RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015880
(399 letters)
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 496 bits (1279), Expect = e-176
Identities = 243/399 (60%), Positives = 309/399 (77%), Gaps = 4/399 (1%)
Query: 4 NEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVF 61
N E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH F
Sbjct: 25 NHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHF 84
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
LRRG+FF+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPL
Sbjct: 85 LRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPL 144
Query: 122 VIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNM 179
VIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+
Sbjct: 145 VIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNV 204
Query: 180 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239
VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCAI
Sbjct: 205 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAI 264
Query: 240 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 299
DQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK K
Sbjct: 265 DQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTK 324
Query: 300 INKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVK 359
+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K
Sbjct: 325 VNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELK 384
Query: 360 QRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 398
+ L +VL L+ HQ R VTDE+V FM R L F
Sbjct: 385 KALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 423
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 497 bits (1280), Expect = e-175
Identities = 242/399 (60%), Positives = 308/399 (77%), Gaps = 4/399 (1%)
Query: 4 NEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVF 61
N E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH F
Sbjct: 72 NHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHF 131
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
LRRG+FF+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPL
Sbjct: 132 LRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPL 191
Query: 122 VIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNM 179
VIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+
Sbjct: 192 VIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNV 251
Query: 180 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239
VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCAI
Sbjct: 252 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAI 311
Query: 240 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 299
DQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK K
Sbjct: 312 DQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTK 371
Query: 300 INKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVK 359
+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K
Sbjct: 372 VNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELK 431
Query: 360 QRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 398
+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 432 KALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAAAL 470
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 490 bits (1263), Expect = e-174
Identities = 155/383 (40%), Positives = 228/383 (59%), Gaps = 18/383 (4%)
Query: 14 EQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDL 73
E V+PWEV G +DYDKLI FG L + L+++ LT +F RR FF+HRD
Sbjct: 4 EFKVTPWEVE--GVVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDY 61
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW 133
+ IL YE+G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++
Sbjct: 62 DLILKDYEEGRGFFLYTGRGPSGP-MHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLF 120
Query: 134 K-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
K NL+ ++++R A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++
Sbjct: 121 KENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAK 178
Query: 193 GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252
+FGFT + IG + FP +Q P+F CLIP AIDQDPY+R+ RD A
Sbjct: 179 AVFGFTEQSKIGMIFFPAIQIAPTFFERKR----------CLIPAAIDQDPYWRLQRDFA 228
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESV 312
+GY+K A + S F P+L +GKMSAS P +AIY+TDS + ++ K+ K+ +GG+ ++
Sbjct: 229 ESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTL 288
Query: 313 ELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 371
+ R+ G E + K+L FF EDD +L+ G + GE K+ L + E ++
Sbjct: 289 KEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLK 348
Query: 372 RHQVARAAVTDEMVDAFMAVRPL 394
HQ R +++V+ F L
Sbjct: 349 EHQ-RRRKKAEKLVEKFKYTGKL 370
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 490 bits (1263), Expect = e-173
Identities = 206/401 (51%), Positives = 283/401 (70%), Gaps = 8/401 (1%)
Query: 2 DKNEEKQREEEREQVVSPWEVS-------SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLT 54
+ E + + +EQVV+PW+V + IDYDKLI +FG + +++ + R +++T
Sbjct: 12 QQVSELKSTDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVT 71
Query: 55 GRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ 114
GR PH FLR+G+FF+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ
Sbjct: 72 GREPHHFLRKGLFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQ 131
Query: 115 DAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG 173
+ F VPLVI+LTDDEK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GG
Sbjct: 132 EVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGG 191
Query: 174 AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 233
AFY+ +V+V++ +T + +FGF D IGK F +Q +FPSSFP++ D C
Sbjct: 192 AFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPC 251
Query: 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 293
LIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+
Sbjct: 252 LIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTP 311
Query: 294 KAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGM 353
K I+ KINKYAFSGGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y +G +
Sbjct: 312 KQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGEL 371
Query: 354 LTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 394
L+GE+K+ + L E V+ Q RA V +E +D FM L
Sbjct: 372 LSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 474 bits (1222), Expect = e-168
Identities = 207/381 (54%), Positives = 279/381 (73%), Gaps = 4/381 (1%)
Query: 15 QVVSPWEVS--SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72
PWEV ++ IDY+KLIDKFGC+ + + +++R++RLTG+ H F RR +F +HRD
Sbjct: 2 PGSMPWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRD 61
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
ILD YEKGE FYLYTGRGPSSE+LH+GHLVPF+FTKYLQD FKVPLVIQLTDDEK +
Sbjct: 62 FEKILDVYEKGELFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFI 121
Query: 133 WKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKV 191
+K+ L++EE+ A EN KDIIACGFD TFIF++ +Y+ Y +++++ K ++ +++
Sbjct: 122 FKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA-ELYPDILRIEKKISCSQI 180
Query: 192 VGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 251
IFGF ++GK +FP VQA P+F SSFPH+F G+ + CL+P AIDQDPYFRM RDV
Sbjct: 181 KSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDV 240
Query: 252 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQES 311
APR+GY KP+ I S F P+LQG KMSAS NS+I+V D+ ++I+NKI KYAFSGGQ +
Sbjct: 241 APRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQAT 300
Query: 312 VELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 371
E R+LGANL+VD+ +YL F +EDD +LE I K+Y +G ML+GE+K L + L +L +
Sbjct: 301 EEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLTK 360
Query: 372 RHQVARAAVTDEMVDAFMAVR 392
HQ R A+ D+++ F
Sbjct: 361 NHQKNREAINDDVIAKFTNKS 381
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 467 bits (1204), Expect = e-165
Identities = 173/396 (43%), Positives = 260/396 (65%), Gaps = 10/396 (2%)
Query: 5 EEKQREEEREQVVSPWEVSSSG------KIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPP 58
+ + EQ ++PW+V IDYDK+I++FGC++ +Q+L DR+++L+G+P
Sbjct: 15 QTQGPGSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPA 74
Query: 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFK 118
H F RRG+ FAHRD N +LD FYLYTGRGPSS+ +H+GH +PF+ KY+QDAFK
Sbjct: 75 HYFFRRGIVFAHRDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFK 134
Query: 119 VPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN 178
+ LVIQ+TDDEK +WK++ +E++ REN KDI+ GFD T+IFS+ + F +N
Sbjct: 135 IRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEA-SHHFEEN 193
Query: 179 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 238
++K++K + N+ + +FGF +IG+V FP + P F SSF + G CL+P A
Sbjct: 194 ILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAA 250
Query: 239 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 298
+DQDP+FR+ RD A +G KP+ I S P L+G KMSASDPNS+IY+ D+ I+
Sbjct: 251 VDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRK 310
Query: 299 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 358
KI YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE + Y G + + E+
Sbjct: 311 KIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEM 370
Query: 359 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 394
K++ V+ E V R+Q +R VTD+ + AF+ +
Sbjct: 371 KEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 463 bits (1192), Expect = e-163
Identities = 209/388 (53%), Positives = 282/388 (72%), Gaps = 5/388 (1%)
Query: 8 QREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVF 67
E VV+PW V G ++YDKLI FG +D++L++R++R+ G+ PH FLRRG+F
Sbjct: 3 HHHHHHEAVVTPWSVE--GDVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIF 60
Query: 68 FAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
F+HRDLN +LD YE G+ FYLYTGRGPSSE++H+GHL+PFMFTK+LQD+F+VPLVIQ+TD
Sbjct: 61 FSHRDLNLLLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTD 120
Query: 128 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 187
DEK ++N+ +E+ + + EN KDIIA GFD TFIF DFDY+ G Y+ + K+ + T
Sbjct: 121 DEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM-GCMYRTVAKIERAFT 179
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS-GKDHLRCLIPCAIDQDPYFR 246
++V G FGF ED+ G+ FP +QA PSF ++FPH+F ++ CLIP AIDQDPYFR
Sbjct: 180 ASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFR 239
Query: 247 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFS 306
+TRD+APR+GY KPA+I S FFP L G GKMS+S A+ +TD+ K +K+KINK+AFS
Sbjct: 240 LTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGT-AVLLTDTEKMVKDKINKHAFS 298
Query: 307 GGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVL 366
GG + + H LGAN+EVD+P+++LSFFLEDD EL +KKEY G ++TGEVK+ L +
Sbjct: 299 GGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTI 358
Query: 367 TELVERHQVARAAVTDEMVDAFMAVRPL 394
T + + HQ R VTDE V F + R +
Sbjct: 359 TAITKTHQEKRKLVTDEDVQLFTSTRIM 386
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 455 bits (1172), Expect = e-160
Identities = 109/388 (28%), Positives = 210/388 (54%), Gaps = 8/388 (2%)
Query: 10 EEEREQVVSPWEV---SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGV 66
Q +P ++ ++ DY++LI+ G + + R+++L+G+ PH +L RGV
Sbjct: 4 HHHHHQTQTPSQLLQSFTTRTTDYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGV 63
Query: 67 FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT 126
F A + L+ LD E + +++ + P E + L + F +YLQDAF + ++IQ+
Sbjct: 64 FLAEKSLDKFLDDVEAKKPTFIFIQKYPQKE-VALEEYITLEFARYLQDAFNIQVIIQIL 122
Query: 127 DDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV 186
DD K + + ++ E+ +++ + K I+A GF+ KTFI++D+ Y G Y+ + V K
Sbjct: 123 DDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG-KMYRTISLVEKAT 181
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFR 246
YN V F F D+IGK++ P + F S+ H FS RCL+ +I +
Sbjct: 182 AYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDSIKNVQFHS 239
Query: 247 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFS 306
+ +A + + +P ++ P L G K +++I ++D+AK ++ KINK AFS
Sbjct: 240 IIDQIATTLNFIQPTVLFHKMVPLLSGV-TKFDIPSDHNSILLSDNAKQVERKINKLAFS 298
Query: 307 GGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVL 366
GG+ + E H+KLG ++D+ + L+ F D+A+++ ++++Y G +L+GE+K+ ++ +
Sbjct: 299 GGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASM 358
Query: 367 TELVERHQVARAAVTDEMVDAFMAVRPL 394
+ + + + +T + A+++
Sbjct: 359 KDFIVAYDAKKKPITTAYLKAYISKTKF 386
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 423 bits (1089), Expect = e-147
Identities = 181/450 (40%), Positives = 248/450 (55%), Gaps = 56/450 (12%)
Query: 1 MDKNEEKQREEEREQVVSPWEV------SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLT 54
M + Q P + + + + Y+ +I +FG + L+ R + +T
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMMETDATAEAAAVAYEDIITRFGAAPITDDLLKRFETVT 60
Query: 55 GRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ 114
G H LRRG+F+AHRD + L YEKG Y+YTGRGPSS ALHLGHL+PF+FTKYLQ
Sbjct: 61 GTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPFIFTKYLQ 120
Query: 115 DAFKVPLVIQLTDDEKCMW-KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG- 172
DAFK +VIQ+TDDEK + ++LS E REN KDIIACGFD KTFIF + Y+
Sbjct: 121 DAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSL 180
Query: 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH-- 230
Y+ V + + +++ FGF+ + ++G +FPP Q +P + + F L +
Sbjct: 181 KNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLP 240
Query: 231 ----------------------------------------------LRCLIPCAIDQDPY 244
CLI I+QDPY
Sbjct: 241 VGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPY 300
Query: 245 FRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYA 304
FR+ RD+APR+G+ K A + F P LQG KMSASDPNSAIY+TD+ IKNKIN+YA
Sbjct: 301 FRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIKNKINRYA 360
Query: 305 FSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAK 364
FSGG+++ E HR GA+L VD+ V+YL F++DDAELE +K +Y G +LTGEVK L
Sbjct: 361 FSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIG 420
Query: 365 VLTELVERHQVARAAVTDEMVDAFMAVRPL 394
+L L++ H R V M+++F + L
Sbjct: 421 ILQGLIKEHAERRDKVDTTMIESFTVKKEL 450
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 278 bits (713), Expect = 2e-91
Identities = 59/341 (17%), Positives = 122/341 (35%), Gaps = 26/341 (7%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
+ L+ + + G F Y G PS +H+ + + +
Sbjct: 17 QLLSIAEECETLDRLKQLVDSGRIFTAYNGFEPSGR-IHIAQALITVMNTNNMIECGGQM 75
Query: 122 VIQLTDDEKCM--WKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYK 177
+I + D M N + + + L R + ACG ++ T S+F ++ +
Sbjct: 76 IIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIE 135
Query: 178 NMVKVAKCVTYNKV---VGIFGFTGEDHI--GKVSFPPVQAVPSFPSSFPHLFSGKDHLR 232
M+ +A+ T ++V I G D + ++ +P +QA F
Sbjct: 136 RMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAADVFELVPEG--------I 187
Query: 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 292
+ IDQ + + A G P + +L G KMS SDP AI++ D+
Sbjct: 188 DICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT 247
Query: 293 AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGG 352
+ + KI++ + + + L+ + ++E I++++
Sbjct: 248 EQEVSEKISRAYCTDETF--DNPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDF--SS 303
Query: 353 MLTGEVKQRLAKVLTELV----ERHQVARAAVTDEMVDAFM 389
M E+K +A + ++ E + + V ++
Sbjct: 304 MNKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQ 344
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 124 bits (312), Expect = 4e-32
Identities = 68/356 (19%), Positives = 121/356 (33%), Gaps = 55/356 (15%)
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEK 130
+ D+L+ + LY G P+ H G+ VP A +V + L D
Sbjct: 28 IIKDVLEV--QKRHLKLYWGTAPTGR-PHCGYFVPMTKLADFLKAGCEV--TVLLADLHA 82
Query: 131 CMWKNLSVEESQRLARENAKDII--------ACGFDVTKT-FIFSDFDYVGGAFYKNMVK 181
+ + E + AK + + K F+ + + ++ +
Sbjct: 83 FLDNMKAPLE---VVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFR 139
Query: 182 VAKCVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237
++ V+ N + + +P +QA+ L
Sbjct: 140 LSNIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQALDEQ------------FLDVDCQF 187
Query: 238 A-IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 296
+DQ F + + P +GY K A + + P L GKMSASDPNS I + + K +
Sbjct: 188 GGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQG-GKMSASDPNSKIDLLEEPKQV 246
Query: 297 KNKINKYAFSGGQ-------ESVELHRKLGANLEVDIPVKYLSFFLEDD---------AE 340
K KIN S G V+ + E+ + FF++
Sbjct: 247 KKKINSAFCSPGNVEENGLLSFVQYV--IAPIQELKFGTNHFEFFIDRPEKFGGPITYKS 304
Query: 341 LEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 396
E +K + + ++K +A + EL+E + A E +A P+
Sbjct: 305 FEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFAN-NKEFQEASEKGYPVAT 359
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 114 bits (286), Expect = 1e-28
Identities = 55/320 (17%), Positives = 114/320 (35%), Gaps = 39/320 (12%)
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMF-TKYLQDA---FKVPLVIQ--LTD 127
+++ K Y G PS +H+ + L F + +
Sbjct: 45 DELRVKLLLKRKLICYDGFEPSGR-MHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLN 103
Query: 128 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYKNMV-KVAK 184
++ M +L ++ +++ + +CG ++ S+ Y ++V +++
Sbjct: 104 NK--MSGDL--KKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISR 159
Query: 185 CVTYNKVVGIFGFTG-----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCA 238
N++ G E++ ++ +P +Q F L +
Sbjct: 160 SFNINRMKRCLKIMGRSEGEENYCSQILYPCMQCADIF------------FLNVDICQLG 207
Query: 239 IDQDPYFRMTRDVAPRIGYHKPALIES-SFFPALQGETGKMSASDPNSAIYVTDSAKAIK 297
IDQ + R+ K +I S P L KMS SD NSAI++ DS +
Sbjct: 208 IDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSESDVN 267
Query: 298 NKINK-YAFSGGQE-----SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAG 351
KI K Y E + + E ++ K + + L+ ++ +Y G
Sbjct: 268 RKIKKAYCPPNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNG 327
Query: 352 GMLTGEVKQRLAKVLTELVE 371
+ ++K +A + +L++
Sbjct: 328 FIHPLDLKDNVAMYINKLLQ 347
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 105 bits (264), Expect = 8e-25
Identities = 57/322 (17%), Positives = 112/322 (34%), Gaps = 49/322 (15%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFM--FTKYLQDAFKVPLVI----QLTDDEKCMWK 134
EK Y G PS +H+ + K + + L +D+ +
Sbjct: 36 EKKPLIRCYDGFEPSGR-MHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDK--VGG 92
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDFDYVGGAFY-KNMVKVAKCVTYNKV 191
L E+ + + R + A G D+ K F++ S+ Y + ++ + + T ++
Sbjct: 93 EL--EKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARI 150
Query: 192 ---VGIFGFTGEDH-IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFR 246
I G T +V +P +Q F L+ + +DQ
Sbjct: 151 KKCCTIMGKTEGTLTAAQVLYPLMQCCDIF------------FLKADICQLGLDQRKVNM 198
Query: 247 MTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAF 305
+ R+ IG KP ++ L+ KMS SDP+SAI++ D+ + + KI + A+
Sbjct: 199 LAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ-AY 257
Query: 306 -------SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAEL---------EHIKKEYG 349
+ V + + + A E +++ +
Sbjct: 258 CPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFV 317
Query: 350 AGGMLTGEVKQRLAKVLTELVE 371
+ + +K L + L+E
Sbjct: 318 SDEVSEDALKSCLIDEVNALLE 339
Score = 89.5 bits (222), Expect = 2e-19
Identities = 31/242 (12%), Positives = 73/242 (30%), Gaps = 26/242 (10%)
Query: 139 EESQRLARENAKDIIACGFDVTKTFIF-SDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFG 196
++ + N + A G + + ++ + V +A+ + V ++G
Sbjct: 438 KDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYG 497
Query: 197 FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 256
+ G+V ++ L H + R+
Sbjct: 498 GEVRN-AGQVIAALMRVAT-------ALMLSVSH----VISTSLDGHINAFAREYTKERI 545
Query: 257 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQES----V 312
PAL + + +Y+ D+ I+ KI K A+S E +
Sbjct: 546 --DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNEEANPVI 602
Query: 313 ELHRKL---GANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 369
+ + L L ++ E + + G+G + ++K + ++L +
Sbjct: 603 SVAQHLLAQHGALSIERGEANGGNV--SYNTPEALVADCGSGALHPADLKAAVLQLLLDR 660
Query: 370 VE 371
Sbjct: 661 SA 662
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 101 bits (254), Expect = 3e-24
Identities = 72/332 (21%), Positives = 121/332 (36%), Gaps = 52/332 (15%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMW 133
++ G + Y G PS H+G LV K L +A + +
Sbjct: 25 ELKGLLASGARIKGYIGYEPSGV-AHIGWLVWMYKVKDLVEAGVDF--SVLEATWHAYIN 81
Query: 134 KNL--SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GGAFYKNMVKVAKCVTYNK 190
L ++ + AR + + A G V + + ++ +++VAK + +
Sbjct: 82 DKLGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLAR 141
Query: 191 V------VGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDP 243
V +G E K+ +P +Q F ++ I +DQ
Sbjct: 142 VRRALTIMGRRAEEAEVDASKLIYPLMQVSDIF------------YMDLDIALGGMDQRK 189
Query: 244 YFRMTRDVAPRIGYHKPALIESSFFPALQG---------------ETGKMSASDPNSAIY 288
+ RDVA ++G KP I + +LQG KMS S P +A++
Sbjct: 190 AHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVF 249
Query: 289 VTDSAKAIKNKINKYAFSGGQ-------ESVELH--RKLGANLEVDIPVKYLSFFLEDDA 339
V DS I+ KI K Q E + G L VD P KY +
Sbjct: 250 VVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGP--VEYT 307
Query: 340 ELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 371
E ++++Y G + ++K +A+ L E+V
Sbjct: 308 SYEELERDYTDGRLHPLDLKNAVAESLIEVVR 339
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 96.5 bits (240), Expect = 2e-22
Identities = 66/347 (19%), Positives = 120/347 (34%), Gaps = 67/347 (19%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDA-FKVPLVI-----QLTD 127
++ +E G Y G S +HLG L+ Q A K + + + D
Sbjct: 23 NLRHLFEIGAPLQHYIGFEISGY-IHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWIND 81
Query: 128 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYKNMVKVAKC 185
+ + + K I G D K S+ G +++ ++ ++K
Sbjct: 82 KLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEI-LEKGDYWQTVIDISKN 140
Query: 186 VTYNKVVGIF-----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAI 239
VT ++V+ K+ +P +Q F + + +
Sbjct: 141 VTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVADIF------------YQGVTIAHAGM 188
Query: 240 DQDPYFRMTRDVAPRIGYH---------KPALIESSFFPALQGE---------------- 274
DQ + +VA ++ YH KP + LQ
Sbjct: 189 DQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKA 248
Query: 275 TGKMSASDPNSAIYVTDSAKAIKNKINKYAF--------SGGQESVE--LHRKLGANLEV 324
KMS S P SA+++ DS + I+ K+ K AF + + VE + R+ V
Sbjct: 249 QMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAREVRYNPVLDWVEYIIFREEPTEFTV 307
Query: 325 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 371
P K+ E +K+++ G + ++K +A+ L L+E
Sbjct: 308 HRPAKFGG--DVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLE 352
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 83.3 bits (206), Expect = 8e-18
Identities = 55/318 (17%), Positives = 110/318 (34%), Gaps = 39/318 (12%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI----QLTDDE 129
+ L K + +Y G + + H+ + VP A +V ++ D+
Sbjct: 25 EKLKEILKERELKIYWGTATTGK-PHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNM 83
Query: 130 KCMWKNLSVEESQRLARENAKDII-ACGFDVTKTFIFSDFDYVGGAFY-KNMVKVAKCVT 187
K W+ +E K ++ + G + K DY Y ++ +++ VT
Sbjct: 84 KAPWEL--LELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVT 141
Query: 188 YNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQD 242
+ + + +P +QA+ +L+ IDQ
Sbjct: 142 QHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEE------------YLKVDAQFGGIDQR 189
Query: 243 PYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 302
F P +GY K + + P L G KMS+S+ S I + D + +K K+ K
Sbjct: 190 KIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLKK 247
Query: 303 YAFSGGQES-------VELH-RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGML 354
G ++ L + + K+ ++K++ A +
Sbjct: 248 AFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTA--YVDLEKDFAAEVVH 305
Query: 355 TGEVKQRLAKVLTELVER 372
G++K + L +L++
Sbjct: 306 PGDLKNSVEVALNKLLDP 323
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 79.2 bits (196), Expect = 1e-16
Identities = 74/320 (23%), Positives = 131/320 (40%), Gaps = 51/320 (15%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTDD 128
++ E EK Y G PS E +HLGH++ LQ+A F++ +++ L +
Sbjct: 22 ELRQLIETKEKPRAYVGYEPSGE-IHLGHMMTVQKLMDLQEAGFEIIVLLADIHAYLNE- 79
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFY-KNMVKVAKCV 186
K + EE +A N K IA G D ++ F+ +Y Y +++K+A+
Sbjct: 80 -----KG-TFEEIAEVADYNKKVFIALGLDESRAKFVLGS-EYQLSRDYVLDVLKMARIT 132
Query: 187 TYNKVVGIFGFTG----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQ 241
T N+ + + ++ +P +QA+ HL + IDQ
Sbjct: 133 TLNRARRSMDEVSRRKEDPMVSQMIYPLMQALDIA------------HLGVDLAVGGIDQ 180
Query: 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 301
+ R+ PR+GY P + + L G KMS+S + I V D + ++ KI
Sbjct: 181 RKIHMLARENLPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPPEEVERKIR 237
Query: 302 KYAFSGGQ----------ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAG 351
K G + L R + V+ K+ + A E + +++ +G
Sbjct: 238 KAYCPAGVVEENPILDIAKYHILPRF--GKIVVERDAKFGGDV--EYASFEELAEDFKSG 293
Query: 352 GMLTGEVKQRLAKVLTELVE 371
+ ++K +AK L L+E
Sbjct: 294 QLHPLDLKIAVAKYLNMLLE 313
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 72.6 bits (179), Expect = 2e-14
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 16/141 (11%)
Query: 240 DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 291
DQ P TR++ R + L P L G KMS S N AI + D
Sbjct: 171 DQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGD 228
Query: 292 SAKAIKNKINK-YAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 350
SA + K+ Y G + + R G + +L F D A ++ +K +Y A
Sbjct: 229 SADEVARKVMGMYTDPGHLRASDPGRVEGNPV-----FTFLDAFDPDPARVQALKDQYRA 283
Query: 351 GGMLTGEVKQRLAKVLTELVE 371
GG+ +VK+ L VL ++
Sbjct: 284 GGLGDVKVKKHLIDVLNGVLA 304
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 68.8 bits (169), Expect = 3e-13
Identities = 66/314 (21%), Positives = 119/314 (37%), Gaps = 48/314 (15%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTDD 128
+ L K ++ Y G PS + +HLGH + LQ+A F + +++ L
Sbjct: 18 EELREVLKKDEKSAYIGFEPSGK-IHLGHYLQIKKMIDLQNAGFDIIILLADLAAYLNQ- 75
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI-FSDFDYVGGAFYKNMVKVAKCVT 187
K +E +++ N K A G ++ S+F + N+ ++A T
Sbjct: 76 -KGEL-----DEIRKIGDYNKKVFEAMGLK--AKYVYGSEFQL-DKDYTLNVYRLALKTT 126
Query: 188 YNKVVGIFGFTG----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQD 242
+ + +V +P +Q S +L + ++Q
Sbjct: 127 LKRARRSMELIAREDENPKVAEVIYPIMQVNTSH------------YLGVDVAVGGMEQR 174
Query: 243 PYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 302
+ R++ P+ K I + L GE GKMS+S N I V DS + I+ KI K
Sbjct: 175 KIHMLARELLPK----KVVCIHNPVLTGLDGE-GKMSSSKGN-FIAVDDSPEEIRAKIKK 228
Query: 303 -YAFSGGQES--VELHRK--LGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGE 357
Y +G E + K L L + P K+ E ++ + +
Sbjct: 229 AYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGD--LTVNSYEELESLFKNKELHPMY 286
Query: 358 VKQRLAKVLTELVE 371
+K +A+ L +++E
Sbjct: 287 LKNAVAEELIKILE 300
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 68.7 bits (169), Expect = 4e-13
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 15/140 (10%)
Query: 240 DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 291
DQ + +TR++A R Y + L P G KMS S N I +
Sbjct: 162 DQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGR--KMSKSYGN-IINLEI 218
Query: 292 SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAG 351
S K ++ I + + + + R N E KY F + E + + +
Sbjct: 219 SEKELEQTILR-MMT---DPARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTA 274
Query: 352 GMLTGEVKQRLAKVLTELVE 371
+ + K+ L K + +
Sbjct: 275 SIGCVDCKKLLLKNMKRKLA 294
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 61.4 bits (150), Expect = 1e-10
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 240 DQDPYFRMTRDVAPRIGYH------KP-ALIESSF--FPALQGETGKMSASDPNSAIYVT 290
DQ + +TR++A R + +P AL+ P + G KMS S N I +
Sbjct: 150 DQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLL 207
Query: 291 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 350
+ ++I KI + + + E I YLS+F +E +K+EY
Sbjct: 208 EPEESIWQKIQH-LPD---DPQRIRLSDPGDPERTILFTYLSYF-APKDLVEALKEEYRK 262
Query: 351 GGMLTGEVKQRLAKVLTELVE 371
G+ T VK+ L L E +
Sbjct: 263 AGVGTYVVKRILFDHLMEALR 283
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 51.4 bits (124), Expect = 2e-07
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 19/141 (13%)
Query: 240 DQDPYFRMTRDVAPRIGYH------KP-ALI--ESSFFPALQGETGKMSASDPNSAIYVT 290
DQ + + RD+A ++ P A + E + G KMS S N I +
Sbjct: 148 DQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGA--KMSKSYQN-TIDIF 204
Query: 291 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 350
S K +K +I+ + + N+ K FL D++ + ++ Y
Sbjct: 205 SSEKTLKKQISS-IVTDSTALEDPKDHENCNI-----FKIAKLFL-DESGQKELQIRYEK 257
Query: 351 GGMLTGEVKQRLAKVLTELVE 371
GG G K L +++ +
Sbjct: 258 GGEGYGHFKIYLNELVNAYFK 278
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 4e-07
Identities = 67/417 (16%), Positives = 125/417 (29%), Gaps = 129/417 (30%)
Query: 20 WEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGR-----PPHVFLRRGVFFAHRDLN 74
V ++ +L ++F ++ L + + P + + F +
Sbjct: 20 LLVPTASFFIASQLQEQF-----NKILPEPTEGFAADDEPTTPAELVGK---FLGY---- 67
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQD----AFKVPLVIQLTDDEK 130
+ E + G + L+L L F YL+ A L L +++
Sbjct: 68 -VSSLVEPSKV-------GQFDQVLNLC-LTEF-ENCYLEGNDIHALAAKL---LQENDT 114
Query: 131 CMWKNLSVEESQRLARENAKDII----------ACGFDVTKTF-IFSDFDYVGG-----A 174
+ K + ++ AR AK A G + IF GG
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF------GGQGNTDD 168
Query: 175 FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF--------PHLFS 226
+++ + + + TY+ +VG + + ++ + A F P
Sbjct: 169 YFEELRDLYQ--TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 227 GKDHLRCLIPCAIDQDP---------YFRMTRDVAPRIGYHKPALIESSFFPALQGETGK 277
KD+L IP + P Y + +G+ P L+G TG
Sbjct: 227 DKDYL-LSIPISC---PLIGVIQLAHYVVTAK----LLGFT-PG----ELRSYLKGATGH 273
Query: 278 ---------MSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPV 328
++ +D + + KAI F G E + P
Sbjct: 274 SQGLVTAVAIAETDSWESFF-VSVRKAI-----TVLFFIGVRCYEAY-----------PN 316
Query: 329 KYLSFFLEDDAELEHIKKEYGAGG---ML--TG----EVKQRLAKVLTELVERHQVA 376
L + +D+ E G ML + +V+ + K + L QV
Sbjct: 317 TSLPPSILEDSL------ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Score = 46.6 bits (110), Expect = 1e-05
Identities = 53/305 (17%), Positives = 89/305 (29%), Gaps = 125/305 (40%)
Query: 95 SSEALHLGH-------LVP---FMFTKYLQDAFKVPLVIQLT----DDEKCMWKNLSVEE 140
S+ L L H LVP F LQ+ F L DDE + E
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE-----PTTPAE 59
Query: 141 SQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI----F- 195
+ + F+ + ++V+ +K +++V+ + F
Sbjct: 60 L--VGK----------------FL---------GYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 196 -GF-TGED-HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252
+ G D H L K+ ++ Y R +A
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTT--------LVKTKELIKN----------YIT-ARIMA 133
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESV 312
R + K + S+ F A + N+ + AI F GGQ
Sbjct: 134 KR-PFDKKS--NSALFRA---------VGEGNAQLV------AI--------F-GGQ--- 163
Query: 313 ELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 372
G + Y EL + + Y L G++ + A+ L+EL+
Sbjct: 164 ------GNTDD------YFE-------ELRDLYQTYHV---LVGDLIKFSAETLSELIRT 201
Query: 373 HQVAR 377
A
Sbjct: 202 TLDAE 206
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 2e-06
Identities = 44/382 (11%), Positives = 88/382 (23%), Gaps = 155/382 (40%)
Query: 32 KLIDKF--GCQRL----DQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEK 85
K + F C+ L + + D + T H L+ E
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTT-------------HISLDHHSMTLTPDE- 302
Query: 86 FYLYTGRGPSSEALHLGHLVPFMFTKYL----QD----AFKV-PLVIQL----TDDEKCM 132
++L KYL QD P + + D
Sbjct: 303 ----------VKSL---------LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 133 WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
W N + + + II +V + + + +
Sbjct: 344 WDNW-----KHVNCDKLTTIIESSLNVLEPAEYRKM-------FDRLS------------ 379
Query: 193 GIFGFTGED-HIGKVSFPPVQAVPSF----PSSFPHLFSGKDHLRCLIPCAIDQDP---- 243
+F HI P + S + K H L+ ++ P
Sbjct: 380 -VFP---PSAHI------PTILLSLIWFDVIKSDVMVVVNKLHKYSLV----EKQPKEST 425
Query: 244 ------YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 297
Y + + H+ ++++ P D + I
Sbjct: 426 ISIPSIYLELKVKLENEYALHR-SIVDHYNIP---------KTFDSD---------DLIP 466
Query: 298 NKINKYAFS---------GGQESVELHRKL--------------GANLEVDIPV------ 328
+++Y +S E + L R + +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 329 --KYLSFFLEDDAELEHIKKEY 348
Y + ++D + E +
Sbjct: 527 LKFYKPYICDNDPKYERLVNAI 548
Score = 39.8 bits (92), Expect = 0.001
Identities = 61/489 (12%), Positives = 137/489 (28%), Gaps = 155/489 (31%)
Query: 25 SGKIDY----------DKLIDKFGCQRLDQSL------------------VDRVQRLTGR 56
+G+ Y D +D F C+ + V RL
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW- 69
Query: 57 PPHVFLRRGVFFAHRDLNDILDA-YEKGEKFYLYTG-----RGPS------SEALHLGHL 104
L + + + ++L Y+ +L + R PS E +
Sbjct: 70 ---TLLSKQEEMVQKFVEEVLRINYK-----FLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 105 VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEES-----------QRLARENAKDII 153
+F KY + ++ ++L + + L ++ +A +
Sbjct: 122 DNQVFAKY--NVSRLQPYLKLR---QAL-LELRPAKNVLIDGVLGSGKTWVALDVCLS-- 173
Query: 154 ACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF----------GFTGEDHI 203
+ V F F+ + + C + V+ + + DH
Sbjct: 174 ---YKVQCKMDF-------KIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH- 219
Query: 204 GKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAID--QDP----YF----RM---TRD 250
S + S + L K + CL+ + Q+ F ++ TR
Sbjct: 220 ---SSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 251 --VAPRIG---YHKPALIESS--FFP----ALQGETGKMSASD-PNSAIYVTDS------ 292
V + +L S P +L + D P +T +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--LTTNPRRLSI 332
Query: 293 -AKAIKNKINKYAFSGGQESVELHRKLGANLE--------------------VDIPVKYL 331
A++I++ + + +L + ++L IP L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 332 SFFLEDD--AELEHIKKEYGAGGMLTGEVKQRLAKV--LTELVERHQVARAAVTDEMVDA 387
S D +++ + + ++ + K+ + + ++ A+ +VD
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 388 FMAVRPLPN 396
+ + +
Sbjct: 453 YNIPKTFDS 461
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 48.0 bits (115), Expect = 2e-06
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 271 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEV 324
LQ T KMS SD N + I + + K++ KI + + ++ +K G NL +
Sbjct: 201 LQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNL-L 259
Query: 325 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 371
DI LS + ++ ++ G + G +K +A ++ ++
Sbjct: 260 DI----LSGV--TGQSIPELEAQF--TGQMYGHLKGAVADAVSGMLS 298
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 47.6 bits (114), Expect = 3e-06
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 30/158 (18%)
Query: 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFP--------------ALQGETGKMS 279
+P DQ + + RD+A R ++ E F +LQ T KMS
Sbjct: 146 QVPVGSDQKQHLELARDIATR--FNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMS 203
Query: 280 ASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEVDIPVKYLSF 333
SD N + I + + K+I KINK A + + + ++ K G NL + + S
Sbjct: 204 KSDDNRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDVENKAGIANL-MGL----YSA 258
Query: 334 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 371
I+ +Y AG + G K+ + + + ++E
Sbjct: 259 A--TGKTFAEIEAQY-AGVEMYGPFKKDVGEAVVAMLE 293
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 47.7 bits (114), Expect = 4e-06
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 271 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 325
L KMS SDPN + I + D K ++ KI A S G + K G NL +
Sbjct: 220 LNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVKFDKENKPGVSNL-LT 277
Query: 326 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 371
I S + +E ++ +Y G GE K LA+V+ ++
Sbjct: 278 I----YSIL--GNTTIEELEAKY--EGKGYGEFKGDLAEVVVNALK 315
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 47.1 bits (113), Expect = 4e-06
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 271 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 325
L T KMS SDPN + I + D AK I+ KI A S G + K G NL ++
Sbjct: 186 LVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIRYDKEAKPGISNL-LN 243
Query: 326 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 371
I S +E ++++Y G G K LA+V+ E +
Sbjct: 244 I----YSTL--SGQSIEELERQY--EGKGYGVFKADLAQVVIETLR 281
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 46.1 bits (110), Expect = 1e-05
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 20/113 (17%)
Query: 271 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 325
L T KMS S N IY+ D + + KI + A S + + G N+ +
Sbjct: 196 LFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQ-ATTDSFNKIRFASKTQPGVTNM-LT 253
Query: 326 IPVKYLSFF-------LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 371
I L + ++ + ++K L + L+
Sbjct: 254 I----LKALLKEPVNQSLTNQLGNDLEAYF--STKSYLDLKNALTEATVNLLV 300
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group
I intron; HET: TYR; 1.95A {Neurospora crassa} PDB:
2rkj_A
Length = 392
Score = 43.9 bits (104), Expect = 5e-05
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG + + + + Y G P++ +LH+GHL+P M ++
Sbjct: 43 RGYVKDTAGTKEHIAELMRTRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLE 95
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; HET: AZY; 1.80A {Escherichia
coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Length = 322
Score = 42.2 bits (100), Expect = 2e-04
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ D + + +G L G P++++LHLGHLVP + K Q A
Sbjct: 13 RGLVAQVTDEEALAERLAQG-PIALVCGFDPTADSLHLGHLVPLLCLKRFQQA 64
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 42.4 bits (100), Expect = 2e-04
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
L+RG + ++L ++G + G P+ LHLGH V + Q+
Sbjct: 15 LKRGAEEIVPE-EELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQEL 68
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase,
protein-substrate complex, ATP-BI ligase, mitochondrion,
nucleotide-binding, protein biosynth; HET: YSA; 2.20A
{Homo sapiens} PDB: 3zxi_A*
Length = 356
Score = 41.9 bits (99), Expect = 3e-04
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
+L ++ D +Y G P++++LH+GHL+ + +LQ A
Sbjct: 33 ELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRA 77
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA
synthetase, tyrrs, ligase, tyrosine, RNA-binding,
ATP-binding; 2.9A {Mycobacterium tuberculosis}
Length = 432
Score = 41.8 bits (99), Expect = 3e-04
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ DL+ + ++G +Y G P++ +LH GHLVP + + Q A
Sbjct: 12 RGLIAQSTDLDTLAAEAQRG-PMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRA 63
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design,
ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP:
c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Length = 420
Score = 41.0 bits (97), Expect = 4e-04
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ + D I D K + LY G P++++LH+GHL+PF+ + Q+
Sbjct: 12 RGLIYQQTDEQGIEDLLNKE-QVTLYCGADPTADSLHIGHLLPFLTLRRFQEH 63
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E*
1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Length = 419
Score = 41.0 bits (97), Expect = 5e-04
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ D + + + + LY G P++++LH+GHL + + Q A
Sbjct: 10 RGLVNQTTDEDGLRKLLNEE-RVTLYCGFDPTADSLHIGHLATILTMRRFQQA 61
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.76
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 13/37 (35%)
Query: 277 KMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVE 313
K+ AS +Y DSA A+ I A ++E
Sbjct: 24 KLQAS---LKLYADDSAPAL--AIK--A------TME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.96
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 23/77 (29%)
Query: 1 MDKNEEKQREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHV 60
+D + +E RE+ K ++++ ++ +Q V++ +
Sbjct: 101 LDAASKVMEQEWREKA--------------KKDLEEWNQRQSEQ--VEKNKINNRIADKA 144
Query: 61 FLRRGVFFAHRDLNDIL 77
F D DI+
Sbjct: 145 FY------QQPD-ADII 154
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 28.9 bits (65), Expect = 2.4
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 281 SDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGAN 321
+ I+ + I + A + E++E R GA+
Sbjct: 80 ESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGAD 120
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel, TIM barrel,
oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP:
c.1.16.3
Length = 349
Score = 28.1 bits (63), Expect = 5.3
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 362 LAKVLTELV--ERHQVARAAVTDEMVDAFMAV 391
A+ + E + A V ++M++AF
Sbjct: 270 KAEQIAEAIGKGDFGTAIGLVDEDMIEAFSIA 301
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad,
strand-helix MO hydrolase; 1.20A {Salmonella
typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Length = 229
Score = 27.7 bits (61), Expect = 6.7
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 15/163 (9%)
Query: 158 DVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK-----VSFPPVQ 212
D ++ VGG ++K ++ + G +IG ++ P ++
Sbjct: 72 DPLAAIEKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPTIR 131
Query: 213 AVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQ 272
P P+ F D L P I+ P+F + + + E +
Sbjct: 132 TTNDMPIVDPNGFDALD----LFPLQIN--PHFTNALPEGHKGETREQRIRELL----VV 181
Query: 273 GETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELH 315
+ + I V++ + + F G+E+V L
Sbjct: 182 APELTVIGLPEGNWIQVSNGQAVLGGPNTTWVFKAGEEAVALE 224
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.1.16.3
Length = 321
Score = 27.3 bits (61), Expect = 8.4
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 16/82 (19%)
Query: 323 EVDIPVKYLSFFLEDDAE--LEHIKKE--YGAGGM---------LTGEVKQRLAKVLTEL 369
++D+ Y +++DA K + A G L + ++ ++L +
Sbjct: 198 DIDVAA-YTCCSIDEDAAAAANAAKIVVAFIAAGSPPPVFERHGLPADTGKKFGELLGK- 255
Query: 370 VERHQVARAAVTDEMVDAFMAV 391
A AV D +++AF V
Sbjct: 256 -GDFGGAIGAVDDALMEAFSVV 276
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.410
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,311,853
Number of extensions: 399649
Number of successful extensions: 1257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1167
Number of HSP's successfully gapped: 56
Length of query: 399
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 303
Effective length of database: 4,021,377
Effective search space: 1218477231
Effective search space used: 1218477231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)