FQISLKSKQGPIDVFL 102


>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
           From Synechocystis Sp
          Length = 416

 Score = 29.6 bits (65), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 9/60 (15%)

Query: 264 TLIAI---KAPQASYIEVPDPDEDISFLKRQYKMIIRSTTGPIDVYLLSKYQSEGKDITL 320
           T++AI   K P    +E PDP+ D+ ++  Q + +I      +DV L + +   G ++TL
Sbjct: 357 TVMAIAEDKVPPTINLENPDPECDLDYVPGQSRALI------VDVALSNSFGFGGHNVTL 410


>pdb|1CF7|B Chain B, Structural Basis Of Dna Recognition By The Heterodimeric
           Cell Cycle Transcription Factor E2f-Dp
          Length = 95

 Score = 28.9 bits (63), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 165 KRRIYDITNVLEGIGLIEKTSKNHIRWKG 193
           +RR+YD  NVL  + +I K  K  I+W G
Sbjct: 61  RRRVYDALNVLMAMNIISK-EKKEIKWIG 88


>pdb|3DGC|R Chain R, Structure Of Il-22IL-22r1
 pdb|3DGC|S Chain S, Structure Of Il-22IL-22r1
          Length = 210

 Score = 28.5 bits (62), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 316 KDITLQQANSANPSTWNYEPCGVPNFRLSLEHEDNQKRSSDTFSLMSSEAASGIQKIVPS 375
           + +  Q +N  N  TW+  P G P+   S+E++        T+      A  G Q+I   
Sbjct: 10  QHVKFQSSNFENILTWDSGPEGTPDTVYSIEYK--------TYGERDWVAKKGCQRITRK 61

Query: 376 DCDI 379
            CD+
Sbjct: 62  SCDL 65


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.129    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,081,043
Number of Sequences: 62578
Number of extensions: 431148
Number of successful extensions: 934
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 931
Number of HSP's gapped (non-prelim): 15
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)