Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>015881
MATTSLLPKSTSPFLSNPLSSLPSTHFIKPSPLFNPPDNHSLLITTKRLSFQTHAKKKNP
WLDPFDDGEDPDMQYGSLFADGKQDEDPRPPDDPNNPYGFLKFPMGFNPEIASLPLKIRG
DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD
LDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAG
AGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAE
KYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHE
KEREGVEDVVGDDASIVFITTPGQVRMSSYTIFNIAEGK

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  015881
        (399 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2200452 - symbol:PnsB1 "Photosynthetic NDH  su...  1380  4.3e-141  1


>TAIR|locus:2200452 [details] [associations]
            symbol:PnsB1 "Photosynthetic NDH  subcomplex B 1"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009773 "photosynthetic electron transport in
            photosystem I" evidence=IMP] [GO:0010598 "NAD(P)H dehydrogenase
            complex (plastoquinone)" evidence=IMP;IDA] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0006098 "pentose-phosphate shunt"
            evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
            [GO:0015979 "photosynthesis" evidence=RCA] [GO:0016117 "carotenoid
            biosynthetic process" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009535 EMBL:AC010924
            UniGene:At.26234 GO:GO:0009773 GO:GO:0010598 eggNOG:COG0859
            EMBL:AY057703 EMBL:AY084966 EMBL:AY124875 IPI:IPI00538067
            PIR:D86294 RefSeq:NP_563986.1 ProteinModelPortal:Q9S9N6
            STRING:Q9S9N6 PaxDb:Q9S9N6 PRIDE:Q9S9N6 EnsemblPlants:AT1G15980.1
            GeneID:838168 KEGG:ath:AT1G15980 TAIR:At1g15980
            HOGENOM:HOG000030133 InParanoid:Q9S9N6 OMA:NSLADWG PhylomeDB:Q9S9N6
            ProtClustDB:CLSN2687821 Genevestigator:Q9S9N6 Uniprot:Q9S9N6
        Length = 461

 Score = 1380 (490.8 bits), Expect = 4.3e-141, P = 4.3e-141
 Identities = 258/348 (74%), Positives = 293/348 (84%)

Query:    39 NHSLLITTKRLSFQTHAKKKN-PWLDPFDDGEDPDMQYGSLFADGKQXXXXXXXXXXXXX 97
             N    +T++      + KKKN PWLDPFD GEDPD +YGSLFADGKQ             
Sbjct:    31 NFQTRLTSRSSDVSVNLKKKNNPWLDPFDSGEDPDNEYGSLFADGKQDEDPRPPDNPDNP 90

Query:    98 YGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDV 157
             YGFLKFP G+  E+ASLPLKIRGDVRRCCC+ISGGVYENLLFFP IQL+KDRYPGV +D+
Sbjct:    91 YGFLKFPKGYTVELASLPLKIRGDVRRCCCVISGGVYENLLFFPTIQLIKDRYPGVQVDI 150

Query:   158 IASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHA 217
             + + RGKQT+ELNKNVRWANVYD DD WPEPAEYTD++G++K RYYDMVLSTKLAGLGHA
Sbjct:   151 LTTERGKQTYELNKNVRWANVYDPDDHWPEPAEYTDMIGLLKGRYYDMVLSTKLAGLGHA 210

Query:   218 AFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRS 277
             AFLFMTTARDRVSYIYPNVN+AGAGL+LSETFTAE+ NLSE GY+MY QM DWLGRPFRS
Sbjct:   211 AFLFMTTARDRVSYIYPNVNSAGAGLMLSETFTAENTNLSELGYSMYTQMEDWLGRPFRS 270

Query:   278 VPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLP 337
             VPR P+ PLRVSISR++KEVVA KY+NAGA  GK+IVIHGIESDSKASMQS+GD DSLL 
Sbjct:   271 VPRTPLLPLRVSISRKVKEVVAAKYRNAGAVTGKFIVIHGIESDSKASMQSKGDADSLLS 330

Query:   338 IQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQV 385
             ++ WA+I  G+R F+P+FVIPHEKERE VED VGDD SIVFITTPGQ+
Sbjct:   331 LEKWAKIIKGVRGFKPVFVIPHEKERENVEDFVGDDTSIVFITTPGQL 378


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      399       371   0.00086  117 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  241 KB (2130 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.29u 0.08s 28.37t   Elapsed:  00:00:04
  Total cpu time:  28.29u 0.08s 28.37t   Elapsed:  00:00:04
  Start:  Tue May 21 02:10:36 2013   End:  Tue May 21 02:10:40 2013

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