BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015881
(399 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WXG9|GPR98_HUMAN G-protein coupled receptor 98 OS=Homo sapiens GN=GPR98 PE=1 SV=2
Length = 6306
Score = 38.5 bits (88), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 95 NNPYGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVL 154
+N G F PEIA G C + G + + F I ++ L
Sbjct: 1569 DNANGLFGFTGACIPEIAE-----EGSTISCVVERTRGALDYVHVFYTISQIETDGINYL 1623
Query: 155 IDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEY 191
+D A+A G TF + N+Y LDDD PE EY
Sbjct: 1624 VDDFANASGTITFLPWQRSEVLNIYVLDDDIPELNEY 1660
>sp|A5G9V4|YIDC_GEOUR Membrane protein insertase YidC OS=Geobacter uraniireducens (strain
Rf4) GN=yidC PE=3 SV=1
Length = 528
Score = 35.8 bits (81), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 294 LKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLR 349
LK++V ++YK G+ +V+ E+ K S+ + G + + P V+ I+NGL+
Sbjct: 86 LKKLVLKRYKETSGPGGREVVLVNEEAAEKFSLLTEGKSFGIEPTVVYNSISNGLK 141
>sp|A6T2Y3|CCA_JANMA Multifunctional CCA protein OS=Janthinobacterium sp. (strain
Marseille) GN=cca PE=3 SV=1
Length = 416
Score = 35.0 bits (79), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 326 MQSRGDTDSLLPIQVWAEIANGLREFRP 353
M + G+ D+L+P +VW E+A GL E RP
Sbjct: 161 MVTAGEVDALVPERVWQELARGLMEVRP 188
>sp|Q8Y395|CCA_RALSO Multifunctional CCA protein OS=Ralstonia solanacearum (strain
GMI1000) GN=cca PE=3 SV=1
Length = 429
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 318 IESDSKASMQ---SRGDTDSLLPIQVWAEIANGLREFRP--LFVI 357
+ +++A MQ G+ D+L+P +VW E+A GL E RP LF +
Sbjct: 175 VAPETRALMQRMAEAGEVDALVPERVWQELARGLLEARPSRLFAV 219
>sp|B2AGH1|CCA_CUPTR Multifunctional CCA protein OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=cca PE=3 SV=1
Length = 415
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 325 SMQSRGDTDSLLPIQVWAEIANGLREFRP 353
M + G+ D+L+P +VW E+A GL E RP
Sbjct: 166 EMVAAGEVDALVPERVWQELARGLMEARP 194
>sp|Q476S9|CCA_CUPPJ Multifunctional CCA protein OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=cca PE=3 SV=1
Length = 415
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 326 MQSRGDTDSLLPIQVWAEIANGLREFRP 353
M G+ D+L+P +VW E+A GL E RP
Sbjct: 167 MVDAGEVDALVPERVWQELARGLMEARP 194
>sp|Q39C44|CCA_BURS3 Multifunctional CCA protein OS=Burkholderia sp. (strain 383) GN=cca
PE=3 SV=1
Length = 413
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 326 MQSRGDTDSLLPIQVWAEIANGLREFRP--LFVIPHE 360
M G+ D+L+P +VW EIA GL E +P +F + E
Sbjct: 167 MVDAGEVDALVPERVWQEIARGLMEAKPSRMFAVLRE 203
>sp|Q1GZ11|CCA_METFK Multifunctional CCA protein OS=Methylobacillus flagellatus (strain
KT / ATCC 51484 / DSM 6875) GN=cca PE=3 SV=1
Length = 411
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 326 MQSRGDTDSLLPIQVWAEIANGLREFRP 353
M G+ D+L+P +VW E+A GL E RP
Sbjct: 161 MVEDGEVDALVPERVWQELAKGLMEQRP 188
>sp|Q63YC3|CCA_BURPS Multifunctional CCA protein OS=Burkholderia pseudomallei (strain
K96243) GN=cca PE=3 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 325 SMQSRGDTDSLLPIQVWAEIANGLREFRP--LFVIPHE 360
+M G+ D+L+P +VW E+A GL E +P +F + E
Sbjct: 166 AMVDAGEVDALVPERVWQELARGLMEAKPSRMFAVLRE 203
>sp|A3NQD4|CCA_BURP0 Multifunctional CCA protein OS=Burkholderia pseudomallei (strain
1106a) GN=cca PE=3 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 325 SMQSRGDTDSLLPIQVWAEIANGLREFRP--LFVIPHE 360
+M G+ D+L+P +VW E+A GL E +P +F + E
Sbjct: 166 AMVDAGEVDALVPERVWQELARGLMEAKPSRMFAVLRE 203
>sp|A0KBA2|CCA_BURCH Multifunctional CCA protein OS=Burkholderia cenocepacia (strain
HI2424) GN=cca PE=3 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 326 MQSRGDTDSLLPIQVWAEIANGLREFRP 353
M G+ D+L+P +VW EIA GL E +P
Sbjct: 167 MVDAGEVDALVPERVWQEIARGLMEAKP 194
>sp|Q1BST9|CCA_BURCA Multifunctional CCA protein OS=Burkholderia cenocepacia (strain AU
1054) GN=cca PE=3 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 326 MQSRGDTDSLLPIQVWAEIANGLREFRP 353
M G+ D+L+P +VW EIA GL E +P
Sbjct: 167 MVDAGEVDALVPERVWQEIARGLMEAKP 194
>sp|A1V7S8|CCA_BURMS Multifunctional CCA protein OS=Burkholderia mallei (strain SAVP1)
GN=cca PE=3 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 325 SMQSRGDTDSLLPIQVWAEIANGLREFRP--LFVIPHE 360
+M G+ D+L+P +VW E+A GL E +P +F + E
Sbjct: 166 AMVDAGEVDALVPERVWQELARGLMEAKPSRMFAVLRE 203
>sp|Q62EU1|CCA_BURMA Multifunctional CCA protein OS=Burkholderia mallei (strain ATCC
23344) GN=cca PE=3 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 325 SMQSRGDTDSLLPIQVWAEIANGLREFRP--LFVIPHE 360
+M G+ D+L+P +VW E+A GL E +P +F + E
Sbjct: 166 AMVDAGEVDALVPERVWQELARGLMEAKPSRMFAVLRE 203
>sp|A2S800|CCA_BURM9 Multifunctional CCA protein OS=Burkholderia mallei (strain NCTC
10229) GN=cca PE=3 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 325 SMQSRGDTDSLLPIQVWAEIANGLREFRP--LFVIPHE 360
+M G+ D+L+P +VW E+A GL E +P +F + E
Sbjct: 166 AMVDAGEVDALVPERVWQELARGLMEAKPSRMFAVLRE 203
>sp|A3MRJ1|CCA_BURM7 Multifunctional CCA protein OS=Burkholderia mallei (strain NCTC
10247) GN=cca PE=3 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 325 SMQSRGDTDSLLPIQVWAEIANGLREFRP--LFVIPHE 360
+M G+ D+L+P +VW E+A GL E +P +F + E
Sbjct: 166 AMVDAGEVDALVPERVWQELARGLMEAKPSRMFAVLRE 203
>sp|B4E8K1|CCA_BURCJ Multifunctional CCA protein OS=Burkholderia cepacia (strain J2315 /
LMG 16656) GN=cca PE=3 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 326 MQSRGDTDSLLPIQVWAEIANGLREFRP 353
M G+ D+L+P +VW EIA GL E +P
Sbjct: 167 MVDAGEVDALVPERVWQEIARGLMEAKP 194
>sp|A3N4P2|CCA_BURP6 Multifunctional CCA protein OS=Burkholderia pseudomallei (strain
668) GN=cca PE=3 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 325 SMQSRGDTDSLLPIQVWAEIANGLREFRP--LFVIPHE 360
+M G+ D+L+P +VW E+A GL E +P +F + E
Sbjct: 166 AMVDAGEVDALVPERVWQELARGLMEAKPSRMFAVLRE 203
>sp|B1JZZ7|CCA_BURCC Multifunctional CCA protein OS=Burkholderia cenocepacia (strain
MC0-3) GN=cca PE=3 SV=1
Length = 413
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 326 MQSRGDTDSLLPIQVWAEIANGLREFRP 353
M G+ D+L+P +VW EIA GL E +P
Sbjct: 167 MVDAGEIDALVPERVWQEIARGLMEAKP 194
>sp|Q0KF16|CCA_CUPNH Multifunctional CCA protein OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=cca PE=3 SV=1
Length = 411
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 325 SMQSRGDTDSLLPIQVWAEIANGLREFRP 353
M + G+ D+L+P +VW E+A GL E +P
Sbjct: 166 EMVAAGEVDALVPERVWQELARGLMEAKP 194
>sp|Q82U82|CCA_NITEU Multifunctional CCA protein OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=cca PE=3 SV=1
Length = 412
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 330 GDTDSLLPIQVWAEIANGLREFRP 353
G+T++L+P +VW EIA+GL E P
Sbjct: 164 GETEALVPERVWQEIAHGLMESHP 187
>sp|C5CNM3|CCA_VARPS Multifunctional CCA protein OS=Variovorax paradoxus (strain S110)
GN=cca PE=3 SV=1
Length = 419
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 325 SMQSRGDTDSLLPIQVWAEIANGLREFRP 353
M G+ D+L+P +VW E++ GL E RP
Sbjct: 172 EMVQAGEADALVPERVWQELSRGLMETRP 200
>sp|A4G969|CCA_HERAR Multifunctional CCA protein OS=Herminiimonas arsenicoxydans GN=cca
PE=3 SV=1
Length = 414
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 318 IESDSKASMQS---RGDTDSLLPIQVWAEIANGLREFRP 353
+ +++ A MQ+ G+ D+L+P + W E+A GL E +P
Sbjct: 150 VAAETNALMQAMVAAGEVDALVPERTWQELARGLMEVQP 188
>sp|B8GP39|PUR7_THISH Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=purC PE=3
SV=1
Length = 296
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 11 TSPFLSNPLSSLPSTHFIKPSPLFNPPDNHSLLITTKRLS 50
+ P L + L+SLP H K L+ D+H L++TT R+S
Sbjct: 2 SQPLLQSHLTSLPLIHRGKVRDLYAVGDDHLLIVTTDRVS 41
>sp|A9ABP3|CCA_BURM1 Multifunctional CCA protein OS=Burkholderia multivorans (strain
ATCC 17616 / 249) GN=cca PE=3 SV=1
Length = 413
Score = 32.3 bits (72), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 326 MQSRGDTDSLLPIQVWAEIANGLREFRP 353
M G+ D+L+P +VW E+A GL E +P
Sbjct: 167 MVDAGEVDALVPERVWQELARGLMEAKP 194
>sp|B1Y634|CCA_LEPCP Multifunctional CCA protein OS=Leptothrix cholodnii (strain ATCC
51168 / LMG 8142 / SP-6) GN=cca PE=3 SV=1
Length = 419
Score = 32.3 bits (72), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 326 MQSRGDTDSLLPIQVWAEIANGLREFRP 353
M G+ D+L+P +VW E++ GL E RP
Sbjct: 161 MVEAGEVDALVPERVWQELSRGLMEARP 188
>sp|A4JIK4|CCA_BURVG Multifunctional CCA protein OS=Burkholderia vietnamiensis (strain
G4 / LMG 22486) GN=cca PE=3 SV=1
Length = 413
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 326 MQSRGDTDSLLPIQVWAEIANGLREFRP 353
M G+ D+L+P +VW EIA GL E P
Sbjct: 167 MVDAGEADALVPERVWQEIARGLMEATP 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,323,872
Number of Sequences: 539616
Number of extensions: 7446727
Number of successful extensions: 16609
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16576
Number of HSP's gapped (non-prelim): 34
length of query: 399
length of database: 191,569,459
effective HSP length: 120
effective length of query: 279
effective length of database: 126,815,539
effective search space: 35381535381
effective search space used: 35381535381
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)