BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015879
         (399 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EX9|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa Lipase
           Complexed With
           Rc-(Rp,Sp)-1,2-Dioctylcarbamoyl-Glycero-3-O-
           Octylphosphonate
          Length = 285

 Score = 36.6 bits (83), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 101/264 (38%), Gaps = 57/264 (21%)

Query: 103 YFVATKKFFSKKGLACHIAKIHSEASVEHNAWELKQYIEELYWGSGK-RVMLLGHSKGG- 160
           Y+        + G   ++ ++    + E    +L Q +EE+   SG+ +V L+GHS GG 
Sbjct: 27  YWFGIPSALRRDGAQVYVTEVSQLDTSEVRGEQLLQQVEEIVALSGQPKVNLIGHSHGGP 86

Query: 161 -VDAAAALSMYWSDLKDKVAGLALVQSPYGGTPVASDILRE------GQIADRETRRIME 213
            +   AA+        D +A    V +P+ G+  A D LR+      G+         + 
Sbjct: 87  TIRYVAAVR------PDLIASATSVGAPHKGSDTA-DFLRQIPPGSAGEAVLSGLVNSLG 139

Query: 214 FLICKLIKG------DIRALEDLTYEKRKEFIMNHKLPEEIPLISFHSEASVAPGVLATM 267
            LI  L  G       + +LE L  E    F  N K P+ IP  +    A    GV    
Sbjct: 140 ALISFLSSGSTGTQNSLGSLESLNSEGAARF--NAKYPQGIPTSACGEGAYKVNGV---- 193

Query: 268 THIAHAELPW---LPLPNFGGEESDNSAQAGRQVPVVIPVSAAMAVCALHLQLRYGEKSD 324
                +   W    PL NF                 + P  A +   +  L  + G  +D
Sbjct: 194 -----SYYSWSGSSPLTNF-----------------LDPSDAFLGASS--LTFKNGTAND 229

Query: 325 GLVTCRDAEVPGSVVVRPNQKLDH 348
           GLV    + +   +V+R N +++H
Sbjct: 230 GLVGTCSSHL--GMVIRDNYRMNH 251


>pdb|1X0U|A Chain A, Crystal Structure Of The Carboxyl Transferase Subunit Of
           Putative Pcc Of Sulfolobus Tokodaii
 pdb|1X0U|B Chain B, Crystal Structure Of The Carboxyl Transferase Subunit Of
           Putative Pcc Of Sulfolobus Tokodaii
 pdb|1X0U|C Chain C, Crystal Structure Of The Carboxyl Transferase Subunit Of
           Putative Pcc Of Sulfolobus Tokodaii
 pdb|1X0U|D Chain D, Crystal Structure Of The Carboxyl Transferase Subunit Of
           Putative Pcc Of Sulfolobus Tokodaii
 pdb|1X0U|E Chain E, Crystal Structure Of The Carboxyl Transferase Subunit Of
           Putative Pcc Of Sulfolobus Tokodaii
 pdb|1X0U|F Chain F, Crystal Structure Of The Carboxyl Transferase Subunit Of
           Putative Pcc Of Sulfolobus Tokodaii
          Length = 522

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 123 IHSEASVEHNAWELKQYIEELYWGSGKRVMLLGHSKGGVDAAAALSMYWSDLK 175
           ++ +  VE    EL+Q  E+ Y G G   +   HSKG + A   L++ + D K
Sbjct: 2   MYEKPPVEKLIEELRQLKEKAYKGGGDERIQFQHSKGKLTARERLALLFDDGK 54


>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
          Length = 316

 Score = 29.3 bits (64), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 126 EASVEHNAWELKQYIEELYWGSGKRVMLLGHSKGGVDAAAALSMYWSDLKDKVAGLALVQ 185
           + S E  A ++   +E +Y      +ML+GHS GG   A A+    S+L   + GL ++ 
Sbjct: 87  DLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGG---AIAVHTASSNLVPSLLGLCMID 143

Query: 186 SPYGGTPVASDILREGQIADRETRRIMEFLICKLIK-GDIRALE 228
              G    A + ++       +T + +E  I   +K G IR LE
Sbjct: 144 VVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLE 187


>pdb|2RAU|A Chain A, Crystal Structure Of A Putative Lipase (Np_343859.1) From
           Sulfolobus Solfataricus At 1.85 A Resolution
          Length = 354

 Score = 28.1 bits (61), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 135 ELKQYIEELYWGSGK-RVMLLGHSKGGVDAAAALSMYWSDLKDKVAGLALVQ 185
           ++K+ +  +   SG+ R+ L G S GG+ A    S+YW   K+ + GL L+ 
Sbjct: 129 DIKEVVSFIKRDSGQERIYLAGESFGGIAALNYSSLYW---KNDIKGLILLD 177


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,258,321
Number of Sequences: 62578
Number of extensions: 509509
Number of successful extensions: 1378
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1376
Number of HSP's gapped (non-prelim): 9
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)