Query 015880
Match_columns 399
No_of_seqs 241 out of 1754
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 01:45:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2145 Cytoplasmic tryptophan 100.0 6E-121 1E-125 856.1 28.5 390 7-396 5-397 (397)
2 PLN02486 aminoacyl-tRNA ligase 100.0 2E-107 4E-112 817.2 35.3 381 15-395 1-383 (383)
3 PRK12285 tryptophanyl-tRNA syn 100.0 1.9E-93 4.2E-98 714.4 32.5 361 13-394 2-367 (368)
4 COG0180 TrpS Tryptophanyl-tRNA 100.0 3.7E-68 8E-73 516.4 25.8 290 83-391 3-310 (314)
5 TIGR00233 trpS tryptophanyl-tR 100.0 6.2E-64 1.3E-68 496.3 26.7 293 84-392 1-307 (328)
6 PRK08560 tyrosyl-tRNA syntheta 100.0 9.9E-64 2.2E-68 495.7 26.1 297 59-381 5-324 (329)
7 PRK00927 tryptophanyl-tRNA syn 100.0 8E-63 1.7E-67 489.8 24.0 285 87-392 3-309 (333)
8 PRK12282 tryptophanyl-tRNA syn 100.0 3.9E-62 8.4E-67 483.9 24.4 287 86-392 3-308 (333)
9 cd00806 TrpRS_core catalytic c 100.0 2.6E-61 5.7E-66 468.6 23.7 264 87-369 1-280 (280)
10 PRK12556 tryptophanyl-tRNA syn 100.0 1.3E-59 2.9E-64 465.3 25.6 283 86-392 4-310 (332)
11 PTZ00126 tyrosyl-tRNA syntheta 100.0 6.9E-58 1.5E-62 459.9 27.9 295 60-380 42-366 (383)
12 PRK13354 tyrosyl-tRNA syntheta 100.0 1.5E-57 3.2E-62 462.2 28.5 290 60-382 8-318 (410)
13 PRK12283 tryptophanyl-tRNA syn 100.0 1.1E-57 2.4E-62 455.6 25.7 284 87-391 4-374 (398)
14 PLN02886 aminoacyl-tRNA ligase 100.0 1.6E-57 3.4E-62 455.0 24.8 282 86-391 47-362 (389)
15 PRK05912 tyrosyl-tRNA syntheta 100.0 1E-56 2.3E-61 456.3 27.3 290 59-382 8-320 (408)
16 PRK12284 tryptophanyl-tRNA syn 100.0 1.3E-56 2.7E-61 451.4 25.8 282 85-391 2-309 (431)
17 cd00805 TyrRS_core catalytic c 100.0 5.2E-56 1.1E-60 429.4 20.9 249 87-369 2-269 (269)
18 PF00579 tRNA-synt_1b: tRNA sy 100.0 7.5E-56 1.6E-60 433.2 14.0 273 82-371 2-292 (292)
19 PTZ00348 tyrosyl-tRNA syntheta 100.0 5.2E-54 1.1E-58 455.1 28.5 307 60-381 8-341 (682)
20 cd00395 Tyr_Trp_RS_core cataly 100.0 2E-54 4.3E-59 418.8 21.2 251 87-369 1-273 (273)
21 KOG2713 Mitochondrial tryptoph 100.0 4.4E-49 9.6E-54 370.0 19.5 286 85-392 13-323 (347)
22 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 6.7E-48 1.5E-52 388.2 22.9 281 59-379 6-301 (377)
23 COG0162 TyrS Tyrosyl-tRNA synt 100.0 4.5E-47 9.8E-52 381.1 24.7 299 59-392 7-320 (401)
24 KOG2144 Tyrosyl-tRNA synthetas 100.0 1.6E-42 3.5E-47 326.3 18.7 297 60-382 11-336 (360)
25 KOG2623 Tyrosyl-tRNA synthetas 100.0 1.5E-42 3.2E-47 337.9 14.6 290 59-377 34-356 (467)
26 PTZ00348 tyrosyl-tRNA syntheta 100.0 3.7E-35 8E-40 311.7 21.7 243 111-378 400-661 (682)
27 cd00802 class_I_aaRS_core cata 99.4 1.6E-12 3.5E-17 114.1 9.7 65 208-282 78-143 (143)
28 cd00808 GluRS_core catalytic c 99.2 6.9E-11 1.5E-15 112.5 11.4 155 93-287 9-172 (239)
29 PRK00750 lysK lysyl-tRNA synth 99.0 9.2E-09 2E-13 108.3 18.0 207 74-291 13-293 (510)
30 cd00674 LysRS_core_class_I cat 98.9 4.7E-08 1E-12 98.2 14.7 207 74-291 9-288 (353)
31 cd00418 GlxRS_core catalytic c 98.8 2.9E-08 6.3E-13 94.0 11.2 152 93-285 9-161 (230)
32 TIGR00467 lysS_arch lysyl-tRNA 98.4 3.4E-06 7.4E-11 88.8 13.2 198 84-291 18-287 (515)
33 PF01921 tRNA-synt_1f: tRNA sy 97.7 0.00013 2.9E-09 73.2 9.4 205 83-297 22-306 (360)
34 cd09287 GluRS_non_core catalyt 97.7 0.00023 5E-09 68.0 10.1 165 90-283 6-172 (240)
35 TIGR00464 gltX_bact glutamyl-t 97.7 0.0021 4.5E-08 67.4 17.1 63 234-300 200-268 (470)
36 PRK14895 gltX glutamyl-tRNA sy 97.6 0.0022 4.7E-08 67.6 16.7 117 234-367 199-331 (513)
37 COG1384 LysS Lysyl-tRNA synthe 97.6 0.00091 2E-08 69.5 13.6 106 84-193 19-156 (521)
38 PRK01406 gltX glutamyl-tRNA sy 97.5 0.0034 7.3E-08 66.0 16.1 54 234-291 210-263 (476)
39 PRK01611 argS arginyl-tRNA syn 97.5 0.00042 9.1E-09 73.3 9.4 62 233-295 275-339 (507)
40 cd00672 CysRS_core catalytic c 97.5 0.00097 2.1E-08 62.7 10.5 76 83-159 19-105 (213)
41 PRK04156 gltX glutamyl-tRNA sy 97.4 0.0019 4.2E-08 68.8 12.8 79 84-171 100-179 (567)
42 cd00807 GlnRS_core catalytic c 97.4 0.001 2.3E-08 63.4 9.7 158 93-284 9-171 (238)
43 PLN02627 glutamyl-tRNA synthet 97.3 0.0071 1.5E-07 64.0 16.2 63 234-300 252-320 (535)
44 PRK05710 glutamyl-Q tRNA(Asp) 97.3 0.0031 6.7E-08 62.3 12.3 69 93-171 13-82 (299)
45 COG0008 GlnS Glutamyl- and glu 97.2 0.0052 1.1E-07 64.2 12.8 50 233-284 208-257 (472)
46 PRK00260 cysS cysteinyl-tRNA s 97.1 0.0046 1E-07 64.7 12.0 75 85-160 23-110 (463)
47 PRK12410 glutamylglutaminyl-tR 97.0 0.044 9.5E-07 56.9 18.0 68 93-171 7-75 (433)
48 TIGR03838 queuosine_YadB gluta 96.8 0.013 2.9E-07 57.1 11.5 69 93-171 8-77 (272)
49 cd00671 ArgRS_core catalytic c 96.8 0.0054 1.2E-07 57.4 8.2 46 236-283 164-212 (212)
50 PLN03233 putative glutamate-tR 96.7 0.015 3.2E-07 61.5 11.4 73 88-171 12-87 (523)
51 COG0215 CysS Cysteinyl-tRNA sy 96.6 0.012 2.6E-07 61.0 9.8 72 86-158 23-106 (464)
52 PLN02859 glutamine-tRNA ligase 96.6 0.086 1.9E-06 58.2 16.8 90 71-171 249-340 (788)
53 PLN02907 glutamate-tRNA ligase 96.6 0.095 2.1E-06 57.8 17.1 73 88-171 214-289 (722)
54 PTZ00402 glutamyl-tRNA synthet 96.5 0.032 6.9E-07 59.9 12.6 74 88-171 53-129 (601)
55 TIGR00435 cysS cysteinyl-tRNA 96.2 0.036 7.9E-07 58.1 10.7 76 83-160 20-107 (465)
56 PRK12558 glutamyl-tRNA synthet 96.1 0.038 8.3E-07 57.5 10.6 68 93-171 10-78 (445)
57 TIGR00234 tyrS tyrosyl-tRNA sy 96.0 0.0044 9.6E-08 63.2 2.9 63 246-310 196-263 (377)
58 cd00668 Ile_Leu_Val_MetRS_core 94.5 0.031 6.7E-07 55.3 3.5 55 234-291 229-286 (312)
59 PRK05347 glutaminyl-tRNA synth 93.9 0.38 8.2E-06 51.4 10.2 86 76-171 18-106 (554)
60 TIGR00463 gltX_arch glutamyl-t 93.0 0.22 4.9E-06 53.3 6.8 73 88-171 94-169 (560)
61 PRK14703 glutaminyl-tRNA synth 92.9 0.61 1.3E-05 51.8 10.1 86 76-171 20-108 (771)
62 PF00749 tRNA-synt_1c: tRNA sy 91.7 0.37 8.1E-06 48.0 6.1 52 233-286 201-252 (314)
63 PTZ00437 glutaminyl-tRNA synth 91.6 0.4 8.6E-06 51.3 6.5 77 85-172 51-128 (574)
64 TIGR00440 glnS glutaminyl-tRNA 91.6 0.47 1E-05 50.4 7.0 69 93-171 8-77 (522)
65 COG0162 TyrS Tyrosyl-tRNA synt 91.4 0.24 5.3E-06 50.9 4.5 102 275-379 231-356 (401)
66 cd00818 IleRS_core catalytic c 91.3 0.19 4.2E-06 50.4 3.7 54 234-291 255-312 (338)
67 PRK00133 metG methionyl-tRNA s 90.7 0.72 1.6E-05 50.7 7.7 76 84-160 2-89 (673)
68 TIGR00456 argS arginyl-tRNA sy 89.2 0.39 8.4E-06 51.7 4.1 58 234-295 331-389 (566)
69 cd00817 ValRS_core catalytic c 89.2 0.31 6.6E-06 49.8 3.1 55 234-291 299-356 (382)
70 cd00812 LeuRS_core catalytic c 89.1 0.22 4.9E-06 49.4 2.0 54 234-291 227-288 (314)
71 PLN02224 methionine-tRNA ligas 89.0 0.8 1.7E-05 49.8 6.2 94 63-160 51-156 (616)
72 KOG1147 Glutamyl-tRNA syntheta 88.0 1.1 2.5E-05 47.2 6.2 65 90-163 205-270 (712)
73 cd02156 nt_trans nucleotidyl t 87.6 1.4 3E-05 36.3 5.5 63 89-158 3-65 (105)
74 KOG0432 Valyl-tRNA synthetase 86.6 1.5 3.2E-05 48.8 6.5 51 234-288 549-603 (995)
75 PRK11893 methionyl-tRNA synthe 86.4 0.41 8.8E-06 50.5 2.1 54 234-291 257-312 (511)
76 PF00133 tRNA-synt_1: tRNA syn 86.3 0.6 1.3E-05 50.6 3.4 54 234-290 517-573 (601)
77 PRK00390 leuS leucyl-tRNA synt 86.3 1.6 3.6E-05 48.9 6.9 90 60-160 17-119 (805)
78 PRK13804 ileS isoleucyl-tRNA s 85.9 0.77 1.7E-05 52.5 4.1 54 234-290 586-642 (961)
79 TIGR00392 ileS isoleucyl-tRNA 85.7 0.68 1.5E-05 52.3 3.6 55 234-291 567-624 (861)
80 COG0143 MetG Methionyl-tRNA sy 85.5 2 4.2E-05 46.2 6.7 74 84-158 5-90 (558)
81 COG0018 ArgS Arginyl-tRNA synt 85.4 3.9 8.4E-05 44.2 8.9 67 233-300 337-405 (577)
82 PRK05743 ileS isoleucyl-tRNA s 85.3 0.78 1.7E-05 52.2 3.8 52 234-289 548-603 (912)
83 PF09334 tRNA-synt_1g: tRNA sy 84.8 1.6 3.5E-05 44.8 5.5 55 233-291 284-340 (391)
84 cd00814 MetRS_core catalytic c 84.1 0.73 1.6E-05 45.8 2.6 54 234-291 238-293 (319)
85 PRK12268 methionyl-tRNA synthe 83.2 2.6 5.6E-05 45.1 6.5 71 88-160 6-91 (556)
86 COG0060 IleS Isoleucyl-tRNA sy 82.6 2 4.4E-05 48.6 5.5 59 234-299 558-619 (933)
87 PRK00133 metG methionyl-tRNA s 81.6 8.9 0.00019 42.2 10.0 52 234-291 287-342 (673)
88 PRK12451 arginyl-tRNA syntheta 81.5 1.6 3.5E-05 46.9 4.2 58 234-295 328-388 (562)
89 PRK11893 methionyl-tRNA synthe 81.5 4.3 9.3E-05 42.8 7.3 65 94-160 12-88 (511)
90 PF09334 tRNA-synt_1g: tRNA sy 80.8 0.7 1.5E-05 47.5 1.0 64 94-159 10-85 (391)
91 TIGR00398 metG methionyl-tRNA 80.8 1.4 3.1E-05 46.8 3.4 54 234-291 285-340 (530)
92 PRK13208 valS valyl-tRNA synth 80.3 1.5 3.3E-05 49.2 3.5 54 234-291 489-546 (800)
93 PRK06039 ileS isoleucyl-tRNA s 80.1 1.6 3.6E-05 50.0 3.8 55 234-291 548-605 (975)
94 TIGR00398 metG methionyl-tRNA 80.1 3.4 7.3E-05 44.0 6.0 66 94-160 10-86 (530)
95 PRK12300 leuS leucyl-tRNA synt 79.8 11 0.00024 42.9 10.3 53 234-291 533-590 (897)
96 TIGR00422 valS valyl-tRNA synt 79.3 1.7 3.6E-05 49.2 3.5 54 234-291 481-538 (861)
97 PRK12267 methionyl-tRNA synthe 79.3 1.1 2.4E-05 49.0 2.0 54 234-291 257-312 (648)
98 PRK12268 methionyl-tRNA synthe 79.1 1.4 3E-05 47.2 2.7 54 234-291 290-347 (556)
99 PLN02843 isoleucyl-tRNA synthe 78.8 2 4.4E-05 49.2 4.0 52 234-289 567-622 (974)
100 PRK05729 valS valyl-tRNA synth 77.2 2 4.4E-05 48.7 3.4 54 234-291 476-533 (874)
101 TIGR00396 leuS_bact leucyl-tRN 76.8 8.1 0.00018 43.7 8.0 91 60-159 13-115 (842)
102 PRK12267 methionyl-tRNA synthe 76.4 8.4 0.00018 42.2 7.8 76 84-160 4-91 (648)
103 PLN02946 cysteine-tRNA ligase 76.2 10 0.00023 40.8 8.2 73 84-158 79-164 (557)
104 PRK14900 valS valyl-tRNA synth 75.9 2.3 4.9E-05 49.2 3.4 54 234-291 494-551 (1052)
105 PLN02286 arginine-tRNA ligase 75.6 4.1 8.9E-05 44.0 5.0 60 233-295 330-395 (576)
106 PLN02959 aminoacyl-tRNA ligase 75.0 2.8 6.1E-05 48.7 3.8 54 234-291 674-731 (1084)
107 PRK12418 cysteinyl-tRNA synthe 74.2 2.7 6E-05 43.1 3.1 71 85-157 9-92 (384)
108 PLN02943 aminoacyl-tRNA ligase 74.2 2.4 5.1E-05 48.6 2.9 54 234-291 539-596 (958)
109 PLN02563 aminoacyl-tRNA ligase 74.2 1.9 4.1E-05 49.3 2.1 13 277-290 723-735 (963)
110 PF01406 tRNA-synt_1e: tRNA sy 74.0 9 0.00019 38.0 6.5 74 84-159 7-93 (300)
111 PLN02882 aminoacyl-tRNA ligase 73.9 2.6 5.7E-05 49.2 3.2 51 234-288 570-624 (1159)
112 COG0495 LeuS Leucyl-tRNA synth 73.7 6 0.00013 44.4 5.8 90 59-160 16-121 (814)
113 PLN02381 valyl-tRNA synthetase 73.5 3.1 6.7E-05 48.2 3.7 54 234-291 611-668 (1066)
114 cd00814 MetRS_core catalytic c 72.7 10 0.00022 37.6 6.7 66 94-160 11-87 (319)
115 PLN02224 methionine-tRNA ligas 72.7 2.9 6.3E-05 45.5 3.1 54 234-291 324-379 (616)
116 PF06543 Lac_bphage_repr: Lact 72.7 3.1 6.8E-05 29.6 2.1 31 26-57 16-46 (49)
117 TIGR00395 leuS_arch leucyl-tRN 71.8 3 6.5E-05 47.7 3.0 53 234-291 576-633 (938)
118 PRK12418 cysteinyl-tRNA synthe 71.6 14 0.0003 38.0 7.5 24 265-291 251-274 (384)
119 PF00750 tRNA-synt_1d: tRNA sy 71.1 2.3 5E-05 43.0 1.7 63 233-298 241-308 (354)
120 TIGR03447 mycothiol_MshC cyste 70.6 3.6 7.9E-05 42.6 3.0 69 88-158 40-120 (411)
121 PTZ00427 isoleucine-tRNA ligas 70.3 4.7 0.0001 47.3 4.2 52 234-288 676-730 (1205)
122 cd00812 LeuRS_core catalytic c 69.8 8.7 0.00019 38.1 5.5 65 94-160 11-87 (314)
123 PF01406 tRNA-synt_1e: tRNA sy 69.2 1.9 4.1E-05 42.7 0.6 50 237-291 212-265 (300)
124 KOG0437 Leucyl-tRNA synthetase 68.6 10 0.00023 41.8 6.0 33 347-380 777-809 (1080)
125 cd00668 Ile_Leu_Val_MetRS_core 68.2 10 0.00022 37.4 5.6 43 86-130 2-50 (312)
126 PTZ00419 valyl-tRNA synthetase 67.8 4.3 9.4E-05 46.7 3.2 52 234-289 541-596 (995)
127 PRK14536 cysS cysteinyl-tRNA s 66.7 19 0.00041 38.2 7.5 74 84-159 22-118 (490)
128 TIGR03447 mycothiol_MshC cyste 66.6 18 0.0004 37.4 7.2 25 264-291 277-301 (411)
129 COG0143 MetG Methionyl-tRNA sy 66.2 5 0.00011 43.2 3.1 55 234-291 291-346 (558)
130 TIGR00396 leuS_bact leucyl-tRN 65.9 2.8 6E-05 47.4 1.2 14 277-291 604-617 (842)
131 PRK14534 cysS cysteinyl-tRNA s 65.9 21 0.00045 37.9 7.5 74 85-160 21-117 (481)
132 PLN02610 probable methionyl-tR 64.5 4.4 9.6E-05 45.5 2.4 54 234-291 304-361 (801)
133 PLN02610 probable methionyl-tR 64.4 20 0.00044 40.3 7.6 76 84-160 17-105 (801)
134 COG0495 LeuS Leucyl-tRNA synth 63.1 61 0.0013 36.6 10.8 24 265-291 569-592 (814)
135 PTZ00399 cysteinyl-tRNA-synthe 61.7 23 0.00049 39.0 7.2 75 84-159 59-147 (651)
136 cd00818 IleRS_core catalytic c 61.4 17 0.00037 36.5 5.7 44 85-129 2-50 (338)
137 KOG0435 Leucyl-tRNA synthetase 61.0 21 0.00045 39.2 6.5 63 59-131 40-106 (876)
138 COG0525 ValS Valyl-tRNA synthe 60.7 10 0.00022 42.7 4.4 51 234-288 481-535 (877)
139 cd00817 ValRS_core catalytic c 60.4 21 0.00045 36.4 6.3 43 86-129 3-50 (382)
140 PRK14535 cysS cysteinyl-tRNA s 60.0 25 0.00053 38.8 7.0 75 84-160 247-334 (699)
141 PTZ00399 cysteinyl-tRNA-synthe 59.5 5 0.00011 44.0 1.7 27 261-291 302-328 (651)
142 KOG1148 Glutaminyl-tRNA synthe 58.4 36 0.00079 36.8 7.6 105 78-197 240-356 (764)
143 PRK00390 leuS leucyl-tRNA synt 57.0 5.7 0.00012 44.7 1.6 49 234-291 526-583 (805)
144 PLN02946 cysteine-tRNA ligase 52.9 5.3 0.00012 42.9 0.5 26 262-291 311-336 (557)
145 PRK14536 cysS cysteinyl-tRNA s 51.8 9.6 0.00021 40.4 2.2 25 263-291 268-292 (490)
146 PLN02563 aminoacyl-tRNA ligase 50.8 36 0.00077 39.3 6.7 76 83-158 109-196 (963)
147 PRK14535 cysS cysteinyl-tRNA s 50.5 6.4 0.00014 43.2 0.7 26 262-291 496-521 (699)
148 KOG2007 Cysteinyl-tRNA synthet 49.4 33 0.00072 36.4 5.6 74 82-156 52-143 (586)
149 cd02168 NMNAT_Nudix Nicotinami 46.7 71 0.0015 29.1 6.9 69 88-166 3-73 (181)
150 KOG0433 Isoleucyl-tRNA synthet 46.6 18 0.00038 40.1 3.2 59 234-299 569-630 (937)
151 PRK13208 valS valyl-tRNA synth 46.0 25 0.00054 39.6 4.4 60 60-128 22-85 (800)
152 PRK14534 cysS cysteinyl-tRNA s 44.8 14 0.0003 39.2 2.1 25 263-291 268-292 (481)
153 COG0414 PanC Panthothenate syn 43.8 2E+02 0.0044 28.3 9.6 49 235-291 147-195 (285)
154 PF00133 tRNA-synt_1: tRNA syn 42.2 64 0.0014 35.1 6.8 44 81-125 20-67 (601)
155 TIGR00422 valS valyl-tRNA synt 42.1 46 0.001 37.8 5.8 62 59-129 16-81 (861)
156 PF00749 tRNA-synt_1c: tRNA sy 39.6 22 0.00048 35.4 2.5 69 93-171 9-78 (314)
157 PLN02943 aminoacyl-tRNA ligase 37.9 42 0.0009 38.7 4.7 62 59-129 71-136 (958)
158 PLN02381 valyl-tRNA synthetase 35.5 50 0.0011 38.6 4.8 62 59-129 111-176 (1066)
159 TIGR00456 argS arginyl-tRNA sy 34.0 41 0.0009 36.2 3.7 41 87-129 116-162 (566)
160 PRK05729 valS valyl-tRNA synth 32.8 86 0.0019 35.7 6.2 61 59-129 20-84 (874)
161 COG0525 ValS Valyl-tRNA synthe 30.4 36 0.00078 38.6 2.5 63 59-130 16-82 (877)
162 KOG1149 Glutamyl-tRNA syntheta 29.8 84 0.0018 32.9 4.8 40 87-128 35-75 (524)
163 PF00750 tRNA-synt_1d: tRNA sy 29.0 60 0.0013 32.8 3.7 40 89-129 26-70 (354)
164 cd02166 NMNAT_Archaea Nicotina 29.0 4.1E+02 0.0089 23.5 9.0 72 88-169 3-76 (163)
165 TIGR00125 cyt_tran_rel cytidyl 28.5 87 0.0019 22.7 3.7 29 95-127 7-35 (66)
166 PRK07217 replication factor A; 28.0 1.6E+02 0.0035 29.4 6.4 51 339-390 6-59 (311)
167 PRK14900 valS valyl-tRNA synth 26.9 52 0.0011 38.4 3.1 63 59-129 30-96 (1052)
168 PLN02843 isoleucyl-tRNA synthe 25.3 1.5E+02 0.0033 34.3 6.5 56 60-123 15-74 (974)
169 COG0018 ArgS Arginyl-tRNA synt 25.2 77 0.0017 34.4 3.8 40 89-130 123-168 (577)
170 PRK13793 nicotinamide-nucleoti 25.0 4E+02 0.0086 24.8 8.0 58 85-149 5-64 (196)
171 PRK00777 phosphopantetheine ad 24.7 2.6E+02 0.0056 24.7 6.6 46 234-281 91-136 (153)
172 PRK04147 N-acetylneuraminate l 24.0 6.7E+02 0.014 24.3 10.8 89 83-188 71-160 (293)
173 PTZ00419 valyl-tRNA synthetase 23.7 72 0.0016 36.9 3.5 66 59-129 39-108 (995)
174 COG5309 Exo-beta-1,3-glucanase 23.4 6E+02 0.013 25.1 9.0 115 38-160 57-173 (305)
175 TIGR03569 NeuB_NnaB N-acetylne 23.3 4.5E+02 0.0098 26.4 8.7 69 46-123 125-199 (329)
176 PRK05743 ileS isoleucyl-tRNA s 21.9 1.7E+02 0.0037 33.6 6.0 45 83-128 48-96 (912)
177 cd02173 ECT CTP:phosphoethanol 21.3 1.3E+02 0.0027 26.7 3.9 38 85-129 3-40 (152)
178 cd00560 PanC Pantoate-beta-ala 21.2 2.3E+02 0.005 27.8 6.0 54 242-302 152-205 (277)
179 PRK12451 arginyl-tRNA syntheta 20.3 1.1E+02 0.0023 33.2 3.7 39 89-129 119-163 (562)
No 1
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-121 Score=856.06 Aligned_cols=390 Identities=65% Similarity=1.141 Sum_probs=382.8
Q ss_pred hhhhhccCcccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCC
Q 015880 7 KQREEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGE 84 (399)
Q Consensus 7 ~~~~~~~~~~v~pw~~~~--~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~ 84 (399)
...+|.+||+||||+|++ ..+|||||||.+|||++|++++++|++++||+++|+|+|||+||+|||++.||+++++|+
T Consensus 5 ~~~~~~~Eq~vtPW~V~~~~~~~IDYdklI~~FG~~k~deeli~R~ek~tg~~~h~flRrg~fFshRDf~~iLd~~eq~k 84 (397)
T KOG2145|consen 5 EGATEVEEQRVTPWDVETSSADGIDYDKLIVQFGCSKIDEELIDRFEKLTGKPPHHFLRRGIFFSHRDFNLILDAYEQGK 84 (397)
T ss_pred ccccchhhcccCcceeecccCCCccHHHHHHHhCcccCCHHHHHHHHHhcCCCchHHhhhcceeecccHHHHHHHHHcCC
Confidence 345788999999999987 668999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015880 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (399)
Q Consensus 85 ~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (399)
|||+|||++||+++|||||++|+++++|||++|++|++|+++|+++++|+.++.|+..+++++|+++|+|+||||++|+|
T Consensus 85 pFyLYTGRGpSS~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTfI 164 (397)
T KOG2145|consen 85 PFYLYTGRGPSSESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFI 164 (397)
T ss_pred ceEEEeCCCCCccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccCc-cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchh
Q 015880 165 FSDFDYVG-GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 243 (399)
Q Consensus 165 ~~~s~~~~-~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~ 243 (399)
|+|.++++ +.+|.++++++|++|+|+++++|||+++.++|++.||..|||+||++|||.|+....|++|+|||++||||
T Consensus 165 Fsn~~y~g~~~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDP 244 (397)
T KOG2145|consen 165 FSNLDYMGGPAFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDP 244 (397)
T ss_pred EechhhccCcHHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeeccCCh
Confidence 99999997 49999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCc
Q 015880 244 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLE 323 (399)
Q Consensus 244 ~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~ 323 (399)
|+|||||+|+|+|++||+.+|+.++|.|+|++.|||.|+|||+|||+|++++|++||++|||+||+.|+|+||++||||+
T Consensus 245 yFRmtRDvA~rlg~~Kpali~stffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~d 324 (397)
T KOG2145|consen 245 YFRMTRDVAPRLGYPKPALIHSTFFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPD 324 (397)
T ss_pred HHHhhhhhhhhhCCCCcceeehhhchhhhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhCCCCC
Q 015880 324 VDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 396 (399)
Q Consensus 324 ~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~~l~~~~~~~~~~~ 396 (399)
|||.|+||+||++||+++|+++.+|.+|+|.+||+|+.|++.|++++..+|++|++++|+.|+.||..|+|+|
T Consensus 325 VDV~~~YLsFFldDD~kLeq~r~~Y~~G~mltgEmKk~~ievLq~~V~~hQa~Rk~Vtde~ld~Fm~~r~l~~ 397 (397)
T KOG2145|consen 325 VDVSFQYLSFFLDDDDKLEQIRKDYTSGEMLTGEMKKLCIEVLQEFVSRHQAARKEVTDETLDAFMDPRKLSF 397 (397)
T ss_pred ceehHHHHHHHhccHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.8e-107 Score=817.17 Aligned_cols=381 Identities=87% Similarity=1.390 Sum_probs=366.9
Q ss_pred cccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceeEEEec
Q 015880 15 QVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (399)
Q Consensus 15 ~~v~pw~~~~--~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~ 92 (399)
|.||||+|++ .+.|||+||+++|||++||+++++|++++||+++|+|+|||+||+|||++.+|+++++|+++++|||+
T Consensus 1 ~~v~pw~v~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~h~~lrRgi~~~hrd~~~~l~~~e~~~~~~vYtG~ 80 (383)
T PLN02486 1 QVVTPWEVSAKDGGKIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRDLEEILDAYEKGEKFYLYTGR 80 (383)
T ss_pred CccCCccccCCCCCCcCHHHHHHHhCCCcCCHHHHHHHHHhcCCCCCcccccceeeeccCHHHHHHHHhcCCCeEEEeCC
Confidence 4699999994 24799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCc
Q 015880 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~ 172 (399)
+|||++|||||++|+++++|||+++|++++|+|||+++++++.+++|++++++++|+++|+|+||||++++||+|++|.+
T Consensus 81 ~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~ 160 (383)
T PLN02486 81 GPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVG 160 (383)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHh
Confidence 99998899999999999999999999999999999999998889999999999999999999999999999999999986
Q ss_pred cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHH
Q 015880 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252 (399)
Q Consensus 173 ~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla 252 (399)
..||.++++++|++|++++++++||.++.++|+++||+|||||+|+.+||.++....+++|+||||+||+||++||||+|
T Consensus 161 ~~~~~~~~~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia 240 (383)
T PLN02486 161 GAFYKNMVKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVA 240 (383)
T ss_pred HhHHHHHHHHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHH
Confidence 67999999999999999999999998899999999999999999999998887766678999999999999999999999
Q ss_pred HHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHH
Q 015880 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS 332 (399)
Q Consensus 253 ~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~ 332 (399)
+|+|+.+|+.++++++|+|+|+++|||||.|||+|||+|+|++|++||++|||||++.|+++|++.||||++|++|+||+
T Consensus 241 ~r~~~~kp~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~ 320 (383)
T PLN02486 241 PRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLN 320 (383)
T ss_pred HHhCCCCcceeccccccCCCCCCCcCcCcCCCCeeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHH
Confidence 99999999999999999999987899999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhCCCC
Q 015880 333 FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP 395 (399)
Q Consensus 333 ~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~~l~~~~~~~~~~ 395 (399)
+|+++++++++|+++|++|+++|++||+.||+.|+++|+++|++|++++++.|++||.+|+++
T Consensus 321 ~f~~dd~~~eei~~~y~~G~l~~ge~K~~lae~i~~~l~~~qerr~~~~~~~~~~~~~~~~~~ 383 (383)
T PLN02486 321 FFLEDDAELERIKKEYGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVTDEMVDAFMAVRPLP 383 (383)
T ss_pred HHcCCchHHHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 998778999999999999999999999999999999999999999999999999999999974
No 3
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.9e-93 Score=714.43 Aligned_cols=361 Identities=39% Similarity=0.676 Sum_probs=339.6
Q ss_pred cCcccccCCccCCCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceeEEEec
Q 015880 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (399)
Q Consensus 13 ~~~~v~pw~~~~~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~ 92 (399)
.++.||||+|++ .+||+||+++||++|||+++++ |++ +|+|+|||+||+|||++.+++++++|+++++|||+
T Consensus 2 ~~~~v~pw~~~~--~~dy~kl~~~fg~~~~~~~~~~-~~~-----~h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG~ 73 (368)
T PRK12285 2 DEFMVTPWEVSG--IVDYDKLFEEFGIEPFTEVLPE-LPE-----PHPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTGF 73 (368)
T ss_pred CCceeCCCcCcC--cccHHHHHHHhCCCcCChHHHh-ccc-----cchHHhcCeeeecCCHHHHHHHHhcCCCeEEEEcc
Confidence 578999999998 8999999999999999999998 998 59999999999999999999999999999999999
Q ss_pred CCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCc
Q 015880 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~ 172 (399)
+||| +|||||++++++++|||+ +|++++|+|||+||++++..+++++++++++++++|+||||||++++||.||+|.
T Consensus 74 ~PSG-~lHLGh~~~~~~~~~lQ~-~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~- 150 (368)
T PRK12285 74 MPSG-PMHIGHKMVFDELKWHQE-FGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSENI- 150 (368)
T ss_pred CCCC-CccHHHHHHHHHHHHHHh-cCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCchH-
Confidence 9998 899999999999999999 5899999999999999888999999999999999999999999999999999996
Q ss_pred cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHH
Q 015880 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252 (399)
Q Consensus 173 ~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla 252 (399)
.+|..++.+++++|++++++.+||++++|+|+++||+|||||+|+++. .. ...+|+||||.||+||+++|||+|
T Consensus 151 -~~~~l~~~l~~~~t~~~l~r~~~f~~~~~~g~~~YP~lQaADil~~~~---~~--~~~~~lvPvG~DQ~~h~~ltRdiA 224 (368)
T PRK12285 151 -KVYDLAFELAKKVNFSELKAIYGFTGETNIGHIFYPATQAADILHPQL---EE--GPKPTLVPVGIDQDPHIRLTRDIA 224 (368)
T ss_pred -HHHHHHHHHHhhCcHHHHHHhhCCCCCCchhhhhhhHHHHHHHHhhcc---cc--cCCceEEEeccchHHHHHHHHHHH
Confidence 378888899999999999999999999999999999999997764322 22 124599999999999999999999
Q ss_pred HHh----CCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHH
Q 015880 253 PRI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV 328 (399)
Q Consensus 253 ~r~----~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~ 328 (399)
+|+ |+++|+.++++++|||+| +|||||+|+|+|||+|+|++|++||++ ||||++.|+++|++.||||++|++|
T Consensus 225 ~r~n~~~gf~~P~~l~~~~lpgL~G--~KMSkS~~~s~I~L~D~p~~I~kKI~k-A~Td~~~t~~~~~~~~g~p~~~~v~ 301 (368)
T PRK12285 225 ERLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKIMK-ALTGGRATLEEQRKLGGEPDECVVY 301 (368)
T ss_pred HHHhhhcCCCCchhHhhhcccCCCC--CcCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCCcccccccccCCCCCcchHH
Confidence 999 889999999999999998 799999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHhcc-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhCCC
Q 015880 329 KYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 394 (399)
Q Consensus 329 ~~l~~f~-~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~~l~~~~~~~~~ 394 (399)
+|+++|+ .+++++++|+++|++|+++|++||+.||+.|+++|+++|++|+++++ .|++|+...++
T Consensus 302 ~~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~~~-~~~~~~~~~~~ 367 (368)
T PRK12285 302 ELLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEARE-ILEKYLYDGKL 367 (368)
T ss_pred HHHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccC
Confidence 9999997 57889999999999999999999999999999999999999999999 99999877654
No 4
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-68 Score=516.43 Aligned_cols=290 Identities=29% Similarity=0.416 Sum_probs=259.1
Q ss_pred CCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCCCH-HHHHHHHHHHHHHHHHcCCCCCc
Q 015880 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSV-EESQRLARENAKDIIACGFDVTK 161 (399)
Q Consensus 83 ~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~-e~i~~~~~~~~~~ilA~G~dp~k 161 (399)
+.+++|+||++||| .||||||++++...|.|+..+..+++.|||+||++.+..++ +.+++++++++++|+||||||+|
T Consensus 3 ~~~~~vlSG~~PSG-~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k 81 (314)
T COG0180 3 MKKFRVLSGIQPSG-KLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEK 81 (314)
T ss_pred CCCceEEecCCCCC-CcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccc
Confidence 46789999999999 69999999998887866554467788889999999886444 88999999999999999999999
Q ss_pred eEEEeccccCccchHHHHHHHHhhcCHHHHHHhhCCCCC-------ccccccchhhhhcCCCCCCCcCcccccCCCccee
Q 015880 162 TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGE-------DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL 234 (399)
Q Consensus 162 t~i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~~~~-------~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~ 234 (399)
++||.||++++ .+...+.++..++++++.+..+|++. +++|.|+||+|||| |||.+++ |+
T Consensus 82 ~~if~QS~v~e--~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~~~~~~Gl~~YPvlqAA--------DILl~~a---~~ 148 (314)
T COG0180 82 STIFLQSEVPE--HAELAWLLSCVTNFGELERMTQFKDKSAKKGESIPIGLLTYPVLQAA--------DILLYQA---TL 148 (314)
T ss_pred cEEEEccCchH--HHHHHHHHHccCcHHHHHhhcCcchhhhcccccccccchhccHHHHH--------HhhhccC---Ce
Confidence 99999999875 55666778888888888888888654 45999999999999 6888887 79
Q ss_pred eccccCchhHHHHHHHHHHHhC------CCCcceeecc--cccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccC
Q 015880 235 IPCAIDQDPYFRMTRDVAPRIG------YHKPALIESS--FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFS 306 (399)
Q Consensus 235 v~~G~DQd~~~~l~rdla~r~~------~~kp~~l~~~--~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t 306 (399)
||||.||+||+|||||||+||| +++|..+++. ++|||+|+ +|||||+|||+|+|+|+|++|++||++ |.|
T Consensus 149 VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~-~KMSkS~~ns~I~L~D~~~~i~kKI~~-~~t 226 (314)
T COG0180 149 VPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKIKK-AAT 226 (314)
T ss_pred eccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCC-CcccccCCCCeeeccCCHHHHHHHHHH-hcc
Confidence 9999999999999999999999 7899999988 99999998 999999999999999999999999999 777
Q ss_pred CCchhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHH--H
Q 015880 307 GGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--M 384 (399)
Q Consensus 307 ~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~--~ 384 (399)
++ .+.+++++ ||+|++|++|+|+.+|+. +++.+++++.|++|+++||+||+.||+.|+++|+++|+||++++++ +
T Consensus 227 d~-~~~~~~~~-~g~Pe~~~l~~~~~~~~~-~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~~ 303 (314)
T COG0180 227 DG-PTLIEYRK-GGKPEVCNLFEIYSAFFE-DDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPAY 303 (314)
T ss_pred CC-CCccccCC-CCCCCcchHHHHHHHhcC-CCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 77 77888888 999999999999999975 6666799999999999999999999999999999999999999875 5
Q ss_pred HHHHHhh
Q 015880 385 VDAFMAV 391 (399)
Q Consensus 385 l~~~~~~ 391 (399)
+..++..
T Consensus 304 l~~il~~ 310 (314)
T COG0180 304 LDDILRK 310 (314)
T ss_pred HHHHHhc
Confidence 7776654
No 5
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=6.2e-64 Score=496.33 Aligned_cols=293 Identities=38% Similarity=0.571 Sum_probs=263.9
Q ss_pred CceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCC-CHHHHHHHHHHHHHHHHHcCCCCCce
Q 015880 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL-SVEESQRLARENAKDIIACGFDVTKT 162 (399)
Q Consensus 84 ~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~-~~e~i~~~~~~~~~~ilA~G~dp~kt 162 (399)
+|+++|+|++||| .|||||++++++..++|+ .|+.++|+|||+||++.++. +.+.++.++++++++|+|||+||+++
T Consensus 1 ~~~~v~~G~~PTG-~~HlG~~l~~~~~~~~~q-~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~ 78 (328)
T TIGR00233 1 KKFRVLTGIQPSG-KMHLGHYLGAIQTKWLQQ-FGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKT 78 (328)
T ss_pred CCCEEEEeeCCCc-HhHHHHHHHHHHHHHHHh-CCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhhe
Confidence 4789999999999 899999999998888886 48999999999999997654 67889989999999999999999999
Q ss_pred EEEeccccCccchHHHHHHHHhhcCHHHHHHhhCCCCC-----ccccccchhhhhcCCCCCCCcCcccccCCCcceeecc
Q 015880 163 FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGE-----DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (399)
Q Consensus 163 ~i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~~~~-----~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~ 237 (399)
+||.||+|. .++..++.+++++|++++.+..++.+. .++|.|+||+|||| ||+.++++ +|||
T Consensus 79 ~if~qS~~~--e~~el~~~l~~~~t~~~l~r~~~~k~k~~~~~~~~g~l~YP~lqaa--------Dil~~~~d---~vpv 145 (328)
T TIGR00233 79 FIFLQSDYP--EHYELAWLLSCQVTFGELKRMTQFKDKSQAENVPIGLFSYPVLQAA--------DILLYQAD---LVPV 145 (328)
T ss_pred EEEEcCCcH--HHHHHHHHHHccCCHHHHHhccCcchhccCCCCCchhhcchHHHHh--------hhhhcCCC---eeec
Confidence 999999997 478888889999999999888776543 59999999999999 67888875 8999
Q ss_pred ccCchhHHHHHHHHHHHhC------CCCcceeecccccCCCCC-CCCCCCCCCCCceeecCcHHHHHHHhcccccCCCc-
Q 015880 238 AIDQDPYFRMTRDVAPRIG------YHKPALIESSFFPALQGE-TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ- 309 (399)
Q Consensus 238 G~DQd~~~~l~rdla~r~~------~~kp~~l~~~~lp~L~g~-g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~- 309 (399)
|.||+||++||||+|+|+| +++|..++++++|.|.|. |+|||||+|||+|||+|+|++|++||++ |+|++.
T Consensus 146 G~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D~~e~I~~KI~~-a~td~~~ 224 (328)
T TIGR00233 146 GIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTDTPKQIKKKIRK-AATDGGR 224 (328)
T ss_pred ccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecCCHHHHHHHHHh-cCCCCCC
Confidence 9999999999999999999 789998887776665554 2699999999999999999999999999 888765
Q ss_pred hhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 015880 310 ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM 389 (399)
Q Consensus 310 ~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~~l~~~~ 389 (399)
.+.+++++.+|+|+++++|+++.+|..++++++++.++|.+|+++|++||+.||+.|+++|+|+|++|+++++++|++++
T Consensus 225 ~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~~~~~~l 304 (328)
T TIGR00233 225 VTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEEILDKIL 304 (328)
T ss_pred CcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888999999999999999998777899999999999999999999999999999999999999999998999998
Q ss_pred hhC
Q 015880 390 AVR 392 (399)
Q Consensus 390 ~~~ 392 (399)
..+
T Consensus 305 ~~g 307 (328)
T TIGR00233 305 EPG 307 (328)
T ss_pred HHH
Confidence 763
No 6
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=9.9e-64 Score=495.72 Aligned_cols=297 Identities=25% Similarity=0.360 Sum_probs=265.1
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCCCH
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSV 138 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~ 138 (399)
-.+++||.....++ ++|.+.+++++++++|+||+||| .|||||+++++.++|||++ |+.++|+|||+||++.++.++
T Consensus 5 ~~~~~~~~~e~~~~-~el~~~l~~~~~~~v~~G~~PTG-~lHLG~~~~~~~~~~lq~~-g~~~~i~IaD~ha~~~~~~~~ 81 (329)
T PRK08560 5 LELITRNTEEVVTE-EELRELLESKEEPKAYIGFEPSG-KIHLGHLLTMNKLADLQKA-GFKVTVLLADWHAYLNDKGDL 81 (329)
T ss_pred HHHHHhCceeecCH-HHHHHHHhCCCCCEEEEccCCCC-cchhhhhHHHHHHHHHHHC-CCeEEEEEccchhhcCCCCCH
Confidence 35677887655543 66777778789999999999999 6999999999999999995 889999999999999877899
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEeccccCcc-chHHHHHHHHhhcCHHHHHHh---hCCC-CCccccccchhhhhc
Q 015880 139 EESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGI---FGFT-GEDHIGKVSFPPVQA 213 (399)
Q Consensus 139 e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~-~~~~~~~~l~~~~t~~~~~~~---~g~~-~~~~~g~~~YPllQa 213 (399)
+++++++++++++|+|||+||+++.||.||+|..+ .||..++++++++|++++.+. +++. ++.++|+|+||+|||
T Consensus 82 ~~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~~~~~~~~g~l~YP~lqa 161 (329)
T PRK08560 82 EEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGRRMEEPDVSKLVYPLMQV 161 (329)
T ss_pred HHHHHHHHHHHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999865 588899999999999999874 4443 356999999999999
Q ss_pred CCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcH
Q 015880 214 VPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 293 (399)
Q Consensus 214 ad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~ 293 (399)
| ||+.++++ +||||.||+||++++||+|+|+|+.+|..+++++||+|+|+++|||||+|+|+|||+|+|
T Consensus 162 a--------Dil~~~ad---~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~~ 230 (329)
T PRK08560 162 A--------DIFYLDVD---IAVGGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSP 230 (329)
T ss_pred H--------HHHHhCCC---EEEechhHHHHHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCCCCCeecccCCH
Confidence 9 68888875 899999999999999999999999999999999999999976799999988899999999
Q ss_pred HHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhccCCh------------------HHHHHHHHHHhcCCCCh
Q 015880 294 KAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDD------------------AELEHIKKEYGAGGMLT 355 (399)
Q Consensus 294 ~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~------------------~eleei~~~~~~G~~~~ 355 (399)
++|++||++ |||++. +|+.|++++|+++|..++ +++++++++|++|+++|
T Consensus 231 ~~I~~KI~k-A~t~~~-----------~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~~ 298 (329)
T PRK08560 231 EEIRRKIKK-AYCPPG-----------EVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELERDYAEGKLHP 298 (329)
T ss_pred HHHHHHHHh-ccCCCC-----------CcCCCcHHHHHHHHhhccccceEEechhhcCCCCCcCCHHHHHHHHHcCCCCH
Confidence 999999999 999863 466777899999875332 67999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhh
Q 015880 356 GEVKQRLAKVLTELVERHQVARAAVT 381 (399)
Q Consensus 356 ~~~K~~la~~i~~~l~~~r~~~~~~~ 381 (399)
++||+.||+.|+++|.|+|+++++-.
T Consensus 299 ~~lK~~la~~i~~~l~pir~~~~~~~ 324 (329)
T PRK08560 299 MDLKNAVAEYLIEILEPVREYLEEGP 324 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 99999999999999999999998643
No 7
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8e-63 Score=489.78 Aligned_cols=285 Identities=26% Similarity=0.358 Sum_probs=250.3
Q ss_pred eEEEecCCCCCCccccchHHHHhHHh--HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015880 87 YLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (399)
Q Consensus 87 ~iytG~~PTg~slHlGhlv~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (399)
++|+|++||| .|||||++|++ .+| ||++ +.++++|||+||++++ .+.+++++++++++++|+|||+||+|+.|
T Consensus 3 ~v~~G~~PTG-~lHLG~~~g~~-~~~~~lQ~~--~~~~~~IaD~ha~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k~~i 77 (333)
T PRK00927 3 RVLSGIQPTG-KLHLGNYLGAI-KNWVELQDE--YECFFCIADLHALTVP-QDPEELRENTRELAADYLACGIDPEKSTI 77 (333)
T ss_pred EEEEeeCCCc-cchHHhHHHHH-HHHHHHHhc--CCeEEEEecHHHHhCC-CCHHHHHHHHHHHHHHHHeEccChhheEE
Confidence 6999999999 69999999885 666 9986 4566778999999965 58999999999999999999999999999
Q ss_pred EeccccCccc--hHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeecc
Q 015880 165 FSDFDYVGGA--FYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (399)
Q Consensus 165 ~~~s~~~~~~--~~~-----~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~ 237 (399)
|.||+|.++. +|. .+.++.|+.++++...+ +.+++++|+|+||+|||| ||+.+++ |+|||
T Consensus 78 f~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~--~~~~~~~g~~~YP~lQaa--------Dil~~~~---divpv 144 (333)
T PRK00927 78 FVQSHVPEHAELAWILNCITPLGELERMTQFKDKSAK--QKENVSAGLFTYPVLMAA--------DILLYKA---DLVPV 144 (333)
T ss_pred EEeCCCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhc--cCCCCCcHhhhcHHHHHH--------HHHhcCC---CEEee
Confidence 9999998652 232 35566777776655432 246889999999999999 6777876 69999
Q ss_pred ccCchhHHHHHHHHHHHhCC------CCcceee---cccccCCCCCCCCCCCCCCC--CceeecCcHHHHHHHhcccccC
Q 015880 238 AIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFS 306 (399)
Q Consensus 238 G~DQd~~~~l~rdla~r~~~------~kp~~l~---~~~lp~L~g~g~KMSKS~~n--saI~L~D~~~~i~~KI~kyA~t 306 (399)
|.||+||+++|||+|+|+|. ++|..++ +++||||+|+++|||||+|+ |+|||+|+|++|++||++ |+|
T Consensus 145 G~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~-a~t 223 (333)
T PRK00927 145 GEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKK-AVT 223 (333)
T ss_pred ccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHh-CCC
Confidence 99999999999999999984 5787666 37899999977799999996 799999999999999999 999
Q ss_pred CCchhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHH--H
Q 015880 307 GGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--M 384 (399)
Q Consensus 307 ~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~--~ 384 (399)
++..+.+++++.|++|++|++++|+++|+ ++++++++++|.+|+++|++||+.||+.|+++|.|+|++|++++++ +
T Consensus 224 d~~~~~~~~~~~~~~p~~~~l~~~~~~~~--~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~ 301 (333)
T PRK00927 224 DSERLREIRYDLPNKPEVSNLLTIYSALS--GESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAY 301 (333)
T ss_pred CCCcccccccCCCCCCccccHHHHHHHhC--CCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99888888999999999999999999994 6789999999999999999999999999999999999999999864 8
Q ss_pred HHHHHhhC
Q 015880 385 VDAFMAVR 392 (399)
Q Consensus 385 l~~~~~~~ 392 (399)
|++++..+
T Consensus 302 ~~~il~~G 309 (333)
T PRK00927 302 LDEILAEG 309 (333)
T ss_pred HHHHHHHH
Confidence 99988653
No 8
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=3.9e-62 Score=483.90 Aligned_cols=287 Identities=28% Similarity=0.388 Sum_probs=248.2
Q ss_pred eeEEEecCCCCCCccccchHHHHhHH-hHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015880 86 FYLYTGRGPSSEALHLGHLVPFMFTK-YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (399)
Q Consensus 86 ~~iytG~~PTg~slHlGhlv~~~~~~-~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (399)
.++|+|++||| .|||||++++++.. +||++++ ++|+|||+|+++++..+++++++++++++++|+|||+||+|++|
T Consensus 3 ~~v~sG~~PTG-~~HLGn~l~~~~~~~~lQ~~~~--~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i 79 (333)
T PRK12282 3 PIILTGDRPTG-KLHLGHYVGSLKNRVALQNEHE--QFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTI 79 (333)
T ss_pred CEEEEeeCCCC-cchHHHHHHHHHHHHHHHhCCC--EEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEE
Confidence 37999999998 69999999977554 7999865 57778999999976789999999999999999999999999999
Q ss_pred EeccccCcc----chHHH---HHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeecc
Q 015880 165 FSDFDYVGG----AFYKN---MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (399)
Q Consensus 165 ~~~s~~~~~----~~~~~---~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~ 237 (399)
|.||+|.++ ++|.. +.++.|+.++++....+++.+++++|.++||+|||| ||+.+++ |+|||
T Consensus 80 ~~qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaa--------DIl~~~~---d~vpv 148 (333)
T PRK12282 80 FIQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAA--------DITAFKA---TLVPV 148 (333)
T ss_pred EECCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHH--------HHHhhCC---CEEEe
Confidence 999999764 33443 345666666666656666678899999999999999 6788887 69999
Q ss_pred ccCchhHHHHHHHHHHHhCC--CCccee-------ecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCC
Q 015880 238 AIDQDPYFRMTRDVAPRIGY--HKPALI-------ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 308 (399)
Q Consensus 238 G~DQd~~~~l~rdla~r~~~--~kp~~l-------~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~ 308 (399)
|.||+||++++||+|+|+|. .+|..+ .+++||||+| ++|||||++| +|||+|+|++|++||++ |||++
T Consensus 149 G~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g-~~KMSKS~~~-~I~L~D~pe~I~kKI~~-A~td~ 225 (333)
T PRK12282 149 GDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDG-KAKMSKSLGN-AIYLSDDADTIKKKVMS-MYTDP 225 (333)
T ss_pred ccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCC-CCcCCCCCCC-eeeeeCCHHHHHHHHHh-CcCCC
Confidence 99999999999999999993 334322 3679999998 4899999976 99999999999999999 99987
Q ss_pred chhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHH--HHH
Q 015880 309 QESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVD 386 (399)
Q Consensus 309 ~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~--~l~ 386 (399)
. ..+++.+++|++|++++|+++|..+++++++++++|++|++++++||+.||+.|+++|.|+|++|++++++ +|+
T Consensus 226 ~---~~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~ 302 (333)
T PRK12282 226 N---HIRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVL 302 (333)
T ss_pred C---CccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3 24577899999999999999997668999999999999999999999999999999999999999998853 799
Q ss_pred HHHhhC
Q 015880 387 AFMAVR 392 (399)
Q Consensus 387 ~~~~~~ 392 (399)
+++..+
T Consensus 303 ~vl~~G 308 (333)
T PRK12282 303 EILKAG 308 (333)
T ss_pred HHHHHH
Confidence 888653
No 9
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=2.6e-61 Score=468.57 Aligned_cols=264 Identities=41% Similarity=0.632 Sum_probs=242.4
Q ss_pred eEEEecCCCCCCccccchHH-HHhHHhHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 015880 87 YLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (399)
Q Consensus 87 ~iytG~~PTg~slHlGhlv~-~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~ 165 (399)
++|+|++||| +|||||+++ ++...+||++ |+.++|+|||+||++.+..+++++++++++++++++|+|+||++++||
T Consensus 1 ~i~tG~~PTG-~lHLG~~~~al~~~~~lQ~a-g~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~ 78 (280)
T cd00806 1 RVLSGIQPSG-SLHLGHYLGAFRFWVWLQEA-GYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIF 78 (280)
T ss_pred CEEEeeCCCc-hhhHHHHHHHHHHHHHHHhC-CCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEE
Confidence 4899999999 999999999 7788889997 889999999999999766799999999999999999999999999999
Q ss_pred eccccCccchHHHHHHHHhhcCHHHHHHhhCCCC------CccccccchhhhhcCCCCCCCcCcccccCCCcceeecccc
Q 015880 166 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTG------EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239 (399)
Q Consensus 166 ~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~~~------~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~ 239 (399)
.||+|. .++...+.+++.+|++++.+..+|++ +.++|+|+||+|||| ||+.+++ |+||+|.
T Consensus 79 ~qS~~~--~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~~~~~~~g~~~YP~lqaa--------Dil~~~~---~~vpvG~ 145 (280)
T cd00806 79 FQSDVP--EHYELAWLLSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAA--------DILLYKA---CLVPVGI 145 (280)
T ss_pred EcCCcH--HHHHHHHHHhCcCCHHHHHhccchhhhhccCCCCcchhhcchHHHHh--------hhhhccC---CEEeecc
Confidence 999996 46777788999999999998888765 889999999999999 6777776 7999999
Q ss_pred CchhHHHHHHHHHHHhC------CCCcceeec--ccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchh
Q 015880 240 DQDPYFRMTRDVAPRIG------YHKPALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQES 311 (399)
Q Consensus 240 DQd~~~~l~rdla~r~~------~~kp~~l~~--~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t 311 (399)
||+||++++||+|+|+| +++|..+++ ++||+|+|+++|||||+|+|+|||+|+|++|++||++ |+|++..+
T Consensus 146 DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~~~~i~~KI~~-a~td~~~~ 224 (280)
T cd00806 146 DQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMK-AATDGGRT 224 (280)
T ss_pred ccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCCHHHHHHHHHh-ccCCCCCc
Confidence 99999999999999999 789999988 9999999976899999997799999999999999999 99998764
Q ss_pred hHHHhhcCCCCcchHHHHHHHhcc-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 015880 312 VELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 369 (399)
Q Consensus 312 ~e~~~~~g~~p~~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~ 369 (399)
++++.+++|+++++++|+.+|+ .+.++++++ ++|++|++++++||+.||+.|+++
T Consensus 225 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 225 --EHRRDGGGPGVSNLVEIYSAFFNDDDEELEEI-DEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred --eecCCCCCCCcChHHHHHHHHhCCCHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHhC
Confidence 6789999999999999999875 567788888 999999999999999999999864
No 10
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-59 Score=465.28 Aligned_cols=283 Identities=18% Similarity=0.253 Sum_probs=243.9
Q ss_pred eeEEEecCCCCCCccccchHHHHh-HHhHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015880 86 FYLYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (399)
Q Consensus 86 ~~iytG~~PTg~slHlGhlv~~~~-~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (399)
.++|+|++||| .||||||++++. ..++|+.+++.++++|||+||++ ...+++++++++++++++|+|||+||+|++|
T Consensus 4 ~~v~sGiqPTG-~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt-~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~i 81 (332)
T PRK12556 4 KIMLTGIKPTG-YPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALN-AVHDPEQFRSYTREVAATWLSLGLDPEDVIF 81 (332)
T ss_pred CEEEEEECCCC-cchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhcc-CCCCHHHHHHHHHHHHHHHhheeecccceEE
Confidence 47999999998 899999999863 33588878888888899999986 3479999999999999999999999999999
Q ss_pred EeccccCccc---hHH----HHHHHHhhcCHHHHHHh-----hCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcc
Q 015880 165 FSDFDYVGGA---FYK----NMVKVAKCVTYNKVVGI-----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLR 232 (399)
Q Consensus 165 ~~~s~~~~~~---~~~----~~~~l~~~~t~~~~~~~-----~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~ 232 (399)
|.||++.++. |+. .+.++.|+.++++.... .|+.+++++|+++||+|||| ||+.+++
T Consensus 82 f~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAA--------DIl~~~~--- 150 (332)
T PRK12556 82 YRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAA--------DILLFQA--- 150 (332)
T ss_pred EECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhh--------hhhhccC---
Confidence 9999997642 212 24667888887765442 23456789999999999999 6788887
Q ss_pred eeeccccCchhHHHHHHHHHHHhC------CCCccee---ecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhccc
Q 015880 233 CLIPCAIDQDPYFRMTRDVAPRIG------YHKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKY 303 (399)
Q Consensus 233 ~~v~~G~DQd~~~~l~rdla~r~~------~~kp~~l---~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~ky 303 (399)
|+||||.||+||+++|||+|+||| +++|..+ +++++|||+| +|||||++| +|+|+|+|++|++||++
T Consensus 151 d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg--~KMSKS~~n-~I~L~D~p~~I~kKI~k- 226 (332)
T PRK12556 151 THVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDG--RKMSKSYGN-VIPLFAEQEKLRKLIFK- 226 (332)
T ss_pred CEEEeccccHHHHHHHHHHHHHHHHhccccCCCceeccccccccccCCCC--CCCCCCCCC-cccccCCHHHHHHHHHH-
Confidence 589999999999999999999999 5778766 6899999998 699999986 89999999999999999
Q ss_pred ccCCCchhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Q 015880 304 AFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE 383 (399)
Q Consensus 304 A~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~ 383 (399)
|+|++... +.+++|++|++++|+++|. +++++++++++|++ +++|++||+.||+.|+++|.|+|++++++..+
T Consensus 227 a~Td~~~~-----~~~~~p~~~~l~~i~~~~~-~~~~~eei~~~y~~-~~~~~~~K~~lae~i~~~l~pire~~~~~~~~ 299 (332)
T PRK12556 227 IKTDSSLP-----NEPKDPETSALFTIYKEFA-TEEEVQSMREKYET-GIGWGDVKKELFRVVDRELAGPREKYAMYMNE 299 (332)
T ss_pred hccCCCcc-----cCCCCcchhHHHHHHHHHC-CchhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99998541 3478999999999999996 34789999999987 48999999999999999999999999999853
Q ss_pred --HHHHHHhhC
Q 015880 384 --MVDAFMAVR 392 (399)
Q Consensus 384 --~l~~~~~~~ 392 (399)
+|++++..+
T Consensus 300 ~~~~~~il~~G 310 (332)
T PRK12556 300 PSLLDEALEKG 310 (332)
T ss_pred HHHHHHHHHHH
Confidence 799888653
No 11
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.9e-58 Score=459.90 Aligned_cols=295 Identities=19% Similarity=0.272 Sum_probs=249.7
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccch-HHHHhHHhHHhhCCCeEEEEecCcccccccC--C
Q 015880 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHL-VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (399)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhl-v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~--~ 136 (399)
.++.||..... ..++|.+++++++++++|+|++||| .|||||. +..+...+||++ |+.++++|||+||+++++ .
T Consensus 42 ~~i~r~~~e~i-~~eel~~~l~~~~~~~v~~G~~PTG-~lHLG~g~i~~~~~~~lq~~-G~~v~~~IaD~hA~~~~~~g~ 118 (383)
T PTZ00126 42 KLCLSIGEECI-QPEELRELLKLKERPICYDGFEPSG-RMHIAQGILKAINVNKLTKA-GCVFVFWVADWFALLNNKMGG 118 (383)
T ss_pred HHHhcCceeec-CHHHHHHHHhcCCCCEEEEEECCCC-cccccchHhHhHHHHHHHhC-CCeEEEEEccceeecCCCCCC
Confidence 46778865444 3566777778889999999999999 7999994 444455679986 788999999999999764 6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCc---cchHHHHHHHHhhcCHHHHHH---hhCCC--CCccccccch
Q 015880 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG---GAFYKNMVKVAKCVTYNKVVG---IFGFT--GEDHIGKVSF 208 (399)
Q Consensus 137 ~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~---~~~~~~~~~l~~~~t~~~~~~---~~g~~--~~~~~g~~~Y 208 (399)
++++++++++++++.|+|+|+||+++.||.||+|.. ..+|..++++++++|++++++ .+++. ++.++|+|+|
T Consensus 119 ~l~~i~~~~~~~~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~~~~~~~g~l~Y 198 (383)
T PTZ00126 119 DLEKIRKVGEYFIEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSEGDEQPCAQILY 198 (383)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhccccCCCCCchhhhh
Confidence 899999999999999999999999999999999763 257899999999999999874 34543 4578999999
Q ss_pred hhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCC-CCcceeecccccCCCCCCCCCCCCCCCCce
Q 015880 209 PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAI 287 (399)
Q Consensus 209 PllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~-~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI 287 (399)
|+|||| |++.+++| ++|+|.||+||++++||+|+++|+ ++|.++++++||||+++++|||||+||++|
T Consensus 199 P~LQaa--------Dil~l~ad---ivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I 267 (383)
T PTZ00126 199 PCMQCA--------DIFYLKAD---ICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAI 267 (383)
T ss_pred hHHHhh--------hhhccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCee
Confidence 999999 67888886 789999999999999999999995 678888999999997546899999999999
Q ss_pred eecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhcc---------C---------ChHHHHHHHHHHh
Q 015880 288 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL---------E---------DDAELEHIKKEYG 349 (399)
Q Consensus 288 ~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~---------~---------~~~eleei~~~~~ 349 (399)
||+|+|++|++||++ |||++... ++|| ++.|++++. . +.+++++++++|+
T Consensus 268 ~L~Dspe~I~kKI~k-A~t~p~~~-------~~np----v~~~~~~~~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y~ 335 (383)
T PTZ00126 268 FMEDSEEDVNRKIKK-AYCPPGVI-------EGNP----ILAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEELEKDYL 335 (383)
T ss_pred cCCCCHHHHHHHHHh-CcCCCCCC-------CCCc----chhhhhhcccccccceeEeccccccCccCcCCHHHHHHHHh
Confidence 999999999999999 99986431 2344 456666521 1 2258999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHhhHHHHHHHHh
Q 015880 350 AGGMLTGEVKQRLAKVLTELVERHQVARAAV 380 (399)
Q Consensus 350 ~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~ 380 (399)
+|.++|++||+.||+.|+++|.|+|+++++-
T Consensus 336 ~g~l~p~dlK~~lae~i~~~L~PIRe~~~~~ 366 (383)
T PTZ00126 336 SGALHPGDLKPALAKYLNLMLQPVRDHFQNN 366 (383)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999854
No 12
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-57 Score=462.18 Aligned_cols=290 Identities=22% Similarity=0.266 Sum_probs=252.7
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccc------
Q 015880 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW------ 133 (399)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~------ 133 (399)
.|.+||+|++|++++++.+.+++++|+++|+||+|||++|||||++|+++++|||++ |+.++++|||+|+.+.
T Consensus 8 ~l~~Rg~~~~~~~~~~l~~~~~~~~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~-G~~~~~ligd~ta~igDpsgk~ 86 (410)
T PRK13354 8 QLKWRGAINQETDEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDA-GHRPVILIGGFTGKIGDPSGKS 86 (410)
T ss_pred HHHHcCCchhcCCHHHHHHHHhcCCCcEEEEcccCCCCCcchhhHHHHHHHHHHHHc-CCeEEEEEcccccccCCCCccc
Confidence 466799999999999999888888999999999999989999999999999999997 4555666777776664
Q ss_pred --cC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCccchHHHHH-HHHhhcCHHHHHHh------hCCCCCccc
Q 015880 134 --KN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGI------FGFTGEDHI 203 (399)
Q Consensus 134 --~~-~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~-~l~~~~t~~~~~~~------~g~~~~~~~ 203 (399)
|+ ++.+++++|+..+.+++.+ |+||+++.|++||+|+++..|..++ ++++++|+++|.++ ++..+++++
T Consensus 87 ~~R~~l~~e~i~~n~~~i~~q~~~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~ 165 (410)
T PRK13354 87 KERKLLTDEQVQHNAKTYTEQIFK-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISF 165 (410)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHH-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCch
Confidence 32 7899999999877777766 8999999999999999888888999 59999999999764 322467899
Q ss_pred cccchhhhhcCCCCCCCcCcccccCCCcceee-ccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCC
Q 015880 204 GKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI-PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 282 (399)
Q Consensus 204 g~~~YPllQaad~~~~~~~di~~~~~~~~~~v-~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~ 282 (399)
|+|+||+|||| ||+.+..+++|.+ |+|.||++|++++||+|+|+|..+|..++.|+||+++| .|||||.
T Consensus 166 ~ef~YpllQa~--------D~~~l~~~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG--~KMsKS~ 235 (410)
T PRK13354 166 TEFFYPLLQAY--------DFVHLNRKEDVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADG--TKMGKSA 235 (410)
T ss_pred hhhccHHHHhh--------hHHHHhccCCCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCC--CccCCCC
Confidence 99999999999 6777755566766 79999999999999999999998898888899999987 5999998
Q ss_pred CCCceeecCc---HHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhcc-CChHHHHHHHHHHhcCCCChHHH
Q 015880 283 PNSAIYVTDS---AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEV 358 (399)
Q Consensus 283 ~nsaI~L~D~---~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~~~~ 358 (399)
+| +|||+|+ |+++++||++ .||.++ ++||++|+ .+++++++|+++|++|. +++++
T Consensus 236 ~n-aI~L~d~~tsp~~i~qki~~------------------~~D~~v-~~~l~~~t~l~~~ei~~l~~~~~~~~-~~~~~ 294 (410)
T PRK13354 236 GG-AIWLDPEKTSPYEFYQFWMN------------------IDDRDV-VKYLKLFTDLSPDEIDELEAQLETEP-NPRDA 294 (410)
T ss_pred CC-ceeccCCCCCHHHHHHHHHc------------------CChHHH-HHHHHHHhCCCHHHHHHHHHHHhcCC-ChHHH
Confidence 77 9999999 9999999998 245555 89999986 48899999999999984 69999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhH
Q 015880 359 KQRLAKVLTELVERHQVARAAVTD 382 (399)
Q Consensus 359 K~~la~~i~~~l~~~r~~~~~~~~ 382 (399)
|+.||++|++++|+.++..++...
T Consensus 295 Kk~LA~~v~~~vhg~~~~~~a~~~ 318 (410)
T PRK13354 295 KKVLAEEITKFVHGEEAAEEAEKI 318 (410)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHH
Confidence 999999999999999998877654
No 13
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-57 Score=455.64 Aligned_cols=284 Identities=20% Similarity=0.239 Sum_probs=243.1
Q ss_pred eEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 015880 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 166 (399)
Q Consensus 87 ~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~ 166 (399)
++|+|++||| .||||||++++ .+|.+-..+..++++|||+||++.+..+++++++++.+++++|+|||+||+|+.||.
T Consensus 4 ~v~sGiqPSG-~~HLGnylG~i-k~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~ 81 (398)
T PRK12283 4 RVLSGMRPTG-RLHLGHYHGVL-KNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFI 81 (398)
T ss_pred EEEEEeCCCC-cchHHHHHHHH-HHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 6999999998 89999999985 788543335667888999999997767999999999999999999999999999999
Q ss_pred ccccCcc--chHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeecccc
Q 015880 167 DFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239 (399)
Q Consensus 167 ~s~~~~~--~~~~-----~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~ 239 (399)
||+++++ .+|. .+.++.|++++++...+.+..++.++|.++||+|||| |||.+++ ++||||.
T Consensus 82 QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAA--------DILl~~a---~iVPVG~ 150 (398)
T PRK12283 82 QSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSA--------DILIYRA---GLVPVGE 150 (398)
T ss_pred CCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHH--------HHHhcCC---CEeeecc
Confidence 9999864 2222 3566777777776655433346789999999999999 7888887 4899999
Q ss_pred CchhHHHHHHHHHHHhCC--------------------------------------------------------------
Q 015880 240 DQDPYFRMTRDVAPRIGY-------------------------------------------------------------- 257 (399)
Q Consensus 240 DQd~~~~l~rdla~r~~~-------------------------------------------------------------- 257 (399)
||+||++||||+|+|||.
T Consensus 151 DQ~qHleLaRdIA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (398)
T PRK12283 151 DQVPHVEMTREIARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRE 230 (398)
T ss_pred ccHHHHHHHHHHHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhc
Confidence 999999999999999764
Q ss_pred --------------CCcce--eecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCC
Q 015880 258 --------------HKPAL--IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGAN 321 (399)
Q Consensus 258 --------------~kp~~--l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~ 321 (399)
+.|.. .++++||||+| +|||||.+| +|+|+|+|++|++||++ |+|++ .++++..||+
T Consensus 231 ~~~~~~~~~~~~~~~~P~~~~~~~~~I~gLdg--~KMSKS~~n-~I~L~Ds~~~I~kKI~~-a~TDs---~~~~~~~~g~ 303 (398)
T PRK12283 231 RLFGYLEGAGKIILPEPQALLTEASKMPGLDG--QKMSKSYGN-TIGLREDPESVTKKIRT-MPTDP---ARVRRTDPGD 303 (398)
T ss_pred cccccccccCCcccCCCcccccCCCcccCCCC--CcCCCCCCC-eeeCcCCHHHHHHHHHh-CCCCC---cccccCCCCC
Confidence 23333 23689999987 799999776 99999999999999999 99974 3568888999
Q ss_pred CcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHH--HHHHHHhh
Q 015880 322 LEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAV 391 (399)
Q Consensus 322 p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~--~l~~~~~~ 391 (399)
|++|++++++.+|+ ++++++++.++|++|+++|++||+.||+.|.++|.++|++++++.++ +|++++..
T Consensus 304 Pe~~nl~~i~~~~~-~~~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~ 374 (398)
T PRK12283 304 PEKCPVWQLHQVYS-DEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVAD 374 (398)
T ss_pred CCcCHHHHHHHHhC-CChHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999994 45579999999999999999999999999999999999999999764 78888765
No 14
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.6e-57 Score=455.04 Aligned_cols=282 Identities=21% Similarity=0.304 Sum_probs=243.1
Q ss_pred eeEEEecCCCCCCccccchHHHHhHHh--HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015880 86 FYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (399)
Q Consensus 86 ~~iytG~~PTg~slHlGhlv~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 163 (399)
.++|+||+||| .||||||++.+ .+| ||+ ++.++|+|||+||++. ..+++++++++++++++|+|||+||+|+.
T Consensus 47 ~~v~sGiqPSG-~lHLGnylGai-~~~v~lQ~--~~~~~~~IADlHAlt~-~~~~~~lr~~~~~~~a~~lA~GlDP~ks~ 121 (389)
T PLN02886 47 KRVVSGVQPTG-SIHLGNYLGAI-KNWVALQE--TYDTFFCVVDLHAITL-PHDPRELGKATRSTAAIYLACGIDPSKAS 121 (389)
T ss_pred CeEEEEECCCC-ccHHHHHHHHH-HHHHHHhc--cCCEEEEEecHHHhhC-CCCHHHHHHHHHHHHHHHHHcCcCccceE
Confidence 36999999998 89999999985 566 898 4456777899999986 46999999999999999999999999999
Q ss_pred EEeccccCcc--chHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeec
Q 015880 164 IFSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 236 (399)
Q Consensus 164 i~~~s~~~~~--~~~~-----~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~ 236 (399)
||.||++.++ .+|. .+.++.|+++++++.+..+ .+++++|.|+||+|||| |||.++++ +||
T Consensus 122 if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~-~~~~~~gll~YPvLqAA--------DILl~~a~---~VP 189 (389)
T PLN02886 122 VFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAG-DENVGVGLLTYPVLMAS--------DILLYQAD---LVP 189 (389)
T ss_pred EEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcC-CCCCChHhhhChHHHHh--------hhhhcCCC---eEE
Confidence 9999998765 3333 2568999999999887665 35789999999999999 78889885 899
Q ss_pred cccCchhHHHHHHHHHHHhCC------------------CCcceee---cccccCCCCCCCCCCCCCCC--CceeecCcH
Q 015880 237 CAIDQDPYFRMTRDVAPRIGY------------------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSA 293 (399)
Q Consensus 237 ~G~DQd~~~~l~rdla~r~~~------------------~kp~~l~---~~~lp~L~g~g~KMSKS~~n--saI~L~D~~ 293 (399)
||.||+||++||||+|+|||+ +.|..++ +.+||+|+|+.+|||||+|| |+|||+|+|
T Consensus 190 VG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~ 269 (389)
T PLN02886 190 VGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPP 269 (389)
T ss_pred EccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCH
Confidence 999999999999999999984 3555554 45899999876899999985 899999999
Q ss_pred HHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHH
Q 015880 294 KAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH 373 (399)
Q Consensus 294 ~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~ 373 (399)
++|++||++ |+||+..+++ ...+++|++++++.++..| ++.++++++++|+ + +++++||+.|++.|+++|.|+
T Consensus 270 e~I~kKI~~-a~TD~~~~i~--~~~p~~p~v~nl~~i~~~~--~~~~~eei~~~~~-~-~~~g~~K~~Lae~I~~~L~Pi 342 (389)
T PLN02886 270 DVIANKIKR-CKTDSFPGLE--FDNPERPECNNLLSIYQLV--TGKTKEEVLAECG-D-MRWGDFKPLLTDALIEHLSPI 342 (389)
T ss_pred HHHHHHHhc-CCCCCCCCcc--CCCCCCcccccHHHHHHHc--cCCCHHHHHHHhc-C-CCCchHHHHHHHHHHHHHHHH
Confidence 999999999 9999986554 3456788888888888888 4678999999997 3 689999999999999999999
Q ss_pred HHHHHHhhHH--HHHHHHhh
Q 015880 374 QVARAAVTDE--MVDAFMAV 391 (399)
Q Consensus 374 r~~~~~~~~~--~l~~~~~~ 391 (399)
|++|+++.++ +|++++..
T Consensus 343 rer~~~l~~d~~~l~~iL~~ 362 (389)
T PLN02886 343 QVRYEEIMSDPSYLDSVLKE 362 (389)
T ss_pred HHHHHHHHcCHHHHHHHHHH
Confidence 9999998864 89998865
No 15
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=1e-56 Score=456.33 Aligned_cols=290 Identities=23% Similarity=0.285 Sum_probs=247.6
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCccccccc----
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK---- 134 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~---- 134 (399)
..|.+||++++|+|++++++.++ ++++++|+||+|||++|||||+++++.++|||++ |..++++|||+|+++.+
T Consensus 8 ~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~dPTg~slHlGhlv~l~~l~~lQ~~-G~~~~~ligd~ta~igDpsgk 85 (408)
T PRK05912 8 EELKERGLIEQITDEEELEEKLA-KEPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDA-GHKPIALIGGFTGMIGDPSGK 85 (408)
T ss_pred HHHHhCCCeeecCCHHHHHHHhh-CCCCEEEEeecCCCCCccHHhHHHHHHHHHHHHC-CCcEEEEEcCceeEcCCCCCC
Confidence 45667999999999999999987 5899999999999988999999999999999997 55566668888888752
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHcCCCCCc--eEEEeccccCccchHHHHHH-HHhhcCHHHHHHhh------CCCCC
Q 015880 135 -----NLSVEESQRLARENAKDIIACGFDVTK--TFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIF------GFTGE 200 (399)
Q Consensus 135 -----~~~~e~i~~~~~~~~~~ilA~G~dp~k--t~i~~~s~~~~~~~~~~~~~-l~~~~t~~~~~~~~------g~~~~ 200 (399)
.++.+++++|+.. +...+|+|+||++ +.||+||+|.++..|..+++ +++++|+++|.++. +..++
T Consensus 86 ~~~r~~l~~e~i~~n~~~-i~~ql~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~~~~ 164 (408)
T PRK05912 86 SETRKLLTREQVAENAET-IKEQLFKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLREGQG 164 (408)
T ss_pred chhhccCCHHHHHHHHHH-HHHHHHHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhccCCC
Confidence 2688999999865 4666799999998 99999999998888888888 99999999997653 33368
Q ss_pred ccccccchhhhhcCCCCCCCcCcccccCCCcceee-ccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCC
Q 015880 201 DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI-PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMS 279 (399)
Q Consensus 201 ~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v-~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMS 279 (399)
+|+|+|+||+|||| ||+.+..+++|.+ |+|.||++|++++||+|+|+|..++..++.|+||+++| +|||
T Consensus 165 is~~ef~Yp~LQa~--------D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G--~KMs 234 (408)
T PRK05912 165 ISFTEFLYPLLQGY--------DFVALNKRYGCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDG--KKMG 234 (408)
T ss_pred CchhhhhhHHHHHh--------hHHHHhccCCCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCC--Cccc
Confidence 99999999999999 6777755566655 77999999999999999999987777788888888886 8999
Q ss_pred CCCCCCceeecC---cHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhcc-CChHHHHHHHHHHhcCCCCh
Q 015880 280 ASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLT 355 (399)
Q Consensus 280 KS~~nsaI~L~D---~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~ 355 (399)
||.+| +|||+| +|+++++||++ + + ++++ .+||++|+ .+.+++++|+++|++|. ++
T Consensus 235 KS~~n-aI~L~d~~tsp~~i~qki~~-~------~---------D~~v---~~~l~~~t~~~~~ei~~l~~~~~~g~-~~ 293 (408)
T PRK05912 235 KSEGN-AVWLDEEKTSPYEMYQKWMN-I------S---------DADV---WRYLKLLTFLSLEEIEELEEELAEGP-NP 293 (408)
T ss_pred CCCCC-ceeCCCCCCCHHHHHHHHhc-C------C---------hHHH---HHHHHHHhcCCHHHHHHHHHHHhcCC-Ch
Confidence 99855 999999 99999999998 2 1 4443 56666664 28899999999999886 99
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhH
Q 015880 356 GEVKQRLAKVLTELVERHQVARAAVTD 382 (399)
Q Consensus 356 ~~~K~~la~~i~~~l~~~r~~~~~~~~ 382 (399)
+++|+.||++|++++|+.++..++...
T Consensus 294 ~~~Kk~LA~~v~~~lhg~~~~~~a~~~ 320 (408)
T PRK05912 294 REAKKVLAEEITALVHGEEAAEAAEEA 320 (408)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 999999999999999999887766543
No 16
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-56 Score=451.41 Aligned_cols=282 Identities=19% Similarity=0.201 Sum_probs=239.2
Q ss_pred ceeEEEecCCCCCCccccchHHHHhHHh--HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 015880 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (399)
Q Consensus 85 ~~~iytG~~PTg~slHlGhlv~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt 162 (399)
..++|+|++||| .||||||++.+ .+| +|+..++.++++|||+|+++ +..+.+++++++++++++|+|||+||+++
T Consensus 2 ~~rvlSGiqPTG-~lHLGNylGai-k~~v~lq~q~~~~~~~~IADlHAlT-~~~dp~~lr~~~~e~aa~~LA~GlDPek~ 78 (431)
T PRK12284 2 TTRVLTGITTTG-TPHLGNYAGAI-RPAIAASRQPGVESFYFLADYHALI-KCDDPARIQRSTLEIAATWLAAGLDPERV 78 (431)
T ss_pred ceEEEEEecCCC-cchHHHHHHHH-HHHHHHHHhCCCcEEEEeechhhcc-CCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 357999999998 79999999995 445 55545777888899999998 45799999999999999999999999999
Q ss_pred EEEeccccCcc--chHH-----HHHHHHhhcCHHHHHHhh---CCC--CCccccccchhhhhcCCCCCCCcCcccccCCC
Q 015880 163 FIFSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230 (399)
Q Consensus 163 ~i~~~s~~~~~--~~~~-----~~~~l~~~~t~~~~~~~~---g~~--~~~~~g~~~YPllQaad~~~~~~~di~~~~~~ 230 (399)
.||.||++.++ .+|. .+.++.|+.++++..... |+. +++++|.|+||+|||| ||+.++++
T Consensus 79 ~if~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAA--------DILly~ad 150 (431)
T PRK12284 79 TFYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAA--------DILMFNAH 150 (431)
T ss_pred EEEECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHh--------hhhhcCCC
Confidence 99999999865 2332 256788888888754332 332 4589999999999999 78899885
Q ss_pred cceeeccccCchhHHHHHHHHHHHhCC-------CCccee---ecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHh
Q 015880 231 LRCLIPCAIDQDPYFRMTRDVAPRIGY-------HKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300 (399)
Q Consensus 231 ~~~~v~~G~DQd~~~~l~rdla~r~~~-------~kp~~l---~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI 300 (399)
+||||.||.||++||||||+|||+ +.|..+ ++++||||+| +|||||.+| +|+|+|+|++|++||
T Consensus 151 ---~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg--~KMSKS~~n-~I~L~Ds~~~I~kKI 224 (431)
T PRK12284 151 ---KVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDG--RKMSKSYDN-TIPLFAPREELKKAI 224 (431)
T ss_pred ---EEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCC--ccccCCCCC-EeeecCCHHHHHHHH
Confidence 899999999999999999999983 245433 3689999997 799999976 999999999999999
Q ss_pred cccccCCCchhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHh
Q 015880 301 NKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 380 (399)
Q Consensus 301 ~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~ 380 (399)
++ |+||+..+. ..++|++|++++|+++|. +.+++++++++|..| ++|++||+.|++.|+++|+|+|++++++
T Consensus 225 ~~-A~TDs~~~~-----~~~~pe~snLl~i~~~~~-~~~~~eel~~~~~~g-~~~g~~K~~Lae~i~~~L~PiRer~~~l 296 (431)
T PRK12284 225 FS-IVTDSRAPG-----EPKDTEGSALFQLYQAFA-TPEETAAFRQALADG-IGWGDAKQRLFERIDRELAPMRERYEAL 296 (431)
T ss_pred hc-CCCCCCCCC-----CCCCCCcchHHHHHHHhC-CcchHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999986532 247899999999999995 346799999999856 9999999999999999999999999999
Q ss_pred hHH--HHHHHHhh
Q 015880 381 TDE--MVDAFMAV 391 (399)
Q Consensus 381 ~~~--~l~~~~~~ 391 (399)
.++ +|++++..
T Consensus 297 ~~d~~~l~~iL~~ 309 (431)
T PRK12284 297 IARPADIEDILLA 309 (431)
T ss_pred HcCHHHHHHHHHH
Confidence 864 79988865
No 17
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=5.2e-56 Score=429.43 Aligned_cols=249 Identities=26% Similarity=0.352 Sum_probs=226.7
Q ss_pred eEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC---------CCHHHHHHHHHHHHHHHHHcCC
Q 015880 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGF 157 (399)
Q Consensus 87 ~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~---------~~~e~i~~~~~~~~~~ilA~G~ 157 (399)
++|+||+|||++|||||+++++.++|||++ |+.++|+|||+||++.++ .+++++++|+.+++++++|+|+
T Consensus 2 ~iy~G~~PTg~~lHLG~~~~~~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~ 80 (269)
T cd00805 2 KVYIGFDPTAPSLHLGHLVPLMKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILD 80 (269)
T ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 699999999989999999999999999996 889999999999999754 7999999999999999999999
Q ss_pred C--CCceEEEeccccCccchHHHHHHHHhhcCHHHHHHhhCC------CCCccccccchhhhhcCCCCCCCcCcccccCC
Q 015880 158 D--VTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 229 (399)
Q Consensus 158 d--p~kt~i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~------~~~~~~g~~~YPllQaad~~~~~~~di~~~~~ 229 (399)
+ |+++.||.||+|.++.+|.++++++++++++++.++.++ .+++++|+|+||+|||| ||+.+++
T Consensus 81 ~~~p~k~~i~~~s~~~~~l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaa--------Di~~l~~ 152 (269)
T cd00805 81 FIPPEKAKFVNNSDWLLSLYTLDFLRLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAY--------DFVYLDV 152 (269)
T ss_pred cCCCcceEEEEchHhhccCCHHHHHHHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh--------hHHHHhC
Confidence 6 999999999999988899999999999999999987653 35789999999999999 6788877
Q ss_pred CcceeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCc-eeecCcHHHHHHHhcccccCCC
Q 015880 230 HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKINKYAFSGG 308 (399)
Q Consensus 230 ~~~~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsa-I~L~D~~~~i~~KI~kyA~t~~ 308 (399)
|++|+|.||+||++++||+|+|+++.+|..+++++||+|+| +|||||.+|+. |++.|+|++|++||++ |+|+
T Consensus 153 ---~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~l~G--~KMSKS~~~~~~i~l~dsp~~i~~Ki~~-a~~~- 225 (269)
T cd00805 153 ---DLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDP- 225 (269)
T ss_pred ---CeeEecHHHHHHHHHHHHHHHHhCCCCcEEEeeccccCCCC--CcccCCCCCcccccCCCCHHHHHHHHHc-CCcH-
Confidence 69999999999999999999999999999999999999997 69999999966 7999999999999999 9986
Q ss_pred chhhHHHhhcCCCCcchHHHHHHHhcc-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 015880 309 QESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 369 (399)
Q Consensus 309 ~~t~e~~~~~g~~p~~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~ 369 (399)
+ +++|+++|+ .+++++++++++|.+|.+ ++++|+.||++|+++
T Consensus 226 --------------~---v~~~l~~~~~~~~~~~eel~~~~~~~~~-~~~~K~~la~~i~~l 269 (269)
T cd00805 226 --------------D---VLEFLKLFTFLDYEEIEELEEEHAEGPL-PRDAKKALAEELTKL 269 (269)
T ss_pred --------------H---HHHHHHHHHcCCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhC
Confidence 1 256666654 378999999999999976 999999999999863
No 18
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=7.5e-56 Score=433.15 Aligned_cols=273 Identities=33% Similarity=0.503 Sum_probs=236.3
Q ss_pred hCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC--CCHHHHHHHHHHHHHH--HHHcCC
Q 015880 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKD--IIACGF 157 (399)
Q Consensus 82 ~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~--~~~e~i~~~~~~~~~~--ilA~G~ 157 (399)
+++++++||||+|||. |||||+++++.+.|||+ .|+.++|+|||+||++.++ .+++.++.++.+++.. ++|+|+
T Consensus 2 ~~~~~~~y~G~~PTg~-lHlG~l~~~~~~~~lq~-~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~ 79 (292)
T PF00579_consen 2 ENKPFRVYTGIDPTGD-LHLGHLVPIMKLIWLQK-AGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGL 79 (292)
T ss_dssp THSSEEEEEEEESSSS--BHHHHHHHHHHHHHHH-TTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEeECCCCc-ccchHHHHHHHHHHHHh-cCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 4589999999999995 99999999999999999 5999999999999999875 4899999999999888 999999
Q ss_pred CCCceEEEeccccCccc-hHHHHHHHHhhcCHHHHHH------hhCCCCCccccccchhhhhcCCCCCCCcCcccccCCC
Q 015880 158 DVTKTFIFSDFDYVGGA-FYKNMVKVAKCVTYNKVVG------IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230 (399)
Q Consensus 158 dp~kt~i~~~s~~~~~~-~~~~~~~l~~~~t~~~~~~------~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~ 230 (399)
||+++.||.||+|.++. ++..+..+++..+++++.+ +++.++++++|+|+||+|||| ||+.++++
T Consensus 80 d~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaa--------D~~~l~~~ 151 (292)
T PF00579_consen 80 DPEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAA--------DILLLKAD 151 (292)
T ss_dssp HTTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHH--------HHHHTTHS
T ss_pred CccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEccccccc--------ceeeeccc
Confidence 99999999999998753 3334444666666655544 445456899999999999999 78889886
Q ss_pred cceeeccccCchhHHHHHHHHHHHhCCC----CcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccC
Q 015880 231 LRCLIPCAIDQDPYFRMTRDVAPRIGYH----KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFS 306 (399)
Q Consensus 231 ~~~~v~~G~DQd~~~~l~rdla~r~~~~----kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t 306 (399)
++|||.||+||++++||+|+|+|.. +|+.++++++|+|+|. +|||||++|++|||+|++++|++||++ |+|
T Consensus 152 ---~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~-~KMSKS~~ns~I~L~d~~~~i~~Ki~~-a~~ 226 (292)
T PF00579_consen 152 ---LVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQ-KKMSKSDPNSAIFLDDSPEEIRKKIKK-AFC 226 (292)
T ss_dssp ---EEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSS-SBTTTTTTGGS-BTTTTHHHHHHHHHH-SHT
T ss_pred ---cccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCc-cccCccCCccEEEEeccchhHHHHHHH-Hhh
Confidence 8999999999999999999999997 9999999999999984 499999999999999999999999999 999
Q ss_pred CCchhhHHHhhcCCCCcchH-HHHHHHhccCCh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 015880 307 GGQESVELHRKLGANLEVDI-PVKYLSFFLEDD--AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 371 (399)
Q Consensus 307 ~~~~t~e~~~~~g~~p~~~v-~~~~l~~f~~~~--~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~ 371 (399)
++.. +.++..++.|.+++ +++++..+..++ .+++++.++|.+|.++++++|+++++.++++++
T Consensus 227 ~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 227 DPDR--ENPRLLKGRPFISPFLIERLEAFHGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp STTS--HHHHHHHHHHTHHHHHHHHHHHHHHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCc--ccccccccCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 9987 55666777888888 788888775333 378999999999999999999999999999874
No 19
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.2e-54 Score=455.14 Aligned_cols=307 Identities=18% Similarity=0.236 Sum_probs=253.0
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccch-HHHHhHHhHHhhCCCeEEEEecCcccccccC--C
Q 015880 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHL-VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (399)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhl-v~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~--~ 136 (399)
.+++|+.-... ..++|.+.+++++++++|+|++||| .|||||+ +..+...-+++. |+.++++|||+||+++.+ .
T Consensus 8 ~ll~r~~~Evi-~~eeL~~ll~~~~~~rv~sGi~PTG-~lHLGng~~~aik~~~~~q~-g~~~~~lIAD~HAlt~~~~~~ 84 (682)
T PTZ00348 8 KLLRSVGEECI-QESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTQA-GCEFVFWVADWFALMNDKVGG 84 (682)
T ss_pred HHHhcCceeec-CHHHHHHHHhcCCCCEEEEeeCCCC-cCeeccHHHHHHHHHHHHhC-CCeEEEEEcchhhhcCCCCCC
Confidence 45677764333 4566677778888999999999999 7999994 444322224443 778899999999999653 5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC-cc--chHHHHHHHHhhcCHHHHHHh---hCCCC-Cccccccchh
Q 015880 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG--AFYKNMVKVAKCVTYNKVVGI---FGFTG-EDHIGKVSFP 209 (399)
Q Consensus 137 ~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~-~~--~~~~~~~~l~~~~t~~~~~~~---~g~~~-~~~~g~~~YP 209 (399)
+.++++.++.++++.|+|+|+||+++.||.||+|. ++ .+|..++.+++++|++++++. +|+.+ ++++|+++||
T Consensus 85 ~l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~lv~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YP 164 (682)
T PTZ00348 85 ELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRTVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYP 164 (682)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccceEEEECcHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhh
Confidence 88999988889999999999999999999999854 33 578889999999999999875 45544 5899999999
Q ss_pred hhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCC-CCcceeecccccCCCCCCCCCCCCCCCCcee
Q 015880 210 PVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIY 288 (399)
Q Consensus 210 llQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~-~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~ 288 (399)
+|||| ||+.+++| ++|||.||+||+++|||+|+++|. ++|.++++++||||+|+++|||||+|+|+||
T Consensus 165 vLQAA--------DIl~l~ad---ivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~ 233 (682)
T PTZ00348 165 LMQCA--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIF 233 (682)
T ss_pred HHHhh--------cccccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeec
Confidence 99999 67788886 789999999999999999999995 5788888999999997668999999988999
Q ss_pred ecCcHHHHHHHhcccccCCCchhhHHHhhcCCCC----cchHHHHHHHhccC--C-------h---HHHHHHHHHHhcCC
Q 015880 289 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANL----EVDIPVKYLSFFLE--D-------D---AELEHIKKEYGAGG 352 (399)
Q Consensus 289 L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p----~~~v~~~~l~~f~~--~-------~---~eleei~~~~~~G~ 352 (399)
|+|+|++|++||++ |||++..........+|+| +.+++++|++++.. . + +++++++++|++|.
T Consensus 234 L~Dspe~I~kKI~k-A~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~~~i~~~~~~~~eele~~y~~g~ 312 (682)
T PTZ00348 234 MEDTEEDVARKIRQ-AYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAVATIDGTTYATYEDLEQAFVSDE 312 (682)
T ss_pred ccCCHHHHHHHHHh-CCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchhcccCCcccCcHHHHHHHHhcCC
Confidence 99999999999999 9998642101112345666 66888899888631 1 2 67899999999999
Q ss_pred CChHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 015880 353 MLTGEVKQRLAKVLTELVERHQVARAAVT 381 (399)
Q Consensus 353 ~~~~~~K~~la~~i~~~l~~~r~~~~~~~ 381 (399)
+++++||+.||+.|+++|.|+|++++.-.
T Consensus 313 l~~~dlK~~lae~l~~~L~PIRe~~~~~~ 341 (682)
T PTZ00348 313 VSEEALKSCLIDEVNALLEPVRQHFASNP 341 (682)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 99999999999999999999999998654
No 20
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2e-54 Score=418.84 Aligned_cols=251 Identities=20% Similarity=0.271 Sum_probs=219.9
Q ss_pred eEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC---------CCHHHHHHHHHHHHHHHHHcCC
Q 015880 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGF 157 (399)
Q Consensus 87 ~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~---------~~~e~i~~~~~~~~~~ilA~G~ 157 (399)
.+|+||+|||++|||||++|++.++|||++ |+.++++|||+||++.++ ++.+++++|+.+++++++|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~l~~~~~lq~~-g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIGLLTFRRFQHA-GHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHHHHHHHHHHHC-CCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 489999999988999999999999999995 677888899999998643 2899999999999999999999
Q ss_pred C--CCceEEEeccccCcc-chHHHHHHHHhhcCHHHHHHhhCCC----CCccccccchhhhhcCCCCCCCcCcccccCCC
Q 015880 158 D--VTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGFT----GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230 (399)
Q Consensus 158 d--p~kt~i~~~s~~~~~-~~~~~~~~l~~~~t~~~~~~~~g~~----~~~~~g~~~YPllQaad~~~~~~~di~~~~~~ 230 (399)
| |+++.||+||+|.+. .++..+..+++++|+++|+++.+++ +++++|+|+||+|||| ||+.++++
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~Yp~lQaa--------D~l~l~~~ 151 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSEEGISATEFTYPPLQAA--------DFLLLNTT 151 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhcCCCCchhhhhHHHHHH--------HHHHHhcc
Confidence 9 999999999999865 4455556699999999999987764 3899999999999999 67888887
Q ss_pred cce-eeccccCchhHHHHHHHHHHHhC-CCCcceeecccccCCCCCCCCCCCCCCCCcee---ecCcHHHHHHHhccccc
Q 015880 231 LRC-LIPCAIDQDPYFRMTRDVAPRIG-YHKPALIESSFFPALQGETGKMSASDPNSAIY---VTDSAKAIKNKINKYAF 305 (399)
Q Consensus 231 ~~~-~v~~G~DQd~~~~l~rdla~r~~-~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~---L~D~~~~i~~KI~kyA~ 305 (399)
++| ++|+|.||+||++++||+|+|+| +++|..++.++||+|+| .|||||.+| +|| +.|+|++|++||++ |+
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G--~KMSKS~~~-~i~l~~~~dsp~~i~~ki~~-a~ 227 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDG--PKFGKSESG-PKWLDTEKTSPYEFYQFWIN-AV 227 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCC--CcCCCCCCC-CccccccCCCHHHHHHHHHc-cc
Confidence 778 88999999999999999999997 57898999999999998 599999998 666 48999999999999 76
Q ss_pred CCCchhhHHHhhcCCCCcchHHHHHHHhcc-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 015880 306 SGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 369 (399)
Q Consensus 306 t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~ 369 (399)
.+.+++|+++|+ .+.+++++|++++.+| .+.+++|+.||++|+++
T Consensus 228 ------------------d~~v~~~~~~~t~~~~~ei~~i~~~~~~~-~~~~~~K~~La~~i~~~ 273 (273)
T cd00395 228 ------------------DSDVINILKYFTFLSKEEIERLEQEQYEA-PGYRVAQKTLAEEVTKT 273 (273)
T ss_pred ------------------HhHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhC
Confidence 123467888775 4889999999999888 47899999999999864
No 21
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-49 Score=370.02 Aligned_cols=286 Identities=21% Similarity=0.310 Sum_probs=244.7
Q ss_pred ceeEEEecCCCCCCccccchHHHHhHHh--HHhhCCC--eEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 015880 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKV--PLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVT 160 (399)
Q Consensus 85 ~~~iytG~~PTg~slHlGhlv~~~~~~~--lQ~~~~~--~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~ 160 (399)
+-++++|++||| ++|||||++. ..+| ||+..+. .+.+.|+|.|+.+.-..+ .+++++..+.++.++|||+||+
T Consensus 13 ~~rvfSGIQPTG-~~HLGNYLGa-i~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp-~~lrq~~~dm~A~lLAcGIdp~ 89 (347)
T KOG2713|consen 13 PKRVFSGIQPTG-IPHLGNYLGA-IKPWVQLQNEYDKNILVLFSVVDLHAITVPQDP-AELRQATHDMAASLLACGIDPE 89 (347)
T ss_pred cceeEeccCCCC-Cchhhhhhhh-hhHHHHHHHHhcCCceEEEEEeeceeecCCCCh-HHHHHHHHHHHHHHHHhccCcc
Confidence 568999999998 9999999999 4788 8886543 455668999999854344 4999999999999999999999
Q ss_pred ceEEEeccccCcc---chHH----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcce
Q 015880 161 KTFIFSDFDYVGG---AFYK----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 233 (399)
Q Consensus 161 kt~i~~~s~~~~~---~~~~----~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~ 233 (399)
|+.+|.||+++.| .|+. .+.+++|+++|++...+++ ....++|.|+||+|||| ||+.++++
T Consensus 90 Ks~lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~-~~~~~vGLftYPvLqAA--------DILLYksT--- 157 (347)
T KOG2713|consen 90 KSSLFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFK-VGDVPVGLFTYPVLQAA--------DILLYKST--- 157 (347)
T ss_pred cceeeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhc-cCccceeeecchhHhhh--------hHhhhccc---
Confidence 9999999999876 2333 3678999999998887654 35689999999999999 78999884
Q ss_pred eeccccCchhHHHHHHHHHHHhCC-------CCcceee---cccccCCCCCCCCCCCCCCC--CceeecCcHHHHHHHhc
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRIGY-------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKIN 301 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~~~-------~kp~~l~---~~~lp~L~g~g~KMSKS~~n--saI~L~D~~~~i~~KI~ 301 (399)
.||||.||-||++++|++|+++|. +.|..+. +..+.+|..|.+|||||+|| +.|.|+|+|+.|.+||+
T Consensus 158 hVPVGeDQsQHleL~r~lA~~fN~~Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ 237 (347)
T KOG2713|consen 158 HVPVGEDQSQHLELARHLAQAFNKTYGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIK 237 (347)
T ss_pred cccCCccHHHHHHHHHHHHHHHhhhccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHH
Confidence 799999999999999999999984 4555443 67899999999999999987 79999999999999999
Q ss_pred ccccCCCchhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 015880 302 KYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 381 (399)
Q Consensus 302 kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~ 381 (399)
| |.|+.. ....++.++.|.+.++..++... ++.+++++.+.+++ +.++++|..+|++|++-|.|+|++++++.
T Consensus 238 k-a~TD~~--~~vtYd~~~RpgvsNLlni~aaV--t~~s~eeV~~~~a~--~~~~~fK~~vaeAvie~L~PIr~~fee~~ 310 (347)
T KOG2713|consen 238 K-AQTDNT--SGVTYDPANRPGVSNLLNIYAAV--TGKSIEEVVEESAN--MSTADFKDNVAEAVIEHLAPIRTEFEELI 310 (347)
T ss_pred H-Hhcccc--cceeeCCccccchhHHHHHHHHH--cCCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9 999953 34457888999999888888777 67788999987774 89999999999999999999999999998
Q ss_pred H--HHHHHHHhhC
Q 015880 382 D--EMVDAFMAVR 392 (399)
Q Consensus 382 ~--~~l~~~~~~~ 392 (399)
. ++|++++..+
T Consensus 311 ~~~~~l~kvl~~G 323 (347)
T KOG2713|consen 311 NEPEYLDKVLEEG 323 (347)
T ss_pred cCHHHHHHHHHHh
Confidence 6 4888888653
No 22
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=6.7e-48 Score=388.23 Aligned_cols=281 Identities=25% Similarity=0.285 Sum_probs=234.5
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC---
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--- 135 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~--- 135 (399)
..+.+||++..+++.+.+.+.+++ ++++|+||+|||++|||||+++++.+++||++ |+.++++|||+|+++.++
T Consensus 6 ~~l~~rg~~~~~t~~~~l~~ll~~--~~~vy~G~dPTg~~lHlGh~v~l~~l~~lq~~-G~~~~iligd~ta~igdpsg~ 82 (377)
T TIGR00234 6 LLLKKRGLEVQVPEEEELLKLLER--KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQA-GHEVIVLLGDATALIGDPSGK 82 (377)
T ss_pred HHHHHCCCEEEcCCHHHHHHHhcC--CCEEEEeeCCCCCCccHHHHHHHHHHHHHHHC-CCcEEEEEeccchhhcCCCCh
Confidence 567899999999998777766655 89999999999999999999999999999997 667777799999998753
Q ss_pred ------CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCccchHHH-HHHHHhhcCHHHHHHhhCCC----CCcccc
Q 015880 136 ------LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN-MVKVAKCVTYNKVVGIFGFT----GEDHIG 204 (399)
Q Consensus 136 ------~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~-~~~l~~~~t~~~~~~~~g~~----~~~~~g 204 (399)
++.+++++|+ ++++.++|+|+||+++.|+.||+|.....|.. +.++++++|+++|+++.++. ++++++
T Consensus 83 ~~~R~~~~~~~i~~n~-~~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~~~~is~~ 161 (377)
T TIGR00234 83 SEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRLERGISLS 161 (377)
T ss_pred HHHhhcCCHHHHHHHH-HHHHHHHHHhCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHHhcCCCch
Confidence 5778888888 67888999999999999999999987654444 45599999999999987653 479999
Q ss_pred ccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCC
Q 015880 205 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 284 (399)
Q Consensus 205 ~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~n 284 (399)
+|+||+|||| ||+.+++| ++++|.||++|++.+||+|+|++...+..+..+++++++| .|||||.+|
T Consensus 162 ef~YpllQa~--------D~~~l~~d---i~~gG~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg--~KmgKS~~~ 228 (377)
T TIGR00234 162 EFIYPLLQAY--------DFVYLNVD---LQIGGSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADG--EKMGKSGGG 228 (377)
T ss_pred hhhhHHHHHH--------HHHHHcCC---eeEecchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCC--CCccCCCCC
Confidence 9999999999 78889887 8899999999999999999999977777777888888885 899999887
Q ss_pred CceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhcc-CChHHHHHHHHHHhcCCCChHHHHHHHH
Q 015880 285 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLA 363 (399)
Q Consensus 285 saI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~~~~K~~la 363 (399)
+||+++++ |.+++++.. .|| +++.+|+++|+ .+.+++++|.+ ..+ .+++.+|+.+|
T Consensus 229 -~i~l~~~~---------~~~~i~~~d---------~~D-~~~~Ki~k~~t~~~~~ei~~l~~--~~~-~~~~~~q~~la 285 (377)
T TIGR00234 229 -AVSLDEGK---------YDFYQFWIN---------TPD-EDVKKILKLFTFLGLEEIEALVE--LKG-PSPREVKENLA 285 (377)
T ss_pred -cccCCccH---------hhhhhhhcC---------CcH-HHHHHHHHHcCCCcHHHHHHHHH--hcc-cCHHHHHHHHH
Confidence 99999854 566666653 344 34567777775 36678888865 334 68999999999
Q ss_pred HHHHHHhhHHHHHHHH
Q 015880 364 KVLTELVERHQVARAA 379 (399)
Q Consensus 364 ~~i~~~l~~~r~~~~~ 379 (399)
.++++++|+.....++
T Consensus 286 ~ei~~~vhg~~~~~~a 301 (377)
T TIGR00234 286 KEITKYVHGEEAALAA 301 (377)
T ss_pred HHHHHHhcCHHHHHHH
Confidence 9999999997765544
No 23
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-47 Score=381.06 Aligned_cols=299 Identities=25% Similarity=0.329 Sum_probs=249.9
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC-CC
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LS 137 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-~~ 137 (399)
..|+.||++....+.+.+.+.++.+ ++.+|+||||||+++||||+++++++++||++ |+.++++|||+|++++++ ..
T Consensus 7 ~~L~~Rg~~~~i~~ee~l~~ll~~~-~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~a-Gh~~ivLigd~ta~IgDpsGk 84 (401)
T COG0162 7 LELIKRGLIEQITDEEELRKLLEEG-PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDA-GHKPIVLIGDATAMIGDPSGK 84 (401)
T ss_pred HHHHHcCchhccCcHHHHHHHHhcC-CceEEEeeCCCCCccchhhHHHHHHHHHHHHC-CCeEEEEecccceecCCCCCC
Confidence 5789999999999988888777775 99999999999999999999999999999997 666777799999999876 66
Q ss_pred HHHHHHHHH----HHHHHHH-HcCCCCC-ceEEEeccccCccchHHHHH-HHHhhcCHHHHHHhhCC------CCCcccc
Q 015880 138 VEESQRLAR----ENAKDII-ACGFDVT-KTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFGF------TGEDHIG 204 (399)
Q Consensus 138 ~e~i~~~~~----~~~~~il-A~G~dp~-kt~i~~~s~~~~~~~~~~~~-~l~~~~t~~~~~~~~g~------~~~~~~g 204 (399)
.++++..+. +|++.+. ++|..++ ++.+++||+|..+.-|..++ ++++++|+++|+++..+ .++++++
T Consensus 85 ~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~~~~is~~ 164 (401)
T COG0162 85 SEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGISFT 164 (401)
T ss_pred HHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhccCCCCchh
Confidence 666665554 5555554 4676666 99999999999765555555 59999999999998643 3479999
Q ss_pred ccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCC
Q 015880 205 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 284 (399)
Q Consensus 205 ~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~n 284 (399)
||.||+|||| |++++++| +..+|.||+.++.++||+++|+|+.++.+++.|+|++|+| +|||||.+|
T Consensus 165 Ef~YpLmQay--------D~~~L~~d---lq~GG~DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG--~KmgKs~~~ 231 (401)
T COG0162 165 EFNYPLLQAY--------DFVYLNKD---LQLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDG--KKMGKSEGG 231 (401)
T ss_pred hhhhHHHHHH--------HHHHHccc---hhcCChHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCC--CcccccCCC
Confidence 9999999999 78999987 5567777777777789999999999999999999999998 599999999
Q ss_pred CceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhcc-CChHHHHHHHHHHhcCCCChHHHHHHHH
Q 015880 285 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLA 363 (399)
Q Consensus 285 saI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~~~~K~~la 363 (399)
++|++. ++.++|.++|++.++ +|.+ +..|+.+++ .+.+++++|.+....+. +++++|+.||
T Consensus 232 -a~~~~s------~~~Sp~~~yq~~~~i---------~D~~-~~~~~~~~t~l~~~eI~~i~~~~~~~~-~~r~~k~~LA 293 (401)
T COG0162 232 -AVWLDS------EKTSPYDFYQYWMNI---------EDAD-VKRFLKLLTFLSLEEIEEIEKYVLKGP-EPREAKKLLA 293 (401)
T ss_pred -ceEccC------CCCCcHhhhhcHhcC---------cHHH-HHHHHHHhCcCChHHHHHHHHHhhcCC-ChHHHHHHHH
Confidence 999999 889999999999864 3444 468888874 35589999999888885 8999999999
Q ss_pred HHHHHHhhHHHHHHHHhhHHHHHHHHhhC
Q 015880 364 KVLTELVERHQVARAAVTDEMVDAFMAVR 392 (399)
Q Consensus 364 ~~i~~~l~~~r~~~~~~~~~~l~~~~~~~ 392 (399)
.+++..+||-....++... .+..+..+
T Consensus 294 ~e~~~~~hG~~~a~~a~~~--~~~~F~~g 320 (401)
T COG0162 294 KEVTKLVHGEEAAEAAEEE--FEKLFSEG 320 (401)
T ss_pred HHhhHhhcCHHHHHHHHHH--HHHHHhcC
Confidence 9999999999888776553 55555444
No 24
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-42 Score=326.30 Aligned_cols=297 Identities=21% Similarity=0.262 Sum_probs=234.7
Q ss_pred hHHhcCc--ccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC-C
Q 015880 60 VFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-L 136 (399)
Q Consensus 60 ~l~~Rgi--~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-~ 136 (399)
.|++|++ +.+. +.|.+.+++ +.+.+|+|+.||| +||+|..+|++.++.|-++ ||.|.|++||+||++++. .
T Consensus 11 ~lItrnlqE~lge---e~lk~iL~e-r~l~~YwGtaptG-rpHiay~vpm~kiadflkA-GC~VtIl~AD~hA~LdNmka 84 (360)
T KOG2144|consen 11 KLITRNLQEVLGE---EELKNILAE-RALKCYWGTAPTG-RPHIAYFVPMMKIADFLKA-GCEVTILFADLHAFLDNMKA 84 (360)
T ss_pred HHHHHHHHHHhCH---HHHHHHHhc-cCceeeecCCCCC-CcceeeeeehhHHHHHHhc-CCeEEEEehHHHHHHhcccc
Confidence 4555554 2333 333344455 7889999999998 8999999999988888886 999999999999999874 7
Q ss_pred CHHHHHHHHHHHHHHHHH----cCCCCCceEEEeccccCc-cchHHHHHHHHhhcCHHHHHHh--hCCC--CCccccccc
Q 015880 137 SVEESQRLARENAKDIIA----CGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKCVTYNKVVGI--FGFT--GEDHIGKVS 207 (399)
Q Consensus 137 ~~e~i~~~~~~~~~~ilA----~G~dp~kt~i~~~s~~~~-~~~~~~~~~l~~~~t~~~~~~~--~g~~--~~~~~g~~~ 207 (399)
.++.+.+.+.++-..|.| .+.+.++..+..-|++-. ..|-.++.++.+.+|-..++.. .+.+ +..+++.+.
T Consensus 85 p~e~~~~rv~yYe~~Ik~~l~~~nv~lEkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~agaevvkqve~plls~ll 164 (360)
T KOG2144|consen 85 PDELVIRRVGYYEKEIKAALGSINVPLEKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGAEVVKQVENPLLSGLL 164 (360)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCcHHHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhhhHHHhhcchhhhhhh
Confidence 888887777666555443 345556655554444433 3455677888888887776654 3332 567889999
Q ss_pred hhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCce
Q 015880 208 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 287 (399)
Q Consensus 208 YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI 287 (399)
||.|||+ |++.+.+| ..++|.||+..+.++|++++.+|++||.++.++++|||++ |+|||||+|+|+|
T Consensus 165 YP~MQal--------De~~L~vD---~qfgGvDQRKIf~~A~eylp~l~ykKrihLmnpMvPGL~q-~~KMSsSd~~SkI 232 (360)
T KOG2144|consen 165 YPGMQAL--------DEFYLEVD---AQFGGVDQRKIFVLAEEYLPDLGYKKRIHLMNPMVPGLAQ-GEKMSSSDPLSKI 232 (360)
T ss_pred hhhHHHh--------hHHHHhhh---HHhcCccHHHHHHHHHHhhhhhCcccceeecCCCCccccc-cCccccCCccccc
Confidence 9999999 57778887 4689999999999999999999999999999999999997 6999999999999
Q ss_pred eecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchH----HHHHHHhccC-------------ChHHHHHHHHHHhc
Q 015880 288 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI----PVKYLSFFLE-------------DDAELEHIKKEYGA 350 (399)
Q Consensus 288 ~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v----~~~~l~~f~~-------------~~~eleei~~~~~~ 350 (399)
+|.|+|++|.+||++ |||.+... .+|+.... +|.++..|.. +..++++++++|.+
T Consensus 233 dllD~~~~V~kKI~k-AfCePg~v-------e~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~tf~syed~e~~y~~ 304 (360)
T KOG2144|consen 233 DLLDEPADVNKKIKK-AFCEPGNV-------EGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKTFKSYEDIEKDYEE 304 (360)
T ss_pred ccccCHHHHHHHHHH-hcCCCCCc-------CCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcchhHHHHHHHHHHHh
Confidence 999999999999999 99998653 25765432 1223332210 35889999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhHHHHHHHHhhH
Q 015880 351 GGMLTGEVKQRLAKVLTELVERHQVARAAVTD 382 (399)
Q Consensus 351 G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~ 382 (399)
|++||+|+|+.|+..|+++|.++|+..+...+
T Consensus 305 ~~lhPgDLK~~l~~alN~lL~~ir~~~~~~~~ 336 (360)
T KOG2144|consen 305 GELHPGDLKKGLEKALNELLQPIREEFSNWPE 336 (360)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 99999999999999999999999998887554
No 25
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-42 Score=337.94 Aligned_cols=290 Identities=19% Similarity=0.248 Sum_probs=226.9
Q ss_pred hhHHhcCcccccCCHHH---HHHHHH-hCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEE------ecCc
Q 015880 59 HVFLRRGVFFAHRDLND---ILDAYE-KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQ------LTDD 128 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~---ll~~~~-~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~------I~D~ 128 (399)
-.+..||+| ++.-.+. ..+.++ .|-|.+||+|||||++|+|+||++++|-+-|+|.+++.++.++ ||||
T Consensus 34 ~~l~aR~l~-~~s~Pet~~~~~~~L~~rglp~~vYcGfDPTA~SLHvGNLl~lm~L~hfqr~Gh~~ialIGgATa~vGDP 112 (467)
T KOG2623|consen 34 TELKARGLF-QTSFPETLSKCSEDLNGRGLPQYVYCGFDPTAESLHVGNLLALMVLIHFQRAGHRPIALIGGATASVGDP 112 (467)
T ss_pred HHHHhcccc-cccCCCccchhhhhhhcCCCCceEEecCCCcHHhhhhcchHHHHHHHHHHHcCCCceEEeccccccccCC
Confidence 467789988 4443332 334443 5558999999999999999999999999999999988887774 8899
Q ss_pred ccc-cccC-CCHHHHHHHHHHHHHHHH---H-------cCCCCCceEEEeccccCccchHHHHHH-HHhhcCHHHHHHh-
Q 015880 129 EKC-MWKN-LSVEESQRLARENAKDII---A-------CGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGI- 194 (399)
Q Consensus 129 ~a~-~~~~-~~~e~i~~~~~~~~~~il---A-------~G~dp~kt~i~~~s~~~~~~~~~~~~~-l~~~~t~~~~~~~- 194 (399)
++. +.|+ +.-+.+++|++..-..+. + +|..-.+-+|++|++|.+..-..+|+. +++|+.+..|+++
T Consensus 113 SGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~ 192 (467)
T KOG2623|consen 113 SGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARD 192 (467)
T ss_pred CCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHH
Confidence 955 3454 666777777754433332 2 344335669999999987666666665 8888888777765
Q ss_pred -----hCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHH--HHHHHHhCCCCcceeeccc
Q 015880 195 -----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT--RDVAPRIGYHKPALIESSF 267 (399)
Q Consensus 195 -----~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~--rdla~r~~~~kp~~l~~~~ 267 (399)
+...+++|++||+|++|||| |++++..+++|.+|+|+. |||+||+ .|+++|+-..+ +..++.+
T Consensus 193 SV~~RLes~~GlSftEFtYQ~lQAY--------Dfy~L~~~~g~~~QlGGs-DQwGNitaG~dlI~ki~~~~-~~vfGlT 262 (467)
T KOG2623|consen 193 SVKSRLESPNGLSFTEFTYQLLQAY--------DFYHLYENYGCRFQLGGS-DQWGNITAGTDLIRKIMPIQ-AFVFGLT 262 (467)
T ss_pred HHHHhhcCCCCCcHHHHHHHHHHHH--------hHHHHHHhcCeeEEeccc-ccccccchHHHHHHHhcccc-cceeeee
Confidence 44568999999999999999 789999999999987777 7777766 89999976422 4556777
Q ss_pred ccCCCCC-CCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhcc-CChHHHHHHH
Q 015880 268 FPALQGE-TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIK 345 (399)
Q Consensus 268 lp~L~g~-g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~-~~~~eleei~ 345 (399)
+|.|+.+ |.|++||++| ||||+. .|+++|++||+... -||.++ -++|+.|+ .+.+++++|.
T Consensus 263 ~PLlTsstG~KlGKSaGn-AvWLdp------~~tspy~lYQfF~~---------~pDd~v-~k~LklfTfl~l~eI~~I~ 325 (467)
T KOG2623|consen 263 FPLLTSSTGAKLGKSAGN-AVWLDP------SKTSPYHLYQFFAS---------LPDDDV-EKFLKLFTFLPLEEIKQIL 325 (467)
T ss_pred eeeEecCcchhhccCCCc-eEEecC------ccCCcHHHHHHHHh---------CchhHH-HHHHHHHhcCCHHHHHHHH
Confidence 7777654 7999999999 999999 99999999999875 577665 47777764 4889999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhHHHHHH
Q 015880 346 KEYGAGGMLTGEVKQRLAKVLTELVERHQVAR 377 (399)
Q Consensus 346 ~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~ 377 (399)
+.+.+. +..+..++.||++|+++||+...-.
T Consensus 326 ~~H~k~-P~~r~aQ~~LA~eVTr~VHG~egL~ 356 (467)
T KOG2623|consen 326 EEHRKE-PSQRIAQKLLAAEVTRMVHGKEGLE 356 (467)
T ss_pred HHHhcC-hhhhhHHHHHHHHHHHHHcccchHH
Confidence 999976 6899999999999999999976543
No 26
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.7e-35 Score=311.66 Aligned_cols=243 Identities=15% Similarity=0.176 Sum_probs=208.9
Q ss_pred HhHHhhCCCeEEEEecCcccccccC--CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC-cc--chHHHHHHHHhh
Q 015880 111 KYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG--AFYKNMVKVAKC 185 (399)
Q Consensus 111 ~~lQ~~~~~~v~I~I~D~~a~~~~~--~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~-~~--~~~~~~~~l~~~ 185 (399)
.+|+++.||.++|+||||||+++++ .++++|++.++++++.|.|+|+|++ +.++..|+.. ++ .||..+++++++
T Consensus 400 ~~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~ 478 (682)
T PTZ00348 400 DFIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARK 478 (682)
T ss_pred HHHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHh
Confidence 3478888999999999999999986 8999999999999999999999998 8666666654 32 899999999999
Q ss_pred cCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCCCCcceeec
Q 015880 186 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 265 (399)
Q Consensus 186 ~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~ 265 (399)
+|++++++++| .+..+++++.||+||++ ||+++++| +.++|.||+..++++|+++++... |..+++
T Consensus 479 ~tl~r~~r~~g-~~~~~~s~~iYP~MQ~~--------Di~~L~~d---i~~gG~DQRki~mlAre~~~~~~~--~~~~~~ 544 (682)
T PTZ00348 479 NLLSHVEELYG-GELRNAGQVIAALMRVA--------TALMLSAS---HVISTSLDGGINEFAREYTKGRIE--CIQALE 544 (682)
T ss_pred ccHHHHHHHhc-CCcccHHHHHHHHHHHH--------HHHhcCCC---eeecChhHHHHHHHHHHhcccccc--chhhcC
Confidence 99999999987 56669999999999999 78889987 578999999999999999996543 444678
Q ss_pred ccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHH-Hhc---c-C----
Q 015880 266 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL-SFF---L-E---- 336 (399)
Q Consensus 266 ~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l-~~f---~-~---- 336 (399)
.++|+|.++..+|++|+++|+|||+|++++|++||++ |||.... + +||..+.+ +|+ ..+ . +
T Consensus 545 ~~~p~l~~~~~~~~~~s~~s~i~~~D~~~~i~~Ki~k-A~Cpp~~--~------~Npvl~~~-~y~~~~~~~~~i~R~e~ 614 (682)
T PTZ00348 545 GRVPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNE--E------ANPVISVA-QHLLAQQGALSIERGEA 614 (682)
T ss_pred CCCccccccccccCCCCCCCeeeecCCHHHHHHHHHh-CCCCCCC--C------CCcHHHHH-HHHhcCCCeEEEecccc
Confidence 8999999877889999889999999999999999999 9998743 2 58865543 333 111 1 0
Q ss_pred -----ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHH
Q 015880 337 -----DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 378 (399)
Q Consensus 337 -----~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~ 378 (399)
..+++++|+++|.+|++||.++|.++|+.|+++|+|+|+.++
T Consensus 615 ~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 615 NGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred cCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347899999999999999999999999999999999999997
No 27
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.39 E-value=1.6e-12 Score=114.13 Aligned_cols=65 Identities=17% Similarity=0.072 Sum_probs=54.4
Q ss_pred hhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCCC-CcceeecccccCCCCCCCCCCCCC
Q 015880 208 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASD 282 (399)
Q Consensus 208 YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~-kp~~l~~~~lp~L~g~g~KMSKS~ 282 (399)
|++.|+| |++.+.....+++++|.||.+|++..++++++++.. +|..++..+|++..| +|||||.
T Consensus 78 y~~~~~a--------~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g--~KmSks~ 143 (143)
T cd00802 78 YMFLQAA--------DFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADG--TKMSKSK 143 (143)
T ss_pred HHHHHHH--------HHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCC--CcCCCCC
Confidence 9999999 455555544567899999999999999999999764 688888888888875 7999994
No 28
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.22 E-value=6.9e-11 Score=112.54 Aligned_cols=155 Identities=14% Similarity=0.186 Sum_probs=109.4
Q ss_pred CCCCCCccccchHHHHhHHhH-HhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 015880 93 GPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------I 164 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~-------i 164 (399)
.||| .|||||+..++ .+|+ .+..|..+++-|-|.- ...+. ..+...+.+++..+|+++++.. +
T Consensus 9 sPtG-~LHlG~~~~al-~n~l~ar~~~G~~ilRieDtd----~~r~~---~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~ 79 (239)
T cd00808 9 SPTG-FLHIGGARTAL-FNYLFARKHGGKFILRIEDTD----QERSV---PEAEEAILEALKWLGLDWDEGPDVGGPYGP 79 (239)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCeEEEEECcCC----CCCCc---hHHHHHHHHHHHHcCCCCCcCCccCCCCCC
Confidence 4788 89999999995 7774 3344666666677732 11222 2344466677778999998742 7
Q ss_pred EeccccCccchHHHHH-HHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchh
Q 015880 165 FSDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 243 (399)
Q Consensus 165 ~~~s~~~~~~~~~~~~-~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~ 243 (399)
|.||+-. ..|..+. ++- . .| -|..+|++.+++| |. ..+. +.|+.|.|+..
T Consensus 80 ~~QS~r~--~~y~~~~~~L~---------~-~g------dg~ptY~~a~~vD-------D~-~~~i---thViRG~D~~~ 130 (239)
T cd00808 80 YRQSERL--EIYRKYAEKLL---------E-KG------DGFPTYHLANVVD-------DH-LMGI---THVIRGEEHLS 130 (239)
T ss_pred EeeeCCH--HHHHHHHHHHH---------H-cC------CCCcccccHHHHh-------HH-hcCC---CEEEEChhhhh
Confidence 8888643 3343332 221 1 11 2788999999996 54 4444 47899999999
Q ss_pred HHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCce
Q 015880 244 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 287 (399)
Q Consensus 244 ~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI 287 (399)
+....+.+++.+|.+.|...|.+.++..+| .||||+.++.+|
T Consensus 131 ~t~~q~~l~~aLg~~~p~~~h~pll~~~~g--~KLSKR~~~~~l 172 (239)
T cd00808 131 STPKQILLYEALGWEPPKFAHLPLILNPDG--KKLSKRKGDTSI 172 (239)
T ss_pred ChHHHHHHHHHcCCCCCceEeeccccCCCC--CcccCCCCCccH
Confidence 999999999999999998878888777775 899999887444
No 29
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.03 E-value=9.2e-09 Score=108.29 Aligned_cols=207 Identities=18% Similarity=0.259 Sum_probs=116.1
Q ss_pred HHHHHHHHhCCceeEEEecCCCCCCccccchHHHH----hHHhHHhhCCCeE-EEEecCccccccc---CCCH-HHH---
Q 015880 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPL-VIQLTDDEKCMWK---NLSV-EES--- 141 (399)
Q Consensus 74 ~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v-~I~I~D~~a~~~~---~~~~-e~i--- 141 (399)
++|+++..++.++.+=||+.||| .+||||+-..+ +.++|... |..+ +|..+|+|.-+.+ .++. +++
T Consensus 13 ~~~~~r~~~~~~~~~~~g~~psG-~~HiG~~~e~~~~d~v~r~lr~~-G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~ 90 (510)
T PRK00750 13 EKIIKRLGKKPPVVVETGIGPSG-LPHIGNFREVARTDMVRRALRDL-GIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEY 90 (510)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCC-CcccccccchhhHHHHHHHHHHc-CCcEEEEEEEecCCcccccCCCCCchHHHHHh
Confidence 44555444444589999999998 89999976543 44556665 5554 5557899854321 1111 111
Q ss_pred ---------------HHHHHHH----HHHHHHcCCCCCceEEEeccccCccchHHHHH-H-HHhhcCHHHHHHhh-CCC-
Q 015880 142 ---------------QRLAREN----AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-K-VAKCVTYNKVVGIF-GFT- 198 (399)
Q Consensus 142 ---------------~~~~~~~----~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~-~-l~~~~t~~~~~~~~-g~~- 198 (399)
..++..+ .+.+-.+|++.+ ++++++...+..|...+ . |.++=.+.+++..+ |..
T Consensus 91 ~G~pl~~~p~p~G~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~ 167 (510)
T PRK00750 91 LGKPLTEIPDPFGCHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEIMEILLPYLGEER 167 (510)
T ss_pred cCcccccCCCCCCCchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCcc
Confidence 3344333 334446899754 66665544332333222 2 33333344443332 210
Q ss_pred -C-----------------------Cccccccchh----------hhhcCC--CCCCCcC-cccccCCCcceeeccccCc
Q 015880 199 -G-----------------------EDHIGKVSFP----------PVQAVP--SFPSSFP-HLFSGKDHLRCLIPCAIDQ 241 (399)
Q Consensus 199 -~-----------------------~~~~g~~~YP----------llQaad--~~~~~~~-di~~~~~~~~~~v~~G~DQ 241 (399)
+ ...-|.+.|- +..+.- -|..++| -+..++.+ +.|.|.||
T Consensus 168 ~~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g~~KL~Wr~dW~~rW~~l~Vd---~e~~GkDh 244 (510)
T PRK00750 168 QATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGGHGKLQWKVDWPMRWAALGVD---FEPFGKDH 244 (510)
T ss_pred CCCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCCCcccCCCCCcHHHHHHcCCC---EEeeCccc
Confidence 0 0011233341 111100 0000011 11123443 67999999
Q ss_pred hh-HHHHHHHHHH-HhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 242 DP-YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 242 d~-~~~l~rdla~-r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
.. ....++.+++ .+|.+.|..++..++..-+ |+|||||.+| .|.+.|
T Consensus 245 ~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~--G~KMSKSkGN-~i~~~d 293 (510)
T PRK00750 245 ASASYDTSKKIAREILGGEPPEPFVYELFLDKK--GEKISKSKGN-VITIED 293 (510)
T ss_pred CcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCC--CCcccccCCC-ccCHHH
Confidence 99 9999999999 8999888877777776654 4899999988 888766
No 30
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.86 E-value=4.7e-08 Score=98.19 Aligned_cols=207 Identities=20% Similarity=0.331 Sum_probs=112.0
Q ss_pred HHHHHHHHhCCceeEEEecCCCCCCccccchHHHH----hHHhHHhhCCCeE-EEEecCccccccc-------------C
Q 015880 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPL-VIQLTDDEKCMWK-------------N 135 (399)
Q Consensus 74 ~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v-~I~I~D~~a~~~~-------------~ 135 (399)
++|++....+.++.+=||+-||| .+||||+...+ +.+++... |..+ +|..+|.+.-+.+ .
T Consensus 9 ~~~~~~~~~~~~~~v~tgi~psG-~~HIG~~~e~i~~D~i~R~lr~~-G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G 86 (353)
T cd00674 9 EKIIEERKGKEKYVVASGISPSG-HIHIGNFREVITADLVARALRDL-GFEVRLIYSWDDYDRLRKVPPNVPESYEQYIG 86 (353)
T ss_pred HHHHHhccCCCeEEEecCCCCCC-CcccCccHHHHHHHHHHHHHHHc-CCCEEEEEEEcCCCcccccccchhhHHHHhcC
Confidence 33444333345788899999998 89999977643 33345544 5544 5557888832211 0
Q ss_pred CC-----------HHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCccchHH-HHHH-HHhhcCHHHHHHhh-CC--CC
Q 015880 136 LS-----------VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYK-NMVK-VAKCVTYNKVVGIF-GF--TG 199 (399)
Q Consensus 136 ~~-----------~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~-~~~~-l~~~~t~~~~~~~~-g~--~~ 199 (399)
.+ .+-+.++.....+.+-.+|++.+ ++++++...+--|. .+.. |.+.=.+.++...+ |. .+
T Consensus 87 ~pi~~ip~p~g~~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~ 163 (353)
T cd00674 87 MPLSSVPDPFGCCESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQE 163 (353)
T ss_pred ccchhchhhcCCCHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCC
Confidence 11 12233333444455557899764 55665544332332 2222 44444444444332 11 00
Q ss_pred C--------ccc--------------cccchhhhhc----CCC--------CCCCcC-cccccCCCcceeeccccCchhH
Q 015880 200 E--------DHI--------------GKVSFPPVQA----VPS--------FPSSFP-HLFSGKDHLRCLIPCAIDQDPY 244 (399)
Q Consensus 200 ~--------~~~--------------g~~~YPllQa----ad~--------~~~~~~-di~~~~~~~~~~v~~G~DQd~~ 244 (399)
+ .+. +.+.|-+=-+ +|. |..++| .+..++.| .-+.|.||..+
T Consensus 164 ~~~P~~p~c~~cg~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~rW~~l~Vd---~E~~GkDh~~~ 240 (353)
T cd00674 164 TWYPFMPYCEKCGKDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPMRWAILGVD---FEPFGKDHASA 240 (353)
T ss_pred CceeeeeecCCcCcceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchhhhhhcCCC---EEeeCcccccc
Confidence 0 011 2233321000 000 000111 11223443 56999999888
Q ss_pred ---HHHHHHHHH-HhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 245 ---FRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 245 ---~~l~rdla~-r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...+.+++ .+|.+.|..+..-++- +.| +.|||||.+| .|.+.|
T Consensus 241 ggs~~~~~~i~~~ilg~~~P~~~~ye~V~-l~g-g~KMSKSkGn-vI~~~d 288 (353)
T cd00674 241 GGSYDTGKEIAREIFGGEPPVPVMYEFIG-LKG-GGKMSSSKGN-VITPSD 288 (353)
T ss_pred ccHHHHHHHHHHHHhCCCCCeEEEeeeEE-eCC-CCccCCCCCC-cCCHHH
Confidence 999999999 8998888665555543 554 3699999988 888776
No 31
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.82 E-value=2.9e-08 Score=94.05 Aligned_cols=152 Identities=15% Similarity=0.204 Sum_probs=103.1
Q ss_pred CCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 015880 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (399)
.||| .|||||+..++ .+| +.+..|..+++-|=|.-. ..+. ..+...+.+++..+|++.+.- ++.||+-.
T Consensus 9 sPtG-~lHlG~~r~al-~n~l~Ar~~~G~~iLRieDtD~----~R~~---~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~ 78 (230)
T cd00418 9 SPTG-YLHIGHARTAL-FNFAFARKYGGKFILRIEDTDP----ERSR---PEYVESILEDLKWLGLDWDEG-PYRQSDRF 78 (230)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCeEEEEeCcCCC----CCCC---hHHHHHHHHHHHHcCCCCCCC-eeehhcCH
Confidence 4788 79999999995 677 445567777776655321 1122 233446667777899998754 56677654
Q ss_pred ccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHH
Q 015880 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 251 (399)
Q Consensus 172 ~~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdl 251 (399)
..|+.-+-++.+. + |..+|-+--+.| |.+.. . +.|..|.|+...-..-+.+
T Consensus 79 -~~y~~~~~~L~~~--------------g---g~p~Y~la~vvD-------D~~~g-I---ThViRG~D~l~st~~q~~l 129 (230)
T cd00418 79 -DLYRAYAEELIKK--------------G---GYPLYNFVHPVD-------DALMG-I---THVLRGEDHLDNTPIQDWL 129 (230)
T ss_pred -HHHHHHHHHHHHc--------------C---CCcccccccccc-------ccccC-C---CEEEECHhhhhchHHHHHH
Confidence 2333322222211 1 555666666665 65432 2 4789999988887778999
Q ss_pred HHHhCCCCcceeecccccCCCCCCCCCCCCCCCC
Q 015880 252 APRIGYHKPALIESSFFPALQGETGKMSASDPNS 285 (399)
Q Consensus 252 a~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~ns 285 (399)
++.+|.++|...|.+++...+| +||||+.++.
T Consensus 130 ~~~Lg~~~P~~~H~pll~~~~g--~KLSKr~~~~ 161 (230)
T cd00418 130 YEALGWEPPRFYHFPRLLLEDG--TKLSKRKLNT 161 (230)
T ss_pred HHHcCCCCCeEEEeeeeeCCCC--CCccCcCCCc
Confidence 9999999999999998888875 8999998763
No 32
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.39 E-value=3.4e-06 Score=88.83 Aligned_cols=198 Identities=16% Similarity=0.225 Sum_probs=104.1
Q ss_pred CceeEEEecCCCCCCccccchHHHH----hHHhHHhhCCCeEEEEecCccccccc---CCC-----------------HH
Q 015880 84 EKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDEKCMWK---NLS-----------------VE 139 (399)
Q Consensus 84 ~~~~iytG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~I~D~~a~~~~---~~~-----------------~e 139 (399)
+++.+=||+.||| .+||||+.-.+ +.+++...+.-..+|..+|++.-+.+ .++ ..
T Consensus 18 ~~~~~~tg~~psG-~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g 96 (515)
T TIGR00467 18 NLYTVASGITPSG-HIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEG 96 (515)
T ss_pred CeEEEecCCCCCC-CccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCC
Confidence 4789999999998 89999977653 44456665444445667888822211 011 00
Q ss_pred HHHHHHHH----HHHHHHHcCCCCCceEEEeccccCccchHHHHHH--HHhhcCHHHHHHhh-CC--CC--------Ccc
Q 015880 140 ESQRLARE----NAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF-GF--TG--------EDH 202 (399)
Q Consensus 140 ~i~~~~~~----~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~--l~~~~t~~~~~~~~-g~--~~--------~~~ 202 (399)
.-..++.. ..+.+-.+|++ ..++++++....-.|...++ |.+.-.+.++...+ |. .+ ..+
T Consensus 97 ~~~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~~~~~~~~P~~pic~~ 173 (515)
T TIGR00467 97 CKTSYAEHFLIPFLESLPVLGIN---PEFIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTSKLEENWYPISVFCEN 173 (515)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCe---EEEEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCCccCCCceeeeeecCC
Confidence 01233333 33444468985 46777777654434443333 44444444444332 21 11 123
Q ss_pred ccccchhhhhcCCCCC-------CCc---Cccc-----------------ccCCCcceeeccccCchhHH---HHHHHHH
Q 015880 203 IGKVSFPPVQAVPSFP-------SSF---PHLF-----------------SGKDHLRCLIPCAIDQDPYF---RMTRDVA 252 (399)
Q Consensus 203 ~g~~~YPllQaad~~~-------~~~---~di~-----------------~~~~~~~~~v~~G~DQd~~~---~l~rdla 252 (399)
.|.+..|+. .+|.=. +.. -++. .++. ..-|.|.|+..-+ ....++|
T Consensus 174 cGrv~~~~~-~~~~~~~v~Y~c~cG~~g~~~~~~g~~KL~WkvdW~~RW~~lgV---~~Ep~GkDH~~~ggsy~~~~~ia 249 (515)
T TIGR00467 174 CGRDTTTVN-NYDNEYSIEYSCECGNQESVDIYTGAIKLPWRVDWPARWKIEKV---TFEPAGKDHAAAGGSYDTGVNIA 249 (515)
T ss_pred cCccCceEE-EecCCceEEEEcCCCCEEEEeecCCCcccCCCCCcHhhHhhhCc---ccccCCCCccCccCCchhHHHHH
Confidence 455555555 333110 000 0111 1222 2357788865433 3445666
Q ss_pred H-HhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 253 P-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 253 ~-r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+ -+|...|..+..-++- |.|.|+|||||.+| .|.+.|
T Consensus 250 ~~~l~~~~P~~~~ye~v~-L~~~g~KMSKS~Gn-~itl~d 287 (515)
T TIGR00467 250 KEIFQYSPPVTVQYEWIS-LKGKGGKMSSSKGD-VISVKD 287 (515)
T ss_pred HHHhCCCCCcCcEEEEEE-EcCCCccccCCCCC-CccHHH
Confidence 5 4766666533322222 66667899999998 777655
No 33
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.74 E-value=0.00013 Score=73.21 Aligned_cols=205 Identities=19% Similarity=0.282 Sum_probs=80.9
Q ss_pred CCceeEEEecCCCCCCccccchHHHH----hHHhHHhhCCCeEEEEecCccccc----------------ccCCC-----
Q 015880 83 GEKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDEKCM----------------WKNLS----- 137 (399)
Q Consensus 83 ~~~~~iytG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~I~D~~a~~----------------~~~~~----- 137 (399)
+.+..+-+|+.||| .+||||+--++ ..+-|++.+.-.-.|..+|+---+ ..+++
T Consensus 22 ~~~~v~~sG~sPSG-~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP 100 (360)
T PF01921_consen 22 KEPYVFASGISPSG-LPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDP 100 (360)
T ss_dssp -SEEEEEEEE--SS----HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-T
T ss_pred CccEEEecCCCCCC-CcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCC
Confidence 46889999999998 89999965543 344477764443355566654222 21111
Q ss_pred HHHHHHHHHHHHHH----HHHcCCCCCceEEEeccccCccchHHHHHH--HHhhcCHHHHHHhh----------------
Q 015880 138 VEESQRLARENAKD----IIACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF---------------- 195 (399)
Q Consensus 138 ~e~i~~~~~~~~~~----ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~--l~~~~t~~~~~~~~---------------- 195 (399)
...-..++..+.+. +-.+|+++ .++++++....-.|...++ |.+.-.+.+++..+
T Consensus 101 ~G~~~SyaeH~~~~~~~~L~~~gie~---e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~~~~~y~Pf~piC 177 (360)
T PF01921_consen 101 FGCHESYAEHFNAPFEEFLDEFGIEY---EFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRERPETYSPFLPIC 177 (360)
T ss_dssp TSSSSCHHHHHHHHHHHHHHTTT------EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT--TT--SEEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHHcCCce---EEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcCCCCCeeeeeeec
Confidence 11112234444433 33579865 5777777654434443332 44444444443332
Q ss_pred ---CCCC-----Cc--cccccchhhhhc-----CCCCC--------CCcC-cccccCCCcceeeccccCchh---HHHHH
Q 015880 196 ---GFTG-----ED--HIGKVSFPPVQA-----VPSFP--------SSFP-HLFSGKDHLRCLIPCAIDQDP---YFRMT 248 (399)
Q Consensus 196 ---g~~~-----~~--~~g~~~YPllQa-----ad~~~--------~~~~-di~~~~~~~~~~v~~G~DQd~---~~~l~ 248 (399)
|.-. +. .-+.+.|-+--+ +|..- .++| -+..++.+ .-|.|.|+-. -...+
T Consensus 178 ~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~gKL~WkvDW~mRW~~lgVd---fEp~GKDH~~~GGS~d~~ 254 (360)
T PF01921_consen 178 EKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGNGKLQWKVDWPMRWAALGVD---FEPFGKDHASPGGSYDTS 254 (360)
T ss_dssp TTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT-EEE-HHHHHHHHHHHTT-S---EEEEEHHHHCTTSHHHHH
T ss_pred cccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCcccccCCCcChhhhhhcCce---eccCCCccCCCCCChhhH
Confidence 1100 01 134444433000 10000 0000 01112332 5688888777 77888
Q ss_pred HHHHHH-hCCCCcceeecccccCCCCCCCCCCCCCCCCceeecC-----cHHHHH
Q 015880 249 RDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK 297 (399)
Q Consensus 249 rdla~r-~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D-----~~~~i~ 297 (399)
.+||++ +|.+.|..+.--+ -++.| ++|||||.+| .|-+.| +|+.++
T Consensus 255 ~~I~~~i~g~~pP~~~~YE~-~~~~g-~~kmSsSkG~-~~t~~e~L~~~~PE~lr 306 (360)
T PF01921_consen 255 KRIAREILGYEPPVPFPYEF-FLDKG-GGKMSSSKGN-GITPEEWLEYAPPESLR 306 (360)
T ss_dssp HHHHHHCC-----EEEEE---EEES----------------HHHHHTTS-HHHHH
T ss_pred HHHHHHHhCCCCCCCCCeeE-EEeCC-CcccccCCCC-ccCHHHHHHhcCHHHHH
Confidence 999955 7887776543222 23445 3699999999 776655 455544
No 34
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.71 E-value=0.00023 Score=67.98 Aligned_cols=165 Identities=17% Similarity=0.170 Sum_probs=95.7
Q ss_pred EecCCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecc
Q 015880 90 TGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 168 (399)
Q Consensus 90 tG~~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s 168 (399)
+|-.||| .|||||+..++ ..| +.+..+..+++=|-|...-. ....++ ....+.+++..+|++++ .++.||
T Consensus 6 faPsPtG-~lHiG~~rtal-~~~l~Ar~~~G~~ilRieDtD~~r--~~~~~~---~~~~i~~dL~wLGl~~d--~~~~qS 76 (240)
T cd09287 6 FAPNPNG-PLHLGHARAAI-LNGEYAKMYGGKFILRFDDTDPRT--KRPDPE---AYDMIPEDLEWLGVKWD--EVVIAS 76 (240)
T ss_pred CCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEeeCcCCCCc--ccchHH---HHHHHHHHHHHcCCCCC--Cccchh
Confidence 4567888 79999999995 566 55667888888787754211 002222 22346677888999987 467787
Q ss_pred ccCccchHHHHHHH-HhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHH
Q 015880 169 DYVGGAFYKNMVKV-AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRM 247 (399)
Q Consensus 169 ~~~~~~~~~~~~~l-~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l 247 (399)
+..+ .|+.-+-++ .+-..+. ... ..+.- +.||..|-|-+. .|.+.. . +.|..|.|-...-..
T Consensus 77 ~r~~-~y~~~~~~Li~~G~aY~--~~~---~~~~~---~i~ptY~la~vV----DD~~~g-I---ThViRg~d~~~~t~~ 139 (240)
T cd09287 77 DRIE-LYYEYARKLIEMGGAYV--HPR---TGSKY---RVWPTLNFAVAV----DDHLLG-V---THVLRGKDHIDNTEK 139 (240)
T ss_pred ccHH-HHHHHHHHHHHcCCccc--Ccc---cCCcE---EEEEccccceee----eccccC-C---CeEEechhhhhCCHH
Confidence 7542 222222222 1111111 000 01111 234555544211 143322 2 467899886555445
Q ss_pred HHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCC
Q 015880 248 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 283 (399)
Q Consensus 248 ~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~ 283 (399)
-+-|.+.+|.+.|...|.+++- +.|+||||...
T Consensus 140 q~~l~~~Lg~~~P~~~H~pll~---~~~~kLSKR~~ 172 (240)
T cd09287 140 QRYIYEYFGWEYPETIHWGRLK---IEGGKLSTSKI 172 (240)
T ss_pred HHHHHHHcCCCCCcEEeeeeec---CCCCeeccccc
Confidence 5778888999999888877764 23589999964
No 35
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.65 E-value=0.0021 Score=67.44 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=48.6
Q ss_pred eeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecC------cHHHHHHHh
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKI 300 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D------~~~~i~~KI 300 (399)
.|..|.||..+...-..+.+.+|.+.|...|.+++-.++| +||||..+ ++.|.+ .|+.+.+-+
T Consensus 200 hvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g--~kLSKR~g--~~~l~~l~~~g~~p~a~~~~~ 268 (470)
T TIGR00464 200 HVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDG--KKLSKRDG--ATSIMQFKEQGYLPEALINYL 268 (470)
T ss_pred EEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCC--ccccccCC--CccHHHHHHCCCCHHHHHHHH
Confidence 4559999999888888999999998898888888777776 89999976 555543 455555444
No 36
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.63 E-value=0.0022 Score=67.62 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=75.1
Q ss_pred eeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecC------cHHHHHHHhcccccCC
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINKYAFSG 307 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D------~~~~i~~KI~kyA~t~ 307 (399)
.|..|.||..+...-+-+.+.+|...|...|.++|.+++| +||||..+...| .+ .|+.|.+-+.....+.
T Consensus 199 hVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g--~KLSKR~g~~~i--~~~r~~G~~Peai~n~la~LG~s~ 274 (513)
T PRK14895 199 HIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADG--AKLSKRHGALGI--EAYKDMGYLPESLCNYLLRLGWSH 274 (513)
T ss_pred EEEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCC--CccccccCchhH--HHHHHCCCCHHHHHHHHHHhCCCC
Confidence 4458988888877778888999998898889999888886 899999775333 22 4666655553211221
Q ss_pred CchhhHHHhhcCCCCcchHHHHHHHhcc----------CChHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 015880 308 GQESVELHRKLGANLEVDIPVKYLSFFL----------EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 367 (399)
Q Consensus 308 ~~~t~e~~~~~g~~p~~~v~~~~l~~f~----------~~~~eleei~~~~~~G~~~~~~~K~~la~~i~ 367 (399)
+ +.++...-++...|. -|.+++..+-..|-.. +...++...+...+.
T Consensus 275 ~------------~~e~~~~~el~~~F~~~~v~~s~~~FD~~KL~wlN~~yi~~-l~~~el~~~~~~~l~ 331 (513)
T PRK14895 275 G------------DDEIISMTQAIDWFNLDSLGKSPSKLDFAKMNSLNAHYLRM-LDNDSLTSKTVEILE 331 (513)
T ss_pred C------------CcCCCCHHHHHhhCCHHhCcCCcCcCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH
Confidence 1 111222223343331 1678889998888763 666666665555543
No 37
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00091 Score=69.54 Aligned_cols=106 Identities=20% Similarity=0.327 Sum_probs=62.1
Q ss_pred CceeEEEecCCCCCCccccchHHHH----hHHhHHhhCCCeEEEEecCccccccc---CCC-HHHH--------------
Q 015880 84 EKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDEKCMWK---NLS-VEES-------------- 141 (399)
Q Consensus 84 ~~~~iytG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~I~D~~a~~~~---~~~-~e~i-------------- 141 (399)
....+=||+.||| .+||||+-=.+ ..+-|.+.++-.-+|.++|+..-+.+ +++ .+..
T Consensus 19 ~~~~v~tGisPSG-~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATGISPSG-LIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecCcCCCC-CcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 5678999999998 89999965432 33447676554446678998755533 233 1233
Q ss_pred ----HHHHHHHHHHHH----HcCCCCCceEEEeccccCccchHHHHHH--HHhhcCHHHHHH
Q 015880 142 ----QRLARENAKDII----ACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVG 193 (399)
Q Consensus 142 ----~~~~~~~~~~il----A~G~dp~kt~i~~~s~~~~~~~~~~~~~--l~~~~t~~~~~~ 193 (399)
..++..+.+.+. -+|+++ .++++++....-.|...++ +.+.--..++++
T Consensus 98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~ 156 (521)
T COG1384 98 FGCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATELYKSGLYDEAIRIALERRDEIMEILN 156 (521)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCce---EEEEhHHhhhcccHHHHHHHHHhhHHHHHHHHH
Confidence 234445554444 478864 5777776555445555444 334333434333
No 38
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.49 E-value=0.0034 Score=65.95 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=43.6
Q ss_pred eeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
.|..|.||..+.-.-+.+.+.+|.+.|...|.+++..++| +||||-.+ ++.+.+
T Consensus 210 hvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g--~klSKR~g--~~~l~~ 263 (476)
T PRK01406 210 HVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDG--KKLSKRHG--ATSVEQ 263 (476)
T ss_pred EEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccCcCC--ccCHHH
Confidence 4559999888887788899999998898888888777775 89999976 555543
No 39
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.49 E-value=0.00042 Score=73.29 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=43.8
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCcc---eeecccccCCCCCCCCCCCCCCCCceeecCcHHH
Q 015880 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPA---LIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (399)
Q Consensus 233 ~~v~~G~DQd~~~~l~rdla~r~~~~kp~---~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~ 295 (399)
++-.+|.||..|+.-..-+++.+|..++. .+|..+-.-+.+.|+|||||.|| .|++.|=-++
T Consensus 275 ~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn-~i~l~dll~~ 339 (507)
T PRK01611 275 VIYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGN-VVTLDDLLDE 339 (507)
T ss_pred EEEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCc-eeEHHHHHHH
Confidence 44489999999999999999999986432 23322211122336899999999 9998874444
No 40
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.46 E-value=0.00097 Score=62.74 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=44.1
Q ss_pred CCceeEEEecCCCCCCccccchHHHH---hHHhHHhhCCCeEEEEe-cCccc--ccc---c-CCCHHH-HHHHHHHHHHH
Q 015880 83 GEKFYLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEK--CMW---K-NLSVEE-SQRLARENAKD 151 (399)
Q Consensus 83 ~~~~~iytG~~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I-~D~~a--~~~---~-~~~~e~-i~~~~~~~~~~ 151 (399)
++.-...||-=|-+ .+||||+-+++ .+.++.+..|..|.... .|++. ... + ..++.+ +..+.....++
T Consensus 19 ~~~~~y~~gpt~y~-~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~ 97 (213)
T cd00672 19 GLVTMYVCGPTVYD-YAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFED 97 (213)
T ss_pred CCceEEEeCCccCC-CcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34445557777776 79999976654 33333344466665543 23331 221 1 356655 44455667777
Q ss_pred HHHcCCCC
Q 015880 152 IIACGFDV 159 (399)
Q Consensus 152 ilA~G~dp 159 (399)
+.++|+.+
T Consensus 98 ~~~l~i~~ 105 (213)
T cd00672 98 MKALNVLP 105 (213)
T ss_pred HHHcCCCC
Confidence 88899976
No 41
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.39 E-value=0.0019 Score=68.76 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=54.2
Q ss_pred CceeEEEecCCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 015880 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (399)
Q Consensus 84 ~~~~iytG~~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt 162 (399)
..+....+=.||| .|||||+..++ ++| +.+.+|..+++-|-|.-..+.| . ...+...+..++..+|++++.
T Consensus 100 g~V~tRFaPsPtG-~LHIGharaal-ln~~~Ar~~~G~~iLRidDTDpk~~R--~---~~e~~~~I~edL~wLGl~wD~- 171 (567)
T PRK04156 100 GKVVMRFAPNPSG-PLHLGHARAAI-LNDEYAKMYGGKFILRFEDTDPRTKR--P---DPEAYDMILEDLKWLGVKWDE- 171 (567)
T ss_pred CeEEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEeEccCCCCccc--c---hHHHHHHHHHHHHHcCCCCCC-
Confidence 3477788888888 79999999995 666 5566788888877765321111 1 222334566777789999874
Q ss_pred EEEeccccC
Q 015880 163 FIFSDFDYV 171 (399)
Q Consensus 163 ~i~~~s~~~ 171 (399)
++.||+.+
T Consensus 172 -~~~qSdr~ 179 (567)
T PRK04156 172 -VVIQSDRL 179 (567)
T ss_pred -ccCcccCH
Confidence 57788765
No 42
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.38 E-value=0.001 Score=63.42 Aligned_cols=158 Identities=14% Similarity=0.151 Sum_probs=86.9
Q ss_pred CCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 015880 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (399)
.||| .|||||+..++ .+| +.+..|..+++-|=|.-. .. ........+.+++..+|++++ .++.||+-.
T Consensus 9 sPtG-~lHlG~~~~al-~~~l~Ar~~~G~~iLRieDtD~----~R---~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~ 77 (238)
T cd00807 9 EPNG-YLHIGHAKAIL-LNFGYAKKYGGRCNLRFDDTNP----EK---EEEEYVDSIKEDVKWLGIKPY--KVTYASDYF 77 (238)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEecCCCC----cc---cchHHHHHHHHHHHHcCCCCC--CceecccCH
Confidence 4778 79999999995 666 445567777776644321 11 122334456677778999988 466787654
Q ss_pred ccchHHHHH-HH---HhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHH
Q 015880 172 GGAFYKNMV-KV---AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRM 247 (399)
Q Consensus 172 ~~~~~~~~~-~l---~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l 247 (399)
..|..++ ++ ++... . . ..+.. -..||..|-|-. ..|.+.. . +.|..|.|....-..
T Consensus 78 --~~Y~~~~~~L~~~g~aY~--~--~----~~~~~--~~i~ptY~lA~v----VDD~~~g-I---ThVvRG~D~l~~t~~ 137 (238)
T cd00807 78 --DQLYEYAEQLIKKGKAYV--H--H----RTGDK--WCIYPTYDFAHP----IVDSIEG-I---THSLCTLEFEDRRPS 137 (238)
T ss_pred --HHHHHHHHHHHHcCCeec--C--C----CCCCC--EEEEeccccceE----eeccccC-C---CeEEechhhhcCCHH
Confidence 2333322 22 21111 0 0 01111 112444444311 1154332 2 467888885544334
Q ss_pred HHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCC
Q 015880 248 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 284 (399)
Q Consensus 248 ~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~n 284 (399)
-.-|.+.+|.+.|..++-.-+ ..+ |.|+||....
T Consensus 138 Q~~l~~aLg~~~P~~~~~~hl-n~~--g~kLSKR~~~ 171 (238)
T cd00807 138 YYWLCDALRLYRPHQWEFSRL-NLT--YTVMSKRKLL 171 (238)
T ss_pred HHHHHHHcCCCCCceeEEEEE-CCC--CCCccCcCch
Confidence 466778899988864421122 444 5899999753
No 43
>PLN02627 glutamyl-tRNA synthetase
Probab=97.34 E-value=0.0071 Score=63.98 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=41.1
Q ss_pred eeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecC------cHHHHHHHh
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKI 300 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D------~~~~i~~KI 300 (399)
.|.-|.|.-..--.-.-|.+-||.+.|...|.++|.+-+| +||||.++. +.+.+ .|+.|.+=+
T Consensus 252 HViRG~D~l~nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g--~KLSKR~~~--~~v~~~r~~G~~PeAi~nyl 320 (535)
T PLN02627 252 HVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDR--SKLSKRHGA--TSVGQFREMGYLPDAMVNYL 320 (535)
T ss_pred EEEechhhhcChHHHHHHHHHcCCCCCeEEEccceeCCCC--CccccccCC--ccHHHHHHCCCCHHHHHHHH
Confidence 4556666333322225566779999999889988888775 899999764 33322 566665544
No 44
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.31 E-value=0.0031 Score=62.28 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=46.2
Q ss_pred CCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 015880 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (399)
.||| .|||||+..++ .+| +.++.|..+++-|-|.-. .. ....+...+++++..+|++.+.. ++.||+-.
T Consensus 13 SPTG-~LHlG~~rtAL-~n~l~Ar~~~G~~iLRiEDtD~----~R---~~~~~~~~I~~dL~wlGl~wDe~-~~~QS~r~ 82 (299)
T PRK05710 13 SPSG-PLHFGSLVAAL-GSWLDARAHGGRWLLRIEDIDP----PR---EVPGAADAILADLEWLGLHWDGP-VLYQSQRH 82 (299)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCC----Cc---cchHHHHHHHHHHHHCCCCCCCC-ceEeeccH
Confidence 4667 79999999995 677 445567788877766421 11 12234456778888999998854 45577654
No 45
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0052 Score=64.25 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=37.0
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCC
Q 015880 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 284 (399)
Q Consensus 233 ~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~n 284 (399)
+.|..|.|+-.+-..-+-|.+-||.+.|...|.++|..=+ |+||||+.+-
T Consensus 208 THviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~~~--g~kLSKr~~~ 257 (472)
T COG0008 208 THVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNED--GKKLSKRKGA 257 (472)
T ss_pred ceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeecCC--CCeecCccCc
Confidence 4567777755544444667788999999999988888833 5899999773
No 46
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.12 E-value=0.0046 Score=64.74 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=45.5
Q ss_pred ceeEE-EecCCCCCCccccchHHHH---hHHhHHhhCCCeEEEE--ecCcc-ccccc----CCCHHHH-HHHHHHHHHHH
Q 015880 85 KFYLY-TGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAKDI 152 (399)
Q Consensus 85 ~~~iy-tG~~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i-~~~~~~~~~~i 152 (399)
.+.+| ||--|.+ .+||||+.+++ ++.++++..|..|... ++|.. +...+ ..++.++ ..+.....+++
T Consensus 23 ~v~~yvcgPtvy~-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~ 101 (463)
T PRK00260 23 KVKMYVCGPTVYD-YAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDM 101 (463)
T ss_pred cceEEEeCCccCC-CcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34566 8988887 89999977653 3333344456666554 33433 22221 3566554 44556777788
Q ss_pred HHcCC-CCC
Q 015880 153 IACGF-DVT 160 (399)
Q Consensus 153 lA~G~-dp~ 160 (399)
.++|+ .|+
T Consensus 102 ~~Lgi~~~d 110 (463)
T PRK00260 102 DALNVLPPD 110 (463)
T ss_pred HHcCCCCCC
Confidence 88998 443
No 47
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.03 E-value=0.044 Score=56.87 Aligned_cols=68 Identities=18% Similarity=0.342 Sum_probs=45.0
Q ss_pred CCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 015880 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (399)
-||| .|||||+..++ .+| +.+..|..+++-|=|.-. ..+.+ .....+..++.-+|++++. .+.||+-.
T Consensus 7 SPTG-~LHiG~artAL-~n~l~Ar~~gG~fiLRiEDTD~----~R~~~---e~~~~I~~~L~WlGl~wDe--~y~QSeR~ 75 (433)
T PRK12410 7 SPTG-DMHIGNLRAAI-FNYIVAKQQNEDFLIRIEDTDK----ERNIE---GKDKEILEILNLFGISWDK--LVYQSENL 75 (433)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCEEEEEeCcCCC----CcCCh---HHHHHHHHHHHHcCCCCCC--CeehhccH
Confidence 4788 79999999995 677 456678888887755321 11222 2233455666678999885 57788764
No 48
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=96.82 E-value=0.013 Score=57.09 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=45.0
Q ss_pred CCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 015880 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (399)
.||| .|||||+..++ .+| +.+..|..+++-|=|.-. ....+ .....+..++.-+|++++.. ++.||+..
T Consensus 8 SPtG-~lHiG~~rtAL-~n~l~Ar~~gG~~iLRiEDtD~----~R~~~---~~~~~I~~dL~wLGl~wDe~-~~~QS~r~ 77 (272)
T TIGR03838 8 SPSG-PLHFGSLVAAL-GSYLDARAHGGRWLVRIEDLDP----PREVP---GAADDILRTLEAYGLHWDGE-VVYQSQRH 77 (272)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEeCcCCC----CCCCh---HHHHHHHHHHHHcCCCCCCC-eeeeeCCH
Confidence 4788 79999999995 677 455667888887755321 11222 23335556666789998754 45677765
No 49
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=96.78 E-value=0.0054 Score=57.43 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=34.1
Q ss_pred ccccCchhHHHHHHHHHHHhCCC-Ccceee--cccccCCCCCCCCCCCCCC
Q 015880 236 PCAIDQDPYFRMTRDVAPRIGYH-KPALIE--SSFFPALQGETGKMSASDP 283 (399)
Q Consensus 236 ~~G~DQd~~~~l~rdla~r~~~~-kp~~l~--~~~lp~L~g~g~KMSKS~~ 283 (399)
.+|.||..|+.-.+.+++.+|.. +|...| ..++.+-+ |+||||..+
T Consensus 164 v~g~~~~~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~--~~kmS~R~G 212 (212)
T cd00671 164 VVGADHHGHFKRLFAALELLGYDEAKKLEHLLYGMVNLPK--EGKMSTRAG 212 (212)
T ss_pred EECCCHHHHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCC--CCCCCCCCC
Confidence 79999999999999999999985 333333 24554433 489999754
No 50
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=96.67 E-value=0.015 Score=61.47 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=46.6
Q ss_pred EEEecC--CCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015880 88 LYTGRG--PSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (399)
Q Consensus 88 iytG~~--PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (399)
+.|=|- ||| .|||||+-.++ ++| +.+.+|..+++-|=|.-. .. ....+...+..++.-+|++++. +
T Consensus 12 v~tRFAPsPtG-~LHiGharaAl-ln~l~Ar~~gG~~iLRiEDTDp----~R---~~~e~~~~I~~dL~WLGl~wD~--~ 80 (523)
T PLN03233 12 IVTRFPPEPSG-YLHIGHAKAAL-LNDYYARRYKGRLILRFDDTNP----SK---EKAEFEESIIEDLGKIEIKPDS--V 80 (523)
T ss_pred EEEeeCCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEECCCCC----Cc---cchHHHHHHHHHHHHhCCCCCC--C
Confidence 444444 567 89999999995 677 455667777765533211 11 1223444566777778999874 5
Q ss_pred EeccccC
Q 015880 165 FSDFDYV 171 (399)
Q Consensus 165 ~~~s~~~ 171 (399)
+.||+..
T Consensus 81 ~~qSdr~ 87 (523)
T PLN03233 81 SFTSDYF 87 (523)
T ss_pred ccccccH
Confidence 6788775
No 51
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.012 Score=61.00 Aligned_cols=72 Identities=26% Similarity=0.345 Sum_probs=46.3
Q ss_pred eeEEEecCCC-CCCccccchHH---HH-hHHhHHhhCC-CeEEEEecCcc-ccccc----CCCHHHHHH-HHHHHHHHHH
Q 015880 86 FYLYTGRGPS-SEALHLGHLVP---FM-FTKYLQDAFK-VPLVIQLTDDE-KCMWK----NLSVEESQR-LARENAKDII 153 (399)
Q Consensus 86 ~~iytG~~PT-g~slHlGhlv~---~~-~~~~lQ~~~~-~~v~I~I~D~~-a~~~~----~~~~e~i~~-~~~~~~~~il 153 (399)
+.+|+ -+|| -+..||||.-+ +. +.+||+..+. +.++-=|+|.. |.+.| ..++.++.+ +..++.+++-
T Consensus 23 V~mYv-CGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~ 101 (464)
T COG0215 23 VKMYV-CGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMD 101 (464)
T ss_pred EEEEe-cCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 55553 3465 35899999555 43 5566777655 44333489987 66654 257776544 5567778888
Q ss_pred HcCCC
Q 015880 154 ACGFD 158 (399)
Q Consensus 154 A~G~d 158 (399)
|+|+-
T Consensus 102 aL~v~ 106 (464)
T COG0215 102 ALNVL 106 (464)
T ss_pred HhCCC
Confidence 88873
No 52
>PLN02859 glutamine-tRNA ligase
Probab=96.59 E-value=0.086 Score=58.16 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHh-CCceeEEEecCCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHH
Q 015880 71 RDLNDILDAYEK-GEKFYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAREN 148 (399)
Q Consensus 71 ~d~~~ll~~~~~-~~~~~iytG~~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~ 148 (399)
...+.+-++++. +.+++.=..=.||| .|||||+-.++ ++| +.+.+|..+++-+=|.-- .. +...+...+
T Consensus 249 ~~~~~~~~hl~~t~g~V~tRFaPsPtG-~LHiGharaal-lN~~~Ar~~~G~~~LRieDTdp----~r---~~~e~~~~I 319 (788)
T PLN02859 249 NTKEILEKHLKATGGKVYTRFPPEPNG-YLHIGHAKAMF-VDFGLAKERGGCCYLRFDDTNP----EA---EKKEYIDHI 319 (788)
T ss_pred CcHHHHHHHHhhcCCceEEEeCCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEecCCCC----Cc---cchHHHHHH
Confidence 444444455543 33333333335667 89999999995 666 555667777765533210 01 122344455
Q ss_pred HHHHHHcCCCCCceEEEeccccC
Q 015880 149 AKDIIACGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 149 ~~~ilA~G~dp~kt~i~~~s~~~ 171 (399)
..++.-+|+++++ ++.||++.
T Consensus 320 ~edL~WLG~~~d~--~~~qSd~f 340 (788)
T PLN02859 320 EEIVEWMGWEPFK--ITYTSDYF 340 (788)
T ss_pred HHHHHHcCCCCCC--cccccHhH
Confidence 6666678999874 56677765
No 53
>PLN02907 glutamate-tRNA ligase
Probab=96.55 E-value=0.095 Score=57.82 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=46.9
Q ss_pred EEEecC--CCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015880 88 LYTGRG--PSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (399)
Q Consensus 88 iytG~~--PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (399)
+.|=|- ||| -|||||+-.++ ++| +.+.+|..+++-|=|.-. .... .++...+..++.-+|+++++ +
T Consensus 214 v~tRFaPsPtG-~LHiG~ar~al-~n~~~Ar~~~G~~iLR~eDTdp----~r~~---~e~~~~I~~dl~wLG~~~d~--~ 282 (722)
T PLN02907 214 VCTRFPPEPSG-YLHIGHAKAAL-LNQYFARRYKGKLIVRFDDTNP----SKES---DEFVENILKDIETLGIKYDA--V 282 (722)
T ss_pred eEEeeCCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEecCCCC----CcCC---hHHHHHHHHHHHHcCCCCCC--c
Confidence 455555 557 89999999995 676 566677777776543211 1111 23334556677778999875 4
Q ss_pred EeccccC
Q 015880 165 FSDFDYV 171 (399)
Q Consensus 165 ~~~s~~~ 171 (399)
+.||+..
T Consensus 283 ~~qS~r~ 289 (722)
T PLN02907 283 TYTSDYF 289 (722)
T ss_pred ccccccH
Confidence 6788776
No 54
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=96.51 E-value=0.032 Score=59.86 Aligned_cols=74 Identities=23% Similarity=0.305 Sum_probs=47.5
Q ss_pred EEEec--CCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015880 88 LYTGR--GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (399)
Q Consensus 88 iytG~--~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (399)
+.|=| .||| .|||||+..++ ++| +.+.+|..+++-|=|.-. .. +...+...++.++..+|++++.- +
T Consensus 53 v~tRFAPsPtG-yLHIGharaAl-lN~l~Ar~~gG~~iLRiEDTDp----~R---~~~e~~d~IleDL~WLGl~wDe~-~ 122 (601)
T PTZ00402 53 VVTRFPPEASG-FLHIGHAKAAL-INSMLADKYKGKLVFRFDDTNP----SK---EKEHFEQAILDDLATLGVSWDVG-P 122 (601)
T ss_pred eEEeeCCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEEcCCCC----cc---cCHHHHHHHHHHHHHCCCCCCCc-e
Confidence 44444 4567 79999999995 677 556667777775543211 01 22344456677888899998753 4
Q ss_pred EeccccC
Q 015880 165 FSDFDYV 171 (399)
Q Consensus 165 ~~~s~~~ 171 (399)
+.||+..
T Consensus 123 ~~QSdr~ 129 (601)
T PTZ00402 123 TYSSDYM 129 (601)
T ss_pred eeccccH
Confidence 5677765
No 55
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=96.16 E-value=0.036 Score=58.13 Aligned_cols=76 Identities=21% Similarity=0.222 Sum_probs=44.1
Q ss_pred CCceeEEEecCCCCCCccccchHHHH----hHHhHHhhCCCeEEEE--ecCcc-ccccc----CCCHHHHH-HHHHHHHH
Q 015880 83 GEKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEESQ-RLARENAK 150 (399)
Q Consensus 83 ~~~~~iytG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i~-~~~~~~~~ 150 (399)
++.-...||-=|.+ .+||||+.+++ +.++|+. .|..|... ++|-. +...+ ..++.++. .+.....+
T Consensus 20 ~~v~~yvcgptvy~-~~HiGhar~~v~~Dvl~R~lr~-~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~ 97 (465)
T TIGR00435 20 GKVKMYVCGPTVYD-YCHIGHARTAIVFDVLRRYLRY-LGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFE 97 (465)
T ss_pred CcceEEEecCccCC-CcccccchHHHHHHHHHHHHHH-cCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34445567877777 79999977653 3444554 45555443 33322 33221 36666654 44556667
Q ss_pred HHHHcCCCCC
Q 015880 151 DIIACGFDVT 160 (399)
Q Consensus 151 ~ilA~G~dp~ 160 (399)
++.++|+.++
T Consensus 98 dl~~LgI~~d 107 (465)
T TIGR00435 98 DMKALNVLPP 107 (465)
T ss_pred HHHHhCCCCC
Confidence 7788888643
No 56
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=96.14 E-value=0.038 Score=57.51 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=43.6
Q ss_pred CCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 015880 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (399)
-||| .|||||+..++ .+| +.+..|..+++-|-|.-. ..+.+ .....+..++..+|++.+. .|.||+..
T Consensus 10 SPTG-~lHiG~artAL-~n~l~Ar~~gG~fiLRIEDTD~----~Rs~~---~~~~~I~e~L~wLGI~~De--~y~QSer~ 78 (445)
T PRK12558 10 SPTG-YLHVGNARTAL-LNWLYARKHGGKFILRIDDTDL----ERSKQ---EYADAIAEDLKWLGINWDR--TFRQSDRF 78 (445)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEeccCCc----ccchH---HHHHHHHHHHHHcCCCCCc--cccHHHHH
Confidence 4678 79999999995 677 455667888877766431 12222 2223445566678998874 46676654
No 57
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.00 E-value=0.0044 Score=63.19 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=53.1
Q ss_pred HHHHHHHHHhCCCCcceeecc---cccCCCCCCCCCCCCCC--CCceeecCcHHHHHHHhcccccCCCch
Q 015880 246 RMTRDVAPRIGYHKPALIESS---FFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQE 310 (399)
Q Consensus 246 ~l~rdla~r~~~~kp~~l~~~---~lp~L~g~g~KMSKS~~--nsaI~L~D~~~~i~~KI~kyA~t~~~~ 310 (399)
.++|++..+..+..|..++.. ..+|.++ |+|||+|.+ +++||+.|+|+++.+|+.+ +||....
T Consensus 196 dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~-~~~i~l~~~~~~~~i~~~d~~D~~~~Ki~k-~~t~~~~ 263 (377)
T TIGR00234 196 DLIRRNLPSLGFGLTVPLLTPADGEKMGKSG-GGAVSLDEGKYDFYQFWINTPDEDVKKILK-LFTFLGL 263 (377)
T ss_pred HHHHHhcCCCceeeceeeecCCCCCCccCCC-CCcccCCccHhhhhhhhcCCcHHHHHHHHH-HcCCCcH
Confidence 388888877777677666655 7889987 589999998 7899999999999999999 9998654
No 58
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=94.55 E-value=0.031 Score=55.31 Aligned_cols=55 Identities=22% Similarity=0.109 Sum_probs=35.9
Q ss_pred eeccccCch-hHHHHHHHHHHHhCCC-Ccc-eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQD-PYFRMTRDVAPRIGYH-KPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd-~~~~l~rdla~r~~~~-kp~-~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+..+|.||. +|+....-...-++.. .|. .+.+-++. +.| |+|||||.+| +|++.|
T Consensus 229 i~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~-g~KmSKS~gn-~v~~~d 286 (312)
T cd00668 229 WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVL-DEG-GQKMSKSKGN-VIDPSD 286 (312)
T ss_pred EEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEE-cCC-CccccccCCC-cCCHHH
Confidence 568999998 7766555444445543 232 22345554 333 4899999999 999865
No 59
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=93.92 E-value=0.38 Score=51.35 Aligned_cols=86 Identities=21% Similarity=0.300 Sum_probs=51.4
Q ss_pred HHHHHHhCCceeEEEecC--CCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHH
Q 015880 76 ILDAYEKGEKFYLYTGRG--PSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDI 152 (399)
Q Consensus 76 ll~~~~~~~~~~iytG~~--PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~i 152 (399)
+.+.+++|+--.+.|=|. ||| .|||||+-.++ ++| +.+..|..+++-|=|.-. .. ....+...++.++
T Consensus 18 ~~~dl~~~~~~~v~tRFaPsPtG-~LHiG~ar~al-~n~~~Ar~~~G~~iLRieDTd~----~r---~~~e~~~~I~~dL 88 (554)
T PRK05347 18 IDEDLASGKHTRVHTRFPPEPNG-YLHIGHAKSIC-LNFGLAQDYGGKCNLRFDDTNP----EK---EDQEYVDSIKEDV 88 (554)
T ss_pred HHhHHhcCCcCceEEEeCCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEECCCCC----Cc---CChHHHHHHHHHH
Confidence 344555654223555554 567 79999999995 666 556667777776543211 01 1223344556677
Q ss_pred HHcCCCCCceEEEeccccC
Q 015880 153 IACGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 153 lA~G~dp~kt~i~~~s~~~ 171 (399)
.-+|++++.- ++.||+..
T Consensus 89 ~wLGi~~d~~-~~~qS~r~ 106 (554)
T PRK05347 89 RWLGFDWSGE-LRYASDYF 106 (554)
T ss_pred HHcCCCCCCC-ceeeecCH
Confidence 7789998432 45677665
No 60
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=93.02 E-value=0.22 Score=53.26 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=48.0
Q ss_pred EEEecC--CCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015880 88 LYTGRG--PSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (399)
Q Consensus 88 iytG~~--PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (399)
+.|=|- ||| .|||||+..++ ++| +.+.+|..+++-+-|.-. ... ...+...+..++..+|++++. +
T Consensus 94 vvtRFaPsPtG-~LHiGharaal-ln~~~Ar~~~G~~iLRidDTDp----~R~---~~e~~~~I~edL~wLGi~~d~--~ 162 (560)
T TIGR00463 94 VVMRFAPNPSG-PLHIGHARAAI-LNQYFAKKYKGKLIIRFDDTDP----RRV---KPEAYDMILEDLDWLGVKGDE--V 162 (560)
T ss_pred eEEEeCCCCCC-CccHHHHHHHH-HHHHHHHhcCCEEEEEeCcCCc----ccc---cHHHHHHHHHHHHHcCCCCCc--c
Confidence 444454 557 79999999995 666 566678777776655321 111 223445667777789999873 6
Q ss_pred EeccccC
Q 015880 165 FSDFDYV 171 (399)
Q Consensus 165 ~~~s~~~ 171 (399)
+.||+.+
T Consensus 163 ~~qSd~~ 169 (560)
T TIGR00463 163 VYQSDRI 169 (560)
T ss_pred ccccccH
Confidence 7788776
No 61
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=92.90 E-value=0.61 Score=51.80 Aligned_cols=86 Identities=20% Similarity=0.331 Sum_probs=51.7
Q ss_pred HHHHHHhCCceeEEEecC--CCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHH
Q 015880 76 ILDAYEKGEKFYLYTGRG--PSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDI 152 (399)
Q Consensus 76 ll~~~~~~~~~~iytG~~--PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~i 152 (399)
+.+.++.|..-.+.|=|- ||| .|||||+-.++ ++| +.+.+|..+++-|=|.-. .. ....+...+..++
T Consensus 20 ~~~~l~~g~~~~v~tRFaPsPtG-~lHiGhar~al-ln~~~A~~~~G~~~LR~eDTd~----~r---~~~e~~~~I~~dl 90 (771)
T PRK14703 20 IEEDLEAGRYPRVVTRFPPEPNG-YLHIGHAKSIL-LNFGIARDYGGRCHLRMDDTNP----ET---EDTEYVEAIKDDV 90 (771)
T ss_pred HHHHHhcCCCCceEEEeCcCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEeCCCCC----Cc---CChHHHHHHHHHH
Confidence 334455544334556565 557 89999999995 666 556667777775543211 01 1223344556667
Q ss_pred HHcCCCCCceEEEeccccC
Q 015880 153 IACGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 153 lA~G~dp~kt~i~~~s~~~ 171 (399)
.-+|++++.. ++.||+..
T Consensus 91 ~wLG~~wd~~-~~~qS~~~ 108 (771)
T PRK14703 91 RWLGFDWGEH-LYYASDYF 108 (771)
T ss_pred HHcCCCCCCC-ceEeecCH
Confidence 7789987643 46677765
No 62
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=91.68 E-value=0.37 Score=47.97 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=37.6
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCc
Q 015880 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 286 (399)
Q Consensus 233 ~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsa 286 (399)
+.|.-|.|....--.-+-|.+.||.+.|...|.+.+...+| +|+||++...+
T Consensus 201 THViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~~g--~kLSKR~~~~~ 252 (314)
T PF00749_consen 201 THVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNEDG--KKLSKRKGAKS 252 (314)
T ss_dssp SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEETTS--SBSSTTCSHHB
T ss_pred CeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecCCC--cEechhhcccc
Confidence 45677777554444446778889998898888888888775 89999977534
No 63
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=91.62 E-value=0.4 Score=51.30 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=48.0
Q ss_pred ceeEEEecCCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015880 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (399)
Q Consensus 85 ~~~iytG~~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 163 (399)
++..=..=.||| .|||||+-.++ ++| +.+..|..+++-|=|.-.- . ....+...+..++.-+|++++..
T Consensus 51 kv~tRFaPsPtG-~LHiGharaal-ln~~~Ar~~gG~~iLRiEDTDp~----r---~~~e~~~~I~~dL~wLGi~~D~~- 120 (574)
T PTZ00437 51 KPYFRFPPEPNG-FLHIGHAKSMN-LNFGSARAHGGKCYLRYDDTNPE----T---EEQVYIDAIMEMVKWMGWKPDWV- 120 (574)
T ss_pred cEEEEeCCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEECCCCcc----c---cChHHHHHHHHHHHHcCCCCCCC-
Confidence 333334445667 79999999995 566 5566677777765442210 1 22334446667777899998754
Q ss_pred EEeccccCc
Q 015880 164 IFSDFDYVG 172 (399)
Q Consensus 164 i~~~s~~~~ 172 (399)
+.||++..
T Consensus 121 -~~qS~y~~ 128 (574)
T PTZ00437 121 -TFSSDYFD 128 (574)
T ss_pred -CcCchhHH
Confidence 46677653
No 64
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=91.58 E-value=0.47 Score=50.38 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=44.1
Q ss_pred CCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 015880 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (399)
.||| .|||||+-.++ ++| +.+.+|..+++-|=|.-. ... ...+...+..++.-+|++++.. ++.||+..
T Consensus 8 sPtG-~LHiG~ar~al-~n~~~A~~~~G~~iLRieDTd~----~r~---~~e~~~~I~~dL~wLG~~~d~~-~~~qS~~~ 77 (522)
T TIGR00440 8 EPNG-YLHIGHAKSIC-LNFGYAKYYNGTCNLRFDDTNP----VKE---DPEYVESIKRDVEWLGFKWEGK-IRYSSDYF 77 (522)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEEcCCCc----ccC---ChHHHHHHHHHHHHcCCCCCCC-ceEccccH
Confidence 5788 79999999995 666 556677777776544221 111 1233445566777789998432 45577765
No 65
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.38 E-value=0.24 Score=50.86 Aligned_cols=102 Identities=16% Similarity=0.083 Sum_probs=70.3
Q ss_pred CCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhh-----HHHh---hcCCCCcchHHHHHHHh------ccC--Ch
Q 015880 275 TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESV-----ELHR---KLGANLEVDIPVKYLSF------FLE--DD 338 (399)
Q Consensus 275 g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~-----e~~~---~~g~~p~~~v~~~~l~~------f~~--~~ 338 (399)
|.+||+|+++|++.+.+.+..|..|+++ +||.....+ ++-. ..+.+|- + +-.+|.+ +-. -.
T Consensus 231 ~a~~~~s~~~Sp~~~yq~~~~i~D~~~~-~~~~~~t~l~~~eI~~i~~~~~~~~~~r-~-~k~~LA~e~~~~~hG~~~a~ 307 (401)
T COG0162 231 GAVWLDSEKTSPYDFYQYWMNIEDADVK-RFLKLLTFLSLEEIEEIEKYVLKGPEPR-E-AKKLLAKEVTKLVHGEEAAE 307 (401)
T ss_pred CceEccCCCCCcHhhhhcHhcCcHHHHH-HHHHHhCcCChHHHHHHHHHhhcCCChH-H-HHHHHHHHhhHhhcCHHHHH
Confidence 3699999999999999999999999999 999765211 1111 1122331 1 1122222 111 23
Q ss_pred HHHHHHHHHHhcC---CCChHHHHH-----HHHHHHHHHhhHHHHHHHH
Q 015880 339 AELEHIKKEYGAG---GMLTGEVKQ-----RLAKVLTELVERHQVARAA 379 (399)
Q Consensus 339 ~eleei~~~~~~G---~~~~~~~K~-----~la~~i~~~l~~~r~~~~~ 379 (399)
+..++.+..|..| .+++.++|. .++..+...|.|.|.....
T Consensus 308 ~a~~~~~~~F~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr 356 (401)
T COG0162 308 AAEEEFEKLFSEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARR 356 (401)
T ss_pred HHHHHHHHHHhcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHh
Confidence 5678889999998 899999999 8888888888887765443
No 66
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=91.33 E-value=0.19 Score=50.44 Aligned_cols=54 Identities=26% Similarity=0.204 Sum_probs=32.2
Q ss_pred eeccccCchh-HHHHH--HHHHHHhCCCCc-ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDP-YFRMT--RDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~-~~~l~--rdla~r~~~~kp-~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.|+-. |+-.. .-++ -.+...+ ..+.+.++....| +|||||.+| +|++.|
T Consensus 255 ~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g--~KmSKS~gn-~i~~~~ 312 (338)
T cd00818 255 FILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDG--RKMSKSLGN-YVDPQE 312 (338)
T ss_pred EEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECCCC--CCCCCCCCC-cCCHHH
Confidence 5678999875 33222 2222 1233222 3334666655555 899999999 998755
No 67
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=90.69 E-value=0.72 Score=50.71 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=45.7
Q ss_pred CceeEEEec-CCCCCCccccchHHHH---hHHhHHhhCCCeEEEEecCcc-c--cccc----CCCHHH-HHHHHHHHHHH
Q 015880 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE-K--CMWK----NLSVEE-SQRLARENAKD 151 (399)
Q Consensus 84 ~~~~iytG~-~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~D~~-a--~~~~----~~~~e~-i~~~~~~~~~~ 151 (399)
++++|-|++ -|+| .+||||+.+++ .+.++++.-|..|..+.|+++ . ...+ ..+..+ +.++.....+.
T Consensus 2 ~~~~itt~~py~ng-~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANG-PIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCC-cccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 467888888 6888 79999988754 333344444666666555443 2 2211 245544 44455666667
Q ss_pred HHHcCCCCC
Q 015880 152 IIACGFDVT 160 (399)
Q Consensus 152 ilA~G~dp~ 160 (399)
+.++|++++
T Consensus 81 ~~~l~i~~d 89 (673)
T PRK00133 81 FAGFGISFD 89 (673)
T ss_pred HHHhCCCCC
Confidence 777776544
No 68
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=89.24 E-value=0.39 Score=51.68 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=42.3
Q ss_pred eeccccCchhHHHHHHHHHHHhCCCCcc-eeecccccCCCCCCCCCCCCCCCCceeecCcHHH
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~~~~kp~-~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~ 295 (399)
+-.+|.||..|+.-...++..+|++.|. ..+..+-. ..+ .|||||.|| .|.+.|=.++
T Consensus 331 I~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~-V~~--~kmSkr~Gn-~V~~~dll~~ 389 (566)
T TIGR00456 331 IYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGM-VPL--GSMKTRRGN-VISLDNLLDE 389 (566)
T ss_pred EEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEE-EEC--CCCCccCCc-eeeHHHHHHH
Confidence 3479999999999999999999987664 33332211 122 699999988 9999864444
No 69
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=89.23 E-value=0.31 Score=49.84 Aligned_cols=55 Identities=20% Similarity=0.104 Sum_probs=33.7
Q ss_pred eeccccCchhHHHHH-HHHHHHhCCCCc--ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~-rdla~r~~~~kp--~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||....-.. .-.+..+....| .++.+.++..+.| +|||||.+| .|++.|
T Consensus 299 ~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g--~KMSKS~Gn-~v~~~d 356 (382)
T cd00817 299 LLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDG--RKMSKSLGN-VIDPLD 356 (382)
T ss_pred eeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCC--CCccccCCC-CCCHHH
Confidence 567899987544322 222222323334 3344666765665 899999999 888765
No 70
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=89.12 E-value=0.22 Score=49.40 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=33.0
Q ss_pred eeccccCchhHH----HHHHHHHHHhCC---CCcc-eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYF----RMTRDVAPRIGY---HKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~----~l~rdla~r~~~---~kp~-~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+-.+|.||-++. .+-..++...++ +.|. .+.+-++. +. |+|||||.+| +|++.|
T Consensus 227 i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~--g~KmSkS~Gn-~v~~~d 288 (314)
T cd00812 227 IYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LE--GEKMSKSKGN-VVTPDE 288 (314)
T ss_pred eeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cC--ccccCCcCCC-CCCHHH
Confidence 446899985533 233444444553 3342 22344443 45 4899999999 999876
No 71
>PLN02224 methionine-tRNA ligase
Probab=88.97 E-value=0.8 Score=49.82 Aligned_cols=94 Identities=11% Similarity=0.098 Sum_probs=53.5
Q ss_pred hcCcccccCCHHHHHHHHHhCCceeEEEec-CCCCCCccccchHHHH---hHHhHHhhCCCeEEEE-ecCcccc--ccc-
Q 015880 63 RRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC--MWK- 134 (399)
Q Consensus 63 ~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~-~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~-I~D~~a~--~~~- 134 (399)
.|.||+..++.+. ...++++++|-|+. -|+| .+||||+.+.+ ++.++++.-|..|... =.|.|.. ...
T Consensus 51 ~~~~~~~~~~~~~---~~~~~~~~~ittp~pY~NG-~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A 126 (616)
T PLN02224 51 KRALYCTSSSQES---TVDEADTFVLTTPLYYVNA-PPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSA 126 (616)
T ss_pred cceeeccCCCccc---CCCCCCeEEEeCCCCCCCC-CCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHH
Confidence 3455655555543 12345678888888 7777 79999988764 2223344445555443 3566642 211
Q ss_pred ---CCCH-HHHHHHHHHHHHHHHHcCCCCC
Q 015880 135 ---NLSV-EESQRLARENAKDIIACGFDVT 160 (399)
Q Consensus 135 ---~~~~-e~i~~~~~~~~~~ilA~G~dp~ 160 (399)
..+. +-+++++....+.+.++|++++
T Consensus 127 ~~~g~~p~e~~~~~~~~~~~~~~~l~I~~D 156 (616)
T PLN02224 127 AANGRNPPEHCDIISQSYRTLWKDLDIAYD 156 (616)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Confidence 2343 3345555555566667777664
No 72
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.97 E-value=1.1 Score=47.23 Aligned_cols=65 Identities=22% Similarity=0.362 Sum_probs=42.9
Q ss_pred EecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015880 90 TGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTF 163 (399)
Q Consensus 90 tG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 163 (399)
.-=+||| .|||||.-..++-.|+|.+|...+++-.-| + ++ -..++.+. .++.++--+|+.|++..
T Consensus 205 FPPEpSG-yLHIGHAKAALLNqYfa~~~~G~LIvRFDD-T----NPaKE~~eFe~---~IleDl~~LgIkpd~~T 270 (712)
T KOG1147|consen 205 FPPEPSG-YLHIGHAKAALLNQYFAQAYQGKLIVRFDD-T----NPAKENEEFED---VILEDLSLLGIKPDRVT 270 (712)
T ss_pred cCCCCCc-eeehhhHHHHHHHHHHHHhcCceEEEEecC-C----CcchhhHHHHH---HHHHHHHHhCcCcceee
Confidence 3347888 899999999976667999998888875333 2 11 22233332 34566666899887543
No 73
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=87.65 E-value=1.4 Score=36.27 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=34.4
Q ss_pred EEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCC
Q 015880 89 YTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFD 158 (399)
Q Consensus 89 ytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~d 158 (399)
++|-.| +.+|+||+..+.....++ + .+++.++|.+....+. ....+.++.....+.++.+|.+
T Consensus 3 ~~~G~F--dp~H~GH~~l~~~a~~~~---d-~~i~~i~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~G~~ 65 (105)
T cd02156 3 RFPGEP--GYLHIGHAKLICRAKGIA---D-QCVVRIDDNPPVKVWQ-DPHELEERKESIEEDISVCGED 65 (105)
T ss_pred EeCCCC--CCCCHHHHHHHHHHHHhC---C-cEEEEEcCCCcccccC-ChHHHHHHHHHHHHHHHHHHhh
Confidence 444444 579999998754333233 3 4666778887654322 3444444444444444445553
No 74
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=86.57 E-value=1.5 Score=48.81 Aligned_cols=51 Identities=25% Similarity=0.270 Sum_probs=35.0
Q ss_pred eeccccCchhHHHHHHHHH--HHhCCCCcc--eeecccccCCCCCCCCCCCCCCCCcee
Q 015880 234 LIPCAIDQDPYFRMTRDVA--PRIGYHKPA--LIESSFFPALQGETGKMSASDPNSAIY 288 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla--~r~~~~kp~--~l~~~~lp~L~g~g~KMSKS~~nsaI~ 288 (399)
++--|-| -=+|=++|-++ -++...-|. ++.++++..-+| .|||||-|| .|-
T Consensus 549 llETG~D-ILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~G--RKMSKSLGN-VID 603 (995)
T KOG0432|consen 549 LLETGHD-ILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHG--RKMSKSLGN-VID 603 (995)
T ss_pred hhhcCch-HHHHHHHHHHHhhhhhcCCCCchheeechhhccccc--cccchhhcc-ccC
Confidence 4567777 55666666554 445444553 456888888886 899999999 653
No 75
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=86.39 E-value=0.41 Score=50.51 Aligned_cols=54 Identities=24% Similarity=0.220 Sum_probs=33.7
Q ss_pred eeccccCchhHHHHH-HHHHHHhCCCCc-ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~-rdla~r~~~~kp-~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||-.++-+. .-++..++.+.| ..+++-++. +.| +|||||.+| .|++.|
T Consensus 257 ~~~~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~-~~G--~KMSKS~GN-~i~~~d 312 (511)
T PRK11893 257 VHLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLT-LDG--EKMSKSLGN-VIDPFD 312 (511)
T ss_pred ceEecccccccchhHHHHHHHhCCCCCCCEEEeeccEE-ECC--eeecccCCc-EEcHHH
Confidence 467899998853222 112222355555 344556664 464 899999999 999865
No 76
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=86.35 E-value=0.6 Score=50.60 Aligned_cols=54 Identities=26% Similarity=0.222 Sum_probs=30.6
Q ss_pred eeccccCchh-HHHHHHHHHHHhCCCCc--ceeecccccCCCCCCCCCCCCCCCCceeec
Q 015880 234 LIPCAIDQDP-YFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 290 (399)
Q Consensus 234 ~v~~G~DQd~-~~~l~rdla~r~~~~kp--~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~ 290 (399)
+..-|.||-. |+....-+...+....| .++.+.++...+| +|||||.+| .|...
T Consensus 517 ~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p~ 573 (601)
T PF00133_consen 517 LYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDG--RKMSKSKGN-VIDPE 573 (601)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTS--SB-BTTTTB---BHH
T ss_pred cccCCccchhhHHHHhHhhccccccCCchheeeecccccccce--eecccCCCc-ccCHH
Confidence 5678999876 44333333333443344 3455677777775 999999999 77543
No 77
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=86.31 E-value=1.6 Score=48.94 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=52.4
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCC--CCCccccchHHHH---hHHhHHhhCCCeEEEEec-Ccccccc
Q 015880 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPS--SEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCMW 133 (399)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PT--g~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~-D~~a~~~ 133 (399)
.+.+.|+|....+ +++++++..|+ |+ | .||+||+.... ++.++|+.-|..|....| |.|+.-.
T Consensus 17 ~W~~~~~f~~~~~---------~~~~~~i~~~p-Py~nG-~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpi 85 (805)
T PRK00390 17 YWEENKTFKTTED---------SSKKYYVLDMF-PYPSG-GLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPA 85 (805)
T ss_pred HHHHCCCcccCcc---------CCCCEEEEccC-CCCCC-CcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHH
Confidence 4555666654221 33578888887 76 7 79999988753 333456655666655444 4433211
Q ss_pred ------cCCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 015880 134 ------KNLSVEE-SQRLARENAKDIIACGFDVT 160 (399)
Q Consensus 134 ------~~~~~e~-i~~~~~~~~~~ilA~G~dp~ 160 (399)
...+..+ +.++..+..+++.++|+..+
T Consensus 86 e~~a~~~g~~~~~~~~~~~~~~~~~~~~lGi~~D 119 (805)
T PRK00390 86 ENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYD 119 (805)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 1234333 44555666677788888544
No 78
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=85.88 E-value=0.77 Score=52.52 Aligned_cols=54 Identities=24% Similarity=0.185 Sum_probs=32.0
Q ss_pred eeccccCchh-HHHHHHHHHHHhCCCCc--ceeecccccCCCCCCCCCCCCCCCCceeec
Q 015880 234 LIPCAIDQDP-YFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 290 (399)
Q Consensus 234 ~v~~G~DQd~-~~~l~rdla~r~~~~kp--~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~ 290 (399)
+...|.||.. ||.-+--.+--+....| .++.+.++...+| +|||||.+| .|...
T Consensus 586 ~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G--~KMSKSlGN-vIdP~ 642 (961)
T PRK13804 586 LYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKG--EKMSKSLGN-TVSPQ 642 (961)
T ss_pred EEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCC--CCccCCCCC-cCCHH
Confidence 6689999975 44332111111222233 3445667766665 899999999 77543
No 79
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=85.69 E-value=0.68 Score=52.30 Aligned_cols=55 Identities=22% Similarity=0.178 Sum_probs=32.7
Q ss_pred eeccccCchh-HHHHHHHHHHH-hCCCCcc-eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDP-YFRMTRDVAPR-IGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~-~~~l~rdla~r-~~~~kp~-~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||-. |+......+-- .+...|. ++.+.++...+ |+|||||.+| .|+..|
T Consensus 567 ~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~--G~KMSKSkGN-vI~p~d 624 (861)
T TIGR00392 567 FILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEK--GRKMSKSLGN-VVDPLK 624 (861)
T ss_pred EEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCC--CCCcCCCCCC-CCCHHH
Confidence 6789999965 44333333222 2443332 33355555445 4899999999 887654
No 80
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.52 E-value=2 Score=46.23 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=41.7
Q ss_pred CceeEEEecC-CCCCCccccchHHHH---hHHhHHhhCCCeEEEE-ecCcccc--ccc----CCCHHH-HHHHHHHHHHH
Q 015880 84 EKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC--MWK----NLSVEE-SQRLARENAKD 151 (399)
Q Consensus 84 ~~~~iytG~~-PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~-I~D~~a~--~~~----~~~~e~-i~~~~~~~~~~ 151 (399)
++++|-|.+= |.| .+||||+.+.+ ...++|+.-|..++.+ =+|.|+. ..+ ..++++ +.++.......
T Consensus 5 ~~~~VTtalpY~Ng-~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~ 83 (558)
T COG0143 5 KKILVTTALPYPNG-PPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKEL 83 (558)
T ss_pred CcEEEecCCCCCCC-CcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4555555553 556 89999988754 3344566556665554 4555532 222 366655 44455555555
Q ss_pred HHHcCCC
Q 015880 152 IIACGFD 158 (399)
Q Consensus 152 ilA~G~d 158 (399)
+.+++++
T Consensus 84 ~~~l~Is 90 (558)
T COG0143 84 FKALNIS 90 (558)
T ss_pred HHHhCCc
Confidence 5555543
No 81
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.39 E-value=3.9 Score=44.23 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=50.4
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCcc-eeecccccCCC-CCCCCCCCCCCCCceeecCcHHHHHHHh
Q 015880 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQ-GETGKMSASDPNSAIYVTDSAKAIKNKI 300 (399)
Q Consensus 233 ~~v~~G~DQd~~~~l~rdla~r~~~~kp~-~l~~~~lp~L~-g~g~KMSKS~~nsaI~L~D~~~~i~~KI 300 (399)
++--+|.||.+|+.-.+-++..+|+..+. .+.+..+.... |.|.||||=.++ .|.|.|--+++.+|-
T Consensus 337 ~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~-~vtl~dllde~~era 405 (577)
T COG0018 337 LIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN-VVTLDDLLDEAGERA 405 (577)
T ss_pred EEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc-eEEHHHHHHHHHHHh
Confidence 55579999999999999999999997663 33333333333 347899999998 999999777777444
No 82
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=85.32 E-value=0.78 Score=52.19 Aligned_cols=52 Identities=29% Similarity=0.250 Sum_probs=32.6
Q ss_pred eeccccCchh-HH--HHHHHHHHHhCCCCcc-eeecccccCCCCCCCCCCCCCCCCceee
Q 015880 234 LIPCAIDQDP-YF--RMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYV 289 (399)
Q Consensus 234 ~v~~G~DQd~-~~--~l~rdla~r~~~~kp~-~l~~~~lp~L~g~g~KMSKS~~nsaI~L 289 (399)
+...|.||.. |+ .+-..++- .|.+.+. ++.+.++...+| +|||||.+| .|..
T Consensus 548 l~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~~G--~KMSKSlGN-vIdP 603 (912)
T PRK05743 548 LYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDGKG--RKMSKSLGN-VIDP 603 (912)
T ss_pred EEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECCCC--CCCCCCCCC-cCCH
Confidence 6689999964 32 23344443 4544332 334667766665 899999999 6643
No 83
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=84.83 E-value=1.6 Score=44.84 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=31.2
Q ss_pred eeeccccCchhHHHHH-HHHHHHhCCCCcceee-cccccCCCCCCCCCCCCCCCCceeecC
Q 015880 233 CLIPCAIDQDPYFRMT-RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 233 ~~v~~G~DQd~~~~l~-rdla~r~~~~kp~~l~-~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
.+..+|.|--+++-+. =-+.--.+.+.|..+. +-++. +.| +|||||.+| +||..|
T Consensus 284 ~v~~iGkDi~~fH~i~~pa~l~a~~~~lP~~i~~~~~~~-~~g--~K~SkS~gn-~i~~~~ 340 (391)
T PF09334_consen 284 IVHFIGKDIIRFHAIYWPAMLLAAGLPLPRRIVVHGFLT-LDG--EKMSKSRGN-VIWPDD 340 (391)
T ss_dssp EEEEEEGGGHHHHHTHHHHHHHHCTB---SEEEEE--EE-ETT--CCEETTTTE-SSBHHH
T ss_pred EEEEEccchhHHHHHHhHHHHhcccCCCCCEEEeeeeEE-ECC--eeccccCCc-ccCHHH
Confidence 4557888866665444 1111225666665443 33443 565 899999988 998754
No 84
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=84.12 E-value=0.73 Score=45.78 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=32.2
Q ss_pred eeccccCchhHHHHH-HHHHHHhCCCCcceee-cccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~-rdla~r~~~~kp~~l~-~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+..+|.|+-.++-+. --+..-.+.+.|..++ +.++ .+.| +|||||.+| +|++.|
T Consensus 238 v~~~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~-~~~g--~kmSkS~gn-~i~~~~ 293 (319)
T cd00814 238 VHFIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYL-TVEG--KKMSKSRGN-VVDPDD 293 (319)
T ss_pred EEEEeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeE-EECC--eeecccCCc-ccCHHH
Confidence 447999988764332 1122224555454333 3333 4444 899999999 998755
No 85
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=83.25 E-value=2.6 Score=45.10 Aligned_cols=71 Identities=24% Similarity=0.363 Sum_probs=40.0
Q ss_pred EEEecCCC--CCCccccchHHH-----HhHHhHHhhCCCeEEEEe-cCccccc--c---c-CCCHHHH-HHHHHHHHHHH
Q 015880 88 LYTGRGPS--SEALHLGHLVPF-----MFTKYLQDAFKVPLVIQL-TDDEKCM--W---K-NLSVEES-QRLARENAKDI 152 (399)
Q Consensus 88 iytG~~PT--g~slHlGhlv~~-----~~~~~lQ~~~~~~v~I~I-~D~~a~~--~---~-~~~~e~i-~~~~~~~~~~i 152 (399)
+.|+-=|+ | .+||||+.+. ++.+|+. .-|..|.... .|.|..- . + ..+..++ .+++....+++
T Consensus 6 ~i~~~~py~ng-~~HiGH~~~~~~~~D~~~R~~r-~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 6 LITSAWPYANG-PLHLGHLAGSGLPADVFARYQR-LKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred EEecCCCCCCC-CccccccccchhHHHHHHHHHH-hcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44444455 5 8999998875 3444443 3466665543 4544221 1 1 2455543 44556666677
Q ss_pred HHcCCCCC
Q 015880 153 IACGFDVT 160 (399)
Q Consensus 153 lA~G~dp~ 160 (399)
.++|++++
T Consensus 84 ~~l~i~~d 91 (556)
T PRK12268 84 KKLGISYD 91 (556)
T ss_pred HHcCCcCC
Confidence 77887654
No 86
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.61 E-value=2 Score=48.57 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=36.6
Q ss_pred eeccccCch-hHHHHHHHHHHHhCCCCc--ceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHH
Q 015880 234 LIPCAIDQD-PYFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 299 (399)
Q Consensus 234 ~v~~G~DQd-~~~~l~rdla~r~~~~kp--~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~K 299 (399)
++.=|.||. .||.-.--+.--+....| ..+.+-|+..=+ |.|||||.+| .| +|++|-+|
T Consensus 558 ~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~--GrKMSKSlGN-~v----~P~~V~~~ 619 (933)
T COG0060 558 FYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEK--GRKMSKSLGN-VV----DPQDVIDK 619 (933)
T ss_pred EEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCC--CCCccccCCC-cC----CHHHHHHh
Confidence 667799985 577655333333333345 245555655555 5999999999 54 46666654
No 87
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=81.59 E-value=8.9 Score=42.24 Aligned_cols=52 Identities=21% Similarity=0.232 Sum_probs=32.7
Q ss_pred eeccccCchhHHHHH---HHHHHHhCCCCcceee-cccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMT---RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~---rdla~r~~~~kp~~l~-~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+..+|.|-..++.+. .-++ .|++.|..+. +-++.. +| +|||||.+| .|+..|
T Consensus 287 v~~iGkDi~~fH~i~wpa~l~a--~g~~lP~~v~~hg~v~~-~G--~KMSKS~GN-vV~p~d 342 (673)
T PRK00133 287 YHFIGKDIIYFHTLFWPAMLEG--AGYRLPTNVFAHGFLTV-EG--AKMSKSRGT-FIWART 342 (673)
T ss_pred EEEEeecchhHHHHHHHHHHHh--CCCCCCCEEeeeccEEe-cC--CcccccCCc-ccCHHH
Confidence 346899976655432 2233 5565564433 455544 54 899999999 888655
No 88
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=81.53 E-value=1.6 Score=46.93 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=42.5
Q ss_pred eeccccCchhHHHHHHHHHHHhCCCCcc-eee--cccccCCCCCCCCCCCCCCCCceeecCcHHH
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIE--SSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~~~~kp~-~l~--~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~ 295 (399)
+-.+|.||..|+.-...+++.+|+..+. ..| .-++- +. |+||||-.|+ +|.|+|=-++
T Consensus 328 IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~--g~kmStR~G~-~v~l~dLlde 388 (562)
T PRK12451 328 LYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KD--GKKMSTRKGR-VVLLEEVLEE 388 (562)
T ss_pred EEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cC--CCCCcCCCCC-eeEHHHHHHH
Confidence 3379999999999999999999975332 222 22333 34 4799999888 9999884443
No 89
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=81.46 E-value=4.3 Score=42.79 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=36.8
Q ss_pred CCCCCccccchHHHH----hHHhHHhhCCCeEEEE-ecCcccc--ccc----CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 015880 94 PSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ-LTDDEKC--MWK----NLSVEE-SQRLARENAKDIIACGFDVT 160 (399)
Q Consensus 94 PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~-I~D~~a~--~~~----~~~~e~-i~~~~~~~~~~ilA~G~dp~ 160 (399)
|+| .+||||+.+++ +.++++. .|..|... =.|++.. ..+ ..+..+ ++.+..+..+++.++|++++
T Consensus 12 ~~g-~~HiGh~~~~~~~Dv~~R~~r~-~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D 88 (511)
T PRK11893 12 PNG-KPHIGHAYTTLAADVLARFKRL-RGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYD 88 (511)
T ss_pred CCC-CcccchhHHHHHHHHHHHHHHh-cCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 345 89999987754 3344443 45555443 3444422 111 245544 34455666677788898765
No 90
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=80.83 E-value=0.7 Score=47.46 Aligned_cols=64 Identities=23% Similarity=0.380 Sum_probs=30.0
Q ss_pred CCCCCccccchHHHH----hHHhHHhhCCCeEEEE-ecCcccccc--c----CCCHHHH-HHHHHHHHHHHHHcCCCC
Q 015880 94 PSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ-LTDDEKCMW--K----NLSVEES-QRLARENAKDIIACGFDV 159 (399)
Q Consensus 94 PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~-I~D~~a~~~--~----~~~~e~i-~~~~~~~~~~ilA~G~dp 159 (399)
|.| .|||||+.+.+ +.+|++. -|..+.+. =+|.|..-. + ..+.+++ .++.....+.+.++|++.
T Consensus 10 ~Ng-~lHlGH~~~~l~ADv~aR~~r~-~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~ 85 (391)
T PF09334_consen 10 PNG-DLHLGHLYPYLAADVLARYLRL-RGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISY 85 (391)
T ss_dssp TSS-S-BHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---
T ss_pred CCC-CCCCChhHHHHHHHHHHHHHhh-cccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 667 79999988764 3444444 46666554 467774321 1 2555543 333333334444455443
No 91
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=80.79 E-value=1.4 Score=46.81 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=32.7
Q ss_pred eeccccCchhHHHHH-HHHHHHhCCCCccee-ecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~-rdla~r~~~~kp~~l-~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+..+|.|...+.-+. .-+..-++.+.|..+ .+-++. +. |+|||||.+| .|++.|
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g~v~-~~--g~KmSKS~Gn-~i~~~d 340 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLT-VE--GGKMSKSLGN-VVDPSD 340 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCCCCCCCEEEeeccEE-EC--CceecccCCc-eecHHH
Confidence 568999988854332 112233455445333 344443 33 4899999999 898765
No 92
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=80.34 E-value=1.5 Score=49.17 Aligned_cols=54 Identities=20% Similarity=0.167 Sum_probs=31.6
Q ss_pred eeccccCchhHHHHHHHHHHH--hCCCCc--ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r--~~~~kp--~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||-. +-+.+-++.. +....| ..+.+.++...+| +|||||.+| .|+..|
T Consensus 489 ~~~~G~Di~~-~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~ 546 (800)
T PRK13208 489 LRPQGHDIIR-TWLFYTILRAYLLTGKLPWKNIMISGMVLDPDG--KKMSKSKGN-VVTPEE 546 (800)
T ss_pred EEEeecchhh-hHHHHHHHHHHHhcCCCCcceEEEeeEEECCCC--CCCCCCCCC-CCCHHH
Confidence 5568899875 2233333222 222234 2334666666665 899999999 887644
No 93
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=80.08 E-value=1.6 Score=50.00 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=30.6
Q ss_pred eeccccCchh-HHHHHHHHHHH-hCCCCc-ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDP-YFRMTRDVAPR-IGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~-~~~l~rdla~r-~~~~kp-~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
++..|.||-. |+-....+.-- ++.+.+ ..+.+.++...+| +|||||.+| .|...|
T Consensus 548 ~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G--~KMSKSlGN-vIdP~d 605 (975)
T PRK06039 548 FIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDG--QKMSKSLGN-YVDPFE 605 (975)
T ss_pred EEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCC--CCcCCCCCC-cCCHHH
Confidence 5678999975 32222222111 233222 2334555555554 899999999 776544
No 94
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=80.06 E-value=3.4 Score=43.96 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=38.0
Q ss_pred CCCCCccccchHHHH---hHHhHHhhCCCeEEEEe-cCcccc--cc---c-CCCHHHHHH-HHHHHHHHHHHcCCCCC
Q 015880 94 PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEKC--MW---K-NLSVEESQR-LARENAKDIIACGFDVT 160 (399)
Q Consensus 94 PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I-~D~~a~--~~---~-~~~~e~i~~-~~~~~~~~ilA~G~dp~ 160 (399)
|+| .+||||+.+++ ++.++++..|..|.... .|.+.. .. + ..+..++.+ +.....+++.++|++++
T Consensus 10 ~ng-~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 86 (530)
T TIGR00398 10 ANG-KPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFD 86 (530)
T ss_pred CCC-CcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 677 79999988764 33333444466665442 444421 11 1 356665444 44566667778888765
No 95
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=79.81 E-value=11 Score=42.90 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=29.3
Q ss_pred eeccccCchhH-HHHHHHHHHHhCC---CCc-ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPY-FRMTRDVAPRIGY---HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~-~~l~rdla~r~~~---~kp-~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||-.+ .-..+-. ....+ +-| ..+.+.++.. + |+|||||.+| .|++.+
T Consensus 533 ~~~~GkDii~~Hl~~~~~~-~~a~~~~~~~Pk~v~~hG~vl~-~--G~KMSKS~GN-vVdp~e 590 (897)
T PRK12300 533 WRHSGKDLIPNHLTFFIFN-HVAIFPEEKWPRGIVVNGFVLL-E--GKKMSKSKGN-VIPLRK 590 (897)
T ss_pred EEEeeeccCccHHHHHHHH-HHHhcCCCccCcEEEEcceEEE-C--CccccCcCCC-CCCHHH
Confidence 56789999652 2222111 11111 223 3344555544 5 5899999999 776543
No 96
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=79.35 E-value=1.7 Score=49.22 Aligned_cols=54 Identities=24% Similarity=0.213 Sum_probs=34.5
Q ss_pred eeccccCchhHHHHHHHHHHH--hCCCCc--ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r--~~~~kp--~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||-.+. +++-++.- +....| .++.+.++...+| +|||||.+| .|++.|
T Consensus 481 ~~~~G~Dii~fw-~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKS~GN-~i~p~~ 538 (861)
T TIGR00422 481 LLVTGYDIIFFW-VARMIFRSLALTGQVPFKEVYIHGLVRDEQG--RKMSKSLGN-VIDPLD 538 (861)
T ss_pred eeecchhhhhHH-HHHHHHHHHHhcCCCchheEEEeeEEECCCC--CCCCcCCCC-CCCHHH
Confidence 668899987654 33333322 322345 3445667777775 899999999 887654
No 97
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=79.34 E-value=1.1 Score=49.01 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=32.2
Q ss_pred eeccccCchhHHHHH-HHHHHHhCCCCcceee-cccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~-rdla~r~~~~kp~~l~-~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||..++-+- --+..-.+++.|..+. +-++. +. |+|||||.+| .|+..|
T Consensus 257 ~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~-~e--g~KMSKS~GN-~i~p~d 312 (648)
T PRK12267 257 VHLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWL-MK--DGKMSKSKGN-VVDPEE 312 (648)
T ss_pred eEEEeeeecchhHHHHHHHHHhCCCCCCcEEEecceEE-EC--CceecccCCc-ccCHHH
Confidence 457899998754332 1112224555554332 33433 34 4899999999 888755
No 98
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=79.13 E-value=1.4 Score=47.21 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=32.3
Q ss_pred eeccccCchhHHHHH-HHHHHHhC--CCCcc-eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMT-RDVAPRIG--YHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~-rdla~r~~--~~kp~-~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.|+-++..+. --+..-.+ ++.|. ++.+-++. ++ |+|||||.+| .|+..|
T Consensus 290 ~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~-~~--G~KMSKS~GN-~I~p~d 347 (556)
T PRK12268 290 YYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLT-LE--GGKFSKSRGW-GIWVDD 347 (556)
T ss_pred EEEEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEE-EC--CeeeccCCCc-ccCHHH
Confidence 456799987765432 22233333 44443 33344553 45 4899999999 888655
No 99
>PLN02843 isoleucyl-tRNA synthetase
Probab=78.84 E-value=2 Score=49.24 Aligned_cols=52 Identities=25% Similarity=0.167 Sum_probs=30.4
Q ss_pred eeccccCchh--HHHHH-HHHHHHhCCCCc-ceeecccccCCCCCCCCCCCCCCCCceee
Q 015880 234 LIPCAIDQDP--YFRMT-RDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 289 (399)
Q Consensus 234 ~v~~G~DQd~--~~~l~-rdla~r~~~~kp-~~l~~~~lp~L~g~g~KMSKS~~nsaI~L 289 (399)
+...|.||.. +..+. .-++ -.|...+ ..+.+.++..-+| +|||||.+| .|..
T Consensus 567 l~~eG~Di~rgWf~s~l~~~~~-~~g~~Pfk~v~~HG~vld~~G--~KMSKSlGN-vI~p 622 (974)
T PLN02843 567 LYLEGSDQHRGWFQSSLLTSVA-TKGKAPYKSVLTHGFVLDEKG--FKMSKSLGN-VVDP 622 (974)
T ss_pred eeeeeccccchHHHHHHHHHHH-hcCCCccceEEEeccEECCCC--CCcCCCCCC-cCCH
Confidence 5688999987 22222 2222 1333222 2334666665564 899999999 6653
No 100
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=77.21 E-value=2 Score=48.69 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=34.7
Q ss_pred eeccccCchhHHHHHHHHHHHhC--CCCc--ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~~--~~kp--~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||-.+. ++|-++..+. ...| .++.+.++...+| +|||||.|| .|+..|
T Consensus 476 ~~~~G~Dii~~W-~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKSlGN-vIdP~d 533 (874)
T PRK05729 476 VLVTGFDIIFFW-VARMIMMGLHFTGQVPFKDVYIHGLVRDEQG--RKMSKSKGN-VIDPLD 533 (874)
T ss_pred cccccccccchH-HHHHHHHHHHhcCCCchhheEEeeeEECCCC--CCcccCCCC-CCCHHH
Confidence 557899987643 3444443322 2345 3445677777775 899999999 887654
No 101
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=76.78 E-value=8.1 Score=43.72 Aligned_cols=91 Identities=19% Similarity=0.221 Sum_probs=50.5
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceeEEEecC-CCCCCccccchHHHH---hHHhHHhhCCCeEEEEec-Cccccc-c
Q 015880 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM-W 133 (399)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~-PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~-D~~a~~-~ 133 (399)
.+.+.++|....+ ..++++++..|+= ||| .||+||+.... +..++++.-|..|....| |.|+.- .
T Consensus 13 ~W~~~~~f~~~~~--------~~k~k~~v~~~pPy~nG-~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie 83 (842)
T TIGR00396 13 KWKENKVFKFTDD--------SNKPKYYILDMFPYPSG-ALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAE 83 (842)
T ss_pred HHHhcCCcccCCC--------CCCCCEEEEcCCCCCCC-ccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHH
Confidence 4455666644322 2334577877743 236 79999988753 333455555666665554 333331 1
Q ss_pred -----cCCCHHH-HHHHHHHHHHHHHHcCCCC
Q 015880 134 -----KNLSVEE-SQRLARENAKDIIACGFDV 159 (399)
Q Consensus 134 -----~~~~~e~-i~~~~~~~~~~ilA~G~dp 159 (399)
...+..+ +.++..+..+++.++|+..
T Consensus 84 ~~a~~~g~~p~~~~~~~~~~~~~~~~~lG~~~ 115 (842)
T TIGR00396 84 NAAIKRGIHPAKWTYENIANMKKQLQALGFSY 115 (842)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 1233333 4455566667777888643
No 102
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=76.43 E-value=8.4 Score=42.18 Aligned_cols=76 Identities=13% Similarity=0.084 Sum_probs=40.9
Q ss_pred CceeEEEecC-CCCCCccccchHHHH---hHHhHHhhCCCeEEEE-ecCccccc--cc----CCCHHHH-HHHHHHHHHH
Q 015880 84 EKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKCM--WK----NLSVEES-QRLARENAKD 151 (399)
Q Consensus 84 ~~~~iytG~~-PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~-I~D~~a~~--~~----~~~~e~i-~~~~~~~~~~ 151 (399)
++++|-|.+= |+| .+||||+.+.+ +..++++.-|..+..+ =+|.|..- .+ ..+..++ ..+.....++
T Consensus 4 ~~~~it~~~py~ng-~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~ 82 (648)
T PRK12267 4 KTFYITTPIYYPNG-KPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKEL 82 (648)
T ss_pred CCEEEeeCCCCCCC-CcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3455544442 446 89999987754 2333344445555443 45655321 11 2555543 3344555566
Q ss_pred HHHcCCCCC
Q 015880 152 IIACGFDVT 160 (399)
Q Consensus 152 ilA~G~dp~ 160 (399)
+.++|++.+
T Consensus 83 l~~lgI~~D 91 (648)
T PRK12267 83 WKKLDISYD 91 (648)
T ss_pred HHHcCCCCC
Confidence 777888665
No 103
>PLN02946 cysteine-tRNA ligase
Probab=76.23 E-value=10 Score=40.79 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=42.6
Q ss_pred CceeEEEecCCC-CCCccccchHHHH----hHHhHHhhCCCeEEEE--ecCcc-ccccc----CCCHHHH-HHHHHHHHH
Q 015880 84 EKFYLYTGRGPS-SEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAK 150 (399)
Q Consensus 84 ~~~~iytG~~PT-g~slHlGhlv~~~----~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i-~~~~~~~~~ 150 (399)
..+.+|+ .+|| -+.+||||+.+++ +.+||. ..|..|..+ ++|.- +.+.+ ..++.++ .++.....+
T Consensus 79 ~~v~~Y~-CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr-~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~ 156 (557)
T PLN02946 79 GKVGMYV-CGVTAYDLSHIGHARVYVTFDVLYRYLK-HLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLS 156 (557)
T ss_pred CceeEEE-eCCccCCCCccccchhhHHHHHHHHHHH-hcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3455553 2566 2389999976653 344454 456555443 55544 44432 3676664 445567777
Q ss_pred HHHHcCCC
Q 015880 151 DIIACGFD 158 (399)
Q Consensus 151 ~ilA~G~d 158 (399)
++.++|+.
T Consensus 157 d~~~LnI~ 164 (557)
T PLN02946 157 DMAYLHCL 164 (557)
T ss_pred HHHHCCCC
Confidence 88888875
No 104
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=75.87 E-value=2.3 Score=49.24 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=33.8
Q ss_pred eeccccCchhHHHHHHHHHHHhC--CCCc--ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~~--~~kp--~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||-.+ =.+|-++..+. ...| .++.+.++..-+| +|||||.+| .|+..|
T Consensus 494 ~~~~G~Dii~~-W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G--~KMSKSkGN-vIdP~d 551 (1052)
T PRK14900 494 VMETGHDIIFF-WVARMMMMGLHFMGEVPFRTVYLHPMVRDEKG--QKMSKTKGN-VIDPLV 551 (1052)
T ss_pred hhcccccHHhH-HHHHHHHHHHHhcCCCccceeEecccEECCCC--CCccCCCCC-CCCHHH
Confidence 55788888653 34454544332 2345 2444666666564 899999999 887655
No 105
>PLN02286 arginine-tRNA ligase
Probab=75.63 E-value=4.1 Score=44.05 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=44.8
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCc------ceeecccccCCCCCCCCCCCCCCCCceeecCcHHH
Q 015880 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKP------ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (399)
Q Consensus 233 ~~v~~G~DQd~~~~l~rdla~r~~~~kp------~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~ 295 (399)
++-.+|.||..|+.-...+++.+|+.++ .++..-++-++.| +||||-.|+ .|+|+|=-++
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g--~kmStR~G~-~v~L~dllde 395 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG--KRFRTRSGE-VVRLVDLLDE 395 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC--CcccCCCCC-eeEHHHHHHH
Confidence 4557999999999999999999997522 1233456655654 799988777 9999884444
No 106
>PLN02959 aminoacyl-tRNA ligase
Probab=74.97 E-value=2.8 Score=48.67 Aligned_cols=54 Identities=17% Similarity=0.012 Sum_probs=28.9
Q ss_pred eeccccCchhHH-HHHHHHHHHhCCCCcc---eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYF-RMTRDVAPRIGYHKPA---LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~-~l~rdla~r~~~~kp~---~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+..-|.||.... ..++-...-+....|. .+.+.++. ++ |+|||||.+| .|.+.+
T Consensus 674 l~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~-~~--G~KMSKSkGN-vI~p~d 731 (1084)
T PLN02959 674 LRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLM-LN--SEKMSKSTGN-FLTLRQ 731 (1084)
T ss_pred EEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEe-cC--CcCccccCCC-cCCHHH
Confidence 456788986643 2222111111112332 22333443 55 4999999999 887654
No 107
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=74.17 E-value=2.7 Score=43.07 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=40.4
Q ss_pred ceeEE-EecCCCCCCccccchHHHH----hHHhHHhhCCCeEEEE--ecCcc-ccccc----CCCHHHHH-HHHHHHHHH
Q 015880 85 KFYLY-TGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEESQ-RLARENAKD 151 (399)
Q Consensus 85 ~~~iy-tG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i~-~~~~~~~~~ 151 (399)
.+.+| ||-=|-+ .+||||+.+++ +.+||+. .|..|..+ ++|-. +...+ ..+++++. .+.....++
T Consensus 9 ~v~~YvCGpTvY~-~~HIGh~r~~V~~Dvl~R~lr~-~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d 86 (384)
T PRK12418 9 TATMYVCGITPYD-ATHLGHAATYLAFDLVNRVWRD-AGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRED 86 (384)
T ss_pred eeEEEecCCCCCC-CCccchhHHHHHHHHHHHHHHH-cCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44444 4544445 89999987753 3344544 46554443 44433 33332 36776654 455666777
Q ss_pred HHHcCC
Q 015880 152 IIACGF 157 (399)
Q Consensus 152 ilA~G~ 157 (399)
+.++|+
T Consensus 87 ~~~Lni 92 (384)
T PRK12418 87 MEALRV 92 (384)
T ss_pred HHHhCC
Confidence 778886
No 108
>PLN02943 aminoacyl-tRNA ligase
Probab=74.16 E-value=2.4 Score=48.62 Aligned_cols=54 Identities=26% Similarity=0.166 Sum_probs=34.2
Q ss_pred eeccccCchhHHHHHHHHHHHhC--CCCc--ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~~--~~kp--~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||-. +=++|-++.-+. ...| ....+.++...+| +|||||.|| .|+..+
T Consensus 539 l~~~G~Dii~-fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~ 596 (958)
T PLN02943 539 VLETGHDILF-FWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQG--RKMSKTLGN-VIDPLD 596 (958)
T ss_pred EEEEeehHHH-HHHHHHHHhhhhhcCCCChheEEEeccEECCCC--CcccCcCCC-CCCHHH
Confidence 5567999874 344554443322 2335 2344666666675 899999999 887655
No 109
>PLN02563 aminoacyl-tRNA ligase
Probab=74.16 E-value=1.9 Score=49.34 Aligned_cols=13 Identities=38% Similarity=0.345 Sum_probs=10.7
Q ss_pred CCCCCCCCCceeec
Q 015880 277 KMSASDPNSAIYVT 290 (399)
Q Consensus 277 KMSKS~~nsaI~L~ 290 (399)
|||||.+| .|...
T Consensus 723 KMSKSKGN-vVdP~ 735 (963)
T PLN02563 723 KMSKSRGN-VVNPD 735 (963)
T ss_pred ccccccCC-cCCHH
Confidence 99999999 77643
No 110
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=73.97 E-value=9 Score=38.00 Aligned_cols=74 Identities=23% Similarity=0.332 Sum_probs=41.2
Q ss_pred CceeEE-EecCCCCCCccccchHHHH----hHHhHHhhCCCeEEE--EecCcc-ccccc----CCCHHHHH-HHHHHHHH
Q 015880 84 EKFYLY-TGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVI--QLTDDE-KCMWK----NLSVEESQ-RLARENAK 150 (399)
Q Consensus 84 ~~~~iy-tG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I--~I~D~~-a~~~~----~~~~e~i~-~~~~~~~~ 150 (399)
+.+.+| ||--+-. .+||||+-+++ +.++|+. .|..|.. -|+|.. +.+.+ ..++.++. .+..+..+
T Consensus 7 ~~v~~Y~CGPTVYd-~~HiGhaR~~v~~D~l~R~L~~-~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~ 84 (300)
T PF01406_consen 7 GKVRMYVCGPTVYD-YAHIGHARTYVFFDVLRRYLEY-LGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFE 84 (300)
T ss_dssp TEEEEEEEEEBTTS---BHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCCC-CCCCcceeeeeeHHHHHHHHHH-cCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 456665 4644444 89999977754 3445665 5666644 389987 55543 36776654 45567777
Q ss_pred HHHHcCCCC
Q 015880 151 DIIACGFDV 159 (399)
Q Consensus 151 ~ilA~G~dp 159 (399)
++.++|+.+
T Consensus 85 dm~~Lnv~~ 93 (300)
T PF01406_consen 85 DMKALNVLP 93 (300)
T ss_dssp HHHHTT---
T ss_pred HHHHcCCCC
Confidence 778888764
No 111
>PLN02882 aminoacyl-tRNA ligase
Probab=73.88 E-value=2.6 Score=49.22 Aligned_cols=51 Identities=20% Similarity=0.050 Sum_probs=29.9
Q ss_pred eeccccCchhHHHHHHHHHHH---hCCCCcc-eeecccccCCCCCCCCCCCCCCCCcee
Q 015880 234 LIPCAIDQDPYFRMTRDVAPR---IGYHKPA-LIESSFFPALQGETGKMSASDPNSAIY 288 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r---~~~~kp~-~l~~~~lp~L~g~g~KMSKS~~nsaI~ 288 (399)
++.-|.||.... +.+-++.. ++.+.+. ++.+.++..=+ |+|||||.+| .|.
T Consensus 570 ~i~eG~Dq~RgW-f~~ll~~s~~l~~~~pfk~VivhG~vlde~--G~KMSKSlGN-vId 624 (1159)
T PLN02882 570 FVAEGLDQTRGW-FYTLMVLSTALFDKPAFKNLICNGLVLAED--GKKMSKSLKN-YPD 624 (1159)
T ss_pred EEEEecchhhhH-HHHHHHHHHHhcCCCCcceeEEccEEECCC--CCCcccCCCC-CCC
Confidence 678899997743 22222221 3444332 33455554445 5999999999 664
No 112
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=73.67 E-value=6 Score=44.39 Aligned_cols=90 Identities=22% Similarity=0.280 Sum_probs=52.6
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEec-CCCCCCccccchHHHH---hHHhHHhhCCCeEEEEecCccccccc
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDEKCMWK 134 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~-~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~D~~a~~~~ 134 (399)
..+.+-++|....|.+. .+++++..-| =||| .||+||.-... +..++++.-|-.|.--+| +|++
T Consensus 16 ~~W~e~~~Fe~~~d~~~-------~~Kfyvl~mfPYpSG-~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdaf--- 83 (814)
T COG0495 16 KRWEEAKVFEADEDSDK-------PEKFYVLVMFPYPSG-ALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAF--- 83 (814)
T ss_pred HHHHhcCCcccCCCCCC-------CCceEEEeCCCCCCC-CcccCccccccHHHHHHHHHHhcCCeecccCc-cccc---
Confidence 45666666766554331 0467776666 4787 79999966643 444556655666665565 5554
Q ss_pred CCCHHH------------HHHHHHHHHHHHHHcCCCCC
Q 015880 135 NLSVEE------------SQRLARENAKDIIACGFDVT 160 (399)
Q Consensus 135 ~~~~e~------------i~~~~~~~~~~ilA~G~dp~ 160 (399)
.++.+. +..|.....+++.++||+-+
T Consensus 84 GlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siD 121 (814)
T COG0495 84 GLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSID 121 (814)
T ss_pred CchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCccc
Confidence 133332 33444555567778887654
No 113
>PLN02381 valyl-tRNA synthetase
Probab=73.47 E-value=3.1 Score=48.21 Aligned_cols=54 Identities=22% Similarity=0.182 Sum_probs=33.7
Q ss_pred eeccccCchhHHHHHHHHHHH--hCCCCcc--eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMTRDVAPR--IGYHKPA--LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r--~~~~kp~--~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
++..|.||... =+.|-++.. +....|. ++.+.++..-+| +|||||.|| .|...|
T Consensus 611 ~~~~G~Dii~~-W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G--~KMSKS~GN-vIdP~~ 668 (1066)
T PLN02381 611 VLETGHDILFF-WVARMVMMGMQLGGDVPFRKVYLHPMIRDAHG--RKMSKSLGN-VIDPLE 668 (1066)
T ss_pred eeeecchhhhh-HHHHHHHHHHHhCCCCchHHheecceEECCCC--CCCCCCCCC-CCCHHH
Confidence 55688887643 233433333 3334553 445777777775 899999999 775433
No 114
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=72.73 E-value=10 Score=37.64 Aligned_cols=66 Identities=15% Similarity=0.030 Sum_probs=36.7
Q ss_pred CCCCCccccchHHHH---hHHhHHhhCCCeEEEE-ecCcccc--ccc----CCCHHHHHH-HHHHHHHHHHHcCCCCC
Q 015880 94 PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC--MWK----NLSVEESQR-LARENAKDIIACGFDVT 160 (399)
Q Consensus 94 PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~-I~D~~a~--~~~----~~~~e~i~~-~~~~~~~~ilA~G~dp~ 160 (399)
|+| .+||||+.+.. ++.++++..|..|... =.|.|.. ..+ ..+..++.+ +...+.+++.++|++++
T Consensus 11 ~ng-~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 87 (319)
T cd00814 11 VNG-VPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFD 87 (319)
T ss_pred CCC-CcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 346 79999988864 2223334445555443 2444422 111 356655444 44556667778898775
No 115
>PLN02224 methionine-tRNA ligase
Probab=72.70 E-value=2.9 Score=45.52 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=32.2
Q ss_pred eeccccCchhHHHHH-HHHHHHhCCCCcceee-cccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~-rdla~r~~~~kp~~l~-~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+-.+|.|-.+++-+. --+.-..|.+-|..+. +-++ .+. |+|||||.+| .|+..+
T Consensus 324 v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l-~~e--G~KMSKS~GN-~i~p~e 379 (616)
T PLN02224 324 LHLIGKDILRFHAVYWPAMLMSAGLELPKMVFGHGFL-TKD--GMKMGKSLGN-TLEPFE 379 (616)
T ss_pred eEEEeecccccHHHHHHHHHHHCCCCCCcEEEecccE-ecC--CccccccCCc-cCCHHH
Confidence 346788877754333 1111224555564333 4443 455 4899999999 888765
No 116
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=72.66 E-value=3.1 Score=29.59 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=26.4
Q ss_pred CCccHHHHHHhhCCCcCChHHHHHHHHhhCCC
Q 015880 26 GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRP 57 (399)
Q Consensus 26 ~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~ 57 (399)
..||+++++. ||-+|||++.-+-+..+.|++
T Consensus 16 ~kvdWd~wvS-f~GrPltdevK~a~k~i~~~~ 46 (49)
T PF06543_consen 16 PKVDWDKWVS-FDGRPLTDEVKEAMKLIFGKR 46 (49)
T ss_pred cccchHHhee-eCCeeCCHHHHHHHHHHHhhh
Confidence 3699999998 999999999888888877763
No 117
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=71.77 E-value=3 Score=47.70 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=29.6
Q ss_pred eeccccCchh-HHHHHHHHHHHhCCC---Cc-ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDP-YFRMTRDVAPRIGYH---KP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~-~~~l~rdla~r~~~~---kp-~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||-+ |.-..+-. ....++ -| ..+++.++.. + |+|||||.+| .|++.+
T Consensus 576 ~~~~GkDii~~H~~~~i~~-~~a~~~~~~~Pk~i~~~G~vl~-~--G~KMSKSlGN-vI~p~d 633 (938)
T TIGR00395 576 WRISGKDLIPNHLTFYIFH-HVAIFPEKFWPRGIVVNGYVML-E--GKKMSKSKGN-VLTLEQ 633 (938)
T ss_pred EEEEeeccccchHHHHHHH-HHHcCCccccCcEEEEeceEEe-C--CccccCcCCC-CCCHHH
Confidence 5678999976 22222111 111111 13 3344555543 5 5899999999 887655
No 118
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=71.55 E-value=14 Score=38.02 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=16.6
Q ss_pred cccccCCCCCCCCCCCCCCCCceeecC
Q 015880 265 SSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 265 ~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+.-+.... |+|||||.+| .|.+.+
T Consensus 251 H~g~l~~~--G~KMSKSlGN-~i~~~e 274 (384)
T PRK12418 251 HAGMIGLD--GEKMSKSRGN-LVFVSR 274 (384)
T ss_pred ECCEECCC--CCcccCcCCC-cCCHHH
Confidence 33334555 4899999999 777653
No 119
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=71.06 E-value=2.3 Score=43.02 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=41.1
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCC--cceeec--ccccCCCCCCC-CCCCCCCCCceeecCcHHHHHH
Q 015880 233 CLIPCAIDQDPYFRMTRDVAPRIGYHK--PALIES--SFFPALQGETG-KMSASDPNSAIYVTDSAKAIKN 298 (399)
Q Consensus 233 ~~v~~G~DQd~~~~l~rdla~r~~~~k--p~~l~~--~~lp~L~g~g~-KMSKS~~nsaI~L~D~~~~i~~ 298 (399)
++-.+|.||..|+.-...+++.+|+.. ....|. .++-+-+ |+ |||+-.++ .|.|+|=-++..+
T Consensus 241 ~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~--gk~~mstR~G~-~i~l~dllde~~~ 308 (354)
T PF00750_consen 241 IIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKD--GKVKMSTRKGN-VITLDDLLDEAVE 308 (354)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETT--BEESS-TTTTS-STBHHHHHHHHHH
T ss_pred EEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCC--CCccccCCCCC-ceEHHHHHHHHHH
Confidence 445899999999999999999999721 122232 2222233 34 79999888 9999874444443
No 120
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=70.62 E-value=3.6 Score=42.57 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=39.9
Q ss_pred EEEecCCCCCCccccchHHHH----hHHhHHhhCCCeEEEE--ecCcc-ccccc----CCCHHHHH-HHHHHHHHHHHHc
Q 015880 88 LYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEESQ-RLARENAKDIIAC 155 (399)
Q Consensus 88 iytG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i~-~~~~~~~~~ilA~ 155 (399)
..||-=|-+ .+||||+.+++ +.+|++ ..|..|..+ ++|-- +.+.+ ..+++++. .+.....+++.++
T Consensus 40 YvCGpTvY~-~~HIGhart~V~~Dvl~R~lr-~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~L 117 (411)
T TIGR03447 40 YVCGITPYD-ATHLGHAATYLTFDLVNRVWR-DAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEAL 117 (411)
T ss_pred EEeCCccCC-CcccccchHHHHHHHHHHHHH-hcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 345655555 89999977754 334444 446655544 34433 44332 36766644 4556666777778
Q ss_pred CCC
Q 015880 156 GFD 158 (399)
Q Consensus 156 G~d 158 (399)
|+.
T Consensus 118 ni~ 120 (411)
T TIGR03447 118 RVL 120 (411)
T ss_pred CCC
Confidence 764
No 121
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=70.27 E-value=4.7 Score=47.29 Aligned_cols=52 Identities=25% Similarity=0.160 Sum_probs=30.1
Q ss_pred eeccccCchhHHHHH-HHHHHHhCCCCc--ceeecccccCCCCCCCCCCCCCCCCcee
Q 015880 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIY 288 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~-rdla~r~~~~kp--~~l~~~~lp~L~g~g~KMSKS~~nsaI~ 288 (399)
++.-|.||....-.+ .-+.--+....| .++.+.++..-+| +|||||.+| .|.
T Consensus 676 ~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG--~KMSKSlGN-vID 730 (1205)
T PTZ00427 676 FIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDG--KKMSKRLKN-YPD 730 (1205)
T ss_pred EEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCC--CCcccCCCC-CCC
Confidence 678899997733222 111111222344 2344566655564 899999999 653
No 122
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=69.85 E-value=8.7 Score=38.08 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=34.9
Q ss_pred CCCCCccccchHHHH----hHHhHHhhCCCeEEE-EecCcccc-cc----c-CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 015880 94 PSSEALHLGHLVPFM----FTKYLQDAFKVPLVI-QLTDDEKC-MW----K-NLSVEE-SQRLARENAKDIIACGFDVT 160 (399)
Q Consensus 94 PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I-~I~D~~a~-~~----~-~~~~e~-i~~~~~~~~~~ilA~G~dp~ 160 (399)
|+| .+||||+.+.+ +.+++.. -|..|.. .=.|.+.. +. + ..+..+ +.++..+..+++.++|+.++
T Consensus 11 ~ng-~~HiGH~~~~v~~Dv~~R~lr~-~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 11 PSG-ALHVGHVRTYTIGDIIARYKRM-QGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCC-CccccchHHHHHHHHHHHHHHH-cCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 455 89999988764 3333443 3544433 23444421 11 1 244444 33444566667778888654
No 123
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=69.21 E-value=1.9 Score=42.67 Aligned_cols=50 Identities=24% Similarity=0.159 Sum_probs=22.3
Q ss_pred cccCc-hhHHHHHHHHHHHhCCCCcc---eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 237 CAIDQ-DPYFRMTRDVAPRIGYHKPA---LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 237 ~G~DQ-d~~~~l~rdla~r~~~~kp~---~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+|+|- -||.+=-+-.++.... +|. -+|+-+|.. . |+|||||.+| .|.+.|
T Consensus 212 GG~DL~FPHHENEiAqs~a~~g-~~~a~~W~H~g~l~~-~--g~KMSKSlgN-~~~i~d 265 (300)
T PF01406_consen 212 GGIDLIFPHHENEIAQSEAATG-KPFANYWMHNGHLNV-D--GEKMSKSLGN-FITIRD 265 (300)
T ss_dssp EEGGGTTTHHHHHHHHHHHHHS-S-SEEEEEEE--EEE-T--TCE--TTTT----BHHH
T ss_pred cccccCCCCccchHHHHHHhhC-chHHHHHHHHHHHhh-c--CccccccCCC-EEEHHH
Confidence 44442 3566544444444332 332 244544433 4 4899999998 888755
No 124
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=68.56 E-value=10 Score=41.83 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=20.7
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHh
Q 015880 347 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 380 (399)
Q Consensus 347 ~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~ 380 (399)
..++|. ...-.-+.++.+|+..++--.+.++.-
T Consensus 777 ~LrtGp-~~~FaDrvf~nemN~~i~~t~~aye~~ 809 (1080)
T KOG0437|consen 777 SLRTGP-ASTFADRVFENEMNALIAKTERAYEDT 809 (1080)
T ss_pred hhccCc-hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345552 222456778888888887776666643
No 125
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=68.16 E-value=10 Score=37.38 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=22.6
Q ss_pred eeEEEec-CCCCCCccccchHHHH----hHHhHHhhCCCeEEE-EecCccc
Q 015880 86 FYLYTGR-GPSSEALHLGHLVPFM----FTKYLQDAFKVPLVI-QLTDDEK 130 (399)
Q Consensus 86 ~~iytG~-~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I-~I~D~~a 130 (399)
++|.+|. -|+| .+||||+.+.+ +.+++... |..|.. .=.|.|.
T Consensus 2 ~~i~~~pP~~~g-~~HiGH~~~~i~~D~i~R~~r~~-G~~v~~~~g~D~~g 50 (312)
T cd00668 2 FYVTTPPPYANG-SLHLGHALTHIIADFIARYKRMR-GYEVPFLPGWDTHG 50 (312)
T ss_pred EEEecCCCCCCC-CcchhHHHHHHHHHHHHHHHHhC-CCCCCCCCccCCCC
Confidence 3344443 2455 89999988753 34444433 444433 2345553
No 126
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=67.79 E-value=4.3 Score=46.74 Aligned_cols=52 Identities=25% Similarity=0.202 Sum_probs=32.1
Q ss_pred eeccccCchhHHHHHHHHHHHh--CCCCcc--eeecccccCCCCCCCCCCCCCCCCceee
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRI--GYHKPA--LIESSFFPALQGETGKMSASDPNSAIYV 289 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~--~~~kp~--~l~~~~lp~L~g~g~KMSKS~~nsaI~L 289 (399)
+...|.||-.+ =++|-++.-+ ..+.|. ++.+.++..-+| +|||||.|| .|..
T Consensus 541 ~~~~G~Dii~~-W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G--~KMSKSlGN-vIdP 596 (995)
T PTZ00419 541 LLETGSDILFF-WVARMVMMSLHLTDKLPFKTVFLHAMVRDSQG--EKMSKSKGN-VIDP 596 (995)
T ss_pred EEEechhHHhH-HHHHHHHHHHHhcCCCChHHHhccceEECCCC--CCcccCCCC-cCCh
Confidence 56778887652 2334444333 224563 445677766665 899999999 6643
No 127
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=66.68 E-value=19 Score=38.23 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=42.4
Q ss_pred CceeEE-EecCCCCCCccccchHHHH----hHHhHHhhCCCeEEEE--ecCc----------c-ccccc----CCCHHH-
Q 015880 84 EKFYLY-TGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDD----------E-KCMWK----NLSVEE- 140 (399)
Q Consensus 84 ~~~~iy-tG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~--I~D~----------~-a~~~~----~~~~e~- 140 (399)
+.+.+| ||--+-+ .+||||+.+++ +.+||+ ..|..|..+ |+|. . +.+.+ ..++.+
T Consensus 22 ~~v~mYvCGpTvy~-~~HiGhar~~v~~Dvl~R~l~-~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~ 99 (490)
T PRK14536 22 GHVRLYGCGPTVYN-YAHIGNLRTYVFQDTLRRTLH-FLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEI 99 (490)
T ss_pred CceEEEeeCCccCC-CcccchhHHHHHHHHHHHHHH-hcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHH
Confidence 345555 4543335 89999976643 344455 446544433 6776 2 33221 255555
Q ss_pred HHHHHHHHHHHHHHcCCCC
Q 015880 141 SQRLARENAKDIIACGFDV 159 (399)
Q Consensus 141 i~~~~~~~~~~ilA~G~dp 159 (399)
+.++.....+++.++|+.+
T Consensus 100 a~~~~~~f~~d~~~Lni~~ 118 (490)
T PRK14536 100 AAHYTAAFFRDTARLNIER 118 (490)
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 3445567777888888865
No 128
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=66.59 E-value=18 Score=37.44 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=17.2
Q ss_pred ecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 264 ESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 264 ~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
.+..+....| +|||||.+| .|.+.+
T Consensus 277 ~H~g~l~~~G--~KMSKSlGN-~i~~~d 301 (411)
T TIGR03447 277 VHAGMIGLDG--EKMSKSLGN-LVFVSK 301 (411)
T ss_pred EECCEECcCC--CCccCcCCC-CCCHHH
Confidence 3444445564 899999998 777643
No 129
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.17 E-value=5 Score=43.18 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=32.4
Q ss_pred eeccccCchhHHHHH-HHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~-rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+-.+|.|--.++-+- =-+.--.+.+.|..+.+.-.-.+.| +|||||.+| +||..+
T Consensus 291 vhfIGKDii~FHav~wPamL~~~~~~lP~~i~ahg~l~~~G--~KmSKSrG~-~V~~~~ 346 (558)
T COG0143 291 VHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGFLTLEG--QKMSKSRGN-VVDPDE 346 (558)
T ss_pred EEEeccccCcchhhHHHHHHHhCCCCCCCEEEeeeeEEECC--ccccccCCc-EEeHHH
Confidence 336788866665544 1111223444565555333334554 899999999 999665
No 130
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=65.94 E-value=2.8 Score=47.38 Aligned_cols=14 Identities=43% Similarity=0.401 Sum_probs=11.6
Q ss_pred CCCCCCCCCceeecC
Q 015880 277 KMSASDPNSAIYVTD 291 (399)
Q Consensus 277 KMSKS~~nsaI~L~D 291 (399)
|||||.+| .|.+.|
T Consensus 604 KMSKS~GN-~v~p~~ 617 (842)
T TIGR00396 604 KMSKSKGN-GIDPQE 617 (842)
T ss_pred hhhhcCCC-cCCHHH
Confidence 99999999 776654
No 131
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=65.87 E-value=21 Score=37.85 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=42.4
Q ss_pred ceeEEEecCCC-CCCccccchHHHH----hHHhHHhhCCCeEEE--EecCc----------c-ccccc----CCCHHHH-
Q 015880 85 KFYLYTGRGPS-SEALHLGHLVPFM----FTKYLQDAFKVPLVI--QLTDD----------E-KCMWK----NLSVEES- 141 (399)
Q Consensus 85 ~~~iytG~~PT-g~slHlGhlv~~~----~~~~lQ~~~~~~v~I--~I~D~----------~-a~~~~----~~~~e~i- 141 (399)
.+.+|+ -+|| -+.+||||+.+++ +.+||+. .|..|.. -|+|. . +...+ ..++.++
T Consensus 21 ~v~mY~-CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~-~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a 98 (481)
T PRK14534 21 DVKVYA-CGPTVYNYAHIGNFRTYIFEDLLIKSLRL-LKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEIS 98 (481)
T ss_pred ceEEEe-CCCCCCCCCCccchhHHHHHHHHHHHHHH-cCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHH
Confidence 345553 3566 2479999977653 3445554 4544443 36776 2 33332 3566554
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 015880 142 QRLARENAKDIIACGFDVT 160 (399)
Q Consensus 142 ~~~~~~~~~~ilA~G~dp~ 160 (399)
..+.....+++-++|+.+.
T Consensus 99 ~~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 99 RFFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 4455666777788887643
No 132
>PLN02610 probable methionyl-tRNA synthetase
Probab=64.51 E-value=4.4 Score=45.52 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=32.2
Q ss_pred eeccccCchhHHHHH---HHHHHHhCCCCcceee-cccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMT---RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~---rdla~r~~~~kp~~l~-~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+-.+|.|--.++-+. --++.-..++.|..+. +-++ .+. |+|||||.+| .||..+
T Consensus 304 ~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l-~~e--G~KMSKS~GN-vV~p~~ 361 (801)
T PLN02610 304 YQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYL-NYE--GGKFSKSKGV-GVFGND 361 (801)
T ss_pred EEEEeeecchhHHHHHHHHHHhCCCCcCCCCEEEeccCE-ecC--CceecCcCCc-ccCHHH
Confidence 447899976666554 1222222233555444 3333 345 4899999999 998765
No 133
>PLN02610 probable methionyl-tRNA synthetase
Probab=64.40 E-value=20 Score=40.35 Aligned_cols=76 Identities=8% Similarity=0.019 Sum_probs=43.7
Q ss_pred CceeEEEecC-CCCCCccccchHHH-H---hHHhHHhhCCCeEEEEec-Ccccccc------cCCCHHH-HHHHHHHHHH
Q 015880 84 EKFYLYTGRG-PSSEALHLGHLVPF-M---FTKYLQDAFKVPLVIQLT-DDEKCMW------KNLSVEE-SQRLARENAK 150 (399)
Q Consensus 84 ~~~~iytG~~-PTg~slHlGhlv~~-~---~~~~lQ~~~~~~v~I~I~-D~~a~~~------~~~~~e~-i~~~~~~~~~ 150 (399)
++++|-|.+= |+| .|||||+.+. + ...++++.-|..+..+-| |.|..-. ...+..+ +.++......
T Consensus 17 ~~~~ITt~~pY~Ng-~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~ 95 (801)
T PLN02610 17 RNILITSALPYVNN-VPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKE 95 (801)
T ss_pred CCEEEeCCCCCCCC-CcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3566666653 445 8999999852 2 334455555766666554 5454321 1355555 3444455555
Q ss_pred HHHHcCCCCC
Q 015880 151 DIIACGFDVT 160 (399)
Q Consensus 151 ~ilA~G~dp~ 160 (399)
.+.++|++.+
T Consensus 96 ~~~~l~i~~D 105 (801)
T PLN02610 96 VYDWFDISFD 105 (801)
T ss_pred HHHHcCCccc
Confidence 6677887765
No 134
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.10 E-value=61 Score=36.61 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=15.9
Q ss_pred cccccCCCCCCCCCCCCCCCCceeecC
Q 015880 265 SSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 265 ~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
.-++.+-. |+|||||.+| .|-+++
T Consensus 569 qGmVl~~~--g~KMSKSKgN-~v~p~~ 592 (814)
T COG0495 569 QGMVLGEE--GEKMSKSKGN-VVDPEE 592 (814)
T ss_pred cceEEecC--CCccccccCC-CCCHHH
Confidence 34444434 4899999999 775544
No 135
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=61.66 E-value=23 Score=39.02 Aligned_cols=75 Identities=28% Similarity=0.415 Sum_probs=44.0
Q ss_pred CceeEEEecCCC-CCCccccchHH---HH-hHHhHHhhCCCeEEEE--ecCcc-ccccc----CCC-HHH-HHHHHHHHH
Q 015880 84 EKFYLYTGRGPS-SEALHLGHLVP---FM-FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLS-VEE-SQRLARENA 149 (399)
Q Consensus 84 ~~~~iytG~~PT-g~slHlGhlv~---~~-~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~-~e~-i~~~~~~~~ 149 (399)
+.+.+|+ .+|| -+.+||||+-. +. +.+||++.+|..|..+ |+|.- +.+.+ .++ +.+ ++.+..+..
T Consensus 59 ~~v~~Y~-CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~ 137 (651)
T PTZ00399 59 RQVRWYT-CGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFF 137 (651)
T ss_pred CeeEEEE-eCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3444443 3466 24899999655 33 4455665666555443 66654 44433 356 555 444556777
Q ss_pred HHHHHcCCCC
Q 015880 150 KDIIACGFDV 159 (399)
Q Consensus 150 ~~ilA~G~dp 159 (399)
+++.++|+.+
T Consensus 138 ~d~~~Lni~~ 147 (651)
T PTZ00399 138 EDMKALNVRP 147 (651)
T ss_pred HHHHHcCCCC
Confidence 7888888754
No 136
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=61.37 E-value=17 Score=36.48 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=23.6
Q ss_pred ceeEEEecC-CCCCCccccchHHHH---hHHhHHhhCCCeEEEE-ecCcc
Q 015880 85 KFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDE 129 (399)
Q Consensus 85 ~~~iytG~~-PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~-I~D~~ 129 (399)
+|++.+|-= |+| .+||||+.+.. ++.++++..|..|... =.|.|
T Consensus 2 ~f~i~~~pP~vnG-~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~h 50 (338)
T cd00818 2 EFVFHDGPPYANG-LPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCH 50 (338)
T ss_pred CeEEecCCCCCCC-CchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCC
Confidence 345555432 345 89999988753 2333344445555443 34543
No 137
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=61.03 E-value=21 Score=39.17 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=39.8
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEec-CCCCCCccccchHHH---HhHHhHHhhCCCeEEEEecCcccc
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPF---MFTKYLQDAFKVPLVIQLTDDEKC 131 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~-~PTg~slHlGhlv~~---~~~~~lQ~~~~~~v~I~I~D~~a~ 131 (399)
+..+.+|..+.. +-+ .++++ ||++-| -||| .||+||.... ..+.++|+.-|-.|+=-+| |.||
T Consensus 40 ~~~~~~~~~~~~-~~d------~sk~K-YiLsMFPYPSG-~LHiGHvRVYTIsD~laRf~rm~GynVihPMG-WDaF 106 (876)
T KOG0435|consen 40 KQYLKDGFPFSK-DSD------KSKKK-YILSMFPYPSG-ALHIGHVRVYTISDILARFYRMKGYNVIHPMG-WDAF 106 (876)
T ss_pred HHHHhcCCcccc-ccc------cCCCc-eEEEecCCCCC-cccccceEEEEehHHHHHHHHhcCceeecCCc-cccc
Confidence 456778887774 211 24344 888888 4888 7999996653 3566788765555443344 4444
No 138
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.70 E-value=10 Score=42.73 Aligned_cols=51 Identities=24% Similarity=0.201 Sum_probs=32.2
Q ss_pred eeccccCchhHHHHHHHHHHHh--CCCCcc--eeecccccCCCCCCCCCCCCCCCCcee
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRI--GYHKPA--LIESSFFPALQGETGKMSASDPNSAIY 288 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~--~~~kp~--~l~~~~lp~L~g~g~KMSKS~~nsaI~ 288 (399)
+.+.|-| -=++=.+|-+..-+ ....|. +..+.++-.-+ |.|||||.|| .|-
T Consensus 481 llvtG~D-IIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~--G~KMSKS~GN-vID 535 (877)
T COG0525 481 LLVTGHD-IIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQ--GRKMSKSKGN-VID 535 (877)
T ss_pred cccccch-hhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCC--CCCCcccCCC-cCC
Confidence 5688988 55555566666553 334563 22345555555 5999999999 664
No 139
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=60.42 E-value=21 Score=36.44 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=24.6
Q ss_pred eeEEEecC-CCCCCccccchHHHH---hHHhHHhhCCCeEEEEe-cCcc
Q 015880 86 FYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDE 129 (399)
Q Consensus 86 ~~iytG~~-PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I-~D~~ 129 (399)
+++.+|.= |+| .|||||+.+.. +..++++.-|..|.... .|.|
T Consensus 3 f~i~~~pPy~nG-~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~h 50 (382)
T cd00817 3 FVIDTPPPNVTG-SLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHA 50 (382)
T ss_pred EEEecCCCCCCC-cchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCC
Confidence 44444442 445 89999988764 33334555566655543 4554
No 140
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=60.01 E-value=25 Score=38.83 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=43.9
Q ss_pred CceeEEEecCCC-CCCccccchHHHH---h-HHhHHhhCCCeEEEE--ecCcc-ccccc----CCCHHHH-HHHHHHHHH
Q 015880 84 EKFYLYTGRGPS-SEALHLGHLVPFM---F-TKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAK 150 (399)
Q Consensus 84 ~~~~iytG~~PT-g~slHlGhlv~~~---~-~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i-~~~~~~~~~ 150 (399)
+.+.+|+ -+|| -+.+||||+.+++ . .+||+. .|..|..+ ++|-- +.+.+ ..++.++ ..+.....+
T Consensus 247 ~~V~mYv-CGPTVYd~~HIGHaRt~V~~DVL~R~Lr~-~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~ 324 (699)
T PRK14535 247 ENVRMYV-CGMTVYDYCHLGHARVMVVFDMIARWLRE-CGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHE 324 (699)
T ss_pred CceEEEe-cCCcCCCCCcccchhHHHHHHHHHHHHHH-cCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3455553 3466 2489999977653 3 344544 46555443 55544 44432 3666664 445567777
Q ss_pred HHHHcCCCCC
Q 015880 151 DIIACGFDVT 160 (399)
Q Consensus 151 ~ilA~G~dp~ 160 (399)
++.++|+.+.
T Consensus 325 d~~~LnI~~p 334 (699)
T PRK14535 325 DADALGVLRP 334 (699)
T ss_pred HHHHcCCCCC
Confidence 8888888653
No 141
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=59.55 E-value=5 Score=44.04 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=18.6
Q ss_pred ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 261 ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 261 ~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
..+|+.+| .+. |+|||||.+| .|.+.|
T Consensus 302 y~~H~G~L-~i~--G~KMSKSLGN-fItp~d 328 (651)
T PTZ00399 302 YFLHSGHL-HIK--GLKMSKSLKN-FITIRQ 328 (651)
T ss_pred EEEEEEEE-Eec--cchhhhcCCC-cccHHH
Confidence 34454553 345 4899999999 887765
No 142
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.44 E-value=36 Score=36.81 Aligned_cols=105 Identities=25% Similarity=0.370 Sum_probs=53.0
Q ss_pred HHHHh-CCceeEEEec--CCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHH
Q 015880 78 DAYEK-GEKFYLYTGR--GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDII 153 (399)
Q Consensus 78 ~~~~~-~~~~~iytG~--~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~il 153 (399)
++++. |.+ ++|-| +|-| .|||||.-.+. +++ +.++.|...++- =|++ ++|.=.+-.-+-|+++.
T Consensus 240 ~HL~~TGGk--V~TRFPPEPNG-~LHIGHaKAIn-vNFgyAk~~~G~cyLR-fDDT-------NPEkEee~yf~sI~e~V 307 (764)
T KOG1148|consen 240 EHLERTGGK--VVTRFPPEPNG-ILHIGHAKAIN-VNFGYAKAHGGVCYLR-FDDT-------NPEKEEEEYFESIKEMV 307 (764)
T ss_pred HHHHhhCCe--eEEeCCCCCCc-eeeecchhhee-echhhhhhhCCeEEEe-cCCC-------CcchhhHHHHHHHHHHH
Confidence 44443 443 66666 5667 89999987774 555 555544444442 2332 22211111223444454
Q ss_pred H-cCCCCCceEEEeccccCccchHHHHHHHHh-------hcCHHHHHHhhCC
Q 015880 154 A-CGFDVTKTFIFSDFDYVGGAFYKNMVKVAK-------CVTYNKVVGIFGF 197 (399)
Q Consensus 154 A-~G~dp~kt~i~~~s~~~~~~~~~~~~~l~~-------~~t~~~~~~~~g~ 197 (399)
+ +|+.|=|+ -.+|++.. .+|.-...+-+ |.|..+++..-|+
T Consensus 308 ~WLG~~P~kv--TysSDyFd-qLy~~av~LIrkG~AYVcHqt~eEik~~rg~ 356 (764)
T KOG1148|consen 308 AWLGFEPYKV--TYSSDYFD-QLYELAVELIRKGKAYVCHQTAEEIKERRGF 356 (764)
T ss_pred HHhCCCceee--ecchhHHH-HHHHHHHHHHhcCceeEEeccHHHHHhhcCC
Confidence 4 69998544 34556653 34443333222 3455566654443
No 143
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=57.03 E-value=5.7 Score=44.71 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=26.9
Q ss_pred eeccccCch-hHHHHHHHHH---HHhC---CCCc--ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQD-PYFRMTRDVA---PRIG---YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd-~~~~l~rdla---~r~~---~~kp--~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||. -|+-.+|=.. ...+ ...| .++++.++ |||||.+| .|...+
T Consensus 526 ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v--------KMSKS~GN-~i~p~~ 583 (805)
T PRK00390 526 QYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV--------KMSKSKGN-VVDPDD 583 (805)
T ss_pred EEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE--------EeCCCCCC-CCCHHH
Confidence 567898984 2333333221 1111 2344 23445555 99999999 676544
No 144
>PLN02946 cysteine-tRNA ligase
Probab=52.87 E-value=5.3 Score=42.95 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=18.6
Q ss_pred eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 262 LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 262 ~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
-+|+-+|. +.| +|||||.+| .|.+.|
T Consensus 311 W~H~G~v~-~~G--~KMSKSlGN-~itl~d 336 (557)
T PLN02946 311 WIHNGFVT-VDS--EKMSKSLGN-FFTIRQ 336 (557)
T ss_pred eeEeeEEE-eCC--CCcCCcCCC-cCCHHH
Confidence 35666665 664 899999998 776644
No 145
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=51.85 E-value=9.6 Score=40.40 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=17.6
Q ss_pred eecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 263 IESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 263 l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+|+-++ .+.| +|||||.+| .|++.|
T Consensus 268 ~h~g~l-~~~g--~KMSKSlGN-~itl~d 292 (490)
T PRK14536 268 LHHEFL-LMNK--GKMSKSAGQ-FLTLSS 292 (490)
T ss_pred EEcCEE-eecC--ccccccCCC-cccHHH
Confidence 344333 4554 899999998 888855
No 146
>PLN02563 aminoacyl-tRNA ligase
Probab=50.82 E-value=36 Score=39.27 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=42.9
Q ss_pred CCceeEEEecCCCCCC-ccccchHHHH---hHHhHHhhCCCeEEEEecCcc-ccc-cc-----CCCH-HHHHHHHHHHHH
Q 015880 83 GEKFYLYTGRGPSSEA-LHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE-KCM-WK-----NLSV-EESQRLARENAK 150 (399)
Q Consensus 83 ~~~~~iytG~~PTg~s-lHlGhlv~~~---~~~~lQ~~~~~~v~I~I~D~~-a~~-~~-----~~~~-e~i~~~~~~~~~ 150 (399)
+.++++.+|+=...+. ||+||+.... +..++++.-|..|...+|=++ +.- .. ..+. +-+.++.....+
T Consensus 109 k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~ 188 (963)
T PLN02563 109 KPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRS 188 (963)
T ss_pred CCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHH
Confidence 3568888888322334 9999988753 334456555766666555443 331 11 1222 223445556666
Q ss_pred HHHHcCCC
Q 015880 151 DIIACGFD 158 (399)
Q Consensus 151 ~ilA~G~d 158 (399)
++..+|+.
T Consensus 189 q~~~lG~s 196 (963)
T PLN02563 189 QLKSLGFS 196 (963)
T ss_pred HHHHhCcE
Confidence 77778864
No 147
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=50.54 E-value=6.4 Score=43.25 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=18.3
Q ss_pred eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 262 LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 262 ~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
-+|+-++. +.| +|||||.+| .|.+.|
T Consensus 496 WmHnG~V~-vdG--eKMSKSLGN-~it~~d 521 (699)
T PRK14535 496 WLHNGFIR-VDG--EKMSKSLGN-FFTIRE 521 (699)
T ss_pred EEECCeEe-eCC--CccCCCCCC-cCCHHH
Confidence 34556655 564 899999998 676654
No 148
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=49.38 E-value=33 Score=36.35 Aligned_cols=74 Identities=30% Similarity=0.464 Sum_probs=44.0
Q ss_pred hCCceeEEEecCCC-CCCccccc---hHHHHhHH-hHHhhCCCeEEEE--ecCcc-ccccc---------CCCHHHH-HH
Q 015880 82 KGEKFYLYTGRGPS-SEALHLGH---LVPFMFTK-YLQDAFKVPLVIQ--LTDDE-KCMWK---------NLSVEES-QR 143 (399)
Q Consensus 82 ~~~~~~iytG~~PT-g~slHlGh---lv~~~~~~-~lQ~~~~~~v~I~--I~D~~-a~~~~---------~~~~e~i-~~ 143 (399)
.++.+..|+ -+|| -++-|+|| ||.+.+++ .|++.+|..|... |+|.. +.+.| .++++++ ..
T Consensus 52 ~~~~v~wY~-CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~ 130 (586)
T KOG2007|consen 52 NGNKVTWYI-CGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCY 130 (586)
T ss_pred CCCeEEEEE-ecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHH
Confidence 345566665 4688 46899999 66665444 5898888877664 77755 44432 2455554 22
Q ss_pred HHHHHHHHHHHcC
Q 015880 144 LARENAKDIIACG 156 (399)
Q Consensus 144 ~~~~~~~~ilA~G 156 (399)
+-.+...|..++.
T Consensus 131 ~e~eF~~DM~~Ln 143 (586)
T KOG2007|consen 131 YEEEFLQDMAALN 143 (586)
T ss_pred HHHHHHHHHHHhC
Confidence 2344455555543
No 149
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=46.74 E-value=71 Score=29.14 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=39.9
Q ss_pred EEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcc-cccc-cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 015880 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCMW-KNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (399)
Q Consensus 88 iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~-a~~~-~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~ 165 (399)
+|.|.- +.+|+||+..+. .-++. ++ .++|.|+... .... +..+.++-.++.+..+. ..|++.+++.|.
T Consensus 3 l~~GrF---~P~H~GHl~~i~--~a~~~-~~-~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~---~~~~~~~rv~i~ 72 (181)
T cd02168 3 VYIGRF---QPFHNGHLAVVL--IALEK-AK-KVIILIGSARTARNIKNPWTSEEREVMIEAALS---DAGADLARVHFR 72 (181)
T ss_pred EEeecc---CCCCHHHHHHHH--HHHHH-CC-eEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHh---ccCCCcceEEEE
Confidence 555633 468999986663 22343 45 6666665542 2221 23677776655543332 358888888766
Q ss_pred e
Q 015880 166 S 166 (399)
Q Consensus 166 ~ 166 (399)
.
T Consensus 73 p 73 (181)
T cd02168 73 P 73 (181)
T ss_pred e
Confidence 4
No 150
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.57 E-value=18 Score=40.11 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=34.0
Q ss_pred eeccccCch-hHHHHH--HHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHH
Q 015880 234 LIPCAIDQD-PYFRMT--RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 299 (399)
Q Consensus 234 ~v~~G~DQd-~~~~l~--rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~K 299 (399)
+..=|.||. .||.-. --+|.+-..|=-..+.+-|.-.=. |.|||||.|| .| +|+.|-+.
T Consensus 569 v~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE~--G~KMSKSlGN-Vi----dP~~v~~G 630 (937)
T KOG0433|consen 569 VYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDEN--GNKMSKSLGN-VV----DPTMVTDG 630 (937)
T ss_pred eEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEecCC--ccchhhcccC-cC----CHHHHhCC
Confidence 456788885 466433 445544222111234455554444 5899999999 55 46666554
No 151
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=45.97 E-value=25 Score=39.58 Aligned_cols=60 Identities=20% Similarity=0.298 Sum_probs=35.1
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceeEEEec-CCCCCCccccchHHHH---hHHhHHhhCCCeEEEEecCc
Q 015880 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDD 128 (399)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~-~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~D~ 128 (399)
.+.+.|+|....+ .+++++++.+|. -|+| .|||||+.... +..++++.-|..|....|=+
T Consensus 22 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D 85 (800)
T PRK13208 22 IWEEEGTYKFDPD--------ERKPVYSIDTPPPTVSG-SLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWD 85 (800)
T ss_pred HHHHCCCcccccc--------cCCCcEEEecCcCCCCC-CccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcC
Confidence 4566677654322 123567777743 4567 79999988754 33334555566665554433
No 152
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=44.80 E-value=14 Score=39.16 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=17.8
Q ss_pred eecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 263 IESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 263 l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+|+-++ .+.| +|||||.+| .|+|.|
T Consensus 268 ~H~g~l-~~~g--~KMSKSlGN-~i~l~d 292 (481)
T PRK14534 268 VHGEFL-IMEY--EKMSKSNNN-FITIKD 292 (481)
T ss_pred EEecEE-EecC--ceecccCCC-cccHHH
Confidence 444444 3454 899999998 888855
No 153
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=43.85 E-value=2e+02 Score=28.29 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=33.5
Q ss_pred eccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 235 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 235 v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
.++=.| -|-+.+.|.+++-++++ ..++-.+++..-+| =-||+- .+||+.
T Consensus 147 yFGeKD-~QQl~vIr~mV~DL~~~-VeIv~vptVRe~DG--LA~SSR----N~YLs~ 195 (285)
T COG0414 147 YFGEKD-YQQLAVIRRMVADLNLP-VEIVGVPTVREEDG--LALSSR----NVYLSA 195 (285)
T ss_pred eeccch-HHHHHHHHHHHHHcCCC-eEEEecceeEcCCc--cchhhc----cccCCH
Confidence 345556 78888889999999974 33445788888776 345543 467765
No 154
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=42.21 E-value=64 Score=35.06 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=25.3
Q ss_pred HhCCceeEEEec-CCCCCCccccchHHHH---hHHhHHhhCCCeEEEEe
Q 015880 81 EKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL 125 (399)
Q Consensus 81 ~~~~~~~iytG~-~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I 125 (399)
.++++|++..|. -+|| .||+||.+... +..++++.-|..|....
T Consensus 20 ~~~~~f~i~~~PPy~nG-~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~ 67 (601)
T PF00133_consen 20 KNKPKFFIHDPPPYANG-DLHIGHALNKTIKDIIARYKRMQGYNVLFPP 67 (601)
T ss_dssp TTSGEEEEEE---BTSS-S-BHHHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC-cccHHHHHHHHHHHHHHHHHHhCCcEeCCCC
Confidence 345667777775 2356 89999998864 23334555566665543
No 155
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=42.11 E-value=46 Score=37.80 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=37.6
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEecC-CCCCCccccchHHHH---hHHhHHhhCCCeEEEEecCcc
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~-PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (399)
..+.+.|+|....+ ..++++++++|.= +|| .||+||++... +..++++.-|..|....|=+|
T Consensus 16 ~~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 81 (861)
T TIGR00422 16 KKWEKSGFFKPDGN--------SNKPPFCIDIPPPNVTG-SLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDH 81 (861)
T ss_pred HHHHHCCCcccCcc--------cCCCeEEEEeCCCCCCC-CCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCc
Confidence 35666787765432 2346688888753 456 89999988753 333355554665555445444
No 156
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=39.57 E-value=22 Score=35.37 Aligned_cols=69 Identities=14% Similarity=0.274 Sum_probs=41.0
Q ss_pred CCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 015880 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (399)
.||| .|||||+..++ .+| +.+..|..+++-|=|.-. ..... .....++.++..+|++++ --++.||+-.
T Consensus 9 sPtG-~lHiG~~r~al-~n~~~Ar~~~G~~iLRieDtD~----~R~~~---~~~~~i~~~L~wlGl~~D-~~~~~QS~r~ 78 (314)
T PF00749_consen 9 SPTG-YLHIGHARTAL-LNYLFARKYGGKFILRIEDTDP----ERCRP---EFYDAILEDLRWLGLEWD-YGPYYQSDRL 78 (314)
T ss_dssp -SSS-S-BHHHHHHHH-HHHHHHHHTTSEEEEEEETSST----TTCHH---HHHHHHHHHHHHHT---S-TCEEEGGGGH
T ss_pred CCCC-CcccchhHHHH-HHHHHHhccCceEEEecccccc----ccchh---hHHHHHHhheeEEEEecC-CeEEeHHHHH
Confidence 4778 79999999995 677 556678888877755321 12222 333456667777899886 3345577654
No 157
>PLN02943 aminoacyl-tRNA ligase
Probab=37.90 E-value=42 Score=38.71 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=37.6
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEe-cCCCCCCccccchHHHH---hHHhHHhhCCCeEEEEecCcc
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG-~~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (399)
..+.+.|+|....+ .++++|.+.+| =-+|| .||+||.+... ++.++++.-|..+....|=+|
T Consensus 71 ~~W~~~~~f~~~~~--------~~~~~f~i~~pPP~~tG-~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 136 (958)
T PLN02943 71 NWWESQGYFKPNFD--------RGGDPFVIPMPPPNVTG-SLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDH 136 (958)
T ss_pred HHHHHCCCcccCcc--------cCCCCEEEecCCCCCCC-chhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCc
Confidence 35666777766432 23456888777 56687 79999988753 233344444665555444443
No 158
>PLN02381 valyl-tRNA synthetase
Probab=35.46 E-value=50 Score=38.56 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=37.8
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEecC-CCCCCccccchHHHH---hHHhHHhhCCCeEEEEecCcc
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~-PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (399)
..+.+.|+|....+ ..+++|++.+|.= +|| .||+||.+... ++.++++.-|..|....|=+|
T Consensus 111 ~~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~ 176 (1066)
T PLN02381 111 AWWEKSGYFGADAK--------SSKPPFVIVLPPPNVTG-ALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDH 176 (1066)
T ss_pred HHHHHCCCccCCcc--------CCCCcEEEEeCCCCCCC-CccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCC
Confidence 45667788765321 2345688888863 455 89999988753 333455555666655544443
No 159
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=33.98 E-value=41 Score=36.25 Aligned_cols=41 Identities=20% Similarity=0.394 Sum_probs=26.7
Q ss_pred eEEEecCCCCCCccccchHHHH----hHHhHHhhCCCeEEE--EecCcc
Q 015880 87 YLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVI--QLTDDE 129 (399)
Q Consensus 87 ~iytG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I--~I~D~~ 129 (399)
.=|++--|++ .||+||+-..+ +.+++. ..|..|.- -|+||=
T Consensus 116 ve~~spn~~~-~~hiGh~r~~~~gd~l~r~~~-~~g~~v~r~~yinD~G 162 (566)
T TIGR00456 116 IEFSSANPAG-PLHIGHLRNAIIGDSLARILE-FLGYDVIREYYVNDWG 162 (566)
T ss_pred EEecCCCCCC-CCchhhhHHHHHHHHHHHHHH-HCCCCeeEEeeecchH
Confidence 3478888898 79999988765 344444 34554432 367754
No 160
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=32.84 E-value=86 Score=35.72 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=35.9
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEec-CCCCCCccccchHHHH---hHHhHHhhCCCeEEEEecCcc
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~-~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (399)
..+.+.|+|....+ ++++|.+.+|. -+|| .||+||.+... ++.++++.-|..+...-|=+|
T Consensus 20 ~~W~~~~~f~~~~~---------~~~~f~i~~ppP~~~G-~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 84 (874)
T PRK05729 20 QKWEEKGYFKPDDN---------SKKPFSIVIPPPNVTG-SLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDH 84 (874)
T ss_pred HHHHHCCCcccCcC---------CCCCEEEecCCCCCCC-cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCc
Confidence 35667787766331 34567776654 2456 89999988753 333345554655554445444
No 161
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.43 E-value=36 Score=38.57 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=34.1
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEe-cCCCCCCccccchHHHH---hHHhHHhhCCCeEEEEecCccc
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDEK 130 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG-~~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~D~~a 130 (399)
..+...|+|....+.+ .+++.|.+- =-+|| +||+||.+..- ++.++++.-|..+..+-|=+||
T Consensus 16 ~~W~~~~~f~~~~~~~--------~~~f~I~~PPPNVTG-~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhA 82 (877)
T COG0525 16 KKWEESGYFKPDPNED--------KPPFSIDTPPPNVTG-SLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHA 82 (877)
T ss_pred HHHHhcCCccCCCCCC--------CCCcEEeCCCCCCCC-cccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCC
Confidence 3556677665553321 023333221 12377 89999987753 3334555446666665555553
No 162
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=29.78 E-value=84 Score=32.94 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=27.3
Q ss_pred eEEEecCCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCc
Q 015880 87 YLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDD 128 (399)
Q Consensus 87 ~iytG~~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~ 128 (399)
++=.-=-||| -+|||-+-..+ -+| +.+..|..+++-|-|.
T Consensus 35 RvRFAPSPTG-fLHlGgLRTAL-fNYLfArk~gGkFiLRiEDT 75 (524)
T KOG1149|consen 35 RVRFAPSPTG-FLHLGGLRTAL-FNYLFARKKGGKFILRIEDT 75 (524)
T ss_pred EEeecCCCCc-ceehhhHHHHH-HHHHHHHhcCCeEEEEeccc
Confidence 3333334667 89999999985 455 5666777777777553
No 163
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=29.01 E-value=60 Score=32.80 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=23.4
Q ss_pred EEecCCCCCCccccchHHHHh---HHhHHhhCCCeEEEE--ecCcc
Q 015880 89 YTGRGPSSEALHLGHLVPFMF---TKYLQDAFKVPLVIQ--LTDDE 129 (399)
Q Consensus 89 ytG~~PTg~slHlGhlv~~~~---~~~lQ~~~~~~v~I~--I~D~~ 129 (399)
|+.--|++ .||+||+-..++ +..+-++.|..|.-. |+|+=
T Consensus 26 ~sSpNp~k-plHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G 70 (354)
T PF00750_consen 26 FSSPNPTK-PLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWG 70 (354)
T ss_dssp E---BTTS-S-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTS
T ss_pred ecCCCCCC-CCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCC
Confidence 88888998 799999877652 222333456666543 78875
No 164
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=29.00 E-value=4.1e+02 Score=23.53 Aligned_cols=72 Identities=25% Similarity=0.421 Sum_probs=34.7
Q ss_pred EEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEec-Cccccccc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 015880 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT-DDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (399)
Q Consensus 88 iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~-D~~a~~~~-~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~ 165 (399)
+|.|.- +.+|+||+..+. ..++. .+ .++|.++ +......+ ..+.++-.+..+..+. ..|++-+++.+.
T Consensus 3 v~~G~F---dP~H~GHl~~i~--~a~~~-~d-~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~~~~---~~~~~~~~v~v~ 72 (163)
T cd02166 3 LFIGRF---QPFHLGHLKVIK--WILEE-VD-ELIIGIGSAQESHTLENPFTAGERVLMIRRALE---EEGIDLSRYYII 72 (163)
T ss_pred EEeecc---CCCCHHHHHHHH--HHHHH-CC-EEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHH---hcCCCcCeEEEE
Confidence 455522 459999986653 22332 33 4455453 32232222 3666654433332222 235555677666
Q ss_pred eccc
Q 015880 166 SDFD 169 (399)
Q Consensus 166 ~~s~ 169 (399)
...+
T Consensus 73 ~~~d 76 (163)
T cd02166 73 PVPD 76 (163)
T ss_pred ecCC
Confidence 5443
No 165
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=28.46 E-value=87 Score=22.69 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=17.3
Q ss_pred CCCCccccchHHHHhHHhHHhhCCCeEEEEecC
Q 015880 95 SSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127 (399)
Q Consensus 95 Tg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D 127 (399)
|-+.+|.||.-.+. +..+.++ .+++.|+-
T Consensus 7 ~Fdp~H~GH~~~l~---~a~~~~~-~~vv~i~~ 35 (66)
T TIGR00125 7 TFDPFHLGHLDLLE---RAKELFD-ELIVGVGS 35 (66)
T ss_pred ccCCCCHHHHHHHH---HHHHhCC-EEEEEECc
Confidence 33579999976653 3334345 55665554
No 166
>PRK07217 replication factor A; Reviewed
Probab=28.05 E-value=1.6e+02 Score=29.40 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhc-CCCC--hHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 015880 339 AELEHIKKEYGA-GGML--TGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMA 390 (399)
Q Consensus 339 ~eleei~~~~~~-G~~~--~~~~K~~la~~i~~~l~~~r~~~~~~~~~~l~~~~~ 390 (399)
+..++|.++|.. | +. ..++++.|-..|+++=-|..+++..+++.++++|=-
T Consensus 6 ~~aeei~~~~s~lg-vdv~~~~ie~~L~~Lv~ey~VP~~EA~rSv~~~~~~k~g~ 59 (311)
T PRK07217 6 QHAEEIHEQFSDLG-VDVSVEDVEERLDTLVTEFKVPEDEARRSVTNYYLKEAGI 59 (311)
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 346788888876 4 45 889999999999999999999999999989999843
No 167
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=26.88 E-value=52 Score=38.38 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=37.7
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEecC-CCCCCccccchHHHH---hHHhHHhhCCCeEEEEecCcc
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~-PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (399)
..+.+.|+|..... + ..+.+|+++.|.= +|| .||+||.+... ++.++++.-|..|....|-+|
T Consensus 30 ~~W~~~~~f~~~~~-~------~~~~~f~i~~pPP~~nG-~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~ 96 (1052)
T PRK14900 30 PFWQERGYFHGDEH-D------RTRPPFSIVLPPPNVTG-SLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDH 96 (1052)
T ss_pred HHHHHCCCccCCcc-c------CCCCCEEEecCCCCCCC-cchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCc
Confidence 35666777755311 0 2345688888863 456 89999988753 333455555666655545444
No 168
>PLN02843 isoleucyl-tRNA synthetase
Probab=25.34 E-value=1.5e+02 Score=34.27 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=31.6
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceeEEEecC-CCCCCccccchHHHH---hHHhHHhhCCCeEEE
Q 015880 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVI 123 (399)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~-PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I 123 (399)
.+.+.|++....+. +++++|++..|.= ++| .||+||.+... +..++++.-|..+..
T Consensus 15 ~W~~~~~y~~~~~~-------~~~~~f~i~~~PPy~nG-~lHiGHa~~~~lkDii~Ry~rm~G~~v~~ 74 (974)
T PLN02843 15 LWEENQVYKRVSDR-------NNGESFTLHDGPPYANG-DLHIGHALNKILKDFINRYQLLQGKKVHY 74 (974)
T ss_pred HHHHCCCccccccc-------cCCCCEEEeCCCCCCCC-CcchhHHHHHHHHHHHHHHHHhcCCcccc
Confidence 44456666543321 2456787777752 356 89999988764 223344444544444
No 169
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.15 E-value=77 Score=34.44 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=26.5
Q ss_pred EEecCCCCCCccccchHHHH----hHHhHHhhCCCeEEEE--ecCccc
Q 015880 89 YTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDEK 130 (399)
Q Consensus 89 ytG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~--I~D~~a 130 (399)
|+.=-||+ .||+||+-..+ +.+-|.- .|..|+-. |+||=.
T Consensus 123 ~sSaNptk-plHiGHlR~aiiGDsLaril~~-~Gy~V~r~~yvnD~G~ 168 (577)
T COG0018 123 YSSANPTG-PLHIGHLRNAIIGDSLARILEF-LGYDVTRENYVNDWGT 168 (577)
T ss_pred EeCCCCCC-CcccchhhhhHHHHHHHHHHHH-cCCCeeEEeeECcHHH
Confidence 78888998 69999988764 2333444 45555443 788753
No 170
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=24.98 E-value=4e+02 Score=24.82 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=33.9
Q ss_pred ceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcc-ccccc-CCCHHHHHHHHHHHH
Q 015880 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCMWK-NLSVEESQRLARENA 149 (399)
Q Consensus 85 ~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~-a~~~~-~~~~e~i~~~~~~~~ 149 (399)
...+|.|+- ..+|+||+-.+. .-+.++ + .++|.||--. +.+.+ +.|..+-....+..+
T Consensus 5 d~~v~iGRF---QPfH~GHl~~I~--~al~~~-d-evII~IGSA~~s~t~~NPFTa~ER~~MI~~aL 64 (196)
T PRK13793 5 DYLVFIGRF---QPFHLAHMQTIE--IALQQS-R-YVILALGSAQMERNIKNPFLAIEREQMILSNF 64 (196)
T ss_pred eEEEEEecC---CCCcHHHHHHHH--HHHHhC-C-EEEEEEccCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 356888865 459999986552 335543 4 6666665433 33333 488877665544443
No 171
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=24.73 E-value=2.6e+02 Score=24.71 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=28.2
Q ss_pred eeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCC
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSAS 281 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS 281 (399)
.+.+|.||..-.....++-++.|...-....-+++-.-. +.|.|+|
T Consensus 91 ~ivvs~et~~~~~~in~~r~~~gl~~l~i~~v~~~~~~~--~~~~SSt 136 (153)
T PRK00777 91 AIVVSPETYPGALKINEIRRERGLKPLEIVVIDFVLAED--GKPISST 136 (153)
T ss_pred EEEEChhhhhhHHHHHHHHHHCCCCceEEEEEeeeecCC--CCeeeHH
Confidence 467888988777777777777777532333333332222 4677776
No 172
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=23.98 E-value=6.7e+02 Score=24.29 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=45.2
Q ss_pred CCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 015880 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (399)
Q Consensus 83 ~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt 162 (399)
+.++.++.|+..++ ---.+.+.+..++. |+..++++. |. +. +.+.+++.++.+..+. +.++ .+
T Consensus 71 ~~~~~viagvg~~~------t~~ai~~a~~a~~~-Gad~v~v~~-P~-y~--~~~~~~l~~~f~~va~---a~~l---Pv 133 (293)
T PRK04147 71 KGKVKLIAQVGSVN------TAEAQELAKYATEL-GYDAISAVT-PF-YY--PFSFEEICDYYREIID---SADN---PM 133 (293)
T ss_pred CCCCCEEecCCCCC------HHHHHHHHHHHHHc-CCCEEEEeC-Cc-CC--CCCHHHHHHHHHHHHH---hCCC---CE
Confidence 34577888886543 11222245666765 776666544 33 21 2456666655444332 3444 36
Q ss_pred EEEeccccCccch-HHHHHHHHhhcCH
Q 015880 163 FIFSDFDYVGGAF-YKNMVKVAKCVTY 188 (399)
Q Consensus 163 ~i~~~s~~~~~~~-~~~~~~l~~~~t~ 188 (399)
++|++....+..+ ...+.+|+++.++
T Consensus 134 ~iYn~P~~tg~~l~~~~l~~L~~~pnv 160 (293)
T PRK04147 134 IVYNIPALTGVNLSLDQFNELFTLPKV 160 (293)
T ss_pred EEEeCchhhccCCCHHHHHHHhcCCCE
Confidence 8887653322222 2234456655443
No 173
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=23.67 E-value=72 Score=36.94 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=38.0
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEecC-CCCCCccccchHHHH---hHHhHHhhCCCeEEEEecCcc
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~-PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (399)
..+.+.|+|....+... -..+++|++.+|.= ||| .||+||.+... ++.++++.-|..|....|=+|
T Consensus 39 ~~W~~~~~f~~~~~~~~----~~~~~~f~i~~ppP~~~G-~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~ 108 (995)
T PTZ00419 39 EWWEKSGFFKPAEDAKS----LNSGKKFVIVLPPPNVTG-YLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDH 108 (995)
T ss_pred HHHHHCCCcccCccccc----cCCCCeEEEEeCCCCCCC-CCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCC
Confidence 35666777765321110 02345677777752 456 89999988753 333455555666665555444
No 174
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=23.43 E-value=6e+02 Score=25.14 Aligned_cols=115 Identities=16% Similarity=0.228 Sum_probs=72.4
Q ss_pred CCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhC
Q 015880 38 GCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAF 117 (399)
Q Consensus 38 g~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~ 117 (399)
|.-+=+++....|+.|++. .|....=| -.|..++.++.+.++ .+|.++.|+=||. ..|=+---.+ +..+++. +
T Consensus 57 GtCKSa~~~~sDLe~l~~~-t~~IR~Y~--sDCn~le~v~pAa~~-~g~kv~lGiw~td-d~~~~~~~ti-l~ay~~~-~ 129 (305)
T COG5309 57 GTCKSADQVASDLELLASY-THSIRTYG--SDCNTLENVLPAAEA-SGFKVFLGIWPTD-DIHDAVEKTI-LSAYLPY-N 129 (305)
T ss_pred CCCcCHHHHHhHHHHhccC-CceEEEee--ccchhhhhhHHHHHh-cCceEEEEEeecc-chhhhHHHHH-HHHHhcc-C
Confidence 4455566677777777766 33211112 346678888888777 5699999999996 6885543222 3445554 2
Q ss_pred CC--eEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 015880 118 KV--PLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVT 160 (399)
Q Consensus 118 ~~--~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~ 160 (399)
+. ...|.+| -|+.-.+.++.+++.++.......+.+.|++..
T Consensus 130 ~~d~v~~v~VG-nEal~r~~~tasql~~~I~~vrsav~~agy~gp 173 (305)
T COG5309 130 GWDDVTTVTVG-NEALNRNDLTASQLIEYIDDVRSAVKEAGYDGP 173 (305)
T ss_pred CCCceEEEEec-hhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 33 3344445 566554569999999887665555557898753
No 175
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.27 E-value=4.5e+02 Score=26.43 Aligned_cols=69 Identities=20% Similarity=0.382 Sum_probs=36.1
Q ss_pred HHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHh-CCc---eeE-EEecC-CCCCCccccchHHHHhHHhHHhhCCC
Q 015880 46 LVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEK-GEK---FYL-YTGRG-PSSEALHLGHLVPFMFTKYLQDAFKV 119 (399)
Q Consensus 46 ~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~-~~~---~~i-ytG~~-PTg~slHlGhlv~~~~~~~lQ~~~~~ 119 (399)
||+.+-+ ||+ .-++++|. ....+.+..++.+.+ |.+ +.+ -|... |+. .. -+-+..+.+|++.|++
T Consensus 125 LL~~~A~-~gk--PvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~--~~---~~nL~~I~~Lk~~f~~ 195 (329)
T TIGR03569 125 LLKKIAR-FGK--PVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAP--FE---DVNLNAMDTLKEAFDL 195 (329)
T ss_pred HHHHHHh-cCC--cEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCC--cc---cCCHHHHHHHHHHhCC
Confidence 5544444 455 46788887 344444444444443 332 433 24433 553 22 2334445678888888
Q ss_pred eEEE
Q 015880 120 PLVI 123 (399)
Q Consensus 120 ~v~I 123 (399)
||..
T Consensus 196 pVG~ 199 (329)
T TIGR03569 196 PVGY 199 (329)
T ss_pred CEEE
Confidence 7764
No 176
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=21.93 E-value=1.7e+02 Score=33.65 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=26.3
Q ss_pred CCceeEEEecC-CCCCCccccchHHHH---hHHhHHhhCCCeEEEEecCc
Q 015880 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDD 128 (399)
Q Consensus 83 ~~~~~iytG~~-PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~D~ 128 (399)
+++|++..|.= ++| .+|+||.+... +..++++.-|..+....|-+
T Consensus 48 ~~~f~i~~~pPyanG-~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D 96 (912)
T PRK05743 48 KPKFILHDGPPYANG-DIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWD 96 (912)
T ss_pred CCcEEEeCCCCCCCC-CccHHHHHHHHHHHHHHHHHHccCCcccCCCCcC
Confidence 34577777753 356 89999988753 23335554455554443433
No 177
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=21.29 E-value=1.3e+02 Score=26.67 Aligned_cols=38 Identities=21% Similarity=0.417 Sum_probs=22.8
Q ss_pred ceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcc
Q 015880 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (399)
Q Consensus 85 ~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~ 129 (399)
++..+.| |=+.+|.||+--+..++ + .|-.++|.|+.++
T Consensus 3 ~iv~~~G---~FD~~H~GHi~~L~~A~---~-lgd~liVgV~~D~ 40 (152)
T cd02173 3 KVVYVDG---AFDLFHIGHIEFLEKAR---E-LGDYLIVGVHDDQ 40 (152)
T ss_pred eEEEEcC---cccCCCHHHHHHHHHHH---H-cCCEEEEEEeCcH
Confidence 3444445 44789999976553332 2 2556777777655
No 178
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=21.19 E-value=2.3e+02 Score=27.79 Aligned_cols=54 Identities=6% Similarity=0.124 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcc
Q 015880 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 302 (399)
Q Consensus 242 d~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~k 302 (399)
.|...+.+.+++.++++ ...+..+.+..-+ |..||+= ..+|+....+....|.+
T Consensus 152 ~gq~~~Lk~~~~dl~~~-v~ii~~~~vr~~d--GlaiSSR----N~~Ls~~~r~~A~~l~~ 205 (277)
T cd00560 152 AQQLAVIRRMVRDLNLP-VEIVGCPTVREED--GLALSSR----NVYLSAEERKEALALYR 205 (277)
T ss_pred cccHHHHHHHHHHcCCe-EEEEcCCceecCC--CceEeCC----CCCCCHHHHHHHHHHHH
Confidence 67777889999998873 2222234333334 4788875 35666544444444433
No 179
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=20.26 E-value=1.1e+02 Score=33.16 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=25.6
Q ss_pred EEecCCCCCCccccchHHHH----hHHhHHhhCCCeEEE--EecCcc
Q 015880 89 YTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVI--QLTDDE 129 (399)
Q Consensus 89 ytG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I--~I~D~~ 129 (399)
|+.=-|++ .||+||+-... +.+-|.- .|..|.- -|+||=
T Consensus 119 ~sSpNp~k-plHvGH~R~aiiGd~l~ril~~-~G~~V~r~nyinD~G 163 (562)
T PRK12451 119 YSSPNIAK-PFSMGHLRSTMIGNALKHIAEK-CGYEVVGINYIGDWG 163 (562)
T ss_pred ecCCCCCC-CcccchhhhHHHHHHHHHHHHH-CCCCeEEEeeecCch
Confidence 78888998 69999987764 2333444 4555543 267764
Done!