Query 015878
Match_columns 399
No_of_seqs 212 out of 459
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 04:05:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aze_B Transcription factor E2 100.0 6.3E-37 2.1E-41 259.1 10.3 102 202-310 4-105 (106)
2 1cf7_A Protein (transcription 100.0 3E-29 1E-33 201.0 6.1 73 123-195 2-75 (76)
3 1cf7_B Protein (transcription 99.3 3.4E-13 1.2E-17 112.5 3.5 66 128-196 7-91 (95)
4 1qgp_A Protein (double strande 92.5 0.11 3.9E-06 40.5 4.1 55 138-192 17-72 (77)
5 2xvc_A ESCRT-III, SSO0910; cel 92.4 0.12 4E-06 39.8 3.8 44 138-182 13-56 (59)
6 1oyi_A Double-stranded RNA-bin 92.1 0.14 4.9E-06 41.4 4.2 62 130-194 12-73 (82)
7 1qbj_A Protein (double-strande 92.0 0.16 5.4E-06 40.5 4.4 56 137-192 12-68 (81)
8 2heo_A Z-DNA binding protein 1 91.5 0.2 6.8E-06 37.8 4.3 52 136-188 11-62 (67)
9 1r7j_A Conserved hypothetical 91.3 0.5 1.7E-05 38.1 6.7 47 135-185 8-54 (95)
10 3r0a_A Putative transcriptiona 90.2 1.2 4E-05 36.9 8.1 46 139-184 30-75 (123)
11 3deu_A Transcriptional regulat 90.2 1.6 5.6E-05 36.9 9.3 37 149-185 66-102 (166)
12 3eco_A MEPR; mutlidrug efflux 90.0 2.3 7.9E-05 34.1 9.6 46 139-184 35-80 (139)
13 3jw4_A Transcriptional regulat 89.8 1.6 5.5E-05 35.6 8.7 45 140-184 46-90 (148)
14 3qph_A TRMB, A global transcri 89.5 0.19 6.6E-06 49.0 3.2 52 140-194 24-75 (342)
15 2oqg_A Possible transcriptiona 89.2 1.9 6.6E-05 33.9 8.4 47 139-188 25-71 (114)
16 3bro_A Transcriptional regulat 87.8 2.2 7.6E-05 34.1 8.0 46 140-185 39-84 (141)
17 2htj_A P fimbrial regulatory p 87.7 0.76 2.6E-05 35.0 5.0 44 139-184 4-47 (81)
18 2a61_A Transcriptional regulat 87.7 1.6 5.6E-05 35.1 7.2 36 149-184 45-80 (145)
19 1ku9_A Hypothetical protein MJ 86.9 4.5 0.00015 32.3 9.3 55 139-194 30-87 (152)
20 2gxg_A 146AA long hypothetical 86.4 4.7 0.00016 32.3 9.2 36 149-184 48-83 (146)
21 1sfx_A Conserved hypothetical 84.6 2.8 9.6E-05 31.9 6.8 45 139-185 24-68 (109)
22 2fa5_A Transcriptional regulat 84.3 5.6 0.00019 32.7 8.9 37 149-185 61-97 (162)
23 3cuo_A Uncharacterized HTH-typ 83.7 2.2 7.6E-05 32.4 5.8 40 148-187 35-74 (99)
24 2fbh_A Transcriptional regulat 83.6 8.6 0.00029 30.7 9.6 38 148-185 49-86 (146)
25 2kko_A Possible transcriptiona 83.4 1.9 6.5E-05 34.6 5.5 39 150-188 37-75 (108)
26 3s2w_A Transcriptional regulat 83.0 8.5 0.00029 31.7 9.6 36 150-185 63-98 (159)
27 1y0u_A Arsenical resistance op 82.9 0.97 3.3E-05 35.3 3.5 47 140-191 36-82 (96)
28 2y75_A HTH-type transcriptiona 82.7 1.5 5E-05 36.1 4.7 47 138-184 12-59 (129)
29 2hr3_A Probable transcriptiona 82.6 2.1 7E-05 34.6 5.5 44 140-184 40-83 (147)
30 2qww_A Transcriptional regulat 82.5 5.7 0.00019 32.3 8.2 42 140-183 46-87 (154)
31 1on2_A Transcriptional regulat 82.4 1.1 3.8E-05 36.8 3.8 37 150-186 21-57 (142)
32 3g3z_A NMB1585, transcriptiona 82.0 7.2 0.00025 31.5 8.6 34 151-184 45-78 (145)
33 3u2r_A Regulatory protein MARR 81.8 2 6.7E-05 36.0 5.3 45 141-185 52-96 (168)
34 3nrv_A Putative transcriptiona 81.8 7.3 0.00025 31.5 8.6 43 140-184 45-87 (148)
35 2d1h_A ST1889, 109AA long hypo 81.7 0.88 3E-05 34.8 2.8 38 149-186 34-71 (109)
36 3oop_A LIN2960 protein; protei 81.6 6.4 0.00022 31.7 8.1 35 150-184 50-84 (143)
37 3jth_A Transcription activator 81.3 2.5 8.6E-05 32.7 5.4 38 150-187 35-72 (98)
38 3cjn_A Transcriptional regulat 80.7 7.2 0.00025 32.1 8.3 36 149-184 64-99 (162)
39 2frh_A SARA, staphylococcal ac 80.6 1.4 4.7E-05 35.9 3.8 45 140-184 42-86 (127)
40 2eth_A Transcriptional regulat 80.6 5.2 0.00018 32.8 7.4 35 150-184 57-91 (154)
41 3bja_A Transcriptional regulat 80.4 15 0.00053 28.9 9.9 43 140-184 38-80 (139)
42 2x4h_A Hypothetical protein SS 80.3 1.7 5.8E-05 35.4 4.2 38 148-185 28-65 (139)
43 1lj9_A Transcriptional regulat 80.0 4 0.00014 32.8 6.3 35 150-184 42-76 (144)
44 3bpv_A Transcriptional regulat 80.0 2.6 8.9E-05 33.5 5.2 43 140-184 34-76 (138)
45 1s3j_A YUSO protein; structura 79.9 2 7E-05 35.0 4.6 36 150-185 50-85 (155)
46 3bj6_A Transcriptional regulat 79.0 3.9 0.00013 33.2 6.0 36 150-185 53-88 (152)
47 3boq_A Transcriptional regulat 79.0 13 0.00044 30.4 9.3 36 149-184 60-95 (160)
48 2bv6_A MGRA, HTH-type transcri 78.5 0.53 1.8E-05 38.1 0.6 37 149-185 49-85 (142)
49 3k0l_A Repressor protein; heli 78.5 3 0.0001 34.7 5.3 37 149-185 58-94 (162)
50 3rkx_A Biotin-[acetyl-COA-carb 78.4 1.9 6.5E-05 41.7 4.6 57 138-194 6-63 (323)
51 1ub9_A Hypothetical protein PH 78.0 4.3 0.00015 30.8 5.7 44 140-185 21-64 (100)
52 2lkp_A Transcriptional regulat 77.7 4 0.00014 32.6 5.7 36 150-185 44-79 (119)
53 2fu4_A Ferric uptake regulatio 77.7 1.3 4.6E-05 33.5 2.7 46 140-185 22-72 (83)
54 1r1u_A CZRA, repressor protein 77.6 2.9 0.0001 33.1 4.8 45 140-187 31-75 (106)
55 3f6o_A Probable transcriptiona 77.3 2.2 7.4E-05 34.7 4.0 47 139-188 22-68 (118)
56 2fbk_A Transcriptional regulat 76.8 8.3 0.00029 32.7 7.7 34 151-184 86-119 (181)
57 2pg4_A Uncharacterized protein 76.5 2.2 7.5E-05 33.1 3.6 53 130-182 8-62 (95)
58 2nnn_A Probable transcriptiona 76.4 10 0.00035 30.0 7.7 35 150-184 51-85 (140)
59 2fbi_A Probable transcriptiona 76.4 4.9 0.00017 32.0 5.8 35 150-184 49-83 (142)
60 2nyx_A Probable transcriptiona 76.0 2.9 0.0001 35.2 4.6 35 150-184 58-92 (168)
61 1tbx_A ORF F-93, hypothetical 75.6 6.5 0.00022 30.3 6.2 39 149-187 20-62 (99)
62 3tgn_A ADC operon repressor AD 75.5 5.2 0.00018 32.2 5.8 43 140-185 43-85 (146)
63 2p4w_A Transcriptional regulat 75.5 18 0.0006 32.7 9.9 43 140-185 20-62 (202)
64 3mq0_A Transcriptional repress 75.4 3.6 0.00012 38.5 5.4 53 140-194 35-87 (275)
65 1j5y_A Transcriptional regulat 75.2 2.9 9.9E-05 36.8 4.5 54 138-193 24-78 (187)
66 4hbl_A Transcriptional regulat 75.1 14 0.00046 30.2 8.3 35 150-184 54-88 (149)
67 2hzt_A Putative HTH-type trans 74.7 2.4 8.1E-05 33.9 3.5 37 149-185 25-62 (107)
68 3hsr_A HTH-type transcriptiona 74.6 1.1 3.7E-05 36.5 1.5 38 147-184 46-83 (140)
69 2rdp_A Putative transcriptiona 74.0 14 0.00046 29.8 8.0 35 150-184 55-89 (150)
70 3ech_A MEXR, multidrug resista 73.8 14 0.00047 29.7 8.0 43 140-184 42-84 (142)
71 1u2w_A CADC repressor, cadmium 73.8 4.7 0.00016 33.0 5.2 46 140-187 47-92 (122)
72 3pqk_A Biofilm growth-associat 73.3 3.9 0.00013 31.9 4.4 45 140-187 28-72 (102)
73 2xrn_A HTH-type transcriptiona 73.2 10 0.00034 34.5 7.7 54 140-194 11-64 (241)
74 3bdd_A Regulatory protein MARR 72.9 3.8 0.00013 32.6 4.3 36 150-185 44-79 (142)
75 1sfu_A 34L protein; protein/Z- 72.4 5 0.00017 32.0 4.7 61 130-192 10-70 (75)
76 4b8x_A SCO5413, possible MARR- 72.1 2.3 7.8E-05 35.5 2.9 45 141-185 41-85 (147)
77 3e6m_A MARR family transcripti 71.9 7.9 0.00027 32.1 6.2 36 150-185 66-101 (161)
78 1a93_B MAX protein, coiled coi 71.8 5.8 0.0002 27.5 4.3 29 202-230 5-33 (34)
79 2cfx_A HTH-type transcriptiona 71.3 3.4 0.00012 34.5 3.8 47 136-184 6-52 (144)
80 2jt1_A PEFI protein; solution 70.1 3.5 0.00012 32.4 3.4 47 138-184 7-57 (77)
81 2f2e_A PA1607; transcription f 70.0 1.9 6.4E-05 36.7 2.0 57 126-185 11-71 (146)
82 3gpv_A Transcriptional regulat 69.5 11 0.00037 32.4 6.7 37 151-193 16-56 (148)
83 3kp7_A Transcriptional regulat 69.4 7.8 0.00027 31.6 5.5 37 148-184 48-84 (151)
84 3pfi_A Holliday junction ATP-d 69.2 3.6 0.00012 38.0 3.8 55 133-187 261-316 (338)
85 3nqo_A MARR-family transcripti 68.4 3.5 0.00012 35.7 3.4 45 140-184 46-90 (189)
86 2dbb_A Putative HTH-type trans 68.3 3.8 0.00013 34.2 3.5 50 133-184 7-56 (151)
87 2fsw_A PG_0823 protein; alpha- 68.0 4 0.00014 32.5 3.4 59 126-185 12-73 (107)
88 2ek5_A Predicted transcription 67.3 35 0.0012 28.4 9.3 50 138-187 11-64 (129)
89 3fm5_A Transcriptional regulat 67.2 3.8 0.00013 33.4 3.2 35 150-184 53-87 (150)
90 2cg4_A Regulatory protein ASNC 66.9 4.4 0.00015 33.9 3.6 49 134-184 7-55 (152)
91 2pex_A Transcriptional regulat 66.8 3.2 0.00011 33.9 2.6 37 149-185 59-95 (153)
92 3ihu_A Transcriptional regulat 66.7 14 0.00047 32.7 7.0 57 131-187 15-75 (222)
93 2jsc_A Transcriptional regulat 66.5 3.2 0.00011 33.8 2.5 44 139-185 25-68 (118)
94 3mkl_A HTH-type transcriptiona 66.3 4.8 0.00016 32.4 3.6 39 136-174 8-46 (120)
95 3cdh_A Transcriptional regulat 65.9 5.9 0.0002 32.4 4.1 37 148-184 54-90 (155)
96 1z7u_A Hypothetical protein EF 65.9 4.2 0.00014 32.7 3.2 36 150-185 34-70 (112)
97 1yyv_A Putative transcriptiona 65.8 2.6 9E-05 35.4 2.0 60 126-185 22-83 (131)
98 1i1g_A Transcriptional regulat 65.7 4.8 0.00017 32.9 3.6 45 138-184 7-51 (141)
99 3oou_A LIN2118 protein; protei 65.5 4.6 0.00016 31.8 3.3 43 136-178 6-48 (108)
100 2o0y_A Transcriptional regulat 65.5 12 0.0004 34.5 6.5 39 149-187 36-74 (260)
101 1p6r_A Penicillinase repressor 65.3 5 0.00017 30.2 3.3 46 138-185 12-61 (82)
102 2h09_A Transcriptional regulat 65.0 17 0.0006 30.0 6.9 37 150-186 53-89 (155)
103 2w25_A Probable transcriptiona 64.9 5.4 0.00019 33.3 3.8 49 134-184 6-54 (150)
104 2ip2_A Probable phenazine-spec 64.9 4.6 0.00016 37.4 3.6 42 150-191 40-81 (334)
105 2p5v_A Transcriptional regulat 64.7 5 0.00017 34.0 3.6 50 133-184 8-57 (162)
106 3by6_A Predicted transcription 64.7 17 0.00058 30.1 6.8 52 136-187 16-71 (126)
107 1mkm_A ICLR transcriptional re 64.5 6.5 0.00022 35.8 4.5 45 139-184 12-56 (249)
108 2qlz_A Transcription factor PF 64.4 8.4 0.00029 35.8 5.3 42 139-183 16-57 (232)
109 3f3x_A Transcriptional regulat 64.4 4.6 0.00016 32.6 3.1 42 140-184 42-83 (144)
110 3oio_A Transcriptional regulat 64.1 6 0.0002 31.4 3.7 43 135-177 7-49 (113)
111 3f6v_A Possible transcriptiona 63.6 7.7 0.00026 33.4 4.6 50 140-192 63-112 (151)
112 4ham_A LMO2241 protein; struct 63.6 25 0.00085 29.1 7.6 51 136-186 19-73 (134)
113 2wte_A CSA3; antiviral protein 63.5 6.2 0.00021 36.8 4.2 49 136-186 153-201 (244)
114 2dk5_A DNA-directed RNA polyme 62.9 7.1 0.00024 31.3 4.0 47 138-184 23-69 (91)
115 2cyy_A Putative HTH-type trans 62.5 5.5 0.00019 33.3 3.4 49 134-184 6-54 (151)
116 1fxk_C Protein (prefoldin); ar 62.4 14 0.00049 30.8 5.9 52 187-238 71-129 (133)
117 3i53_A O-methyltransferase; CO 62.1 4.2 0.00014 37.9 2.8 50 140-192 30-79 (332)
118 1ylf_A RRF2 family protein; st 62.1 7.7 0.00026 32.9 4.3 47 139-185 18-64 (149)
119 3mn2_A Probable ARAC family tr 61.7 6 0.00021 31.1 3.3 42 136-177 3-44 (108)
120 1r1t_A Transcriptional repress 61.6 5.9 0.0002 32.7 3.4 37 150-186 58-94 (122)
121 1xn7_A Hypothetical protein YH 60.4 5.8 0.0002 31.2 2.9 45 138-184 5-49 (78)
122 3hh0_A Transcriptional regulat 59.5 27 0.00091 30.0 7.2 35 151-191 4-42 (146)
123 4a5n_A Uncharacterized HTH-typ 59.3 7.1 0.00024 33.3 3.5 59 126-185 13-74 (131)
124 4aik_A Transcriptional regulat 59.3 40 0.0014 28.1 8.2 34 151-184 46-79 (151)
125 2ia0_A Putative HTH-type trans 58.4 7.7 0.00026 33.7 3.7 50 133-184 15-64 (171)
126 2pn6_A ST1022, 150AA long hypo 58.4 6.9 0.00024 32.5 3.2 45 138-184 6-50 (150)
127 3r4k_A Transcriptional regulat 58.4 8.8 0.0003 35.4 4.3 47 149-195 19-65 (260)
128 2r3s_A Uncharacterized protein 58.3 4.9 0.00017 37.0 2.5 42 149-191 37-78 (335)
129 3k69_A Putative transcription 57.9 9.6 0.00033 33.2 4.2 47 138-184 15-61 (162)
130 2k02_A Ferrous iron transport 57.8 6.5 0.00022 31.8 2.9 46 138-185 5-50 (87)
131 1v4r_A Transcriptional repress 57.6 14 0.00046 29.1 4.7 55 133-187 13-71 (102)
132 3tqn_A Transcriptional regulat 57.5 15 0.00052 29.7 5.1 52 136-187 14-69 (113)
133 2g7u_A Transcriptional regulat 57.2 11 0.00039 34.4 4.8 55 138-194 14-70 (257)
134 3lsg_A Two-component response 56.9 8.3 0.00028 30.0 3.3 42 136-177 3-45 (103)
135 3lst_A CALO1 methyltransferase 56.7 5.4 0.00018 37.6 2.6 43 148-191 52-94 (348)
136 3c7j_A Transcriptional regulat 56.5 32 0.0011 31.1 7.6 51 136-186 31-84 (237)
137 3sxy_A Transcriptional regulat 55.5 16 0.00056 32.1 5.4 41 147-187 31-71 (218)
138 2e1c_A Putative HTH-type trans 55.4 8.9 0.0003 33.4 3.6 50 133-184 25-74 (171)
139 1bl0_A Protein (multiple antib 54.8 7.2 0.00024 31.9 2.7 43 135-177 11-53 (129)
140 3gwz_A MMCR; methyltransferase 54.7 5.4 0.00018 38.1 2.2 44 148-191 68-112 (369)
141 4dzo_A Mitotic spindle assembl 54.4 42 0.0014 28.6 7.5 36 204-239 4-39 (123)
142 1wi9_A Protein C20ORF116 homol 54.3 12 0.0004 29.8 3.7 56 136-193 8-65 (72)
143 2k9s_A Arabinose operon regula 54.2 12 0.00039 29.4 3.8 41 136-176 4-45 (107)
144 2vn2_A DNAD, chromosome replic 54.0 8 0.00027 32.2 2.9 36 151-186 51-86 (128)
145 3df8_A Possible HXLR family tr 53.2 20 0.00069 28.8 5.2 57 129-186 17-78 (111)
146 1qzz_A RDMB, aclacinomycin-10- 53.2 7.1 0.00024 36.7 2.8 49 140-191 41-91 (374)
147 1jgs_A Multiple antibiotic res 53.1 4.4 0.00015 32.3 1.1 35 150-184 47-81 (138)
148 3neu_A LIN1836 protein; struct 52.5 48 0.0017 27.2 7.5 52 136-187 18-73 (125)
149 1xd7_A YWNA; structural genomi 51.2 74 0.0025 26.6 8.6 49 135-185 9-57 (145)
150 2zqm_A Prefoldin beta subunit 50.9 32 0.0011 27.6 6.0 76 159-238 30-111 (117)
151 2zdi_C Prefoldin subunit alpha 49.9 42 0.0015 28.7 6.9 52 187-238 81-139 (151)
152 1x19_A CRTF-related protein; m 49.7 10 0.00034 35.8 3.2 42 149-191 62-103 (359)
153 2ia2_A Putative transcriptiona 49.1 15 0.00052 33.8 4.3 45 149-195 34-78 (265)
154 1r8e_A Multidrug-efflux transp 48.7 45 0.0015 30.1 7.3 82 149-239 3-107 (278)
155 1z91_A Organic hydroperoxide r 48.7 4 0.00014 32.9 0.2 36 150-185 53-88 (147)
156 1tw3_A COMT, carminomycin 4-O- 48.6 10 0.00035 35.5 3.0 44 149-192 50-93 (360)
157 1okr_A MECI, methicillin resis 48.6 11 0.00038 29.8 2.9 46 138-185 13-62 (123)
158 1q1h_A TFE, transcription fact 48.5 7.3 0.00025 30.8 1.7 37 148-184 30-66 (110)
159 3he5_B Synzip2; heterodimeric 48.0 57 0.0019 23.9 6.2 38 202-239 8-45 (52)
160 1bia_A BIRA bifunctional prote 47.8 17 0.00059 34.6 4.5 54 138-193 8-62 (321)
161 1xmk_A Double-stranded RNA-spe 47.5 19 0.00064 28.5 4.0 56 135-192 11-67 (79)
162 3bvo_A CO-chaperone protein HS 47.3 54 0.0018 29.9 7.6 99 129-239 55-176 (207)
163 2yy0_A C-MYC-binding protein; 45.8 40 0.0014 24.9 5.3 32 204-235 19-50 (53)
164 3b73_A PHIH1 repressor-like pr 45.6 15 0.0005 30.6 3.2 53 133-187 11-65 (111)
165 3i4p_A Transcriptional regulat 45.4 15 0.0005 31.4 3.3 46 137-184 5-50 (162)
166 2wt7_A Proto-oncogene protein 45.4 51 0.0018 24.7 5.9 34 205-238 24-57 (63)
167 4fx0_A Probable transcriptiona 45.3 18 0.0006 30.2 3.7 36 149-184 50-85 (148)
168 3k2z_A LEXA repressor; winged 44.9 12 0.00041 32.9 2.7 38 148-185 21-58 (196)
169 3t8r_A Staphylococcus aureus C 44.4 23 0.00079 30.0 4.3 48 137-184 13-61 (143)
170 2v79_A DNA replication protein 44.3 11 0.00039 32.1 2.4 36 149-184 49-84 (135)
171 1hsj_A Fusion protein consisti 44.3 12 0.0004 36.6 2.8 45 140-184 409-453 (487)
172 2qvo_A Uncharacterized protein 44.1 13 0.00044 28.7 2.5 37 148-184 27-63 (95)
173 3m91_A Proteasome-associated A 43.4 68 0.0023 23.7 6.1 38 203-240 8-45 (51)
174 2b0l_A GTP-sensing transcripti 43.0 11 0.00037 30.5 2.0 39 147-185 38-77 (102)
175 1fp2_A Isoflavone O-methyltran 42.8 15 0.0005 34.6 3.1 50 141-191 42-96 (352)
176 3dp7_A SAM-dependent methyltra 42.7 14 0.00047 35.2 2.9 36 149-184 48-83 (363)
177 1m1j_C Fibrinogen gamma chain; 41.5 31 0.0011 35.0 5.4 12 370-381 310-321 (409)
178 3uo3_A J-type CO-chaperone JAC 41.1 88 0.003 27.9 7.8 109 125-240 24-147 (181)
179 1z4h_A TORI, TOR inhibition pr 40.9 11 0.00039 27.8 1.7 26 148-173 7-32 (66)
180 2xdj_A Uncharacterized protein 40.2 66 0.0022 25.8 6.1 39 202-240 25-63 (83)
181 3hho_A CO-chaperone protein HS 40.1 88 0.003 27.5 7.6 96 133-240 20-142 (174)
182 1p4x_A Staphylococcal accessor 39.9 17 0.00059 33.7 3.1 44 141-184 164-207 (250)
183 2aze_A Transcription factor DP 39.0 1.2E+02 0.004 27.2 8.2 33 265-305 66-98 (155)
184 1uly_A Hypothetical protein PH 38.9 21 0.00072 31.8 3.4 44 138-184 23-66 (192)
185 2j5u_A MREC protein; bacterial 38.7 19 0.00064 33.8 3.2 45 206-251 28-73 (255)
186 2o03_A Probable zinc uptake re 38.2 29 0.00099 28.6 3.9 46 140-186 16-66 (131)
187 1lwu_C Fibrinogen gamma chain; 37.5 15 0.00051 36.2 2.4 26 213-238 28-53 (323)
188 1mzb_A Ferric uptake regulatio 37.1 26 0.00089 29.1 3.5 46 140-185 23-73 (136)
189 1t2k_D Cyclic-AMP-dependent tr 37.1 84 0.0029 23.1 5.9 33 206-238 24-56 (61)
190 3dcf_A Transcriptional regulat 36.0 24 0.00081 29.1 3.1 41 129-169 29-69 (218)
191 3mcz_A O-methyltransferase; ad 35.6 22 0.00076 33.0 3.1 39 151-190 56-94 (352)
192 2g9w_A Conserved hypothetical 35.1 29 0.001 28.5 3.5 46 139-185 13-62 (138)
193 2kfs_A Conserved hypothetical 35.0 15 0.00051 32.6 1.7 25 149-173 29-53 (148)
194 3lwf_A LIN1550 protein, putati 35.0 29 0.00098 30.3 3.5 48 137-184 29-77 (159)
195 1zg3_A Isoflavanone 4'-O-methy 34.8 20 0.00067 33.8 2.6 44 140-184 35-81 (358)
196 3hrs_A Metalloregulator SCAR; 34.8 29 0.00098 31.1 3.6 40 147-186 16-55 (214)
197 1hw1_A FADR, fatty acid metabo 34.6 22 0.00075 31.5 2.8 49 138-186 14-66 (239)
198 1fxk_A Prefoldin; archaeal pro 34.5 61 0.0021 25.6 5.2 74 159-237 25-98 (107)
199 1nkp_B MAX protein, MYC proto- 34.3 61 0.0021 25.1 5.0 35 204-238 47-81 (83)
200 1ci6_A Transcription factor AT 34.1 98 0.0033 23.2 5.9 32 206-237 25-56 (63)
201 3gbg_A TCP pilus virulence reg 34.1 26 0.0009 31.3 3.2 38 136-173 170-207 (276)
202 2jn6_A Protein CGL2762, transp 33.8 10 0.00034 29.4 0.4 30 151-180 23-52 (97)
203 3ic7_A Putative transcriptiona 33.6 14 0.00048 30.6 1.3 52 136-187 16-71 (126)
204 2hs5_A Putative transcriptiona 33.5 27 0.00094 31.5 3.3 41 147-187 47-87 (239)
205 3viq_B Mating-type switching p 33.3 27 0.00092 28.5 2.8 30 207-236 4-33 (85)
206 1j9i_A GPNU1 DBD;, terminase s 33.0 19 0.00066 26.5 1.8 40 151-193 2-43 (68)
207 2qq9_A Diphtheria toxin repres 32.8 1.7E+02 0.0057 26.1 8.3 38 149-186 22-59 (226)
208 1fp1_D Isoliquiritigenin 2'-O- 32.3 19 0.00065 34.2 2.1 34 151-184 62-101 (372)
209 3gp4_A Transcriptional regulat 32.3 75 0.0025 27.0 5.7 34 204-237 88-121 (142)
210 1fzc_C Fibrin; blood coagulati 32.2 1.3E+02 0.0046 29.4 8.1 32 202-233 16-47 (319)
211 2k4b_A Transcriptional regulat 32.0 22 0.00075 28.8 2.1 44 140-185 40-87 (99)
212 2qko_A Possible transcriptiona 31.8 31 0.0011 28.9 3.1 42 129-170 26-67 (215)
213 1ci6_A Transcription factor AT 31.0 97 0.0033 23.2 5.5 34 202-235 28-61 (63)
214 1umq_A Photosynthetic apparatu 31.0 74 0.0025 25.1 5.0 40 131-173 36-76 (81)
215 1jnm_A Proto-oncogene C-JUN; B 31.0 89 0.003 23.1 5.2 34 205-238 23-56 (62)
216 2di3_A Bacterial regulatory pr 30.8 27 0.00092 31.2 2.7 37 147-183 23-60 (239)
217 3fiw_A Putative TETR-family tr 30.6 32 0.0011 29.9 3.1 44 127-170 21-64 (211)
218 1q06_A Transcriptional regulat 30.3 77 0.0026 26.5 5.4 81 152-239 1-107 (135)
219 2fxa_A Protease production reg 30.3 13 0.00046 32.8 0.6 36 150-185 61-96 (207)
220 1hqc_A RUVB; extended AAA-ATPa 30.2 41 0.0014 30.4 3.9 54 133-186 245-300 (324)
221 2qc0_A Uncharacterized protein 30.2 29 0.001 33.8 3.1 38 150-187 310-347 (373)
222 4a6d_A Hydroxyindole O-methylt 30.0 33 0.0011 32.6 3.3 46 140-186 33-78 (353)
223 2pjp_A Selenocysteine-specific 29.9 52 0.0018 26.8 4.1 56 132-189 63-118 (121)
224 1r8d_A Transcription activator 29.3 1.1E+02 0.0037 24.4 5.9 37 152-192 3-41 (109)
225 3bni_A Putative TETR-family tr 29.3 22 0.00074 30.5 1.8 43 128-170 40-82 (229)
226 1fxk_C Protein (prefoldin); ar 29.2 1E+02 0.0036 25.4 5.9 34 206-239 90-123 (133)
227 3u1d_A Uncharacterized protein 29.1 46 0.0016 29.3 3.9 46 140-185 34-80 (151)
228 3q8t_A Beclin-1; autophagy, AT 28.9 1.2E+02 0.0042 24.6 6.1 34 208-241 22-55 (96)
229 3nmd_A CGMP dependent protein 28.8 1.2E+02 0.004 24.1 5.7 8 206-213 21-28 (72)
230 2wv0_A YVOA, HTH-type transcri 28.8 59 0.002 29.5 4.7 51 136-186 15-69 (243)
231 4etp_A Kinesin-like protein KA 28.7 56 0.0019 32.6 4.8 34 206-239 5-38 (403)
232 1fxk_A Prefoldin; archaeal pro 28.5 1.4E+02 0.005 23.3 6.4 38 201-238 69-106 (107)
233 1gmj_A ATPase inhibitor; coile 28.3 1.2E+02 0.0043 24.6 5.9 28 213-240 53-80 (84)
234 1d5y_A ROB transcription facto 28.1 26 0.0009 31.5 2.2 41 136-176 4-44 (292)
235 1p4x_A Staphylococcal accessor 28.0 44 0.0015 30.9 3.7 44 141-184 40-83 (250)
236 3edp_A LIN2111 protein; APC883 27.7 53 0.0018 29.8 4.2 52 135-186 13-68 (236)
237 3p9c_A Caffeic acid O-methyltr 27.7 36 0.0012 32.5 3.1 45 140-184 45-94 (364)
238 2gqq_A Leucine-responsive regu 27.2 15 0.0005 31.3 0.3 47 135-183 13-59 (163)
239 3qqa_A CMER; alpha-helical, he 27.1 19 0.00066 29.7 1.0 45 125-169 13-57 (216)
240 2fe3_A Peroxide operon regulat 26.7 57 0.0019 27.4 3.9 46 140-186 27-77 (145)
241 2obp_A Putative DNA-binding pr 26.2 39 0.0013 27.6 2.7 38 147-184 32-69 (96)
242 3he0_A Transcriptional regulat 26.1 49 0.0017 26.7 3.3 42 128-169 8-49 (196)
243 1y6u_A XIS, excisionase from t 26.1 27 0.00094 26.8 1.6 26 148-173 13-38 (70)
244 2yko_A LINE-1 ORF1P; RNA-bindi 25.7 90 0.0031 29.6 5.4 41 200-240 9-49 (233)
245 1ft9_A Carbon monoxide oxidati 25.7 63 0.0022 27.5 4.1 36 152-187 164-199 (222)
246 4dzn_A Coiled-coil peptide CC- 25.6 1.4E+02 0.0048 20.1 4.8 25 206-230 4-28 (33)
247 2wuj_A Septum site-determining 25.4 72 0.0024 23.6 3.8 36 199-234 22-57 (57)
248 3nmd_A CGMP dependent protein 25.3 1.3E+02 0.0045 23.8 5.4 14 221-234 50-63 (72)
249 1sd4_A Penicillinase repressor 25.1 54 0.0019 25.8 3.3 45 139-185 14-62 (126)
250 3l7w_A Putative uncharacterize 24.8 2.3E+02 0.008 22.3 7.1 45 140-184 14-59 (108)
251 1fx7_A Iron-dependent represso 24.7 62 0.0021 28.9 4.0 35 152-186 25-59 (230)
252 1tc3_C Protein (TC3 transposas 24.6 39 0.0013 21.5 2.0 26 152-177 22-47 (51)
253 3dv8_A Transcriptional regulat 24.5 33 0.0011 28.9 2.1 39 151-190 169-207 (220)
254 2p5k_A Arginine repressor; DNA 24.4 62 0.0021 22.6 3.2 37 142-184 12-53 (64)
255 1fpo_A HSC20, chaperone protei 24.3 2.3E+02 0.0079 24.7 7.5 97 131-239 15-137 (171)
256 3dkw_A DNR protein; CRP-FNR, H 24.3 49 0.0017 28.0 3.1 38 152-190 179-216 (227)
257 3e6c_C CPRK, cyclic nucleotide 24.1 58 0.002 28.4 3.6 40 151-191 177-216 (250)
258 1nkp_A C-MYC, MYC proto-oncoge 24.1 1.5E+02 0.0052 23.5 5.7 35 204-238 52-86 (88)
259 2zkz_A Transcriptional repress 24.1 62 0.0021 25.2 3.4 37 150-187 40-76 (99)
260 2qlz_A Transcription factor PF 24.0 46 0.0016 30.8 3.1 43 149-191 176-218 (232)
261 3bru_A Regulatory protein, TET 24.0 59 0.002 26.9 3.5 42 129-170 28-69 (222)
262 2zhg_A Redox-sensitive transcr 24.0 3.1E+02 0.011 23.4 8.2 75 152-239 12-118 (154)
263 2esh_A Conserved hypothetical 23.8 2.8E+02 0.0096 22.1 10.6 40 142-184 20-68 (118)
264 4ev0_A Transcription regulator 23.7 68 0.0023 26.8 3.9 39 151-190 163-201 (216)
265 2v7f_A RPS19, RPS19E SSU ribos 23.6 57 0.002 28.5 3.4 44 140-186 59-116 (150)
266 2id3_A Putative transcriptiona 23.5 21 0.0007 30.6 0.5 42 129-170 38-79 (225)
267 2hxi_A Putative transcriptiona 23.4 52 0.0018 29.2 3.2 44 126-169 24-67 (241)
268 1jko_C HIN recombinase, DNA-in 23.4 34 0.0012 22.3 1.6 22 152-173 22-43 (52)
269 3bwg_A Uncharacterized HTH-typ 23.2 85 0.0029 28.3 4.7 51 136-186 10-64 (239)
270 2w57_A Ferric uptake regulatio 23.2 46 0.0016 28.2 2.7 46 140-185 22-72 (150)
271 3cta_A Riboflavin kinase; stru 23.1 31 0.0011 30.8 1.7 38 148-185 24-61 (230)
272 1l8d_A DNA double-strand break 22.9 1.4E+02 0.0049 23.7 5.5 33 206-238 66-98 (112)
273 2fmy_A COOA, carbon monoxide o 22.9 57 0.002 27.6 3.2 40 151-191 167-207 (220)
274 2ozu_A Histone acetyltransfera 22.8 91 0.0031 30.4 4.9 50 131-183 188-243 (284)
275 2dg7_A Putative transcriptiona 22.8 68 0.0023 26.2 3.6 38 133-170 9-46 (195)
276 4b4t_K 26S protease regulatory 22.4 4.3E+02 0.015 26.5 10.0 39 201-239 46-84 (428)
277 1gd2_E Transcription factor PA 22.3 1.1E+02 0.0037 23.8 4.4 32 206-237 31-62 (70)
278 1l8d_A DNA double-strand break 22.3 1.5E+02 0.0053 23.5 5.6 38 202-239 8-45 (112)
279 1nlw_A MAD protein, MAX dimeri 22.1 1.4E+02 0.0048 23.4 5.1 30 206-235 49-78 (80)
280 2iu5_A DHAS, YCEG, HTH-type dh 22.1 69 0.0024 26.3 3.5 36 134-169 16-51 (195)
281 3u06_A Protein claret segregat 22.0 1.1E+02 0.0036 30.8 5.4 33 207-239 6-38 (412)
282 2dgc_A Protein (GCN4); basic d 22.0 1.1E+02 0.0038 23.0 4.3 29 206-234 32-60 (63)
283 3on4_A Transcriptional regulat 22.0 72 0.0025 25.5 3.5 41 129-169 8-48 (191)
284 3hh0_A Transcriptional regulat 21.9 1.9E+02 0.0064 24.6 6.3 23 206-228 89-111 (146)
285 1fzc_C Fibrin; blood coagulati 21.8 68 0.0023 31.5 3.9 35 205-239 12-46 (319)
286 2xig_A Ferric uptake regulatio 21.7 81 0.0028 26.7 4.0 45 140-185 32-81 (150)
287 3ppb_A Putative TETR family tr 21.7 76 0.0026 25.4 3.6 40 130-169 8-47 (195)
288 2qtq_A Transcriptional regulat 21.6 77 0.0026 25.8 3.7 42 128-169 13-54 (213)
289 3eet_A Putative GNTR-family tr 21.0 1E+02 0.0034 28.6 4.7 52 135-186 33-88 (272)
290 3col_A Putative transcription 20.8 54 0.0018 26.3 2.5 41 129-169 8-48 (196)
291 3to7_A Histone acetyltransfera 20.8 1.3E+02 0.0044 29.3 5.5 55 131-189 183-243 (276)
292 2zb9_A Putative transcriptiona 20.7 34 0.0011 28.5 1.3 40 131-170 23-62 (214)
293 2rae_A Transcriptional regulat 20.6 79 0.0027 25.9 3.6 44 127-170 13-56 (207)
294 2pq8_A Probable histone acetyl 20.6 64 0.0022 31.4 3.3 49 131-183 183-237 (278)
295 2w83_C C-JUN-amino-terminal ki 20.6 83 0.0028 25.3 3.4 29 207-235 47-75 (77)
296 2qen_A Walker-type ATPase; unk 20.4 1E+02 0.0036 27.6 4.6 44 138-184 285-333 (350)
297 3gpv_A Transcriptional regulat 20.4 92 0.0031 26.5 4.0 9 138-146 63-71 (148)
298 1sgm_A Putative HTH-type trans 20.3 82 0.0028 25.2 3.5 38 133-170 8-45 (191)
299 2yve_A Transcriptional regulat 20.3 71 0.0024 26.2 3.2 37 134-170 7-43 (185)
300 3m9b_A Proteasome-associated A 20.3 96 0.0033 29.7 4.4 38 203-240 53-90 (251)
301 3mwm_A ZUR, putative metal upt 20.2 71 0.0024 26.7 3.2 45 140-185 19-68 (139)
302 3g7r_A Putative transcriptiona 20.2 66 0.0023 27.2 3.1 44 127-170 31-74 (221)
303 1zk8_A Transcriptional regulat 20.2 70 0.0024 25.7 3.1 43 128-170 5-47 (183)
304 3oja_A Leucine-rich immune mol 20.1 1.3E+02 0.0045 29.5 5.7 17 222-238 460-476 (487)
305 3kcc_A Catabolite gene activat 20.1 1.3E+02 0.0046 26.4 5.2 38 151-189 217-254 (260)
306 3oja_B Anopheles plasmodium-re 20.1 1.5E+02 0.0051 29.6 6.1 28 213-240 539-566 (597)
No 1
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=100.00 E-value=6.3e-37 Score=259.10 Aligned_cols=102 Identities=25% Similarity=0.485 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhcccccccccHhhhccCCCCCCceEEEEeCCCCceEEecCC
Q 015878 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDP 281 (399)
Q Consensus 202 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lted~~n~~~aYVT~eDI~~l~~f~~qTvIAIKAP~gT~LEVPdP 281 (399)
+..++..||+|+++|..+|+.||++|++|+++|++|++|+.|.+|+|||++||++|+||++|||||||||+||+||||+|
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~~aYVT~~Di~~i~~f~~qtviaIkAP~gT~LeVpdp 83 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDS 83 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceecHHHHhcCcCCCcCeEEEEECCCCCeeeeCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcccceEEEEEecCCCCeEEEEecC
Q 015878 282 DEDISFLKRQYKMIIRSTTGPIDVYLLSK 310 (399)
Q Consensus 282 ~e~~~~~~~~yqI~LkS~~GPIdVyL~~~ 310 (399)
++ +|||||||++||||||||++
T Consensus 84 ~~-------~yqi~LkS~~GPIdV~L~~~ 105 (106)
T 2aze_B 84 SE-------NFQISLKSKQGPIDVFLCPE 105 (106)
T ss_dssp SS-------CEEEEEECSSSCCEEECCTT
T ss_pred Cc-------ceEEEEECCCCCEEEEEeCC
Confidence 74 59999999999999999996
No 2
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.95 E-value=3e-29 Score=201.04 Aligned_cols=73 Identities=67% Similarity=0.990 Sum_probs=65.8
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcc-eeeehhhhHHhhhhccceecccCCeeEEecCC
Q 015878 123 LSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSKNHIRWKGSD 195 (399)
Q Consensus 123 p~~~~R~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~V-qKRRIYDItNVLEgIgLIeK~sKN~i~W~G~~ 195 (399)
|.+.+|+++||++||++||++|++++++.++|++||+.|+| +|||||||+|||||||||+|.+||.|+|+|.+
T Consensus 2 ~~~~~R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W~G~~ 75 (76)
T 1cf7_A 2 PGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVG 75 (76)
T ss_dssp ----CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC---
T ss_pred CCCCCCccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEEeCCC
Confidence 56799999999999999999999999999999999999999 99999999999999999999999999999975
No 3
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.34 E-value=3.4e-13 Score=112.46 Aligned_cols=66 Identities=32% Similarity=0.534 Sum_probs=47.7
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHh-------------------cceeeehhhhHHhhhhccceecccCCe
Q 015878 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVL-------------------EVQKRRIYDITNVLEGIGLIEKTSKNH 188 (399)
Q Consensus 128 R~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L-------------------~VqKRRIYDItNVLEgIgLIeK~sKN~ 188 (399)
+..+.|..+..+..+.++.. +....+++|++| ..+||||||++|||++||||+| .|+.
T Consensus 7 k~~~GLr~fS~kVcekVk~k--~~Tty~eVAdeLV~e~~~~~~~~~~~~~~d~~~~rRRvYD~~NVl~a~gii~K-~k~~ 83 (95)
T 1cf7_B 7 KNGKGLRHFSMKVCEKVQRK--GTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISK-EKKE 83 (95)
T ss_dssp --CCHHHHHHHHHHHHHHHH--SEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCC-CSSC
T ss_pred ccCccHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhcccccCccchhcccccchhhHHHHHHHHHHhcceec-CCCE
Confidence 34455666666666666532 344555555554 4589999999999999999999 7999
Q ss_pred eEEecCCC
Q 015878 189 IRWKGSDS 196 (399)
Q Consensus 189 i~W~G~~~ 196 (399)
|+|+|++.
T Consensus 84 i~W~g~~~ 91 (95)
T 1cf7_B 84 IKWIGLPT 91 (95)
T ss_dssp EEBCCCC-
T ss_pred EEEecCCc
Confidence 99999874
No 4
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.53 E-value=0.11 Score=40.51 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=47.4
Q ss_pred HHHHHHHHhCC-CCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEEe
Q 015878 138 RKFINLIQEAK-DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK 192 (399)
Q Consensus 138 kkFI~Ll~~ap-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~ 192 (399)
++.+.+|.+.+ +..+...++|+.|+|.|+.|.-.+.-||.-|+|.+.+.+.=.|.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~ 72 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 72 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 66777786654 67899999999999999999999999999999999876666774
No 5
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=92.43 E-value=0.12 Score=39.83 Aligned_cols=44 Identities=27% Similarity=0.536 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhcccee
Q 015878 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIE 182 (399)
Q Consensus 138 kkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIe 182 (399)
++.++++++ .+|++|+...|.+++|.|--+||+.+=||.=|||.
T Consensus 13 ~~lL~yIr~-sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVN-NGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHH-TTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHH-cCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 456788876 68999999999999999999999999999999986
No 6
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=92.11 E-value=0.14 Score=41.39 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=54.0
Q ss_pred CCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEEecC
Q 015878 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGS 194 (399)
Q Consensus 130 dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~G~ 194 (399)
|-.-..+.++.+.+|+. ++ +...++|++|+++|.-++=.++-||.=|+|.+...+--+|.=.
T Consensus 12 d~~~~~~~~~IL~lL~~--~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~~ 73 (82)
T 1oyi_A 12 ERSNAEIVCEAIKTIGI--EG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFMT 73 (82)
T ss_dssp -CCSHHHHHHHHHHHSS--ST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEESC
T ss_pred ccchHHHHHHHHHHHHH--cC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCcceec
Confidence 44667788899999983 45 9999999999999999999999999999999999999999743
No 7
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=92.03 E-value=0.16 Score=40.47 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=47.5
Q ss_pred HHHHHHHHHhC-CCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEEe
Q 015878 137 TRKFINLIQEA-KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK 192 (399)
Q Consensus 137 TkkFI~Ll~~a-p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~ 192 (399)
-++.+.+|.+. |+..+...++|++|+|.|+-|.-.+.-||.-|+|.+.+.+.=.|.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~ 68 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 68 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeE
Confidence 45677777654 466899999999999999999999999999999999876667775
No 8
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=91.54 E-value=0.2 Score=37.83 Aligned_cols=52 Identities=13% Similarity=0.269 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCe
Q 015878 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNH 188 (399)
Q Consensus 136 LTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~ 188 (399)
.-.+.+++|.. .+..+.+.++|+.|++.|--++-+++.|+.-|+|+...+..
T Consensus 11 ~~~~IL~~L~~-~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~ 62 (67)
T 2heo_A 11 LEQKILQVLSD-DGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKY 62 (67)
T ss_dssp HHHHHHHHHHH-HCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTE
T ss_pred HHHHHHHHHHH-cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCce
Confidence 34567888875 34569999999999999999999999999999998754443
No 9
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=91.29 E-value=0.5 Score=38.09 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 135 lLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+....+..+. .+ +...++|..+++..|++-.+++.|+.-|||++..
T Consensus 8 eIi~~IL~~i~---~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~ 54 (95)
T 1r7j_A 8 EIIQAILEACK---SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEG 54 (95)
T ss_dssp HHHHHHHHHHT---TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHH---cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEC
Confidence 33444455554 34 8899999999999999999999999999999983
No 10
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=90.19 E-value=1.2 Score=36.88 Aligned_cols=46 Identities=9% Similarity=0.192 Sum_probs=39.1
Q ss_pred HHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 139 kFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+.+.+|...++..+...++|+.|++.|-.+|-.++.|+..|+|++.
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4556666555433999999999999999999999999999999986
No 11
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=90.18 E-value=1.6 Score=36.93 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=33.6
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
++.+.+.++|+.|++.+-.+.-+++-||.-|||+|..
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 3458999999999999999999999999999999983
No 12
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=89.96 E-value=2.3 Score=34.10 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=40.5
Q ss_pred HHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 139 kFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
..+.++...+++.+.+.++|+.+++.+=.+.-+++-||.-|+|++.
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 3455566666678999999999999999999999999999999987
No 13
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=89.83 E-value=1.6 Score=35.63 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=33.2
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
++.++...+++.+...++|+.|++.+=-+.-+++-||.-|||+|.
T Consensus 46 vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 46 MIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp HHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEee
Confidence 344455555578999999999999999999999999999999998
No 14
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=89.47 E-value=0.19 Score=49.04 Aligned_cols=52 Identities=13% Similarity=0.221 Sum_probs=42.8
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEEecC
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGS 194 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~G~ 194 (399)
++.|++. +.....++|+.+++.+.++|++++.|+.-|||++...+..+|.-.
T Consensus 24 Y~~Ll~~---g~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~av 75 (342)
T 3qph_A 24 YWTLLVY---GPSTAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAAY 75 (342)
T ss_dssp SHHHHHH---HHHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEEC
T ss_pred HHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEEc
Confidence 5555543 467788999999999999999999999999999986666777644
No 15
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=89.23 E-value=1.9 Score=33.86 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=38.1
Q ss_pred HHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCe
Q 015878 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNH 188 (399)
Q Consensus 139 kFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~ 188 (399)
+.+.++. .+.+.+.++|+.|++.+--++-.++.|+.-|+|++.....
T Consensus 25 ~IL~~L~---~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr 71 (114)
T 2oqg_A 25 EILTELG---RADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGR 71 (114)
T ss_dssp HHHHHHH---HSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCC
Confidence 3455553 2458999999999999999999999999999998764433
No 16
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=87.81 E-value=2.2 Score=34.08 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=39.7
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
++.++...+++.+...++|+.|++.+--++-+++-||.-|||++..
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 4555566665579999999999999999999999999999999873
No 17
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=87.74 E-value=0.76 Score=35.04 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 139 kFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+.+.++... +.+...++|+.|+|.+.-++-.++.|+.-|+|++.
T Consensus 4 ~Il~~L~~~--~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRH--NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHS--CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 456666553 46899999999999999999999999999999943
No 18
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=87.69 E-value=1.6 Score=35.06 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=33.7
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.+.+.++|+.|++.+--++-+++-||.-|+|++.
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 346899999999999999999999999999999997
No 19
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=86.86 E-value=4.5 Score=32.29 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=41.9
Q ss_pred HHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc---cCCeeEEecC
Q 015878 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT---SKNHIRWKGS 194 (399)
Q Consensus 139 kFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~---sKN~i~W~G~ 194 (399)
+.+.++.... +.+.+.++|+.|++.|=.++.+++.||.-|+|++. ......+.+.
T Consensus 30 ~il~~L~~~~-~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~ 87 (152)
T 1ku9_A 30 AVYAILYLSD-KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAV 87 (152)
T ss_dssp HHHHHHHHCS-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeec
Confidence 3455553233 56999999999999999999999999999999996 2234445543
No 20
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=86.37 E-value=4.7 Score=32.35 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=34.3
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.+.+.++|+.|++.+--++-+++-||.-|+|++.
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 667999999999999999999999999999999987
No 21
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=84.64 E-value=2.8 Score=31.86 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 139 kFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
+.+.++.. .+.+...++|+.|++.+--+|-+++.|+.-|+|++..
T Consensus 24 ~il~~l~~--~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 24 RIYSLLLE--RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 34555543 3458999999999999999999999999999999874
No 22
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=84.29 E-value=5.6 Score=32.66 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=33.0
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+.+...++|+.|++.+--++-+++.||.-|||++..
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 4578999999999999999999999999999999863
No 23
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=83.72 E-value=2.2 Score=32.45 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=35.7
Q ss_pred CCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 148 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
.++.+.+.++|+.|++.+--++-.++.|+..|+|++....
T Consensus 35 ~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 35 GSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDA 74 (99)
T ss_dssp TCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred hCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3557899999999999999999999999999999987543
No 24
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=83.60 E-value=8.6 Score=30.67 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=35.0
Q ss_pred CCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 148 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
..+.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 45678999999999999999999999999999999873
No 25
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=83.35 E-value=1.9 Score=34.63 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=35.0
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCe
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNH 188 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~ 188 (399)
+.+.+.++|+.|++.+.-++-.++.|+..|||++...+.
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr 75 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGT 75 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 678999999999999999999999999999998764443
No 26
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=82.96 E-value=8.5 Score=31.70 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=33.7
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
+.+...++|+.|++.+=-+.-+++-||.-|||+|..
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 568999999999999999999999999999999973
No 27
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=82.87 E-value=0.97 Score=35.27 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=39.2
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEE
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W 191 (399)
.+.++ .+.+.+.++|+.|++.+--++-.++.|+.-|+|++.. ..|..
T Consensus 36 Il~~L----~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-g~y~l 82 (96)
T 1y0u_A 36 ILRML----DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-ERWVV 82 (96)
T ss_dssp HHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred HHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-CEEEE
Confidence 44555 3568999999999999999999999999999999886 54444
No 28
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=82.71 E-value=1.5 Score=36.08 Aligned_cols=47 Identities=13% Similarity=0.257 Sum_probs=39.2
Q ss_pred HHHHHHHHhC-CCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 138 RKFINLIQEA-KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 138 kkFI~Ll~~a-p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
-+.+.++... +++.+...++|+.++|.++-++.|++.|+..|+|+..
T Consensus 12 l~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 12 LTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 3444455444 4678999999999999999999999999999999876
No 29
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=82.61 E-value=2.1 Score=34.64 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=37.2
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.++... .+.+...++|+.|++.+--++-+++-||.-|+|++.
T Consensus 40 iL~~l~~~-~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 40 VLGAIDRL-GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 34444441 456899999999999999999999999999999987
No 30
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=82.53 E-value=5.7 Score=32.32 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=36.0
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceec
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK 183 (399)
.+.++... +.+...++|+.|++.+-.+.-+++-||.-|||++
T Consensus 46 iL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 46 MINVIYST--PGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHS--TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 34444443 4599999999999999999999999999999999
No 31
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=82.38 E-value=1.1 Score=36.76 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=34.2
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
+.+.+.++|+.|+|.+--+.-+++.||.-|+|++...
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeC
Confidence 4689999999999999999999999999999999743
No 32
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=82.04 E-value=7.2 Score=31.45 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=32.5
Q ss_pred cccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.+.++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 78 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQ 78 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 3999999999999999999999999999999986
No 33
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=81.84 E-value=2 Score=36.05 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=35.2
Q ss_pred HHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 141 INLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 141 I~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
+.++....++.+.+.++|+.|++.+=-+.-+++-||.-|||+|..
T Consensus 52 L~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 52 LRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp HHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecC
Confidence 344444445689999999999999999999999999999999873
No 34
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=81.80 E-value=7.3 Score=31.45 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=36.0
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.++... +.+.+.++|+.|++.+=.++-+++-||.-|+|++.
T Consensus 45 iL~~l~~~--~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 45 IISVLSSA--SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHS--SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHcC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 34444443 47899999999999999999999999999999988
No 35
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=81.65 E-value=0.88 Score=34.85 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=34.8
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
++.+.+.++|+.|++.+--+|-+++.|+.-|+|++...
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 45689999999999999999999999999999998743
No 36
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=81.59 E-value=6.4 Score=31.70 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=33.5
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+.+.+.++|+.|++.+--+.-+++-||.-|+|+|.
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeecc
Confidence 67899999999999999999999999999999987
No 37
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=81.35 E-value=2.5 Score=32.71 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=34.9
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
+.+.+.++|+.|++.+.-++--++.|+..|||++....
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA 72 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 78999999999999999999999999999999877443
No 38
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=80.67 E-value=7.2 Score=32.05 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=33.7
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.+.+.++|+.|++.+--++-+++-||.-|+|++.
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 356899999999999999999999999999999986
No 39
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=80.61 E-value=1.4 Score=35.93 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=39.0
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
++.++...+++.+...++|+.|++.+=-+.-+++-||.-|||+|.
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 445555555578999999999999999999999999999999996
No 40
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=80.55 E-value=5.2 Score=32.84 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=33.1
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+.+.+.++|+.|++.+--++-+++.||.-|+|++.
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 36899999999999999999999999999999986
No 41
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=80.43 E-value=15 Score=28.87 Aligned_cols=43 Identities=9% Similarity=0.263 Sum_probs=36.7
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
++.++.. .+.+.+.++|+.|++.+--++-+++-||.-|+|++.
T Consensus 38 iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 38 VIQVLAK--SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHH--SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 4444444 346999999999999999999999999999999986
No 42
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=80.25 E-value=1.7 Score=35.38 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=35.6
Q ss_pred CCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 148 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.++.+.+.++|+.|++.+--++-+++.||.-|||++..
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 56779999999999999999999999999999999975
No 43
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=80.03 E-value=4 Score=32.80 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=33.2
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+.+...++|+.|++.+--++-+++-||.-|+|++.
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 46899999999999999999999999999999986
No 44
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=80.02 E-value=2.6 Score=33.54 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=36.7
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.++.. .+.+...++|+.|++.+--++-+++-||.-|+|++.
T Consensus 34 iL~~l~~--~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 34 CLLRIHR--EPGIKQDELATFFHVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHH--STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3344444 367899999999999999999999999999999995
No 45
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=79.86 E-value=2 Score=34.96 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=33.6
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
+.+.+.++|+.|++.+--++-+++-||.-|+|++..
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 468999999999999999999999999999999873
No 46
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=79.04 E-value=3.9 Score=33.18 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=33.6
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
+.+...++|+.|++.+--+.-+++-||.-|+|++..
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecC
Confidence 468999999999999999999999999999999973
No 47
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=78.95 E-value=13 Score=30.35 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=33.8
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.+.+.++|+.|++.+--+.-+++-||.-|||++.
T Consensus 60 ~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 60 PDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp TTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 456899999999999999999999999999999997
No 48
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=78.52 E-value=0.53 Score=38.06 Aligned_cols=37 Identities=11% Similarity=0.337 Sum_probs=34.1
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 3468999999999999999999999999999999874
No 49
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=78.47 E-value=3 Score=34.73 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=34.1
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+.+.+.++|+.|++.+=-+.-+++-||.-|||+|..
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecC
Confidence 3468999999999999999999999999999999973
No 50
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=78.45 E-value=1.9 Score=41.74 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccc-eecccCCeeEEecC
Q 015878 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGL-IEKTSKNHIRWKGS 194 (399)
Q Consensus 138 kkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgL-IeK~sKN~i~W~G~ 194 (399)
++.+++|..+.+..+.-.++|+.|+|+|+-|+--++.|+..|+ |+...+.-|+....
T Consensus 6 ~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~~ 63 (323)
T 3rkx_A 6 QDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETTTEEEEEEC
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCCCeEEEecC
Confidence 5678888877788999999999999999999999999999998 66555567888753
No 51
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=78.04 E-value=4.3 Score=30.75 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=36.6
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+.++.. .+.+.+.++|+.|++.+--+|-+++.||.-|+|++..
T Consensus 21 iL~~L~~--~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 21 IMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHh--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3444432 3468999999999999999999999999999999753
No 52
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=77.73 E-value=4 Score=32.57 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=33.2
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
+...+.++|+.|++.+--++-.++.||..|+|.+..
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 468999999999999999999999999999998763
No 53
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=77.70 E-value=1.3 Score=33.45 Aligned_cols=46 Identities=15% Similarity=0.403 Sum_probs=39.2
Q ss_pred HHHHHHhCCCCcccHHHHHHHh-----cceeeehhhhHHhhhhccceeccc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+++|...+++.+.+.++++.| +|.+=-+|=+++.|+..|+|.+..
T Consensus 22 IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 22 ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 5566655443689999999999 899999999999999999999873
No 54
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=77.57 E-value=2.9 Score=33.13 Aligned_cols=45 Identities=9% Similarity=0.274 Sum_probs=37.4
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
.+.++. ++.+.+.++|+.|++.+--++-.++.|+..|+|++...+
T Consensus 31 IL~~L~---~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 31 IMELLS---VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp HHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 445554 355899999999999999999999999999999876443
No 55
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=77.29 E-value=2.2 Score=34.66 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCe
Q 015878 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNH 188 (399)
Q Consensus 139 kFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~ 188 (399)
+.+.++. ++.+.+.++|+.|++.+--++-.+++|+..|||++.....
T Consensus 22 ~Il~~L~---~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr 68 (118)
T 3f6o_A 22 AVLGRLS---RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGR 68 (118)
T ss_dssp HHHHHHH---TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHH---hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCC
Confidence 3455555 3678999999999999999999999999999998764443
No 56
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=76.80 E-value=8.3 Score=32.72 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=32.8
Q ss_pred cccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.+.++|+.|++.+--++-+++-||.-|||++.
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEec
Confidence 5899999999999999999999999999999997
No 57
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=76.45 E-value=2.2 Score=33.06 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=41.1
Q ss_pred CCcHHHHHHHHHHHHHhCCCC-cccHHHHHHHhcceeee-hhhhHHhhhhcccee
Q 015878 130 DSSLGLLTRKFINLIQEAKDG-TLDLNRTAEVLEVQKRR-IYDITNVLEGIGLIE 182 (399)
Q Consensus 130 dkSLglLTkkFI~Ll~~ap~g-~ldLn~aA~~L~VqKRR-IYDItNVLEgIgLIe 182 (399)
...++.+.+-|.-|+.-...+ .+.+.++|+.|++.+=- ++-+++.||.-|+|+
T Consensus 8 ~~~~g~~~~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 8 RLQFGHLIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp GSBHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 345676666554433222233 68999999999999999 999999999999999
No 58
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=76.37 E-value=10 Score=30.00 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=33.0
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+.+...++|+.|++.+--++-+++-||.-|+|++.
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 36899999999999999999999999999999986
No 59
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.37 E-value=4.9 Score=31.98 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=33.1
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+.+.+.++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 35899999999999999999999999999999987
No 60
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=76.05 E-value=2.9 Score=35.17 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=33.0
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+.+.+.++|+.|++.+--++-+++-||.-|||+|.
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 45899999999999999999999999999999986
No 61
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=75.56 E-value=6.5 Score=30.28 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=34.2
Q ss_pred CCcccHHHH----HHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 149 DGTLDLNRT----AEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 149 ~g~ldLn~a----A~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
.+.+...++ |+.|++.+--++-+++-||.-|||++....
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~ 62 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQER 62 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 456788888 899999999999999999999999987433
No 62
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=75.54 E-value=5.2 Score=32.16 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=35.6
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+.++. .++ +...++|+.|++.|=-+.-+++.||.-|||++..
T Consensus 43 iL~~l~--~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 43 ILMLLS--EES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHT--TCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHH--hCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 444444 344 9999999999999999999999999999999974
No 63
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=75.47 E-value=18 Score=32.68 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=36.8
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+.++.. +.+...++|+.|++.+--+|-.++.|+.-|||++..
T Consensus 20 IL~~L~~---~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 20 ILFLLTK---RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHHH---SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEe
Confidence 4455543 568999999999999999999999999999999853
No 64
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=75.37 E-value=3.6 Score=38.49 Aligned_cols=53 Identities=13% Similarity=0.320 Sum_probs=40.5
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEEecC
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGS 194 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~G~ 194 (399)
.+++|...+ +.+.+.++|+.|++.|=-+|-|++.|+..|++++.....| ..|.
T Consensus 35 IL~~l~~~~-~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y-~LG~ 87 (275)
T 3mq0_A 35 ILDLVAGSP-RDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSADGTL-RIGP 87 (275)
T ss_dssp HHHHHHHCS-SCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTTSEE-EECT
T ss_pred HHHHHhhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCcE-EehH
Confidence 455565554 5699999999999999999999999999999999864333 3453
No 65
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=75.18 E-value=2.9 Score=36.76 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccc-eecccCCeeEEec
Q 015878 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGL-IEKTSKNHIRWKG 193 (399)
Q Consensus 138 kkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgL-IeK~sKN~i~W~G 193 (399)
.+.+.+|++. ++.+...++|+.|+|++|-||-=++.|+..|+ |.+. ..-|.+..
T Consensus 24 ~~Il~~L~~~-~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~-~~Gy~l~~ 78 (187)
T 1j5y_A 24 KSIVRILERS-KEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT-PRGYVLAG 78 (187)
T ss_dssp HHHHHHHHHC-SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEE-TTEEECCT
T ss_pred HHHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-CCEEEECC
Confidence 3455666643 34599999999999999999999999999999 8764 34455543
No 66
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=75.09 E-value=14 Score=30.20 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=32.8
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+.+...++|+.|++.+--+.-+++-||.-|||++.
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeC
Confidence 66899999999999999999999999999999997
No 67
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=74.68 E-value=2.4 Score=33.90 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=34.8
Q ss_pred CCcccHHHHHHHh-cceeeehhhhHHhhhhccceeccc
Q 015878 149 DGTLDLNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 149 ~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
++.+.+.++|+.| ++.+..++..++.||.-|||+|..
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEee
Confidence 5779999999999 999999999999999999999874
No 68
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=74.65 E-value=1.1 Score=36.52 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=35.3
Q ss_pred CCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 147 AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 147 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
...+.+...++|+.|++.+--+.-+++-||.-|+|+|.
T Consensus 46 ~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 46 ENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp CTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEec
Confidence 34668999999999999999999999999999999997
No 69
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=73.97 E-value=14 Score=29.79 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=33.0
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+.+...++|+.|++.+--++-+++.||.-|+|++.
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 46899999999999999999999999999999986
No 70
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=73.76 E-value=14 Score=29.72 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=32.9
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.++... +.+...++|+.|++.+=-+.-+++-||.-|||++.
T Consensus 42 vL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 42 VLKLIDEQ--RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp HHHHHHHT--TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeec
Confidence 34444443 46899999999999999999999999999999997
No 71
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=73.75 E-value=4.7 Score=32.96 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=36.7
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
.+.++.. .+.+.+.++|+.|++.+--++-.++.|+..|||++...+
T Consensus 47 IL~~L~~--~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~g 92 (122)
T 1u2w_A 47 ITYALCQ--DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEG 92 (122)
T ss_dssp HHHHHHH--SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---
T ss_pred HHHHHHH--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4445543 456899999999999999999999999999999876443
No 72
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=73.30 E-value=3.9 Score=31.90 Aligned_cols=45 Identities=13% Similarity=0.297 Sum_probs=37.3
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
.+.++.. +.+.+.++|+.|++.+-.++-.+..|+..|||++....
T Consensus 28 Il~~L~~---~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (102)
T 3pqk_A 28 LVCTLVE---GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNI 72 (102)
T ss_dssp HHHHHHT---CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSS
T ss_pred HHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3444532 56899999999999999999999999999999876443
No 73
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=73.17 E-value=10 Score=34.50 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=41.7
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEEecC
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGS 194 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~G~ 194 (399)
.+++|... ++.+.+.++|+.+++.|=-+|-+++.|+..|+|++...+.-...|.
T Consensus 11 iL~~l~~~-~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~ 64 (241)
T 2xrn_A 11 IMRALGSH-PHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFRLGP 64 (241)
T ss_dssp HHHHHHTC-TTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEEEECS
T ss_pred HHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeEEECH
Confidence 44555443 3468999999999999999999999999999999975422223453
No 74
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=72.92 E-value=3.8 Score=32.64 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=33.7
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
+.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 458999999999999999999999999999999874
No 75
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=72.40 E-value=5 Score=32.04 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=49.6
Q ss_pred CCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEEe
Q 015878 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK 192 (399)
Q Consensus 130 dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~ 192 (399)
|.....+.+++|..|. +++.+..+.+|.+||+.|+-|==++.-|+.=|.|.+...+--.|.
T Consensus 10 ~~~~~~~v~~~i~~L~--~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP~W~ 70 (75)
T 1sfu_A 10 DAEIFSLVKKEVLSLN--TNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWF 70 (75)
T ss_dssp SHHHHHHHHHHHHTSC--TTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCEEE
T ss_pred hHHHHHHHHHHHHhCC--CCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCCCCCcc
Confidence 3344555666666443 455599999999999999999999999999999999999999995
No 76
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=72.07 E-value=2.3 Score=35.49 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=40.3
Q ss_pred HHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 141 INLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 141 I~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
+.++...+++.+...++|+.|++.|=.+--+++-||.-|||+|..
T Consensus 41 L~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 41 LVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp HHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 445566788899999999999999999999999999999999983
No 77
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=71.90 E-value=7.9 Score=32.06 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=33.7
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
+.+.+.++|+.|++.+=-+.-+++-||.-|||+|..
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 478999999999999999999999999999999973
No 78
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=71.75 E-value=5.8 Score=27.49 Aligned_cols=29 Identities=10% Similarity=0.318 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015878 202 LDDQVARLKAEIESLHAEECRIDDSIREK 230 (399)
Q Consensus 202 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~ 230 (399)
...+.+..+++|++|+.+-..|+++|+++
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 44567788999999999999999999875
No 79
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=71.34 E-value=3.4 Score=34.48 Aligned_cols=47 Identities=13% Similarity=0.311 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 136 LTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+-++.+.+++.. +.+...++|+.|++.+..+...++-|+.-|+|.+.
T Consensus 6 ~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKD--SRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHC--SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 345778888653 67999999999999999999999999999999874
No 80
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=70.07 E-value=3.5 Score=32.40 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=39.3
Q ss_pred HHHHHHHHhC----CCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 138 RKFINLIQEA----KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 138 kkFI~Ll~~a----p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
++.+++++.. .++.+.+.++|+.|+|+.--+..-++.||.-|+|.+.
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 3455555543 4688999999999999888899999999999999987
No 81
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=70.01 E-value=1.9 Score=36.71 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=45.4
Q ss_pred CCCCCCcHHHHHHHH----HHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 126 GCRYDSSLGLLTRKF----INLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 126 ~~R~dkSLglLTkkF----I~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.|-....|..+..++ +..+. .+.+.+.++++.|++.+.-+...++.||.-|||+|..
T Consensus 11 ~c~~~~~l~~l~~~w~l~IL~~L~---~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 11 SCPVARPLDVIGDGWSMLIVRDAF---EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp SCTTTTTHHHHCSSSHHHHHHHHH---TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHhCCchHHHHHHHHH---hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 455566788776543 22332 4678999999999999999999999999999999984
No 82
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=69.51 E-value=11 Score=32.38 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=27.4
Q ss_pred cccHHHHHHHhcceee--ehhhhHHhhhhcccee--cccCCeeEEec
Q 015878 151 TLDLNRTAEVLEVQKR--RIYDITNVLEGIGLIE--KTSKNHIRWKG 193 (399)
Q Consensus 151 ~ldLn~aA~~L~VqKR--RIYDItNVLEgIgLIe--K~sKN~i~W~G 193 (399)
.+.+.++|+.+||..+ |.| |.+|||. +...|.|+.-+
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Y------e~~Gll~p~~r~~~g~R~Y~ 56 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYY------DKQGLFPFLQRNEKGDRIFN 56 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHH------HHTTCCTTCEECTTCCEEBC
T ss_pred ceeHHHHHHHHCcCHHHHHHH------HHCCCCCCCcCCCCCCeecC
Confidence 5889999999999887 445 6778884 44556666644
No 83
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=69.44 E-value=7.8 Score=31.57 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=33.9
Q ss_pred CCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 148 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
..+.+.+.++|+.|++.+=.+.-+++-||.-|+|++.
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4567999999999999999999999999999999984
No 84
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=69.16 E-value=3.6 Score=38.02 Aligned_cols=55 Identities=25% Similarity=0.422 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHH-hhhhccceecccCC
Q 015878 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITN-VLEGIGLIEKTSKN 187 (399)
Q Consensus 133 LglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItN-VLEgIgLIeK~sKN 187 (399)
|..+-++++..+....++.+.+..+|+.|++.++.+|+.+. .|...|||.+..+.
T Consensus 261 l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 261 FDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKG 316 (338)
T ss_dssp CCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTE
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCc
Confidence 44455778877665566789999999999999999999999 99999999887554
No 85
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=68.39 E-value=3.5 Score=35.68 Aligned_cols=45 Identities=22% Similarity=0.227 Sum_probs=40.1
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.++...+++.+.+.++|+.|++.+=.+.-+++-||.-|||++.
T Consensus 46 vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 90 (189)
T 3nqo_A 46 TILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVI 90 (189)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 445566667789999999999999999999999999999999997
No 86
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=68.32 E-value=3.8 Score=34.16 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 133 LglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
|..+-++.+.+++. ++.+...++|+.||+++..+...++-|+.-|+|.+.
T Consensus 7 ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 7 LDRVDMQLVKILSE--NSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34455678888875 467999999999999999999999999999999864
No 87
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=68.04 E-value=4 Score=32.46 Aligned_cols=59 Identities=19% Similarity=0.361 Sum_probs=43.8
Q ss_pred CCCCCCcHHHHHHHH--HHHHHhCCCCcccHHHHHHHhc-ceeeehhhhHHhhhhccceeccc
Q 015878 126 GCRYDSSLGLLTRKF--INLIQEAKDGTLDLNRTAEVLE-VQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 126 ~~R~dkSLglLTkkF--I~Ll~~ap~g~ldLn~aA~~L~-VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.|.....|..+..++ .-|..-. .+.+...++++.|+ +.+..++-.++.||.-|||++..
T Consensus 12 ~c~~~~~l~~l~~~~~~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 12 ECPVRKSMQIFAGKWTLLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp TCHHHHHHHHHTSSSHHHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHcCccHHHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEee
Confidence 455555566666442 1111112 57799999999995 99999999999999999999874
No 88
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=67.26 E-value=35 Score=28.43 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=40.5
Q ss_pred HHHHHHHHh---CCCCcc-cHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 138 RKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 138 kkFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
..+...+.. .|+..+ ...++|+.|+|+|--+-..++.|+.-|||+.....
T Consensus 11 ~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~ 64 (129)
T 2ek5_A 11 SLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGI 64 (129)
T ss_dssp HHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCC
Confidence 344444433 467777 89999999999999999999999999999987554
No 89
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=67.25 E-value=3.8 Score=33.44 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=32.2
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+.+.+.++|+.|++.+=-+.-+++-||.-|||+|.
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 34899999999999999999999999999999996
No 90
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=66.91 E-value=4.4 Score=33.90 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 134 glLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
..+-++.+.+|+.. +.+.+.++|+.||+++..++..++-|+.-|+|.+.
T Consensus 7 d~~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 7 DNLDRGILEALMGN--ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp CHHHHHHHHHHHHC--TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceE
Confidence 34456778888754 67999999999999999999999999999999974
No 91
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=66.77 E-value=3.2 Score=33.94 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=33.9
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+.+...++|+.|++.+--+.-+++-||.-|+|++..
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 3468999999999999999999999999999999973
No 92
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=66.66 E-value=14 Score=32.70 Aligned_cols=57 Identities=9% Similarity=0.056 Sum_probs=43.4
Q ss_pred CcHHHHH-HHHHHHHH---hCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 131 SSLGLLT-RKFINLIQ---EAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 131 kSLglLT-kkFI~Ll~---~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
.++.... ....+.+. -.|+..+.-.++|+.|||+|=-+=+.+..|+.-|||+.....
T Consensus 15 ~~~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~~ 75 (222)
T 3ihu_A 15 GSASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHR 75 (222)
T ss_dssp -CHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTT
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 4454433 34444443 247888999999999999999999999999999999976443
No 93
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=66.46 E-value=3.2 Score=33.82 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 139 kFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
+.+.+|.. +.+.+.++|+.|++.+--++-.++.|+..|||++..
T Consensus 25 ~IL~~L~~---~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 25 RILVALLD---GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHHHHHT---TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE
Confidence 34555553 457889999999999999999999999999998763
No 94
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=66.28 E-value=4.8 Score=32.42 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHh
Q 015878 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNV 174 (399)
Q Consensus 136 LTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNV 174 (399)
+..++++++.......++|.++|+.+++.+|.|+-++.-
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 568899999998888999999999999999998877654
No 95
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=65.94 E-value=5.9 Score=32.35 Aligned_cols=37 Identities=16% Similarity=0.403 Sum_probs=34.3
Q ss_pred CCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 148 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
..+.+...++|+.|++.+--++-+++-||.-|+|++.
T Consensus 54 ~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp SCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 3557899999999999999999999999999999987
No 96
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=65.86 E-value=4.2 Score=32.68 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=33.8
Q ss_pred CcccHHHHHHHh-cceeeehhhhHHhhhhccceeccc
Q 015878 150 GTLDLNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 150 g~ldLn~aA~~L-~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
+.+...++|+.| ++.+--++.+++.||.-|||++..
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEee
Confidence 568999999999 999999999999999999999874
No 97
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=65.83 E-value=2.6 Score=35.35 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=46.0
Q ss_pred CCCCCCcHHHHHHHHH-HHHHhCCCCcccHHHHHHHh-cceeeehhhhHHhhhhccceeccc
Q 015878 126 GCRYDSSLGLLTRKFI-NLIQEAKDGTLDLNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 126 ~~R~dkSLglLTkkFI-~Ll~~ap~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.|.....|..+..++- .+|..-..+.+...++++.| ++.+.-+...++.||.-|||+|..
T Consensus 22 ~c~~~~~l~~l~~~w~l~IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 22 QCPSREVLKHVTSRWGVLILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp TCTHHHHHHHHHSHHHHHHHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 4555666777776542 22221125779999999999 799999999999999999999874
No 98
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=65.73 E-value=4.8 Score=32.90 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 138 kkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.+.+++. ++.+...++|+.|++++.-++..++-|+.-|+|.+.
T Consensus 7 ~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEK--DARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 456677764 456799999999999999999999999999999876
No 99
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=65.49 E-value=4.6 Score=31.82 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhc
Q 015878 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGI 178 (399)
Q Consensus 136 LTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgI 178 (399)
+..++++++.......+++.++|+.+++++|.|+-++.-.-|+
T Consensus 6 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~ 48 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGE 48 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 4577888888888888999999999999999999887654443
No 100
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=65.46 E-value=12 Score=34.46 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=35.7
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
++.+.+.++|+.|++.|--+|-+++.|+..|+|++....
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~ 74 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADG 74 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTS
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCC
Confidence 457999999999999999999999999999999997554
No 101
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=65.31 E-value=5 Score=30.20 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHhc----ceeeehhhhHHhhhhccceeccc
Q 015878 138 RKFINLIQEAKDGTLDLNRTAEVLE----VQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 138 kkFI~Ll~~ap~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIgLIeK~s 185 (399)
..++.+|.. .+.+...++++.|+ +.+=-+|-+++.|+.-|+|++..
T Consensus 12 ~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 445666655 56799999999998 46778999999999999999874
No 102
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=64.97 E-value=17 Score=29.97 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=33.6
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
+.+...++|+.|+|.+=-+--+++.||.-|||++...
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 89 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW 89 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 4578999999999999999999999999999998744
No 103
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=64.92 E-value=5.4 Score=33.28 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 134 glLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
...-.+.+.+|+. ++.+...++|+.|++.+.-++..++-||.-|+|.+.
T Consensus 6 d~~~~~iL~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 6 DDIDRILVRELAA--DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp CHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3344577777764 467999999999999999999999999999999764
No 104
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=64.86 E-value=4.6 Score=37.44 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=37.8
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEE
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W 191 (399)
+.+.+.++|+++++..|+++-+..+|.++|++++...+.|.-
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~ 81 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYAN 81 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEec
Confidence 679999999999999999999999999999999886666554
No 105
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=64.74 E-value=5 Score=34.00 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 133 LglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
|...-++.+.+|+. ++.+...++|+.|++++..++..++-|+.-|+|.+.
T Consensus 8 ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 8 LDKTDIKILQVLQE--NGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 44455678888875 456899999999999999999999999999999974
No 106
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=64.69 E-value=17 Score=30.15 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=41.7
Q ss_pred HHHHHHHHHHh---CCCCcc-cHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 136 LTkkFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
+...+...+.. .++..+ ...++|+.|+|++--+-..++.|+.-|+|++....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~ 71 (126)
T 3by6_A 16 LVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGK 71 (126)
T ss_dssp HHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 33444455543 467778 99999999999999999999999999999987554
No 107
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=64.46 E-value=6.5 Score=35.78 Aligned_cols=45 Identities=20% Similarity=0.405 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 139 kFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+.+++|... ++.+.+.++|+.|++.|=-+|-+++.|+..|+|++.
T Consensus 12 ~iL~~l~~~-~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 12 EILDFIVKN-PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHHC-SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 345555543 346899999999999999999999999999999997
No 108
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=64.42 E-value=8.4 Score=35.83 Aligned_cols=42 Identities=7% Similarity=0.142 Sum_probs=36.0
Q ss_pred HHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceec
Q 015878 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (399)
Q Consensus 139 kFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK 183 (399)
+.+.++.. +.+...++|+.|++.+--++-.+++|+.-|||+.
T Consensus 16 ~IL~~L~~---g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 16 DLLSHLTC---MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHTT---TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 34555642 5688889999999999999999999999999997
No 109
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=64.41 E-value=4.6 Score=32.62 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=36.1
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.++...++ .+.++|+.|++.+=-+.-+++-||.-|+|++.
T Consensus 42 iL~~l~~~~~---~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~ 83 (144)
T 3f3x_A 42 ILKATSEEPR---SMVYLANRYFVTQSAITAAVDKLEAKGLVRRI 83 (144)
T ss_dssp HHHHHHHSCE---EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCC---CHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 4444555443 99999999999999999999999999999987
No 110
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=64.08 E-value=6 Score=31.43 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhh
Q 015878 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEG 177 (399)
Q Consensus 135 lLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEg 177 (399)
.+..++++++.......++|.++|+.+++.+|.|+-++.-.-|
T Consensus 7 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G 49 (113)
T 3oio_A 7 PKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLG 49 (113)
T ss_dssp HHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 3567889999998888899999999999999999988765443
No 111
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=63.63 E-value=7.7 Score=33.36 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=40.4
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEEe
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK 192 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~ 192 (399)
.+.+|. .+.+.+.++|+.|++.+--++-.+.+|+..|||++....+..+.
T Consensus 63 IL~~L~---~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y 112 (151)
T 3f6v_A 63 LVQLLT---SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYY 112 (151)
T ss_dssp HHHHGG---GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEE
Confidence 445554 46689999999999999999999999999999998755544443
No 112
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=63.56 E-value=25 Score=29.11 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=40.9
Q ss_pred HHHHHHHHHHh---CCCCcc-cHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 136 LTkkFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
+...+.+.+.. .|+..+ ...++|+.|+|+|=-+-..+..|+.-|||+....
T Consensus 19 I~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g 73 (134)
T 4ham_A 19 IVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKG 73 (134)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 44555555543 467777 8999999999999999999999999999987643
No 113
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=63.52 E-value=6.2 Score=36.78 Aligned_cols=49 Identities=16% Similarity=0.336 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 136 LTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
...+.+.++... +.+.+.++|+.|++.|--++-+++.|+.-|+|++...
T Consensus 153 ~~~~IL~~L~~~--~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r 201 (244)
T 2wte_A 153 EEMKLLNVLYET--KGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGK 201 (244)
T ss_dssp HHHHHHHHHHHH--TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 445566666543 4589999999999999999999999999999999744
No 114
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=62.92 E-value=7.1 Score=31.33 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 138 kkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
..++.++.++.+.-++..++|+++++.+.-+-=|+.-||.-|||.+.
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 45667777766667999999999999999999999999999999943
No 115
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=62.53 E-value=5.5 Score=33.33 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 134 glLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
..+-++.+.+|+.. +.+...++|+.|++++.-+...++-|+.-|+|.+.
T Consensus 6 d~~~~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 6 DEIDKKIIKILQND--GKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CHHHHHHHHHHHHC--TTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred CHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34456778888754 57999999999999999999999999999999874
No 116
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=62.38 E-value=14 Score=30.75 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=31.0
Q ss_pred CeeEEecCCCCCCc-------chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 015878 187 NHIRWKGSDSLGTS-------KLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (399)
Q Consensus 187 N~i~W~G~~~s~~~-------~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lt 238 (399)
+-+.|.|.+..-.. .+..++..|+..++.|......+-+.|..+.+.|+++.
T Consensus 71 ~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 71 EVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899997532111 23344555566666666666666666666666666654
No 117
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=62.13 E-value=4.2 Score=37.85 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=42.5
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEEe
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK 192 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~ 192 (399)
..+.+. ++.+.+.++|+++++..|.++-+..+|.++|++++..+..|.-.
T Consensus 30 lf~~l~---~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~t 79 (332)
T 3i53_A 30 VADHIA---AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLT 79 (332)
T ss_dssp HHHHHH---TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEEC
T ss_pred hHHHHh---cCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEcC
Confidence 445554 36899999999999999999999999999999999877766653
No 118
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=62.10 E-value=7.7 Score=32.89 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 139 kFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
+.+-+|...+++.+.+.++|+.++|..+-+..|+..|...|||+...
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~r 64 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNR 64 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEcc
Confidence 33444444466789999999999999999999999999999998653
No 119
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=61.70 E-value=6 Score=31.07 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhh
Q 015878 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEG 177 (399)
Q Consensus 136 LTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEg 177 (399)
+..+.++++.......+++.++|+.+++.+|.|+-++.-.-|
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G 44 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRG 44 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 456788888888888899999999999999999988775443
No 120
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=61.63 E-value=5.9 Score=32.65 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=33.8
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
+.+.+.++|+.|++.+--++-.++.||..|+|.+...
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999999999999999999999987643
No 121
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=60.44 E-value=5.8 Score=31.17 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 138 kkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.+++++. .+.+.+.++|+.|+|+.=-|--.++.||.-|+|+|.
T Consensus 5 ~~Il~~L~~--~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLAL--RGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHH--SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 455667764 578999999999999887777789999999999998
No 122
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=59.46 E-value=27 Score=29.97 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=22.6
Q ss_pred cccHHHHHHHhcceee--ehhhhHHhhhhccceec--ccCCeeEE
Q 015878 151 TLDLNRTAEVLEVQKR--RIYDITNVLEGIGLIEK--TSKNHIRW 191 (399)
Q Consensus 151 ~ldLn~aA~~L~VqKR--RIYDItNVLEgIgLIeK--~sKN~i~W 191 (399)
.+.+.++|+.+||..+ |.| |..|||.- ...|.++.
T Consensus 4 ~~tI~evA~~~Gvs~~tLR~y------e~~GLl~p~~r~~~g~R~ 42 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALRYY------DKINLLKPSDYTEGGHRL 42 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHHHH------HHTTSSCCSEECTTSCEE
T ss_pred CCcHHHHHHHHCcCHHHHHHH------HHCCCCCCCeECCCCCEe
Confidence 4678899999998776 455 45566632 23454554
No 123
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=59.31 E-value=7.1 Score=33.25 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=45.4
Q ss_pred CCCCCCcHHHHHHH--HHHHHHhCCCCcccHHHHHHHh-cceeeehhhhHHhhhhccceeccc
Q 015878 126 GCRYDSSLGLLTRK--FINLIQEAKDGTLDLNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 126 ~~R~dkSLglLTkk--FI~Ll~~ap~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.|-....|.+|..| ++-|..-. .|...++++++.| ++.++-+...+..||.-|||+|..
T Consensus 13 ~Cpi~~~l~~lg~kW~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~ 74 (131)
T 4a5n_A 13 GSPVEFTLDVIGGKWKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREV 74 (131)
T ss_dssp CCHHHHHHHHHCSSSHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHHcCcCHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 34445566666644 32222223 6889999999999 999999999999999999999984
No 124
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=59.30 E-value=40 Score=28.06 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=31.4
Q ss_pred cccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+...++|+.|++.+=.+--+++-||.-|||+|.
T Consensus 46 ~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~ 79 (151)
T 4aik_A 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRH 79 (151)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEee
Confidence 4567899999999999999999999999999987
No 125
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=58.42 E-value=7.7 Score=33.72 Aligned_cols=50 Identities=26% Similarity=0.368 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 133 LglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
|..+-++.+.+++. ++.+...++|+.|++++--+...++-|+.-|+|.+.
T Consensus 15 ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 15 LDDLDRNILRLLKK--DARLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 44555688888875 357999999999999999999999999999999864
No 126
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=58.40 E-value=6.9 Score=32.46 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 138 kkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.+.+++ .++.+...++|+.|++.+--+...++.|+.-|+|++.
T Consensus 6 ~~il~~L~--~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 6 LRILKILQ--YNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHT--TCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 45666665 3567999999999999999999999999999999973
No 127
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=58.37 E-value=8.8 Score=35.36 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=39.4
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEEecCC
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSD 195 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~G~~ 195 (399)
++.+.+.++|+.+++.|=-+|-+++.|+..|+|++.....-...|..
T Consensus 19 ~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~ 65 (260)
T 3r4k_A 19 RLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYRLGPQ 65 (260)
T ss_dssp BSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEEECTT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHH
Confidence 46899999999999999999999999999999999865332334643
No 128
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=58.33 E-value=4.9 Score=37.01 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=36.6
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEE
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W 191 (399)
++.+.+.++|+++++..|+++-+..+|.++|++++. .+.|.-
T Consensus 37 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~-~~~y~~ 78 (335)
T 2r3s_A 37 QGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ-AEGYRL 78 (335)
T ss_dssp TSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEE
T ss_pred cCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec-CCEEec
Confidence 378999999999999999999999999999999874 455543
No 129
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=57.87 E-value=9.6 Score=33.22 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 138 kkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
-+.+.+|...+++.+...++|+.+++.+.-+.-|+..|..-|||+-.
T Consensus 15 lr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 15 VHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 34455555566788999999999999999999999999999999765
No 130
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=57.78 E-value=6.5 Score=31.77 Aligned_cols=46 Identities=13% Similarity=0.277 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 138 kkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+.+++++. .|.+.+.++|+.|+|+.=-|--.++.||.-|+|.|..
T Consensus 5 ~~Il~~L~~--~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLAL--QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHH--SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 345666664 5799999999999998877777899999999999984
No 131
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=57.63 E-value=14 Score=29.06 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHh---CCCCcc-cHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 133 LGLLTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 133 LglLTkkFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
...+...+...+.. .++..+ ...++|+.|+|++=-+...++.|+.-|+|++....
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g~ 71 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGAL 71 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTT
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 34455555554433 356677 99999999999999999999999999999987543
No 132
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=57.49 E-value=15 Score=29.66 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=41.8
Q ss_pred HHHHHHHHHHh---CCCCcc-cHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 136 LTkkFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
+...+...+.. .++..+ ...++|+.|+|++--+-..++.|+.-|+|+.....
T Consensus 14 i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~ 69 (113)
T 3tqn_A 14 LRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGL 69 (113)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 44455555543 466677 89999999999999999999999999999987544
No 133
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=57.18 E-value=11 Score=34.41 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=41.7
Q ss_pred HHHHHHHHh--CCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEEecC
Q 015878 138 RKFINLIQE--AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGS 194 (399)
Q Consensus 138 kkFI~Ll~~--ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~G~ 194 (399)
.|-+.+|.. ..++.+.+.++|+.+++.|=-+|-+++.|+..|+|++.. ..|+ .|.
T Consensus 14 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~~-~~Y~-Lg~ 70 (257)
T 2g7u_A 14 ERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSG-GRWS-LTP 70 (257)
T ss_dssp HHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEE-ECG
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC-CEEE-EcH
Confidence 344444432 234678999999999999999999999999999999974 4443 443
No 134
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=56.93 E-value=8.3 Score=29.97 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCC-cccHHHHHHHhcceeeehhhhHHhhhh
Q 015878 136 LTRKFINLIQEAKDG-TLDLNRTAEVLEVQKRRIYDITNVLEG 177 (399)
Q Consensus 136 LTkkFI~Ll~~ap~g-~ldLn~aA~~L~VqKRRIYDItNVLEg 177 (399)
+..++++++.+.... .+++.++|+.+++.+|.|+-++.-.-|
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g 45 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFG 45 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 456777888776655 899999999999999999887765444
No 135
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=56.71 E-value=5.4 Score=37.63 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=37.8
Q ss_pred CCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEE
Q 015878 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (399)
Q Consensus 148 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W 191 (399)
.++.+.+.++|+++++..|.++-+..+|.++|++++ ..+.|.=
T Consensus 52 ~~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~-~~~~y~~ 94 (348)
T 3lst_A 52 VDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE-SDGRFAL 94 (348)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEE
T ss_pred hCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe-cCCEEec
Confidence 457899999999999999999999999999999999 5565544
No 136
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=56.45 E-value=32 Score=31.14 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=42.2
Q ss_pred HHHHHHHHHHh---CCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 136 LTRKFINLIQE---AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 136 LTkkFI~Ll~~---ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
+...+.+.+.. .|+..+...++|+.|||+|=-|-..++.|+.-|||+....
T Consensus 31 v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~ 84 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETH 84 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 44555544433 5788899999999999999999999999999999998844
No 137
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=55.50 E-value=16 Score=32.14 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=37.3
Q ss_pred CCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 147 AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 147 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
.|+..+.-.++|+.|||+|=-+=+.+..|+.-|||+.....
T Consensus 31 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~ 71 (218)
T 3sxy_A 31 KLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRV 71 (218)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTT
T ss_pred CCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 47888999999999999999999999999999999977443
No 138
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=55.43 E-value=8.9 Score=33.39 Aligned_cols=50 Identities=24% Similarity=0.407 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 133 LglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
|..+-++++.+|+. ++.+.+.++|+.|++.+.-+...++-|+.-|+|++.
T Consensus 25 ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 25 LDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 45566788888875 467999999999999999999999999999999874
No 139
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=54.84 E-value=7.2 Score=31.85 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhh
Q 015878 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEG 177 (399)
Q Consensus 135 lLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEg 177 (399)
.+..++++++.+.....++|.++|+.+++.+|.|+-++.-.-|
T Consensus 11 ~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G 53 (129)
T 1bl0_A 11 ITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETG 53 (129)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 4678899999988888899999999999999999888764433
No 140
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=54.75 E-value=5.4 Score=38.10 Aligned_cols=44 Identities=11% Similarity=0.280 Sum_probs=38.7
Q ss_pred CCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCe-eEE
Q 015878 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNH-IRW 191 (399)
Q Consensus 148 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~-i~W 191 (399)
.++.+.+.++|+++++..|.++-+..+|.++|++++...+. |.-
T Consensus 68 ~~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~y~~ 112 (369)
T 3gwz_A 68 QEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQ 112 (369)
T ss_dssp TTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEEC
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCceEec
Confidence 46789999999999999999999999999999999976665 443
No 141
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=54.38 E-value=42 Score=28.61 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 015878 204 DQVARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (399)
Q Consensus 204 ~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lte 239 (399)
.++++||+|+++++.+.++|-+.-..-.+..|+...
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~ 39 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACY 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999998887776666666553
No 142
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=54.31 E-value=12 Score=29.80 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc--cCCeeEEec
Q 015878 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT--SKNHIRWKG 193 (399)
Q Consensus 136 LTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~--sKN~i~W~G 193 (399)
+.+.||++++.. .++.|.++|..+++..--.-|=++-||..|.|.=. .+.+|.++.
T Consensus 8 ll~~Fi~yIk~~--Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 8 FLTEFINYIKKS--KVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHHHHC--SEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHHHHc--CeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 448999999976 49999999999999766566667778877776544 234455544
No 143
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=54.20 E-value=12 Score=29.43 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCC-CcccHHHHHHHhcceeeehhhhHHhhh
Q 015878 136 LTRKFINLIQEAKD-GTLDLNRTAEVLEVQKRRIYDITNVLE 176 (399)
Q Consensus 136 LTkkFI~Ll~~ap~-g~ldLn~aA~~L~VqKRRIYDItNVLE 176 (399)
...+.++++.+... ..+++.++|+.+++++|.|.-++.-.-
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 45 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQL 45 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45678888888887 899999999999999999988776443
No 144
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=54.04 E-value=8 Score=32.17 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=33.1
Q ss_pred cccHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
-+...++|+.+++..+-+..+++-||.-|+|++...
T Consensus 51 ~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 51 FPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp SCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 379999999999999999999999999999999744
No 145
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=53.25 E-value=20 Score=28.84 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=42.6
Q ss_pred CCCcHHHHHHH--HHHHHHhCCCCccc--HHHHHHHh-cceeeehhhhHHhhhhccceecccC
Q 015878 129 YDSSLGLLTRK--FINLIQEAKDGTLD--LNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 129 ~dkSLglLTkk--FI~Ll~~ap~g~ld--Ln~aA~~L-~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
....|..|..+ +.-+..-. .|... ..++++.| ++.+..+.-.+..||.-|||+|...
T Consensus 17 ~~~~l~~l~~~wrl~IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 17 SESVLHLLGKKYTMLIISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp TSSTHHHHHSTTHHHHHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHcCccHHHHHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 35567777644 22222222 45656 99999999 9999999999999999999999854
No 146
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=53.24 E-value=7.1 Score=36.67 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=39.5
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCC--eeEE
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN--HIRW 191 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN--~i~W 191 (399)
.++.|. ++.+.+.++|+++++..+.++-+..+|..+|++++...+ .|.-
T Consensus 41 i~~~l~---~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~ 91 (374)
T 1qzz_A 41 LVDHLL---AGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRP 91 (374)
T ss_dssp HHHHHH---TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEE
T ss_pred hHHHHh---CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCCCeEEEE
Confidence 445553 367999999999999999999999999999999986555 4444
No 147
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=53.09 E-value=4.4 Score=32.29 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=32.8
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+.+...++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 35789999999999999999999999999999986
No 148
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=52.49 E-value=48 Score=27.16 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=41.8
Q ss_pred HHHHHHHHHHh---CCCCcc-cHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 136 LTkkFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
+...+...+.. .|+..+ ...++|+.|+|++=-+-..+..|+.-|+|++....
T Consensus 18 i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~ 73 (125)
T 3neu_A 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125)
T ss_dssp HHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCC
Confidence 44555555543 467777 59999999999999999999999999999987544
No 149
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=51.22 E-value=74 Score=26.57 Aligned_cols=49 Identities=8% Similarity=0.174 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 135 lLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
..+-+.+-+|-..+++ .+.++|+.+++..+-+..|+.-|..-|||+-..
T Consensus 9 ~yAl~~L~~La~~~~~--s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~r 57 (145)
T 1xd7_A 9 AVAIHILSLISMDEKT--SSEIIADSVNTNPVVVRRMISLLKKADILTSRA 57 (145)
T ss_dssp HHHHHHHHHHHTCSCC--CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCS
T ss_pred HHHHHHHHHHHhCCCC--CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeec
Confidence 3344444455444553 999999999999999999999999999998653
No 150
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=50.93 E-value=32 Score=27.60 Aligned_cols=76 Identities=12% Similarity=0.250 Sum_probs=39.6
Q ss_pred HHhcceeeehhhhHHhhhhccceecccCCeeEEecCCCCC-C-----cchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015878 159 EVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLG-T-----SKLDDQVARLKAEIESLHAEECRIDDSIREKQE 232 (399)
Q Consensus 159 ~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~G~~~s~-~-----~~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q 232 (399)
..|..+++++-++.+-|+.+. ...+.|+=+|.-... + ..+...+..+..+++.|..+...+...+..++.
T Consensus 30 ~~l~~~~~e~~~~~~eL~~l~----~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 30 QKVQLELTEAKKALDEIESLP----DDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTSC----TTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC----CCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566655555555543 234467667743211 1 122333444555556666666666666666666
Q ss_pred HHHHHh
Q 015878 233 LIRTLE 238 (399)
Q Consensus 233 ~Lr~Lt 238 (399)
.|+.+.
T Consensus 106 ~l~~~~ 111 (117)
T 2zqm_A 106 QIQSAL 111 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 151
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=49.89 E-value=42 Score=28.67 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=28.4
Q ss_pred CeeEEecCCCCCCcc-------hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 015878 187 NHIRWKGSDSLGTSK-------LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (399)
Q Consensus 187 N~i~W~G~~~s~~~~-------~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lt 238 (399)
+-+.|+|.+..-... +..++..|+..++.|......+.+.|..+...|+.+.
T Consensus 81 ~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 81 NAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred EEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788865321112 2334445555555566666666666666666665554
No 152
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=49.71 E-value=10 Score=35.76 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=36.9
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEE
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W 191 (399)
++.+.+.++|+++++..|+++-+..+|.++|++++.. +.|.-
T Consensus 62 ~~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~-~~y~~ 103 (359)
T 1x19_A 62 EGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED-GKWSL 103 (359)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred CCCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeC-CeEec
Confidence 4789999999999999999999999999999999874 44444
No 153
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=49.08 E-value=15 Score=33.77 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=38.1
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEEecCC
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSD 195 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~G~~ 195 (399)
.+.+.+.++|+.+++.|=-+|-+++.|+..|+|++.. ..|+ .|..
T Consensus 34 ~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~-~~Y~-Lg~~ 78 (265)
T 2ia2_A 34 NQRRTLSDVARATDLTRATARRFLLTLVELGYVATDG-SAFW-LTPR 78 (265)
T ss_dssp CSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESS-SEEE-ECGG
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CEEE-EcHH
Confidence 4679999999999999999999999999999999973 4443 4543
No 154
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=48.73 E-value=45 Score=30.15 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHhcceeeeh--hhhHHhhhhccce--ecc-cCCeeEEecCCCCCCcchHHHHHHHHHH-----------
Q 015878 149 DGTLDLNRTAEVLEVQKRRI--YDITNVLEGIGLI--EKT-SKNHIRWKGSDSLGTSKLDDQVARLKAE----------- 212 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRI--YDItNVLEgIgLI--eK~-sKN~i~W~G~~~s~~~~~~~~~~~Lk~E----------- 212 (399)
...+.+.++|+.+||+.|-| | |.+||+ .+. ..|.|+.-..+.. ..-..+..|++-
T Consensus 3 ~~~~~i~e~a~~~gvs~~tlr~y------~~~gll~p~~~d~~~g~R~y~~~~~---~~l~~i~~l~~~g~~l~~i~~~~ 73 (278)
T 1r8e_A 3 ESYYSIGEVSKLANVSIKALRYY------DKIDLFKPAYVDPDTSYRYYTDSQL---IHLDLIKSLKYIGTPLEEMKKAQ 73 (278)
T ss_dssp CCEEEHHHHHHHHTCCHHHHHHH------HHTTSSCCSEECTTTCCEEEETGGG---GHHHHHHHHHHTTCCHHHHHHHT
T ss_pred CCcEeHHHHHHHHCcCHHHHHHH------HHCCCCCCCccCCCCCccccCHHHH---HHHHHHHHHHHCCCCHHHHHHHH
Q ss_pred -------HHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 015878 213 -------IESLHAEECRIDDSIREKQELIRTLEE 239 (399)
Q Consensus 213 -------l~~L~~~E~~LD~lI~~~~q~Lr~Lte 239 (399)
.+-|.++.++|++.|+.+++.+..|..
T Consensus 74 ~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (278)
T 1r8e_A 74 DLEMEELFAFYTEQERQIREKLDFLSALEQTISL 107 (278)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 155
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=48.67 E-value=4 Score=32.88 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=33.6
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
+.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 478999999999999999999999999999999873
No 156
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=48.60 E-value=10 Score=35.46 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=38.2
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEEe
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK 192 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~ 192 (399)
++.+.+.++|+++++..+.++-+..+|...|++++.....|.-.
T Consensus 50 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~t 93 (360)
T 1tw3_A 50 AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPT 93 (360)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEeC
Confidence 36689999999999999999999999999999998656655543
No 157
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=48.59 E-value=11 Score=29.76 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHhc----ceeeehhhhHHhhhhccceeccc
Q 015878 138 RKFINLIQEAKDGTLDLNRTAEVLE----VQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 138 kkFI~Ll~~ap~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIgLIeK~s 185 (399)
...+.++.. .+.+...++|+.|+ +.+=-+|-+++.||.-|+|++..
T Consensus 13 ~~vL~~l~~--~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 13 WEVMNIIWM--KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHHH--HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHh--CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe
Confidence 344555544 35689999999999 67999999999999999999874
No 158
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=48.51 E-value=7.3 Score=30.76 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=33.8
Q ss_pred CCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 148 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
++..+...++|+.|+|.+=-+...++.|+.-|+|++.
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4446899999999999999999999999999999876
No 159
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=48.02 E-value=57 Score=23.87 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 015878 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (399)
Q Consensus 202 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lte 239 (399)
+...+..|+.+--.|+..|+.|+..|..+...+-.|..
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 34567788888888899999999999999998877753
No 160
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=47.78 E-value=17 Score=34.64 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceec-ccCCeeEEec
Q 015878 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK-TSKNHIRWKG 193 (399)
Q Consensus 138 kkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK-~sKN~i~W~G 193 (399)
.+.+.+|+ .++.+...++|+.|+|+++-||--++.|+..|++.. ....-|+..+
T Consensus 8 ~~Il~~L~--~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~~~g~GY~l~~ 62 (321)
T 1bia_A 8 LKLIALLA--NGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLPE 62 (321)
T ss_dssp HHHHHHHT--TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECSS
T ss_pred HHHHHHHH--cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecCCCcEEee
Confidence 45666664 567899999999999999999999999999998853 2233455543
No 161
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=47.46 E-value=19 Score=28.49 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHhcceee-ehhhhHHhhhhccceecccCCeeEEe
Q 015878 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKR-RIYDITNVLEGIGLIEKTSKNHIRWK 192 (399)
Q Consensus 135 lLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKR-RIYDItNVLEgIgLIeK~sKN~i~W~ 192 (399)
..-.+.+.+|+.. |.....++|+.|++.+= -+==.++.||.=|+|++.+.+.-.|.
T Consensus 11 ~~~~~IL~~Lk~~--g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w~ 67 (79)
T 1xmk_A 11 EIKEKICDYLFNV--SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWH 67 (79)
T ss_dssp HHHHHHHHHHHHT--CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEE
T ss_pred hHHHHHHHHHHHc--CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCeE
Confidence 4557788888865 45789999999999774 66777888999999998877666774
No 162
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=47.29 E-value=54 Score=29.89 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=55.9
Q ss_pred CCCcHHHHHHHHHHHHH-hCCCCc---------------ccHHHHHHHhcc-eeeehhhhHHhhhhccceecccCCeeEE
Q 015878 129 YDSSLGLLTRKFINLIQ-EAKDGT---------------LDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (399)
Q Consensus 129 ~dkSLglLTkkFI~Ll~-~ap~g~---------------ldLn~aA~~L~V-qKRRIYDItNVLEgIgLIeK~sKN~i~W 191 (399)
++-+...|-+.|..|.. -.||.. ..||+|=+.|.- .||+.||. -|.|+.+-+..
T Consensus 55 ~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~--~l~G~~~~~e~------- 125 (207)
T 3bvo_A 55 FRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL--KLHGIEIPERT------- 125 (207)
T ss_dssp SCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH--HHTTCCCCSSC-------
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HhcCCCccccc-------
Confidence 35678889999988874 345432 357777777875 78889998 45566554321
Q ss_pred ecCCCCCCcchHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHhh
Q 015878 192 KGSDSLGTSKLDDQVARLKAEIES------LHAEECRIDDSIREKQELIRTLEE 239 (399)
Q Consensus 192 ~G~~~s~~~~~~~~~~~Lk~El~~------L~~~E~~LD~lI~~~~q~Lr~Lte 239 (399)
......++-.++-+++++++. |..-+.++++.++.+.++|.+..+
T Consensus 126 ---~~~~d~~fLme~me~~E~le~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~ 176 (207)
T 3bvo_A 126 ---DYEMDRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFE 176 (207)
T ss_dssp ---SSSSCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111222233455555544 334444555555555555555543
No 163
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=45.83 E-value=40 Score=24.89 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015878 204 DQVARLKAEIESLHAEECRIDDSIREKQELIR 235 (399)
Q Consensus 204 ~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr 235 (399)
..+..|+.|++.|+.+-..|-+.+.+++.+|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999888888887764
No 164
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=45.61 E-value=15 Score=30.61 Aligned_cols=53 Identities=11% Similarity=0.231 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHh--cceeeehhhhHHhhhhccceecccCC
Q 015878 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVL--EVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 133 LglLTkkFI~Ll~~ap~g~ldLn~aA~~L--~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
+...-++.+.+|+. ++.+...++|+.+ ++++-.+-.-+.+|+.-|||++....
T Consensus 11 md~~d~~IL~~L~~--~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg 65 (111)
T 3b73_A 11 MTIWDDRILEIIHE--EGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANG 65 (111)
T ss_dssp CCHHHHHHHHHHHH--HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTT
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCc
Confidence 33444778888864 2579999999999 99999999999999999999997444
No 165
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=45.37 E-value=15 Score=31.38 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 137 TRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 137 TkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
-++.+.+|+ .++.+...++|+.||++.--+..-++-|+.-|+|.+.
T Consensus 5 d~~il~~L~--~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 5 DRKILRILQ--EDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHT--TCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHH--HCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 356777776 4678899999999999999999999999999999964
No 166
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=45.36 E-value=51 Score=24.65 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 015878 205 QVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (399)
Q Consensus 205 ~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lt 238 (399)
.+..|+.+++.|..+-..|...|..+++++..|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888777776664
No 167
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=45.32 E-value=18 Score=30.18 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=29.2
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
++.+...++|+.+++.+=-+--+++-||.-|||++.
T Consensus 50 ~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 50 GIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ----CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC--
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 467899999999999999999999999999999654
No 168
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=44.86 E-value=12 Score=32.88 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=33.8
Q ss_pred CCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 148 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+....+.++|+.|++.+--++..++.||.-|+|++..
T Consensus 21 ~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 21 NGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC-
T ss_pred hCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecC
Confidence 45578999999999998889999999999999999873
No 169
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=44.36 E-value=23 Score=29.95 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCC-CCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 137 TRKFINLIQEAK-DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 137 TkkFI~Ll~~ap-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+-+.+.+|...+ ++.+.+.++|+.+++.++-+.-|+..|..-|||+-.
T Consensus 13 Al~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~ 61 (143)
T 3t8r_A 13 GLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV 61 (143)
T ss_dssp HHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec
Confidence 334444554444 457999999999999999999999999999999854
No 170
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=44.30 E-value=11 Score=32.08 Aligned_cols=36 Identities=8% Similarity=-0.015 Sum_probs=33.3
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
..-.+.+++|+++++..+-|+.+++-|+.=|+|++.
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 345799999999999999999999999999999985
No 171
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=44.25 E-value=12 Score=36.56 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=39.1
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
++..|...+++.+.+.++|+.|++.+=.+==+++-||.-|||+|.
T Consensus 409 vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 409 ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKK 453 (487)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCE
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 334445555688999999999999999999999999999999997
No 172
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=44.11 E-value=13 Score=28.72 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=32.7
Q ss_pred CCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 148 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+++.+.+.++|+.|++.|=-++-+++.||.-|+|...
T Consensus 27 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~ 63 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECE 63 (95)
T ss_dssp TTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCC
Confidence 3445899999999999999999999999999999433
No 173
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=43.36 E-value=68 Score=23.72 Aligned_cols=38 Identities=24% Similarity=0.484 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 015878 203 DDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEEN 240 (399)
Q Consensus 203 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lted 240 (399)
...+..|+.++..|..+-.+|-+.++.+.++|..|.+.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999888764
No 174
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=43.04 E-value=11 Score=30.54 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=35.2
Q ss_pred CCCCcc-cHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 147 AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 147 ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+++.+ ...++|+.|+|++=-+-..+..|+.-|+|++..
T Consensus 38 ~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 38 DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 356666 999999999999999999999999999999875
No 175
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=42.79 E-value=15 Score=34.61 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=38.8
Q ss_pred HHHHHhCCCCcccHHHHHHHhcc---eeeehhhhHHhhhhccceecc--cCCeeEE
Q 015878 141 INLIQEAKDGTLDLNRTAEVLEV---QKRRIYDITNVLEGIGLIEKT--SKNHIRW 191 (399)
Q Consensus 141 I~Ll~~ap~g~ldLn~aA~~L~V---qKRRIYDItNVLEgIgLIeK~--sKN~i~W 191 (399)
.+.|... ++.+.+.++|+++++ ..|+++-+..+|.++|++++. ..+.|.-
T Consensus 42 f~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~ 96 (352)
T 1fp2_A 42 PNIIQNH-GKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYAL 96 (352)
T ss_dssp HHHHHHH-TSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEE
T ss_pred hhhhhhc-CCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeC
Confidence 3444332 357999999999999 488999999999999999987 3455544
No 176
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=42.66 E-value=14 Score=35.18 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=33.9
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
++.+.+.++|+++++..|.++-+..+|.++|++++.
T Consensus 48 ~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~ 83 (363)
T 3dp7_A 48 REGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE 83 (363)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec
Confidence 478999999999999999999999999999999885
No 177
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.47 E-value=31 Score=34.98 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=6.8
Q ss_pred eeeeCCCCCCCC
Q 015878 370 QKIVPSDCDIDD 381 (399)
Q Consensus 370 ~ki~psd~~~d~ 381 (399)
|+...-|-|.|.
T Consensus 310 ~~FST~DrDnD~ 321 (409)
T 1m1j_C 310 MRFSTFDNDNDN 321 (409)
T ss_dssp CCCBBTTBCCSS
T ss_pred ceeeccCcCCCC
Confidence 455555666653
No 178
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=41.05 E-value=88 Score=27.88 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=65.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHh-CCCCc-------ccHHHHHHHhcc-eeeehhhhHHhhhhccceecccCCeeEEecCC
Q 015878 125 NGCRYDSSLGLLTRKFINLIQE-AKDGT-------LDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSKNHIRWKGSD 195 (399)
Q Consensus 125 ~~~R~dkSLglLTkkFI~Ll~~-ap~g~-------ldLn~aA~~L~V-qKRRIYDItNVLEgIgLIeK~sKN~i~W~G~~ 195 (399)
+..+++-+...|.+.|..|... .||.. ..|++|=+.|.= .+|+.||..= +.|+.+-.-.... +.
T Consensus 24 ~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l-~~g~~~~~e~~~~-----~~- 96 (181)
T 3uo3_A 24 KLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL-LRNIDLTQEQTSN-----EV- 96 (181)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH-HHCCCTTSHHHHH-----HH-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH-HhCCCcccccccc-----cc-
Confidence 3444788899999999999864 46542 468999888876 8999999731 1455443321000 00
Q ss_pred CCCCcchHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHhhh
Q 015878 196 SLGTSKLDDQVARLKAEIES------LHAEECRIDDSIREKQELIRTLEEN 240 (399)
Q Consensus 196 ~s~~~~~~~~~~~Lk~El~~------L~~~E~~LD~lI~~~~q~Lr~Lted 240 (399)
.....++-.++-+++++++. |..-..++++.|..|.++|....+.
T Consensus 97 ~~~d~~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 147 (181)
T 3uo3_A 97 TTSDPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYND 147 (181)
T ss_dssp HHTCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00011222334455666543 4444556777777777777777764
No 179
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=40.87 E-value=11 Score=27.79 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.7
Q ss_pred CCCcccHHHHHHHhcceeeehhhhHH
Q 015878 148 KDGTLDLNRTAEVLEVQKRRIYDITN 173 (399)
Q Consensus 148 p~g~ldLn~aA~~L~VqKRRIYDItN 173 (399)
++..+.+.++|+.|+|.|..||..++
T Consensus 7 ~~~~l~~~eva~~lgvsrstiy~~~~ 32 (66)
T 1z4h_A 7 PDSLVDLKFIMADTGFGKTFIYDRIK 32 (66)
T ss_dssp SSSEECHHHHHHHHSSCHHHHHHHHH
T ss_pred cccccCHHHHHHHHCcCHHHHHHHHH
Confidence 45689999999999999999999987
No 180
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=40.19 E-value=66 Score=25.79 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 015878 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEEN 240 (399)
Q Consensus 202 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lted 240 (399)
+-.++..|+.||..|..+-+++.-.|..++++-+++-.|
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777766666666666666666665544
No 181
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=40.13 E-value=88 Score=27.49 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHH-hCCCCc---------------ccHHHHHHHhcc-eeeehhhhHHhhhhccceecccCCeeEEecCC
Q 015878 133 LGLLTRKFINLIQ-EAKDGT---------------LDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSKNHIRWKGSD 195 (399)
Q Consensus 133 LglLTkkFI~Ll~-~ap~g~---------------ldLn~aA~~L~V-qKRRIYDItNVLEgIgLIeK~sKN~i~W~G~~ 195 (399)
...|-+.|..+.. -.||.. .-|++|=+.|.= .+|+.||.. |.|+.+-.-. .
T Consensus 20 ~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~--l~g~~~~~e~----------~ 87 (174)
T 3hho_A 20 GSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS--LQGIEMNAEQ----------Q 87 (174)
T ss_dssp HHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH--HTTCCCC--------------
T ss_pred HHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH--ccCCCccccc----------C
Confidence 6778888888774 345431 236777777766 889999974 5566654322 0
Q ss_pred CCCCcchHHHHHHHHHHHHH----------HHHHHHhHHHHHHHHHHHHHHHhhh
Q 015878 196 SLGTSKLDDQVARLKAEIES----------LHAEECRIDDSIREKQELIRTLEEN 240 (399)
Q Consensus 196 ~s~~~~~~~~~~~Lk~El~~----------L~~~E~~LD~lI~~~~q~Lr~Lted 240 (399)
.....++-..+-++.++++. |..-..++++.|+.|.++|....+.
T Consensus 88 ~~~d~~fLme~me~rE~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 142 (174)
T 3hho_A 88 TLQDPMFLMEQMELREELESVTACADPEAALVAFDTKVTAMQRHYLAQLQGQLAQ 142 (174)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11112333334455666554 4445556777777777777777765
No 182
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=39.92 E-value=17 Score=33.71 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=37.7
Q ss_pred HHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 141 INLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 141 I~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+..+...+++.+...++|+.+++.+=.+--+++-||.-|+|+|.
T Consensus 164 L~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~ 207 (250)
T 1p4x_A 164 LAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKE 207 (250)
T ss_dssp HHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEE
T ss_pred HHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 33444455457999999999999999999999999999999998
No 183
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=39.04 E-value=1.2e+02 Score=27.20 Aligned_cols=33 Identities=6% Similarity=0.360 Sum_probs=21.9
Q ss_pred EEEEeCCCCceEEecCCcchhhcccceEEEEEecCCCCeEE
Q 015878 265 LIAIKAPQASYIEVPDPDEDISFLKRQYKMIIRSTTGPIDV 305 (399)
Q Consensus 265 vIAIKAP~gT~LEVPdP~e~~~~~~~~yqI~LkS~~GPIdV 305 (399)
.|+|+.-+.|.|++-..++. ...+.+..+ |..+
T Consensus 66 FIlV~T~k~t~I~ceISeD~-------~~~~F~F~~-pFEI 98 (155)
T 2aze_A 66 FIIVNTSKKTVIDCSISNDK-------FEYLFNFDN-TFEI 98 (155)
T ss_dssp CEEEEEESSCCEEEEECTTS-------SEEEEEESS-CEEE
T ss_pred EEEEEcCCCCEEEEEEecCc-------cEEEEeCCC-Ceec
Confidence 58999999999998765432 234555544 6543
No 184
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=38.91 E-value=21 Score=31.79 Aligned_cols=44 Identities=25% Similarity=0.504 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 138 kkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.+.+++ ++.+...++|+.|++.+--++-.++.||.-|+|++.
T Consensus 23 ~~IL~~L~---~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 23 RKILKLLR---NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34566665 367999999999999999999999999999999987
No 185
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=38.72 E-value=19 Score=33.81 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhcc-cccccccH
Q 015878 206 VARLKAEIESLHAEECRIDDSIREKQELIRTLEENENH-QKYMFLTE 251 (399)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lted~~n-~~~aYVT~ 251 (399)
-++|++|+..|+.+..+++++.++ .++|+.|.+.... ..|-|+.-
T Consensus 28 N~~Lk~e~~~l~~~~~~~~~l~~E-n~rLr~lL~~~~~~~~~~~i~A 73 (255)
T 2j5u_A 28 NQHLKERLEELAQLESEVADLKKE-NKDLKESLDITDSIRDYDPLNA 73 (255)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTCCSCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCccccccCceEEE
Confidence 357888999898888888888776 5578887765543 34444433
No 186
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=38.20 E-value=29 Score=28.64 Aligned_cols=46 Identities=13% Similarity=0.261 Sum_probs=39.3
Q ss_pred HHHHHHhCCCCcccHHHHHHHh-----cceeeehhhhHHhhhhccceecccC
Q 015878 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
.+++|.+. ++.+...++.+.| ++.+=-+|-.++.|+..|+|.|..-
T Consensus 16 Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 16 ISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 55777654 5689999999999 7899999999999999999999743
No 187
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=37.51 E-value=15 Score=36.18 Aligned_cols=26 Identities=12% Similarity=0.046 Sum_probs=11.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHh
Q 015878 213 IESLHAEECRIDDSIREKQELIRTLE 238 (399)
Q Consensus 213 l~~L~~~E~~LD~lI~~~~q~Lr~Lt 238 (399)
+..|+.+-+.++..|..++++|.+|.
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344333444444555555444444
No 188
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.12 E-value=26 Score=29.11 Aligned_cols=46 Identities=15% Similarity=0.394 Sum_probs=38.8
Q ss_pred HHHHHHhCCCCcccHHHHHHHh-----cceeeehhhhHHhhhhccceeccc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+++|.++.++.+...++.+.| .+.+=-+|-.++.|+..|||.|..
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 5677766554789999999999 788889999999999999999974
No 189
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.06 E-value=84 Score=23.15 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 015878 206 VARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (399)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lt 238 (399)
+..|+.+++.|..+-..|...|..+++++..|.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888888888777776664
No 190
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=36.03 E-value=24 Score=29.11 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=34.4
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehh
Q 015878 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (399)
Q Consensus 129 ~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 169 (399)
.+..=..|...+++++.+..-.-+.+.++|+..||.|.-||
T Consensus 29 ~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 69 (218)
T 3dcf_A 29 GNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIY 69 (218)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHH
Confidence 34445678888999998877778999999999999999998
No 191
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=35.60 E-value=22 Score=33.04 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=35.3
Q ss_pred cccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeE
Q 015878 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (399)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~ 190 (399)
.+.+.++|+++++..|.++-+..+|.++|++++.. +.|.
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~-~~y~ 94 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG-DAFR 94 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC-Ceee
Confidence 89999999999999999999999999999999875 4443
No 192
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=35.12 E-value=29 Score=28.53 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=38.1
Q ss_pred HHHHHHHhCCCCcccHHHHHHHhc----ceeeehhhhHHhhhhccceeccc
Q 015878 139 KFINLIQEAKDGTLDLNRTAEVLE----VQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 139 kFI~Ll~~ap~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.++.+|... .+.+...++++.|+ +.+=-+|-+++-||.-|+|++..
T Consensus 13 ~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 13 AVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 455666543 35789999999998 78889999999999999999974
No 193
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=34.96 E-value=15 Score=32.64 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.9
Q ss_pred CCcccHHHHHHHhcceeeehhhhHH
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITN 173 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItN 173 (399)
+..+.+.++|+.|+|.+.|+|+.+.
T Consensus 29 ~~~LTv~EVAe~LgVs~srV~~LIr 53 (148)
T 2kfs_A 29 EPTYDLPRVAELLGVPVSKVAQQLR 53 (148)
T ss_dssp SCEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CceEcHHHHHHHhCCCHHHHHHHHH
Confidence 4689999999999999999999865
No 194
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=34.95 E-value=29 Score=30.27 Aligned_cols=48 Identities=13% Similarity=0.229 Sum_probs=38.6
Q ss_pred HHHHHHHHHhC-CCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 137 TRKFINLIQEA-KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 137 TkkFI~Ll~~a-p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+-+.+-+|-.. .++.+...++|+.+++.++-+.-|+..|..-|||+-.
T Consensus 29 Alr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 29 GLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 33444444333 4567999999999999999999999999999999865
No 195
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=34.82 E-value=20 Score=33.82 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=36.3
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcc---eeeehhhhHHhhhhccceecc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEV---QKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~V---qKRRIYDItNVLEgIgLIeK~ 184 (399)
.++.|... ++.+.+.++|+++++ ..++++-++.+|.++|++++.
T Consensus 35 if~~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 35 IADAIHNH-GKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp HHHHHHHH-TSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred hHhHHhhc-CCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 34445432 357999999999999 588999999999999999987
No 196
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=34.76 E-value=29 Score=31.09 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=36.8
Q ss_pred CCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 147 AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 147 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
..++.+...++|+.|+|.+-.+-.+++-||.-|||++...
T Consensus 16 ~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 16 TRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp SSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred hcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC
Confidence 3577899999999999999999999999999999999854
No 197
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=34.60 E-value=22 Score=31.47 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=40.4
Q ss_pred HHHHHHHHh---CCCCcc-cHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 138 RKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 138 kkFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
..+.+.+.. .|+..+ .-.++|++|||+|=-+=..+..|+.-|||++...
T Consensus 14 ~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~g 66 (239)
T 1hw1_A 14 EYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHG 66 (239)
T ss_dssp HHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecC
Confidence 344445543 478888 7999999999999999999999999999998743
No 198
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=34.51 E-value=61 Score=25.57 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=33.7
Q ss_pred HHhcceeeehhhhHHhhhhccceecccCCeeEEecCCCCCCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015878 159 EVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTL 237 (399)
Q Consensus 159 ~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~G~~~s~~~~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~L 237 (399)
..|.-+++..-++.+=|+.+ .- ....|+=+|.-... .....-...|.+.++.+...-..|+..+..++.++.++
T Consensus 25 ~~l~~~~~e~~~~~~EL~~l---~~-d~~vy~~iG~vfv~-~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 25 QTVEMQINETQKALEELSRA---AD-DAEVYKSSGNILIR-VAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHS---CT-TCCEEEEETTEEEE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC---CC-CchHHHHHhHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666665555554 32 33466667743211 12233334444444444444444444444444444433
No 199
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=34.33 E-value=61 Score=25.09 Aligned_cols=35 Identities=6% Similarity=0.109 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 015878 204 DQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (399)
Q Consensus 204 ~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lt 238 (399)
+.+..|+.+++.|..+-..|.+.+..++++|..|.
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44677888888888877888888888888877653
No 200
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.14 E-value=98 Score=23.23 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015878 206 VARLKAEIESLHAEECRIDDSIREKQELIRTL 237 (399)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~L 237 (399)
...|+.+++.|..+-..|...|..++.++..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666655444
No 201
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=34.07 E-value=26 Score=31.34 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHH
Q 015878 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITN 173 (399)
Q Consensus 136 LTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItN 173 (399)
+..+|++++.+.....+.|.++|+.+++++|.+.-+.-
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 57889999999988899999999999999999988764
No 202
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=33.79 E-value=10 Score=29.42 Aligned_cols=30 Identities=10% Similarity=0.004 Sum_probs=25.3
Q ss_pred cccHHHHHHHhcceeeehhhhHHhhhhccc
Q 015878 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGL 180 (399)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIgL 180 (399)
-..+.++|..+||.+.-||-++.-...-|.
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 467999999999999999999987766444
No 203
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=33.65 E-value=14 Score=30.57 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=41.0
Q ss_pred HHHHHHHHHHh---CCCCcc-cHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 136 LTkkFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
+...+...+.. .|+..+ ...++|+.|+|+|--+-..+..|+.-|+|++....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~ 71 (126)
T 3ic7_A 16 IADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGI 71 (126)
T ss_dssp HHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcCC
Confidence 44455555543 467777 89999999999999999999999999999988554
No 204
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=33.48 E-value=27 Score=31.49 Aligned_cols=41 Identities=12% Similarity=0.164 Sum_probs=37.4
Q ss_pred CCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 147 AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 147 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
.|+..+.-.++|+.|||+|=-|=+.+..|+.-|||+.....
T Consensus 47 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~ 87 (239)
T 2hs5_A 47 RPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNR 87 (239)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred CCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 47888999999999999999999999999999999987543
No 205
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=33.30 E-value=27 Score=28.51 Aligned_cols=30 Identities=10% Similarity=0.372 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015878 207 ARLKAEIESLHAEECRIDDSIREKQELIRT 236 (399)
Q Consensus 207 ~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~ 236 (399)
..|+++++.|+.+...|+..|..+..+|++
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~ 33 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKN 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467788888888888888888777666543
No 206
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=32.99 E-value=19 Score=26.46 Aligned_cols=40 Identities=13% Similarity=0.294 Sum_probs=29.0
Q ss_pred cccHHHHHHHhcceeeehhhhHHhhhhccceecccC--CeeEEec
Q 015878 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK--NHIRWKG 193 (399)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK--N~i~W~G 193 (399)
.++..++|+.|+|+++-||..+.- |+ -+.+... .++.|.-
T Consensus 2 ~lt~~e~a~~LgvS~~Tl~rw~~~--G~-P~~~~~g~~~~~~y~~ 43 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQEQ--GM-PVLRGGGKGNEVLYDS 43 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTTT--TC-CCSSCCCSSSCCEEEH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHC--CC-CeEeeCCCcceEEECH
Confidence 468899999999999999999864 55 3333333 3666653
No 207
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=32.80 E-value=1.7e+02 Score=26.14 Aligned_cols=38 Identities=26% Similarity=0.150 Sum_probs=33.2
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
+......++|+.|+|.+--+-.+++-||.-|||++...
T Consensus 22 ~~~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (226)
T 2qq9_A 22 GVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASD 59 (226)
T ss_dssp TCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 33446699999999999999999999999999999743
No 208
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=32.33 E-value=19 Score=34.15 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=31.9
Q ss_pred cccHHHHHHHhcc------eeeehhhhHHhhhhccceecc
Q 015878 151 TLDLNRTAEVLEV------QKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 151 ~ldLn~aA~~L~V------qKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.+.++|+++++ ..|+++-+..+|.++|++++.
T Consensus 62 ~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 62 FMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp CBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 3999999999999 789999999999999999987
No 209
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=32.28 E-value=75 Score=27.00 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015878 204 DQVARLKAEIESLHAEECRIDDSIREKQELIRTL 237 (399)
Q Consensus 204 ~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~L 237 (399)
+++..|+++++.|....+.|+..|..+++.+...
T Consensus 88 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~ 121 (142)
T 3gp4_A 88 KQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPA 121 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666776666666655433
No 210
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=32.21 E-value=1.3e+02 Score=29.41 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015878 202 LDDQVARLKAEIESLHAEECRIDDSIREKQEL 233 (399)
Q Consensus 202 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~ 233 (399)
...+++.|++.++.|+.+-..|.++|..+...
T Consensus 16 ~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 16 HDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655555555555444433
No 211
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=31.98 E-value=22 Score=28.77 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=35.4
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcce----eeehhhhHHhhhhccceeccc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQ----KRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~Vq----KRRIYDItNVLEgIgLIeK~s 185 (399)
++.+|.. .+.+...++++.|+.. +=-+|-+++-||.-|+|+|..
T Consensus 40 VL~~L~~--~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 40 VMRVIWS--LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp HHHHHHH--HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHh--CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 4455544 3468999999999864 567999999999999999874
No 212
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=31.76 E-value=31 Score=28.87 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=34.7
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhh
Q 015878 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (399)
Q Consensus 129 ~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 170 (399)
.+..=..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 26 ~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~ 67 (215)
T 2qko_A 26 NPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASN 67 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHH
T ss_pred cHHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHH
Confidence 444456778889999988777789999999999999999983
No 213
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.00 E-value=97 Score=23.23 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015878 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIR 235 (399)
Q Consensus 202 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr 235 (399)
+...+..|+.+...|..+-..|...+.++.+-|.
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555555555555544443
No 214
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=31.00 E-value=74 Score=25.05 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHH-HHHhCCCCcccHHHHHHHhcceeeehhhhHH
Q 015878 131 SSLGLLTRKFIN-LIQEAKDGTLDLNRTAEVLEVQKRRIYDITN 173 (399)
Q Consensus 131 kSLglLTkkFI~-Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItN 173 (399)
..|..+-+++|. .|.... + +..+||+.|||.|+.||.-+.
T Consensus 36 ~~l~~~Er~~I~~aL~~~~-G--N~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 36 MSADRVRWEHIQRIYEMCD-R--NVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp SCHHHHHHHHHHHHHHHTT-S--CHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhC-C--CHHHHHHHhCCCHHHHHHHHH
Confidence 457777777774 444433 2 467999999999999997654
No 215
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.96 E-value=89 Score=23.14 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 015878 205 QVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (399)
Q Consensus 205 ~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lt 238 (399)
.+..|+.+++.|..+-..|...|..++.++..|.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888888888887777766553
No 216
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=30.80 E-value=27 Score=31.17 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=34.3
Q ss_pred CCCCcc-cHHHHHHHhcceeeehhhhHHhhhhccceec
Q 015878 147 AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (399)
Q Consensus 147 ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIgLIeK 183 (399)
.||..+ .-.++|+.|||+|=-+=+.+..|+.-|||+.
T Consensus 23 ~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 23 KIGDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 477788 5889999999999999999999999999998
No 217
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=30.59 E-value=32 Score=29.89 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=34.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhh
Q 015878 127 CRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (399)
Q Consensus 127 ~R~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 170 (399)
.|...+=..|..-.++++....-.-+.+..+|+.+||.|.-||=
T Consensus 21 ~r~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 64 (211)
T 3fiw_A 21 GMTKMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYW 64 (211)
T ss_dssp ---CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHT
T ss_pred cccccCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHH
Confidence 34445557788888899987666679999999999999998884
No 218
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=30.30 E-value=77 Score=26.50 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred ccHHHHHHHhcceeeehhhhHHhhhhcccee--cccCCeeEEecCCCCCCcchHHHHHHHHHH-----------------
Q 015878 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIE--KTSKNHIRWKGSDSLGTSKLDDQVARLKAE----------------- 212 (399)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIgLIe--K~sKN~i~W~G~~~s~~~~~~~~~~~Lk~E----------------- 212 (399)
+.+.++|+.+||..|-|-=. |..||+. +...|.+++-..+.. ..-..+..|++-
T Consensus 1 ~~I~e~A~~~gvs~~tLR~y----e~~Gll~p~~r~~~g~R~Y~~~dl---~~l~~I~~lr~~G~sl~eI~~~l~~~~~~ 73 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFY----EEKGLVTPPMRSENGYRTYTQQHL---NELTLLRQARQVGFNLEESGELVNLFNDP 73 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHH----HHTTCSCCCEECTTSCEECCHHHH---HHHHHHHHHHHTTCCHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHCcCHHHHHHH----HHCCCCCCCccCCCCCeeeCHHHH---HHHHHHHHHHHCCCCHHHHHHHHHhhhcC
Q ss_pred -------HHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 015878 213 -------IESLHAEECRIDDSIREKQELIRTLEE 239 (399)
Q Consensus 213 -------l~~L~~~E~~LD~lI~~~~q~Lr~Lte 239 (399)
.+-|..+...|++.|..+++.+..|..
T Consensus 74 ~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T 1q06_A 74 QRHSADVKRRTLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 219
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=30.28 E-value=13 Score=32.83 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=33.5
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
+.+...++|+.|++.+=-+.-+++.||.-|||+|..
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 458999999999999999999999999999999973
No 220
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=30.23 E-value=41 Score=30.38 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=39.9
Q ss_pred HHHHHHHHHH-HHHhCCCCcccHHHHHHHhcceeeehhhhHHh-hhhccceecccC
Q 015878 133 LGLLTRKFIN-LIQEAKDGTLDLNRTAEVLEVQKRRIYDITNV-LEGIGLIEKTSK 186 (399)
Q Consensus 133 LglLTkkFI~-Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNV-LEgIgLIeK~sK 186 (399)
|...-++++. +++...+..+.+..+|+.||+.+..+|..+.- |...|+|++..+
T Consensus 245 l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~ 300 (324)
T 1hqc_A 245 LEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPR 300 (324)
T ss_dssp CCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETT
T ss_pred CCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCc
Confidence 4444455554 44565667789999999999999999995544 777899987643
No 221
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=30.22 E-value=29 Score=33.84 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=32.9
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
..+....+++.++|+++-+.-.++-|+..|+|++.++.
T Consensus 310 p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~g 347 (373)
T 2qc0_A 310 PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSG 347 (373)
T ss_dssp SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--C
T ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecCC
Confidence 36788899999999999999999999999999988543
No 222
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=30.05 E-value=33 Score=32.62 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=37.7
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
..++|.+. .+.+++.++|+++++..+.++-+..+|.++|++++...
T Consensus 33 lfd~L~~~-~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~ 78 (353)
T 4a6d_A 33 VFDLLAEA-PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETR 78 (353)
T ss_dssp HHHHHHHS-SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHhcC-CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEecc
Confidence 34445443 46799999999999999999999999999999986533
No 223
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=29.88 E-value=52 Score=26.81 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCee
Q 015878 132 SLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHI 189 (399)
Q Consensus 132 SLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i 189 (399)
.+..+...+.++++.. +.+++.++-+.||++|+..-=|..-|..+|+..|++-.++
T Consensus 63 ~~~~~~~~l~~~~~~~--~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~gd~R~ 118 (121)
T 2pjp_A 63 RIVEFANMIRDLDQEC--GSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHL 118 (121)
T ss_dssp HHHHHHHHHHHHHHHH--SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHC--CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEeeCCEee
Confidence 3444455556666543 7899999999999999999999999999999998864444
No 224
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=29.35 E-value=1.1e+02 Score=24.42 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=23.8
Q ss_pred ccHHHHHHHhcceeeehhhhHHhhhhccceec--ccCCeeEEe
Q 015878 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK--TSKNHIRWK 192 (399)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK--~sKN~i~W~ 192 (399)
+.+.++|+.+||+.+-|-=. |..||+.- ...|.+++-
T Consensus 3 ~~i~e~A~~~gvs~~tLR~y----e~~Gll~p~~~~~~g~R~Y 41 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHY----DNIELLNPSALTDAGYRLY 41 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHH----HHTTSSCCSEECTTCCEEB
T ss_pred ccHHHHHHHHCcCHHHHHHH----HHCCCCCCCeECCCCCeee
Confidence 57889999999988766322 34677643 234555543
No 225
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=29.28 E-value=22 Score=30.53 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=34.9
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhh
Q 015878 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (399)
Q Consensus 128 R~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 170 (399)
|.+..-..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 40 r~~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~ 82 (229)
T 3bni_A 40 RSAERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYR 82 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHH
Confidence 3344446677888899988777789999999999999999984
No 226
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=29.24 E-value=1e+02 Score=25.39 Aligned_cols=34 Identities=12% Similarity=0.333 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 015878 206 VARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (399)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lte 239 (399)
+.-|+..++.|...-+.|.+.+..+++++..+.+
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777777776654
No 227
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=29.06 E-value=46 Score=29.33 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=40.4
Q ss_pred HHHHHHhCCCCcccHHHHHHHhc-ceeeehhhhHHhhhhccceeccc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLE-VQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~-VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+.++...+.+...+.++++.++ +.+=-||--++.|+..|||++..
T Consensus 34 IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~ 80 (151)
T 3u1d_A 34 VLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIP 80 (151)
T ss_dssp HHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEee
Confidence 34556677888899999999999 99999999999999999999874
No 228
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=28.87 E-value=1.2e+02 Score=24.55 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 015878 208 RLKAEIESLHAEECRIDDSIREKQELIRTLEENE 241 (399)
Q Consensus 208 ~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lted~ 241 (399)
.|..||..|..++..||..|..++...+.|-..+
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE 55 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQEE 55 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHH
Confidence 4556788888888999999999988888886543
No 229
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.80 E-value=1.2e+02 Score=24.09 Aligned_cols=8 Identities=13% Similarity=0.293 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 015878 206 VARLKAEI 213 (399)
Q Consensus 206 ~~~Lk~El 213 (399)
+.+||..+
T Consensus 21 i~eLq~~L 28 (72)
T 3nmd_A 21 LRDLQYAL 28 (72)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 230
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=28.79 E-value=59 Score=29.53 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=41.1
Q ss_pred HHHHHHHHHHh---CCCCcc-cHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 136 LTkkFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
+...+.+.+.. .++..+ ...++|+.++|+|=-+-..++.|+.-|+|.+...
T Consensus 15 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 69 (243)
T 2wv0_A 15 IMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKG 69 (243)
T ss_dssp HHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeCC
Confidence 34445555544 467777 8999999999999999999999999999998633
No 231
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.68 E-value=56 Score=32.62 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 015878 206 VARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (399)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lte 239 (399)
+..|++|++.|+++-.+|++.|+.++.+++++.+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNE 38 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666665543
No 232
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=28.45 E-value=1.4e+02 Score=23.32 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 015878 201 KLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (399)
Q Consensus 201 ~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lt 238 (399)
.+......+..+++.|..+...+...+..++..|+.+.
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~~ 106 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAM 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677888999999999999999999999999998753
No 233
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.34 E-value=1.2e+02 Score=24.58 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=15.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 015878 213 IESLHAEECRIDDSIREKQELIRTLEEN 240 (399)
Q Consensus 213 l~~L~~~E~~LD~lI~~~~q~Lr~Lted 240 (399)
|+.-..+-+.|.+.|...++.|++|..+
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3333344445555566666777777543
No 234
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=28.09 E-value=26 Score=31.52 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhh
Q 015878 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLE 176 (399)
Q Consensus 136 LTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLE 176 (399)
+..++++++.+..+..++|.++|+.+++++|.|.-++.-.-
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~~ 44 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVT 44 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56788999999889999999999999999999888755433
No 235
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=27.99 E-value=44 Score=30.92 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=37.7
Q ss_pred HHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 141 INLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 141 I~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
+..|.....+.+...++|+.|++.+--+-=+++=||.-|+|+|.
T Consensus 40 L~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 40 LTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp HHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred HHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEec
Confidence 34444444567899999999999999999999999999999997
No 236
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=27.74 E-value=53 Score=29.75 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHh---CCCCcc-cHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 135 LLTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 135 lLTkkFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
.+...+.+.+.. .++..+ ...++|++++|+|=-+-..++.|+.-|+|++...
T Consensus 13 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 68 (236)
T 3edp_A 13 VIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNG 68 (236)
T ss_dssp HHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECC
Confidence 355666666655 467777 8999999999999999999999999999998743
No 237
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=27.72 E-value=36 Score=32.52 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=38.2
Q ss_pred HHHHHHhCCCCcccHHHHHHHhcc--eee---ehhhhHHhhhhccceecc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLEV--QKR---RIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~V--qKR---RIYDItNVLEgIgLIeK~ 184 (399)
..+.|..+.++.+.+.++|+++++ ..| .++-|..+|-++|++++.
T Consensus 45 ifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~ 94 (364)
T 3p9c_A 45 LLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94 (364)
T ss_dssp HHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEe
Confidence 455565555578999999999998 777 899999999999999986
No 238
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=27.23 E-value=15 Score=31.28 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceec
Q 015878 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (399)
Q Consensus 135 lLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK 183 (399)
.+-++.+..++ +++.+...++|+.|||++--+...+..|+.-|+|++
T Consensus 13 ~l~~~Il~~l~--~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 13 RIDRNILNELQ--KDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp SHHHHHHHHHH--HCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHHHH--hCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 34455666444 566789999999999999999999999999999986
No 239
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=27.07 E-value=19 Score=29.72 Aligned_cols=45 Identities=9% Similarity=0.004 Sum_probs=36.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehh
Q 015878 125 NGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (399)
Q Consensus 125 ~~~R~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 169 (399)
...|.+..-..|....++++....-.-+.+.++|++.||.|.-||
T Consensus 13 ~~~r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY 57 (216)
T 3qqa_A 13 PSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIY 57 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSSS
T ss_pred CCcccHHHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHHH
Confidence 345555666778888889998877778999999999999998887
No 240
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.73 E-value=57 Score=27.38 Aligned_cols=46 Identities=11% Similarity=0.241 Sum_probs=38.7
Q ss_pred HHHHHHhCCCCcccHHHHHHHh-----cceeeehhhhHHhhhhccceecccC
Q 015878 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
.+++|..+ ++.+...++.+.| ++.+=-+|-.++.|+..|||.|..-
T Consensus 27 Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 27 ILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp HHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEee
Confidence 55677654 5679999999999 7888899999999999999999743
No 241
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=26.22 E-value=39 Score=27.61 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=35.5
Q ss_pred CCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 147 AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 147 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
++++.+.+.++|+.+++.+=++-=.+..||.-|||++.
T Consensus 32 ~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~ 69 (96)
T 2obp_A 32 NGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVS 69 (96)
T ss_dssp TTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEee
Confidence 37888999999999999999999999999999999985
No 242
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=26.14 E-value=49 Score=26.72 Aligned_cols=42 Identities=19% Similarity=0.114 Sum_probs=33.8
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehh
Q 015878 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (399)
Q Consensus 128 R~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 169 (399)
|.+..=..|..-.++++....-.-+.+.++|+..||.|.-||
T Consensus 8 ~~~~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 49 (196)
T 3he0_A 8 PAVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIY 49 (196)
T ss_dssp ---CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHH
Confidence 344455678888999998876678999999999999999998
No 243
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=26.09 E-value=27 Score=26.80 Aligned_cols=26 Identities=8% Similarity=0.296 Sum_probs=23.2
Q ss_pred CCCcccHHHHHHHhcceeeehhhhHH
Q 015878 148 KDGTLDLNRTAEVLEVQKRRIYDITN 173 (399)
Q Consensus 148 p~g~ldLn~aA~~L~VqKRRIYDItN 173 (399)
....+.+.+||+-|++.+..+|.+++
T Consensus 13 ~K~~LTi~EaAeylgIg~~~l~~L~~ 38 (70)
T 1y6u_A 13 ERYTLTIEEASKYFRIGENKLRRLAE 38 (70)
T ss_dssp TSSEEEHHHHHHHTCSCHHHHHHHHH
T ss_pred ccceeCHHHHHHHHCcCHHHHHHHHH
Confidence 34678999999999999999999985
No 244
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=25.71 E-value=90 Score=29.60 Aligned_cols=41 Identities=15% Similarity=0.315 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 015878 200 SKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEEN 240 (399)
Q Consensus 200 ~~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lted 240 (399)
.++++.+..|.+.++.+.+.|+.....|+.++++|++|-+.
T Consensus 9 d~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 9 DQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677889999999999999999999999999999999765
No 245
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=25.68 E-value=63 Score=27.47 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=32.9
Q ss_pred ccHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
+...++|..||+.+..+.=+++-|+.-|+|++..+.
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 688999999999999999999999999999987443
No 246
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.61 E-value=1.4e+02 Score=20.05 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 015878 206 VARLKAEIESLHAEECRIDDSIREK 230 (399)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~ 230 (399)
+..|+.|+..|..+-..|.--|..+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655555444443
No 247
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.41 E-value=72 Score=23.56 Aligned_cols=36 Identities=14% Similarity=0.348 Sum_probs=24.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015878 199 TSKLDDQVARLKAEIESLHAEECRIDDSIREKQELI 234 (399)
Q Consensus 199 ~~~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L 234 (399)
..+++.-+..+-++++.|..+-.+|.+.+..++++|
T Consensus 22 ~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 22 EDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346777788888888888888888877777766553
No 248
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.29 E-value=1.3e+02 Score=23.79 Aligned_cols=14 Identities=21% Similarity=0.157 Sum_probs=5.4
Q ss_pred HhHHHHHHHHHHHH
Q 015878 221 CRIDDSIREKQELI 234 (399)
Q Consensus 221 ~~LD~lI~~~~q~L 234 (399)
.+.|..|+.++.+|
T Consensus 50 ~ekd~eI~~LqseL 63 (72)
T 3nmd_A 50 DQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444433333
No 249
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=25.07 E-value=54 Score=25.79 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCCcccHHHHHHHhcc----eeeehhhhHHhhhhccceeccc
Q 015878 139 KFINLIQEAKDGTLDLNRTAEVLEV----QKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 139 kFI~Ll~~ap~g~ldLn~aA~~L~V----qKRRIYDItNVLEgIgLIeK~s 185 (399)
.++.++... +.+...++|+.|++ .+--++-+++-||.-|+|++..
T Consensus 14 ~vL~~L~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 14 DVMNIIWDK--KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHS--SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhc--CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 455666553 46899999999985 6788999999999999999974
No 250
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=24.84 E-value=2.3e+02 Score=22.30 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=31.7
Q ss_pred HHHHHHhCCCCcccH-HHHHHHhcceeeehhhhHHhhhhccceecc
Q 015878 140 FINLIQEAKDGTLDL-NRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 140 FI~Ll~~ap~g~ldL-n~aA~~L~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.+.+|...|..-.+| ..+++.+++..--||-++.-||.-|+|++.
T Consensus 14 IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~ 59 (108)
T 3l7w_A 14 ILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTY 59 (108)
T ss_dssp HHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEE
Confidence 345555544333333 233445689999999999999999999986
No 251
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=24.73 E-value=62 Score=28.92 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=31.8
Q ss_pred ccHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
....++|+.|++.+--+..+++-||.-|||++...
T Consensus 25 ~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (230)
T 1fx7_A 25 PLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD 59 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 34599999999999999999999999999999853
No 252
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=24.64 E-value=39 Score=21.54 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=22.2
Q ss_pred ccHHHHHHHhcceeeehhhhHHhhhh
Q 015878 152 LDLNRTAEVLEVQKRRIYDITNVLEG 177 (399)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEg 177 (399)
+...++|+.|+|.+.-||-+++-++.
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 57999999999999999998876544
No 253
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=24.50 E-value=33 Score=28.86 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=34.0
Q ss_pred cccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeE
Q 015878 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (399)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~ 190 (399)
.+...++|..||+.+..++=+.+-|+.-|+|+.. +++|.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~ 207 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS-RGKIT 207 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEE
Confidence 5678999999999999999999999999999876 45444
No 254
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=24.37 E-value=62 Score=22.59 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=28.9
Q ss_pred HHHHhCCCCcccHHHHHHHh-----cceeeehhhhHHhhhhccceecc
Q 015878 142 NLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 142 ~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
.++.. ++.+...++++.| +|.++-||-.++ .+|++ |.
T Consensus 12 ~ll~~--~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v-~~ 53 (64)
T 2p5k_A 12 EIITS--NEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV-KV 53 (64)
T ss_dssp HHHHH--SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE-EE
T ss_pred HHHHc--CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE-EE
Confidence 44443 4689999999999 999999997777 56777 54
No 255
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=24.34 E-value=2.3e+02 Score=24.74 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=53.6
Q ss_pred CcHHHHHHHHHHHHH-hCCCCc---------------ccHHHHHHHhcc-eeeehhhhHHhhhhccceecccCCeeEEec
Q 015878 131 SSLGLLTRKFINLIQ-EAKDGT---------------LDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSKNHIRWKG 193 (399)
Q Consensus 131 kSLglLTkkFI~Ll~-~ap~g~---------------ldLn~aA~~L~V-qKRRIYDItNVLEgIgLIeK~sKN~i~W~G 193 (399)
-+...|-+.|..+.. -.||.. .-||+|=+.|.- .+|+.||.. |.|+.+-... +
T Consensus 15 i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~--l~g~~~~~e~--~------ 84 (171)
T 1fpo_A 15 LDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS--LHGFDLASEQ--H------ 84 (171)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH--TTTCCTTCSS--S------
T ss_pred CCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH--hcCCCccccc--c------
Confidence 367788888888774 334431 246777777775 788899984 5566553211 0
Q ss_pred CCCCCCcchHHHHHHHHHHHHH---------HHHHHHhHHHHHHHHHHHHHHHhh
Q 015878 194 SDSLGTSKLDDQVARLKAEIES---------LHAEECRIDDSIREKQELIRTLEE 239 (399)
Q Consensus 194 ~~~s~~~~~~~~~~~Lk~El~~---------L~~~E~~LD~lI~~~~q~Lr~Lte 239 (399)
... ..+.-..+-+++++|+. |..-..++++.|+.|.++|....+
T Consensus 85 -~~~-d~~fLme~me~rE~lee~~~~~d~~~l~~l~~~~~~~~~~~~~~l~~~~~ 137 (171)
T 1fpo_A 85 -TVR-DTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLD 137 (171)
T ss_dssp -CCS-CHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccC-CHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011 11222223344554544 334445556666666666666654
No 256
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=24.31 E-value=49 Score=27.97 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=33.4
Q ss_pred ccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeE
Q 015878 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (399)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~ 190 (399)
+...++|..||+.+..+.-+.+-|+.-|+|++. ++.|.
T Consensus 179 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~ 216 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLD-GREIS 216 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEES-SSCEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEec-CCEEE
Confidence 567899999999999999999999999999886 44444
No 257
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=24.13 E-value=58 Score=28.38 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=34.7
Q ss_pred cccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEE
Q 015878 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (399)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W 191 (399)
.+...++|..||+.+..+.=+++-|+.-|+|++.. +.|.-
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~-~~i~i 216 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKK-NKIIV 216 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS-SEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCC-CEEEE
Confidence 46889999999999999999999999999999874 44544
No 258
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.08 E-value=1.5e+02 Score=23.49 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 015878 204 DQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (399)
Q Consensus 204 ~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lt 238 (399)
+.++.|+.+...|..+...|.+....+.++|..|.
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44677777777777777777777777777777663
No 259
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=24.06 E-value=62 Score=25.17 Aligned_cols=37 Identities=8% Similarity=0.311 Sum_probs=32.5
Q ss_pred CcccHHHHHHHhcceeeehhhhHHhhhhccceecccCC
Q 015878 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (399)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN 187 (399)
+...+.++|+.|++.+=-++=-+++|+.. +|.+...+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~g 76 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQG 76 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEET
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEeC
Confidence 56899999999999999999999999999 99855333
No 260
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=24.02 E-value=46 Score=30.80 Aligned_cols=43 Identities=9% Similarity=0.234 Sum_probs=38.9
Q ss_pred CCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEE
Q 015878 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (399)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W 191 (399)
++..+..++|+.|++..+-+-..++-|...|+|++...+.|.-
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~~~~~~ 218 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVKIINDNTVVL 218 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETTTEEEE
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecCCeEEe
Confidence 4788999999999999999999999999999999887777654
No 261
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=24.00 E-value=59 Score=26.93 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=35.2
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhh
Q 015878 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (399)
Q Consensus 129 ~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 170 (399)
.+..-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 28 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~ 69 (222)
T 3bru_A 28 ASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYH 69 (222)
T ss_dssp GGGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhh
Confidence 445556788889999988777789999999999999988883
No 262
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=23.98 E-value=3.1e+02 Score=23.36 Aligned_cols=75 Identities=17% Similarity=0.093 Sum_probs=0.0
Q ss_pred ccHHHHHHHhcceeeehhhhHHhhhhcccee-cccCCeeEEecCCCCCCcchHHHHHHHH--------------------
Q 015878 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIE-KTSKNHIRWKGSDSLGTSKLDDQVARLK-------------------- 210 (399)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIgLIe-K~sKN~i~W~G~~~s~~~~~~~~~~~Lk-------------------- 210 (399)
+.+.++|+.+||..|-|. -.|.+|||. ....|.|+.-..+ ++..|+
T Consensus 12 ~~i~e~A~~~gvs~~TLR----~ye~~Gll~p~r~~~g~R~Y~~~---------dl~~l~~I~~lr~~G~sl~eI~~~l~ 78 (154)
T 2zhg_A 12 LTPGEVAKRSGVAVSALH----FYESKGLITSIRNSGNQRRYKRD---------VLRYVAIIKIAQRIGIPLATIGEAFG 78 (154)
T ss_dssp BCHHHHHHHHTSCHHHHH----HHHHTTSSCCEECTTSCEEBCTT---------HHHHHHHHHHHHHHTCCHHHHHHHHC
T ss_pred CCHHHHHHHHCcCHHHHH----HHHHcCCCCcccCCCCCEEeCHH---------HHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_pred -----------HHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 015878 211 -----------AEIESLHAEECRIDDSIREKQELIRTLEE 239 (399)
Q Consensus 211 -----------~El~~L~~~E~~LD~lI~~~~q~Lr~Lte 239 (399)
.-.+-|..+...|++.|..++..+..|..
T Consensus 79 ~~~~~~~~~~~~~~~ll~~~~~~l~~qi~~L~~~~~~L~~ 118 (154)
T 2zhg_A 79 VLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDG 118 (154)
T ss_dssp C-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 263
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=23.75 E-value=2.8e+02 Score=22.12 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=29.1
Q ss_pred HHHHhCCCCcccHHHHHHHh------c--cee-eehhhhHHhhhhccceecc
Q 015878 142 NLIQEAKDGTLDLNRTAEVL------E--VQK-RRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 142 ~Ll~~ap~g~ldLn~aA~~L------~--VqK-RRIYDItNVLEgIgLIeK~ 184 (399)
.+|...| ..-.++++.| . +.. --||-+++-||.-|||++.
T Consensus 20 ~~L~~~~---~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~ 68 (118)
T 2esh_A 20 LLVAEKP---SHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTE 68 (118)
T ss_dssp HHHHHSC---BCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEE
T ss_pred HHHHcCC---CCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEE
Confidence 4555544 4444445555 2 788 9999999999999999886
No 264
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=23.70 E-value=68 Score=26.81 Aligned_cols=39 Identities=8% Similarity=0.193 Sum_probs=33.8
Q ss_pred cccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeE
Q 015878 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (399)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~ 190 (399)
.+...++|..||+.+..+.=+.+-|+.-|+|++. +++|.
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~ 201 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEGVVRLG-PGTVE 201 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec-CCEEE
Confidence 4679999999999999999999999999999876 44443
No 265
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=23.61 E-value=57 Score=28.47 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=33.8
Q ss_pred HHHHHHhCCCCcccHHHHHHHhc--------------ceeeehhhhHHhhhhccceecccC
Q 015878 140 FINLIQEAKDGTLDLNRTAEVLE--------------VQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L~--------------VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
+.+++...+-|. .++|+.++ |++=-|-.++..||..|||++..+
T Consensus 59 lr~~i~~g~~G~---~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~ 116 (150)
T 2v7f_A 59 LRRVYLDGPVGI---ERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPG 116 (150)
T ss_dssp HHHHHHHCSBCH---HHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHhCCCCH---HHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCC
Confidence 344444444444 99999999 776669999999999999998743
No 266
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.48 E-value=21 Score=30.59 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=33.2
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhh
Q 015878 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (399)
Q Consensus 129 ~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 170 (399)
.+..-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 38 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~ 79 (225)
T 2id3_A 38 TARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYR 79 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHH
Confidence 344445666778888887666679999999999999999884
No 267
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=23.44 E-value=52 Score=29.24 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=34.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehh
Q 015878 126 GCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (399)
Q Consensus 126 ~~R~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 169 (399)
..|...+-..+..--++++.+..-.-+.+..+|+++||.+.-||
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY 67 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLY 67 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHH
Confidence 34455566788888999997766667999999999999999999
No 268
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=23.43 E-value=34 Score=22.33 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=19.8
Q ss_pred ccHHHHHHHhcceeeehhhhHH
Q 015878 152 LDLNRTAEVLEVQKRRIYDITN 173 (399)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItN 173 (399)
+.+.++|+.|+|.+.-||-+++
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 7899999999999999998764
No 269
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=23.25 E-value=85 Score=28.31 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=40.9
Q ss_pred HHHHHHHHHHh---CCCCcc-cHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 136 LTkkFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
+...+.+.+.. .++..+ ...++|+.++|+|=-+-..++.|+.-|+|.+...
T Consensus 10 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~g 64 (239)
T 3bwg_A 10 IATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRG 64 (239)
T ss_dssp HHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCC
Confidence 34445555543 467778 8999999999999999999999999999998743
No 270
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.20 E-value=46 Score=28.24 Aligned_cols=46 Identities=13% Similarity=0.365 Sum_probs=38.0
Q ss_pred HHHHHHhCCCCcccHHHHHHHh-----cceeeehhhhHHhhhhccceeccc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+++|..+.++.+...++.+.| .+.+=-+|-.++.|+..|||.|..
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 4566665443688999999998 678888999999999999999973
No 271
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=23.09 E-value=31 Score=30.79 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=34.4
Q ss_pred CCCcccHHHHHHHhcceeeehhhhHHhhhhccceeccc
Q 015878 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 148 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
..+.+.+.++|+.|++.+=-+--.+.-||..||++|..
T Consensus 24 ~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~ 61 (230)
T 3cta_A 24 NRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTV 61 (230)
T ss_dssp SEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34567899999999999999999999999999999973
No 272
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.88 E-value=1.4e+02 Score=23.74 Aligned_cols=33 Identities=9% Similarity=0.260 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 015878 206 VARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (399)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lt 238 (399)
+...+.++..|..+-..|...|..+...+..|.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~ 98 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRID 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554444444444444444444443
No 273
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=22.86 E-value=57 Score=27.64 Aligned_cols=40 Identities=15% Similarity=0.328 Sum_probs=34.7
Q ss_pred cccHHHHHHHhcceeeehhhhHHhhhhccceecc-cCCeeEE
Q 015878 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT-SKNHIRW 191 (399)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~-sKN~i~W 191 (399)
.+...++|..||+.+..+.=+.+-|+.-|+|++. .+ .|.-
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~-~i~i 207 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQR-TLLL 207 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSS-EEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCC-EEEE
Confidence 4678999999999999999999999999999986 44 5543
No 274
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=22.84 E-value=91 Score=30.40 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=34.7
Q ss_pred CcHHHHHHH------HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceec
Q 015878 131 SSLGLLTRK------FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (399)
Q Consensus 131 kSLglLTkk------FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK 183 (399)
+-||.+.-+ .+++|....++.++++++++..++. .-||+..|+.+|++.-
T Consensus 188 SDLG~~sYrsYW~~~il~~L~~~~~~~isi~~is~~T~i~---~~DIi~tL~~l~~l~~ 243 (284)
T 2ozu_A 188 SDLGRLSYMAYWKSVILECLYHQNDKQISIKKLSKLTGIC---PQDITSTLHHLRMLDF 243 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHCBC---HHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHhCCC---HHHHHHHHHHCCCEEe
Confidence 347777632 5566666677889999999999985 5799999999999963
No 275
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=22.83 E-value=68 Score=26.17 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhh
Q 015878 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (399)
Q Consensus 133 LglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 170 (399)
=..|..-.++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 9 r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 46 (195)
T 2dg7_A 9 EQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFR 46 (195)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHH
Confidence 35677778888888766679999999999999988884
No 276
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.43 E-value=4.3e+02 Score=26.47 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 015878 201 KLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (399)
Q Consensus 201 ~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lte 239 (399)
++..++.+|+.|++-|..+++.|.+.++.++.+++.+.+
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~e 84 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQE 84 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888887777777777766554
No 277
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.35 E-value=1.1e+02 Score=23.81 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015878 206 VARLKAEIESLHAEECRIDDSIREKQELIRTL 237 (399)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~L 237 (399)
+..|..++..|+..-..|..-...+.+++..|
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333333333333333
No 278
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.26 E-value=1.5e+02 Score=23.53 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 015878 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (399)
Q Consensus 202 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lte 239 (399)
+...+..++.++..|......+...|..++..+..+..
T Consensus 8 ~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 8 LETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556777888888888888888888888888887754
No 279
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.11 E-value=1.4e+02 Score=23.39 Aligned_cols=30 Identities=7% Similarity=0.099 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015878 206 VARLKAEIESLHAEECRIDDSIREKQELIR 235 (399)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr 235 (399)
|..|+.+...|..+-+.|-..+..++++|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555555555554
No 280
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=22.10 E-value=69 Score=26.31 Aligned_cols=36 Identities=11% Similarity=0.395 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehh
Q 015878 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (399)
Q Consensus 134 glLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 169 (399)
..|...+++++.+..=.-+.+.++|++.||.|.-||
T Consensus 16 ~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 51 (195)
T 2iu5_A 16 KIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFY 51 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGG
T ss_pred HHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHH
Confidence 567778889998876667999999999999999988
No 281
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.02 E-value=1.1e+02 Score=30.82 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 015878 207 ARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (399)
Q Consensus 207 ~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lte 239 (399)
..|++|+..|.++.++|++.|++++..++.+.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~ 38 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKE 38 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666555543
No 282
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.96 E-value=1.1e+02 Score=23.01 Aligned_cols=29 Identities=14% Similarity=0.456 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015878 206 VARLKAEIESLHAEECRIDDSIREKQELI 234 (399)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~L 234 (399)
+..|+.+++.|..+-..|...|..+++++
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777666666666666555544
No 283
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=21.96 E-value=72 Score=25.49 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehh
Q 015878 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (399)
Q Consensus 129 ~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 169 (399)
.+..=..|....++++.+..-.-+.+.++|++.||.|.-||
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y 48 (191)
T 3on4_A 8 ISNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIH 48 (191)
T ss_dssp CCCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhh
Confidence 34455677888889998766667999999999999999888
No 284
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=21.86 E-value=1.9e+02 Score=24.58 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 015878 206 VARLKAEIESLHAEECRIDDSIR 228 (399)
Q Consensus 206 ~~~Lk~El~~L~~~E~~LD~lI~ 228 (399)
.+.|.++++.|....+.|+.+|.
T Consensus 89 ~~~L~~~i~~l~~~l~~l~~~i~ 111 (146)
T 3hh0_A 89 REVLLAEQERIAKVLSHMDEMTK 111 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544
No 285
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=21.83 E-value=68 Score=31.47 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 015878 205 QVARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (399)
Q Consensus 205 ~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lte 239 (399)
.+..+++++..|...-+.++..|..+++++..|..
T Consensus 12 ~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~ 46 (319)
T 1fzc_C 12 SILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 46 (319)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888887777888888888887777754
No 286
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.73 E-value=81 Score=26.66 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=37.9
Q ss_pred HHHHHHhCCCCcccHHHHHHHh-----cceeeehhhhHHhhhhccceeccc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+++|..+ ++.+...++.+.| .+.+=-+|-.++.|+..|||.|..
T Consensus 32 IL~~l~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 32 VVSVLYRS-GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHC-SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEE
Confidence 55667665 4578999999998 688889999999999999999974
No 287
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=21.69 E-value=76 Score=25.37 Aligned_cols=40 Identities=8% Similarity=0.013 Sum_probs=33.9
Q ss_pred CCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehh
Q 015878 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (399)
Q Consensus 130 dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 169 (399)
+..-..|....++++.+..-.-+.+.++|++.||.|.-||
T Consensus 8 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 47 (195)
T 3ppb_A 8 RTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLF 47 (195)
T ss_dssp CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHH
Confidence 3444677888999998877678999999999999999998
No 288
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=21.58 E-value=77 Score=25.84 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=34.8
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehh
Q 015878 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (399)
Q Consensus 128 R~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 169 (399)
|.+..-..|....++++....-.-+.+.++|+..||.|.-||
T Consensus 13 ~~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y 54 (213)
T 2qtq_A 13 ETPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVK 54 (213)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHh
Confidence 344455678888999998877678999999999999998888
No 289
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=20.96 E-value=1e+02 Score=28.64 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHh---CCCCcc-cHHHHHHHhcceeeehhhhHHhhhhccceecccC
Q 015878 135 LLTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (399)
Q Consensus 135 lLTkkFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sK 186 (399)
.+...+.+.+.. .++..+ .-.++|++++|+|=-+-..++.|+.-|+|++...
T Consensus 33 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 88 (272)
T 3eet_A 33 RVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRSG 88 (272)
T ss_dssp HHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 455556666654 366777 8999999999999999999999999999988743
No 290
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=20.77 E-value=54 Score=26.30 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=33.0
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehh
Q 015878 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (399)
Q Consensus 129 ~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 169 (399)
.+..-..|....++++....-.-+.+.++|++.||.|.-||
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 48 (196)
T 3col_A 8 DMNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVY 48 (196)
T ss_dssp --CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHH
Confidence 34445677788889998776667999999999999999888
No 291
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=20.76 E-value=1.3e+02 Score=29.25 Aligned_cols=55 Identities=22% Similarity=0.419 Sum_probs=41.0
Q ss_pred CcHHHHHHH------HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCee
Q 015878 131 SSLGLLTRK------FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHI 189 (399)
Q Consensus 131 kSLglLTkk------FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i 189 (399)
+-||.+.-+ .+++|.+. +..+.++++++..++. .-||+..|+.+|++......++
T Consensus 183 SdLG~~sY~~YW~~~i~~~L~~~-~~~isi~~is~~Tgi~---~~Dii~tL~~l~~l~~~kg~~~ 243 (276)
T 3to7_A 183 SDLGLLSYRAYWSDTLITLLVEH-QKEITIDEISSMTSMT---TTDILHTAKTLNILRYYKGQHI 243 (276)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-CSEEEHHHHHHHHCBC---HHHHHHHHHHTTCEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc-CCceeHHHHHHHhCCC---HHHHHHHHHHCCCEEEeCCcEE
Confidence 347777633 45666554 5689999999999995 5899999999999976544433
No 292
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=20.71 E-value=34 Score=28.54 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhh
Q 015878 131 SSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (399)
Q Consensus 131 kSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 170 (399)
..-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 23 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~ 62 (214)
T 2zb9_A 23 EVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYK 62 (214)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHH
Confidence 3345666778888887666679999999999999999884
No 293
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=20.64 E-value=79 Score=25.89 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=35.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhh
Q 015878 127 CRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (399)
Q Consensus 127 ~R~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 170 (399)
.|....-..|..-.++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 13 ~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (207)
T 2rae_A 13 RRPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFR 56 (207)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHH
T ss_pred cchHhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhh
Confidence 34455556788889999988776789999999999999988883
No 294
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=20.60 E-value=64 Score=31.36 Aligned_cols=49 Identities=20% Similarity=0.453 Sum_probs=33.3
Q ss_pred CcHHHHHHH------HHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceec
Q 015878 131 SSLGLLTRK------FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (399)
Q Consensus 131 kSLglLTkk------FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK 183 (399)
+-||.+.-+ .+++|... .+.++++++++..++ +.-||+..|+.+|++..
T Consensus 183 SdLG~~sYr~YW~~~il~~L~~~-~~~isi~~is~~T~i---~~~Dii~tL~~l~~l~~ 237 (278)
T 2pq8_A 183 SDLGKLSYRSYWSWVLLENLRDF-RGTLSIKDLSQMTSI---TQNDIISTLQSLNMVKY 237 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC--------CHHHHHHHCB---CHHHHHHHHHHTTCEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc-CCCccHHHHHHHhCC---CHHHHHHHHHHCCCEEE
Confidence 347777732 44555443 468999999999999 57999999999999964
No 295
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.58 E-value=83 Score=25.29 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015878 207 ARLKAEIESLHAEECRIDDSIREKQELIR 235 (399)
Q Consensus 207 ~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr 235 (399)
..|+.|+.++...-.++.+.|+++.++|+
T Consensus 47 e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 47 DVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555444455555554444443
No 296
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=20.44 E-value=1e+02 Score=27.57 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHh-----cceeeehhhhHHhhhhccceecc
Q 015878 138 RKFINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKT 184 (399)
Q Consensus 138 kkFI~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIgLIeK~ 184 (399)
++++..+-. +.+++..++..+ ++....+++.++.|+..|||++.
T Consensus 285 ~~~l~~la~---g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 285 VDILRAIAL---GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHHHHHHHT---TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec
Confidence 344444433 346788888777 78888999999999999999986
No 297
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.38 E-value=92 Score=26.50 Aligned_cols=9 Identities=11% Similarity=0.198 Sum_probs=4.5
Q ss_pred HHHHHHHHh
Q 015878 138 RKFINLIQE 146 (399)
Q Consensus 138 kkFI~Ll~~ 146 (399)
-+||..++.
T Consensus 63 l~~I~~lr~ 71 (148)
T 3gpv_A 63 LEMILCLKN 71 (148)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 455555543
No 298
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.29 E-value=82 Score=25.17 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhh
Q 015878 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (399)
Q Consensus 133 LglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 170 (399)
=..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 8 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 45 (191)
T 1sgm_A 8 REKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYH 45 (191)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHH
T ss_pred HHHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHH
Confidence 35677788899988777789999999999999988883
No 299
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=20.28 E-value=71 Score=26.25 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhh
Q 015878 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (399)
Q Consensus 134 glLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 170 (399)
..|...+++++.+..-.-+.+..+|++.||.|.-||=
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (185)
T 2yve_A 7 EMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIY 43 (185)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHH
Confidence 4567788899988777789999999999999999983
No 300
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.25 E-value=96 Score=29.73 Aligned_cols=38 Identities=24% Similarity=0.484 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 015878 203 DDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEEN 240 (399)
Q Consensus 203 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lted 240 (399)
..++..|+.++..|.++.+.|-+.++.++++|..|.+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888888888888887877777777777777653
No 301
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.22 E-value=71 Score=26.70 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=37.8
Q ss_pred HHHHHHhCCCCcccHHHHHHHh-----cceeeehhhhHHhhhhccceeccc
Q 015878 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (399)
Q Consensus 140 FI~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIgLIeK~s 185 (399)
.+++|.+++ +.++..++.+.| .+.+=-+|-.++.|+..|||.|..
T Consensus 19 Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 19 VSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 556776654 589999999998 578889999999999999999974
No 302
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=20.17 E-value=66 Score=27.17 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=33.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhh
Q 015878 127 CRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (399)
Q Consensus 127 ~R~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 170 (399)
.|.+..=..|..-.++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 31 ~~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~tlY~ 74 (221)
T 3g7r_A 31 RTPSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYR 74 (221)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHH
Confidence 34444556677778888887766789999999999999998883
No 303
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=20.16 E-value=70 Score=25.73 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=34.4
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhh
Q 015878 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (399)
Q Consensus 128 R~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 170 (399)
|....-..|..-.++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 5 r~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (183)
T 1zk8_A 5 RIGLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYN 47 (183)
T ss_dssp -CCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHH
Confidence 3344456788888999987766679999999999999998883
No 304
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.15 E-value=1.3e+02 Score=29.49 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHHh
Q 015878 222 RIDDSIREKQELIRTLE 238 (399)
Q Consensus 222 ~LD~lI~~~~q~Lr~Lt 238 (399)
++|..|.++.+.+++++
T Consensus 460 ~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 460 EADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhcccHHHHHH
Confidence 33444444444444433
No 305
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=20.12 E-value=1.3e+02 Score=26.44 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=33.3
Q ss_pred cccHHHHHHHhcceeeehhhhHHhhhhccceecccCCee
Q 015878 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHI 189 (399)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i 189 (399)
.+...++|..||+.+..+.=+++-|+.-|+|++.. +.|
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~-~~i 254 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHG-KTI 254 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS-SEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcC-CEE
Confidence 35789999999999999999999999999999864 444
No 306
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.10 E-value=1.5e+02 Score=29.64 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=16.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 015878 213 IESLHAEECRIDDSIREKQELIRTLEEN 240 (399)
Q Consensus 213 l~~L~~~E~~LD~lI~~~~q~Lr~Lted 240 (399)
.+.|+++-.++++.++..+++++++.++
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 3334444456666667777777776655
Done!