RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015880
(399 letters)
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 358 bits (919), Expect = e-122
Identities = 240/385 (62%), Positives = 306/385 (79%), Gaps = 4/385 (1%)
Query: 14 EQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HR
Sbjct: 1 EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHR 60
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
D+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK
Sbjct: 61 DMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKY 120
Query: 132 MWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYN 189
+WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N
Sbjct: 121 LWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFN 180
Query: 190 KVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTR 249
+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCAIDQDPYFRMTR
Sbjct: 181 QVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTR 240
Query: 250 DVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ 309
DVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK K+NK+AFSGG+
Sbjct: 241 DVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGR 300
Query: 310 ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 369
+++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL L
Sbjct: 301 DTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPL 360
Query: 370 VERHQVARAAVTDEMVDAFMAVRPL 394
+ HQ R VTDE+V FM R L
Sbjct: 361 IAEHQARRKEVTDEIVKEFMTPRKL 385
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus
stearothermophilus, nca 1503 [TaxId: 1422]}
Length = 319
Score = 134 bits (338), Expect = 6e-37
Identities = 48/325 (14%), Positives = 98/325 (30%), Gaps = 26/325 (8%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ D D L E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 10 RGLVNQTTDE-DGLRKLLNEERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIAL 68
Query: 124 QLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY------VGGAFYK 177
+ E A+E + A + F+ + D +
Sbjct: 69 VGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIG 128
Query: 178 NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPV-QAVPSFPSSFPHLFSGKDHLRCLIP 236
+ + K + ++ + + S+ + F
Sbjct: 129 PLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLRLYETEGCRL 188
Query: 237 CAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 296
D + +T + A P + G + I++
Sbjct: 189 QIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDKEKT-- 246
Query: 297 KNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDAELEHIKKEYGAGGMLT 355
S + N + ++YL +F E+E +++E
Sbjct: 247 --------------SPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKR 292
Query: 356 GEVKQRLAKVLTELVERHQVARAAV 380
++ LA+ +T+LV + R A+
Sbjct: 293 -AAQKTLAEEVTKLVHGEEALRQAI 316
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 128 bits (321), Expect = 3e-34
Identities = 52/331 (15%), Positives = 102/331 (30%), Gaps = 37/331 (11%)
Query: 62 LRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA--- 116
+ R + L +IL K + +Y G + + H+ + VP A
Sbjct: 11 ITRNLQEVLGEEKLKEIL----KERELKIYWGTATTGK-PHVAYFVPMSKIADFLKAGCE 65
Query: 117 --FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA 174
+ D+ K W L + + G + K DY
Sbjct: 66 VTILFADLHAYLDNMKAPW-ELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSK 124
Query: 175 FY-----KNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 229
Y + V + + + + + +P +QA+
Sbjct: 125 EYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKV-------- 176
Query: 230 HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 289
IDQ F P +GY K + + P L KMS+S+ S I +
Sbjct: 177 ---DAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLT--GSKMSSSEEESKIDL 231
Query: 290 TDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE------DDAELEH 343
D + +K K+ K G ++ + +++ E
Sbjct: 232 LDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVD 291
Query: 344 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 374
++K++ A + G++K + L +L++ +
Sbjct: 292 LEKDFAAEVVHPGDLKNSVEVALNKLLDPIR 322
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 323
Score = 114 bits (285), Expect = 2e-29
Identities = 45/326 (13%), Positives = 103/326 (31%), Gaps = 25/326 (7%)
Query: 61 FLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA--FK 118
RG+ + D ++ E+ LY G P++++LH+GHL+PF+ + Q+
Sbjct: 8 LKWRGLIYQQTDE-QGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRP 66
Query: 119 VPLVIQLTDDEKCM-WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--F 175
+ L+ T K+ + + I+ F + +
Sbjct: 67 IVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRDW 126
Query: 176 YKNMVKVAKCVTYNKVVGIFGFTG-EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL 234
+ ++ Y K VG+ G + ++ ++ F +
Sbjct: 127 LGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGHLNRELNC 186
Query: 235 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 294
D + +T + + P + GK + A+++
Sbjct: 187 KIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLDAE-- 244
Query: 295 AIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDAELEHIKKEYGAGGM 353
+ S + N + +K+L +F E++ +++
Sbjct: 245 --------------KTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPH 290
Query: 354 LTGEVKQRLAKVLTELVERHQVARAA 379
L E ++ LA+ +T+ + A
Sbjct: 291 LR-EAQKTLAEEVTKFIHGEDALNDA 315
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 107 bits (268), Expect = 6e-27
Identities = 42/322 (13%), Positives = 86/322 (26%), Gaps = 31/322 (9%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
L+RG + ++L ++G + G P+ LHLGH V + Q+ +
Sbjct: 11 LKRGAEEIVPE-EELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVV 69
Query: 122 VIQ---LTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN 178
+I ++ + F+ + +
Sbjct: 70 LIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLE 129
Query: 179 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPC 237
+ + V ++ + + K + +R +
Sbjct: 130 GLTFKEVVRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMG 189
Query: 238 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 297
DQ + R+V G L G ++ I +T+ +A+
Sbjct: 190 GTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMS--KSLDNYIGLTEPPEAMF 247
Query: 298 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGE 357
K+ + + Y D E E I+ AG +
Sbjct: 248 KKLM-------------------RVPDPLLPSYFRLL--TDLEEEEIEALLKAGPV---P 283
Query: 358 VKQRLAKVLTELVERHQVARAA 379
+ LA++LT Q+
Sbjct: 284 AHRVLARLLTAAYALPQIPPRI 305
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 100 bits (248), Expect = 2e-24
Identities = 53/322 (16%), Positives = 105/322 (32%), Gaps = 34/322 (10%)
Query: 62 LRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKV 119
++R + +L ++L EK Y G PS + +HLGH + LQ+A
Sbjct: 7 IKRNTSEIISEEELREVLKKDEKS----AYIGFEPSGK-IHLGHYLQIKKMIDLQNA-GF 60
Query: 120 PLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA-FYKN 178
++I L D + + ++E +++ N K A G +
Sbjct: 61 DIIILLADLHAYLNQKGELDEIRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYR 120
Query: 179 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL-IPC 237
+ + + + E+ P + +L
Sbjct: 121 LALKTTLKRARRSMELIAREDENPKVAEVIYP-----------IMQVNDIHYLGVDVAVG 169
Query: 238 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 297
++Q + R+ + K I + L GE +S + I V DS + I+
Sbjct: 170 GMEQRKIHMLARE----LLPKKVVCIHNPVLTGLDGE--GKMSSSKGNFIAVDDSPEEIR 223
Query: 298 NKINKYAFSGGQESVELHRK-----LGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGG 352
KI K G + L L + P K+ E ++ +
Sbjct: 224 AKIKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDL--TVNSYEELESLFKNKE 281
Query: 353 MLTGEVKQRLAKVLTELVERHQ 374
+ ++K +A+ L +++E +
Sbjct: 282 LHPMDLKNAVAEELIKILEPIR 303
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 81.7 bits (201), Expect = 6e-18
Identities = 50/294 (17%), Positives = 102/294 (34%), Gaps = 20/294 (6%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARE 147
+++G PS + +G+ + ++++ + + D + E ++ R
Sbjct: 4 IFSGIQPSGV-ITIGNYIG-ALRQFVELQHEYNCYFCIVDQHA-ITVWQDPHELRQNIRR 60
Query: 148 NAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY----NKVVGIFGFTGEDHI 203
A +A G D T+ +F + A M++ + +
Sbjct: 61 LAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSA 120
Query: 204 GKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALI 263
G +++PP+ A + + G+D + + +D R + + +
Sbjct: 121 GLLTYPPLMAADILLYNTDIVPVGEDQKQHIELT---RDLAERFNKRYGELFTIPEARIP 177
Query: 264 -ESSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGA 320
+ +L T KMS SDPN + I + D AK I+ KI
Sbjct: 178 KVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEA--- 234
Query: 321 NLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 374
+ + S +E ++++Y G G K LA+V+ E + Q
Sbjct: 235 KPGISNLLNIYSTL--SGQSIEELERQYEGKGY--GVFKADLAQVVIETLRPIQ 284
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 29.5 bits (65), Expect = 0.66
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAF 117
L+ + E F L+ G ++ LH+GH K L+D
Sbjct: 40 ALEKNKGNETFILHDGPPYANGNLHMGHA----LNKILKDFI 77
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 28.4 bits (62), Expect = 1.2
Identities = 7/58 (12%), Positives = 14/58 (24%)
Query: 28 IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEK 85
+ I + V+ + R + L DI+ + K
Sbjct: 132 LSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIVTCVQSSRK 189
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus
aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]}
Length = 96
Score = 25.8 bits (57), Expect = 3.4
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 353 MLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 388
MLTG+ K+ L + + Q+ + + + M+
Sbjct: 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQI 36
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 27.2 bits (59), Expect = 3.7
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAF 117
F ++ + +LH+GH LQDA
Sbjct: 31 SGKPPFVIFMPPPNVTGSLHMGHA----LDNSLQDAL 63
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 27.3 bits (59), Expect = 4.1
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAF 117
K Y+ S LH+GH + + D
Sbjct: 30 GGRGKQYVLVMFPYPSGDLHMGH----LKNYTMGDVL 62
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 26.3 bits (57), Expect = 5.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 356 GEVKQRLAKVLTELVE 371
G+V L+ + ELVE
Sbjct: 1 GQVVLSLSTAVKELVE 16
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain
{Thermotoga maritima [TaxId: 2336]}
Length = 105
Score = 25.6 bits (56), Expect = 5.3
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 336 EDDAELEHIKKEY----GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM-A 390
ED + + G G + +L L ++++ + + +T +++D
Sbjct: 33 EDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITSDLLDKIFAG 92
Query: 391 VRPLPNMFD 399
V + M D
Sbjct: 93 VDMITRMVD 101
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 24.7 bits (54), Expect = 6.0
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 352 GMLTGEVKQRLAKVLTELVERH 373
L + K LA +T+++ RH
Sbjct: 10 RELDEQQKAALAADITDVIIRH 31
>d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497
{Methanosarcina mazei [TaxId: 2209]}
Length = 208
Score = 26.1 bits (57), Expect = 7.5
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 356 GEVKQRLAKVLTELVERHQVARAAVTD 382
K RL+ VL+ ER + +
Sbjct: 10 AGAKSRLSPVLSL-QEREEFVELMLNQ 35
>d1j3wa_ d.110.7.1 (A:) Giding protein MglB {Thermus thermophilus
[TaxId: 274]}
Length = 134
Score = 25.6 bits (56), Expect = 7.6
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 354 LTGEVKQRLAKVLTELVERHQVARAAVTD 382
L G +R +VL E + A + D
Sbjct: 3 LYGAPYERAVEVLEETLRETGARYALLID 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.410
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,521,530
Number of extensions: 73992
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 22
Length of query: 399
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,213,086
Effective search space: 378482832
Effective search space used: 378482832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)