BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015880
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust.
Identities = 225/382 (58%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N
Sbjct: 85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMN 144
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK 204
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V
Sbjct: 205 DLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVK 264
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVA 252
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQDPYFRMTRDVA
Sbjct: 265 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVA 324
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESV 312
PRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++
Sbjct: 325 PRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTI 384
Query: 313 ELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 372
E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL L+
Sbjct: 385 EEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAE 444
Query: 373 HQVARAAVTDEMVDAFMAVRPL 394
HQ R VTDE+V FM R L
Sbjct: 445 HQARRKEVTDEIVKEFMTPRKL 466
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 481 bits (1238), Expect = e-136, Method: Compositional matrix adjust.
Identities = 225/382 (58%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N
Sbjct: 4 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMN 63
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK
Sbjct: 64 QVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK 123
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V
Sbjct: 124 DLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVK 183
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVA 252
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQDPYFRMTRDVA
Sbjct: 184 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVA 243
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESV 312
PRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++
Sbjct: 244 PRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTI 303
Query: 313 ELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 372
E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL L+
Sbjct: 304 EEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAE 363
Query: 373 HQVARAAVTDEMVDAFMAVRPL 394
HQ R VTDE+V FM R L
Sbjct: 364 HQARRKEVTDEIVKEFMTPRKL 385
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 474 bits (1220), Expect = e-134, Method: Compositional matrix adjust.
Identities = 220/373 (58%), Positives = 283/373 (75%), Gaps = 2/373 (0%)
Query: 24 SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83
S+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+ FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 120
Query: 144 LARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V GIFGFT D
Sbjct: 121 YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSD 180
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
IGK+SFP +QA + ++CLIPCAIDQDPYFRMTRDVAPRIGY KPA
Sbjct: 181 CIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA 240
Query: 262 LIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGAN 321
L+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++E HR+ G N
Sbjct: 241 LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGN 300
Query: 322 LEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 381
+VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL L+ HQ R VT
Sbjct: 301 CDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVT 360
Query: 382 DEMVDAFMAVRPL 394
DE+V FM R L
Sbjct: 361 DEIVKEFMTPRKL 373
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 474 bits (1220), Expect = e-134, Method: Compositional matrix adjust.
Identities = 220/373 (58%), Positives = 283/373 (75%), Gaps = 2/373 (0%)
Query: 24 SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83
S+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+ FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 120
Query: 144 LARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V GIFGFT D
Sbjct: 121 YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSD 180
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
IGK+SFP +QA + ++CLIPCAIDQDPYFRMTRDVAPRIGY KPA
Sbjct: 181 CIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA 240
Query: 262 LIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGAN 321
L+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++E HR+ G N
Sbjct: 241 LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGN 300
Query: 322 LEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 381
+VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL L+ HQ R VT
Sbjct: 301 CDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVT 360
Query: 382 DEMVDAFMAVRPL 394
DE+V FM R L
Sbjct: 361 DEIVKEFMTPRKL 373
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 474 bits (1219), Expect = e-134, Method: Compositional matrix adjust.
Identities = 220/373 (58%), Positives = 283/373 (75%), Gaps = 2/373 (0%)
Query: 24 SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83
S+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+ FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK +WK+L+++++
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 120
Query: 144 LARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V GIFGFT D
Sbjct: 121 YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSD 180
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
IGK+SFP +QA + ++CLIPCAIDQDPYFRMTRDVAPRIGY KPA
Sbjct: 181 CIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA 240
Query: 262 LIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGAN 321
L+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++E HR+ G N
Sbjct: 241 LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGN 300
Query: 322 LEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 381
+VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL L+ HQ R VT
Sbjct: 301 CDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVT 360
Query: 382 DEMVDAFMAVRPL 394
DE+V FM R L
Sbjct: 361 DEIVKEFMTPRKL 373
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 465 bits (1197), Expect = e-131, Method: Compositional matrix adjust.
Identities = 221/382 (57%), Positives = 280/382 (73%), Gaps = 4/382 (1%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD N
Sbjct: 85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDXN 144
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA H+GHL+PF+FTK+LQD F VPLVIQ TDDEK +WK
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTKWLQDVFNVPLVIQXTDDEKYLWK 204
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY G FYKN+VK+ K VT+N+V
Sbjct: 205 DLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVK 264
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVA 252
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQDPYFR TRDVA
Sbjct: 265 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRXTRDVA 324
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESV 312
PRIGY KPAL+ S+FFPALQG K SASDPNS+I++TD+ +AFSGG++++
Sbjct: 325 PRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTI 384
Query: 313 ELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 372
E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G LTGE+K+ L +VL L+
Sbjct: 385 EEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGELKKALIEVLQPLIAE 444
Query: 373 HQVARAAVTDEMVDAFMAVRPL 394
HQ R VTDE+V F R L
Sbjct: 445 HQARRKEVTDEIVKEFXTPRKL 466
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 465 bits (1196), Expect = e-131, Method: Compositional matrix adjust.
Identities = 221/382 (57%), Positives = 280/382 (73%), Gaps = 4/382 (1%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD N
Sbjct: 85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDXN 144
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA H+GHL+PF+FTK+LQD F VPLVIQ TDDEK +WK
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTKWLQDVFNVPLVIQXTDDEKYLWK 204
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY G FYKN+VK+ K VT+N+V
Sbjct: 205 DLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVK 264
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVA 252
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQDPYFR TRDVA
Sbjct: 265 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRXTRDVA 324
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESV 312
PRIGY KPAL+ S+FFPALQG K SASDPNS+I++TD+ +AFSGG++++
Sbjct: 325 PRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTI 384
Query: 313 ELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 372
E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G LTGE+K+ L +VL L+
Sbjct: 385 EEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGELKKALIEVLQPLIAE 444
Query: 373 HQVARAAVTDEMVDAFMAVRPL 394
HQ R VTDE+V F R L
Sbjct: 445 HQARRKEVTDEIVKEFXTPRKL 466
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 464 bits (1194), Expect = e-131, Method: Compositional matrix adjust.
Identities = 221/382 (57%), Positives = 280/382 (73%), Gaps = 4/382 (1%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD N
Sbjct: 38 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDXN 97
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
+LDAYE + FYLYTGRGPSSEA H+GHL+PF+FTK+LQD F VPLVIQ TDDEK +WK
Sbjct: 98 QVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTKWLQDVFNVPLVIQXTDDEKYLWK 157
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVV 192
+L+++++ A ENAKDIIACGFD+ KTFIFSD DY G FYKN+VK+ K VT+N+V
Sbjct: 158 DLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVK 217
Query: 193 GIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVA 252
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQDPYFR TRDVA
Sbjct: 218 GIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRXTRDVA 277
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESV 312
PRIGY KPAL+ S+FFPALQG K SASDPNS+I++TD+ +AFSGG++++
Sbjct: 278 PRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTI 337
Query: 313 ELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 372
E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G LTGE+K+ L +VL L+
Sbjct: 338 EEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGELKKALIEVLQPLIAE 397
Query: 373 HQVARAAVTDEMVDAFMAVRPL 394
HQ R VTDE+V F R L
Sbjct: 398 HQARRKEVTDEIVKEFXTPRKL 419
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 406 bits (1044), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/373 (52%), Positives = 260/373 (69%), Gaps = 4/373 (1%)
Query: 19 PWEVSSSGK--IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
PWEV + IDY+KLIDKFGC+ + + +++R++RLTG+ H F RR +F +HRD I
Sbjct: 6 PWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDFEKI 65
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
LD YEKGE FYLYTGRGPSSE+LH+GHLVPF+FTKYLQD FKVPLVIQLTDDEK ++K N
Sbjct: 66 LDVYEKGELFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSN 125
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L++EE+ A EN KDIIACGFD TFIF++ +Y+ Y +++++ K ++ +++ IF
Sbjct: 126 LTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA-ELYPDILRIEKKISCSQIKSIF 184
Query: 196 GFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 255
GF ++GK +FP VQA G+ + CL+P AIDQDPYFRM RDVAPR+
Sbjct: 185 GFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRL 244
Query: 256 GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELH 315
GY KP+ I S F P+LQG KMSAS NS+I+V D+ YAFSGGQ + E
Sbjct: 245 GYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQ 304
Query: 316 RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQV 375
R+LGANL+VD+ +YL F +EDD +LE I K+Y +G ML+GE+K L + L +L + HQ
Sbjct: 305 RRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQK 364
Query: 376 ARAAVTDEMVDAF 388
R A+ D+++ F
Sbjct: 365 NREAINDDVIAKF 377
>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
pdb|3I05|B Chain B, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
Length = 395
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/378 (51%), Positives = 263/378 (69%), Gaps = 5/378 (1%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
VV+PW V G ++YDKLI FG +D++L++R++R+ G+ PH FLRRG+FF+HRDLN
Sbjct: 11 VVTPWSVE--GDVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSHRDLNL 68
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
+LD YE G+ FYLYTGRGPSSE++H+GHL+PFMFTK+LQD+F+VPLVIQ+TDDEK ++N
Sbjct: 69 LLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRN 128
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
+ +E+ + + EN KDIIA GFD TFIF DFDY+ G Y+ + K+ + T ++V G F
Sbjct: 129 IPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM-GCMYRTVAKIERAFTASQVRGCF 187
Query: 196 GFTGEDHIGKVSFPPVQAV-XXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPR 254
GF ED+ G+ FP +QA ++ CLIP AIDQDPYFR+TRD+APR
Sbjct: 188 GFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPR 247
Query: 255 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVEL 314
+GY KPA+I S FFP L G GKMS+S +A+ +TD+ +AFSGG + +
Sbjct: 248 LGYLKPAVIHSKFFPGLSGPKGKMSSSS-GTAVLLTDTEKMVKDKINKHAFSGGGATKQE 306
Query: 315 HRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 374
H LGAN+EVD+P+++LSFFLEDD EL +KKEY G ++TGEVK+ L +T + + HQ
Sbjct: 307 HFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITAITKTHQ 366
Query: 375 VARAAVTDEMVDAFMAVR 392
R VTDE V F + R
Sbjct: 367 EKRKLVTDEDVQLFTSTR 384
>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet
pdb|3KT3|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT6|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT8|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
Length = 438
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/387 (49%), Positives = 260/387 (67%), Gaps = 8/387 (2%)
Query: 16 VVSPWEVSS-------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
VV+PW+V + IDYDKLI +FG + +++ + R +++TGR PH FLR+G+FF
Sbjct: 26 VVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFF 85
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ+ F VPLVI+LTDD
Sbjct: 86 SERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDD 145
Query: 129 EKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 187
EK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GGAFY+ +V+V++ +T
Sbjct: 146 EKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQIT 205
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRM 247
+ +FGF D IGK F +Q D CLIPCAIDQDPYFR+
Sbjct: 206 GSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRV 265
Query: 248 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSG 307
RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+ YAFSG
Sbjct: 266 CRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSG 325
Query: 308 GQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 367
GQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y +G +L+GE+K+ + L
Sbjct: 326 GQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQ 385
Query: 368 ELVERHQVARAAVTDEMVDAFMAVRPL 394
E V+ Q RA V +E +D FM L
Sbjct: 386 EFVKAFQERRAQVDEETLDKFMVPHKL 412
>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl
Trna Synthetase
Length = 432
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/387 (49%), Positives = 260/387 (67%), Gaps = 8/387 (2%)
Query: 16 VVSPWEVSS-------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
VV+PW+V + IDYDKLI +FG + +++ + R +++TGR PH FLR+G+FF
Sbjct: 26 VVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFF 85
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ+ F VPLVI+LTDD
Sbjct: 86 SERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDD 145
Query: 129 EKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 187
EK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GGAFY+ +V+V++ +T
Sbjct: 146 EKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQIT 205
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRM 247
+ +FGF D IGK F +Q D CLIPCAIDQDPYFR+
Sbjct: 206 GSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRV 265
Query: 248 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSG 307
RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+ YAFSG
Sbjct: 266 CRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSG 325
Query: 308 GQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 367
GQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y +G +L+GE+K+ + L
Sbjct: 326 GQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQ 385
Query: 368 ELVERHQVARAAVTDEMVDAFMAVRPL 394
E V+ Q RA V +E +D FM L
Sbjct: 386 EFVKAFQERRAQVDEETLDKFMVPHKL 412
>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
pdb|3TZE|B Chain B, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
Length = 406
Score = 349 bits (895), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 165/381 (43%), Positives = 249/381 (65%), Gaps = 10/381 (2%)
Query: 17 VSPW--EVSSSGK----IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAH 70
++PW EV S+ + IDYDK+I++FGC++ +Q+L DR+++L+G+P H F RRG+ FAH
Sbjct: 27 ITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAH 86
Query: 71 RDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK 130
RD N +LD FYLYTGRGPSS+ +H+GH +PF+ KY+QDAFK+ LVIQ+TDDEK
Sbjct: 87 RDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEK 146
Query: 131 CMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
+WK++ +E++ REN KDI+ GFD T+IFS+ + F +N++K++K + N+
Sbjct: 147 FLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVE-ASHHFEENILKISKTINLNE 205
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRD 250
+ +FGF +IG+V FP + G CL+P A+DQDP+FR+ RD
Sbjct: 206 AIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAAVDQDPFFRLARD 262
Query: 251 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQE 310
A +G KP+ I S P L+G KMSASDPNS+IY+ D+ YA+SGG++
Sbjct: 263 KAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRK 322
Query: 311 SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 370
++E HR+ G +++VD+P +YL +FL+DD ELE + Y G + + E+K++ V+ E V
Sbjct: 323 TLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFV 382
Query: 371 ERHQVARAAVTDEMVDAFMAV 391
R+Q +R VTD+ + AF+ +
Sbjct: 383 SRYQESRKRVTDDDLRAFIDI 403
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 171/416 (41%), Positives = 221/416 (53%), Gaps = 58/416 (13%)
Query: 33 LIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92
+I +FG + L+ R + +TG H LRRG+F+AHRD + L YEKG Y+YTGR
Sbjct: 39 IITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGR 98
Query: 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW-KNLSVEESQRLARENAKD 151
GPSS ALHLGHL+PF+FTKYLQDAFK +VIQ+TDDEK + ++LS E REN KD
Sbjct: 99 GPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKD 158
Query: 152 IIACGFDVTK---------------------------------TFIFSDFDYVGGAFY-- 176
IIACGFD K +F FS+ VG A +
Sbjct: 159 IIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPP 218
Query: 177 KNMVKVAKC----VTYNKVVGIFGFTGEDHIGKVS--------------FPPVQAVXXXX 218
K M+ V + + +V G ED VS PV V
Sbjct: 219 KQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELF 278
Query: 219 XXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKM 278
CLI I+QDPYFR+ RD+APR+G+ K A + F P LQG KM
Sbjct: 279 PDSKRYQKAM----CLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKM 334
Query: 279 SASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDD 338
SASDPNSAIY+TD+ YAFSGG+++ E HR GA+L VD+ V+YL F++DD
Sbjct: 335 SASDPNSAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDD 394
Query: 339 AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 394
AELE +K +Y G +LTGEVK L +L L++ H R V M+++F + L
Sbjct: 395 AELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDTTMIESFTVKKEL 450
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
pdb|3JXE|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
Length = 392
Score = 274 bits (700), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 150/374 (40%), Positives = 219/374 (58%), Gaps = 18/374 (4%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV G +DYDKLI FG L + L+++ LT +F RR FF+HRD + I
Sbjct: 7 VTPWEVE--GVVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLI 64
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L YE+G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K N
Sbjct: 65 LKDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKEN 123
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ ++++R A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++ +F
Sbjct: 124 LTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVF 181
Query: 196 GFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 255
GFT + IG + FP +Q + RCLIP AIDQDPY+R+ RD A +
Sbjct: 182 GFTEQSKIGMIFFPAIQIAPTFF----------ERKRCLIPAAIDQDPYWRLQRDFAESL 231
Query: 256 GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELH 315
GY+K A + S F P+L +GKMSAS P +AIY+TDS + +GG+ +++
Sbjct: 232 GYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQ 291
Query: 316 RKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 374
R+ G E + K+L FF EDD +L+ G + GE K+ L + E ++ HQ
Sbjct: 292 REKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQ 351
Query: 375 VARAAVTDEMVDAF 388
R +++V+ F
Sbjct: 352 RRRKKA-EKLVEKF 364
>pdb|3HZR|A Chain A, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|B Chain B, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|C Chain C, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|D Chain D, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|E Chain E, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|F Chain F, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
Length = 386
Score = 188 bits (477), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 190/362 (52%), Gaps = 5/362 (1%)
Query: 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88
DY++LI+ G + + R+++L+G+ PH +L RGVF A + L+ LD E + ++
Sbjct: 26 DYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFI 85
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAREN 148
+ + P E + L + F +YLQDAF + ++IQ+ DD K + + ++ E+ +++ +
Sbjct: 86 FIQKYPQKE-VALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDL 144
Query: 149 AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSF 208
K I+A GF+ KTFI++D+ Y G Y+ + V K YN V F F D+IGK++
Sbjct: 145 MKYILAFGFNEDKTFIYTDYQYFGK-MYRTISLVEKATAYNVVQPFFNFEYSDNIGKLAS 203
Query: 209 PPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFF 268
P + RCL+ +I + + +A + + +P ++
Sbjct: 204 PSIMTASMFSQSYSHFFSSP--ARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMV 261
Query: 269 PALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPV 328
P L G T SD NS I ++D+ AFSGG+ + E H+KLG ++D+
Sbjct: 262 PLLSGVTKFDIPSDHNS-ILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSF 320
Query: 329 KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 388
+ L+ F D+A+++ ++++Y G +L+GE+K+ ++ + + + + + +T + A+
Sbjct: 321 QLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAY 380
Query: 389 MA 390
++
Sbjct: 381 IS 382
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 109/355 (30%), Positives = 167/355 (47%), Gaps = 26/355 (7%)
Query: 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88
DYD+L+ FG + + L + R G P +RRG+ F HRD + IL+A +GE+ +
Sbjct: 16 DYDRLLRTFGIRPFSEVLP--LLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAV 73
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQ-DAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-R 146
TG PS + H GH + YLQ + FKV + + D E + + EE+ R+A
Sbjct: 74 LTGFMPSGK-FHFGHKLTVDQLIYLQKNGFKV--FVAIADAEAFAVRRIGREEAVRIAVE 130
Query: 147 ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNKVVGIFGFTGEDHIGK 205
E ++IA G D T + F G Y ++++ + VT ++ I+ GE K
Sbjct: 131 EYIANMIALGLDPKDTEFY--FQTNRGTPYFRLIQLFSGKVTAAEMEAIY---GELTPAK 185
Query: 206 VSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----YHKPA 261
+ QA G H+ ++P DQDP+ R+TRD+A R+ +PA
Sbjct: 186 MMASLTQAA-DILHVQLDEYGGYRHV--VVPVGADQDPHLRLTRDLADRMAGVVELERPA 242
Query: 262 LIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGAN 321
P L G KMS+S P+S I++TD A +GG+ + E R+LG
Sbjct: 243 STYHKLQPGLDGR--KMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGV 299
Query: 322 LEVDIPVKYLSFF--LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 374
EV V ++ + + DD E++HI G +L GE KQ + L + HQ
Sbjct: 300 PEV-CSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQ 353
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 24/211 (11%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVE 139
E EK Y G PS E +HLGH++ LQ+A F++ ++ L D + + + E
Sbjct: 28 ETKEKPRAYVGYEPSGE-IHLGHMMTVQKLMDLQEAGFEI--IVLLADIHAYLNEKGTFE 84
Query: 140 ESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFYKNMVKVAKCVTYNKV---VGIF 195
E +A N K IA G D ++ F+ + + +++K+A+ T N+ +
Sbjct: 85 EIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEV 144
Query: 196 GFTGED-HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRC-LIPCAIDQDPYFRMTRDVAP 253
ED + ++ +P +QA+ HL L IDQ + R+ P
Sbjct: 145 SRRKEDPMVSQMIYPLMQALDIA------------HLGVDLAVGGIDQRKIHMLARENLP 192
Query: 254 RIGYHKPALIESSFFPALQGETGKMSASDPN 284
R+GY P + + L G+ KMS+S N
Sbjct: 193 RLGYSSPVCLHTPILVGLDGQ--KMSSSKGN 221
>pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-239629
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-243545
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
Length = 420
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ + D I D K E+ LY G P++++LH+GHL+PF+ + Q+ P+V+
Sbjct: 12 RGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVL 70
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 23/149 (15%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y I
Sbjct: 55 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY-----IGELERMV 106
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
G +++PP+ A ++P DQ + +TRD+A R
Sbjct: 107 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFT 155
Query: 262 LIESSFFPALQGETGKMSASDPNSAIYVT 290
+ E+ +L T KMS SDPN Y+T
Sbjct: 156 IPEARRIMSLVDPTKKMSKSDPNPKAYIT 184
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 23/149 (15%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
G +++PP+ A ++P DQ + +TRD+A R ++K
Sbjct: 104 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAER--FNKRY 150
Query: 262 LIESSFFPALQGETGKMSASDPNSAIYVT 290
+L T KMS SDPN Y+T
Sbjct: 151 FTIPERIMSLVDPTKKMSKSDPNPKAYIT 179
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp
Length = 351
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 119/311 (38%), Gaps = 44/311 (14%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAR 146
+ TG P+ ALHLGHL + + LQD ++ L D + + + E R
Sbjct: 25 VLTGDRPTG-ALHLGHLAGSLQNRVRLQDEAEL---FVLLADVQALTDHFDRPEQ---VR 77
Query: 147 EN----AKDIIACGFDVTKT--FIFSDFDYVG--GAFYKNMVKVA---KCVTYNKVVGIF 195
EN A D +A G D KT + S + ++ N+V V+ + T +
Sbjct: 78 ENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQK 137
Query: 196 GFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 255
G+ G +P QA L+P DQ P TR++ R
Sbjct: 138 GYGERVPAGFFVYPVSQAADIAAFGA-----------TLVPVGDDQLPMLEQTREIVRRF 186
Query: 256 -GYHKPALIES----SFFPALQGETG--KMSASDPNSAIYVTDSXXXXXXXXXXYAFSGG 308
+ P L E S P L G G KMS S N AI + DS G
Sbjct: 187 NALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGN-AIALGDSADEVARKVMGMYTDPG 245
Query: 309 QESVELHRKLGANLEVDIPV-KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 367
++ N PV +L F D A ++ +K +Y AGG+ +VK+ L VL
Sbjct: 246 HLRASDPGRVEGN-----PVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLN 300
Query: 368 ELVERHQVARA 378
++ + RA
Sbjct: 301 GVLAPIRTRRA 311
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
Length = 331
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 119/311 (38%), Gaps = 44/311 (14%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAR 146
+ TG P+ ALHLGHL + + LQD ++ L D + + + E R
Sbjct: 5 VLTGDRPTG-ALHLGHLAGSLQNRVRLQDEAEL---FVLLADVQALTDHFDRPEQ---VR 57
Query: 147 EN----AKDIIACGFDVTKT--FIFSDFDYVG--GAFYKNMVKVA---KCVTYNKVVGIF 195
EN A D +A G D KT + S + ++ N+V V+ + T +
Sbjct: 58 ENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQK 117
Query: 196 GFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 255
G+ G +P QA L+P DQ P TR++ R
Sbjct: 118 GYGERVPAGFFVYPVSQAADIAAFGA-----------TLVPVGDDQLPMLEQTREIVRRF 166
Query: 256 -GYHKPALIES----SFFPALQGETG--KMSASDPNSAIYVTDSXXXXXXXXXXYAFSGG 308
+ P L E S P L G G KMS S N AI + DS G
Sbjct: 167 NALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGN-AIALGDSADEVARKVMGMYTDPG 225
Query: 309 QESVELHRKLGANLEVDIPV-KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 367
++ N PV +L F D A ++ +K +Y AGG+ +VK+ L VL
Sbjct: 226 HLRASDPGRVEGN-----PVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLN 280
Query: 368 ELVERHQVARA 378
++ + RA
Sbjct: 281 GVLAPIRTRRA 291
>pdb|2DLC|X Chain X, Crystal Structure Of The Ternary Complex Of Yeast
Tyrosyl-Trna Synthetase
Length = 394
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 238 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 287
+DQ F + + P +GY K A + + P L + GKMSASDPNS I
Sbjct: 189 GVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGL-AQGGKMSASDPNSKI 237
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
Aeropyrum Pernix
Length = 364
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 26/156 (16%)
Query: 239 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG---------------ETGKMSASDP 283
+DQ + RDVA ++G KP I + +LQG KMS S P
Sbjct: 185 MDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244
Query: 284 NSAIYVTDSXXXXXXXXXXYAFSG----GQESVELHRKL-----GANLEVDIPVKYLSFF 334
+A++V DS G +E+ R + G L VD P KY
Sbjct: 245 ETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPV 304
Query: 335 LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 370
+ E ++++Y G + ++K +A+ L E+V
Sbjct: 305 --EYTSYEELERDYTDGRLHPLDLKNAVAESLIEVV 338
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 23/151 (15%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 55 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 108
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
G +++PP+ A ++P DQ + +TRD+A R A
Sbjct: 109 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFFTIPEA 157
Query: 262 LIES--SFFPALQGETGKMSASDPNSAIYVT 290
I + +L T KMS SDPN Y+T
Sbjct: 158 RIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 188
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 27/155 (17%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
G +++PP+ A ++P DQ + +TRD+A R
Sbjct: 104 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFT 152
Query: 262 LIESSF------FPALQGETGKMSASDPNSAIYVT 290
+ E+ +L T KMS SDPN Y+T
Sbjct: 153 IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 27/155 (17%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
G +++PP+ A ++P DQ + +TRD+A R
Sbjct: 104 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFT 152
Query: 262 LIESSF------FPALQGETGKMSASDPNSAIYVT 290
+ E+ +L T KMS SDPN Y+T
Sbjct: 153 IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 27/155 (17%)
Query: 146 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 201
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 202 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
G +++PP+ A ++P DQ + +TRD+A R
Sbjct: 104 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFT 152
Query: 262 LIESSF------FPALQGETGKMSASDPNSAIYVT 290
+ E+ +L T KMS SDPN Y+T
Sbjct: 153 IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|2JAN|A Chain A, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|B Chain B, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|C Chain C, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|D Chain D, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
Length = 432
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ DL+ + ++G +Y G P++ +LH GHLVP + + Q A P+V+
Sbjct: 12 RGLIAQSTDLDTLAAEAQRG-PMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVL 70
>pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With
Tyrosine
Length = 322
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
LY G P++++LHLGHLVP + K Q A P+ +
Sbjct: 36 LYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 71
>pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
pdb|1VBM|B Chain B, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
Length = 318
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
LY G P++++LHLGHLVP + K Q A P+ +
Sbjct: 32 LYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 67
>pdb|1TYC|A Chain A, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL P + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAPILTMRRFQQAGHRPIAL 68
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 20/222 (9%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTD--DEKCMWKNLS 137
+ G F Y G PS +H+ L+ M T + + ++I + D + + N
Sbjct: 36 DSGRIFTAYNGFEPSGR-IHIAQALITVMNTNNMIECGG-QMIIYIADWFAKMNLKMNGD 93
Query: 138 VEESQRLARENAKDIIACGFDVTKT-FIF-SDFDYVGGAFYKNMVKVAKCVTYNKV---V 192
+ + + L R + ACG ++ T FI+ S+F ++ + M+ +A+ T ++V
Sbjct: 94 INKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCC 153
Query: 193 GIFGFTGEDHI--GKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRD 250
I G D + ++ +P +QA G D + IDQ + +
Sbjct: 154 QIMGRNESDCLKASQIFYPCMQAADVFELVPE----GID----ICQLGIDQRKVNMLAIE 205
Query: 251 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 292
A G P + +L G KMS SDP AI++ D+
Sbjct: 206 YANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT 247
>pdb|1VBN|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
pdb|1VBN|B Chain B, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
Length = 318
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
L G P++++LHLGHLVP + K Q A P+ +
Sbjct: 32 LVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 67
>pdb|1WQ4|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With L- Tyrosine
Length = 321
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
L G P++++LHLGHLVP + K Q A P+ +
Sbjct: 35 LVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 70
>pdb|1WQ3|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Comlexed
With 3-Iodo- L-Tyrosine
pdb|2YXN|A Chain A, Structual Basis Of Azido-Tyrosine Recognition By
Engineered Bacterial Tyrosyl-Trna Synthetase
Length = 322
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
L G P++++LHLGHLVP + K Q A P+ +
Sbjct: 36 LVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVAL 71
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 30/154 (19%)
Query: 153 IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK------- 205
+A G D T+ +F + A M++ C+ Y + E GK
Sbjct: 66 LAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVYIGELERMTQFKEKSAGKEAVSAGL 122
Query: 206 VSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKPALI 263
+++PP+ A ++P DQ + +TRD+A R Y + I
Sbjct: 123 LTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYGELFTI 171
Query: 264 ESSFFP-------ALQGETGKMSASDPNSAIYVT 290
+ P +L T KMS SDPN Y+T
Sbjct: 172 PEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 205
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 234 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 284
++P DQ + +TRD+A R Y + I + P +L T KMS SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPN 199
Query: 285 SAIYVT 290
Y+T
Sbjct: 200 PKAYIT 205
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 239 IDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDS 292
+DQ + R+ IG KP ++ L+ KMS SDP+SAI++ D+
Sbjct: 191 LDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDT 245
>pdb|1TYD|E Chain E, Structure Of Tyrosyl-Trna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 319
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLASILTMRRFQQAGHRPIAL 68
>pdb|1TYA|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAAILTMRRFQQAGHRPIAL 68
>pdb|2TS1|A Chain A, Structure Of Tyrosyl-TRNA SYNTHETASE REFINED AT 2.3
ANGSTROMS Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
pdb|3TS1|A Chain A, Structure Of Tyrosyl-t/rna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 419
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIAL 68
>pdb|4TS1|A Chain A, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
pdb|4TS1|B Chain B, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
Length = 319
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIAL 68
>pdb|1TYB|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAGILTMRRFQQAGHRPIAL 68
>pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution.
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
Length = 814
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 141 SQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-----AFYKNMVKVAKCVT 187
+Q+L NAK+I A D +TF++ D D + A Y+ + +AK +T
Sbjct: 110 NQKLDETNAKNIEAIKLDSNRTFLWKDLDNLNNSAQLTATYRRLEDLAKQIT 161
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
pdb|3PRH|B Chain B, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
Length = 388
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 34/175 (19%)
Query: 136 LSVEESQRLARENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY-NK 190
++V + + R+N +++ +A G D K +F + A M++ CV Y +
Sbjct: 79 ITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQ---CVAYIGE 135
Query: 191 VVGIFGFT----GEDHI--GKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPY 244
+ + F G + + G +++PP+ A G D L+P DQ +
Sbjct: 136 LERMTQFKDKSKGNEAVVSGLLTYPPLMAADILLY-------GTD----LVPPGEDQKQH 184
Query: 245 FRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPNSAIYVT 290
+TR++A R Y+ I P +L KMS SDPN Y+T
Sbjct: 185 LELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYIT 239
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
Length = 328
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 234 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 284
++P DQ + +TRD+A R Y + I + P +L T K S SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIXSLVDPTKKXSKSDPN 199
Query: 285 SAIYVT 290
Y+T
Sbjct: 200 PKAYIT 205
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|B Chain B, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|C Chain C, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|D Chain D, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|E Chain E, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|F Chain F, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|G Chain G, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|H Chain H, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|I Chain I, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|J Chain J, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|K Chain K, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|L Chain L, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|M Chain M, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|N Chain N, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|O Chain O, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|P Chain P, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|Q Chain Q, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|R Chain R, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
Length = 326
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 234 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 284
++P DQ + +TRD+A R Y + I + P +L T K S SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIXSLVDPTKKXSKSDPN 199
Query: 285 SAIYVT 290
Y+T
Sbjct: 200 PKAYIT 205
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 86/221 (38%), Gaps = 47/221 (21%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM-----WKNLS----- 137
+ +G P+ + LH+GHLV A + + +Q +E C W L+
Sbjct: 15 ILSGMRPTGK-LHIGHLV---------GALENWVKLQEEGNE-CFYFVADWHALTTHYDD 63
Query: 138 VEESQRLARENAKDIIACGFDVTKTFIFSDF---DYVGGAFYKNMV----KVAKCVTYNK 190
V + + R+ + +ACG D K+ IF ++ A +M+ ++ + TY +
Sbjct: 64 VSKLKEYTRDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKE 123
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRD 250
+ + G + +P +QA +P DQ + +TR+
Sbjct: 124 IKSELNYKDLSTAGFLIYPVLQAADILIYKAEG-----------VPVGEDQVYHIELTRE 172
Query: 251 VAPRIGY------HKPALIESSFFPALQGETG-KMSASDPN 284
+A R Y +P I S P L G G KMS S N
Sbjct: 173 IARRFNYLYDEVFPEPEAILSR-VPKLPGTDGRKMSKSYGN 212
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 260 PALIESSFFPALQGETGKMSASDPNSAIYVTDS 292
P ++ P L KMS SD NSAI++ DS
Sbjct: 230 PVILSHGMLPGLLEGQEKMSKSDENSAIFMDDS 262
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 349 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 382
G G ++T E+ + AK+L+E +ER V+ A VT+
Sbjct: 129 GKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN 162
>pdb|1Y42|X Chain X, Crystal Structure Of A C-Terminally Truncated Cyt-18
Protein
pdb|2RKJ|A Chain A, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|B Chain B, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|E Chain E, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|F Chain F, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|I Chain I, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|J Chain J, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|M Chain M, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|N Chain N, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
Length = 392
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 89 YTGRGPSSEALHLGHLVPFM--FTKYLQ 114
Y G P++ +LH+GHL+P M F YL+
Sbjct: 68 YVGIDPTAPSLHVGHLLPLMPLFWMYLE 95
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 239 IDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDS 292
+DQ + R+ IG KP ++ L+ K S SDP+SAI+ D+
Sbjct: 191 LDQRKVNXLAREYCDLIGRKLKPVILSHHXLAGLKQGQAKXSKSDPDSAIFXEDT 245
>pdb|2Y50|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum At 2.80 Angstrom Resolution
pdb|2Y6I|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum In Complex With
Isoamylphosphonyl-Gly-Pro-Ala At 3.25 Angstrom
Resolution
Length = 785
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 167 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT 198
DF+Y+ G Y + + K + +N++ G+F ++
Sbjct: 25 DFEYLNGLSYTELTNLIKNIKWNQINGLFNYS 56
>pdb|2Y3U|A Chain A, Crystal Structure Of Apo Collagenase G From Clostridium
Histolyticum At 2.55 Angstrom Resolution
Length = 785
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 167 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT 198
DF+Y+ G Y + + K + +N++ G+F ++
Sbjct: 25 DFEYLNGLSYTELTNLIKNIKWNQINGLFNYS 56
>pdb|3IZB|A Chain A, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|A Chain A, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|A Chain A, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|A Chain A, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|A Chain A, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 252
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
KF +TG P + G P FT Y+ +FK P ++ +TD
Sbjct: 88 KFAAHTGATPIA-----GRFTPGSFTNYITRSFKEPRLVIVTD 125
>pdb|1S1H|B Chain B, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 185
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
KF +TG P + G P FT Y+ +FK P ++ +TD
Sbjct: 75 KFAAHTGATPIA-----GRFTPGSFTNYITRSFKEPRLVIVTD 112
>pdb|3JYV|B Chain B, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 193
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
KF +TG P + G P FT Y+ +FK P ++ +TD
Sbjct: 80 KFAAHTGATPIA-----GRFTPGSFTNYITRSFKEPRLVIVTD 117
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 316 RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH-- 373
R+LGA+ + +P Y+ E + + + AG GE+ A+V+TE+V
Sbjct: 25 RELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFD 84
Query: 374 ------QVARAAVTDEMVDAFMAVR 392
+ A VT ++ A +AVR
Sbjct: 85 KVPAAIEGCDAVVTTGLLPAAVAVR 109
>pdb|1PN3|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PN3|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PNV|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
pdb|1PNV|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
Length = 404
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 316 RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH-- 373
R+LGA+ + +P Y+ E + + + AG GE+ A+V+TE+V
Sbjct: 25 RELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFD 84
Query: 374 ------QVARAAVTDEMVDAFMAVR 392
+ A VT ++ A +AVR
Sbjct: 85 KVPAAIEGCDAVVTTGLLPAAVAVR 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,990,633
Number of Sequences: 62578
Number of extensions: 436840
Number of successful extensions: 1167
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1080
Number of HSP's gapped (non-prelim): 68
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)