Query 015880
Match_columns 399
No_of_seqs 241 out of 1754
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:07:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tze_A Tryptophanyl-tRNA synth 100.0 6E-103 2E-107 790.6 30.9 381 10-394 20-406 (406)
2 3hv0_A Tryptophanyl-tRNA synth 100.0 2E-102 6E-107 785.5 27.2 381 16-397 3-386 (393)
3 3i05_A Tryptophanyl-tRNA synth 100.0 1E-101 3E-106 780.5 27.4 381 13-397 8-389 (395)
4 3hzr_A Tryptophanyl-tRNA synth 100.0 1.2E-98 4E-103 755.4 32.1 376 14-394 11-386 (386)
5 1r6t_A Tryptophanyl-tRNA synth 100.0 1.2E-97 4E-102 767.2 30.0 389 10-398 78-470 (477)
6 1r6u_A Tryptophanyl-tRNA synth 100.0 7.4E-98 3E-102 759.7 26.0 389 10-398 31-423 (437)
7 3jxe_A Tryptophanyl-tRNA synth 100.0 8.5E-97 3E-101 743.2 31.1 366 13-394 3-370 (392)
8 2ip1_A Tryptophanyl-tRNA synth 100.0 2E-96 7E-101 749.9 31.1 388 9-396 19-414 (432)
9 3foc_A Tryptophanyl-tRNA synth 100.0 8E-95 2.7E-99 737.1 28.3 370 26-395 32-451 (451)
10 3a04_A Tryptophanyl-tRNA synth 100.0 8.9E-91 3.1E-95 697.4 28.4 362 13-391 2-369 (372)
11 3prh_A Tryptophanyl-tRNA synth 100.0 1.2E-64 4.3E-69 508.0 20.8 302 66-391 11-336 (388)
12 2cya_A Tyrosyl-tRNA synthetase 100.0 2.6E-63 8.7E-68 497.5 24.5 295 59-379 10-347 (364)
13 2cyc_A Tyrosyl-tRNA synthetase 100.0 1.9E-63 6.6E-68 500.0 21.7 297 59-380 7-361 (375)
14 3tzl_A Tryptophanyl-tRNA synth 100.0 8.7E-63 3E-67 486.1 21.8 280 85-391 3-300 (322)
15 2j5b_A Tyrosyl-tRNA synthetase 100.0 1.2E-62 4.1E-67 490.0 21.9 304 59-393 15-348 (348)
16 3sz3_A Tryptophanyl-tRNA synth 100.0 2E-62 6.9E-67 485.9 16.4 284 86-391 7-315 (341)
17 2g36_A Tryptophanyl-tRNA synth 100.0 9.1E-62 3.1E-66 482.1 21.0 286 84-391 11-316 (340)
18 3vgj_A Tyrosyl-tRNA synthetase 100.0 2.2E-61 7.7E-66 484.2 24.0 302 59-382 31-358 (373)
19 2yxn_A Tyrosyl-tRNA synthetase 100.0 1.9E-62 6.4E-67 484.0 15.6 290 58-380 7-321 (322)
20 1yi8_B Tryptophanyl-tRNA synth 100.0 1.3E-61 4.6E-66 482.7 21.5 288 83-391 20-326 (351)
21 3n9i_A Tryptophanyl-tRNA synth 100.0 1.7E-61 5.8E-66 479.5 18.7 284 85-391 15-320 (346)
22 2el7_A Tryptophanyl-tRNA synth 100.0 9.7E-61 3.3E-65 474.3 23.7 284 87-391 3-305 (337)
23 1i6k_A TRPRS, tryptophanyl-tRN 100.0 9.7E-61 3.3E-65 472.8 19.7 280 86-391 2-302 (328)
24 2yy5_A Tryptophanyl-tRNA synth 100.0 7.9E-61 2.7E-65 476.7 18.5 285 84-391 3-320 (348)
25 2cyb_A Tyrosyl-tRNA synthetase 100.0 9E-60 3.1E-64 465.6 25.4 292 59-379 7-321 (323)
26 2jan_A Tyrosyl-tRNA synthetase 100.0 2.1E-60 7.1E-65 483.7 21.2 292 58-381 6-319 (432)
27 1n3l_A Tyrosyl-tRNA synthetase 100.0 2.7E-59 9.3E-64 469.8 22.4 290 58-378 10-329 (372)
28 3p0j_A Tyrosyl-tRNA synthetase 100.0 9E-59 3.1E-63 495.9 26.9 316 60-390 16-360 (690)
29 2zp1_A Tyrosyl-tRNA synthetase 100.0 1.6E-58 5.5E-63 454.6 24.9 285 59-379 4-308 (314)
30 2pid_A Tyrosyl-tRNA synthetase 100.0 1.7E-59 5.8E-64 468.2 18.0 289 58-382 12-342 (356)
31 2ts1_A Tyrosyl-tRNA synthetase 100.0 4.8E-59 1.7E-63 472.8 21.1 290 59-381 5-317 (419)
32 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 6.2E-58 2.1E-62 465.7 24.4 289 59-381 7-318 (420)
33 1h3f_A Tyrosyl-tRNA synthetase 100.0 7.3E-58 2.5E-62 466.1 21.1 290 58-390 11-325 (432)
34 2dlc_X Tyrosyl-tRNA synthetase 100.0 1.3E-57 4.5E-62 460.7 22.2 302 59-389 13-351 (394)
35 1y42_X Tyrosyl-tRNA synthetase 100.0 3.6E-57 1.2E-61 456.1 22.0 292 58-382 37-381 (392)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 3.8E-49 1.3E-53 421.7 18.9 271 83-380 380-671 (690)
37 2cfo_A Glutamyl-tRNA synthetas 98.6 5.7E-06 2E-10 85.4 22.2 189 93-302 9-276 (492)
38 1nzj_A Hypothetical protein YA 98.5 2.1E-07 7.2E-12 90.3 9.7 175 93-288 13-239 (298)
39 1j09_A Glutamyl-tRNA synthetas 98.5 3.8E-07 1.3E-11 93.7 9.5 188 93-302 9-272 (468)
40 2ja2_A Glutamyl-tRNA synthetas 98.3 6.3E-06 2.2E-10 85.2 14.6 188 93-302 14-286 (498)
41 3afh_A Glutamyl-tRNA synthetas 98.2 1.6E-06 5.6E-11 89.4 6.1 190 90-302 30-284 (488)
42 3al0_C Glutamyl-tRNA(Gln) amid 98.1 2.5E-06 8.5E-11 90.0 5.5 194 86-302 130-388 (592)
43 2o5r_A Glutamyl-tRNA synthetas 97.8 0.00021 7.3E-09 73.5 13.9 65 234-302 221-291 (481)
44 4g6z_A Glutamate-tRNA ligase; 97.6 0.0014 4.8E-08 67.5 15.9 70 92-171 32-102 (490)
45 1irx_A Lysyl-tRNA synthetase; 97.4 0.00023 7.8E-09 74.0 8.2 65 236-302 235-308 (523)
46 3aii_A Glutamyl-tRNA synthetas 97.3 0.00046 1.6E-08 71.9 8.1 72 89-171 98-172 (553)
47 4gri_A Glutamate--tRNA ligase; 97.2 0.0019 6.4E-08 67.0 11.4 50 233-284 231-280 (512)
48 3h99_A Methionyl-tRNA syntheta 96.8 0.005 1.7E-07 64.3 10.8 75 84-160 18-105 (560)
49 3tqo_A Cysteinyl-tRNA syntheta 96.0 0.025 8.6E-07 57.8 9.9 71 88-160 29-111 (462)
50 3fnr_A Arginyl-tRNA synthetase 93.5 0.025 8.4E-07 57.9 2.0 58 233-291 238-298 (464)
51 1qtq_A GLNRS, protein (glutami 93.4 0.16 5.4E-06 52.9 7.8 84 78-171 17-103 (553)
52 2hz7_A Glutaminyl-tRNA synthet 91.6 0.38 1.3E-05 52.4 8.2 84 78-171 57-143 (851)
53 3u1f_A Methionyl-tRNA syntheta 91.3 0.37 1.3E-05 49.6 7.5 79 81-160 6-96 (542)
54 2csx_A Methionyl-tRNA syntheta 90.8 0.13 4.3E-06 52.7 3.4 54 234-291 253-308 (497)
55 2d5b_A Methionyl-tRNA syntheta 90.2 0.16 5.6E-06 51.8 3.6 55 234-291 254-310 (500)
56 3kfl_A Methionyl-tRNA syntheta 87.9 0.19 6.4E-06 52.4 2.1 54 234-291 297-352 (564)
57 1iq0_A Arginyl-tRNA synthetase 87.2 0.12 4E-06 54.4 0.1 57 233-293 349-409 (592)
58 3u1f_A Methionyl-tRNA syntheta 87.1 0.31 1.1E-05 50.2 3.2 52 234-291 281-336 (542)
59 1ile_A Ilers, isoleucyl-tRNA s 85.9 0.39 1.3E-05 52.4 3.3 55 234-291 547-604 (821)
60 2zue_A Arginyl-tRNA synthetase 85.1 0.32 1.1E-05 51.4 2.1 58 233-294 379-442 (629)
61 2x1l_A Methionyl-tRNA syntheta 84.1 0.31 1.1E-05 50.1 1.4 76 84-160 12-99 (524)
62 4dlp_A Aminoacyl-tRNA syntheta 83.2 0.39 1.3E-05 49.6 1.7 52 234-291 279-334 (536)
63 1rqg_A Methionyl-tRNA syntheta 83.1 2.1 7.3E-05 45.9 7.5 76 84-160 2-90 (722)
64 1ffy_A Isoleucyl-tRNA syntheta 82.5 0.89 3E-05 50.2 4.3 53 234-291 551-608 (917)
65 3c8z_A Cysteinyl-tRNA syntheta 82.0 0.59 2E-05 46.7 2.5 72 87-160 42-126 (414)
66 1li5_A Cysrs, cysteinyl-tRNA s 80.2 0.77 2.6E-05 46.7 2.6 72 86-159 23-107 (461)
67 2csx_A Methionyl-tRNA syntheta 79.0 3.5 0.00012 41.8 7.1 73 87-160 7-92 (497)
68 4arc_A Leucine--tRNA ligase; l 78.8 7.7 0.00026 42.6 10.1 92 60-160 37-140 (880)
69 3kfl_A Methionyl-tRNA syntheta 78.4 4.8 0.00016 41.7 8.0 77 82-160 24-113 (564)
70 1li5_A Cysrs, cysteinyl-tRNA s 78.1 4.4 0.00015 41.0 7.5 53 234-291 223-279 (461)
71 1gax_A Valrs, valyl-tRNA synth 77.5 1.3 4.6E-05 48.4 3.6 53 234-291 484-541 (862)
72 3c8z_A Cysteinyl-tRNA syntheta 76.8 5 0.00017 39.9 7.4 54 234-291 247-304 (414)
73 4dlp_A Aminoacyl-tRNA syntheta 76.4 6.1 0.00021 40.5 8.1 75 84-160 25-112 (536)
74 2d5b_A Methionyl-tRNA syntheta 75.7 4.9 0.00017 40.7 7.1 73 87-160 5-90 (500)
75 3sp1_A Cysteinyl-tRNA syntheta 74.9 7.6 0.00026 39.8 8.2 70 90-161 48-139 (501)
76 1wz2_A Leucyl-tRNA synthetase; 73.5 2.3 7.9E-05 47.1 4.2 54 234-291 606-663 (967)
77 1wkb_A Leucyl-tRNA synthetase; 71.4 2 6.9E-05 46.6 3.1 54 234-291 606-663 (810)
78 2x1l_A Methionyl-tRNA syntheta 70.5 10 0.00035 38.6 8.0 54 234-291 268-323 (524)
79 1f7u_A Arginyl-tRNA synthetase 70.4 1.9 6.4E-05 45.4 2.5 58 233-296 367-425 (607)
80 1gax_A Valrs, valyl-tRNA synth 62.8 10 0.00034 41.5 6.4 60 60-129 19-82 (862)
81 2v0c_A Aminoacyl-tRNA syntheta 59.6 2.7 9.4E-05 46.1 1.2 15 276-291 636-650 (878)
82 1rqg_A Methionyl-tRNA syntheta 59.2 3.3 0.00011 44.4 1.8 52 235-291 293-357 (722)
83 2ejc_A Pantoate--beta-alanine 57.2 1.3E+02 0.0043 28.3 17.4 49 237-293 147-195 (280)
84 3sp1_A Cysteinyl-tRNA syntheta 53.0 4.2 0.00014 41.7 1.2 52 235-290 257-311 (501)
85 2v0c_A Aminoacyl-tRNA syntheta 51.8 24 0.00081 38.7 7.0 91 60-160 16-120 (878)
86 1ile_A Ilers, isoleucyl-tRNA s 49.4 7.4 0.00025 42.2 2.5 48 82-130 36-88 (821)
87 3foc_A Tryptophanyl-tRNA synth 48.1 4.2 0.00014 41.2 0.3 23 223-245 223-247 (451)
88 4arc_A Leucine--tRNA ligase; l 47.7 8.4 0.00029 42.3 2.6 14 277-291 639-652 (880)
89 1iq0_A Arginyl-tRNA synthetase 44.2 13 0.00044 38.7 3.3 41 86-128 106-152 (592)
90 1f7u_A Arginyl-tRNA synthetase 43.6 18 0.00061 37.9 4.3 38 89-128 149-192 (607)
91 2zue_A Arginyl-tRNA synthetase 39.6 19 0.00064 37.9 3.7 42 85-128 120-168 (629)
92 3oqi_A YVMC, putative uncharac 38.1 2.4E+02 0.0081 26.1 10.5 93 81-180 27-130 (257)
93 1ffy_A Isoleucyl-tRNA syntheta 34.1 17 0.00058 40.0 2.4 40 82-122 46-89 (917)
94 3fnr_A Arginyl-tRNA synthetase 32.6 35 0.0012 34.4 4.3 46 83-129 29-80 (464)
95 1qtq_A GLNRS, protein (glutami 23.0 40 0.0014 34.9 2.7 49 233-284 225-274 (553)
96 3ci9_A Heat shock factor-bindi 20.7 1.7E+02 0.0059 19.9 4.7 29 360-388 5-33 (48)
No 1
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=5.8e-103 Score=790.62 Aligned_cols=381 Identities=45% Similarity=0.868 Sum_probs=345.2
Q ss_pred hhccCcccccCCccC------CCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhC
Q 015880 10 EEEREQVVSPWEVSS------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83 (399)
Q Consensus 10 ~~~~~~~v~pw~~~~------~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~ 83 (399)
+++.++.||||+|++ ...|||+|||++||+++||+++++||+++||+++|+|++||+||+|+|++.++++++++
T Consensus 20 ~~~~~~~v~pw~v~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~RG~i~~~~d~~~ll~~~~~~ 99 (406)
T 3tze_A 20 GSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAHRDFNLLLDEIANN 99 (406)
T ss_dssp --------------------CCSCCCHHHHHHTTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTT
T ss_pred CccCCcccCccccccccccCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCCCeeccccHHHHHHHHhcC
Confidence 456799999999986 23699999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015880 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (399)
Q Consensus 84 ~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 163 (399)
+|+++|+||+|||++|||||++++++++|||+++|++++|+|||+||+++++++++++++|+++++++|+|||+||++++
T Consensus 100 ~p~~vy~G~~PTg~~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~ 179 (406)
T 3tze_A 100 RPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTY 179 (406)
T ss_dssp CCEEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEE
T ss_pred CCeEEEEeeCCCCCcccHHHHHHHHHHHHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 99999999999998999999999999999999989999999999999988889999999999999999999999999999
Q ss_pred EEeccccCccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchh
Q 015880 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 243 (399)
Q Consensus 164 i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~ 243 (399)
||+||+|.+ .+|..+++++|++|++++++++||++++|+|+|+||+|||||+|+++||+++.+. .|+||||.||+|
T Consensus 180 i~~qs~~~~-~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~---a~lvpvG~DQ~~ 255 (406)
T 3tze_A 180 IFSNVEASH-HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAAVDQDP 255 (406)
T ss_dssp EEEHHHHGG-GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTC---EEEEEEEGGGHH
T ss_pred EEeccHhHH-HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCC---CeEEeeccchHH
Confidence 999999985 8899999999999999999999998999999999999999999999999988643 489999999999
Q ss_pred HHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCc
Q 015880 244 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLE 323 (399)
Q Consensus 244 ~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~ 323 (399)
|++++||+|+|+|+++|.++++++||+|+|+++|||||+|||+|||+|+|++|++||++|||||++.+++++++.||||+
T Consensus 256 ~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~ 335 (406)
T 3tze_A 256 FFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDID 335 (406)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCGG
T ss_pred HHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCCCCHHHHHHHHHhhccCCCcccccccccCCCCCc
Confidence 99999999999999999999999999999976799999988899999999999999999999999999999999999999
Q ss_pred chHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhCCC
Q 015880 324 VDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 394 (399)
Q Consensus 324 ~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~~l~~~~~~~~~ 394 (399)
+|++|+|+++|+.+++++++|+++|++|+++|++||+.||+.|+++|+|+|+||++++++.|++||.+|+|
T Consensus 336 v~~l~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~ 406 (406)
T 3tze_A 336 VDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406 (406)
T ss_dssp GCHHHHHHHHHCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCGGGC
T ss_pred ccHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcCCC
Confidence 99999999999878899999999999999999999999999999999999999999999999999999875
No 2
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=1.7e-102 Score=785.47 Aligned_cols=381 Identities=55% Similarity=0.985 Sum_probs=339.0
Q ss_pred ccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceeEEEecC
Q 015880 16 VVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG 93 (399)
Q Consensus 16 ~v~pw~~~~--~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~ 93 (399)
-||||+|++ ...+||+|||++||+++||+++++||+++||+++|+|++||+|++|+|++.+++++++|+|+++|+||+
T Consensus 3 ~~~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G~~ 82 (393)
T 3hv0_A 3 GSMPWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDFEKILDVYEKGELFYLYTGRG 82 (393)
T ss_dssp -----------------CCHHHHTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCCcccccCCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccCCHHHHHHHHhcCCCeEEEeCCC
Confidence 489999987 347999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccchHHHHhHHhHHhhCCCeEEEEecCccccccc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCc
Q 015880 94 PSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (399)
Q Consensus 94 PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~-~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~ 172 (399)
|||++|||||++++++++|||+++|++++|+|||+||+++| .++++++++|+++++++|+|+|+||++++||+||+|.+
T Consensus 83 PTa~~lHlGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~ 162 (393)
T 3hv0_A 83 PSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA 162 (393)
T ss_dssp CSSSSCBSTTHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHHHH
Confidence 99879999999999999999999999999999999998888 59999999999999999999999999999999999984
Q ss_pred cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHH
Q 015880 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252 (399)
Q Consensus 173 ~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla 252 (399)
.+|.++++++|++|++++++++||.+++|+|+|+||+|||||+|+.+||+++..+.|+.|+||||.||+||++++||+|
T Consensus 163 -~~~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla 241 (393)
T 3hv0_A 163 -ELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVA 241 (393)
T ss_dssp -HHHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHT
T ss_pred -HHHHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHH
Confidence 6689999999999999999999999999999999999999999999999988878888899999999999999999999
Q ss_pred HHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHH
Q 015880 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS 332 (399)
Q Consensus 253 ~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~ 332 (399)
+|+|+++|.++++++||+|+|+++|||||.+||+|||+|+|++|++||++|||||+..+++++++.||+|++|++|+|++
T Consensus 242 ~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~ 321 (393)
T 3hv0_A 242 PRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLR 321 (393)
T ss_dssp GGGTCCCCEEEEECCCCC-------------CCCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHH
T ss_pred HHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHH
Confidence 99999999999999999999976899999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhCCCCCC
Q 015880 333 FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNM 397 (399)
Q Consensus 333 ~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~~l~~~~~~~~~~~~ 397 (399)
+|+.+++++++|+++|++|+++|++||+.||+.|+++++|+|++|+++++|.|++||..|++.|.
T Consensus 322 ~~~~~~~~~eei~~~y~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~~~~ 386 (393)
T 3hv0_A 322 FLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKSREQLL 386 (393)
T ss_dssp HHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCCCCCCC
T ss_pred HHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCcCHHHHH
Confidence 99888999999999999999999999999999999999999999999999999999999998764
No 3
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=9.7e-102 Score=780.45 Aligned_cols=381 Identities=55% Similarity=0.984 Sum_probs=315.0
Q ss_pred cCcccccCCccCCCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceeEEEec
Q 015880 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (399)
Q Consensus 13 ~~~~v~pw~~~~~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~ 92 (399)
.+..||||+|++ .+||+|||++||+++||+++++||+++||+++|+|++||+||+|+|++.+++++++|+|+++|+||
T Consensus 8 ~~~~~~~~~~~~--~~dy~~l~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~RG~~~~~~d~~~~l~~~~~~~~~~vy~G~ 85 (395)
T 3i05_A 8 HEAVVTPWSVEG--DVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSHRDLNLLLDVYESGQPFYLYTGR 85 (395)
T ss_dssp ----------------CHHHHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEE
T ss_pred ccceeccccccC--cccHHHHHHHhCCCcCCHHHHHHHHHhhCcchHHHHhcCCccccccHHHHHHHHhcCCCeEEEEee
Confidence 467899999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCc
Q 015880 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~ 172 (399)
+|||++|||||++|+++++|||+++|++++|+|||++++++++++++++++|+++++++|+|||+||++++||+||+|.+
T Consensus 86 ~PTg~~lHLGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~ 165 (395)
T 3i05_A 86 GPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYMG 165 (395)
T ss_dssp CCCSSCCBGGGSHHHHHHHHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHTT
T ss_pred cCCCccchHHHHHHHHHHHHHHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHHH
Confidence 99998999999999999999999999999999999999988889999999999999999999999999999999999986
Q ss_pred cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccC-CCcceeeccccCchhHHHHHHHH
Q 015880 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDV 251 (399)
Q Consensus 173 ~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~-~~~~~~v~~G~DQd~~~~l~rdl 251 (399)
.||.++++++|++|++++++++||.+++|+|+|+||+|||||+|+++||||+.++ .++.|+||||.||+||++++||+
T Consensus 166 -~~~~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~Rdl 244 (395)
T 3i05_A 166 -CMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDI 244 (395)
T ss_dssp -TSHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHT
T ss_pred -HHHHHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999987 45679999999999999999999
Q ss_pred HHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHH
Q 015880 252 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL 331 (399)
Q Consensus 252 a~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l 331 (399)
|+|+|+++|.++++++||+|+|+++||||| ++|+|||+|+|++|++||+++||||+..+.+++++.||+|++|++|+|+
T Consensus 245 a~r~~~~~p~~l~~~~l~gLdG~~~KMSKS-~~~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~ 323 (395)
T 3i05_A 245 APRLGYLKPAVIHSKFFPGLSGPKGKMSSS-SGTAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWL 323 (395)
T ss_dssp HHHHTCCCCEEEEECCCCCC--------------CCBTTCCHHHHHHHHC----------------------CCHHHHHH
T ss_pred HHHcCCCCceeeccccccCCCCCcccCCCC-CCCcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHH
Confidence 999999999999999999999977899999 7779999999999999999999999999999999999999999999999
Q ss_pred HhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhCCCCCC
Q 015880 332 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNM 397 (399)
Q Consensus 332 ~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~~l~~~~~~~~~~~~ 397 (399)
++|+++++++++|+++|++|+++|++||+.||+.|+++|+|+|++|+++++|.|++||..+++...
T Consensus 324 ~~~~~~~~~~eei~~~y~~G~l~~g~lK~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~~~~ 389 (395)
T 3i05_A 324 SFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIMGPA 389 (395)
T ss_dssp HHHCCCSHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCTTT
T ss_pred HHHcCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhChhcccch
Confidence 999888899999999999999999999999999999999999999999999999999999998654
No 4
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=1.2e-98 Score=755.37 Aligned_cols=376 Identities=28% Similarity=0.610 Sum_probs=359.1
Q ss_pred CcccccCCccCCCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceeEEEecC
Q 015880 14 EQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG 93 (399)
Q Consensus 14 ~~~v~pw~~~~~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~ 93 (399)
...++||..+..+.+||+|||++||+++||+++++||+++||+++|+|++||+||+|+|++.+++++++|+++++|+||+
T Consensus 11 ~~~~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~d~~~ll~~~~~~~~~~vysG~~ 90 (386)
T 3hzr_A 11 QTPSQLLQSFTTRTTDYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFIFIQKY 90 (386)
T ss_dssp --CCCSSCCCCSSSCCSHHHHHHHTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEESSHHHHHHHHHTTCCEEEEEEEC
T ss_pred CCCcchhhhcCcccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCchHHHHCcCccccccHHHHHHHHhcCCCeEEEeccC
Confidence 34689998776678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCcc
Q 015880 94 PSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG 173 (399)
Q Consensus 94 PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~ 173 (399)
|||+ |||||++++++++|||+++|++++|+|||++|+++|+++++++++|+++++++|+|||+||++++||.||+|.+
T Consensus 91 PTG~-lHLGh~v~~~~~~~lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~- 168 (386)
T 3hzr_A 91 PQKE-VALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG- 168 (386)
T ss_dssp CCSS-CBGGGHHHHHHHHHHHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHH-
T ss_pred CCCC-ccHHHHHHHHHHHHHHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHHH-
Confidence 9995 99999999988999999889999999999999998889999999999999999999999999999999999986
Q ss_pred chHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHH
Q 015880 174 AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 253 (399)
Q Consensus 174 ~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~ 253 (399)
.+|..+.+++|++|++++++++|+.+++|+|+|+||+|||||+|+++||||+.++ ++|+||||.||+||+++|||+|+
T Consensus 169 ~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~--~a~~VpvG~DQ~~hl~l~Rdla~ 246 (386)
T 3hzr_A 169 KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDSIKNVQFHSIIDQIAT 246 (386)
T ss_dssp HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSC--CEEEEEEEGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCC--CccccccccchHHHHHHHHHHHH
Confidence 7888999999999999999999998999999999999999999999999998764 45999999999999999999999
Q ss_pred HhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHh
Q 015880 254 RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 333 (399)
Q Consensus 254 r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~ 333 (399)
|+|+++|+++++++||||+|+ +|||||+++|+|||+|+|++|++||+++||||++.|.+++++.||+|++|++++|+++
T Consensus 247 r~n~~~p~~l~~~~l~gLdG~-~KMSKSd~~~~I~L~D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~ 325 (386)
T 3hzr_A 247 TLNFIQPTVLFHKMVPLLSGV-TKFDIPSDHNSILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNI 325 (386)
T ss_dssp HHTCCCCEEEEECCCCCTTCT-TCCCCCCTTTSCBTTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHH
T ss_pred HcCCCCceEeecCeeeCCCCC-CccCcCCCCCeeecCCCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHH
Confidence 999999999999999999996 4999999889999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhCCC
Q 015880 334 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 394 (399)
Q Consensus 334 f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~~l~~~~~~~~~ 394 (399)
|+.+++++++|+++|++|+++|++||+.||++|+++|+|+|++|+++++|.|++||.+|++
T Consensus 326 ~~~~~~~~eei~~~~~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~~~~~~~~~ 386 (386)
T 3hzr_A 326 FSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTKF 386 (386)
T ss_dssp HCSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHCC
T ss_pred HcCChhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 9877889999999999999999999999999999999999999999999999999999875
No 5
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=1.2e-97 Score=767.20 Aligned_cols=389 Identities=61% Similarity=1.098 Sum_probs=360.5
Q ss_pred hhccCcccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCcee
Q 015880 10 EEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFY 87 (399)
Q Consensus 10 ~~~~~~~v~pw~~~~--~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~ 87 (399)
++..++.||||+|++ .++|||+|||++|||++||+++++||+++||+++|+|++||+||+|+|++.++++++++++++
T Consensus 78 ~~~~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~ 157 (477)
T 1r6t_A 78 TEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFY 157 (477)
T ss_dssp ----CCEESSSCEECSCTTCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEE
T ss_pred cccccceeCCccccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCcccHHHHhCCCccccCCHHHHHHHHhcCCCcE
Confidence 445689999999987 234999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec
Q 015880 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (399)
Q Consensus 88 iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~ 167 (399)
+|+||+|||++|||||++|+++++|||+.+|++++|+|||+|+++++.++.+++++|+++++++|+|||+||++++||+|
T Consensus 158 vy~G~dPTag~LHLGh~v~~~~~~~lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~n 237 (477)
T 1r6t_A 158 LYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 237 (477)
T ss_dssp EEEEECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEH
T ss_pred EEEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEec
Confidence 99999999779999999999889999995689999999999999987799999999999999999999999999999999
Q ss_pred cccCc--cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHH
Q 015880 168 FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 245 (399)
Q Consensus 168 s~~~~--~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~ 245 (399)
|+|.+ ..++.++++|++++|++++++++++.+++|+|+|+||+|||||+++.+++..++.+....|+||||.||+||+
T Consensus 238 sd~~~~l~~~~~~~~~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i 317 (477)
T 1r6t_A 238 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYF 317 (477)
T ss_dssp HHHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHH
T ss_pred hhhhcccHHHHHHHHHHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccCCceeEeccccHHHHH
Confidence 99985 3789999999999999999999998889999999999999998777766544544455669999999999999
Q ss_pred HHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcch
Q 015880 246 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD 325 (399)
Q Consensus 246 ~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~ 325 (399)
+++||+|+|+|+++|.++++++||+|+|+++|||||.+||+|||+|+|++|++||++|||||+..+.+++++.|+||++|
T Consensus 318 ~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~ 397 (477)
T 1r6t_A 318 RMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVD 397 (477)
T ss_dssp HHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTC
T ss_pred HHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCCCceeecCCHHHHHHHhccccccCCccchhhccccCCCchHH
Confidence 99999999999999999999999999986579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhCCCCCCC
Q 015880 326 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 398 (399)
Q Consensus 326 v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~~l~~~~~~~~~~~~~ 398 (399)
++++||++|+.+++++++|+++|.+|+++++++|+.||++|+++|+|+|+||++++++.|++||..|++.|.+
T Consensus 398 ~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~Lae~i~~~l~pirer~~~~~~~~v~~~~~~~~~~~~~ 470 (477)
T 1r6t_A 398 VSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAAAL 470 (477)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhh
Confidence 9999999998889999999999999999999999999999999999999999999998899999999999864
No 6
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=7.4e-98 Score=759.66 Aligned_cols=389 Identities=62% Similarity=1.098 Sum_probs=360.7
Q ss_pred hhccCcccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCcee
Q 015880 10 EEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFY 87 (399)
Q Consensus 10 ~~~~~~~v~pw~~~~--~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~ 87 (399)
++..++.||||+|++ .++|||+|||++|||++||+++++||+++||+++|+|++||+|++|+|++.++++++++++++
T Consensus 31 ~~~~~~~v~pw~v~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~ 110 (437)
T 1r6u_A 31 TEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFY 110 (437)
T ss_dssp ----CCEEETTEEECSCTTCSCTTTHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHHTSEEEEESHHHHHHHHTTTCCEE
T ss_pred cccccceeCCCcccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCCCcHHHHhCCCccCCCCHHHHHHHHhcCCCcE
Confidence 456789999999987 234999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec
Q 015880 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (399)
Q Consensus 88 iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~ 167 (399)
+|+||+|||++|||||++|+++++|||+.+|++++|+|||+|+++++.++.+++++|+++++++|+|+|+||++++||+|
T Consensus 111 vy~G~dPTag~LHLGh~v~~~~~~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~n 190 (437)
T 1r6u_A 111 LYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 190 (437)
T ss_dssp EEEEECCCSSCCBHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEH
T ss_pred EEEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence 99999999779999999999989999995689999999999999987799999999999999999999999999999999
Q ss_pred cccCc--cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHH
Q 015880 168 FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 245 (399)
Q Consensus 168 s~~~~--~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~ 245 (399)
|+|++ ..++.++++++|+++++++++++++.+++|+|+|+||+|||||+++.+++..++.+....|+||||.||+||+
T Consensus 191 Sd~~~~l~~~~~l~~~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~lVpvG~DQ~~~i 270 (437)
T 1r6u_A 191 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYF 270 (437)
T ss_dssp HHHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHH
T ss_pred hhhhhhHHHHHHHHHHHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccCCceEEEeehhhHHHH
Confidence 99985 3688999999999999999999998889999999999999997766665444443445669999999999999
Q ss_pred HHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcch
Q 015880 246 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD 325 (399)
Q Consensus 246 ~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~ 325 (399)
+++||+|+|+|+++|.++++++||+|+|+++|||||.+||+|||+|+|++|++||++|||||+..+.+++++.|+||++|
T Consensus 271 ~l~Rdla~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~ 350 (437)
T 1r6u_A 271 RMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVD 350 (437)
T ss_dssp HHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTC
T ss_pred HHHHHHHHHhCCCCceEeecccccCCCCCccccCCCCCCCeeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHH
Confidence 99999999999999999999999999986579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhCCCCCCC
Q 015880 326 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 398 (399)
Q Consensus 326 v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~~l~~~~~~~~~~~~~ 398 (399)
++++||++|+.+++++++|+++|.+|+++++++|+.||++|+++++|+|+||++++++.|++||..++|.|.+
T Consensus 351 ~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~LAe~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~~~ 423 (437)
T 1r6u_A 351 VSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 423 (437)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTSCCCCSCC-
T ss_pred HHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcch
Confidence 9999999998889999999999999999999999999999999999999999999998899999999998854
No 7
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.5e-97 Score=743.24 Aligned_cols=366 Identities=42% Similarity=0.759 Sum_probs=330.3
Q ss_pred cCcccccCCccCCCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceeEEEec
Q 015880 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (399)
Q Consensus 13 ~~~~v~pw~~~~~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~ 92 (399)
+++.||||+|++ .+||+|||++||+++||+++++||+++||+++|+|++||+|++|+|++.+++++++|+|+++|+|+
T Consensus 3 ~~~~v~pw~v~~--~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~Rg~i~~~~d~~~l~~~~~~~~p~~i~sG~ 80 (392)
T 3jxe_A 3 EEFKVTPWEVEG--VVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLILKDYEEGRGFFLYTGR 80 (392)
T ss_dssp CCCEECSSCEES--CCCHHHHHHHTTCEECCHHHHHHHHHHTTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCeeCCccccC--cccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCcCcccccCHHHHHHHHhcCCCeEEEecc
Confidence 578999999998 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 015880 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (399)
+||| +|||||++++++++|||+.+|++++|+|||+||+++++ .+++++++++++++++|+|||+||++++||.||+|+
T Consensus 81 ~PTG-~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~ 159 (392)
T 3jxe_A 81 GPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT 159 (392)
T ss_dssp CCSS-CCBHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTST
T ss_pred CCCC-chhHHHHHHHHHHHHHHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECchhH
Confidence 9998 89999999998899999966999999999999999875 899999999999999999999999999999999998
Q ss_pred ccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHH
Q 015880 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 251 (399)
Q Consensus 172 ~~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdl 251 (399)
+ ++..++.+++++|+++++++++|++++|+|+|+||+|||| ||+.++ ..|+||||.||+||+++|||+
T Consensus 160 ~--~~~~~~~l~~~~t~~~~~~~~~~~~~~~~g~f~YP~LQaa--------Dil~~~--~a~~vpvG~DQ~~hl~l~Rdl 227 (392)
T 3jxe_A 160 K--IYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIA--------PTFFER--KRCLIPAAIDQDPYWRLQRDF 227 (392)
T ss_dssp H--HHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHG--------GGGSSS--SCEEEEEEGGGHHHHHHHHHH
T ss_pred H--HHHHHHHHHhhCCHHHHhhhhccCCCCchHHHHHHHHHHh--------hHHhhc--CCceeecccchHHHHHHHHHH
Confidence 5 8888899999999999999999999999999999999999 677774 238999999999999999999
Q ss_pred HHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHH
Q 015880 252 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL 331 (399)
Q Consensus 252 a~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l 331 (399)
|+|+|+++|..+++++||||+|+++|||||+|||+|||+|+|++|++||++||+||+..+++++++.||||++|++|+|+
T Consensus 228 a~r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~l 307 (392)
T 3jxe_A 228 AESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWL 307 (392)
T ss_dssp TGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTCCHHHHHHHHHTCC--------------------CHHHHHH
T ss_pred HHHcCCCCCeeeecccccCCCCCccccccCCCCCeeeCCCCHHHHHHHHHhhccCCCCcccccccccCCCCchhHHHHHH
Confidence 99999999999999999999998779999999999999999999999999999999999999999999999999999999
Q ss_pred Hhcc-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhCCC
Q 015880 332 SFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 394 (399)
Q Consensus 332 ~~f~-~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~~l~~~~~~~~~ 394 (399)
.+|+ .+++++++|+++|++|+++|++||+.||+.|+++++|+|++|++++ ++|++||..+++
T Consensus 308 ~~~~~~~~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~-~~v~~~l~~g~~ 370 (392)
T 3jxe_A 308 EIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE-KLVEKFKYTGKL 370 (392)
T ss_dssp HHTTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSHHHHHTTSHH
T ss_pred HHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcc
Confidence 9997 6889999999999999999999999999999999999999999999 699999988765
No 8
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=2e-96 Score=749.87 Aligned_cols=388 Identities=53% Similarity=0.948 Sum_probs=338.8
Q ss_pred hhhccCcccccCCccCC-------CCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHH
Q 015880 9 REEEREQVVSPWEVSSS-------GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYE 81 (399)
Q Consensus 9 ~~~~~~~~v~pw~~~~~-------~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~ 81 (399)
.++..++.||||+|++. ++|||+|||++|||+|||+++++||+++||+++|+|++||+|++|+|++.|+++++
T Consensus 19 ~~~~~~~~v~pw~~~~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~ 98 (432)
T 2ip1_A 19 STDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFFSERDFTKILDLYE 98 (432)
T ss_dssp ---------------------------CHHHHHHHHTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHH
T ss_pred ccccccceeCCCcccCccccccccccCCHHHHHHHhCCCcCCHHHHHHHHHhhCCccHHHHhCCCcccCCCHHHHHHHHh
Confidence 35566899999999872 23999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCC
Q 015880 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVT 160 (399)
Q Consensus 82 ~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-~~~e~i~~~~~~~~~~ilA~G~dp~ 160 (399)
+|+++++|+||+|||++|||||++|+++++|||+.+|++++++|||+||++.++ ++++++++++.+++++|+|+|+||+
T Consensus 99 ~g~~~~vy~G~dPTag~LHLGh~v~~~~l~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~ 178 (432)
T 2ip1_A 99 QGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPK 178 (432)
T ss_dssp HTCCCEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred cCCCeEEEEeecCCCCCccHHHHHHHHHHHHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999997799999999999899999956899999999999999874 8999999999999999999999999
Q ss_pred ceEEEeccccCccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccC
Q 015880 161 KTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAID 240 (399)
Q Consensus 161 kt~i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~D 240 (399)
+++||+||+|++..++..+.+++|+++++++++++++.+++|+|+|+||+|||||+++.+++..+..+....|+||||.|
T Consensus 179 k~~i~~nSd~~~~~~~~~~~~v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~D 258 (432)
T 2ip1_A 179 NTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAID 258 (432)
T ss_dssp GEEEEEHHHHCSHHHHHHHHHHHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGG
T ss_pred ceEEEeCchhhhhhHHHHHHHHHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCceEEEeccC
Confidence 99999999998667788888999999999999999988899999999999999998887775444422234589999999
Q ss_pred chhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCC
Q 015880 241 QDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGA 320 (399)
Q Consensus 241 Qd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~ 320 (399)
|+||++++||+|+|+|+++|.++++++||+|+|+++|||||.+||+|||+|+|++|++||++|||||++.+.+++++.|+
T Consensus 259 Q~~~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~ 338 (432)
T 2ip1_A 259 QDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGG 338 (432)
T ss_dssp GHHHHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGGGCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCCCeEeccCCHHHHHHHhhhhcccCCccchhhccccCC
Confidence 99999999999999999999999999999999976899999999999999999999999999999999988899999999
Q ss_pred CCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhCCCCC
Q 015880 321 NLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 396 (399)
Q Consensus 321 ~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~~l~~~~~~~~~~~ 396 (399)
||++|++++||++|+.+++++++|+++|.+|++++++||+.||++|++++||+|++|++++++.|++++..+++.+
T Consensus 339 ~pd~~~v~~~l~~f~~~~~eieel~~~~~~G~~~~~~~K~~La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~ 414 (432)
T 2ip1_A 339 NPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLVW 414 (432)
T ss_dssp CTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCCCC
T ss_pred CchHHHHHHHHHHHCCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence 9999999999999988999999999999999999999999999999999999999999999988999999988755
No 9
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=8e-95 Score=737.10 Aligned_cols=370 Identities=48% Similarity=0.854 Sum_probs=349.8
Q ss_pred CCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchH
Q 015880 26 GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLV 105 (399)
Q Consensus 26 ~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv 105 (399)
.++||+|||++||+++||+++++||+++||+++|+|++||+||+|+|++.|++++++|+|+++|+||+|||++|||||++
T Consensus 32 ~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~dl~~ll~~l~~g~p~~vytG~dPTagsLHLGH~v 111 (451)
T 3foc_A 32 AAVAYEDIITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLL 111 (451)
T ss_dssp HHHHHHHHHHTTTCBCCCHHHHHHHHHHHTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBHHHHH
T ss_pred ccCcHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccccHHHHHHHHhcCCCeEEEecCCCCCCCccHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999997799999999
Q ss_pred HHHhHHhHHhhCCCeEEEEecCccccccc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCc-cchHHHHHHHH
Q 015880 106 PFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVA 183 (399)
Q Consensus 106 ~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~-~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~-~~~~~~~~~l~ 183 (399)
++++++|||+++|++++|+|||||++++| .++++++++|+++++++|+|||+||++++||+||+|++ ..+|..+.+++
T Consensus 112 ~~~~l~~lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~ 191 (451)
T 3foc_A 112 PFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVD 191 (451)
T ss_dssp HHHHHHHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHH
Confidence 99999999999999999999999999988 59999999999999999999999999999999999987 67788888999
Q ss_pred hhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCc----------------------------------CcccccCC
Q 015880 184 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF----------------------------------PHLFSGKD 229 (399)
Q Consensus 184 ~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~----------------------------------~di~~~~~ 229 (399)
+++|+++|+++++|++++|+|+|+||+|||||+|+++| .||+.+++
T Consensus 192 r~~Tv~~m~~~~~f~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 271 (451)
T 3foc_A 192 RMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPV 271 (451)
T ss_dssp HTCCHHHHHHHHCCCSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCCHH
T ss_pred hhCCHHHHHhhcccCCCCchHHHhhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhhhhhc
Confidence 99999999999999999999999999999999998777 12333333
Q ss_pred C--------------cceeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHH
Q 015880 230 H--------------LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (399)
Q Consensus 230 ~--------------~~~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~ 295 (399)
+ ++|+||||.||+||+++|||+|+|+|+++|.++++++||||+|+++|||||.+||+|+|+|+|++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D~p~~ 351 (451)
T 3foc_A 272 HVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQ 351 (451)
T ss_dssp HHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTCCHHH
T ss_pred ccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecCCHHH
Confidence 2 78999999999999999999999999999999999999999997779999999999999999999
Q ss_pred HHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHH
Q 015880 296 IKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQV 375 (399)
Q Consensus 296 i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~ 375 (399)
|++||+++|||++..+++++++.||||++|++|+||.+|+.+++++++|+++|++|+++|++||+.||+.|+++|+|+|+
T Consensus 352 I~kKI~k~A~Td~~~~~~~~~~~~g~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pire 431 (451)
T 3foc_A 352 IKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAE 431 (451)
T ss_dssp HHHHHHHHSCCCSCSSHHHHHTTCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCccchhcccCCCCcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987889999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHhhCCCC
Q 015880 376 ARAAVTDEMVDAFMAVRPLP 395 (399)
Q Consensus 376 ~~~~~~~~~l~~~~~~~~~~ 395 (399)
||++++++.|++||..|+|.
T Consensus 432 r~~~l~~d~v~~f~~~~~~~ 451 (451)
T 3foc_A 432 RRDKVDTTMIESFTVKKELQ 451 (451)
T ss_dssp HHHTCCHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHhhCcccCC
Confidence 99999999999999999873
No 10
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=8.9e-91 Score=697.44 Aligned_cols=362 Identities=28% Similarity=0.453 Sum_probs=327.4
Q ss_pred cCcccccCCccCCCCccHHHHHHhhCCCcCChHHHHHHHHhhCCChhhHHhcCcccccCCHHHHHHHHHhCCceeEEEec
Q 015880 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (399)
Q Consensus 13 ~~~~v~pw~~~~~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~ 92 (399)
.++.||||+|++ .+||+|||++||+++||+. + +++++||.++|+|+|||+||+|||++.||+++++|+|++||||+
T Consensus 2 ~~~~v~pw~~~~--~~dy~kl~~~fg~~~i~~~-l-~~~~~~~~~~h~~lrRgi~f~hRd~d~il~~~e~gk~~~v~sG~ 77 (372)
T 3a04_A 2 AAERLDPWGAVE--IKDYDRLLRTFGIRPFSEV-L-PLLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAVLTGF 77 (372)
T ss_dssp ----CCSSCSTT--TTTTHHHHHTTTCEEGGGG-H-HHHHHTTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCeeCCCCCCC--CcCHHHHHHHhCCCCcchH-H-HHHHhccCCcchhhccceeeeccCHHHHHHHHHcCCCCEEEeCc
Confidence 467899999998 8999999999999999975 4 78889999999999999999999999999999999999999999
Q ss_pred CCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCC-CHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 015880 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL-SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~-~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (399)
+||| +|||||++++++.+|+|+. ++.++++|||+||++++.. +.+.++.++++++++|+|||+||+|++||.||++.
T Consensus 78 ~PTG-~lHLGhyv~~~~~~~lq~~-~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~ 155 (372)
T 3a04_A 78 MPSG-KFHFGHKLTVDQLIYLQKN-GFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRG 155 (372)
T ss_dssp CCCS-CCBHHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSC
T ss_pred CCCc-HhHHHHHHHHHHHHHHHhC-CCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccch
Confidence 9999 7999999999999999986 8899999999999998764 45668899999999999999999999999999875
Q ss_pred ccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHH
Q 015880 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 251 (399)
Q Consensus 172 ~~~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdl 251 (399)
..++..+..+++++|++++.+.++ ..+.|.+.||++||||++..+++.++.+++ |+||||.||+||++||||+
T Consensus 156 -~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~yP~lqAaDil~~~~d~~~gy~a---~~VPVG~DQ~~hleltRdi 228 (372)
T 3a04_A 156 -TPYFRLIQLFSGKVTAAEMEAIYG---ELTPAKMMASLTQAADILHVQLDEYGGYRH---VVVPVGADQDPHLRLTRDL 228 (372)
T ss_dssp -HHHHHHHHHHTTSSCHHHHHHHHS---SCCHHHHHHHHHHHHHHHGGGSGGGTCCCC---EEEEEEGGGHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhhhHHHHhhhhh---ccCcccccCCcchhHHHhhhcCccccCccc---eecccchhhHHHHHHHHHH
Confidence 567777888999999999999886 468899999999999877766644444444 8999999999999999999
Q ss_pred HHHhC----CCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHH
Q 015880 252 APRIG----YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIP 327 (399)
Q Consensus 252 a~r~~----~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~ 327 (399)
|+|+| .++|+.++++++|||+| .|||||.+||+|+|+|+|++|++||++ |+||++.+.+++++.||+|++|++
T Consensus 229 A~rfn~~~~~~~P~~~~~~~~pgldG--~KmS~S~~ns~I~l~D~p~~i~kKI~k-a~td~~~~~~~~~~~~G~p~~~~i 305 (372)
T 3a04_A 229 ADRMAGVVELERPASTYHKLQPGLDG--RKMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEVCSV 305 (372)
T ss_dssp HHHTTTTSCCCCCEEEEECCCBCTTS--SBCCTTSGGGSCBTTCCHHHHHHHHHT-CCCSCCSSHHHHHHHCCCGGGCHH
T ss_pred HHHhcCcccccChhhhhhcccCCCCC--CccCCCCCCcccccCCCHHHHHHHHhc-CccCCCCCcccccccCCCCchhhH
Confidence 99998 57899999999999997 799999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHh-ccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhh
Q 015880 328 VKYLSF-FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 391 (399)
Q Consensus 328 ~~~l~~-f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~~l~~~~~~ 391 (399)
|+++.+ +..+++++++|+++|++|+++||+||+.|++.|+++|+|+|+||+++++ .+.+++..
T Consensus 306 ~~~~l~~~~~d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer~e~~~~-~~~kile~ 369 (372)
T 3a04_A 306 YHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQSRLEKAKT-IAWKLVEP 369 (372)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTSCCC
T ss_pred HHHHHHccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhcc
Confidence 998655 4568999999999999999999999999999999999999999999877 77776643
No 11
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=1.2e-64 Score=508.04 Aligned_cols=302 Identities=21% Similarity=0.257 Sum_probs=236.7
Q ss_pred cccccCCHHHHHHHHHhC-Ccee----EEEecCCCCCCccccchHHHHh-HHhHHhhCCCeEEEEecCcccccccCCCHH
Q 015880 66 VFFAHRDLNDILDAYEKG-EKFY----LYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLSVE 139 (399)
Q Consensus 66 i~~~~~d~~~ll~~~~~~-~~~~----iytG~~PTg~slHlGhlv~~~~-~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e 139 (399)
+-.+|||++.|++++++| +|++ +|+|++||| .||||||+|++. ..+||+ ++.++++|||+||+++ ..+++
T Consensus 11 ~~~~hrdld~il~~~e~g~~p~~m~~ri~sG~~PTG-~lHLGhyvGal~~~~~LQ~--~~~~~~~IaD~hAlt~-~~~~~ 86 (388)
T 3prh_A 11 IPNPLLGLDSTENLYFQGIDPFTMKQTIFSGIQPSG-SVTLGNYIGAMKQFVELQH--DYNSYFCIVDQHAITV-PQDRL 86 (388)
T ss_dssp ------------------------CCEEEEEECCCS-CCBHHHHHHTHHHHHHTTT--TSEEEEEECHHHHTTS-CCCHH
T ss_pred CCCccCCHHHHHHHHHcCCCCcccCCeEEEeeCCCC-cchHHHHHHHHHHHHHHHc--cCcEEEEEecceeeec-CCCHH
Confidence 346999999999999999 8998 999999999 599999999874 566997 6678888999999997 68999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEeccccCccchHHHHHHHHhhcCHHHHHHhhCCC------CCccccccchhhhhc
Q 015880 140 ESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT------GEDHIGKVSFPPVQA 213 (399)
Q Consensus 140 ~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~~------~~~~~g~~~YPllQa 213 (399)
++++++++++++|+|||+||+|++||.||+|.++ ....+.++..++++++.+..+|+ +++++|+|+||+|||
T Consensus 87 ~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~~~--~el~w~l~~~~~~~~L~R~~~fk~k~~~~~~~~~g~~~YPvLQA 164 (388)
T 3prh_A 87 ELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAH--AQAGWMMQCVAYIGELERMTQFKDKSKGNEAVVSGLLTYPPLMA 164 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTEEEEEGGGSTHH--HHHHHHHHTTSCHHHHHTTC----------CCBHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhHeEEEecccccch--HHHHHHHHhhccHHHHHhhhhHhHHhhccCCCcchhHhhHHHHH
Confidence 9999999999999999999999999999999853 23334455666666655544433 679999999999999
Q ss_pred CCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCCC------Ccceee---cccccCCCCCCCCCCCCCC-
Q 015880 214 VPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH------KPALIE---SSFFPALQGETGKMSASDP- 283 (399)
Q Consensus 214 ad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~------kp~~l~---~~~lp~L~g~g~KMSKS~~- 283 (399)
| ||+.+++ |+||||.||+||+++|||+|+|||+. .|..+. +.++|||+|+++|||||+|
T Consensus 165 A--------DIl~~~a---d~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~ 233 (388)
T 3prh_A 165 A--------DILLYGT---DLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPN 233 (388)
T ss_dssp H--------HHHTTTC---CEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSS
T ss_pred H--------HHHHhCC---CEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCC
Confidence 9 7888887 58999999999999999999999842 233332 4688999887789999997
Q ss_pred -CCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHH
Q 015880 284 -NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRL 362 (399)
Q Consensus 284 -nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~l 362 (399)
+|+|||+|+|++|++||++ |+|++..+++. +.+++|++|++++|+++| +++++++|+++|+ |. ++++||+.|
T Consensus 234 ~~n~I~L~D~p~~I~kKI~k-a~TD~~~~~~~--~~~~~p~v~~l~~i~~~~--~~~~~eel~~~y~-g~-~~g~lK~~l 306 (388)
T 3prh_A 234 QKAYITLLDEPKQLEKKIKS-AVTDSEGIVKF--DKENKPGVSNLLTIYSIL--GNTTIEELEAKYE-GK-GYGEFKGDL 306 (388)
T ss_dssp TTSCCBTTCCHHHHHHHHHT-CCCCSSCCCCC--CTTTCHHHHHHHHHHHHH--HTCCHHHHHHHTT-TC-CHHHHHHHH
T ss_pred CCCeeecCCCHHHHHHHHhh-ccCCCCCcccC--CCCCCCCcchHHHHHHhc--CCCcHHHHHHHHc-CC-CHHHHHHHH
Confidence 6899999999999999999 99998654432 357899999999999998 5678999999999 75 999999999
Q ss_pred HHHHHHHhhHHHHHHHHhhHH-HHHHHHhh
Q 015880 363 AKVLTELVERHQVARAAVTDE-MVDAFMAV 391 (399)
Q Consensus 363 a~~i~~~l~~~r~~~~~~~~~-~l~~~~~~ 391 (399)
|+.|+++|+|+|++|++++++ +|++++..
T Consensus 307 ae~l~~~l~pirer~~~~~~~~~l~~il~~ 336 (388)
T 3prh_A 307 AEVVVNALKPIQDRYYELIESEELDRILDE 336 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 999999999999999998743 68887754
No 12
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=2.6e-63 Score=497.53 Aligned_cols=295 Identities=22% Similarity=0.313 Sum_probs=263.2
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC--C
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~--~ 136 (399)
-.|++|| +..+.+.+.|.+.+++|+++++|+||+||| +|||||+++++.++|||++ |+.++++|||+||+++++ .
T Consensus 10 ~~l~~r~-~~e~~~~~~L~~~l~~~~~~~iy~G~~PTg-~lHlG~l~~l~~~~~lQ~~-G~~~~~~iaD~~a~~~~ps~~ 86 (364)
T 2cya_A 10 FNRIARN-TVEIVTEEELKGLLASGARIKGYIGYEPSG-VAHIGWLVWMYKVKDLVEA-GVDFSVLEATWHAYINDKLGG 86 (364)
T ss_dssp HHHHHTT-CSEEETHHHHHHHHHHCSCCEEEEEECCCS-SCBTHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTGGGG
T ss_pred HHHHHcC-chhcCCHHHHHHHHhcCCCCEEEeccCCCC-CccHhHHHHHHHHHHHHHC-CCCEEEEEeCcchhhCCCCCC
Confidence 4678999 777778888888889889999999999998 7999999999999999996 788999999999999873 7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCcc-chHHHHHHHHhhcCHHHHHHhh---CCC---CCccccccchh
Q 015880 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT---GEDHIGKVSFP 209 (399)
Q Consensus 137 ~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~-~~~~~~~~l~~~~t~~~~~~~~---g~~---~~~~~g~~~YP 209 (399)
+++++++|+++++++|+|||+||+++.||.||+|..+ .+|..++++++++|+++|+++. ++. .++++|+|+||
T Consensus 87 ~~e~i~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~~~~i~~g~~~YP 166 (364)
T 2cya_A 87 DMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYP 166 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHHTCHHHHHHHHHHHHTSCHHHHHTTC------CCGGGSCTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhcchHHHHHHHHHHCcCcHHHHHcCchhhhhhcCCCCccchhhhhH
Confidence 9999999999999999999999999999999999865 4788899999999999998764 322 35789999999
Q ss_pred hhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCC---------------C
Q 015880 210 PVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG---------------E 274 (399)
Q Consensus 210 llQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g---------------~ 274 (399)
+|||| ||+.++++ ++|+|.||+||++++||+|+|+|+++|.++++++||+|+| +
T Consensus 167 ~LQaa--------Dil~~~~~---~v~~G~DQ~~~~~l~rdla~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~ 235 (364)
T 2cya_A 167 LMQVS--------DIFYMDLD---IALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLA 235 (364)
T ss_dssp HHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEECCCBCSSCC---------------
T ss_pred HHHHh--------hHHhcCCC---EEeccchHHHHHHHHHHHHHHcCCCCceeeccceeeCCCccccccccccccccccc
Confidence 99999 78888875 8999999999999999999999999999999999999997 5
Q ss_pred CCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhccC------------------
Q 015880 275 TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE------------------ 336 (399)
Q Consensus 275 g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~------------------ 336 (399)
|+|||||+++++|||+|+|++|++||++ |||++.. ++.+.+++|+++|+.
T Consensus 236 g~KMSKS~~~~~I~L~d~p~~i~~Ki~~-a~td~~~-----------~~~~~v~~~~~~~~f~~~~~~~~i~r~~~~G~~ 303 (364)
T 2cya_A 236 EVKMSKSKPETAVFVVDSDDDIRRKIRK-AYCPAKQ-----------VQGNPVLEIARYILFARDGFTLRVDRPAKYGGP 303 (364)
T ss_dssp -CBCCSSSGGGSCBTTCCHHHHHHHHHT-SCCCTTC-----------CTTCHHHHHHHHTTTTSTTCCEECC--------
T ss_pred ccccCCCCCCCEeeccCCHHHHHHHHHh-CcCCCCC-----------CCCCcHHHHHHHHhcccccCceeeeccccccCC
Confidence 7999999888899999999999999999 9999753 344567899998752
Q ss_pred -ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHH
Q 015880 337 -DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 379 (399)
Q Consensus 337 -~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~ 379 (399)
+.+++++|+++|.+|+++++++|+.||++|+++|+|+|+++++
T Consensus 304 ~~~~~~~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~ 347 (364)
T 2cya_A 304 VEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLG 347 (364)
T ss_dssp CEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3358999999999999999999999999999999999999994
No 13
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.9e-63 Score=499.98 Aligned_cols=297 Identities=21% Similarity=0.302 Sum_probs=267.2
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccc-hHHHHhHHhHHhhCCCeEEEEecCcccccccC--
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGh-lv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-- 135 (399)
-.|++||++..+.+.+.|++.+++|+++++|+||+||| +||||| +++++.++|||++ |+.++++|||+||+++++
T Consensus 7 ~~l~~r~~~~e~~~~~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~yl~~l~~~~~lQ~~-G~~~~~~iaD~ha~~~~~~g 84 (375)
T 2cyc_A 7 INLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISG-YIHLGTGLMAGAKIADFQKA-GIKTRVFLADWHSWINDKLG 84 (375)
T ss_dssp HHHHHSTTEEEEETHHHHHHHHHHTCCCBEEEEECCCS-CCBHHHHHHHHHHHHHHHHT-TCBCEEEECHHHHHHTTGGG
T ss_pred HHHHhcCCceeecCHHHHHHHHhcCCCcEEEeCCCCCC-CcCchHHHHHHHHHHHHHHC-CCcEEEEecCcEEEcCCCCC
Confidence 46889998888888999999999988999999999998 899999 8888889999996 788899999999999874
Q ss_pred CCHHHHHHHH-HHHH----HHHHHcCCCCCceEEEeccccCccc-hHHHHHHHHhhcCHHHHHHhh---CCC--CCcccc
Q 015880 136 LSVEESQRLA-RENA----KDIIACGFDVTKTFIFSDFDYVGGA-FYKNMVKVAKCVTYNKVVGIF---GFT--GEDHIG 204 (399)
Q Consensus 136 ~~~e~i~~~~-~~~~----~~ilA~G~dp~kt~i~~~s~~~~~~-~~~~~~~l~~~~t~~~~~~~~---g~~--~~~~~g 204 (399)
.+++++++|+ .+++ ++|+|||+||+++.||.||+|.++. +|..+.++++++|+++|+++. ++. +++++|
T Consensus 85 ~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~k~r~~~~~i~~g 164 (375)
T 2cyc_A 85 GDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGEAIDFA 164 (375)
T ss_dssp GCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHHHHHTTSBHHHHHHTGGGGTCCCCTTCBTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhhhhhHHHHHHHHHhceeEHHHHhccchhhhhccCCCCChH
Confidence 6899999999 8888 8899999999999999999999764 788889999999999999875 432 458999
Q ss_pred ccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCC--------C-CcceeecccccCCCCC-
Q 015880 205 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--------H-KPALIESSFFPALQGE- 274 (399)
Q Consensus 205 ~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~--------~-kp~~l~~~~lp~L~g~- 274 (399)
+|+||+|||| ||+.++++ ++|||.||+||++++||+|+|+|+ . +|.++++++||+|+|+
T Consensus 165 ~f~YP~LQaa--------Dil~~~~~---~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~ 233 (375)
T 2cyc_A 165 KLIYPMMQVA--------DIFYQGVT---IAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPP 233 (375)
T ss_dssp HHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCS
T ss_pred HHHHHHHHHH--------HHHHhCCC---eecccchHHHHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcc
Confidence 9999999999 78888874 899999999999999999999998 4 7888899999999996
Q ss_pred ---------------CCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhcc-CC-
Q 015880 275 ---------------TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-ED- 337 (399)
Q Consensus 275 ---------------g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~-~~- 337 (399)
++|||||.|+|+|||+|+|++|++||++ |||++. +++.+.+++|+++|+ .+
T Consensus 234 ~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i~~KI~~-A~t~~~-----------~~~~~~v~~~~~~~~f~~~ 301 (375)
T 2cyc_A 234 KWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAR-----------EVRYNPVLDWVEYIIFREE 301 (375)
T ss_dssp SSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCCHHHHHHHHHH-SCCCTT-----------CCSSCHHHHHHHHTTTSSS
T ss_pred cccccchhhhhhhhhhhcccCCCCCCeeccCCCHHHHHHHHHH-hcCCCC-----------CCCCChHHHHHHHHhcCCC
Confidence 4899999988899999999999999999 999974 345567789999875 22
Q ss_pred -----------------hHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHh
Q 015880 338 -----------------DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 380 (399)
Q Consensus 338 -----------------~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~ 380 (399)
.+++++|+++|.+|+++++++|+.||++|+++|+|+|+++++.
T Consensus 302 ~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~ 361 (375)
T 2cyc_A 302 PTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKH 361 (375)
T ss_dssp SCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred CcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5679999999999989999999999999999999999999954
No 14
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=8.7e-63 Score=486.07 Aligned_cols=280 Identities=17% Similarity=0.207 Sum_probs=246.8
Q ss_pred ceeEEEecCCCCCCccccchHH-HHhHHhHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015880 85 KFYLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (399)
Q Consensus 85 ~~~iytG~~PTg~slHlGhlv~-~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 163 (399)
..++|+||+||| +||||||++ +...++||+ |+.++++|||+||++.+ .+.+++++++++++++|+|+|+||++++
T Consensus 3 ~~~vysG~~PTg-~lHlG~~lg~l~~~~~lQ~--g~~~~~~iaD~ha~~~~-~~~~~l~~~~~~~~~~~lA~Gldp~k~~ 78 (322)
T 3tzl_A 3 AMRVLTGLQPSG-DLHIGNYFGAIKQMVDAQE--KSQMFMFIANYHAMTSS-QDGEKLKQNSLKAAAAFLSLGIDPQKSV 78 (322)
T ss_dssp -CCBEEEECCSS-CCBHHHHHHTHHHHHHTTT--TSCCEEEECHHHHTTTC-CCHHHHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred ceEEEEccCCCc-cccHHHHHHHHHHHHHHhc--CCCEEEEEecCeeecCC-CCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 568999999999 899999996 557778998 67778889999999864 5899999999999999999999999999
Q ss_pred EEeccccCccchHHHHHHHHhhcCHHHHH------HhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeecc
Q 015880 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVV------GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (399)
Q Consensus 164 i~~~s~~~~~~~~~~~~~l~~~~t~~~~~------~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~ 237 (399)
||.||+|.+ .......++++++++++. .++++.+++|+|+|+||+|||| ||+.+++ |+|||
T Consensus 79 i~~qS~~~~--~~el~~~l~~~~~~~~l~r~~~~K~~~~~~~~~~~g~f~YP~LQAa--------Dil~~~~---~~vpv 145 (322)
T 3tzl_A 79 FWLQSDVKE--VMELYWILSQFTPMGLLERAHSYKDKVAKGLSASHGLFSYPVLMAA--------DILLFDT---RIVPV 145 (322)
T ss_dssp EEEGGGCTH--HHHHHHHHGGGCBHHHHHSCHHHHHHHHTTCCCBHHHHHHHHHHHH--------HHHHTTC---SEEEC
T ss_pred EEECCcchh--HHHHHHHHhccCcHHHHHhhhHHHHHHccCCCCchHHHHHHHHHHH--------HHHHhCC---cEEEe
Confidence 999999975 334445588888888664 4455567899999999999999 7888887 58999
Q ss_pred ccCchhHHHHHHHHHHHhCC------CCcceee---cccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCC
Q 015880 238 AIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 308 (399)
Q Consensus 238 G~DQd~~~~l~rdla~r~~~------~kp~~l~---~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~ 308 (399)
|.||+||++++||+|+|+|+ ++|..++ +++||+|+| +|||||++| +|||+|+|++|++||++ |+|++
T Consensus 146 G~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G--~KMSKS~~n-~I~L~d~p~~i~~KI~~-a~td~ 221 (322)
T 3tzl_A 146 GKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDG--AKMSKSYQN-TIDIFSSEKTLKKQISS-IVTDS 221 (322)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTS--SBCCGGGTC-CCBSSCCHHHHHHHHHT-CCCCC
T ss_pred ccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCC--CcCCCCCCC-ceecCCCHHHHHHHHHh-ccCCC
Confidence 99999999999999999985 5665554 799999997 899999998 99999999999999999 99999
Q ss_pred chhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHH--HHH
Q 015880 309 QESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVD 386 (399)
Q Consensus 309 ~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~--~l~ 386 (399)
..+. ..+||+++++++|+++|+ +++++++|+++|++|.++++++|+.||++|+++|+|+|++|++++++ +|+
T Consensus 222 ~~~~-----~~~~~~~~~v~~~~~~~~-~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~ 295 (322)
T 3tzl_A 222 TALE-----DPKDHENCNIFKIAKLFL-DESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLK 295 (322)
T ss_dssp CCTT-----SCCCGGGCHHHHHHGGGC-CHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHH
T ss_pred cccc-----CCCCCcchhHHHHHHHhC-ChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHH
Confidence 7652 246899999999999996 78899999999999889999999999999999999999999999864 899
Q ss_pred HHHhh
Q 015880 387 AFMAV 391 (399)
Q Consensus 387 ~~~~~ 391 (399)
+++..
T Consensus 296 ~il~~ 300 (322)
T 3tzl_A 296 EILDF 300 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98865
No 15
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=1.2e-62 Score=489.96 Aligned_cols=304 Identities=19% Similarity=0.309 Sum_probs=249.1
Q ss_pred hhHHhcCc--ccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccc-hHHHHhHHhHHhhCCCeEEEEecCcccccccC
Q 015880 59 HVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135 (399)
Q Consensus 59 ~~l~~Rgi--~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGh-lv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~ 135 (399)
-.+++||+ +++|++++.+| ++++++++|+||+||| +||||| +++++.++|||++ |+.++++|||+||+++++
T Consensus 15 ~~l~~r~~~e~~~~~~L~~~L---~~~~~~~vy~G~~PTg-~lHlGhyl~~l~~~~~lQ~~-G~~~~~~i~D~~a~~~~~ 89 (348)
T 2j5b_A 15 LTQLLSIAEECETLDRLKQLV---DSGRIFTAYNGFEPSG-RIHIAQALITVMNTNNMIEC-GGQMIIYIADWFAKMNLK 89 (348)
T ss_dssp HHHHHTTCSEESCHHHHHHHH---HHTCCEEEEEEECCCS-SCBHHHHHHHHHHHHHHHHT-TEEEEEEECHHHHHHTTG
T ss_pred HHHHHcCcccccCHHHHHHHH---hcCCCCEEEeccCCCC-CCchhHHHHHHHHHHHHHHc-CCcEEEEeccchhhhCCC
Confidence 46788997 45555565555 4478999999999997 999999 6788899999996 788999999999999875
Q ss_pred --CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCc-c-chHHHHHHHHhhcCHHHHHHh---hCCC--CCcccccc
Q 015880 136 --LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-G-AFYKNMVKVAKCVTYNKVVGI---FGFT--GEDHIGKV 206 (399)
Q Consensus 136 --~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~-~-~~~~~~~~l~~~~t~~~~~~~---~g~~--~~~~~g~~ 206 (399)
.+.+++++|+++++++|+|+|+||+++.||.||+|.. + .+|..+.++++++++++|+++ .++. +++|+|+|
T Consensus 90 ~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~~~~~~~~~~~~~v~~~~~~~~m~~~~~~~~r~~~~~i~~g~f 169 (348)
T 2j5b_A 90 MNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQI 169 (348)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHTC-----------------C
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhhhhhhHHHHHHHHHHhheeHHHHHhhhhhhhhhccCCcChHHH
Confidence 6999999999999999999999999999999999852 2 678888899999999999874 3432 46799999
Q ss_pred chhhhhcCCCCCCCcCccccc---CCCcceeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCC
Q 015880 207 SFPPVQAVPSFPSSFPHLFSG---KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 283 (399)
Q Consensus 207 ~YPllQaad~~~~~~~di~~~---~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~ 283 (399)
+||+|||| ||+.+ ++ +++|||.||+||++++||+|+|+|+..|.++++++||+|+|+.+|||||.+
T Consensus 170 ~YP~lQaa--------Dil~~~~~~~---~~~~~G~DQ~~~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~ 238 (348)
T 2j5b_A 170 FYPCMQAA--------DVFELVPEGI---DICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDP 238 (348)
T ss_dssp CHHHHHHH--------HHHHSSTTCC---SEECCBGGGHHHHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCG
T ss_pred hhHHHHHH--------HHHHHhcCCC---cEEEeccChHHHHHHHHHHHHHhCCCCceeecCccccCCCCcccccccCCC
Confidence 99999999 67878 55 478999999999999999999999998999999999999764589999998
Q ss_pred CCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhcc-----------CChHHHHHHHHHHhcCC
Q 015880 284 NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-----------EDDAELEHIKKEYGAGG 352 (399)
Q Consensus 284 nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~-----------~~~~eleei~~~~~~G~ 352 (399)
|++|||+|+|++|++||++ |+|++.. ++ +.++.|++++. .+.+++++|+++|+ |
T Consensus 239 ~~~I~L~d~p~~i~kKI~k-a~td~~~-----------~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~el~~~~~-~- 303 (348)
T 2j5b_A 239 QGAIFMDDTEQEVSEKISR-AYCTDET-----------FD-NPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFS-S- 303 (348)
T ss_dssp GGSCBTTCCHHHHHHHHHH-SCCCSSS-----------TT-CHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHHHT-T-
T ss_pred CCeEeecCCHHHHHHHHhc-ccCCCCC-----------CC-CchHhHHHHhhhhhhcccccccCCcchHHHHHHHHc-c-
Confidence 7799999999999999999 9999753 33 44566665531 14578999999999 6
Q ss_pred CChHHHHHHHHHHHHHHhhHHHHHHHHh----hHHHHHHHHhhCC
Q 015880 353 MLTGEVKQRLAKVLTELVERHQVARAAV----TDEMVDAFMAVRP 393 (399)
Q Consensus 353 ~~~~~~K~~la~~i~~~l~~~r~~~~~~----~~~~l~~~~~~~~ 393 (399)
++++++|+.||++|+++++|+|+++++. ..+.|++|+..||
T Consensus 304 ~~~~~~K~~la~~l~~~l~pir~~~~~~~~~~~~~~v~~~~~~~~ 348 (348)
T 2j5b_A 304 MNKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQQPSK 348 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHTCC---
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCCC
Confidence 8999999999999999999999997643 2347777775553
No 16
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=2e-62 Score=485.93 Aligned_cols=284 Identities=18% Similarity=0.252 Sum_probs=248.1
Q ss_pred eeEEEecCCCCCCccccchHHHHhHHh--HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015880 86 FYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (399)
Q Consensus 86 ~~iytG~~PTg~slHlGhlv~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 163 (399)
.++|+|++||| .||||||+|++ .+| ||+. +.++|+|||+||+++ ..+.+++++++++++++|+|||+||+|++
T Consensus 7 ~~v~sG~~PTG-~lHLGhy~g~l-~~~~~lQ~~--~~~~~~iaD~ha~~~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~ 81 (341)
T 3sz3_A 7 PIVLSGVQPSG-ELSIGNYLGAL-RQWQQMQDD--YDCQYCVVDLHAITV-RQDPQALHEATLDALAICLAVGVDPKKST 81 (341)
T ss_dssp CEEEEEECSSS-CCBHHHHHHTG-GGHHHHHHH--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred CEEEeCcCCCC-cccHHHHHHHH-HHHHHHHhc--CeEEEEEecceeEcC-CCCHHHHHHHHHHHHHHHHHcCCChhhcE
Confidence 47999999999 69999999986 556 9985 567888999999997 68999999999999999999999999999
Q ss_pred EEeccccCcc--chHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeec
Q 015880 164 IFSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 236 (399)
Q Consensus 164 i~~~s~~~~~--~~~~-----~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~ 236 (399)
||.||+|.++ .+|. .+.++.|+.++++...+++ +++++|+|+||+|||| ||+.+++ |+||
T Consensus 82 i~~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQaa--------Dil~~~a---d~vp 148 (341)
T 3sz3_A 82 LFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA--NDVNAGLFGYPVLMAA--------DILLYGA---HQVP 148 (341)
T ss_dssp EEEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG--GGCCHHHHHHHHHHHH--------HHHTTTC---SEEC
T ss_pred EEeccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc--CCCChhhHHhHHHHHH--------HHHHcCC---CEEE
Confidence 9999999853 2332 2566777777777766653 5799999999999999 7888887 5899
Q ss_pred cccCchhHHHHHHHHHHHhCC---------CCcceee---cccccCCCCCCCCCCCCCC--CCceeecCcHHHHHHHhcc
Q 015880 237 CAIDQDPYFRMTRDVAPRIGY---------HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINK 302 (399)
Q Consensus 237 ~G~DQd~~~~l~rdla~r~~~---------~kp~~l~---~~~lp~L~g~g~KMSKS~~--nsaI~L~D~~~~i~~KI~k 302 (399)
||.||+||+++|||+|+|+|. +.|..+. +++||||+++.+|||||+| +|+|||+|+|++|++||++
T Consensus 149 vG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~ 228 (341)
T 3sz3_A 149 VGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINK 228 (341)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHT
T ss_pred eccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhh
Confidence 999999999999999999982 2444332 5799999754479999998 6899999999999999999
Q ss_pred cccCCCchhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhH
Q 015880 303 YAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 382 (399)
Q Consensus 303 yA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~ 382 (399)
|+||+..+.+++++.+++|++|++++|+.+| +++++++|+++|+ |++++++||+.||+.|+++|+|+|++|+++.+
T Consensus 229 -a~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~--~~~~~e~i~~~~~-g~~~~g~~K~~lae~i~~~l~pirer~~~~~~ 304 (341)
T 3sz3_A 229 -AQTDAETPPRIAYDVENKAGIANLMGLYSAA--TGKTFAEIEAQYA-GVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRN 304 (341)
T ss_dssp -CCCCCCSSCCCCCCTTTCHHHHHHHHHHHHH--HCCCHHHHHHHTT-TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -ccCCCCCCcccccCCCCCcchhHHHHHHHHc--CCccHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999988777888899999999999999999 6678999999999 66899999999999999999999999999985
Q ss_pred H--HHHHHHhh
Q 015880 383 E--MVDAFMAV 391 (399)
Q Consensus 383 ~--~l~~~~~~ 391 (399)
+ +|++++..
T Consensus 305 ~~~~l~~il~~ 315 (341)
T 3sz3_A 305 DREYLNSVMRD 315 (341)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 4 89988865
No 17
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=9.1e-62 Score=482.05 Aligned_cols=286 Identities=21% Similarity=0.241 Sum_probs=248.8
Q ss_pred CceeEEEecCCCCCCccccchHHHH-hHHhHHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 015880 84 EKFYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (399)
Q Consensus 84 ~~~~iytG~~PTg~slHlGhlv~~~-~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt 162 (399)
...++|+|++||| +||||||+|++ ..++||++ |+.++++|||+||++++..+++++++++++++++|+|||+||+++
T Consensus 11 ~~~~v~~G~~PTG-~lHLGn~~g~l~~~~~lQ~~-G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~ 88 (340)
T 2g36_A 11 HHMRILSGMRPTG-KLHIGHLVGALENWVKLQEE-GNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKS 88 (340)
T ss_dssp -CCEEEEEECCCS-SCBHHHHHTHHHHHHHHHHT-TCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTS
T ss_pred CCCeEEEeeCCCC-cccHHhHHHHHHHHHHHHHC-CCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHe
Confidence 4578999999999 99999999986 55559996 677888899999999766777789999999999999999999999
Q ss_pred EEEeccccCccchHHHHHHHHhhcCHHHHHHhh---------CCCCCccccccchhhhhcCCCCCCCcCcccccCCCcce
Q 015880 163 FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF---------GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 233 (399)
Q Consensus 163 ~i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~---------g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~ 233 (399)
+||.||+|.+ +......+++.++++++.+.. +..+++++|+|+||+|||| ||+.+++ |
T Consensus 89 ~if~qS~~~~--~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAa--------Dil~~~~---~ 155 (340)
T 2g36_A 89 VIFVQSGVKE--HAELALLFSMIVSVSRLERVPTYKEIKSELNYKDLSTAGFLIYPVLQAA--------DILIYKA---E 155 (340)
T ss_dssp EEEEGGGCTH--HHHHHHHHHTTSCHHHHHTCHHHHTC-------CCCSHHHHTHHHHHHH--------HHHTTTC---S
T ss_pred EEEECCchHH--HHHHHHHHHccCCHHHHHHhHHHHhHHHHhccCCCCChHHhhhHHHHHh--------hHHHhCC---C
Confidence 9999999974 334445588888888765542 2245789999999999999 7888887 5
Q ss_pred eeccccCchhHHHHHHHHHHHhCC------CCccee--ecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhccccc
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRIGY------HKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAF 305 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~~~------~kp~~l--~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~ 305 (399)
+||||.||+||++++||+|+|+|+ ++|..+ ++++||+|+| +|||||++| +|||+|+|++|++||++ |+
T Consensus 156 ~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG--~KMSKS~~n-~I~L~dsp~~i~~Ki~~-a~ 231 (340)
T 2g36_A 156 GVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDG--RKMSKSYGN-IINLEISEKELEQTILR-MM 231 (340)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTS--SCCCGGGTC-CCBTTCCHHHHHHHHHT-CC
T ss_pred EEEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCc--cccCCCCCC-eEeeeCCHHHHHHHHHh-CC
Confidence 899999999999999999999873 567644 4799999997 599999998 89999999999999999 99
Q ss_pred CCCchhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHH--
Q 015880 306 SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-- 383 (399)
Q Consensus 306 t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~-- 383 (399)
|++.. +++..|++|++|++++|+++|+.+.+++++|+++|.+|.+++++||+.||++|+++|+|+|++|++++++
T Consensus 232 td~~~---~~~~~~~~p~~~~v~~~~~~f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~ 308 (340)
T 2g36_A 232 TDPAR---VRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPH 308 (340)
T ss_dssp CCTTC---SSTTSCCCGGGCHHHHHHHHTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCccc---ccccCCCCCchhHHHHHHHHHCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 99854 5677789999999999999997678889999999999989999999999999999999999999999985
Q ss_pred HHHHHHhh
Q 015880 384 MVDAFMAV 391 (399)
Q Consensus 384 ~l~~~~~~ 391 (399)
+|++++..
T Consensus 309 ~~~~il~~ 316 (340)
T 2g36_A 309 YVDDVIME 316 (340)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89988864
No 18
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=2.2e-61 Score=484.20 Aligned_cols=302 Identities=16% Similarity=0.204 Sum_probs=257.5
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHH-HhHHhHHhhCCCeEEEEecCcccccccC--
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPF-MFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~-~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-- 135 (399)
-.+++||+.. +.+.+.|.+.+++|+++++|+||+||| +|||||.+.. +.+++||++ |+.++++|||+||+++++
T Consensus 31 ~~li~r~~~e-~~~~~~L~~~L~~~~~~~iy~G~~PTg-~lHlG~gvl~~~~~~~lQ~~-G~~~~~lIaD~ha~i~d~~~ 107 (373)
T 3vgj_A 31 LNDILSISSE-CIQPDELRVKLLLKRKLICYDGFEPSG-RMHIAQGLLKSIIVNKLTSN-GCTFIFWIADWFAHLNNKMS 107 (373)
T ss_dssp HHHHHHHCSE-EECHHHHHHHHHHCSSCEEEEEECCCS-SCBHHHHHHHHHHHHHHHTT-TCEEEEEECHHHHHHTTGGG
T ss_pred HHHHHcCcce-ecCHHHHHHHHhcCCCceEEeCCCCCC-CceehhhHHHHHHHHHHHHC-CCcEEEEEecceeEecCCCC
Confidence 4678899864 344455666667788999999999999 8999997643 357889996 889999999999999863
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC-c--cchHHHHHHHHhhcCHHHHHHhh---CCC--CCccccccc
Q 015880 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-G--GAFYKNMVKVAKCVTYNKVVGIF---GFT--GEDHIGKVS 207 (399)
Q Consensus 136 ~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~-~--~~~~~~~~~l~~~~t~~~~~~~~---g~~--~~~~~g~~~ 207 (399)
.+.+++++++.++++.|+|+|+||+++.||.||+|. + ..+|..+.++++++|+++|+++. ++. +++++|+|+
T Consensus 108 ~~~~~i~~~~~~~~~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~~~~~~~g~f~ 187 (373)
T 3vgj_A 108 GDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSEGEENYCSQIL 187 (373)
T ss_dssp GCHHHHHHHHHHHHHHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCTTSCCBTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhccCCCChHHHH
Confidence 789999999999999999999999999999999997 3 35788888999999999999864 333 479999999
Q ss_pred hhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCCC-CcceeecccccCCCCCCCCCCCCCCCCc
Q 015880 208 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSA 286 (399)
Q Consensus 208 YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~-kp~~l~~~~lp~L~g~g~KMSKS~~nsa 286 (399)
||+|||| ||+.++++ ++|||.||+||++++||+|+|+|+. +|.++++++||+|+++.+|||||+|||+
T Consensus 188 YPlLQaa--------Dil~l~ad---~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~ 256 (373)
T 3vgj_A 188 YPCMQCA--------DIFFLNVD---ICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSA 256 (373)
T ss_dssp HHHHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCC
T ss_pred HHHHHHh--------cccccCCc---EEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCe
Confidence 9999999 78889885 7899999999999999999999986 7888899999999432479999998889
Q ss_pred eeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchH----HHHHHHhcc-C---------ChHHHHHHHHHHhcCC
Q 015880 287 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI----PVKYLSFFL-E---------DDAELEHIKKEYGAGG 352 (399)
Q Consensus 287 I~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v----~~~~l~~f~-~---------~~~eleei~~~~~~G~ 352 (399)
|||+|+|++|++||++ |||++.. .++||.++. +|.++..|. + +++++++|+++|.+|+
T Consensus 257 I~L~D~p~~i~~KI~k-A~td~~~-------~~~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~~~~~~eel~~~~~~g~ 328 (373)
T 3vgj_A 257 IFMDDSESDVNRKIKK-AYCPPNV-------IENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGF 328 (373)
T ss_dssp CBTTCCHHHHHHHHHH-SCCCTTC-------CTTCHHHHHHHHTHHHHHSSEEECCCGGGTCCEEECCHHHHHHHHHTTS
T ss_pred eecCCCHHHHHHHHHh-CcCCCCC-------CCCCcchhhhhhhhhhhhhhhcccccccccCCcCcccHHHHHHHHHcCC
Confidence 9999999999999999 9999753 256776643 455555552 1 2468999999999999
Q ss_pred CChHHHHHHHHHHHHHHhhHHHHHHHHhhH
Q 015880 353 MLTGEVKQRLAKVLTELVERHQVARAAVTD 382 (399)
Q Consensus 353 ~~~~~~K~~la~~i~~~l~~~r~~~~~~~~ 382 (399)
++|++||+.||+.|+++|+|+|+++++..+
T Consensus 329 l~~~dlK~~lae~i~~~l~Pire~~~~~~~ 358 (373)
T 3vgj_A 329 IHPLDLKDNVAMYINKLLQPVRDHFQNNIE 358 (373)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999997543
No 19
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=1.9e-62 Score=484.05 Aligned_cols=290 Identities=17% Similarity=0.202 Sum_probs=252.0
Q ss_pred hhhHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC--
Q 015880 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (399)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-- 135 (399)
.+.|++||++++|+|++.|+++++ ++++++|+||+|||+|||||||++++.++|||++ |+.++++|||+||++.++
T Consensus 7 ~~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~~PTg~slHlGh~l~l~~~~~lQ~~-g~~~~~~i~D~~a~~~dp~g 84 (322)
T 2yxn_A 7 IKQLQERGLVAQVTDEEALAERLA-QGPIALVCGFDPTADSLHLGHLVPLLCLKRFQQA-GHKPVALVGGATGLIGDPSF 84 (322)
T ss_dssp HHHHHHTTCCSEESSHHHHHHHHH-HSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHT-TCEEEEEECTTGGGTCCCTT
T ss_pred HHHHHHCCceeeeCCHHHHHHHHc-CCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHc-CCcEEEEEccceeeecCCCC
Confidence 478999999999999999999998 5789999999999977999999999999999997 667788899999998643
Q ss_pred -------CCHHHHHHHH---HHHHHHHHHcCCCCCceEEEeccccCccchHHHHHH-HHhhcCHHH------HHHhhCC-
Q 015880 136 -------LSVEESQRLA---RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNK------VVGIFGF- 197 (399)
Q Consensus 136 -------~~~e~i~~~~---~~~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~-l~~~~t~~~------~~~~~g~- 197 (399)
++.+++++|+ ++++++|+|||+||++++||+||+|+.+..+..+++ +++++++++ +++++++
T Consensus 85 ~~~~R~~l~~e~i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~ 164 (322)
T 2yxn_A 85 KAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRE 164 (322)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCT
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccC
Confidence 3999999999 888999999999999999999999986655555554 666666654 4455654
Q ss_pred CCCccccccchhhhhcCCCCCCCcCcccccCCCcceeecc-ccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCC
Q 015880 198 TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC-AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETG 276 (399)
Q Consensus 198 ~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~-G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~ 276 (399)
.+++|+|+|+||+|||| ||+.+..+++|.||+ |.||+||++++||+|+|+|..++..++.++||+|+| +
T Consensus 165 ~~~is~g~f~YP~LQaa--------Dil~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG--~ 234 (322)
T 2yxn_A 165 DQGISFTEFSYNLLQGY--------DFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADG--T 234 (322)
T ss_dssp TCCCCHHHHTHHHHHHH--------HHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTS--C
T ss_pred CCCccchhhhHHHHHHH--------HHHHHhccCCceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCc--c
Confidence 35789999999999999 788884333466765 999999999999999999998888899999999997 7
Q ss_pred CCCCCCCCCceeecC---cHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhccC-ChHHHHHHHHHHhcCC
Q 015880 277 KMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGG 352 (399)
Q Consensus 277 KMSKS~~nsaI~L~D---~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~-~~~eleei~~~~~~G~ 352 (399)
|||||.+| +|||+| +|+++++||++ + +.+.+++||++|+. +++++++|+++|++|.
T Consensus 235 KMSKS~~n-~I~L~d~~tsp~~~~~ki~~-~------------------~d~~v~~~l~~~~~~~~~~i~~l~~~~~~g~ 294 (322)
T 2yxn_A 235 KFGKTEGG-AVWLDPKKTSPYKFYQFWIN-T------------------ADADVYRFLKFFTFMSIEEINALEEEDKNSG 294 (322)
T ss_dssp BTTEETTE-ECBSSTTTSCHHHHHHHHHT-C------------------CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHS
T ss_pred cccCCCCC-eeeccCCCCCHHHHHHHHhC-C------------------CcccHHHHHHHHHcCCHHHHHHHHHHHHcCC
Confidence 99999998 999999 99999999998 3 12456899999874 8999999999999986
Q ss_pred CChHHHHHHHHHHHHHHhhHHHHHHHHh
Q 015880 353 MLTGEVKQRLAKVLTELVERHQVARAAV 380 (399)
Q Consensus 353 ~~~~~~K~~la~~i~~~l~~~r~~~~~~ 380 (399)
+++++|+.||++|++++||+++++++.
T Consensus 295 -~~~~~K~~La~~i~~~l~~~~~~~~a~ 321 (322)
T 2yxn_A 295 -KAPRAQYVLAEQVTRLVHGEEGLQAAK 321 (322)
T ss_dssp -SCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -CHHHHHHHHHHHHHHHhCCHHHHHHhh
Confidence 999999999999999999999998764
No 20
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=1.3e-61 Score=482.74 Aligned_cols=288 Identities=26% Similarity=0.302 Sum_probs=250.7
Q ss_pred CCceeEEEecCCCCCCccccchHHHHhHHh--HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 015880 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVT 160 (399)
Q Consensus 83 ~~~~~iytG~~PTg~slHlGhlv~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~ 160 (399)
++++++|+||+||| .||||||+|++ .+| ||+. +.++++|||+|+++.++.+.+++++|+++++++|+|||+||+
T Consensus 20 ~~~~~vysG~~PTG-~lHLGn~~g~l-~~~~~lQ~~--~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~ 95 (351)
T 1yi8_B 20 PARPRVLTGDRPTG-ALHLGHLAGSL-QNRVRLQDE--AELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQ 95 (351)
T ss_dssp -CCSEEEEEECCSS-CCBHHHHHHTH-HHHHHHTSS--SEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCcEEEEeeCCCC-CccHHHHHHHH-HHHHHHHHh--CCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChh
Confidence 46789999999999 59999999986 777 9986 456778899999997779999999999999999999999999
Q ss_pred ceEEEeccccCccc--hH-----HHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcce
Q 015880 161 KTFIFSDFDYVGGA--FY-----KNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 233 (399)
Q Consensus 161 kt~i~~~s~~~~~~--~~-----~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~ 233 (399)
+++||.||+|.++. .| ..+.++.|+.++++..++.||.+++++|+|+||+|||| ||+.+++ |
T Consensus 96 k~~i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAa--------Dil~~~~---~ 164 (351)
T 1yi8_B 96 KTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAA--------DIAAFGA---T 164 (351)
T ss_dssp TEEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHH--------HHHHHTC---S
T ss_pred hcEEEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHh--------hHHhcCC---C
Confidence 99999999998531 11 02445555555555556667778899999999999999 7888887 5
Q ss_pred eeccccCchhHHHHHHHHHHHhC------CCCccee--ecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhccccc
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRIG------YHKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAF 305 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~~------~~kp~~l--~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~ 305 (399)
+||||.||+||++++||+|+|+| +++|..+ ++++||+|+| ++|||||++| +|||+|+|++|++||++ |+
T Consensus 165 ~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~ 241 (351)
T 1yi8_B 165 LVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGDSADEVARKVMG-MY 241 (351)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTS-SSCCCTTTTC-CCBTTCCHHHHHHHHHT-CC
T ss_pred EEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCC-ccccCCCCCC-eecCCCCHHHHHHHHHh-cC
Confidence 89999999999999999999986 4677654 3799999997 3699999999 99999999999999999 99
Q ss_pred CCCchhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHH--
Q 015880 306 SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-- 383 (399)
Q Consensus 306 t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~-- 383 (399)
|++. ++++..|+||+.++++.|+++|+.+.+++++|+++|.+|+++|+++|+.||++|+++|+|+|++|++++++
T Consensus 242 td~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~ 318 (351)
T 1yi8_B 242 TDPG---HLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPD 318 (351)
T ss_dssp CCTT---CCSTTSCCCCTTCTTHHHHHHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CCcc---cccccCCCCCccchHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHH
Confidence 9985 45677889999999999999998778889999999999999999999999999999999999999999874
Q ss_pred HHHHHHhh
Q 015880 384 MVDAFMAV 391 (399)
Q Consensus 384 ~l~~~~~~ 391 (399)
+|++++..
T Consensus 319 ~l~~il~~ 326 (351)
T 1yi8_B 319 AVLRFVTE 326 (351)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89988864
No 21
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=1.7e-61 Score=479.52 Aligned_cols=284 Identities=18% Similarity=0.281 Sum_probs=244.9
Q ss_pred ceeEEEecCCCCCCccccchHHHHhHHh--HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 015880 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (399)
Q Consensus 85 ~~~iytG~~PTg~slHlGhlv~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt 162 (399)
..++|+|++||| .||||||+|++ .+| ||+. +.++|+|||+||+++ ..+.+++++++++++++|+|||+||+|+
T Consensus 15 ~~~i~sG~~PTG-~lHLGh~vg~l-~~~~~lQ~~--~~~~~~iaD~hA~t~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~ 89 (346)
T 3n9i_A 15 KPIVFSGAQPSG-ELTIGNYMGAL-RQWVQMQDD--YDCIYCIVDLHAITA-RQDPALLRKRTLDTLALYLACGIDPKKS 89 (346)
T ss_dssp CCEEEEEECSCS-CCBHHHHHHTH-HHHHTTTTT--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHHTCCTTTS
T ss_pred CCEEEECcCCCC-cccHHHHHHHH-HHHHHHHhh--CcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 458999999999 59999999986 677 8984 678888999999996 5899999999999999999999999999
Q ss_pred EEEeccccCcc--chHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceee
Q 015880 163 FIFSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI 235 (399)
Q Consensus 163 ~i~~~s~~~~~--~~~~-----~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v 235 (399)
+||.||+|.++ .+|. .+.++.|+.++++...+. .+++++|+|+||+|||| ||+.+++ |+|
T Consensus 90 ~if~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~--~~~~~~g~~~YP~lQAa--------Dil~~~a---d~v 156 (346)
T 3n9i_A 90 TIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARY--AENINAGLFDYPVLMAA--------DILLYQT---NQV 156 (346)
T ss_dssp EEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHS--GGGCBHHHHHHHHHHHH--------HHHTTTC---SEE
T ss_pred EEEeccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhcc--CCCCCchhHHhHHHHHH--------HHHHhCc---eEE
Confidence 99999999864 2332 245666666666555443 25789999999999999 7888887 689
Q ss_pred ccccCchhHHHHHHHHHHHhCC------CCcceee---cccccCCCCCCCCCCCCCCC--CceeecCcHHHHHHHhcccc
Q 015880 236 PCAIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYA 304 (399)
Q Consensus 236 ~~G~DQd~~~~l~rdla~r~~~------~kp~~l~---~~~lp~L~g~g~KMSKS~~n--saI~L~D~~~~i~~KI~kyA 304 (399)
|||.||+||+++|||+|+|+|+ +.|..+. +++||||+++++|||||++| |+|||+|+|++|++||++ |
T Consensus 157 pvG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~k-A 235 (346)
T 3n9i_A 157 PVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKR-A 235 (346)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHT-C
T ss_pred EeccchHHHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHh-C
Confidence 9999999999999999999983 4555444 47999997645799999996 899999999999999999 9
Q ss_pred cCCCchhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHH-
Q 015880 305 FSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE- 383 (399)
Q Consensus 305 ~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~- 383 (399)
||++..+.+++++.+++|++++++.|+..| +++++++|+++|++| ++++||+.||+.|+++|+|+|++|++++++
T Consensus 236 ~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~--~~~~~eel~~~y~~~--~~g~lK~~lae~l~~~L~pirer~~~~~~~~ 311 (346)
T 3n9i_A 236 MTDSDEPALIRYDVEKKAGVSNLLDILSGV--TGQSIPELEAQFTGQ--MYGHLKGAVADAVSGMLSELQERYRTYREDE 311 (346)
T ss_dssp CCCCCSSCCCCCCTTTCHHHHHHHHHHHHH--HCCCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred cCCCCCCccccCCCCCCCChhHHHHHHHhc--CCccHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 999987656677889999999999999988 567899999999876 599999999999999999999999999864
Q ss_pred -HHHHHHhh
Q 015880 384 -MVDAFMAV 391 (399)
Q Consensus 384 -~l~~~~~~ 391 (399)
+|++++..
T Consensus 312 ~~l~~il~~ 320 (346)
T 3n9i_A 312 ALLQDVMRE 320 (346)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 89988865
No 22
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=9.7e-61 Score=474.35 Aligned_cols=284 Identities=20% Similarity=0.209 Sum_probs=237.4
Q ss_pred eEEEecCCCCCCccccchHHHH-hHHhHHhhCCCeEEEEecCccccccc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015880 87 YLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFI 164 (399)
Q Consensus 87 ~iytG~~PTg~slHlGhlv~~~-~~~~lQ~~~~~~v~I~I~D~~a~~~~-~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 164 (399)
++|+||+||| +|||||++|++ ...+||+++++.++++|||+|+++.+ ..+++++++++++++++|+|+|+||+++.|
T Consensus 3 ~vy~G~~PTg-~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 3 RVLSGIQPSG-EIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CEEEEECSCS-CCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred EEEEeeCCCC-cccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 7999999998 69999999885 33447997326778889999999976 388999999999999999999999999999
Q ss_pred EeccccCccchHHHHHHHHhhcCHHHHHHhh------CCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccc
Q 015880 165 FSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF------GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 238 (399)
Q Consensus 165 ~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~------g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G 238 (399)
|.||+|++ .......++++++++++.+.. ...+++|+|+|+||+|||| ||+.+++ |+||||
T Consensus 82 ~~qS~~~~--~~el~~~l~~~~~~~~l~r~~~~k~r~~~~~~~~~g~f~YPvLQaa--------Dil~~~~---~lvp~G 148 (337)
T 2el7_A 82 FVQSHVPE--HTELSWVFTTLTPLGDLTRMTQFKDKASKQETVWSGLLMYPVLQAA--------DILIYKA---DTVPVG 148 (337)
T ss_dssp EEGGGSTH--HHHHHHHHHHTSBHHHHHTSHHHHHHTTSSSCCBHHHHHHHHHHHH--------HHHHTTC---CEEECC
T ss_pred EEcCcchh--hHHHHHHHHccCCHHHHHHhHHHHHHhccCCCCChHHHHhHHHHHh--------hHHhhCC---cEEEcc
Confidence 99999975 223333477788887766543 3356899999999999999 7888887 589999
Q ss_pred cCchhHHHHHHHHHHHhC------CCCcceeec---ccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCc
Q 015880 239 IDQDPYFRMTRDVAPRIG------YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ 309 (399)
Q Consensus 239 ~DQd~~~~l~rdla~r~~------~~kp~~l~~---~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~ 309 (399)
.||+||++++||+|+|+| +++|..+++ ++||+|+| .+|||||.+| +|||+|+|++|++||++ |+|++.
T Consensus 149 ~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~~ 225 (337)
T 2el7_A 149 EDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLLEPEESIWQKIQH-LPDDPQ 225 (337)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTS-SSBCCTTTTC-CCBSSSCHHHHHHHHHT-CCCCC-
T ss_pred cchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCC-ccccCCCCCC-eeeCcCCHHHHHHHHHh-CCCCCc
Confidence 999999999999999985 577887765 89999998 5899999999 99999999999999999 999987
Q ss_pred hhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHH--HHHH
Q 015880 310 ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDA 387 (399)
Q Consensus 310 ~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~--~l~~ 387 (399)
.+++ ..+++|++|++++|+++|+ +++++++|+++|.+|.++++++|+.||++|+++++|+|++|++++++ +|++
T Consensus 226 ~~~~---~~~~~p~~~~v~~~~~~~t-~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~ 301 (337)
T 2el7_A 226 RIRL---SDPGDPERTILFTYLSYFA-PKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMD 301 (337)
T ss_dssp ---------------CHHHHHHHHHS-CHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccc---cCCCCCchhhHHHHHHHcC-ChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHH
Confidence 6554 3567899999999999994 34699999999999889999999999999999999999999999875 8999
Q ss_pred HHhh
Q 015880 388 FMAV 391 (399)
Q Consensus 388 ~~~~ 391 (399)
++..
T Consensus 302 il~~ 305 (337)
T 2el7_A 302 ALLE 305 (337)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 23
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=9.7e-61 Score=472.75 Aligned_cols=280 Identities=21% Similarity=0.300 Sum_probs=241.1
Q ss_pred eeEEEecCCCCCCccccchHHHHhHHh--HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015880 86 FYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (399)
Q Consensus 86 ~~iytG~~PTg~slHlGhlv~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 163 (399)
.++|+||+||| +|||||++|++ .+| ||+ |+.++++|||+||+++ +.+.+++++|+++++++|+|+|+||+++.
T Consensus 2 ~~vysG~~PTG-~lHlGn~vg~l-~~~~~lQ~--g~~~~~~IaD~ha~~~-~~~~e~i~~~~~~~~~~~la~Gldp~k~~ 76 (328)
T 1i6k_A 2 KTIFSGIQPSG-VITIGNYIGAL-RQFVELQH--EYNCYFCIVDQHAITV-WQDPHELRQNIRRLAALYLAVGIDPTQAT 76 (328)
T ss_dssp CEEEEEECCCS-CCBHHHHHHTH-HHHHHHTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEE
T ss_pred CEEEEeeCCCC-cccHHHHHHHH-HHHHHHHc--CCcEEEEEeCceeecC-CCCHHHHHHHHHHHHHHHHHhCCChhhcE
Confidence 37999999998 99999999986 666 587 5677888999999997 78999999999999999999999999999
Q ss_pred EEeccccCcc--chHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceeec
Q 015880 164 IFSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 236 (399)
Q Consensus 164 i~~~s~~~~~--~~~~-----~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~ 236 (399)
||.||+|.++ ..|. .+.++.|+.++++..++ .+++++|+|+||+|||| ||+.+++ |+||
T Consensus 77 if~qS~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~---~~~~~~g~f~YPvLQaa--------Dil~~~~---~~vp 142 (328)
T 1i6k_A 77 LFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG---KEAVSAGLLTYPPLMAA--------DILLYNT---DIVP 142 (328)
T ss_dssp EEEGGGCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT---CSSCCHHHHTHHHHHHH--------HHHTTTC---SEEE
T ss_pred EEecCchhhhhHHHHHHhccccHHHHHHHHHHHHHHhc---cCCCCchhhccHHHHHH--------HHHHhCC---CEEe
Confidence 9999999753 1221 24456666666554433 26899999999999999 7888887 5899
Q ss_pred cccCchhHHHHHHHHHHHhC------CCCcceee---cccccCCCCCCCCCCCCCCCCc--eeecCcHHHHHHHhccccc
Q 015880 237 CAIDQDPYFRMTRDVAPRIG------YHKPALIE---SSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKINKYAF 305 (399)
Q Consensus 237 ~G~DQd~~~~l~rdla~r~~------~~kp~~l~---~~~lp~L~g~g~KMSKS~~nsa--I~L~D~~~~i~~KI~kyA~ 305 (399)
||.||+||++++||+|+|+| +++|..++ +++||+|+|+++|||||++|++ |||+|+|++|++||++ |+
T Consensus 143 vG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~-a~ 221 (328)
T 1i6k_A 143 VGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AV 221 (328)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH-CC
T ss_pred cccchHHHHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHh-cC
Confidence 99999999999999999998 55776554 6999999997789999999977 9999999999999999 99
Q ss_pred CCCchhhHHHhhcCCCCcchHHHHHHHhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHH-H
Q 015880 306 SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-M 384 (399)
Q Consensus 306 t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~-~ 384 (399)
|++..++.++ .+++|++|++++|+++| +++++++|+++|. | ++++++|+.||++|+++++|+|++|++++++ .
T Consensus 222 td~~~~~~~~--~~~~p~v~~~~~~~~~~--~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~ 295 (328)
T 1i6k_A 222 TDSEGTIRYD--KEAKPGISNLLNIYSTL--SGQSIEELERQYE-G-KGYGVFKADLAQVVIETLRPIQERYHHWMESEE 295 (328)
T ss_dssp CCSSCCCCCB--TTTBHHHHHHHHHHHHH--HCCCHHHHHHHTT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTH
T ss_pred CCCccccccC--CCCCcchhhHHHHHHHC--CchhHHHHHHHHc-C-CCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChh
Confidence 9987654433 36789999999999999 6789999999999 8 8999999999999999999999999999864 3
Q ss_pred HHHHHhh
Q 015880 385 VDAFMAV 391 (399)
Q Consensus 385 l~~~~~~ 391 (399)
|++++..
T Consensus 296 ~~~il~~ 302 (328)
T 1i6k_A 296 LDRVLDE 302 (328)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887754
No 24
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=7.9e-61 Score=476.68 Aligned_cols=285 Identities=19% Similarity=0.245 Sum_probs=241.0
Q ss_pred CceeEEEecCCCCCCccccchHHHHhHHh--HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 015880 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTK 161 (399)
Q Consensus 84 ~~~~iytG~~PTg~slHlGhlv~~~~~~~--lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~k 161 (399)
.++++|+||+||| +|||||+++++ .+| ||+ ++.++++|||+||++++ .+++++++++++++++|+|+|+||++
T Consensus 3 ~~~~i~sG~~PTG-~lHLGn~vg~l-~~~~~lQ~--~~~~~~~IaD~ha~~~~-~d~~~i~~~~~~~~~~~lA~Gldp~k 77 (348)
T 2yy5_A 3 MMKRALTGIQASG-KQHLGNYLGVM-QSLIELQE--QCQLFVFVADLHSITVD-FQPQALKQNNFDLVRTLLAVGLDPQK 77 (348)
T ss_dssp -CCEEEEEECCCT-TCBHHHHHHTG-GGHHHHHH--HSEEEEEECHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCCTTT
T ss_pred CCeEEEEeeCCCC-cccHHHHHHHH-HHHHHHHh--CCcEEEEEcChhhccCC-CCHHHHHHHHHHHHHHHHHhCCChhH
Confidence 3578999999998 99999999986 777 998 56788889999999975 89999999999999999999999999
Q ss_pred eEEEeccccCcc--chHH-----HHHHHHhhcCHHHHHHhhCC----CCCccccccchhhhhcCCCCCCCcCcccccCCC
Q 015880 162 TFIFSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230 (399)
Q Consensus 162 t~i~~~s~~~~~--~~~~-----~~~~l~~~~t~~~~~~~~g~----~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~ 230 (399)
+.||.||+|+++ ..|. .+.++.|+.++++..++.+| .+++++|+|+||+|||| ||+.+++
T Consensus 78 ~~if~qS~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaa--------Dil~~~a- 148 (348)
T 2yy5_A 78 ACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAG--------DILLYQP- 148 (348)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHH--------HHHTTCC-
T ss_pred eEEEECCcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHH--------HHHHhCc-
Confidence 999999999753 1221 13344555544433322222 46799999999999999 7888887
Q ss_pred cceeeccccCchhHHHHHHHHHHHhC------CCCcceee---cccccCCCCCCCCCCCCCCCC--ceeecCcHHHHHHH
Q 015880 231 LRCLIPCAIDQDPYFRMTRDVAPRIG------YHKPALIE---SSFFPALQGETGKMSASDPNS--AIYVTDSAKAIKNK 299 (399)
Q Consensus 231 ~~~~v~~G~DQd~~~~l~rdla~r~~------~~kp~~l~---~~~lp~L~g~g~KMSKS~~ns--aI~L~D~~~~i~~K 299 (399)
|+||||.||+||++++||+|+|+| +++|..++ +++||||+|+.+|||||++|+ +|||+|+|++|++|
T Consensus 149 --~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~K 226 (348)
T 2yy5_A 149 --DIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKK 226 (348)
T ss_dssp --SEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHH
T ss_pred --cEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHH
Confidence 589999999999999999999997 56787777 699999999778999999995 99999999999999
Q ss_pred hcccccCCCchhhHHHhhcCCCCcchHHHHHHHhccCChHHHH---------HHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 015880 300 INKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELE---------HIKKEYGAGGMLTGEVKQRLAKVLTELV 370 (399)
Q Consensus 300 I~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~~~~~ele---------ei~~~~~~G~~~~~~~K~~la~~i~~~l 370 (399)
|++ |+|++..++.++ .+++|+++++++|+++| ++++++ +|+++|. | ++++++|+.||++|++++
T Consensus 227 I~~-a~td~~~~~~~~--~~~~p~v~~~~~~~~~~--~~~~~~~~~~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l 299 (348)
T 2yy5_A 227 IRQ-ATTDSFNKIRFA--SKTQPGVTNMLTILKAL--LKEPVNQSLTNQLGNDLEAYFS-T-KSYLDLKNALTEATVNLL 299 (348)
T ss_dssp HHT-CCCCSSCCCSCC--TTTCHHHHHHHHHHHHH--TTSGGGHHHHHHHCSCHHHHGG-G-CCHHHHHHHHHHHHHHHH
T ss_pred HHh-CCCCCccccccC--CCCCCchhhHHHHHHhC--ChHhhhhhcccchHHHHHHHHc-C-CCHHHHHHHHHHHHHHHH
Confidence 999 999997555443 57789999999999999 678899 9999999 8 899999999999999999
Q ss_pred hHHHHHHHHhhHHHHHHHHhh
Q 015880 371 ERHQVARAAVTDEMVDAFMAV 391 (399)
Q Consensus 371 ~~~r~~~~~~~~~~l~~~~~~ 391 (399)
+|+|++|++++|..|+++|..
T Consensus 300 ~pire~~~~~~d~~~~~~l~~ 320 (348)
T 2yy5_A 300 VNIQRKREQISREQVFNCLQA 320 (348)
T ss_dssp HHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHH
Confidence 999999999965459998865
No 25
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=9e-60 Score=465.58 Aligned_cols=292 Identities=23% Similarity=0.337 Sum_probs=260.7
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCCCH
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSV 138 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~ 138 (399)
-.+++||++..+++ +.|.+.+++++++++|+||+||| +|||||+++++..++||++ |+.++++|||+|+++.+..++
T Consensus 7 ~~l~~rg~~e~~~~-~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~l~~l~~~~~lq~~-g~~~~~~i~D~~a~~~d~~~~ 83 (323)
T 2cyb_A 7 LRLITRNAEEVVTE-EELRQLIETKEKPRAYVGYEPSG-EIHLGHMMTVQKLMDLQEA-GFEIIVLLADIHAYLNEKGTF 83 (323)
T ss_dssp HHHHHTTCSEEETH-HHHHHHHHSCSCCEEEEEECCCS-CCBHHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTCCCH
T ss_pred HHHHHcCChhhcCH-HHHHHHHhCCCCCEEEECcCCCC-cchHHHHHHHHHHHHHHHC-CCcEEEEECCceeEcCCCCCH
Confidence 46789999888875 67777888788999999999998 8999999999889999996 788999999999999875699
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEeccccCcc-chHHHHHHHHhhcCHHHHHHhh---CCC-CCccccccchhhhhc
Q 015880 139 EESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQA 213 (399)
Q Consensus 139 e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~-~~~~~~~~l~~~~t~~~~~~~~---g~~-~~~~~g~~~YPllQa 213 (399)
+++++++++++++|+|+|+||+++.||.||+|..+ .++..+..+++++|++++.++. ++. ++.++|+|+||+|||
T Consensus 84 ~~i~~~~~~~~~~~~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~lqa 163 (323)
T 2cyb_A 84 EEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQA 163 (323)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCSCSSSCBTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCccceEEEEcchhccchHHHHHHHHHhCccCHHHHhccchhhccccCCCCchhhhhHHHHH
Confidence 99999999999999999999999999999999864 5777788899999999999865 443 346999999999999
Q ss_pred CCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcH
Q 015880 214 VPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 293 (399)
Q Consensus 214 ad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~ 293 (399)
| |++.++++ +||+|.||+||++++||+|+|+|+++|..+++++||+|+| +||||| ++|+|||+|+|
T Consensus 164 a--------D~l~~~~~---~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~~pll~~l~G--~KMSKS-~~n~I~l~d~p 229 (323)
T 2cyb_A 164 L--------DIAHLGVD---LAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPP 229 (323)
T ss_dssp H--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCBCTTS--SBCCTT-TTCSCBTTCCH
T ss_pred H--------HHHhcCCC---EEEechhhHHHHHHHHHHHHhcCCCCceEEecCcccCCCC--CcccCC-cCceeCCCCCH
Confidence 9 68888874 8999999999999999999999999999999999999996 899999 55699999999
Q ss_pred HHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhcc----------------C--ChHHHHHHHHHHhcCCCCh
Q 015880 294 KAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL----------------E--DDAELEHIKKEYGAGGMLT 355 (399)
Q Consensus 294 ~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~----------------~--~~~eleei~~~~~~G~~~~ 355 (399)
++|++||++ |+|++. +++.|++++|+++|+ . +.+++++|+++|++|+++|
T Consensus 230 ~~i~~Ki~~-a~td~~-----------~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~~ 297 (323)
T 2cyb_A 230 EEVERKIRK-AYCPAG-----------VVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHP 297 (323)
T ss_dssp HHHHHHHHT-SCCCTT-----------CCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSCH
T ss_pred HHHHHHHHh-cCCCCC-----------CCCcChHHHHHHHHhccccCceeEechhhcCCCCCcccHHHHHHHHhcCCCCH
Confidence 999999999 999874 344577899999874 1 3468999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Q 015880 356 GEVKQRLAKVLTELVERHQVARAA 379 (399)
Q Consensus 356 ~~~K~~la~~i~~~l~~~r~~~~~ 379 (399)
+++|+.||+.|+++++|+|+++++
T Consensus 298 ~~~K~~la~~i~~~l~pir~~~~~ 321 (323)
T 2cyb_A 298 LDLKIAVAKYLNMLLEDARKRLGV 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999865
No 26
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.1e-60 Score=483.72 Aligned_cols=292 Identities=16% Similarity=0.190 Sum_probs=257.0
Q ss_pred hhhHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC--
Q 015880 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (399)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-- 135 (399)
...|++||++++|++.+.|.+.+++ +++++|+||+|||++|||||+++++.++|||++ |+.++++|||+|+++.++
T Consensus 6 ~~~L~~RG~~~~~~~~e~L~~~L~~-~~~~iy~G~dPTg~sLHLGhlv~l~~l~~lQ~~-G~~~i~lIgD~ta~igdpsk 83 (432)
T 2jan_A 6 LDELSWRGLIAQSTDLDTLAAEAQR-GPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRA-GHRPIVLAGGATGMIGDPRD 83 (432)
T ss_dssp HHHHHHHTCCSEESCHHHHHHHHHH-SCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHHCCCC
T ss_pred HHHHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCcCHHHHHHHHHHHHHHHC-CCcEEEEEcCcEEEccCCcc
Confidence 3678999999999999999888874 789999999999988999999999999999996 677788899999998754
Q ss_pred ------CCHHHHHHHHHHH---HHHHHHcCCCCCceEEEeccccCccchHHHHHH-HHhhcCHHHHHHhhCC-----CCC
Q 015880 136 ------LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF-----TGE 200 (399)
Q Consensus 136 ------~~~e~i~~~~~~~---~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~-l~~~~t~~~~~~~~g~-----~~~ 200 (399)
++.+++++|++.+ ++.|+|+|+||++++||+||+|+++..+..+++ +++++|+++|+++..+ .++
T Consensus 84 ~~~R~~~~~e~i~~n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~~~~~ 163 (432)
T 2jan_A 84 VGERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRLAGEG 163 (432)
T ss_dssp TTTSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHTSTTC
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhhcCCC
Confidence 7899999998654 677899999999999999999997776777777 9999999999987543 467
Q ss_pred ccccccchhhhhcCCCCCCCcCcccccCCCcce-eeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCC
Q 015880 201 DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMS 279 (399)
Q Consensus 201 ~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~-~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMS 279 (399)
+|+|+|+||+|||| ||+.+..+++| ++|+|.||+||++++||+|+|+|..+|..++.++||+++| +|||
T Consensus 164 is~~ef~YPlLQaa--------Dil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG--~KMS 233 (432)
T 2jan_A 164 ISYTEFSYLLLQAN--------DYVELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADG--TKFG 233 (432)
T ss_dssp CBHHHHHHHHHHHH--------HHHHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTS--CBTT
T ss_pred cchHHHHHHHHHHH--------HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCc--CcCC
Confidence 89999999999999 78888222223 5689999999999999999999998899999999999997 7999
Q ss_pred CCCCCCceeecC---cHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhcc-CChHHHHHHHHHHhcCCCCh
Q 015880 280 ASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLT 355 (399)
Q Consensus 280 KS~~nsaI~L~D---~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~ 355 (399)
||.+|++|||+| +|+++++||++ . +|.+ +++||++|+ .+.+++++|+++|.+|. ++
T Consensus 234 KS~~nsaI~L~d~~tsp~~i~qki~~-~-----------------~D~~-v~~~l~l~t~~~~~ei~~l~~~~~~g~-~~ 293 (432)
T 2jan_A 234 KSTGGGSLWLDPQMTSPYAWYQYFVN-T-----------------ADAD-VIRYLRWFTFLSADELAELEQATAQRP-QQ 293 (432)
T ss_dssp BCSSSCBCBSSTTTSCHHHHHHHHHT-C-----------------CHHH-HHHHHHHHSCCCHHHHHHHHHHHHHCG-GG
T ss_pred CCCCCCeEEccCCCCCHHHHHHHHhc-C-----------------Cchh-HHHHHHHHHcCChHHHHHHHHHHhhcc-CH
Confidence 999999999999 99999999999 2 3333 478888876 48899999999999995 99
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhh
Q 015880 356 GEVKQRLAKVLTELVERHQVARAAVT 381 (399)
Q Consensus 356 ~~~K~~la~~i~~~l~~~r~~~~~~~ 381 (399)
+++|+.||++|++++|+.++..++..
T Consensus 294 ~~~K~~LA~~v~~~~hg~~~~~~a~~ 319 (432)
T 2jan_A 294 RAAQRRLASELTVLVHGEAATAAVEH 319 (432)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99999999999999999999887765
No 27
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=2.7e-59 Score=469.78 Aligned_cols=290 Identities=20% Similarity=0.287 Sum_probs=243.0
Q ss_pred hhhHHhcCc--ccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC
Q 015880 58 PHVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135 (399)
Q Consensus 58 ~~~l~~Rgi--~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~ 135 (399)
...|++||+ ++++++++.+| ++ +++++|+||+||| +|||||++++++..|+|+. |+.++++|||+||++++.
T Consensus 10 ~~~l~~Rg~~e~~~~~~L~~~L---~~-~~~~vy~G~~PTG-~lHlG~~~~~l~~~~~~q~-g~~~i~~I~D~ha~t~~~ 83 (372)
T 1n3l_A 10 KLHLITRNLQEVLGEEKLKEIL---KE-RELKIYWGTATTG-KPHVAYFVPMSKIADFLKA-GCEVTILFADLHAYLDNM 83 (372)
T ss_dssp HHHHHHTTCSEEECHHHHHHHH---TT-SCCEEEEEECCSS-CCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTT
T ss_pred HHHHHHcCCeeecCHHHHHHHH---hc-CCCEEEeCcCCCC-cccHHHHHHHHHHHHHHHC-CCCEEEEEcCCceeeCCC
Confidence 468899997 67776666665 44 6789999999999 9999999999988888885 888999999999999765
Q ss_pred CCHHHHHHHH---HHH-HH-HHHHcCCCCCceEEEecccc-CccchHHHHHHHHhhcCHHHHHHh----hCCCCCccccc
Q 015880 136 LSVEESQRLA---REN-AK-DIIACGFDVTKTFIFSDFDY-VGGAFYKNMVKVAKCVTYNKVVGI----FGFTGEDHIGK 205 (399)
Q Consensus 136 ~~~e~i~~~~---~~~-~~-~ilA~G~dp~kt~i~~~s~~-~~~~~~~~~~~l~~~~t~~~~~~~----~g~~~~~~~g~ 205 (399)
.+.+++.++. .++ +. .++|||+||+++.||.||+| ....++.+++++++++|++++++. .++.+++++|+
T Consensus 84 ~~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~v~~~~~~~~~g~ 163 (372)
T 1n3l_A 84 KAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSG 163 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhhhhcccCCCccee
Confidence 5555554443 333 44 36899999999999999999 445677888999999999999885 35567899999
Q ss_pred cchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCC
Q 015880 206 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 285 (399)
Q Consensus 206 ~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~ns 285 (399)
|+||+|||| ||+.++++ +||+|.||++|++++||+++|+|+++|..++.++||+|+| +|||||.+|+
T Consensus 164 ~~YP~lQaa--------Dil~~~a~---~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gldG--~KMSKS~~ns 230 (372)
T 1n3l_A 164 LLYPGLQAL--------DEEYLKVD---AQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEES 230 (372)
T ss_dssp HHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCSSC--C-------CC
T ss_pred eecchHhhc--------cHHHhcCC---EEEcChhHHHHHHHHHHHHHHcCCCCCEEEecCccCCCCc--ccccCCCCCC
Confidence 999999999 78888874 7899999999999999999999999999999999999997 7999999999
Q ss_pred ceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHh--------ccC----------ChHHHHHHHHH
Q 015880 286 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF--------FLE----------DDAELEHIKKE 347 (399)
Q Consensus 286 aI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~--------f~~----------~~~eleei~~~ 347 (399)
+|||+|+|++|++||++ |||++.. ++.+.+++|+++ |+. +.+++++|+++
T Consensus 231 ~I~L~d~p~~i~kKi~~-A~td~~~-----------~~d~~v~~~lk~~l~~~~~~f~~er~~~~g~~~~~~~i~el~~~ 298 (372)
T 1n3l_A 231 KIDLLDRKEDVKKKLKK-AFCEPGN-----------VENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKD 298 (372)
T ss_dssp SCBTTCCHHHHHHHHHT-CCCCTTC-----------CSSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHHHHHHH
T ss_pred eEeccCCHHHHHHHHHH-ccCCCCC-----------CCcccHHHHHHHhhhhhhcceeecccccccCCCCHHHHHHHHHH
Confidence 99999999999999999 9999853 233456888886 431 56789999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhhHHHHHHH
Q 015880 348 YGAGGMLTGEVKQRLAKVLTELVERHQVARA 378 (399)
Q Consensus 348 ~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~ 378 (399)
|.+|+++++++|+.||++|+++|+|+|++++
T Consensus 299 ~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 299 FAAEVVHPGDLKNSVEVALNKLLDPIREKFN 329 (372)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 9999899999999999999999999999998
No 28
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=9e-59 Score=495.87 Aligned_cols=316 Identities=19% Similarity=0.250 Sum_probs=269.7
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHH-hHHhHHhhCCCeEEEEecCcccccccC--C
Q 015880 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (399)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~-~~~~lQ~~~~~~v~I~I~D~~a~~~~~--~ 136 (399)
.+++||.... .+.++|.+.+++|+++++|+||+||| +|||||+++.. .+++||++ |+.++++|||+||+++++ .
T Consensus 16 ~~~~~~~~e~-~~~~eL~~~L~~~~~~~vy~G~~PTg-~lHLG~~v~~~~~~~~lQ~~-G~~~~~lIaD~ha~~~d~~~~ 92 (690)
T 3p0j_A 16 KLLRSVGEEC-IQESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTAA-GCEFVFWVADWFALMNDKVGG 92 (690)
T ss_dssp HHHHHTCSEE-ECHHHHHHHHHHCTTEEEEEEECCCS-CCBHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGGGGCTTTT
T ss_pred HHHhhCceee-cCHHHHHHHHhcCCCceEEeeecCCC-cchhHhhHHHHHHHHHHHHC-CCcEEEEEeeeEEEecCCCcc
Confidence 4677876543 44566777778888999999999999 89999977643 47789996 888999999999999763 7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccCc-c--chHHHHHHHHhhcCHHHHHHhh---CCC-CCccccccchh
Q 015880 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-G--AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFP 209 (399)
Q Consensus 137 ~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~-~--~~~~~~~~l~~~~t~~~~~~~~---g~~-~~~~~g~~~YP 209 (399)
+.+++++++.++++.|+|+|+||+++.||.||+|.. + .+|..+.++++++|+++|+++. ++. .++++|+|+||
T Consensus 93 ~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~~~i~~g~f~YP 172 (690)
T 3p0j_A 93 ELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYP 172 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-------CCCCCSCSSHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhccCCCchhhHhhH
Confidence 889999999999999999999999999999999864 2 5788889999999999999763 433 24899999999
Q ss_pred hhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCCC-CcceeecccccCCCCCCCCCCCCCCCCcee
Q 015880 210 PVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIY 288 (399)
Q Consensus 210 llQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~-kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~ 288 (399)
+|||| ||+.++++ ++|||.||+||++++||+|+|+|+. +|.++++++||+|+++.+|||||.+||+||
T Consensus 173 lLQAa--------Dil~~~ad---~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~ 241 (690)
T 3p0j_A 173 LMQCC--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIF 241 (690)
T ss_dssp HHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCB
T ss_pred HHHHH--------HHHhhCCC---EEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeee
Confidence 99999 78889885 8999999999999999999999986 788889999999954247999999978999
Q ss_pred ecCcHHHHHHHhcccccCCCch-hhHHHhhcCCC---CcchHHHHHHHhccC------------ChHHHHHHHHHHhcCC
Q 015880 289 VTDSAKAIKNKINKYAFSGGQE-SVELHRKLGAN---LEVDIPVKYLSFFLE------------DDAELEHIKKEYGAGG 352 (399)
Q Consensus 289 L~D~~~~i~~KI~kyA~t~~~~-t~e~~~~~g~~---p~~~v~~~~l~~f~~------------~~~eleei~~~~~~G~ 352 (399)
|+|+|++|++||++ |||++.. +..++++.|++ ++.+++++|+.+|+. +++++++|+++|++|+
T Consensus 242 L~D~p~~i~kKI~~-A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~ 320 (690)
T 3p0j_A 242 MEDTEEDVARKIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFVSDE 320 (690)
T ss_dssp TTCCHHHHHHHHHT-SCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTCCEEETTEEESSHHHHHHHHHHTS
T ss_pred ccCCHHHHHHHHHh-CcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccccccccCCCcchHHHHHHHHHcCC
Confidence 99999999999999 9999654 44566677765 678899999998742 4578999999999999
Q ss_pred CChHHHHHHHHHHHHHHhhHHHHHHHHhhHH--HHHHHHh
Q 015880 353 MLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMA 390 (399)
Q Consensus 353 ~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~--~l~~~~~ 390 (399)
++|++||+.||+.|+++|+|+|++|++..++ +++++..
T Consensus 321 l~~~dlK~~lae~i~~~L~Pirer~~~~~~~~~~l~~v~~ 360 (690)
T 3p0j_A 321 VSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKS 360 (690)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 9999999999999999999999999986643 6766544
No 29
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=1.6e-58 Score=454.65 Aligned_cols=285 Identities=19% Similarity=0.252 Sum_probs=247.9
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccCCCH
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSV 138 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~ 138 (399)
-.|++||+ ..+.+.+.|.+.++ ++++++|+||+||| +|||||+++++.++|||++ |+.++++|||+||++++..++
T Consensus 4 ~~l~~r~~-~e~~~~~~l~~~L~-~~~~~vy~G~~PTg-~lHlGhl~~l~~~~~lQ~~-g~~~~~~i~D~~a~~~~~~~~ 79 (314)
T 2zp1_A 4 FEMIKRNT-SEIISEEELREVLK-KDEKSAYIGFEPSG-KIHLGHYLQIKKMIDLQNA-GFDIIILLADLAAYLNQKGEL 79 (314)
T ss_dssp HHHHHTTC-SEEETHHHHHHHHT-SSSEEEEEEECCCS-SCBHHHHHHHHHHHHHHHT-TEEEEEEECHHHHHHTTCCCH
T ss_pred HHHHHcCC-eecCCHHHHHHHHc-CCCCEEEEccCCCC-CcchhhHHHHHHHHHHHHC-CCCEEEEEecceEecCCCCCH
Confidence 35789994 44444454444555 68999999999998 8999999999999999996 788999999999999876799
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEeccccCcc-chHHHHHHHHhhcCHHHHHHhh---CCC-CCccccccchhhhhc
Q 015880 139 EESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQA 213 (399)
Q Consensus 139 e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~-~~~~~~~~l~~~~t~~~~~~~~---g~~-~~~~~g~~~YPllQa 213 (399)
+++++|+.+++++|+|||+| +.++.||+|..+ .+|..+.++++++|+++|.++. ++. +..++|+|+||+|||
T Consensus 80 e~i~~~~~~~~~~~~a~G~d---~~~~~qs~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~LQa 156 (314)
T 2zp1_A 80 DEIRKIGDYNKKVFEAMGLK---AKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQV 156 (314)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---CEEEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCC---eEEEECChhhcchHHHHHHHHHHCcCcHHHHhccchhhhhccCCCCchhhhhHHHHH
Confidence 99999999999999999998 788899999865 4688888999999999999874 332 223999999999999
Q ss_pred CCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcH
Q 015880 214 VPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 293 (399)
Q Consensus 214 ad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~ 293 (399)
| ||+.++++ ++|+|.||+||++++|++++ ++|..+++++||+|+| .+||||| ++|+|||+|+|
T Consensus 157 a--------Dil~~~~~---~v~~G~DQ~~~~~l~R~i~~----~~~~~~~~~~l~~l~G-~~KMSKS-~~~~I~L~d~~ 219 (314)
T 2zp1_A 157 N--------TSHYLGVD---VAVGGMEQRKIHMLARELLP----KKVVCIHNPVLTGLDG-EGKMSSS-KGNFIAVDDSP 219 (314)
T ss_dssp H--------HHHHHTCS---EEEEEGGGHHHHHHHHHHSS----SCCEEEEECCCBCTTS-SSBCCTT-TTCSCBTTCCH
T ss_pred H--------hHHhhCCC---EEEcChhHHHHHHHHHHhcC----CCcEEeeccccccCCc-ccccCCC-CcceecCCCCH
Confidence 9 78888874 89999999999999999987 6888999999999996 3899999 56699999999
Q ss_pred HHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhcc---------------CChHHHHHHHHHHhcCCCChHHH
Q 015880 294 KAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL---------------EDDAELEHIKKEYGAGGMLTGEV 358 (399)
Q Consensus 294 ~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~---------------~~~~eleei~~~~~~G~~~~~~~ 358 (399)
++|++||++ |||+++. ++.+++|+|+++|. .+.+++++|+++|++|+++++++
T Consensus 220 ~~i~~KI~~-a~td~~~-----------~~~~~~~~~~~~~~~~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~ 287 (314)
T 2zp1_A 220 EEIRAKIKK-AYCPAGV-----------VEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYL 287 (314)
T ss_dssp HHHHHHHHH-SCCCTTC-----------CTTCHHHHHHHHHCCSSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHh-CCCCCCC-----------CCCCcHHHHHHHHhcCCcceeehhhccCCCCcCCHHHHHHHHHcCCCCHHHH
Confidence 999999999 9999753 44678899999986 14568999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 015880 359 KQRLAKVLTELVERHQVARAA 379 (399)
Q Consensus 359 K~~la~~i~~~l~~~r~~~~~ 379 (399)
|+.||++|+++++|+|++++.
T Consensus 288 K~~la~~i~~~l~p~r~~~~~ 308 (314)
T 2zp1_A 288 KNAVAEELIKILEPIRKRLLE 308 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999874
No 30
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=1.7e-59 Score=468.21 Aligned_cols=289 Identities=16% Similarity=0.158 Sum_probs=236.6
Q ss_pred hhhHHhcCcc--cccC-----CHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCccc
Q 015880 58 PHVFLRRGVF--FAHR-----DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK 130 (399)
Q Consensus 58 ~~~l~~Rgi~--~~~~-----d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a 130 (399)
.+.|++||++ ++++ +++.+|+..++|+|+++|+||+|||++|||||+++++.++|||++ |+.++++|||+||
T Consensus 12 ~~~l~~Rg~~~~~~~~~~~~~~L~~~L~~~~~g~~~~vy~G~~PTg~sLHLGhl~~l~~~~~lQ~~-G~~~~~lIaD~ha 90 (356)
T 2pid_A 12 LAAQKARGLFKDFFPETGTKIELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRA-GHNVIALVGGATA 90 (356)
T ss_dssp HHHHHHHTSCCEEECSSCTTSCGGGGC-------CCEEEEEECCSSSSCBHHHHHHHHHHHHHHHT-TCEEEEEECTTGG
T ss_pred HHHHHHcCChheeCCccccHHHHHHHHhcCccCCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHC-CCcEEEEEcccee
Confidence 4899999999 8887 888888776677789999999999977999999999999999996 6788888999999
Q ss_pred ccccC---------CCHHHHHHHHHHHHHHHHHcCCCCCc-----------eEEEeccccCccchHHHHHH-HHhhcCHH
Q 015880 131 CMWKN---------LSVEESQRLARENAKDIIACGFDVTK-----------TFIFSDFDYVGGAFYKNMVK-VAKCVTYN 189 (399)
Q Consensus 131 ~~~~~---------~~~e~i~~~~~~~~~~ilA~G~dp~k-----------t~i~~~s~~~~~~~~~~~~~-l~~~~t~~ 189 (399)
++.++ ++.+++++|+++++++|+|+ +||++ +.|++|++|+.+..+..+++ ++++++++
T Consensus 91 l~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~ 169 (356)
T 2pid_A 91 RLGDPSGRTKEREALETERVRANARALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMG 169 (356)
T ss_dssp GTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHH
T ss_pred eecCCcccccccccCCHHHHHHHHHHHHHHHHHh-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHH
Confidence 98642 48999999999999999999 88754 89999999987654555555 89999999
Q ss_pred HHHHhhCC------CCCccccccchhhhhcCCCCCCCcCccccc----CCCcceeeccccCchhHHHHHHHHHHHhCCCC
Q 015880 190 KVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK 259 (399)
Q Consensus 190 ~~~~~~g~------~~~~~~g~~~YPllQaad~~~~~~~di~~~----~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~k 259 (399)
+|.++.++ .+++++|+|+||+|||| ||+.+ +++ ++|||.||+||++++||+|+|+|..+
T Consensus 170 ~m~~~~~~k~r~~~~~~is~g~f~YPvLQAa--------Dil~l~~~~~~~---i~p~G~DQ~~~i~l~rdla~r~n~~~ 238 (356)
T 2pid_A 170 TLLSRQSVQLRLKSPEGMSLAEFFYQVLQAY--------DFYYLFQRYGCR---VQLGGSDQLGNIMSGYEFINKLTGED 238 (356)
T ss_dssp HHHHCHHHHHHHTSTTCCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEEEGGGHHHHHHHHHHHHHHSSCC
T ss_pred HHhcchHHHHhhccCCCCchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHHHHHHHhCCCC
Confidence 99987654 34789999999999999 78888 653 67999999999999999999999988
Q ss_pred cceeecccccCCCCCCCCCCCCCCCCceeecC---cHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhcc-
Q 015880 260 PALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL- 335 (399)
Q Consensus 260 p~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D---~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~- 335 (399)
|..++.++||+|+| +|||||.+| +|||+| +|++|++||++ + +|.+ +++||++|+
T Consensus 239 ~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~~ki~~-~-----------------~D~~-v~~~l~~~t~ 296 (356)
T 2pid_A 239 VFGITVPLITSTTG--AKLGKSAGN-AVWLNRDKTSPFELYQFFVR-Q-----------------PDDS-VERYLKLFTF 296 (356)
T ss_dssp CEEEEECCCC----------------CCBSSTTTSCHHHHHHHHHT-C-----------------CHHH-HHHHHHHHCC
T ss_pred ccccccccccCCCc--ccccCCCCC-eeeccCCCCCHHHHHHHHHc-C-----------------Cchh-HHHHHHHHHc
Confidence 99999999999997 799999766 999999 99999999999 2 2333 378888876
Q ss_pred CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhH
Q 015880 336 EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 382 (399)
Q Consensus 336 ~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~ 382 (399)
.+++++++|+++|++| .+++++|+.||++|++++|+.++++++...
T Consensus 297 ~~~~~i~~l~~~~~~g-~~~~~~K~~La~~v~~~l~g~~~~~~a~~~ 342 (356)
T 2pid_A 297 LPLPEIDHIMQLHVKE-PERRGPQKRLAAEVTKLVHGREGLDSAKRC 342 (356)
T ss_dssp CCHHHHHHHHHHHHHC-GGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4889999999999998 599999999999999999999999887654
No 31
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=4.8e-59 Score=472.78 Aligned_cols=290 Identities=17% Similarity=0.223 Sum_probs=251.9
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC---
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--- 135 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~--- 135 (399)
..|.+||++++|++.+.|.+.+++ +++++|+||+|||+|||||||++++.++|||++ |+.++++|||+|+++.++
T Consensus 5 ~~L~~Rg~~~~~~~~~~L~~~L~~-~~~~iy~G~dPTg~sLHlGh~v~l~~l~~lQ~~-G~~~i~lIgd~ta~igdpsgk 82 (419)
T 2ts1_A 5 AELQWRGLVNQTTDEDGLRKLLNE-ERVTLYCGFDPTADSLHIGHLATILTMRRFQQA-GHRPIALVGGATGLIGDPSGK 82 (419)
T ss_dssp HHHHHHTCCSEESCHHHHHHHHHH-SCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHT-TCEEEEEECTTGGGTCCCTTC
T ss_pred HHHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHC-CCcEEEEEcCceeEecCCCCc
Confidence 578999999999999998888874 789999999999988999999999999999996 677788899999998643
Q ss_pred ------CCHHHHHHHHHHH---HHHHHHcCCCCCceEEEeccccCccchHHHHHH-HHhhcCHHHHHHhhCC----CCCc
Q 015880 136 ------LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF----TGED 201 (399)
Q Consensus 136 ------~~~e~i~~~~~~~---~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~-l~~~~t~~~~~~~~g~----~~~~ 201 (399)
++.+++++|+..+ +..++++|+||++++||+||+|+.+..+..+++ +++++|+++|+++.++ .+++
T Consensus 83 ~~~R~~l~~e~i~~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~r~~~~i 162 (419)
T 2ts1_A 83 KSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGI 162 (419)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTTTTTCC
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhhccCCCc
Confidence 5999999999655 556778999999999999999987777777777 9999999999887543 4689
Q ss_pred cccccchhhhhcCCCCCCCcCcccccCCCccee-eccccCchhHHHHHHHHHHHh-CCCCcceeecccccCCCCCCCCCC
Q 015880 202 HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL-IPCAIDQDPYFRMTRDVAPRI-GYHKPALIESSFFPALQGETGKMS 279 (399)
Q Consensus 202 ~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~-v~~G~DQd~~~~l~rdla~r~-~~~kp~~l~~~~lp~L~g~g~KMS 279 (399)
|+|+|+||+|||| ||+.+..+++|. +|+|.||+||++++||+|+|+ |..+|..++.++||+++| +|||
T Consensus 163 s~~ef~YPlLQaa--------Dil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG--~KMS 232 (419)
T 2ts1_A 163 SFTEFSYMMLQAY--------DFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADG--TKFG 232 (419)
T ss_dssp CHHHHHHHHHHHH--------HHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTS--CCTT
T ss_pred chHHHHHHHHHHH--------HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCc--cccc
Confidence 9999999999999 788883333344 579999999999999999999 988889999999999997 7999
Q ss_pred CCCCCCceeecC---cHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhcc-CChHHHHHHHHHHhcCCCCh
Q 015880 280 ASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLT 355 (399)
Q Consensus 280 KS~~nsaI~L~D---~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~ 355 (399)
||.+| +|||+| +|+++++||++ . +|.+ +++||++|+ .+.+++++|+++|.+|. ++
T Consensus 233 KS~~n-aI~L~d~~tsp~~i~qki~~-~-----------------~D~~-v~~~l~l~t~~~~~ei~~l~~~~~~g~-~~ 291 (419)
T 2ts1_A 233 KTESG-TIWLDKEKTSPYEFYQFWIN-T-----------------DDRD-VIRYLKYFTFLSKEEIEALEQELREAP-EK 291 (419)
T ss_dssp CCSSC-CCBSSTTTSCHHHHHHHHHT-C-----------------CHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCT-TS
T ss_pred CCCCC-eEecCCCCCCHHHHHHHHhc-C-----------------Cchh-HHHHHHHHHcCCHHHHHHHHHHHHccC-CH
Confidence 99987 999999 99999999999 2 2222 478888876 48899999999999995 99
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhh
Q 015880 356 GEVKQRLAKVLTELVERHQVARAAVT 381 (399)
Q Consensus 356 ~~~K~~la~~i~~~l~~~r~~~~~~~ 381 (399)
+++|+.||++|++++|+.++..++..
T Consensus 292 ~~~K~~LA~~v~~~~hg~~~~~~a~~ 317 (419)
T 2ts1_A 292 RAAQKTLAEEVTKLVHGEEALRQAIR 317 (419)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99999999999999999999887755
No 32
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=6.2e-58 Score=465.68 Aligned_cols=289 Identities=18% Similarity=0.292 Sum_probs=254.2
Q ss_pred hhHHhcCcccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC---
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--- 135 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~--- 135 (399)
..|++||++++|++.+.+.+.+++ +++++|+||+|||+|||||||++++.++|||++ |+.++++|||+|+++.++
T Consensus 7 ~~l~~Rg~~~~~~~~~~L~~~L~~-~~~~iy~G~dPTg~sLHlGh~v~l~~~~~lQ~~-G~~~~~lIgd~ta~igdp~gk 84 (420)
T 1jil_A 7 EDLKWRGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEH-GHRPIVLIGGGTGMIGDPSGK 84 (420)
T ss_dssp HHHHHTTCCCCBSCHHHHHHHHHH-SCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHT-TCEEEEEECTTGGGTCCCTTC
T ss_pred HHHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHC-CCcEEEEEcCceeEecCCCcc
Confidence 678999999999998887777764 789999999999988999999999999999996 677788899999998643
Q ss_pred ------CCHHHHHHHHHHHHHHHHHcCCCC---CceEEEeccccCccchHHHHHH-HHhhcCHHHHHHhhCC----CCCc
Q 015880 136 ------LSVEESQRLARENAKDIIACGFDV---TKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF----TGED 201 (399)
Q Consensus 136 ------~~~e~i~~~~~~~~~~ilA~G~dp---~kt~i~~~s~~~~~~~~~~~~~-l~~~~t~~~~~~~~g~----~~~~ 201 (399)
++.+++++|+..+.++++++ +|| ++++||+|++|+.+..+..+++ +++++|+++|+++.++ .+++
T Consensus 85 ~~~R~~l~~e~i~~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~~~~i 163 (420)
T 1jil_A 85 SEERVLQTEEQVDKNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGI 163 (420)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHHTTTC
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhccCCc
Confidence 59999999999999999988 888 9999999999986666666666 9999999999988766 4689
Q ss_pred cccccchhhhhcCCCCCCCcCcccccCCCcce-eeccccCchhHHHHHHHHHHHh-CCCCcceeecccccCCCCCCCCCC
Q 015880 202 HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRI-GYHKPALIESSFFPALQGETGKMS 279 (399)
Q Consensus 202 ~~g~~~YPllQaad~~~~~~~di~~~~~~~~~-~v~~G~DQd~~~~l~rdla~r~-~~~kp~~l~~~~lp~L~g~g~KMS 279 (399)
|+|+|+||+|||| ||+.+..+++| ++|+|.||+||++++||+|+|+ |..+|..+++++||+++| +|||
T Consensus 164 s~~ef~YplLQaa--------D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG--~KMS 233 (420)
T 1jil_A 164 SYTEFTYTILQAI--------DFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDG--KKFG 233 (420)
T ss_dssp CHHHHHHHHHHHH--------HHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTS--CBTT
T ss_pred chHHHHHHHHHHH--------HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCcc--cccc
Confidence 9999999999999 78888333345 4579999999999999999999 988899999999999997 7999
Q ss_pred CCCCCCceeecC---cHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhcc-CChHHHHHHHHHHhcCCCCh
Q 015880 280 ASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLT 355 (399)
Q Consensus 280 KS~~nsaI~L~D---~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~ 355 (399)
||.+| +|||+| +|+++++||++ . +|.+ +++||++|+ .+.+++++|+++|.+|. ++
T Consensus 234 KS~~n-aI~L~d~~tsp~~i~~ki~~-~-----------------~D~~-v~~~l~~~t~~~~~ei~~l~~~~~~g~-~~ 292 (420)
T 1jil_A 234 KSESG-AVWLDAEKTSPYEFYQFWIN-Q-----------------SDED-VIKFLKYFTFLGKEEIDRLEQSKNEAP-HL 292 (420)
T ss_dssp BCSSS-BCBSSTTTSCHHHHHHHHHT-C-----------------CHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCG-GG
T ss_pred CCCCC-eEecCCCCCCHHHHHHHHhc-C-----------------Cchh-HHHHHHHHHcCCHHHHHHHHHHHhcCC-Ch
Confidence 99988 999999 99999999999 2 2323 478888876 48899999999999996 99
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhh
Q 015880 356 GEVKQRLAKVLTELVERHQVARAAVT 381 (399)
Q Consensus 356 ~~~K~~la~~i~~~l~~~r~~~~~~~ 381 (399)
+++|+.||++|++++|+.++..++..
T Consensus 293 ~~~K~~La~~v~~~~hg~~~~~~a~~ 318 (420)
T 1jil_A 293 REAQKTLAEEVTKFIHGEDALNDAIR 318 (420)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99999999999999999999887655
No 33
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=7.3e-58 Score=466.06 Aligned_cols=290 Identities=19% Similarity=0.207 Sum_probs=238.0
Q ss_pred hhhHHhcCc--ccccCCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC
Q 015880 58 PHVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135 (399)
Q Consensus 58 ~~~l~~Rgi--~~~~~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~ 135 (399)
.+.+++||+ +++|++++.+| ++++++++|+||+|||++|||||+++++.++|||++ |+.++++|||+|++++++
T Consensus 11 ~~~li~Rg~~e~~~~~~L~~~L---~~~~~~~vy~G~dPTg~sLHlGh~v~l~~l~~lQ~~-G~~~i~lIgD~ta~igdp 86 (432)
T 1h3f_A 11 ALALLKRGAEEIVPEEELLAKL---KEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQEL-GHKVVLIIGDFTGMIGDP 86 (432)
T ss_dssp HHHHHHTTCSEEETHHHHHHHH---HTCSCCEEEEEECTTCCSCBHHHHHHHHHHHHHHHT-TCEEEEEECCCC------
T ss_pred HHHHHHcchHHhCCHHHHHHHH---hcCCCcEEEEcccCCCCCCchhhHHHHHHHHHHHHC-CCCEEEEEccceEEecCC
Confidence 478999999 56665555555 567899999999999988999999999999999996 778888999999999753
Q ss_pred ---------CCHHHHHHHHHHHHHHHHHcCCC--CCceEEEeccccCccchHHHHHHHHhhcCHHHHHHhhCC------C
Q 015880 136 ---------LSVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF------T 198 (399)
Q Consensus 136 ---------~~~e~i~~~~~~~~~~ilA~G~d--p~kt~i~~~s~~~~~~~~~~~~~l~~~~t~~~~~~~~g~------~ 198 (399)
++.+++++|+..+.+.+. +|+| |+++.||+||+|.++.+|..++++++++|+++|+++.+| .
T Consensus 87 sgk~~~R~~l~~e~i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~~ 165 (432)
T 1h3f_A 87 SGRSKTRPPLTLEETRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAG 165 (432)
T ss_dssp ---------------HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHTT
T ss_pred CCcccccccCCHHHHHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhcC
Confidence 568889988866666554 7888 999999999999988889999999999999999876544 3
Q ss_pred CCccccccchhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCC
Q 015880 199 GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKM 278 (399)
Q Consensus 199 ~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KM 278 (399)
+++|+|+|+||+|||| ||+.+++ +++|+|.||++|++++||+|+|+|..++..+++++||+|+| .+||
T Consensus 166 ~~is~~ef~YPlLQaa--------Dil~l~~---~l~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG-~~KM 233 (432)
T 1h3f_A 166 IPISLHELLYPFAQAY--------DSVAIRA---DVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDG-REKM 233 (432)
T ss_dssp CCCBGGGGTHHHHHHH--------HHHHHTC---SEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTS-SSBC
T ss_pred CCCCccccchhhHHhh--------hhhhcCc---cEEEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCC-cccc
Confidence 6799999999999999 7888886 48899999999999999999999988888899999999998 3699
Q ss_pred CCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHhcc-CChHHHHHHHHHHhcCCCChHH
Q 015880 279 SASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGE 357 (399)
Q Consensus 279 SKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~f~-~~~~eleei~~~~~~G~~~~~~ 357 (399)
|||.+| +|||+|+|+++++||++ +. .+.+++|+++|+ .+.++++++.++ ++++
T Consensus 234 SKS~~n-~I~L~dsp~~i~~Ki~~-~~------------------d~~v~~~l~~ft~~~~eei~~~~~~------~~~~ 287 (432)
T 1h3f_A 234 SKSLDN-YIGLTEPPEAMFKKLMR-VP------------------DPLLPSYFRLLTDLEEEEIEALLKA------GPVP 287 (432)
T ss_dssp CGGGTC-CCBTTSCHHHHHHHHHT-SC------------------GGGHHHHHHHHCCCCHHHHHHHHHH------CHHH
T ss_pred CcCCCC-eeCCCCCHHHHHHHHhC-CC------------------ccHHHHHHHHcCCCCHHHHHHHHhh------ChHH
Confidence 999998 99999999999999999 41 134689999986 366666666654 7999
Q ss_pred HHHHHHHHHHHHhh----HHHHHHHHhhHH-HHHHHHh
Q 015880 358 VKQRLAKVLTELVE----RHQVARAAVTDE-MVDAFMA 390 (399)
Q Consensus 358 ~K~~la~~i~~~l~----~~r~~~~~~~~~-~l~~~~~ 390 (399)
+|+.||++|++++| |+|++|+++++- +|++++.
T Consensus 288 ~K~~LA~~i~~~l~~~~~pirerr~~~~~~~~v~~il~ 325 (432)
T 1h3f_A 288 AHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFG 325 (432)
T ss_dssp HHHHHHHHHHHHHHSSSCCSCCSHHHHHHTTCCGGGTT
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHhhchHHHHHHHh
Confidence 99999999999999 999999988742 4444443
No 34
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-57 Score=460.69 Aligned_cols=302 Identities=20% Similarity=0.227 Sum_probs=243.2
Q ss_pred hhHHhcCcccccCCHHHHHHHHHh-CCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC-C
Q 015880 59 HVFLRRGVFFAHRDLNDILDAYEK-GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-L 136 (399)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~-~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-~ 136 (399)
-.|++|| +..+.+.+.|.+.+++ ++|+++|+||+||| +|||||++++++..++|++ |+.++++|+|+||++++. .
T Consensus 13 ~~l~~rg-~~e~~~~e~L~~~L~~~~~p~~vy~G~~PTG-~LHlG~~~~al~~~~~~q~-g~~~ii~I~D~ha~t~~~~~ 89 (394)
T 2dlc_X 13 FGLITKN-LQEVLNPQIIKDVLEVQKRHLKLYWGTAPTG-RPHCGYFVPMTKLADFLKA-GCEVTVLLADLHAFLDNMKA 89 (394)
T ss_dssp HHHHHTT-CSEEECHHHHHHHHHTSCSCCEEEEEECCCS-CCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTTSS
T ss_pred HHHHHcC-cceecCHHHHHHHHHccCCCeEEEEEeCCCC-CccHHHHHHHHHHHHHHHc-CCcEEEEEcCCccccCCCCC
Confidence 4678999 6666666777777774 77889999999998 9999999999888888874 888999999999999753 5
Q ss_pred CHHHHHHHHH----HHHHHHHHcCCCCCceEEEeccccCc-cchHHHHHHHHhhcCHHHHHHhh----CCCCCccccccc
Q 015880 137 SVEESQRLAR----ENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKCVTYNKVVGIF----GFTGEDHIGKVS 207 (399)
Q Consensus 137 ~~e~i~~~~~----~~~~~ilA~G~dp~kt~i~~~s~~~~-~~~~~~~~~l~~~~t~~~~~~~~----g~~~~~~~g~~~ 207 (399)
+.+.++.++. ...+.|+|||+||+++.||.||+|.. ..++.+++.+++++|++++++.- .+.+++++|+|+
T Consensus 90 ~~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~~r~~~~~~~g~~~ 169 (394)
T 2dlc_X 90 PLEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQVANPLLSGLI 169 (394)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhhhcccCCccceeee
Confidence 6666766642 33346789999999999999999974 45677888999999999998752 335678999999
Q ss_pred hhhhhcCCCCCCCcCcccccCCCcceeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCce
Q 015880 208 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 287 (399)
Q Consensus 208 YPllQaad~~~~~~~di~~~~~~~~~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI 287 (399)
||+|||| |++.++.+ ++|+|.||++|++++||+++|+|+++|..+++++||+|+| |+|||||++|++|
T Consensus 170 YP~lQaa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gl~~-G~KMSKS~~ns~I 237 (394)
T 2dlc_X 170 YPLMQAL--------DEQFLDVD---CQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQ-GGKMSASDPNSKI 237 (394)
T ss_dssp HHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCCC-----------CCSC
T ss_pred chhHhhc--------cHhhhCCC---EEecCccHHHHHHHHHHHHHHcCCCCCEEEecccccCCCC-CCcCCCCCCCCEE
Confidence 9999999 78888875 7899999999999999999999999999999999999993 4899999999889
Q ss_pred eecCcHHHHHHHhcccccCCCchhhHHHhhcCCCCcchHHHHHHHh-------------------------cc-CChHHH
Q 015880 288 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF-------------------------FL-EDDAEL 341 (399)
Q Consensus 288 ~L~D~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~v~~~~l~~-------------------------f~-~~~~el 341 (399)
||+|+|++|++||++ |+|++..+ +.+.++.|+++ ++ .+.+++
T Consensus 238 ~L~D~p~~i~kKI~k-a~Td~~~~-----------~d~~v~~y~k~~~~p~~~~~~~~g~~~~~i~~~~~~~~~~~~~~i 305 (394)
T 2dlc_X 238 DLLEEPKQVKKKINS-AFCSPGNV-----------EENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSF 305 (394)
T ss_dssp BTTCCHHHHHHHHHH-SCCCTTCC-----------SSCHHHHHHHHTHHHHHHTSSSTTCCCEEECCCGGGSCCEEESSH
T ss_pred eccCCHHHHHHHHHH-hcCCCCCC-----------CcchHHHHHHhhhcchhhhcccCCCceEEEeccccccCcCCHHHH
Confidence 999999999999999 99998543 22333455443 11 145789
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 015880 342 EHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM 389 (399)
Q Consensus 342 eei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~~~l~~~~ 389 (399)
++|+++|.+|++++++||+.||++|+++|+|+|+++++..+ +++.+
T Consensus 306 ~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~~~~~--~~~~~ 351 (394)
T 2dlc_X 306 EEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFANNKE--FQEAS 351 (394)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHH--HHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHCCHH--HHHHH
Confidence 99999999998999999999999999999999999885432 44444
No 35
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=3.6e-57 Score=456.15 Aligned_cols=292 Identities=15% Similarity=0.155 Sum_probs=242.1
Q ss_pred hhhHHhcCccccc-CCHHHHHHHHHhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCcccccccC-
Q 015880 58 PHVFLRRGVFFAH-RDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN- 135 (399)
Q Consensus 58 ~~~l~~Rgi~~~~-~d~~~ll~~~~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~- 135 (399)
...|.+||+++++ ++.+.+.+.+ +++++++|+||+|||+|||||||++++.++|||++ |+.++++|||+|+++.++
T Consensus 37 ~~~L~~Rg~~~~~~~~~e~l~~ll-~~~~~~vy~G~dPTg~sLHlGhlv~l~~l~~lQ~~-G~~~~~lIgD~haligdps 114 (392)
T 1y42_X 37 WDLFEERGYVKDTAGTKEHIAELM-RTRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLE-GYKAFTLIGGSTAKIGDPT 114 (392)
T ss_dssp HHHHHHHTCCSCEESCHHHHHHHH-HHCCCEEEEEECCCSSSCBGGGHHHHHHHHHHHHH-TCEEEEEECTTTTTTCCCC
T ss_pred HHHHHHCCcHHhhcCCHHHHHHHH-cCCCCEEEEeecCCCCCccHHHHHHHHHHHHHHHc-CCcEEEEEcCceeEeCCCC
Confidence 3678999999954 5766544444 45789999999999988999999999999999997 677888899999998753
Q ss_pred --------CCHHHHHHHHHHHHHHHHHc-----------CCC---CCceEEEeccccCccchHHHHH-HHHhhcCHHHHH
Q 015880 136 --------LSVEESQRLARENAKDIIAC-----------GFD---VTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVV 192 (399)
Q Consensus 136 --------~~~e~i~~~~~~~~~~ilA~-----------G~d---p~kt~i~~~s~~~~~~~~~~~~-~l~~~~t~~~~~ 192 (399)
++.+++++|+..+.++++|+ |+| |+++.||+|++|..+..+.+++ .+++++++++|.
T Consensus 115 gk~~~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml 194 (392)
T 1y42_X 115 GRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPML 194 (392)
T ss_dssp C-----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHh
Confidence 48888999998887777765 456 7899999999997666677777 599999999987
Q ss_pred Hh------hCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcce-eeccccCchhHHHHHHHHHHHhCC--------
Q 015880 193 GI------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRIGY-------- 257 (399)
Q Consensus 193 ~~------~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~-~v~~G~DQd~~~~l~rdla~r~~~-------- 257 (399)
++ ++..+++|+|+|+||+|||| ||+.+..+++| ++|||.||+||++++||+|+|+|.
T Consensus 195 ~~~~~k~r~~~~~~is~gef~YPlLQAa--------Dil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~ 266 (392)
T 1y42_X 195 SRDTVKNKMTQGDGVSFAEFTYPIMQGW--------DWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQER 266 (392)
T ss_dssp SSHHHHHTTSSSSCCCHHHHHHHHHHHH--------HHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred hhhHHHHHhcCCCCcccHHHHHHHHHHH--------HHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccc
Confidence 54 34456899999999999999 78877533334 458999999999999999999853
Q ss_pred ---------CCcceeecccccCCCCCCCCCCCCCCCCceeecC---cHHHHHHHhcccccCCCchhhHHHhhcCCCCcch
Q 015880 258 ---------HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVD 325 (399)
Q Consensus 258 ---------~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D---~~~~i~~KI~kyA~t~~~~t~e~~~~~g~~p~~~ 325 (399)
.+|..+++++||+|+| +|||||.+| +|||+| +|+++++||++ . ||.+
T Consensus 267 ~~~~p~l~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~qki~~-~-----------------~D~~ 325 (392)
T 1y42_X 267 KYVTPKTALDECVGFTVPLLTDSSG--AKFGKSAGN-AIWLDPYQTSVFDFYGYFVR-R-----------------SDQE 325 (392)
T ss_dssp HHHSCCSGGGSCEEEECCCCBCTTC--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-C-----------------CTTT
T ss_pred cccccccccCCccccccccCcCCch--hhccCCCCC-eeeccCCCCCHHHHHHHHHc-C-----------------Cchh
Confidence 4677888999999997 799999887 999999 99999999998 2 2334
Q ss_pred HHHHHHHhcc-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHhhH
Q 015880 326 IPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 382 (399)
Q Consensus 326 v~~~~l~~f~-~~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~~~ 382 (399)
+ ++||++|+ .+.+++++|+++|.+|. +++++|+.||++|+++||+.++++++...
T Consensus 326 v-~~~l~~ft~l~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~lhg~~~~~~a~~~ 381 (392)
T 1y42_X 326 V-ENLLKLFTFMPISEITKTMEEHIKDP-SKRVAQHTLAREVVTLVHGKQEASAAEDQ 381 (392)
T ss_dssp H-HHHHHHHCCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred H-HHHHHHHHhCChhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3 68888875 48899999999999996 99999999999999999999999887653
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=3.8e-49 Score=421.67 Aligned_cols=271 Identities=13% Similarity=0.127 Sum_probs=228.8
Q ss_pred CCceeEEEecCCCCCCccccchHHHHh--HHhHHhhCCCeEEEEecCcccccccC--CCHHHHHHHHHHHHHHHHHcCCC
Q 015880 83 GEKFYLYTGRGPSSEALHLGHLVPFMF--TKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFD 158 (399)
Q Consensus 83 ~~~~~iytG~~PTg~slHlGhlv~~~~--~~~lQ~~~~~~v~I~I~D~~a~~~~~--~~~e~i~~~~~~~~~~ilA~G~d 158 (399)
..+..++++- ||| +|||||++|+++ ..|+|.++|++++|+|||+||+++++ .+++++++++.+++++|+|+|+|
T Consensus 380 ~~~l~~~~~p-s~g-~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d 457 (690)
T 3p0j_A 380 AKPHACMWMP-ALL-KVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLP 457 (690)
T ss_dssp SSCEEEEECC-CCS-SCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCcceEEecC-CCC-CcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 4577788886 665 899999999987 45677778999999999999999986 89999999999999999999999
Q ss_pred CCceEEEeccccCcc---chHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcCcccccCCCcceee
Q 015880 159 VTKTFIFSDFDYVGG---AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI 235 (399)
Q Consensus 159 p~kt~i~~~s~~~~~---~~~~~~~~l~~~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~di~~~~~~~~~~v 235 (399)
| ++.|+.||+|... .+|.+++++++++|+++++++++ .+++++|+|.||+|||| |++.+++| ++
T Consensus 458 ~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~~-~~~~~i~~~~YPlmQaa--------Di~~l~aD---i~ 524 (690)
T 3p0j_A 458 S-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYG-GEVRNAGQVIAALMRVA--------TALMLSVS---HV 524 (690)
T ss_dssp T-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHTT-SCCSSHHHHHHHHHHHH--------HHHHTTCS---EE
T ss_pred c-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHhC-CCCcchHHHHHHHHHHh--------hhhccCCC---EE
Confidence 8 6777778888754 69999999999999999999987 67899999999999999 67888886 78
Q ss_pred ccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcHHHHHHHhcccccCCCchhhHHH
Q 015880 236 PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELH 315 (399)
Q Consensus 236 ~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i~~KI~kyA~t~~~~t~e~~ 315 (399)
|||+||++|++|+||+++|++ +|+.++++++|+|+|++.+||||+++|+|||+|+|++|++||++ |||++. +
T Consensus 525 ~gG~DQ~~~~~LaRd~~~~~~--~~~~~~~~~~P~L~gp~~~~~~~s~~~~I~l~D~~~~i~~KI~k-A~c~p~--v--- 596 (690)
T 3p0j_A 525 ISTSLDGHINAFAREYTKERI--DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPN--E--- 596 (690)
T ss_dssp EECSTTTTTTHHHHHHTTTCS--EEEECCCCSSCCSSCCCC-------CCSCBTTCCHHHHHHHHHH-SCCCTT--C---
T ss_pred ecccccHHHHHHHHHHHHhcc--CcccccccccccCCCcccccCCCCCCCeeeccCCHHHHHHHHHH-hcCCCC--C---
Confidence 999999999999999999954 68888999999999987777888888999999999999999999 999874 2
Q ss_pred hhcCCCCcchHHHHHHHh----cc-C---------ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhHHHHHHHHh
Q 015880 316 RKLGANLEVDIPVKYLSF----FL-E---------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 380 (399)
Q Consensus 316 ~~~g~~p~~~v~~~~l~~----f~-~---------~~~eleei~~~~~~G~~~~~~~K~~la~~i~~~l~~~r~~~~~~ 380 (399)
++||..+. ++|+.+ |. + +.+++++|+++|.+|+++|+++|++||+.|+++|+|+|++++-.
T Consensus 597 ---e~np~l~~-~~~~~~~~~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p~Re~~~~~ 671 (690)
T 3p0j_A 597 ---EANPVISV-AQHLLAQHGALSIERGEANGGNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNGE 671 (690)
T ss_dssp ---SCSHHHHH-HHHHHHHHSCEEECCCTTTTCCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---CCChHHHH-HHHHhccCCceEEechhhhCCCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36765433 333321 11 1 24789999999999999999999999999999999999999843
No 37
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.58 E-value=5.7e-06 Score=85.44 Aligned_cols=189 Identities=13% Similarity=0.148 Sum_probs=112.1
Q ss_pred CCCCCCccccchHHHHhHHhH-HhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 015880 93 GPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (399)
-||| .|||||+..++ .+|+ .+..|..+++-|.|.-. ..+ ...+...+..++..+|++++. -++.||+..
T Consensus 9 SPtG-~lHiG~artal-~n~l~Ar~~~G~filRieDtD~----~R~---~~~~~~~i~~dL~wLGl~wde-~~~~QS~r~ 78 (492)
T 2cfo_A 9 SPTG-NLHIGTARTAV-FNWLYARHRGGKFILRIEDTDR----ERS---RPEYTENILEGLQWLGLTWDE-GPYFQSDRL 78 (492)
T ss_dssp CTTS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCSS----SSC---CHHHHHHHHHHHHHTTCCCSE-EEEEGGGCH
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHhcCCeEEEEEeeCCc----ccc---chHHHHHHHHHHHHcCCCCCC-CCccccCCH
Confidence 4777 79999999995 5774 44567788887887642 111 134555777888899999875 367888765
Q ss_pred ccchHHHHHHH-----------------------------------HhhcCHHHHHHhh--CC--------CC--C----
Q 015880 172 GGAFYKNMVKV-----------------------------------AKCVTYNKVVGIF--GF--------TG--E---- 200 (399)
Q Consensus 172 ~~~~~~~~~~l-----------------------------------~~~~t~~~~~~~~--g~--------~~--~---- 200 (399)
. .|..-+-+| ++..+..+..... |. .. .
T Consensus 79 ~-~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~ 157 (492)
T 2cfo_A 79 D-LYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQ 157 (492)
T ss_dssp H-HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEE
T ss_pred H-HHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEE
Confidence 2 222111111 1111222111110 11 00 0
Q ss_pred -ccccccchhhhhc-CCCCCCCcCcccccCCC------cc---------------eeeccccCchhHHHHHHHHHHHhCC
Q 015880 201 -DHIGKVSFPPVQA-VPSFPSSFPHLFSGKDH------LR---------------CLIPCAIDQDPYFRMTRDVAPRIGY 257 (399)
Q Consensus 201 -~~~g~~~YPllQa-ad~~~~~~~di~~~~~~------~~---------------~~v~~G~DQd~~~~l~rdla~r~~~ 257 (399)
.-.|.+.++.-+. - |++..++| .| +.|..|.|+..+-..-+.+.+.+|.
T Consensus 158 D~v~G~~~~~~~~~~~--------D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg~ 229 (492)
T 2cfo_A 158 DLVRGRVSWQGADLGG--------DMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGA 229 (492)
T ss_dssp ETTTEEEEEEGGGGCS--------SEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTC
T ss_pred ecceeeeeecccccCC--------CeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCC
Confidence 0114444444443 3 55555544 11 3566888877766666777799999
Q ss_pred CCcceeecccccCCCCCCCCCCCCCCCCcee-ecC---cHHHHHHHhcc
Q 015880 258 HKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK 302 (399)
Q Consensus 258 ~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~-L~D---~~~~i~~KI~k 302 (399)
+.|...|.++|.+.+| +|||||.++.+|- +-+ .|+.|..-+..
T Consensus 230 ~~P~~~H~plil~~~g--~KLSKr~g~~~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 230 TPPNFAHTPLILNSTG--QKLSKRDGVTSISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp CCCEEEEECCEECSSS--SBCCTTSSCCBHHHHHHTTCCHHHHHHHHHH
T ss_pred CCceEEEeeeEECCCC--CEecccCCcccHHHHHHCCCCHHHHHHHHHH
Confidence 9998888999888886 8999999874331 111 46666655543
No 38
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.54 E-value=2.1e-07 Score=90.31 Aligned_cols=175 Identities=16% Similarity=0.189 Sum_probs=91.8
Q ss_pred CCCCCCccccchHHHHhHHhH-HhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccC
Q 015880 93 GPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 171 (399)
-||| .|||||+..++ .+|+ .+..+..+++-|.|...- | ....+...+.+++.++|++++.. ++.||+..
T Consensus 13 sPtG-~LHiG~~rtal-~n~l~Ar~~~g~~ilRieDtD~~--R-----~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~ 82 (298)
T 1nzj_A 13 SPSG-ELHFGSLIAAL-GSYLQARARQGRWLVRIEDIDPP--R-----EVPGAAETILRQLEHYGLHWDGD-VLWQSQRH 82 (298)
T ss_dssp CTTS-CCCHHHHHHHH-HHHHHHHHTTCEEEEEECCSCGG--G-----SCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCH
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHhcCCeEEEEEecCCch--h-----hHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCH
Confidence 4667 79999999995 7885 344577777778874311 1 11345557788899999999865 56777764
Q ss_pred ccchHHHHHHHH---hh----cCHHHHHHh---h-CCC-----------------------CCccccccchhh-hhcCCC
Q 015880 172 GGAFYKNMVKVA---KC----VTYNKVVGI---F-GFT-----------------------GEDHIGKVSFPP-VQAVPS 216 (399)
Q Consensus 172 ~~~~~~~~~~l~---~~----~t~~~~~~~---~-g~~-----------------------~~~~~g~~~YPl-lQaad~ 216 (399)
..|..-+-+|. .. .|..++.+. + |.- +.+-.|.+.++. .+.-
T Consensus 83 -~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~-- 159 (298)
T 1nzj_A 83 -DAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLARE-- 159 (298)
T ss_dssp -HHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHS--
T ss_pred -HHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCC--
Confidence 22222222221 11 233444431 1 100 001123333332 2223
Q ss_pred CCCCcCcccccCCCc-c---------------eeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCC
Q 015880 217 FPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSA 280 (399)
Q Consensus 217 ~~~~~~di~~~~~~~-~---------------~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSK 280 (399)
|++..++|. + +.|..|.|+..+-...+.+..-+|.+.|...|.+++.+.+| +||||
T Consensus 160 ------D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g--~KLSK 231 (298)
T 1nzj_A 160 ------DFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG--AKLSK 231 (298)
T ss_dssp ------CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC----------
T ss_pred ------CEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCC--Ccccc
Confidence 555555431 0 12334888765544445566889999998888888888876 89999
Q ss_pred CCCCCcee
Q 015880 281 SDPNSAIY 288 (399)
Q Consensus 281 S~~nsaI~ 288 (399)
+.++.+|-
T Consensus 232 R~g~~~v~ 239 (298)
T 1nzj_A 232 QNHAPALP 239 (298)
T ss_dssp -----CCC
T ss_pred cCCccChh
Confidence 98875443
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.46 E-value=3.8e-07 Score=93.70 Aligned_cols=188 Identities=11% Similarity=0.097 Sum_probs=115.0
Q ss_pred CCCCCCccccchHHHHhHHhH-HhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 015880 93 GPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------I 164 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~-------i 164 (399)
.||| .|||||+..++ .+|+ .+..|..+++-|-|.-.- | + ...+...++.++..+|++++... .
T Consensus 9 sPtG-~LHiG~~rtal-~n~l~Ar~~~G~filRieDtD~~--R--~---~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp 79 (468)
T 1j09_A 9 SPTG-DPHVGTAYIAL-FNYAWARRNGGRFIVRIEDTDRA--R--Y---VPGAEERILAALKWLGLSYDEGPDVGGPHGP 79 (468)
T ss_dssp CCSS-SCBHHHHHHHH-HHHHHHHHTTCEEEECBCCCCTT--S--C---CTTHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEeCcCCCc--c--c---ChHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Confidence 4778 79999999995 7774 445577777767765311 1 1 12344467788889999998653 4
Q ss_pred EeccccCccchHHH---HHHH--------------------------HhhcCHHHHHHhh--CC--------CC--Ccc-
Q 015880 165 FSDFDYVGGAFYKN---MVKV--------------------------AKCVTYNKVVGIF--GF--------TG--EDH- 202 (399)
Q Consensus 165 ~~~s~~~~~~~~~~---~~~l--------------------------~~~~t~~~~~~~~--g~--------~~--~~~- 202 (399)
|.||+... .|+.- +++- +|..+..+..+.. |. .. ...
T Consensus 80 ~~QS~r~~-~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~ 158 (468)
T 1j09_A 80 YRQSERLP-LYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEV 158 (468)
T ss_dssp CBGGGCHH-HHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEE
T ss_pred eeccCCHH-HHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEE
Confidence 78887653 22111 1111 2233444333321 21 00 111
Q ss_pred ----ccccchhhhhcCCCCCCCcCcccccCCCc-c---------------eeeccccCchhHHHHHHHHHHHhCCCCcce
Q 015880 203 ----IGKVSFPPVQAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPAL 262 (399)
Q Consensus 203 ----~g~~~YPllQaad~~~~~~~di~~~~~~~-~---------------~~v~~G~DQd~~~~l~rdla~r~~~~kp~~ 262 (399)
.|++.++..+.- |++.++.|. | +.|..|.|+..+-..-.-+.+.+|.+.|..
T Consensus 159 ~D~~~G~~~~~~~~~~--------D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~ 230 (468)
T 1j09_A 159 KDELRGVVVYDNQEIP--------DVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRF 230 (468)
T ss_dssp EETTTEEEEEEGGGSC--------CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEE
T ss_pred EeccceeEeecccCCC--------CeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeE
Confidence 355666665544 566655541 1 234559998888877788889999988877
Q ss_pred eecccccCCCCCCCCCCCCCCCCceeecC------cHHHHHHHhcc
Q 015880 263 IESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 302 (399)
Q Consensus 263 l~~~~lp~L~g~g~KMSKS~~nsaI~L~D------~~~~i~~KI~k 302 (399)
.|.+++.+.+| +||||+.++.+ |.+ .|+.|.+-+..
T Consensus 231 ~h~~li~~~~g--~klSKR~g~~~--l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 231 YHMPLLRNPDK--TKISKRKSHTS--LDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp EEECCCBCTTS--CBCCTTTSCCB--HHHHHHTTCCHHHHHHHHHH
T ss_pred EEeeeeeCCCC--Cccccccchhh--HHHHHHCCCCHHHHHHHHHH
Confidence 77777777775 89999998753 332 46666655543
No 40
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.32 E-value=6.3e-06 Score=85.15 Aligned_cols=188 Identities=12% Similarity=0.098 Sum_probs=110.3
Q ss_pred CCCCCCccccchHHHHhHHhH-HhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EE
Q 015880 93 GPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-------FI 164 (399)
Q Consensus 93 ~PTg~slHlGhlv~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt-------~i 164 (399)
.||| .|||||+...+ .+|+ .+..|..+++-|-|.-. ..+ ...+...++.++..+|++++.. -+
T Consensus 14 sPTG-~LHiG~~rtAL-~n~l~Ar~~gG~fiLRieDtD~----~R~---~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~ 84 (498)
T 2ja2_A 14 SPTG-TPHVGLVRTAL-FNWAYARHTGGTFVFRIEDTDA----QRD---SEESYLALLDALRWLGLDWDEGPEVGGPYGP 84 (498)
T ss_dssp CSSS-SCBHHHHHHHH-HHHHHHHHHTCEEEECBCCCCT----TTC---CHHHHHHHHHHHHHHTCCCSBBTTTBCTTCC
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCC----ccc---ChHHHHHHHHHHHHcCCCcCCCcCcCCCCCC
Confidence 5678 79999999995 6773 34445566665666421 112 2234456778888899998863 47
Q ss_pred EeccccCccchHHHHHHH----------------------------------HhhcCHHHHHHhh--CC--------CC-
Q 015880 165 FSDFDYVGGAFYKNMVKV----------------------------------AKCVTYNKVVGIF--GF--------TG- 199 (399)
Q Consensus 165 ~~~s~~~~~~~~~~~~~l----------------------------------~~~~t~~~~~~~~--g~--------~~- 199 (399)
|.||+... .|+.-+-+| +|..+..+..+.. |. .+
T Consensus 85 ~~QS~r~~-~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~ 163 (498)
T 2ja2_A 85 YRQSQRAE-IYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDD 163 (498)
T ss_dssp CBGGGCHH-HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSS
T ss_pred eeeecCHH-HHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCC
Confidence 88888652 221111111 1111222222211 11 00
Q ss_pred Cc-----cccccchhhhhcCCCCCCCcCcccccCCCc-c---------------eeeccccCchhHHHHHHHHHHHh---
Q 015880 200 ED-----HIGKVSFPPVQAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRI--- 255 (399)
Q Consensus 200 ~~-----~~g~~~YPllQaad~~~~~~~di~~~~~~~-~---------------~~v~~G~DQd~~~~l~rdla~r~--- 255 (399)
.+ -.|.+.++.-+.- |++..++|. | +.|..|.|+..+....+-+.+.+
T Consensus 164 ~~~~~D~v~G~i~~~~~~~~--------D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~~ 235 (498)
T 2ja2_A 164 DLAWNDLVRGPVTFAAGSVP--------DFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRI 235 (498)
T ss_dssp CEEEEETTTEEEEECTTCSC--------CCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHHT
T ss_pred ceEEEecccceEeecccccC--------cceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHhh
Confidence 01 1244555544433 556555441 0 23446999999888778888888
Q ss_pred --CCCCcceeecccccCCCCCCCCCCCCCCCCceeecC------cHHHHHHHhcc
Q 015880 256 --GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 302 (399)
Q Consensus 256 --~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D------~~~~i~~KI~k 302 (399)
|.+.|...|.+++.+.+| +||||+.++. .|.+ .|+.|.+-+..
T Consensus 236 g~g~~~P~~~h~plil~~~g--~KLSKR~g~~--~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 236 GVAERIPKFAHLPTVLGEGT--KKLSKRDPQS--NLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp TSCCCCCEEEEECCEECSSS--SBCCTTSGGG--BHHHHHHHTCCHHHHHHHHHT
T ss_pred cCCCCCCeEEEeeeeECCCC--CcccccCCcc--cHHHHHhCCCCHHHHHHHHHH
Confidence 999998888888888886 8999998763 2332 46666655433
No 41
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.16 E-value=1.6e-06 Score=89.37 Aligned_cols=190 Identities=13% Similarity=0.168 Sum_probs=111.7
Q ss_pred EecCCCCCCccccchHHHHhHHhH-HhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-----
Q 015880 90 TGRGPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF----- 163 (399)
Q Consensus 90 tG~~PTg~slHlGhlv~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~----- 163 (399)
..=.||| .|||||+..++ .+|+ .+..|..+++-|-|.-. ..+ +..+...+..++..+|++++...
T Consensus 30 FAPsPtG-~LHiG~~rtal-~n~l~Ar~~~G~filRieDtD~----~R~---~~~~~~~I~~dL~wlGl~wDe~~~~gG~ 100 (488)
T 3afh_A 30 FAPSPTG-HLHVGGARTAL-FNWMFARKEGGKFILRIEDTDT----ERS---SREYEQQILESLRWCGLDWDEGPDIGGD 100 (488)
T ss_dssp ECCCCSS-SCBHHHHHHHH-HHHHHHHHHTCEEEECBCCCCT----TTC---CHHHHHHHHHHHHHTTCCCSBBTTTBCT
T ss_pred ECCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEEeeCCc----ccc---cHHHHHHHHHHHHHcCCCCCcCCCCCCC
Confidence 3345677 89999999995 7774 34456677776766531 111 22344567788889999988653
Q ss_pred --EEeccccCccchHHHHH-HHHh---hc----CHHHHH-------------HhhCC--------C-CC-----cccccc
Q 015880 164 --IFSDFDYVGGAFYKNMV-KVAK---CV----TYNKVV-------------GIFGF--------T-GE-----DHIGKV 206 (399)
Q Consensus 164 --i~~~s~~~~~~~~~~~~-~l~~---~~----t~~~~~-------------~~~g~--------~-~~-----~~~g~~ 206 (399)
.|.||+.. ..|..++ ++.. .. |-.++. ...|. . .. .-.|.+
T Consensus 101 ~gp~~QSer~--~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~ 178 (488)
T 3afh_A 101 FGPYRQSERL--EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYM 178 (488)
T ss_dssp TCCCBGGGCH--HHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEE
T ss_pred CCCeeeeCCH--HHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeE
Confidence 57788765 2333322 2211 11 000000 01111 0 00 112444
Q ss_pred chhhhhcCCCCCCCcCcccccCCCc----------------ceeeccccCchhHHHHHHHHHHHhCCCCcceeecccccC
Q 015880 207 SFPPVQAVPSFPSSFPHLFSGKDHL----------------RCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPA 270 (399)
Q Consensus 207 ~YPllQaad~~~~~~~di~~~~~~~----------------~~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~ 270 (399)
.++.-+.- |++..++|. -+.|..|.|+..+--..+-+.+.+|.+.|...|.+++.+
T Consensus 179 ~~~~~~~~--------D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~ 250 (488)
T 3afh_A 179 EFDNSTLE--------DFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILG 250 (488)
T ss_dssp EEEGGGSC--------CEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEEC
T ss_pred eecCCCCC--------CeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeC
Confidence 44443332 444433321 023456999888877778888999999998888888888
Q ss_pred CCCCCCCCCCCCCCCceeecC------cHHHHHHHhcc
Q 015880 271 LQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 302 (399)
Q Consensus 271 L~g~g~KMSKS~~nsaI~L~D------~~~~i~~KI~k 302 (399)
.+| +||||+.++. .|.+ .|+.|.+-+..
T Consensus 251 ~~g--~KLSKR~g~~--~l~~~r~~G~~peal~n~l~~ 284 (488)
T 3afh_A 251 SDR--TPLSKRHGAT--SVEHFRREGILSRALMNYLAL 284 (488)
T ss_dssp TTS--SBCCTTTSCC--BHHHHHHHTCCHHHHHHHHHH
T ss_pred CCC--CcccCcCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 886 8999998873 3333 46666665544
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.07 E-value=2.5e-06 Score=89.98 Aligned_cols=194 Identities=12% Similarity=0.165 Sum_probs=114.3
Q ss_pred eeEEEecCCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-
Q 015880 86 FYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF- 163 (399)
Q Consensus 86 ~~iytG~~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~- 163 (399)
+++=..=-||| .|||||+..++ .+| +.+..|..+++-|.|.. .... +..+...+..++..+|++++...
T Consensus 130 v~~RFaPsPTG-~LHiG~artAl-~n~l~Ar~~~G~~ilRieDtD----~~r~---~~~~~~~I~~dL~wlGl~~D~~~~ 200 (592)
T 3al0_C 130 VRVRFAPSPTG-HLHVGGARTAL-FNWMFARKEGGKFILRIEDTD----TERS---SREYEQQILESLRWCGLDWDEGPD 200 (592)
T ss_dssp CEEEECCCSSS-CCBHHHHHHHH-HHHHHHHHHTCEEEECBCCCC----SSSC---CHHHHHHHHHHHHHTTCCCSBBTT
T ss_pred EEEEECCCCCC-CccHHHHHHHH-HHHHHHHhcCCcEEEEecCcC----hhhc---cHHHHHHHHHHHHHcCCCCCCCCC
Confidence 33333356788 79999999995 677 44555777777777743 1122 22344467778889999998643
Q ss_pred ------EEeccccCccchHHHHH-HHH---hhcC----HHHH-------------HHhhCC--------C-C-----Ccc
Q 015880 164 ------IFSDFDYVGGAFYKNMV-KVA---KCVT----YNKV-------------VGIFGF--------T-G-----EDH 202 (399)
Q Consensus 164 ------i~~~s~~~~~~~~~~~~-~l~---~~~t----~~~~-------------~~~~g~--------~-~-----~~~ 202 (399)
.|.||+.. ..|..++ ++. .... -.++ ....|. . . ..-
T Consensus 201 ~gG~~gp~~qSer~--~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v 278 (592)
T 3al0_C 201 IGGDFGPYRQSERL--EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLL 278 (592)
T ss_dssp TBCTTCCCBSTTCH--HHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTT
T ss_pred cCCCCCCeeeeCCH--HHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecc
Confidence 57788765 2333222 221 1110 0000 001110 0 0 011
Q ss_pred ccccchhhhhcCCCCCCCcCcccccCCCc-c---------------eeeccccCchhHHHHHHHHHHHhCCCCcceeecc
Q 015880 203 IGKVSFPPVQAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS 266 (399)
Q Consensus 203 ~g~~~YPllQaad~~~~~~~di~~~~~~~-~---------------~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~ 266 (399)
.|.+.++.-+.- |++..++|. | +.|..|.|+..+--..+-+.+.+|.+.|...|.+
T Consensus 279 ~G~~~~~~~~~~--------D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~hlp 350 (592)
T 3al0_C 279 KGYMEFDNSTLE--------DFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIP 350 (592)
T ss_dssp TCSEECCSSSSC--------CEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEEC
T ss_pred cceeeeccccCC--------CeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEee
Confidence 244444433322 444444331 0 2355799998888888888999999989888888
Q ss_pred cccCCCCCCCCCCCCCCCCceeecC------cHHHHHHHhcc
Q 015880 267 FFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 302 (399)
Q Consensus 267 ~lp~L~g~g~KMSKS~~nsaI~L~D------~~~~i~~KI~k 302 (399)
++.+.+| +||||+.++. .|.+ .|+.|.+-+..
T Consensus 351 li~~~~g--~KLSKR~g~~--~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 351 LILGSDR--TPLSKRHGAT--SVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp CCBCTTS--SBCCTTTCSS--BHHHHHHTTCCHHHHHHHHTT
T ss_pred eeeCCCC--CcccccCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 8888876 8999998873 3333 57777766644
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.80 E-value=0.00021 Score=73.52 Aligned_cols=65 Identities=14% Similarity=0.033 Sum_probs=47.4
Q ss_pred eeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecC------cHHHHHHHhcc
Q 015880 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 302 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D------~~~~i~~KI~k 302 (399)
.|..|.||..+...-.-+.+.+|.+.|...|.+++...+| +||||+.++. .|.+ .|+.|.+-+..
T Consensus 221 hvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G--~KLSKR~g~~--~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 221 HVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDG--KKLSKRHGAT--SVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCGGGSCC--BHHHHHHHTCCHHHHHHHHHT
T ss_pred eEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCC--CcccCcCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 3568999888877778888999998898778777666665 7999998874 3332 45555554433
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.57 E-value=0.0014 Score=67.47 Aligned_cols=70 Identities=16% Similarity=0.286 Sum_probs=47.6
Q ss_pred cCCCCCCccccchHHHHhHHhH-HhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccc
Q 015880 92 RGPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 170 (399)
Q Consensus 92 ~~PTg~slHlGhlv~~~~~~~l-Q~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~ 170 (399)
=-||| .|||||+..++ .+|+ .+..+..+++-|-|...- | . ...+...+..++..+|++++.. .+.||+.
T Consensus 32 PSPTG-~lHiG~~rtal-~n~l~Ar~~~G~filRieDtD~~--R-~----~~~~~~~i~~dl~wlGl~~d~~-~~~qS~r 101 (490)
T 4g6z_A 32 PSPTG-FIHLGNIRSAL-YPWAFARKMKGTFVLRIEDTDVE--R-S----SQEAVDAILEGMAWLGLDYDEG-PYYQMQR 101 (490)
T ss_dssp CCCCS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCGG--G-C----CHHHHHHHHHHHHHTTCCCSEE-EEEGGGC
T ss_pred CCCCC-CccHHHHHHHH-HHHHHHHhcCCeEEEEeCCCCcc--c-c----cHHHHHHHHHHHHHcCCCCCCC-CcccccC
Confidence 34567 79999999995 5774 455677777777664310 1 1 2345567778888999999753 6778876
Q ss_pred C
Q 015880 171 V 171 (399)
Q Consensus 171 ~ 171 (399)
.
T Consensus 102 ~ 102 (490)
T 4g6z_A 102 M 102 (490)
T ss_dssp H
T ss_pred H
Confidence 4
No 45
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=97.44 E-value=0.00023 Score=74.00 Aligned_cols=65 Identities=22% Similarity=0.354 Sum_probs=31.6
Q ss_pred ccccCchhH---HHHHHHHH-HHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecC-----cHHHHHHHhcc
Q 015880 236 PCAIDQDPY---FRMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 302 (399)
Q Consensus 236 ~~G~DQd~~---~~l~rdla-~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D-----~~~~i~~KI~k 302 (399)
.+|.|+... ......++ .-+|.+.|..+|..+|.. .|.|+|||||.+| .|.+.+ .|+.++.=+..
T Consensus 235 ~~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~-~g~g~KmSKs~Gn-~i~~~~~~~~~~pdalR~~l~~ 308 (523)
T 1irx_A 235 PAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGI-KGQKGKMSGSKGN-VILLSDLYEVLEPGLVRFIYAR 308 (523)
T ss_dssp CEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEE-SCC---------C-CCCHHHHHTTSCHHHHHHHHHS
T ss_pred CCCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEe-CCCCCCCCCcCCC-CCCHHHHHHHcCHHHHHHHHHh
Confidence 567776551 11334555 567887787777776655 3236899999998 665443 45555544433
No 46
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.28 E-value=0.00046 Score=71.86 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=50.1
Q ss_pred EEecC--CCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 015880 89 YTGRG--PSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (399)
Q Consensus 89 ytG~~--PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~ 165 (399)
.|=|. ||| .|||||+-.++ ++| +.+.++..+++-|.|.-.- |. ...+...+..++..+|++++ .++
T Consensus 98 ~tRFaPsPtG-~LHIGhaRtal-~n~l~Ar~~~G~~iLRieDtD~~--R~-----~~e~~~~I~edL~wLGl~wd--~~~ 166 (553)
T 3aii_A 98 VLRFAPNPSG-PLHIGHARAAI-LNHEYARKYDGRLILRIEDTDPR--RV-----DPEAYDMIPADLEWLGVEWD--ETV 166 (553)
T ss_dssp EEEECCCSSS-SCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCGG--GC-----CTTHHHHHHHHHHHHTCCCS--EEE
T ss_pred EEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCcc--cc-----cHHHHHHHHHHHHHcCCCCC--CCc
Confidence 34454 457 79999999995 577 4556788888878775311 11 22445567788889999996 578
Q ss_pred eccccC
Q 015880 166 SDFDYV 171 (399)
Q Consensus 166 ~~s~~~ 171 (399)
.||+.+
T Consensus 167 ~qSdr~ 172 (553)
T 3aii_A 167 IQSDRM 172 (553)
T ss_dssp EGGGGH
T ss_pred ccccCH
Confidence 888876
No 47
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.18 E-value=0.0019 Score=67.04 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=39.5
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCC
Q 015880 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 284 (399)
Q Consensus 233 ~~v~~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~n 284 (399)
+.|..|.|....--.-+-|.+-||.+.|...|.+++.+-+| +|+||.++.
T Consensus 231 THViRG~D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g--~kLSKR~~~ 280 (512)
T 4gri_A 231 THVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDG--QKLSKRHGS 280 (512)
T ss_dssp SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--SBCCTTTSC
T ss_pred ceeccccccccccHHHHHHHHHcCCCCCeEEecchhccccc--cccCccccc
Confidence 46778888666555556778889999999889988888775 899999765
No 48
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=96.81 E-value=0.005 Score=64.29 Aligned_cols=75 Identities=15% Similarity=0.276 Sum_probs=42.4
Q ss_pred CceeEEEe-cCCCCCCccccchHHHH----hHHhHHhhCCCeEEEE-ecCccccc--cc----CCCHHHH-HHHHHHHHH
Q 015880 84 EKFYLYTG-RGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ-LTDDEKCM--WK----NLSVEES-QRLARENAK 150 (399)
Q Consensus 84 ~~~~iytG-~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~-I~D~~a~~--~~----~~~~e~i-~~~~~~~~~ 150 (399)
+++++.++ --||| .+||||+...+ +.++++. .|..|... -.|.|..- .. ..+.+++ .++.....+
T Consensus 18 ~~~~v~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~-~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 95 (560)
T 3h99_A 18 KKILVTCASPYANG-SIHLGHMLEHIQADVWVRYQRM-RGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQT 95 (560)
T ss_dssp CEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCCCC-CcchhhHHHHHHHHHHHHHHHH-cCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 44555444 34447 79999988764 3334444 46665544 34444221 11 3555554 344456667
Q ss_pred HHHHcCCCCC
Q 015880 151 DIIACGFDVT 160 (399)
Q Consensus 151 ~ilA~G~dp~ 160 (399)
++.++|++.+
T Consensus 96 ~~~~lgi~~d 105 (560)
T 3h99_A 96 DFAGFNISYD 105 (560)
T ss_dssp HHHHTTCCCS
T ss_pred HHHHcCCCCC
Confidence 7778999876
No 49
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=95.97 E-value=0.025 Score=57.77 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=42.9
Q ss_pred EEEecCCCCCCccccchHHHH----hHHhHHhhCCCeEEEE--ecCcc-ccccc----CCCHHHH-HHHHHHHHHHHHHc
Q 015880 88 LYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAKDIIAC 155 (399)
Q Consensus 88 iytG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i-~~~~~~~~~~ilA~ 155 (399)
.+||--|.+ .+||||+.+.+ +.+|++. .|..|... ++|.- +...+ ..++.++ .++.....+++.++
T Consensus 29 YvcGPtvy~-~~HIGHaR~~v~~Dvl~R~lr~-~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~L 106 (462)
T 3tqo_A 29 YVCGMTVYD-YMHIGHGRSWIIFDMVVRYLRM-RGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKAL 106 (462)
T ss_dssp EECCCBTTS-CCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCcCCC-CCchhhhHHHHHHHHHHHHHHH-cCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 346777777 89999987764 3445554 45555443 44433 22221 3565554 44556777788889
Q ss_pred CCCCC
Q 015880 156 GFDVT 160 (399)
Q Consensus 156 G~dp~ 160 (399)
|+.++
T Consensus 107 gI~~d 111 (462)
T 3tqo_A 107 RVLSP 111 (462)
T ss_dssp TCCCC
T ss_pred CCCCC
Confidence 99764
No 50
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=93.51 E-value=0.025 Score=57.89 Aligned_cols=58 Identities=24% Similarity=0.362 Sum_probs=38.6
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCcce--eecccccC-CCCCCCCCCCCCCCCceeecC
Q 015880 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPAL--IESSFFPA-LQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 233 ~~v~~G~DQd~~~~l~rdla~r~~~~kp~~--l~~~~lp~-L~g~g~KMSKS~~nsaI~L~D 291 (399)
++-.+|.||..|+.-...+++.+|++.+.. ++..++.. -+|.+.|||||.+| .|++.|
T Consensus 238 ~Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn-~v~l~d 298 (464)
T 3fnr_A 238 CINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN-FILMSD 298 (464)
T ss_dssp EEEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS-SCBHHH
T ss_pred EEEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC-CCCHHH
Confidence 344799999999998888999999865432 22334422 24433699999998 888876
No 51
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=93.40 E-value=0.16 Score=52.89 Aligned_cols=84 Identities=18% Similarity=0.280 Sum_probs=54.2
Q ss_pred HHHHhCCceeEEE--ecCCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHH
Q 015880 78 DAYEKGEKFYLYT--GRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA 154 (399)
Q Consensus 78 ~~~~~~~~~~iyt--G~~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA 154 (399)
+.+++|+.-.+.| +=.||| .|||||+-.++ .+| +.+.+|..+++-|.|.-.- | . ...+...+..++..
T Consensus 17 ~dl~~~~~~~v~tRFaPSPtG-~LHIGhaRtal-~n~l~Ar~~gG~fiLRieDTD~~--R-~----~~e~~~~I~edL~w 87 (553)
T 1qtq_A 17 EDLASGKHTTVHTRFPPEPNG-YLHIGHAKSIC-LNFGIAQDYKGQCNLRFDDTNPV--K-E----DIEYVESIKNDVEW 87 (553)
T ss_dssp HHHHHTSCSSCEEEECCCTTS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCGG--G-C----CHHHHHHHHHHHHH
T ss_pred hHhhcCCcCceEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECCCCch--h-c----CHHHHHHHHHHHHH
Confidence 4455554323444 445567 79999999995 577 4455778878778775311 1 1 23445567788888
Q ss_pred cCCCCCceEEEeccccC
Q 015880 155 CGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 155 ~G~dp~kt~i~~~s~~~ 171 (399)
+|++++. .++.||+.+
T Consensus 88 LGl~wde-~~~~qSer~ 103 (553)
T 1qtq_A 88 LGFHWSG-NVRYSSDYF 103 (553)
T ss_dssp TTCCCSS-SCEEGGGGH
T ss_pred cCCCCCC-CCeehcccH
Confidence 9999843 357788775
No 52
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=91.65 E-value=0.38 Score=52.43 Aligned_cols=84 Identities=21% Similarity=0.333 Sum_probs=55.8
Q ss_pred HHHHhCCceeEEE--ecCCCCCCccccchHHHHhHHh-HHhhCCCeEEEEecCcccccccCCCHHHHHHHHHHHHHHHHH
Q 015880 78 DAYEKGEKFYLYT--GRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA 154 (399)
Q Consensus 78 ~~~~~~~~~~iyt--G~~PTg~slHlGhlv~~~~~~~-lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA 154 (399)
+.++.|+.-.+.| +=.||| .|||||+-.++ .+| +.+.+|..+++-|.|.-. ... ...+...+..++..
T Consensus 57 ~dl~~g~~~~v~tRFaPSPtG-~LHIGhARtAL-~n~l~Ar~~gG~fiLRIEDTD~----~R~---~~e~~~~IledL~w 127 (851)
T 2hz7_A 57 RDLEAGKYPRVVTRFPPDPSG-YAHLGHVFASL-LDFNTARQYGGQFNLRMDDTNP----ELA---RQEYVDSIADDLKW 127 (851)
T ss_dssp HHHHTTSCSSCEEEECCCSSS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCT----TTC---CHHHHHHHHHHHHH
T ss_pred HHhhcCCcCceEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCc----ccc---cHHHHHHHHHHHHH
Confidence 4456655333445 555667 89999999995 577 455678888887877531 111 23455577788888
Q ss_pred cCCCCCceEEEeccccC
Q 015880 155 CGFDVTKTFIFSDFDYV 171 (399)
Q Consensus 155 ~G~dp~kt~i~~~s~~~ 171 (399)
+|++++. .++.||+.+
T Consensus 128 LGl~wde-~~~~qSer~ 143 (851)
T 2hz7_A 128 LGLDWGE-HFYYASDYF 143 (851)
T ss_dssp HTCCCTT-CEEEGGGGH
T ss_pred cCCCCCC-CcccHhhhH
Confidence 9999854 367788775
No 53
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=91.25 E-value=0.37 Score=49.65 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=46.6
Q ss_pred HhCCceeEEEe-cCCCCCCccccchHHHH---hHHhHHhhCCCeEEEEecCcc---ccccc----CCCHHH-HHHHHHHH
Q 015880 81 EKGEKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE---KCMWK----NLSVEE-SQRLAREN 148 (399)
Q Consensus 81 ~~~~~~~iytG-~~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~D~~---a~~~~----~~~~e~-i~~~~~~~ 148 (399)
++.++|+|-|. -=|+| .|||||+.... ++.++++.-|..|..+-|.++ +...+ ..+..+ +.++....
T Consensus 6 ~~~k~f~Ittp~pY~nG-~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~ 84 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNA-APHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEF 84 (542)
T ss_dssp -CCCCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCC-chhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45577777766 35677 89999988864 222333444655555444444 22221 356555 44555666
Q ss_pred HHHHHHcCCCCC
Q 015880 149 AKDIIACGFDVT 160 (399)
Q Consensus 149 ~~~ilA~G~dp~ 160 (399)
.+++.++|++.+
T Consensus 85 ~~~~~~lgi~~D 96 (542)
T 3u1f_A 85 KKCFEQMDYSID 96 (542)
T ss_dssp HHHHHHHTCCCS
T ss_pred HHHHHHhCCccC
Confidence 677778888754
No 54
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=90.81 E-value=0.13 Score=52.72 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=32.9
Q ss_pred eeccccCchhH-HHHHHHHHHHhCCCCcc-eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPY-FRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~-~~l~rdla~r~~~~kp~-~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+..+|.||..+ ..+-.-....+|.+.|. .+++.++.. + |+|||||.+| .|.+.|
T Consensus 253 i~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~--G~KMSKS~GN-~i~~~d 308 (497)
T 2csx_A 253 LHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV-E--GKKMSKTLGN-VVDPYE 308 (497)
T ss_dssp CEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES-S--SSBCCTTTTC-CCCHHH
T ss_pred EEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe-C--CceeCCcCCC-CCCHHH
Confidence 55789998772 22211222345765554 445555554 4 5899999998 887654
No 55
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=90.22 E-value=0.16 Score=51.80 Aligned_cols=55 Identities=15% Similarity=-0.054 Sum_probs=33.6
Q ss_pred eeccccCchhHHH-HHHHHHHHhCCCCcc-eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFR-MTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~-l~rdla~r~~~~kp~-~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+..+|.||..+.- +-.-....+|.+.|. .+++.++..-+ |+|||||.+| .|.+.|
T Consensus 254 i~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~--G~KMSKS~GN-~i~p~d 310 (500)
T 2d5b_A 254 WHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPD--GRKMSKTLGN-VVDPFA 310 (500)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTT--SSCCCTTTTC-CCCHHH
T ss_pred EEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCC--CCcccccCCC-CCCHHH
Confidence 5678999887321 111122335765554 34566665334 5899999998 887654
No 56
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=87.87 E-value=0.19 Score=52.45 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=32.5
Q ss_pred eeccccCchhHHHHH-HHHHHHhCCCCccee-ecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~-rdla~r~~~~kp~~l-~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+..+|.||..+..+- --+..-+|.+.|..+ .+.++ ... |+|||||.+| .|++.|
T Consensus 297 v~~~GkDii~FH~~~wpa~L~a~g~~~~~~v~~hg~v-~~~--G~KMSKS~GN-vV~p~d 352 (564)
T 3kfl_A 297 VHVVGKDILKFHAIYWPAFLMSAELPLPERLVSHGWW-TKD--HKKISKSLGN-AFDPVE 352 (564)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCE-EET--TEECCTTTTC-CCCHHH
T ss_pred eEEEeecccchHHHHHHHHHHhCCCCCCcEEEEcccE-eeC--CccccccCCC-CCCHHH
Confidence 568999998843221 011122466555433 35555 445 5899999998 887654
No 57
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=87.21 E-value=0.12 Score=54.40 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=36.8
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCc--ceee--cccccCCCCCCCCCCCCCCCCceeecCcH
Q 015880 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKP--ALIE--SSFFPALQGETGKMSASDPNSAIYVTDSA 293 (399)
Q Consensus 233 ~~v~~G~DQd~~~~l~rdla~r~~~~kp--~~l~--~~~lp~L~g~g~KMSKS~~nsaI~L~D~~ 293 (399)
++-..|.||..|+.....++..+|++.+ ...| .-++. +. |+|||||.+| .|.+.|=-
T Consensus 349 ~iyV~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~-~~--g~KMSKr~Gn-~v~l~dll 409 (592)
T 1iq0_A 349 TINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LE--GRQMSGRKGL-AVSVDEVL 409 (592)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ET--TBCSCC-----CCBHHHHH
T ss_pred EEEEEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEE-cC--CCcccCCCCC-ccCHHHHH
Confidence 3336899999999999999999998542 2223 23343 33 5899999998 88876633
No 58
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=87.11 E-value=0.31 Score=50.22 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=30.1
Q ss_pred eeccccCchhHHHH---HHHHHHHhCCCCccee-ecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRM---TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l---~rdla~r~~~~kp~~l-~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||-.++.+ ++-++ .|.+.|..+ ++-++. .. |+|||||.+| .|...|
T Consensus 281 ~~~~G~D~~~fh~~~~~a~l~~--~g~~~~~~v~~hg~l~-~~--G~KMSKSlGN-vi~p~~ 336 (542)
T 3u1f_A 281 VHVIGKDILKFHAIYWPAFLLS--AGLPLPKKIVAHGWWT-KD--RKKISKSLGN-VFDPVE 336 (542)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--HTCCCCSCEEEECCCE-ET--TBCCBTTTTB-CCCHHH
T ss_pred EEEecccccccccchhHHHHHh--hcccccceecccccee-cC--CceeccccCC-CCChhH
Confidence 45789998765422 23333 355444333 344432 33 6999999998 776443
No 59
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=85.86 E-value=0.39 Score=52.38 Aligned_cols=55 Identities=25% Similarity=0.279 Sum_probs=32.0
Q ss_pred eeccccCchh-HHHHHHHHHHHh-CCCCcc-eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDP-YFRMTRDVAPRI-GYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~-~~~l~rdla~r~-~~~kp~-~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||.. |+........-+ +.+.+. .+.+.++...+| +|||||.+| .|.+.|
T Consensus 547 l~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G--~KMSKS~GN-vV~p~d 604 (821)
T 1ile_A 547 FIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKG--QKMSKSKGN-VVDPWD 604 (821)
T ss_dssp BEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTS--SCCCTTTTC-CCCHHH
T ss_pred cccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCC--CCCCccCCC-CCCHHH
Confidence 4468999863 543333332322 432222 334556665565 899999999 776543
No 60
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=85.07 E-value=0.32 Score=51.43 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=41.2
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCC-cc-eee--cccccCCCCCCCCCCCCCC--CCceeecCcHH
Q 015880 233 CLIPCAIDQDPYFRMTRDVAPRIGYHK-PA-LIE--SSFFPALQGETGKMSASDP--NSAIYVTDSAK 294 (399)
Q Consensus 233 ~~v~~G~DQd~~~~l~rdla~r~~~~k-p~-~l~--~~~lp~L~g~g~KMSKS~~--nsaI~L~D~~~ 294 (399)
++-..|.+|+.|+.-...++..+|++. +. ..| .-++. +. ++|||||.| | .|.|.|=-+
T Consensus 379 ~IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~-~~--~~KMSkr~G~~n-~v~l~dLl~ 442 (629)
T 2zue_A 379 VINVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVE-RP--EGKFSGRKGTWV-GFTVDEVIQ 442 (629)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEE-BT--TBCCCTTTTTTT-TCBHHHHHH
T ss_pred EEEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEE-cC--CCcccCCCCCCC-eeeHHHHHH
Confidence 444789999999998899999999854 22 222 23343 33 489999999 8 998876333
No 61
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=84.09 E-value=0.31 Score=50.12 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=40.5
Q ss_pred CceeEEEec-CCCCCCccccchHHHH---hHHhHHhhCCCeEEEEec-Ccccccc------cCCCHHHH-HHHHHHHHHH
Q 015880 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCMW------KNLSVEES-QRLARENAKD 151 (399)
Q Consensus 84 ~~~~iytG~-~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~-D~~a~~~------~~~~~e~i-~~~~~~~~~~ 151 (399)
+.+++.|.+ -|+| .+||||+...+ .+.++++..|..|..+.+ |.+..-. ...++.++ .++..+..++
T Consensus 12 ~~~~i~t~~P~~ng-~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 90 (524)
T 2x1l_A 12 EPFYITTAIAYPNG-VPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRL 90 (524)
T ss_dssp CEEEEEECCBCCSS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCC-CcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345555543 3467 79999988764 222333444666554322 3222110 12445443 3445566667
Q ss_pred HHHcCCCCC
Q 015880 152 IIACGFDVT 160 (399)
Q Consensus 152 ilA~G~dp~ 160 (399)
+.++|+.++
T Consensus 91 ~~~lgi~~d 99 (524)
T 2x1l_A 91 QEKLNISFD 99 (524)
T ss_dssp HHHTTCCCS
T ss_pred HHHcCCcCC
Confidence 778888765
No 62
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=83.21 E-value=0.39 Score=49.59 Aligned_cols=52 Identities=17% Similarity=0.052 Sum_probs=21.5
Q ss_pred eeccccCchhHHH---HHHHHHHHhCCCCccee-ecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFR---MTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~---l~rdla~r~~~~kp~~l-~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||..+.- .++-.+ +|.+.|..+ .+.++. +. |+|||||.+| .|++.|
T Consensus 279 v~~~G~D~~~fh~~~~~a~l~a--~g~~~~~~v~~hg~v~-~~--G~KMSKS~GN-vi~p~d 334 (536)
T 4dlp_A 279 AHIIGKDISRFHAVYWPAFLMS--AQLPLPKRVFAHGFLF-NR--GEKMSKSVGN-VIDPFE 334 (536)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCEE-C---------------CCHHH
T ss_pred eEEeechHHHHHHHHHHHHHHH--CCCCCCcEEEeeeeEe-eC--CceecccCCC-CCCHHH
Confidence 5678999988321 123223 465544333 345553 45 5899999998 887654
No 63
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=83.06 E-value=2.1 Score=45.88 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=45.8
Q ss_pred CceeEEEec-CCCCCCccccchHH-HH---hHHhHHhhCCCeEEEEec-Cccccc--c---c-CCCHHHH-HHHHHHHHH
Q 015880 84 EKFYLYTGR-GPSSEALHLGHLVP-FM---FTKYLQDAFKVPLVIQLT-DDEKCM--W---K-NLSVEES-QRLARENAK 150 (399)
Q Consensus 84 ~~~~iytG~-~PTg~slHlGhlv~-~~---~~~~lQ~~~~~~v~I~I~-D~~a~~--~---~-~~~~e~i-~~~~~~~~~ 150 (399)
++++|.+++ -|+| .+||||+.. .+ ++.++++.-|..|....| |.|..- . + ..+..++ .++.....+
T Consensus 2 ~~~~itt~~Py~nG-~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~ 80 (722)
T 1rqg_A 2 VRYMVTSALPYANG-PIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (722)
T ss_dssp CEEEEEECCCBTTS-CCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCC-chhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 467788877 5566 899999987 32 344455555666665544 333321 1 1 3565553 344556666
Q ss_pred HHHHcCCCCC
Q 015880 151 DIIACGFDVT 160 (399)
Q Consensus 151 ~ilA~G~dp~ 160 (399)
++.++|++.+
T Consensus 81 ~~~~lgis~D 90 (722)
T 1rqg_A 81 TFQRAKISFD 90 (722)
T ss_dssp HHHHHTCCCS
T ss_pred HHHHhCCCCC
Confidence 7778888765
No 64
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=82.48 E-value=0.89 Score=50.21 Aligned_cols=53 Identities=30% Similarity=0.318 Sum_probs=31.4
Q ss_pred eeccccCchh-HHH--HHHHHHHHhCCCCc-c-eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDP-YFR--MTRDVAPRIGYHKP-A-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~-~~~--l~rdla~r~~~~kp-~-~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||.. |+. +...++ -.|. .| . .+.+-++...+ |+|||||.+| .|...|
T Consensus 551 l~~~G~D~~r~wf~~~l~~s~~-~~g~-~Pfk~v~~hG~V~d~~--G~KMSKSlGN-vV~P~d 608 (917)
T 1ffy_A 551 MYLEGSDQYRGWFNSSITTSVA-TRGV-SPYKFLLSHGFVMDGE--GKKMSKSLGN-VIVPDQ 608 (917)
T ss_dssp EEEEEGGGGTTHHHHHHHHHHH-HHSS-CSBSEEEEECCEECTT--SCCCCSSSSC-CCCHHH
T ss_pred EEEEEecccccHHHHHHHHHHH-hhCC-CcccceeEeeeEEcCC--CcCcccccCC-cCChHH
Confidence 5578999873 432 234443 2343 33 2 33345665555 4899999999 776543
No 65
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=82.04 E-value=0.59 Score=46.75 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=40.4
Q ss_pred eEEEecCCCCCCccccchHHHH----hHHhHHhhCCCeEEE-EecCccc--cccc----CCCHHHH-HHHHHHHHHHHHH
Q 015880 87 YLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVI-QLTDDEK--CMWK----NLSVEES-QRLARENAKDIIA 154 (399)
Q Consensus 87 ~iytG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I-~I~D~~a--~~~~----~~~~e~i-~~~~~~~~~~ilA 154 (399)
...||-=|.| .+||||+.+.+ +.+++.. .|..|.. .-.|++. ...+ ..++.++ .++.....+++.+
T Consensus 42 ~y~~gPt~yg-~~HiGHar~~v~~DvlaR~lr~-~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~ 119 (414)
T 3c8z_A 42 MYVCGITPYD-ATHLGHAATYLTFDLVHRLWLD-AGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAA 119 (414)
T ss_dssp EEECCCCTTS-CCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCcCCC-CcCccccHHHHHHHHHHHHHHH-cCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3455555557 79999987754 3444544 4555543 3334442 2211 2455544 3344566677788
Q ss_pred cCCC-CC
Q 015880 155 CGFD-VT 160 (399)
Q Consensus 155 ~G~d-p~ 160 (399)
+|+. ++
T Consensus 120 Lgi~~~d 126 (414)
T 3c8z_A 120 LRVLPPH 126 (414)
T ss_dssp TTCCCCS
T ss_pred cCCCCCc
Confidence 9997 54
No 66
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=80.15 E-value=0.77 Score=46.65 Aligned_cols=72 Identities=24% Similarity=0.216 Sum_probs=41.3
Q ss_pred eeEE-EecCCCCCCccccchHHHH----hHHhHHhhCCCeEEEE--ecCcc-ccccc----CCCHHHHHH-HHHHHHHHH
Q 015880 86 FYLY-TGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEESQR-LARENAKDI 152 (399)
Q Consensus 86 ~~iy-tG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i~~-~~~~~~~~i 152 (399)
+.+| ||--|.+ .+||||+-+.+ +.++++.. |..|..+ ++|.- +...+ ..++.++.. +..+..+++
T Consensus 23 v~~yv~gPt~y~-~~HiGHar~~v~~D~l~R~lr~~-G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~ 100 (461)
T 1li5_A 23 VGMYVCGITVYD-LCHIGHGRTFVAFDVVARYLRFL-GYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDF 100 (461)
T ss_dssp EEEEECCCBSSS-CCBHHHHHHHHHHHHHHHHHHHH-TCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred eeEEEcCCcCCC-CCcccccHHHHHHHHHHHHHHHc-CCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4444 4433337 79999987754 34445544 5555443 56654 22221 356665444 445666777
Q ss_pred HHcCCCC
Q 015880 153 IACGFDV 159 (399)
Q Consensus 153 lA~G~dp 159 (399)
.++|+.+
T Consensus 101 ~~LgI~~ 107 (461)
T 1li5_A 101 DALNILR 107 (461)
T ss_dssp HHTTCCC
T ss_pred HHcCCCC
Confidence 8899975
No 67
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=78.97 E-value=3.5 Score=41.80 Aligned_cols=73 Identities=16% Similarity=0.035 Sum_probs=40.7
Q ss_pred eEEEecC--CCCCCccccchHHHH---hHHhHHhhCCCeEEEEec-Cccccc--c----cCCCHHH-HHHHHHHHHHHHH
Q 015880 87 YLYTGRG--PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM--W----KNLSVEE-SQRLARENAKDII 153 (399)
Q Consensus 87 ~iytG~~--PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~-D~~a~~--~----~~~~~e~-i~~~~~~~~~~il 153 (399)
++.||-- ||| .+||||+.... .+.++++..|..|....+ |.|..- . ...+..+ +.++.....+++.
T Consensus 7 ~~i~~p~py~ng-~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 85 (497)
T 2csx_A 7 FYVTTPIYYVND-VPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE 85 (497)
T ss_dssp EEEEEEEEETTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCC-ccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4445544 568 79999988764 222334444655544322 322211 0 1245544 3445566677888
Q ss_pred HcCCCCC
Q 015880 154 ACGFDVT 160 (399)
Q Consensus 154 A~G~dp~ 160 (399)
++|++++
T Consensus 86 ~lgi~~d 92 (497)
T 2csx_A 86 FLKIEYT 92 (497)
T ss_dssp HTTCCCS
T ss_pred HhCCcCC
Confidence 8999887
No 68
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=78.84 E-value=7.7 Score=42.55 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=52.2
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceeEEEec-CCCCCCccccchHHHH---hHHhHHhhCCCeEEEEec-Ccccccc-
Q 015880 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCMW- 133 (399)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~-~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~-D~~a~~~- 133 (399)
.+.+.|+|....+ ..++++++++++ -||| .|||||..... .+.++++.-|..|....| |.++.-.
T Consensus 37 ~W~~~~~f~~~~~--------~~~~~~~v~~~~PypnG-~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie 107 (880)
T 4arc_A 37 HWDEKRTFEVTED--------ESKEKYYCLSMLPYPSG-RLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAE 107 (880)
T ss_dssp HHHHTTTTCCCCC--------TTSCEEEEEECCCCCCS-SCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHH
T ss_pred HHHhcCCcccCCc--------CCCCCEEEEcCCCCCCC-CcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHH
Confidence 5566777765543 134678888886 5566 79999988864 233344444666554432 3333211
Q ss_pred -----cCCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 015880 134 -----KNLSVEE-SQRLARENAKDIIACGFDVT 160 (399)
Q Consensus 134 -----~~~~~e~-i~~~~~~~~~~ilA~G~dp~ 160 (399)
...+..+ ..++.....+++.++|+..+
T Consensus 108 ~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~D 140 (880)
T 4arc_A 108 GAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYD 140 (880)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 1244433 23344455566777887654
No 69
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=78.36 E-value=4.8 Score=41.71 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=43.0
Q ss_pred hCCceeEEEec-CCCCCCccccchHHHH----hHHhHHhhCCCeEE-EEecCcccc--cc----cCCCHHHHH-HHHHHH
Q 015880 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM----FTKYLQDAFKVPLV-IQLTDDEKC--MW----KNLSVEESQ-RLAREN 148 (399)
Q Consensus 82 ~~~~~~iytG~-~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~-I~I~D~~a~--~~----~~~~~e~i~-~~~~~~ 148 (399)
++++++|-+.. -||| .+||||+...+ +.+++... |..|. +.=.|.+.. .. ...+.+++. ++....
T Consensus 24 ~~~~~~i~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~~-G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~ 101 (564)
T 3kfl_A 24 KQKVFFATTPIYYVNA-SPHIGHVYSTLIVDVLGRYHRVK-GEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEF 101 (564)
T ss_dssp CCCCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHc-CCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34455544432 4678 79999987754 34444444 54443 333455532 11 135555543 444556
Q ss_pred HHHHHHcCCCCC
Q 015880 149 AKDIIACGFDVT 160 (399)
Q Consensus 149 ~~~ilA~G~dp~ 160 (399)
.+++.++|+..+
T Consensus 102 ~~~~~~lgi~~D 113 (564)
T 3kfl_A 102 KQCFQEMNYDMN 113 (564)
T ss_dssp HHHHHHTTCCCS
T ss_pred HHHHHHcCCCCC
Confidence 667778999876
No 70
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=78.15 E-value=4.4 Score=41.00 Aligned_cols=53 Identities=19% Similarity=0.068 Sum_probs=29.7
Q ss_pred eeccccCch-hHHHHH--HHHHHHhCCCCcc-eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQD-PYFRMT--RDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd-~~~~l~--rdla~r~~~~kp~-~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+..+|.|+. +|.... .-.| -+|.+.|. .+|+.++.. . |+|||||.+| .|.+.|
T Consensus 223 ih~gG~Dl~fpH~~~~~aq~~a-~~g~~~~~~~~h~g~v~~-~--G~KMSKS~GN-~v~~~d 279 (461)
T 1li5_A 223 IHGGGSDLMFPHHENEIAQSTC-AHDGQYVNYWMHSGMVMV-D--REKMSKSLGN-FFTVRD 279 (461)
T ss_dssp EEECBGGGTTTHHHHHHHHHHH-HSSSCCEEEECCBCCEEE-T--TBCCCGGGTC-CCBHHH
T ss_pred EEeccCccCchHHHHHHHHHHH-hcCCCCCcEEEEeeEEEE-C--CeEccccCCC-ccChhH
Confidence 346787754 343222 2122 14654443 345455543 4 5899999998 887654
No 71
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=77.50 E-value=1.3 Score=48.43 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=31.9
Q ss_pred eeccccCchhHHHHHHHHHHH---hCCCCc--ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMTRDVAPR---IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~rdla~r---~~~~kp--~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||..+. .+|-++.- +|. .| ..+.+.++...+| +|||||.+| .|...|
T Consensus 484 ~~v~G~Dii~~W-~a~~~~~~~~~~g~-~Pfk~v~~hG~vld~~G--~KMSKSlGN-vIdP~d 541 (862)
T 1gax_A 484 VLVTGYDILFLW-VSRMEVSGYHFMGE-RPFKTVLLHGLVLDEKG--QKMSKSKGN-VIDPLE 541 (862)
T ss_dssp CEEEEGGGTTTT-HHHHHHHHHHHSSS-CSBSEEEEECCEECTTS--CBCCTTTTC-CCCHHH
T ss_pred EEecCccccccH-HHHHHHHHHHhcCC-CcccEEEEeeeEEcCCC--CCccccCCC-CCCHHH
Confidence 557899986532 33434332 233 34 2334556666665 899999999 776544
No 72
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=76.79 E-value=5 Score=39.91 Aligned_cols=54 Identities=19% Similarity=0.149 Sum_probs=20.4
Q ss_pred eeccccCchh-HHHHHHHHHHHh-CCCCcc--eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDP-YFRMTRDVAPRI-GYHKPA--LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~-~~~l~rdla~r~-~~~kp~--~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+..+|.|+.. |+...+-...-+ |.+.+. .+|+-++. +. |+|||||.+| .|++.|
T Consensus 247 i~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~--G~KMSKS~GN-~v~~~~ 304 (414)
T 3c8z_A 247 IQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WD--GHKMSKSRGN-LVLVSQ 304 (414)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-----------------CBHHH
T ss_pred EEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cC--CeEcccccCC-cCCHHH
Confidence 4468888765 544433333333 553332 23434443 35 4899999998 887654
No 73
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=76.40 E-value=6.1 Score=40.54 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=41.4
Q ss_pred CceeEEEecCC--CCCCccccchHHHHh---HHhHHhhCCCeEEEE-ecCcccc--ccc----CCCHHHHH-HHHHHHHH
Q 015880 84 EKFYLYTGRGP--SSEALHLGHLVPFMF---TKYLQDAFKVPLVIQ-LTDDEKC--MWK----NLSVEESQ-RLARENAK 150 (399)
Q Consensus 84 ~~~~iytG~~P--Tg~slHlGhlv~~~~---~~~lQ~~~~~~v~I~-I~D~~a~--~~~----~~~~e~i~-~~~~~~~~ 150 (399)
+++++ ||--| || .+||||+.+.+. +.++.+..|..|... =.|++.. ..+ ..+.+++. ++.....+
T Consensus 25 ~~~~i-~~p~pypng-~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~ 102 (536)
T 4dlp_A 25 EKYYI-TTAIAYPNG-KPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRR 102 (536)
T ss_dssp CEEEE-EECCBCCSS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCEEE-eCCCCCCCC-CcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34444 55444 47 799999877642 233334446655443 3455422 111 25555543 34456666
Q ss_pred HHHHcCCCCC
Q 015880 151 DIIACGFDVT 160 (399)
Q Consensus 151 ~ilA~G~dp~ 160 (399)
++.++|+..+
T Consensus 103 ~l~~lgi~~d 112 (536)
T 4dlp_A 103 MAEVLNSSND 112 (536)
T ss_dssp HHHHTTCCCS
T ss_pred HHHHcCCCCC
Confidence 7778999876
No 74
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=75.74 E-value=4.9 Score=40.71 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=40.2
Q ss_pred eEEEecCC--CCCCccccchHHHH---hHHhHHhhCCCeEEEEec-Cccccc--c----cCCCHHHH-HHHHHHHHHHHH
Q 015880 87 YLYTGRGP--SSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM--W----KNLSVEES-QRLARENAKDII 153 (399)
Q Consensus 87 ~iytG~~P--Tg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~-D~~a~~--~----~~~~~e~i-~~~~~~~~~~il 153 (399)
++.||--| +| .+||||+...+ .+.++++..|..|....+ |.+..- . ...+..++ .++.....+++.
T Consensus 5 ~~i~~p~py~~g-~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 5 FYVTTPIYYVNA-EPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEECCCEETTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCC-CcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45555555 67 79999988764 222333444666555332 322210 0 12445443 334456667778
Q ss_pred HcCCCCC
Q 015880 154 ACGFDVT 160 (399)
Q Consensus 154 A~G~dp~ 160 (399)
++|++++
T Consensus 84 ~lgi~~d 90 (500)
T 2d5b_A 84 LLGIAYD 90 (500)
T ss_dssp HTTCCCS
T ss_pred HhCCcCC
Confidence 8999876
No 75
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=74.94 E-value=7.6 Score=39.83 Aligned_cols=70 Identities=19% Similarity=0.170 Sum_probs=39.4
Q ss_pred EecCCCCCCccccchHHHH----hHHhHHhhCCCeEEEE--ecCc-----------cccccc----CCCHHH-HHHHHHH
Q 015880 90 TGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDD-----------EKCMWK----NLSVEE-SQRLARE 147 (399)
Q Consensus 90 tG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~--I~D~-----------~a~~~~----~~~~e~-i~~~~~~ 147 (399)
||-=|.+ .+||||+.+.+ +.+|++-. |..|... |+|. .+...+ ..++.+ +.++...
T Consensus 48 cgPTvYg-~~HIGHar~~v~~Dvl~R~lr~~-Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~~ 125 (501)
T 3sp1_A 48 CGPTVYN-YAHIGNFRTYIFGDLLIKTLRFL-GYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEA 125 (501)
T ss_dssp CCCBCSS-CCCHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHHH
T ss_pred CCCcCCC-CcchhhhHHHHHHHHHHHHHHHc-CCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5544446 89999987754 34455543 5554443 5554 133322 256555 4455667
Q ss_pred HHHHHHHcCCCCCc
Q 015880 148 NAKDIIACGFDVTK 161 (399)
Q Consensus 148 ~~~~ilA~G~dp~k 161 (399)
..+++.++|+.++.
T Consensus 126 f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 126 FFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHTTCCCCS
T ss_pred HHHHHHHcCCCCCC
Confidence 77788889997654
No 76
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=73.54 E-value=2.3 Score=47.15 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=29.0
Q ss_pred eeccccCchh-HHHHHHHHHHH-hCC-CCc-ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~-~~~l~rdla~r-~~~-~kp-~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+...|.||-. |+...+-...- ++. +-| ..+++-++.. + |+|||||.+| .|.+.+
T Consensus 606 i~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~--G~KMSKS~GN-vv~p~d 663 (967)
T 1wz2_A 606 WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-E--GQKMSKSKGN-VLNFID 663 (967)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-S--SSCCCTTTCC-CCBHHH
T ss_pred EEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-C--CEEccccccC-CCCHHH
Confidence 4578999854 32222211111 221 112 3344545543 4 5899999999 777544
No 77
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=71.36 E-value=2 Score=46.58 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=29.2
Q ss_pred eeccccCchh-HHHHHHHHHHH-hCC-CCc-ceeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~-~~~l~rdla~r-~~~-~kp-~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+..+|.||-. |....+-...- ++. +-| ..+++-++.. + |+|||||.+| .|.+.|
T Consensus 606 i~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~--G~KMSKS~GN-vv~p~d 663 (810)
T 1wkb_A 606 WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-E--GQKMSKSKGN-VLNFID 663 (810)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-T--TBCCCTTTTC-CCBHHH
T ss_pred EEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-C--CeehhhcCCC-cCCHHH
Confidence 4568999864 32222222111 221 112 2344445443 4 5899999999 887654
No 78
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=70.51 E-value=10 Score=38.65 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=31.5
Q ss_pred eeccccCchhHHHHH-HHHHHHhCCCCcc-eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 234 ~v~~G~DQd~~~~l~-rdla~r~~~~kp~-~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
+..+|.||-.+.-+- .-.+..+|.+.|. .+.+-++.. + |+|||||.+| .|.+.|
T Consensus 268 i~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~--G~KMSKS~GN-~v~p~d 323 (524)
T 2x1l_A 268 LHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN-R--GEKMSKSIGN-VVDPVN 323 (524)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE-C--SCSEETTTEE-SSCHHH
T ss_pred EEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe-C--CcccCCcCCC-CCCHHH
Confidence 567899987532221 1222335665442 333444443 4 5899999998 887654
No 79
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=70.44 E-value=1.9 Score=45.44 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=41.9
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCCCcc-eeecccccCCCCCCCCCCCCCCCCceeecCcHHHH
Q 015880 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 296 (399)
Q Consensus 233 ~~v~~G~DQd~~~~l~rdla~r~~~~kp~-~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~~~i 296 (399)
++-.+|.+|+.|+.-...+++.+|++.+. ..|..+ |+- .||||+.|| .|.|.|=-+++
T Consensus 367 ~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~f--g~v---~kMSkR~G~-~v~L~dLlde~ 425 (607)
T 1f7u_A 367 MIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNF--GMV---QGMSTRKGT-VVFLDNILEET 425 (607)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECC--CCE---ESCCGGGTC-CCBHHHHHHHH
T ss_pred EEEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEecc--ccc---ccccCCCCC-cccHHHHHHHH
Confidence 34479999999999989999999986553 334444 222 379999998 99887744444
No 80
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=62.79 E-value=10 Score=41.54 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=37.0
Q ss_pred hHHhcCcccccCCHHHHHHHHHhCCceeEEEec-CCCCCCccccchHHHH---hHHhHHhhCCCeEEEEecCcc
Q 015880 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (399)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~iytG~-~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I~D~~ 129 (399)
.+.+ |+|....+ ..++++++++|. -||| .||+||++... ++.++++.-|..+....|=++
T Consensus 19 ~W~~-~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~ 82 (862)
T 1gax_A 19 KWAK-NPFVANPK--------SGKPPFVIFMPPPNVTG-SLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82 (862)
T ss_dssp HHHH-SCCCCCTT--------CCSCEEEEECCCCBSSS-CCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBC
T ss_pred HHHh-CCCccCcC--------CCCCcEEEEcCCCCCCC-CcchhhhHHHHHHHHHHHHHHhCCCccccccccCC
Confidence 5566 77765432 234678888874 4567 89999988753 333355555666666554443
No 81
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=59.59 E-value=2.7 Score=46.09 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=12.1
Q ss_pred CCCCCCCCCCceeecC
Q 015880 276 GKMSASDPNSAIYVTD 291 (399)
Q Consensus 276 ~KMSKS~~nsaI~L~D 291 (399)
+|||||.+| .|...|
T Consensus 636 ~KMSKSkGN-vVdP~d 650 (878)
T 2v0c_A 636 AVMSKSKGN-GVMVGP 650 (878)
T ss_dssp EECSGGGTC-CCBHHH
T ss_pred HHhhccCCC-cccHHH
Confidence 799999999 776543
No 82
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=59.18 E-value=3.3 Score=44.37 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=29.8
Q ss_pred eccccCchhHHHHH--HHHHHHhC----------CCCcc-eeecccccCCCCCCCCCCCCCCCCceeecC
Q 015880 235 IPCAIDQDPYFRMT--RDVAPRIG----------YHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (399)
Q Consensus 235 v~~G~DQd~~~~l~--rdla~r~~----------~~kp~-~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D 291 (399)
-.+|.|...++.+- ..+ .-.+ .+.|. .+++-++.. + |+|||||.+| .|+..+
T Consensus 293 h~~GkDii~fH~~~wpA~l-~~~~~~l~~d~~rg~~~Pk~v~~hG~v~~-~--G~KMSKS~GN-vV~p~d 357 (722)
T 1rqg_A 293 HFIGKDNIPFHAIFWPAFL-MAYGKYKDEEVEAEWNLPYDIPANEYLTL-E--GKKFSTSRNW-AIWVHE 357 (722)
T ss_dssp EEEEGGGHHHHHTHHHHHH-HTTCCBCSSSCCBCBCCCSBCCEECCEEE-T--TEECBTTTTB-SCBHHH
T ss_pred EEccccccccchhhhHHHH-hccCCCcccccccCCCCCCEEEEeeeEEe-C--CeeeeeeCCC-cCCHHH
Confidence 35688876654322 222 1122 34453 334555554 5 4899999998 888654
No 83
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=57.21 E-value=1.3e+02 Score=28.26 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=31.4
Q ss_pred cccCchhHHHHHHHHHHHhCCCCcceeecccccCCCCCCCCCCCCCCCCceeecCcH
Q 015880 237 CAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 293 (399)
Q Consensus 237 ~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~D~~ 293 (399)
+=.| .|-+.+.+.+++.+|++ ...+-.+.+..-+ |..||++ .+||++..
T Consensus 147 G~kd-~qq~~~l~~~~~dl~~~-v~iv~vp~vr~~d--GlaiSSr----n~yLs~~e 195 (280)
T 2ejc_A 147 GQKD-AQQFRVLRRMVRDLNMD-VEMIECPIVREPD--GLAMSSR----NVYLSPEE 195 (280)
T ss_dssp EGGG-HHHHHHHHHHHHHTTCC-CEEEEECCCBCTT--SCBCCGG----GGGCCHHH
T ss_pred CCCC-CcCHHHHHHHHHHcCCe-EEEEeeCcEEcCC--CCEeccC----cccCCHHH
Confidence 3334 67777889999999974 1212244443334 4799988 78887744
No 84
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=52.97 E-value=4.2 Score=41.73 Aligned_cols=52 Identities=19% Similarity=0.145 Sum_probs=18.3
Q ss_pred eccccCc-hhHHHHHHHHHHHh-CCC-CcceeecccccCCCCCCCCCCCCCCCCceeec
Q 015880 235 IPCAIDQ-DPYFRMTRDVAPRI-GYH-KPALIESSFFPALQGETGKMSASDPNSAIYVT 290 (399)
Q Consensus 235 v~~G~DQ-d~~~~l~rdla~r~-~~~-kp~~l~~~~lp~L~g~g~KMSKS~~nsaI~L~ 290 (399)
-.+|.|. .||++.-+-...-+ +.+ ....+|+-++. +. |+|||||.+| .|.+.
T Consensus 257 H~gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~-~~--G~KMSKSlGN-~it~~ 311 (501)
T 3sp1_A 257 HLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLI-MD--YNKMSKSRGN-FITVK 311 (501)
T ss_dssp EEEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEE-CC-------------CCCHH
T ss_pred EeeccccccchHHHHHHHHHHccCCCCCeEEEEeeeEe-eC--CeEccccCCC-cCCHH
Confidence 3567774 33443332222222 322 11344555554 45 4899999999 66654
No 85
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=51.84 E-value=24 Score=38.66 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=48.3
Q ss_pred hHHhcCcccccC-CHHHHHHHHHhCCceeEEEec-CCCCCCccccchHHHH----hHHhHHhhCCCeEEEEec-Cccccc
Q 015880 60 VFLRRGVFFAHR-DLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLT-DDEKCM 132 (399)
Q Consensus 60 ~l~~Rgi~~~~~-d~~~ll~~~~~~~~~~iytG~-~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~I~-D~~a~~ 132 (399)
.+.+.++|.... + ..++++++++|+ -|+| .+||||..... +.+| ++.-|..|....| |.|+.-
T Consensus 16 ~W~~~~~f~~~~~~--------~~~~k~~v~~~~Py~nG-~lHiGHa~~~~~~Dvl~Ry-~rm~G~~V~~~~G~D~~Glp 85 (878)
T 2v0c_A 16 FWEEKGFMKAKDLP--------GGRGKQYVLVMFPYPSG-DLHMGHLKNYTMGDVLARF-RRMQGYEVLHPMGWDAFGLP 85 (878)
T ss_dssp HHHHHTTTCCCSCC--------C---EEEEEECCCCCSS-CCBHHHHHHHHHHHHHHHH-HHHHTCEEECCCCBCCSSHH
T ss_pred HHHHcCCcccCccc--------CCCCCEEEECCCCCCCC-CcchhhhHHHHHHHHHHHH-HHhcCCceEeecccCcccHH
Confidence 445566665543 2 123468888884 3346 79999988754 3334 3333555554433 333221
Q ss_pred c------cCCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 015880 133 W------KNLSVEE-SQRLARENAKDIIACGFDVT 160 (399)
Q Consensus 133 ~------~~~~~e~-i~~~~~~~~~~ilA~G~dp~ 160 (399)
. ...+..+ +.++.....+++.++|+..+
T Consensus 86 ie~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi~~D 120 (878)
T 2v0c_A 86 AENAALKFGVHPKDWTYANIRQAKESLRLMGILYD 120 (878)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccC
Confidence 0 1244433 34445556667778887654
No 86
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=49.36 E-value=7.4 Score=42.24 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=29.4
Q ss_pred hCCceeEEEec-CCCCCCccccchHHHH---hHHhHHhhCCCeEEEEe-cCccc
Q 015880 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEK 130 (399)
Q Consensus 82 ~~~~~~iytG~-~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~I~I-~D~~a 130 (399)
.+++++++.|. -||| .||+||+.... ++.++++.-|..|.... .|.|+
T Consensus 36 ~~~~f~i~~~pPy~nG-~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~G 88 (821)
T 1ile_A 36 GGPRYTVYEGPPTANG-LPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHG 88 (821)
T ss_dssp TSCBCCBCCCCCCTTS-CCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCH
T ss_pred CCCcEEEecCCCCCCC-CCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCC
Confidence 44678888887 6777 79999988753 22334444454444333 34443
No 87
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=48.11 E-value=4.2 Score=41.18 Aligned_cols=23 Identities=9% Similarity=-0.071 Sum_probs=11.2
Q ss_pred cccccCC--CcceeeccccCchhHH
Q 015880 223 HLFSGKD--HLRCLIPCAIDQDPYF 245 (399)
Q Consensus 223 di~~~~~--~~~~~v~~G~DQd~~~ 245 (399)
||+.+.. -.+|+||+|+|||||.
T Consensus 223 Dil~~~~d~~~~~~vp~~~d~~~~~ 247 (451)
T 3foc_A 223 PVYSTYFDGLPFTRVPLPVGTGNED 247 (451)
T ss_dssp GGSGGGGTTSGGGCCBCC-------
T ss_pred HHHHhhcCCCCccccccccccccch
Confidence 6664433 3579999999999994
No 88
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=47.72 E-value=8.4 Score=42.28 Aligned_cols=14 Identities=43% Similarity=0.285 Sum_probs=11.1
Q ss_pred CCCCCCCCCceeecC
Q 015880 277 KMSASDPNSAIYVTD 291 (399)
Q Consensus 277 KMSKS~~nsaI~L~D 291 (399)
|||||.+| .|...|
T Consensus 639 KMSKSkGN-vVdP~d 652 (880)
T 4arc_A 639 KMSKSKNN-GIDPQV 652 (880)
T ss_dssp ECCTTTTC-CCCHHH
T ss_pred cccCcCCC-CCCHHH
Confidence 99999999 775443
No 89
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=44.18 E-value=13 Score=38.74 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=27.0
Q ss_pred eeEEEecCCCCCCccccchHHHH----hHHhHHhhCCCeEEEE--ecCc
Q 015880 86 FYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDD 128 (399)
Q Consensus 86 ~~iytG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~--I~D~ 128 (399)
+.=|+|--|++ .|||||+-..+ +.+++. ..|..|... |+|+
T Consensus 106 ~ve~~spn~~~-~~HiGH~R~~iigD~laR~l~-~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNK-ELHVGHLRNIALGDAIARILA-YAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTS-CCBHHHHHHHHHHHHHHHHHH-HTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCC-CCcchHHHHHHHHHHHHHHHH-HcCCceEEEeccCCc
Confidence 34477888887 79999988764 333444 446655543 7887
No 90
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=43.59 E-value=18 Score=37.94 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=25.9
Q ss_pred EEecCCCCCCccccchHHHH----hHHhHHhhCCCeEEEE--ecCc
Q 015880 89 YTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDD 128 (399)
Q Consensus 89 ytG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~--I~D~ 128 (399)
|+|--|++ .|||||+-+.+ +.++|.- .|..|+-. |+||
T Consensus 149 ~~spN~~~-plHvGHlRs~iiGD~laRil~~-~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 149 FSSPNIAK-PFHAGHLRSTIIGGFLANLYEK-LGWEVIRMNYLGDW 192 (607)
T ss_dssp CCCCBTTS-CCBGGGHHHHHHHHHHHHHHHH-TTCEEEEEEEEBCC
T ss_pred ecCCCCCC-CCccchHHHHHHHHHHHHHHHH-cCCCeeEEEeecCc
Confidence 67888888 79999988764 3444544 46555443 7884
No 91
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=39.56 E-value=19 Score=37.87 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=28.1
Q ss_pred ceeE-EEecCCCCCCccccchHHHH----hHHhHHhhCCCeEEEE--ecCc
Q 015880 85 KFYL-YTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDD 128 (399)
Q Consensus 85 ~~~i-ytG~~PTg~slHlGhlv~~~----~~~~lQ~~~~~~v~I~--I~D~ 128 (399)
++.| |+|--|++ .|||||+-..+ +.++|.- .|..|... |+|+
T Consensus 120 ~V~ve~~spN~~~-~~HiGH~Rs~iigD~laR~l~~-~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 120 KVIVEHTSVNPTK-PLHMGHARNAILGDVMARILRF-LGYEVEVQNYIDDL 168 (629)
T ss_dssp EEEEECCCCCTTS-CCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEEEECTT
T ss_pred EEEEEeeCCCCCC-CCccchhHHHHHHHHHHHHHHH-cCCCceEEecccch
Confidence 3433 78888887 79999987764 3344544 46666553 7887
No 92
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=38.10 E-value=2.4e+02 Score=26.14 Aligned_cols=93 Identities=15% Similarity=0.196 Sum_probs=59.1
Q ss_pred HhCCceeEEEecCCCCCCccccchHHHHhHHhHHhhCCCeEEEEecCccc-ccc--cCCCHHHHHHHHH--------HHH
Q 015880 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK-CMW--KNLSVEESQRLAR--------ENA 149 (399)
Q Consensus 81 ~~~~~~~iytG~~PTg~slHlGhlv~~~~~~~lQ~~~~~~v~I~I~D~~a-~~~--~~~~~e~i~~~~~--------~~~ 149 (399)
++|+ .++.|+-|-. +-|=+-++-- ++.|.+..|+ .+.|+++|-+. .+- ...+..+.++.++ .+.
T Consensus 27 ~~g~--HallGISpgN-syFs~d~L~~-Li~Wa~~~F~-~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ 101 (257)
T 3oqi_A 27 KRRR--HVLVGISPFN-SRFSEDYIHR-LIAWAVREFQ-SVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAE 101 (257)
T ss_dssp HHTC--EEEEEECTTS-TTCCHHHHHH-HHHHHHHHCS-EEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC--eEEEEeCCCC-cccCHHHHHH-HHHHHHccCC-ceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 4555 5889999986 7888888877 5899988765 56667899763 222 2355555444332 233
Q ss_pred HHHHHcCCCCCceEEEeccccCccchHHHHH
Q 015880 150 KDIIACGFDVTKTFIFSDFDYVGGAFYKNMV 180 (399)
Q Consensus 150 ~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~ 180 (399)
..+.++|.+++ -|..=|++..+..|..+.
T Consensus 102 ral~~~g~~~~--~v~~~Sd~~~~~~Y~~l~ 130 (257)
T 3oqi_A 102 KALEAHGGNPE--DIHTFSDFANQTAYRNLR 130 (257)
T ss_dssp HHHHHHTCCTT--CEEETTTTTTCHHHHHHH
T ss_pred HHHHHcCCCcc--cceeHHHhhcCHHHHHHH
Confidence 34446788776 355446666666666544
No 93
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=34.06 E-value=17 Score=40.01 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=25.4
Q ss_pred hCCceeEEEec-CCCCCCccccchHHHH---hHHhHHhhCCCeEE
Q 015880 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLV 122 (399)
Q Consensus 82 ~~~~~~iytG~-~PTg~slHlGhlv~~~---~~~~lQ~~~~~~v~ 122 (399)
.+++|++.+|. -||| .|||||.+... ++.++++.-|..+.
T Consensus 46 ~~~~f~i~~~pPY~nG-~lHiGHa~n~~~~Dii~Ry~rm~G~~v~ 89 (917)
T 1ffy_A 46 GNETFILHDGPPYANG-NLHMGHALNKILKDFIVRYKTMQGFYAP 89 (917)
T ss_dssp TSCBCCEECCCCBSSS-CCCHHHHHHHHHHHHHHHHHHTTTCBCC
T ss_pred CCCceeeCCCCCCCCC-cchHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 34578888887 4577 79999988753 23334444344443
No 94
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=32.60 E-value=35 Score=34.43 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=28.8
Q ss_pred CCce-eEEEecCCCCCCccccchHHHHh---HHhHHhhCCCeEEE--EecCcc
Q 015880 83 GEKF-YLYTGRGPSSEALHLGHLVPFMF---TKYLQDAFKVPLVI--QLTDDE 129 (399)
Q Consensus 83 ~~~~-~iytG~~PTg~slHlGhlv~~~~---~~~lQ~~~~~~v~I--~I~D~~ 129 (399)
++++ .=|+.--||| .||+||+-...+ +..+.+..|..|.- -|+||=
T Consensus 29 ~~~v~vE~ss~n~~~-~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 29 QESFLLEYVSANPTG-PLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp SCEEEEECCCCCSSS-SCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred CCEEEEEeCCCCCCC-CCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCcc
Confidence 3443 3367888998 799999877642 33344444665543 378875
No 95
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=23.03 E-value=40 Score=34.86 Aligned_cols=49 Identities=22% Similarity=0.157 Sum_probs=31.5
Q ss_pred eeeccccCchhHHHHHHHHHHHhCCC-CcceeecccccCCCCCCCCCCCCCCC
Q 015880 233 CLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPN 284 (399)
Q Consensus 233 ~~v~~G~DQd~~~~l~rdla~r~~~~-kp~~l~~~~lp~L~g~g~KMSKS~~n 284 (399)
+.|.+|.|...+--.-.-|.+.+|.+ .|...+...| .++ |+|||||.++
T Consensus 225 THviRg~e~~~n~~~q~~l~~alg~~~~P~~~~f~hL-n~~--g~KLSKR~~~ 274 (553)
T 1qtq_A 225 THSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRL-NLE--YTVMSKRKLN 274 (553)
T ss_dssp SEEEEEGGGTTTHHHHHHHHHTSCCSCCCEEEEECCC-CBT--TSCCCHHHHH
T ss_pred ceEeeccchhhhHHHHHHHHHHcCCCCCCCeEEEEee-cCC--Cccccccccc
Confidence 46788988666554445556778876 4644443333 455 4899999765
No 96
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=20.74 E-value=1.7e+02 Score=19.95 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhHHHHHHH
Q 015880 360 QRLAKVLTELVERHQVARAAVTDEMVDAF 388 (399)
Q Consensus 360 ~~la~~i~~~l~~~r~~~~~~~~~~l~~~ 388 (399)
..|+..|..+|...+.|++..++..+.+.
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~ri 33 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRI 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999998755554
Done!