RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 015880
(399 letters)
>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase.
Length = 383
Score = 799 bits (2065), Expect = 0.0
Identities = 333/383 (86%), Positives = 359/383 (93%), Gaps = 2/383 (0%)
Query: 15 QVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72
QVV+PWEVS+ GKIDYDKL+DKFGCQRLD SL+DRV+RLTGRP H FLRRGVFFAHRD
Sbjct: 1 QVVTPWEVSAKDGGKIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRD 60
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
L +ILDAYEKGEKFYLYTGRGPSSEALHLGHL+PFMFTKYLQDAFKVPLVIQLTDDEK +
Sbjct: 61 LEEILDAYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFL 120
Query: 133 WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
WKNLSVEESQRLARENAKDIIACGFDV +TFIFSDFDYVGGAFYKNMVK+AKCVT N+V
Sbjct: 121 WKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVGGAFYKNMVKIAKCVTLNQVR 180
Query: 193 GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252
GIFGF+GED+IGK+SFP VQA PSFPSSFPHLF GKD LRCLIPCAIDQDPYFRMTRDVA
Sbjct: 181 GIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVA 240
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESV 312
PR+GY+KPALIES FFPALQGE+GKMSASDPNSAIYVTD+ K IKNKINKYAFSGGQ++V
Sbjct: 241 PRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQDTV 300
Query: 313 ELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 372
E HR+LGANLEVDIP KYL+FFLEDDAELE IKKEYG+G MLTGEVK+RL +VLTE+VER
Sbjct: 301 EEHRELGANLEVDIPWKYLNFFLEDDAELERIKKEYGSGRMLTGEVKKRLIEVLTEIVER 360
Query: 373 HQVARAAVTDEMVDAFMAVRPLP 395
HQ ARAAVTDEMVDAFMAVRPLP
Sbjct: 361 HQRARAAVTDEMVDAFMAVRPLP 383
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed.
Length = 368
Score = 353 bits (908), Expect = e-120
Identities = 144/383 (37%), Positives = 215/383 (56%), Gaps = 28/383 (7%)
Query: 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
E E +V+PWEVS G +DYDKL ++FG + + L + PH +RRG+ F HR
Sbjct: 1 EDEFMVTPWEVS--GIVDYDKLFEEFGIEPFTEVL-PELPE-----PHPLMRRGIIFGHR 52
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
D + IL+AY G+ F +YTG PS +H+GH + F K+ Q+ F + I + DDE
Sbjct: 53 DYDKILEAYRNGKPFAVYTGFMPSGP-MHIGHKMVFDELKWHQE-FGANVYIPIADDEAY 110
Query: 132 MWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNM-VKVAKCVTYNK 190
+ LS EE++ A E D+IA GFD KT I+ + ++ ++AK V +++
Sbjct: 111 AARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSEN---IKVYDLAFELAKKVNFSE 167
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 250
+ I+GFTGE +IG + +P QA P L G L+P IDQDP+ R+TRD
Sbjct: 168 LKAIYGFTGETNIGHIFYPATQAADIL---HPQLEEGP--KPTLVPVGIDQDPHIRLTRD 222
Query: 251 VAPRI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFS 306
+A R+ G+ KP+ F P L G GKMS+S P SAIY+TD + +K KI K A +
Sbjct: 223 IAERLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKIMK-ALT 279
Query: 307 GGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKV 365
GG+ ++E RKLG + + + L + L EDD EL+ I +E +G +L GE K+ A+
Sbjct: 280 GGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEK 339
Query: 366 LTELVERHQVARAAVTDEMVDAF 388
+ E ++ HQ R E+++ +
Sbjct: 340 IAEFLKEHQEKREEA-REILEKY 361
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model [Protein synthesis, tRNA
aminoacylation].
Length = 327
Score = 295 bits (756), Expect = 5e-98
Identities = 113/319 (35%), Positives = 165/319 (51%), Gaps = 29/319 (9%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+KF + TG PS +HLGH + + TK+LQ F V L I + D K ++ R
Sbjct: 1 KKFRVLTGIQPSG-KMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKQTD-PDALR 57
Query: 144 LAREN-AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDH 202
ARE A D +A G D KTFIF DY Y+ ++ VT+ ++ + F +
Sbjct: 58 KAREELAADYLAVGLDPEKTFIFLQSDY--PEHYELAWLLSCQVTFGELKRMTQFKDKSQ 115
Query: 203 -----IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG- 256
IG +S+P +QA L+P IDQD + +TRD+A R
Sbjct: 116 AENVPIGLLSYPVLQAADILLYQAD-----------LVPVGIDQDQHLELTRDLAERFNK 164
Query: 257 -----YHKPALIESSFFPALQGETG-KMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 310
+ KP + S FFP L G +G KMS SDPNSAI++TD+ K IK KI K A GG+
Sbjct: 165 KFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTDTPKQIKKKIRKAATDGGRV 224
Query: 311 SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 370
++ HR+ + + +YLSFFL DD +L+ I + Y +G + GE K+ L +VL E +
Sbjct: 225 TLFEHREKPGVPNLLVIYQYLSFFLIDDDKLKEIYEAYKSGKLGYGECKKALIEVLQEFL 284
Query: 371 ERHQVARAAVTDEMVDAFM 389
+ Q RA + +E++D +
Sbjct: 285 KEIQERRAEIAEEILDKIL 303
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA
synthetase. Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. TrpRS is a homodimer which
attaches Tyr to the appropriate tRNA. TrpRS is a class I
tRNA synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains class I characteristic
HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 280
Score = 291 bits (746), Expect = 4e-97
Identities = 106/298 (35%), Positives = 147/298 (49%), Gaps = 33/298 (11%)
Query: 87 YLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLA 145
+ +G PS +LHLGH + F F +LQ+A L + D K L EE ++
Sbjct: 1 RVLSGIQPSG-SLHLGHYLGAFRFWVWLQEA-GYELFFFIADLHALTVKQLDPEELRQNT 58
Query: 146 RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT------G 199
RENAKD +ACG D K+ IF D Y+ ++ VT+ ++ + GF
Sbjct: 59 RENAKDYLACGLDPEKSTIFFQSDV--PEHYELAWLLSCVVTFGELERMTGFKDKSAQGE 116
Query: 200 EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH- 258
+IG +++P +QA CL+P IDQDP+ +TRD+A R
Sbjct: 117 SVNIGLLTYPVLQAADILLYKA-----------CLVPVGIDQDPHLELTRDIARRFNKLY 165
Query: 259 -----KPALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQES 311
KPA + S +F P LQG + KMS SDPN+AI++TDS K IK KI K A GG+
Sbjct: 166 GEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMKAATDGGR-- 223
Query: 312 VELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 369
HR+ G V V+ S F DD E EY +GG+ GE K+ LA+ + E
Sbjct: 224 -TEHRRDGGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 238 bits (609), Expect = 4e-76
Identities = 88/327 (26%), Positives = 142/327 (43%), Gaps = 36/327 (11%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEE 140
E +KF + +G PS + LHLG+ + + L + D + EE
Sbjct: 1 ENMKKFRVLSGIQPSGK-LHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEE 59
Query: 141 S-QRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTG 199
++ RE A D +A G D K+ IF + + ++ + ++ + F
Sbjct: 60 DLRQATREVAADYLAVGLDPEKSTIFLQSEV--PEHAELAWLLSCVTNFGELERMTQFKD 117
Query: 200 ED-------HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252
+ IG +++P +QA L+ L+P DQD + +TRD+A
Sbjct: 118 KSAKKGESIPIGLLTYPVLQAADIL------LYQA-----TLVPVGEDQDQHLELTRDIA 166
Query: 253 PRIGYH------KPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYA 304
R + P + + + P L G GKMS SDPNSAI++ D K I+ KI K A
Sbjct: 167 RRFNHLYGEVFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKIKKAA 225
Query: 305 FSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAK 364
G ++ +RK G EV + S F EDD+ LE I+ EY G + GE K+ LA+
Sbjct: 226 TDG--PTLIEYRK-GGKPEVCNLFEIYSAFFEDDSILE-IEAEYRGGELGCGECKKELAE 281
Query: 365 VLTELVERHQVARAAVTDEMVDAFMAV 391
+ E ++ Q R + ++ +
Sbjct: 282 AIQEFLKPIQERREELREDP-AYLDDI 307
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y).
Length = 291
Score = 97.7 bits (244), Expect = 5e-23
Identities = 74/313 (23%), Positives = 118/313 (37%), Gaps = 46/313 (14%)
Query: 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI-----QLTDDEKCMWKNL 136
K +YTG P+ LHLG+LVP M Q A + + D +
Sbjct: 2 KERPLRVYTGFDPTGP-LHLGYLVPLMKLVQFQQAGHEVFFLIGDLTAIIGD-----PSK 55
Query: 137 SVEESQRLAR---ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNKVV 192
S E ENAK +ACG D K+ I ++ D++ + + + + +
Sbjct: 56 SEERKLLSREEVLENAKAQLACGLDPEKSEIVNNSDWLE---HLELAWLLRDLGNHFSLN 112
Query: 193 GIFGFTG----EDHIGKVSF-----PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 243
+ F +S P +QA + L D L P DQ
Sbjct: 113 RMLQFKDVKKRLKQNPGISLGEFTYPLLQA-----ADILLLK--AD----LQPGGSDQWG 161
Query: 244 YFRMTRDVAPRIGYHKPALIESSFFPALQGETG--KMSASDPNSAIYVTDSAKAIKNKIN 301
+ + RD+A R P L G G KMS S NSAI++ D +++ KI
Sbjct: 162 HIELGRDLARRFNKKVFKKPVGLTNPLLTGLDGGKKMSKSAGNSAIFLDDEKESVYKKI- 220
Query: 302 KYAFSGGQESVELHRKLGANLEVDIPV-KYLSFFLEDDA--ELEHIKKEYGAGGMLTGEV 358
+ A++ E+ + L E+ + L FL E E + G + G++
Sbjct: 221 QKAYTDPDR--EVRKDLKLFTELSNEEIEILEAFLGKGPKREAEELLAREVTGLVHGGDL 278
Query: 359 KQRLAKVLTELVE 371
K+ A+ + L+E
Sbjct: 279 KKAAAEAVNALLE 291
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated.
Length = 329
Score = 94.9 bits (237), Expect = 7e-22
Identities = 75/242 (30%), Positives = 110/242 (45%), Gaps = 43/242 (17%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTD-----DEKCMWK 134
E E+ Y G PS + +HLGHL+ LQ A FKV + L D ++K
Sbjct: 26 ESKEEPKAYIGFEPSGK-IHLGHLLTMNKLADLQKAGFKV--TVLLADWHAYLNDKG--- 79
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDF----DYVGGAFYKNMVKVAKCVTY 188
+EE +++A N K A G D KT F+ S+F +Y ++K+AK T
Sbjct: 80 --DLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWL-----LVLKLAKNTTL 132
Query: 189 NKV---VGIFGFTGEDH-IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDP 243
+ + I G E+ + K+ +P +Q F +L I +DQ
Sbjct: 133 ARARRSMTIMGRRMEEPDVSKLVYPLMQVADIF------------YLDVDIAVGGMDQRK 180
Query: 244 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKY 303
+ R+V P++GY KP I + L G KMS S P SAI+V DS + I+ KI K
Sbjct: 181 IHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRKIKK- 239
Query: 304 AF 305
A+
Sbjct: 240 AY 241
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.
Length = 333
Score = 65.9 bits (162), Expect = 6e-12
Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 234 LIPCAIDQDPYFRMTRDVAPRIGYH------KP-ALI--ESSFFPALQGETGKMSASDPN 284
L+P DQ + +TRD+A R P LI + L G T KMS SDPN
Sbjct: 141 LVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPN 200
Query: 285 --SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELE 342
+ I + D K I KI K A + + E+ L EV + S + +E
Sbjct: 201 DNNTINLLDDPKTIAKKIKK-AVTDSERLREIRYDLPNKPEVSNLLTIYSALSGE--SIE 257
Query: 343 HIKKEYGAGGMLTGEVKQRLAKVLTELVE 371
++ EY AGG G+ K+ LA+ + E +
Sbjct: 258 ELEAEYEAGGKGYGDFKKDLAEAVVEFLA 286
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 64.2 bits (157), Expect = 1e-11
Identities = 72/302 (23%), Positives = 124/302 (41%), Gaps = 55/302 (18%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTD--DEKCMWKNLSVE 139
+Y G P++ +LHLGHLVP M + Q A +V ++I + D + K L +E
Sbjct: 3 VYIGFDPTAPSLHLGHLVPLMKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLE 62
Query: 140 ESQRLARENAKDIIACG-FDVTKTFIFSD-FDYVGGAFYKNMVKVAKCVTYNKVVGIFGF 197
+ A+ K + A F + F + D++ + + +++ K T N+++
Sbjct: 63 LIRENAKYYKKQLKAILDFIPPEKAKFVNNSDWLLSLYTLDFLRLGKHFTVNRMLRRDAV 122
Query: 198 TG----EDHIG--KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI---DQDPYFRMT 248
E+ I + +P +QA +L D + DQ +
Sbjct: 123 KVRLEEEEGISFSEFIYPLLQAYDFV-----YLD--VD-------LQLGGSDQRGNITLG 168
Query: 249 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKINKYAFSG 307
RD+ ++GY K + + L G GKMS S+ N+ V DS + KI AF
Sbjct: 169 RDLIRKLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDP 225
Query: 308 GQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 367
+K +F D E+E +++E+ G L + K+ LA+ LT
Sbjct: 226 DVLEF---------------LKLFTFL--DYEEIEELEEEHAEGP-LPRDAKKALAEELT 267
Query: 368 EL 369
+L
Sbjct: 268 KL 269
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
Length = 333
Score = 60.6 bits (148), Expect = 3e-10
Identities = 84/316 (26%), Positives = 130/316 (41%), Gaps = 71/316 (22%)
Query: 90 TGRGPSSEALHLGHLVPFM--FTKYLQDAFKVPLVI---Q-LTDDEKCMWKNLSVEESQR 143
TG P+ LHLGH V + LQ+ + ++I Q LTD+ + ++
Sbjct: 7 TGDRPTG-KLHLGHYVGSLKNRVA-LQNEHEQFVLIADQQALTDN---------AKNPEK 55
Query: 144 LAR---ENAKDIIACGFDVTKTFIF--------SDFDYVGGAFYKNMVKVAKC---VTYN 189
+ R E A D +A G D K+ IF ++ +Y N+V VA+ T
Sbjct: 56 IRRNILEVALDYLAVGIDPAKSTIFIQSQIPELAEL----TMYYMNLVTVARLERNPTVK 111
Query: 190 KVVGIFGFTGEDHI--GKVSFPPVQAVPSFPSSFPHLFSGKDHLRC---LIPCAIDQDPY 244
+ GF I G +++P QA D L+P DQ P
Sbjct: 112 TEIAQKGF--GRSIPAGFLTYPVSQAA--------------DITAFKATLVPVGDDQLPM 155
Query: 245 FRMTRDVAPRIG--YHKPALIE-------SSFFPALQGETGKMSASDPNSAIYVTDSAKA 295
TR++ R Y L+E + P L G+ KMS S N AIY++D A
Sbjct: 156 IEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGK-AKMSKSLGN-AIYLSDDADT 213
Query: 296 IKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLT 355
IK K+ ++ + + + +E ++ YL F D AE+ +K Y GG+
Sbjct: 214 IKKKVMS-MYT---DPNHIRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGD 269
Query: 356 GEVKQRLAKVLTELVE 371
+ K+ L +VL EL+
Sbjct: 270 VKCKRYLEEVLQELLA 285
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 401
Score = 59.2 bits (144), Expect = 1e-09
Identities = 70/344 (20%), Positives = 117/344 (34%), Gaps = 78/344 (22%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTDD 128
+ L + +Y G P++ +LHLGHLVP M + QDA K ++I + D
Sbjct: 22 EELRKLLEEGPLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIGD- 80
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA-FYKNM------VK 181
+ EE + L RE + F+ + ++V + + K +
Sbjct: 81 -----PSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRD 135
Query: 182 VAKCVTYNKVVGIFGFTG----EDHIG--KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI 235
V K + N+++ E I + ++P +QA +L KD
Sbjct: 136 VGKHFSVNRMLRRDDVKKRLEREQGISFTEFNYPLLQAYDFV-----YL--NKD------ 182
Query: 236 PCAI---DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGE-------TGKMSASDPNS 285
+ DQ RD+ R+G K + + L G+ S+ S
Sbjct: 183 -LQLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGGAVWLDSEKTS 241
Query: 286 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHI 344
I++ K ++L E+E I
Sbjct: 242 PYDFYQYWMNIEDADVK--------------------------RFLKLLTFLSLEEIEEI 275
Query: 345 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 388
+K G E K+ LAK +T+LV + A AA +E F
Sbjct: 276 EKYVLKGPEPR-EAKKLLAKEVTKLVHGEEAAEAAE-EEFEKLF 317
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase. This tyrosyl-tRNA
synthetase model starts picking up tryptophanyl-tRNA
synthetases at scores of 0 and below. The proteins found
by this model have a deep split between two groups. One
group contains bacterial and organellar eukaryotic
examples. The other contains archaeal and cytosolic
eukaryotic examples [Protein synthesis, tRNA
aminoacylation].
Length = 377
Score = 50.5 bits (121), Expect = 8e-07
Identities = 63/287 (21%), Positives = 108/287 (37%), Gaps = 47/287 (16%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVP 120
+RG+ + ++L K LY G P++ +LHLGHLVP + + Q A +V
Sbjct: 9 KKRGLEVQVPEEEELLK--LLERKIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGHEVI 66
Query: 121 LVI-----QLTD--DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG 173
+++ + D + K L+ EE Q A EN K IA D K ++ +++
Sbjct: 67 VLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLK 125
Query: 174 AFYKNMV-KVAKCVTYNKVVGIFGFT---GEDH-IGKVSFPPVQAVPSFPSSFPHLFSGK 228
Y + + + K + N+++ F+ + + +P +QA F +L
Sbjct: 126 LNYIDFIRDLGKIFSVNRMLRRDAFSSRLERGISLSEFIYPLLQAY-----DFVYL--NV 178
Query: 229 DHLRCLIPCAI---DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG---------ETG 276
D I DQ RD+ R P+L P L E G
Sbjct: 179 D-------LQIGGSDQWGNILKGRDLIRRNL---PSLGFGLTVPLLTPADGEKMGKSEGG 228
Query: 277 KMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGAN 321
+S + + + ++ KI K G E +E +L
Sbjct: 229 AVSLDEGKYDFYQFWINTPDEDVKKILKLFTFLGLEEIEALVELKGP 275
>gnl|CDD|240282 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provisional.
Length = 383
Score = 47.0 bits (112), Expect = 9e-06
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 258 HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 302
KP ++ P L KMS SDPNSAI++ DS + + KI K
Sbjct: 238 KKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMEDSEEDVNRKIKK 282
>gnl|CDD|237360 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.
Length = 410
Score = 41.8 bits (99), Expect = 5e-04
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG D + + ++G+ LY G P++ +LH+GHLVP M K QDA P+++
Sbjct: 12 RGAINQETDEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGHRPVIL 71
>gnl|CDD|235645 PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.
Length = 408
Score = 41.6 bits (99), Expect = 5e-04
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ D + L+ E +Y G P++ +LHLGHLVP + + QDA
Sbjct: 13 RGLIEQITDEEE-LEEKLAKEPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDA 64
>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA
and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA
synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. These enzymes attach Tyr or Trp,
respectively, to the appropriate tRNA. These class I
enzymes are homodimers, which aminoacylate the 2'-OH of
the nucleotide at the 3' of the appropriate tRNA. The
core domain is based on the Rossman fold and is
responsible for the ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. It contains the class
I characteristic HIGH and KMSKS motifs, which are
involved in ATP binding.
Length = 273
Score = 41.1 bits (96), Expect = 6e-04
Identities = 56/312 (17%), Positives = 100/312 (32%), Gaps = 70/312 (22%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARE 147
LY G P++++LH+GHL+ + + Q A P+ + + E E
Sbjct: 2 LYCGIDPTADSLHIGHLIGLLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPE 61
Query: 148 N--------AKDIIACGFDVTKT--FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF 197
A +A G T +F++ D+ G + ++ K V +
Sbjct: 62 EVRQNIRRIAAQYLAVGIFEDPTQATLFNNSDWPGPLAHIQFLR-----DLGKHVYVNYM 116
Query: 198 TGEDHI----------GKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFR 246
+ + ++PP+QA F L + C + P DQ
Sbjct: 117 ERKTSFQSRSEEGISATEFTYPPLQAA-----DFLLLNT---TEGCDIQPGGSDQWGNIT 168
Query: 247 MTRDVAPR-----IGYHK-PALIESSFFPALQGETGKMSASDPNSAIYVT--DSAKAIKN 298
+ R++A R I L+ P K S+ T S
Sbjct: 169 LGRELARRFNGFTIAEGLTIPLVTKLDGP-------KFGKSESGPKWLDTEKTSPYEF-- 219
Query: 299 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAE-LEHIKKEYGAGGMLTGE 357
Y F ++ L KY +F +++ E LE + E
Sbjct: 220 ----YQFWINAVDSDVINIL----------KYFTFLSKEEIERLEQEQYE----APGYRV 261
Query: 358 VKQRLAKVLTEL 369
++ LA+ +T+
Sbjct: 262 AQKTLAEEVTKT 273
>gnl|CDD|173541 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provisional.
Length = 682
Score = 36.8 bits (85), Expect = 0.020
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 239 IDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 297
+DQ + R+ IG KP ++ L+ KMS SDP+SAI++ D+ + +
Sbjct: 183 LDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVA 242
Query: 298 NKI 300
KI
Sbjct: 243 RKI 245
>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase.
Length = 389
Score = 35.9 bits (83), Expect = 0.032
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 23/92 (25%)
Query: 234 LIPCAIDQDPYFRMTRDVAPRI-------------GYHKPAL-IESSFFP-------ALQ 272
L+P DQ + +TRD+A R+ G + + P +L
Sbjct: 187 LVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLT 246
Query: 273 GETGKMSASDPN--SAIYVTDSAKAIKNKINK 302
T KMS S P+ S I + D I NKI +
Sbjct: 247 DGTSKMSKSAPSDQSRINLLDPPDVIANKIKR 278
>gnl|CDD|224465 COG1548, COG1548, Predicted transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism].
Length = 330
Score = 30.9 bits (70), Expect = 1.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 359 KQRLAKVLTELVERHQVARAAV--TDEMVDAF 388
K RL + L E+V + V V T E+ DAF
Sbjct: 38 KDRLEETLKEIVHKDNVDYVGVVMTAELADAF 69
>gnl|CDD|236054 PRK07573, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 640
Score = 30.6 bits (70), Expect = 1.5
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 270 ALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVE-LHRKLG 319
A T K+S P ++ ++++I++ G+ +V+ HR+LG
Sbjct: 463 ADTIGTPKVSTDHPE----FKEAEAEVQDRIDRLLNIKGKRTVDSFHRELG 509
>gnl|CDD|202477 pfam02936, COX4, Cytochrome c oxidase subunit IV. Cytochrome c
oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the
terminal oxidase in the mitochondrial electron transport
chain. This family is composed of cytochrome c oxidase
subunit IV. The Dictyostelium member of this family is
called COX VI. The yeast protein MTC3 appears to be the
yeast COX IV subunit.
Length = 142
Score = 28.5 bits (64), Expect = 3.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 120 PLVIQLTDDEKCMWKNLSVEESQRLAR 146
L++ L + EK WK+LS+EE + L R
Sbjct: 31 ELIMALREKEKGDWKSLSLEEKKALYR 57
>gnl|CDD|227204 COG4867, COG4867, Uncharacterized protein with a von Willebrand
factor type A (vWA) domain [General function prediction
only].
Length = 652
Score = 29.6 bits (66), Expect = 3.8
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 20 WEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDA 79
W S + Y+++ D G + LDQ Q L G RR V DLND+LD
Sbjct: 140 WR-SGQAREKYEQIKDLLGRELLDQRFAGMKQALAGATDDD--RRRVTEMLDDLNDLLDK 196
Query: 80 YEKGE 84
+ +GE
Sbjct: 197 HARGE 201
>gnl|CDD|215101 PLN00203, PLN00203, glutamyl-tRNA reductase.
Length = 519
Score = 28.9 bits (65), Expect = 5.2
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 349 GAGGMLTGEVKQRLAKVLTEL--VERHQVARAAVTDEMVDAFMAVRPLPNMFD 399
GAG M VK ++K T++ V R + AA+ +E D + +PL M
Sbjct: 273 GAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLA 325
>gnl|CDD|220664 pfam10267, Tmemb_cc2, Predicted transmembrane and coiled-coil 2
protein. This family of transmembrane coiled-coil
containing proteins is conserved from worms to humans.
Its function is unknown.
Length = 387
Score = 28.6 bits (64), Expect = 5.5
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 27/172 (15%)
Query: 212 QAVPSFPSSFPHL----FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF 267
QAV S P F L F D++ L +D + PR L+ S
Sbjct: 115 QAVVSKPREFASLIRNKFGSADNIAHL------KDSLEDGGPEENPRNLSGSATLVLSPK 168
Query: 268 FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIP 327
+ + S+ +SA + SA A N + + Q+ KL L +I
Sbjct: 169 YGSDDS-------SECSSA--TSSSAGANSNSGSGPGSAVAQQQSLNLDKLLEELR-EIK 218
Query: 328 VKYLSFFLEDDAEL--EHIKKEYGAGGMLTGEVK---QRLAKVLTELVERHQ 374
LE+ E E ++++Y E + +RL + L +L E HQ
Sbjct: 219 EGQSR--LEESYERLKEQLQRDYQYITQSLQEERYRYERLEEQLNDLTELHQ 268
>gnl|CDD|221242 pfam11816, DUF3337, Domain of unknown function (DUF3337). This
family of proteins are functionally uncharacterized.
This family is only found in eukaryotes. This presumed
domain is typically between 285 to 342 amino acids in
length.
Length = 320
Score = 28.7 bits (64), Expect = 6.2
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 17/70 (24%)
Query: 327 PVKYLSFFLE--DDAELEHIKKEYGAGG--------MLTGEVKQRLAKVLTELVERHQVA 376
P K +SF L+ D + +K + G ML R+ K+L + ER +
Sbjct: 211 PPK-ISFTLQPWDGSLPPLVKPDPINEGNSRLNAPRML------RVKKILAYVAERFEPD 263
Query: 377 RAAVTDEMVD 386
+ T EM
Sbjct: 264 PESRTSEMKK 273
>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional.
Length = 478
Score = 28.4 bits (63), Expect = 7.2
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 328 VKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVL 366
VK+ F DD L + EYG+GG L ++KQRL + L
Sbjct: 128 VKHFDDFKSDDKLL--LIMEYGSGGDLNKQIKQRLKEHL 164
>gnl|CDD|130743 TIGR01682, moaD, molybdopterin converting factor, subunit 1,
non-archaeal. This model describes MoaD. It excludes
archaeal homologs, since many Archaea have two MoaD-like
proteins, suggesting two different functions. The Pfam
model pfam02597 describes both the thiamine biosynthesis
protein ThiS and this protein, MoaD, a subunit (together
with MoaE, pfam02391) of the molybdopterin converting
factor. Both ThiS and MoaD are involved in sulfur
transfer reactions. Distribution of this family appears
limited to species that also have a member of pfam02391,
but a number of Archaea have two different members,
suggesting functionally distinct subtypes. The
C-terminal Gly-Gly of this model is critical to function
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Molybdopterin].
Length = 80
Score = 26.5 bits (59), Expect = 7.4
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 328 VKYLSF-FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVD 386
+K L F L + A + E GE+K+ LAK EL AV +E V
Sbjct: 1 IKVLYFARLREQAGTDEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVT 60
Query: 387 AFMAVRP 393
+
Sbjct: 61 DDALLNE 67
>gnl|CDD|214538 smart00146, PI3Kc, Phosphoinositide 3-kinase, catalytic domain.
Phosphoinositide 3-kinase isoforms participate in a
variety of processes, including cell motility, the Ras
pathway, vesicle trafficking and secretion, and
apoptosis. These homologues may be either lipid kinases
and/or protein kinases: the former phosphorylate the
3-position in the inositol ring of inositol
phospholipids. The ataxia telangiectesia-mutated gene
produced, the targets of rapamycin (TOR) and the
DNA-dependent kinase have not been found to possess
lipid kinase activity. Some of this family possess PI-4
kinase activities.
Length = 240
Score = 28.0 bits (63), Expect = 7.8
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 70 HRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129
H D IL K F VPF T + D V+ +
Sbjct: 162 HIDFGFILGNGPKLFGF---------------PERVPFRLTPEMVD------VMGDSGYF 200
Query: 130 KCMWKNLSVEESQRLARENAKDIIAC 155
E + R R+N+ I++
Sbjct: 201 GLFRSL--CERALRALRKNSNLIMSL 224
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.410
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,013,809
Number of extensions: 2088359
Number of successful extensions: 2281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2241
Number of HSP's successfully gapped: 39
Length of query: 399
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 300
Effective length of database: 6,546,556
Effective search space: 1963966800
Effective search space used: 1963966800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)