BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015881
         (399 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PPL|A Chain A, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
           Cgl0240) From Corynebacterium Glutamicum Atcc 13032
           Kitasato At 1.25 A Resolution
 pdb|3PPL|B Chain B, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
           Cgl0240) From Corynebacterium Glutamicum Atcc 13032
           Kitasato At 1.25 A Resolution
          Length = 427

 Score = 30.0 bits (66), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 153 VLIDVIASARGKQTFELNKNVRWANVY---DLDDDWPEPAEYTDILGVMK-----NRYYD 204
           V  DV       +T   +  V W N Y    L D++PE     DI+G+ +     NR++ 
Sbjct: 198 VTEDVAKRLSAXETAAPDFRVVWDNAYAVHTLTDEFPE---VIDIVGLGEAAGNPNRFWA 254

Query: 205 MVLSTKLAGLGHAAFLFMTTARDRVSY 231
              ++K+   G     F+T+A +R  Y
Sbjct: 255 FTSTSKITLAGAGVSFFLTSAENRKWY 281


>pdb|3JSA|A Chain A, Homoserine Dehydrogenase From Thermoplasma Volcanium
           Complexed With Nad
          Length = 328

 Score = 28.5 bits (62), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 164 KQTFELNKNVRWANVYDLDDDWPEPAEY 191
           K+TFE  K+V  AN   L + WPE  EY
Sbjct: 105 KETFENGKDVVTANKSGLANFWPEIXEY 132


>pdb|3C8M|A Chain A, Crystal Structure Of Homoserine Dehydrogenase From
           Thermoplasma Volcanium
          Length = 331

 Score = 28.5 bits (62), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 164 KQTFELNKNVRWANVYDLDDDWPEPAEY 191
           K+TFE  K+V  AN   L + WPE  EY
Sbjct: 108 KETFENGKDVVTANKSGLANFWPEIXEY 135


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,565,148
Number of Sequences: 62578
Number of extensions: 476103
Number of successful extensions: 783
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 781
Number of HSP's gapped (non-prelim): 5
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)