Query 015881
Match_columns 399
No_of_seqs 187 out of 1042
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 04:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tov_A Glycosyl transferase fa 100.0 2.8E-42 9.6E-47 343.5 26.9 246 121-390 7-255 (349)
2 2gt1_A Lipopolysaccharide hept 100.0 7.6E-37 2.6E-41 298.6 21.5 237 123-390 1-247 (326)
3 1psw_A ADP-heptose LPS heptosy 100.0 1.7E-35 6E-40 290.0 25.0 248 123-390 1-255 (348)
4 3dzc_A UDP-N-acetylglucosamine 96.0 0.15 5.2E-06 50.5 15.6 104 120-227 23-138 (396)
5 3otg_A CALG1; calicheamicin, T 95.9 0.05 1.7E-06 52.9 11.4 105 120-229 18-156 (412)
6 4fzr_A SSFS6; structural genom 95.0 0.19 6.5E-06 48.8 12.1 104 120-228 13-148 (398)
7 3okp_A GDP-mannose-dependent a 94.9 2.6 8.9E-05 39.8 21.3 104 121-229 3-114 (394)
8 3rsc_A CALG2; TDP, enediyne, s 94.6 0.35 1.2E-05 47.0 12.9 104 120-228 18-144 (415)
9 2iyf_A OLED, oleandomycin glyc 94.6 0.37 1.3E-05 47.2 13.0 103 122-229 7-130 (430)
10 3tsa_A SPNG, NDP-rhamnosyltran 94.2 0.25 8.6E-06 47.6 10.7 100 123-227 2-138 (391)
11 3oti_A CALG3; calicheamicin, T 94.2 0.27 9.2E-06 47.8 10.9 102 121-228 19-155 (398)
12 3ia7_A CALG4; glycosysltransfe 94.0 0.37 1.3E-05 46.3 11.4 104 122-231 4-130 (402)
13 1f0k_A MURG, UDP-N-acetylgluco 93.3 0.82 2.8E-05 43.3 12.2 105 123-231 7-126 (364)
14 2yjn_A ERYCIII, glycosyltransf 92.8 1 3.6E-05 44.4 12.6 106 119-229 17-170 (441)
15 2p6p_A Glycosyl transferase; X 92.4 0.7 2.4E-05 44.4 10.5 101 123-228 1-132 (384)
16 4amg_A Snogd; transferase, pol 92.4 0.62 2.1E-05 44.8 10.1 103 121-228 21-153 (400)
17 1vgv_A UDP-N-acetylglucosamine 92.3 0.54 1.8E-05 44.9 9.5 104 123-228 1-114 (384)
18 1v4v_A UDP-N-acetylglucosamine 92.1 0.79 2.7E-05 43.8 10.4 104 121-227 4-118 (376)
19 2iya_A OLEI, oleandomycin glyc 92.0 2.2 7.4E-05 41.6 13.7 105 122-232 12-137 (424)
20 1rrv_A Glycosyltransferase GTF 89.6 1.3 4.3E-05 43.4 9.4 101 123-228 1-122 (416)
21 1iir_A Glycosyltransferase GTF 88.1 3.2 0.00011 40.5 11.2 102 123-229 1-122 (415)
22 3c48_A Predicted glycosyltrans 87.2 2.7 9.3E-05 40.7 10.0 42 120-163 18-70 (438)
23 3s2u_A UDP-N-acetylglucosamine 86.2 7.9 0.00027 37.4 12.7 103 123-229 3-120 (365)
24 3beo_A UDP-N-acetylglucosamine 85.1 2.6 8.8E-05 39.8 8.4 104 122-228 8-123 (375)
25 3oy2_A Glycosyltransferase B73 84.7 8.6 0.0003 36.8 12.1 99 123-226 1-105 (413)
26 3ot5_A UDP-N-acetylglucosamine 84.3 4.9 0.00017 39.7 10.2 115 109-227 11-141 (403)
27 3h4t_A Glycosyltransferase GTF 84.3 5.2 0.00018 39.0 10.4 102 123-229 1-121 (404)
28 4hwg_A UDP-N-acetylglucosamine 83.4 3.8 0.00013 40.4 9.0 96 122-226 9-119 (385)
29 2gek_A Phosphatidylinositol ma 79.4 9.2 0.00031 36.2 9.9 109 120-232 18-138 (406)
30 2ejb_A Probable aromatic acid 70.0 4.9 0.00017 36.0 4.9 44 123-169 2-45 (189)
31 3fro_A GLGA glycogen synthase; 65.7 90 0.0031 29.3 21.6 71 300-385 241-319 (439)
32 2fyi_A HTH-type transcriptiona 63.8 27 0.00092 29.9 8.5 32 129-161 20-51 (228)
33 3l0o_A Transcription terminati 62.8 30 0.001 34.9 9.3 98 122-221 175-279 (427)
34 2jjm_A Glycosyl transferase, g 62.2 92 0.0031 29.2 12.6 72 137-211 31-108 (394)
35 2iuy_A Avigt4, glycosyltransfe 61.5 27 0.00094 32.2 8.5 76 122-212 3-94 (342)
36 2xci_A KDO-transferase, 3-deox 54.4 33 0.0011 33.0 8.0 88 123-224 41-132 (374)
37 3qvl_A Putative hydantoin race 54.0 8.6 0.00029 35.6 3.5 96 123-232 2-98 (245)
38 2pq6_A UDP-glucuronosyl/UDP-gl 53.5 1.4E+02 0.0048 29.6 12.8 106 122-232 8-146 (482)
39 3ho7_A OXYR; beta-alpha-barrel 52.8 62 0.0021 27.2 8.8 36 125-161 13-48 (232)
40 2iw1_A Lipopolysaccharide core 49.3 30 0.001 32.1 6.5 82 123-211 1-89 (374)
41 2ql3_A Probable transcriptiona 46.9 52 0.0018 27.3 7.2 31 130-161 12-42 (209)
42 3oxn_A Putative transcriptiona 45.6 83 0.0028 26.8 8.5 50 129-180 25-76 (241)
43 2r60_A Glycosyl transferase, g 45.5 96 0.0033 30.3 9.9 107 122-231 7-150 (499)
44 3onm_A Transcriptional regulat 41.5 54 0.0019 28.1 6.6 32 129-161 33-64 (238)
45 3ice_A Transcription terminati 41.5 1.2E+02 0.004 30.5 9.6 96 122-219 174-276 (422)
46 3r6w_A FMN-dependent NADH-azor 41.0 27 0.00093 30.7 4.5 38 122-159 1-42 (212)
47 4fak_A Ribosomal RNA large sub 40.7 1.8E+02 0.0062 25.2 11.0 110 120-232 2-132 (163)
48 4fak_A Ribosomal RNA large sub 40.3 23 0.0008 31.0 3.8 50 334-388 85-137 (163)
49 3vue_A GBSS-I, granule-bound s 40.0 24 0.00082 36.1 4.6 37 120-160 7-51 (536)
50 1i6a_A OXYR, hydrogen peroxide 39.7 1.3E+02 0.0044 25.2 8.7 32 129-161 11-42 (219)
51 1mvl_A PPC decarboxylase athal 38.6 30 0.001 31.4 4.5 45 121-169 18-62 (209)
52 2y7p_A LYSR-type regulatory pr 38.3 89 0.003 26.5 7.5 24 137-160 21-44 (218)
53 1g63_A Epidermin modifying enz 37.9 21 0.00073 31.5 3.3 44 122-168 2-45 (181)
54 3auf_A Glycinamide ribonucleot 36.3 1.3E+02 0.0044 27.3 8.5 98 119-221 19-121 (229)
55 1oft_A SULA, hypothetical prot 35.8 1.3E+02 0.0045 26.1 8.0 79 127-208 50-131 (161)
56 3jv9_A OXYR, transcriptional r 35.7 80 0.0027 26.1 6.6 31 130-161 11-41 (219)
57 2qsx_A Putative transcriptiona 35.2 55 0.0019 27.9 5.6 54 124-180 20-73 (218)
58 1ofu_X SULA, hypothetical prot 35.2 1.1E+02 0.0038 24.9 7.1 80 127-209 8-90 (119)
59 3hhf_B Transcriptional regulat 35.1 61 0.0021 26.7 5.7 48 130-180 14-61 (213)
60 4dim_A Phosphoribosylglycinami 34.9 2.1E+02 0.0071 27.2 10.3 71 122-209 7-78 (403)
61 2hxr_A HTH-type transcriptiona 34.7 69 0.0024 27.2 6.2 43 137-180 43-87 (238)
62 1sbz_A Probable aromatic acid 34.5 32 0.0011 30.9 3.9 44 123-168 1-44 (197)
63 3kos_A HTH-type transcriptiona 34.2 49 0.0017 27.7 5.0 50 129-181 18-67 (219)
64 1qzu_A Hypothetical protein MD 33.3 32 0.0011 31.1 3.7 47 122-170 19-65 (206)
65 2acv_A Triterpene UDP-glucosyl 32.7 34 0.0012 34.2 4.2 106 122-229 9-140 (463)
66 2pn1_A Carbamoylphosphate synt 32.6 2.1E+02 0.0071 26.3 9.6 77 122-210 4-80 (331)
67 2npb_A Selenoprotein W; struct 32.2 23 0.00078 28.2 2.3 52 137-190 17-71 (96)
68 3fzv_A Probable transcriptiona 32.1 1.7E+02 0.0058 25.9 8.6 34 127-161 99-132 (306)
69 3qjg_A Epidermin biosynthesis 31.5 48 0.0016 29.1 4.5 43 123-168 6-48 (175)
70 3av3_A Phosphoribosylglycinami 31.3 2E+02 0.0067 25.6 8.8 95 122-221 3-102 (212)
71 3mz1_A Putative transcriptiona 31.2 1.1E+02 0.0037 26.8 7.0 50 129-181 94-143 (300)
72 3p0r_A Azoreductase; structura 31.2 74 0.0025 28.1 5.8 39 121-159 3-46 (211)
73 3abi_A Putative uncharacterize 31.1 1.2E+02 0.0041 29.0 7.7 76 118-212 12-87 (365)
74 1to0_A Hypothetical UPF0247 pr 30.4 54 0.0019 28.7 4.6 50 334-388 81-133 (167)
75 2c1x_A UDP-glucose flavonoid 3 30.2 3.8E+02 0.013 26.3 11.5 41 122-162 7-47 (456)
76 2ck3_D ATP synthase subunit be 30.0 88 0.003 32.0 6.7 95 122-218 153-267 (482)
77 1ns5_A Hypothetical protein YB 29.9 41 0.0014 29.1 3.7 50 334-388 77-128 (155)
78 3zqu_A Probable aromatic acid 29.8 56 0.0019 29.5 4.7 44 122-168 4-47 (209)
79 3gbv_A Putative LACI-family tr 28.8 2.1E+02 0.0073 25.2 8.7 58 122-179 135-207 (304)
80 3mcu_A Dipicolinate synthase, 28.7 51 0.0018 29.8 4.3 44 122-168 5-49 (207)
81 2vsy_A XCC0866; transferase, g 28.1 2.9E+02 0.0099 27.3 10.3 83 120-212 203-292 (568)
82 1ixc_A CBNR, LYSR-type regulat 27.2 1.4E+02 0.0048 26.3 7.0 37 124-161 92-128 (294)
83 1kjn_A MTH0777; hypotethical p 27.0 2.5E+02 0.0086 24.2 8.0 79 120-212 4-88 (157)
84 3u7i_A FMN-dependent NADH-azor 26.7 1.1E+02 0.0036 27.5 6.1 40 120-159 2-48 (223)
85 2h9b_A HTH-type transcriptiona 25.3 1.2E+02 0.0042 27.3 6.4 32 129-161 96-127 (312)
86 3u7q_B Nitrogenase molybdenum- 25.2 1.7E+02 0.0057 30.0 7.9 93 122-232 364-472 (523)
87 1kjq_A GART 2, phosphoribosylg 25.1 3.1E+02 0.011 25.8 9.5 76 120-212 9-84 (391)
88 3sxp_A ADP-L-glycero-D-mannohe 24.5 4E+02 0.014 24.6 10.0 77 121-211 9-99 (362)
89 1twy_A ABC transporter, peripl 24.2 2.2E+02 0.0077 24.6 7.8 54 124-180 29-84 (290)
90 1fx0_B ATP synthase beta chain 23.7 1.1E+02 0.0039 31.3 6.2 109 123-232 166-299 (498)
91 2h98_A HTH-type transcriptiona 23.3 1.5E+02 0.0053 26.8 6.7 36 125-161 92-127 (313)
92 1z6n_A Hypothetical protein PA 23.3 1.9E+02 0.0064 24.6 6.8 58 124-181 57-119 (167)
93 2x6q_A Trehalose-synthase TRET 23.1 16 0.00054 35.0 -0.3 43 121-165 39-83 (416)
94 1p3y_1 MRSD protein; flavoprot 22.9 45 0.0015 29.7 2.7 43 122-167 8-50 (194)
95 3lqk_A Dipicolinate synthase s 22.2 82 0.0028 28.2 4.3 45 122-168 7-51 (201)
96 2vch_A Hydroquinone glucosyltr 21.8 1.2E+02 0.0042 30.2 6.1 107 122-232 6-138 (480)
97 2h6e_A ADH-4, D-arabinose 1-de 21.7 1.8E+02 0.0061 27.2 7.0 76 122-212 171-248 (344)
98 1b73_A Glutamate racemase; iso 21.0 1.1E+02 0.0038 27.8 5.1 71 123-212 1-72 (254)
99 1al3_A Cys regulon transcripti 21.0 2.3E+02 0.0079 25.6 7.4 48 130-179 100-149 (324)
100 1ego_A Glutaredoxin; electron 21.0 1.5E+02 0.0052 21.0 5.0 36 123-158 1-36 (85)
101 1j4a_A D-LDH, D-lactate dehydr 20.3 1.1E+02 0.0039 29.1 5.2 52 123-179 2-53 (333)
102 3hhg_A Transcriptional regulat 20.2 2.1E+02 0.007 25.3 6.7 50 129-181 99-148 (306)
No 1
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=100.00 E-value=2.8e-42 Score=343.47 Aligned_cols=246 Identities=14% Similarity=0.142 Sum_probs=212.1
Q ss_pred CccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhhh
Q 015881 121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKN 200 (399)
Q Consensus 121 ~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~~~~~~~~~~l~~~LR~ 200 (399)
..||||||+.++|||+||++|++++||++||+++|+|++.+.++++++++|+||+||.++++....++..+++++++||+
T Consensus 7 ~~~~iLvi~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~~~~~~~~~~l~~~Lr~ 86 (349)
T 3tov_A 7 DYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEYNPNIDELIVVDKKGRHNSISGLNEVAREINA 86 (349)
T ss_dssp TTCEEEEECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSSCTTCSEEEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcCCCccEEEEeCcccccccHHHHHHHHHHHhh
Confidence 46999999999999999999999999999999999999999999999999999999999976432345677889999999
Q ss_pred CCC-cEEEEcCCCChHHHHHHHHhCCCeEEEecCCCccccccccccceeeccCcCCchhhHHHHHHHHHHHcCCCCCCCC
Q 015881 201 RYY-DMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVP 279 (399)
Q Consensus 201 ~~Y-DlvIdl~~~~~rsAll~~LsgA~~RIGy~~~~~~~~~~~~~lt~~v~~~~~~~~~h~v~~yl~LL~~LGi~~~~~p 279 (399)
++| |++||+|++ ++++++++++|++.|+||. ..+..++|++.+..... ..|.+++|+++++.||++.
T Consensus 87 ~~y~D~vidl~~~-~rs~~l~~~~~a~~riG~~-----~~~~~~~~~~~~~~~~~--~~h~v~r~~~ll~~lg~~~---- 154 (349)
T 3tov_A 87 KGKTDIVINLHPN-ERTSYLAWKIHAPITTGMS-----HFLFRPFMTKYTRLDRK--TRHAADMYINVLEQLGVTD---- 154 (349)
T ss_dssp HCCCCEEEECCCS-HHHHHHHHHHCCSEEEECC-----CTTTGGGCSEECCCCTT--TSCHHHHHHHHHHHTTCCC----
T ss_pred CCCCeEEEECCCC-hHHHHHHHHhCCCeEEecC-----CCCccccccccccCCCC--CccHHHHHHHHHHHhCCCc----
Confidence 999 999999999 9999999999999999998 44556788887765432 2689999999999999841
Q ss_pred CCCCCCceeecCHHHHHHHHHHHHHhCCC-CCCeEEEEcCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-CEEEe
Q 015881 280 RHPVPPLRVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVI 357 (399)
Q Consensus 280 ~~~~p~l~i~is~e~~~~a~~~l~~~gl~-~~~~IvIhPgas~~~~~~k~rg~~~KrWP~e~faeLa~~L~~~~-~Vvli 357 (399)
.....+.+.+++++++.+++++.+.|+. .+++|+||||+++.. |+||.|+|++|++.|.+++ +||++
T Consensus 155 -~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~~~~i~i~pga~~~~----------k~wp~~~~~~l~~~l~~~g~~vvl~ 223 (349)
T 3tov_A 155 -TSNSGLHIEICEEWRCQAQEFYSSHGLTDTDILIGFNIGSAVPE----------KRWPAERFAHVADYFGRLGYKTVFF 223 (349)
T ss_dssp -CCCCCCCCCCCHHHHHHHHHHHHHTTCCTTCCEEEEECCCSSGG----------GCCCHHHHHHHHHHHHHHTCEEEEC
T ss_pred -cCCCceeeeCCHHHHHHHHHHHHHcCCCCCCCEEEEeCCCCCcc----------CCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 1223467788888888888889888876 468999999999875 8899999999999998766 88899
Q ss_pred CCchhHHHHHHHHhcCCCCceeecCCccccchh
Q 015881 358 PHEKEREGVEDVVGDDASIVFITTPGQVRMSSY 390 (399)
Q Consensus 358 Ggp~E~e~aeeI~~~~~~~~~i~~~G~ls~~~~ 390 (399)
|+++|++.+++|.+..+..+ +++.|++++...
T Consensus 224 g~~~e~~~~~~i~~~~~~~~-~~l~g~~sl~e~ 255 (349)
T 3tov_A 224 GGPMDLEMVQPVVEQMETKP-IVATGKFQLGPL 255 (349)
T ss_dssp CCTTTHHHHHHHHHTCSSCC-EECTTCCCHHHH
T ss_pred eCcchHHHHHHHHHhccccc-EEeeCCCCHHHH
Confidence 99999999999998876544 778899888754
No 2
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=100.00 E-value=7.6e-37 Score=298.58 Aligned_cols=237 Identities=14% Similarity=0.154 Sum_probs=187.8
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCC---CCCC---hHHHHHHHH
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD---DWPE---PAEYTDILG 196 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~---~~~~---~~~~~~l~~ 196 (399)
||||||++++|||+||++|++++||++||+++|+|++.+.++++++.+|+||+|+.++++. .+.. +..+.++++
T Consensus 1 ~~ILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (326)
T 2gt1_A 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFRE 80 (326)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTHHHHTSTTEEEEEEECHHHHHTTTTSHHHHHHHHHHHH
T ss_pred CeEEEEeccccchHHhHHHHHHHHHHhCCCCEEEEEEehhhhHHHhcCCCCCEEEEccHHHhhhccchHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999997531 1111 235677889
Q ss_pred HhhhCCCcEEEEcCCCChHHH-HHHHHhCCCeEEEecCCCccccccccccceeeccCcCCchhhHHHHHHHHH-HHcCCC
Q 015881 197 VMKNRYYDMVLSTKLAGLGHA-AFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMV-DWLGRP 274 (399)
Q Consensus 197 ~LR~~~YDlvIdl~~~~~rsA-ll~~LsgA~~RIGy~~~~~~~~~~~~~lt~~v~~~~~~~~~h~v~~yl~LL-~~LGi~ 274 (399)
+||+++||++||++++ ++++ ++++++| +.|+||..+........++|++.+..... .|.+++|++++ +.+|++
T Consensus 81 ~lr~~~~D~vidl~~~-~~s~~~~~~l~~-~~~ig~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~~~~ll~~~lg~~ 155 (326)
T 2gt1_A 81 ALQAKNYDAVIDAQGL-VKSAALVTRLAH-GVKHGMDWQTAREPLASLFYNRKHHIAKQ---QHAVERTRELFAKSLGYS 155 (326)
T ss_dssp HHHHSBCSEEEECSCC-HHHHHHTGGGSB-SCEEEECTTTSSSGGGGGGCSEEECCCSS---SCHHHHHHHHHHHHHTCC
T ss_pred HHhccCCCEEEECCcc-HHHHHHHHHHcC-CcEEccCcCcccchhHHhhhccccCCCcC---cCHHHHHHHHHHHHcCCC
Confidence 9999999999999998 9999 8999999 89999985443233345678888775443 68899999988 689984
Q ss_pred CCCCCCCCCCCceeecCHHHHHHHHHHHHHhCCCCCCeEEEEcCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-C
Q 015881 275 FRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-P 353 (399)
Q Consensus 275 ~~~~p~~~~p~l~i~is~e~~~~a~~~l~~~gl~~~~~IvIhPgas~~~~~~k~rg~~~KrWP~e~faeLa~~L~~~~-~ 353 (399)
.. ...+.+.++++ .+.+.+...+++|+||||+++.. |+||.|+|++|++.|.+.+ +
T Consensus 156 ~~------~~~~~~~~~~~-------~~~~~~~~~~~~i~l~pga~~~~----------k~wp~~~~~~l~~~L~~~~~~ 212 (326)
T 2gt1_A 156 KP------QTQGDYAIAQH-------FLTNLPTDAGEYAVFLHATTRDD----------KHWPEEHWRELIGLLADSGIR 212 (326)
T ss_dssp CC------SSCCCCCCHHH-------HHTTCCTTTTSEEEEECCCSSGG----------GSCCHHHHHHHHHHTTTTCCE
T ss_pred CC------CCCcccccCch-------hhhhccccCCCEEEEEeCCCCcc----------ccCCHHHHHHHHHHHHHCCCc
Confidence 21 11223333322 12333444578999999999875 8899999999999998766 7
Q ss_pred EEEe-CCchhHHHHHHHHhcCCCCceeecCCccccchh
Q 015881 354 LFVI-PHEKEREGVEDVVGDDASIVFITTPGQVRMSSY 390 (399)
Q Consensus 354 Vvli-Ggp~E~e~aeeI~~~~~~~~~i~~~G~ls~~~~ 390 (399)
|+++ |+++|++.+++|.+.++++ +..|++++...
T Consensus 213 vvl~~g~~~e~~~~~~i~~~~~~~---~l~g~~sl~el 247 (326)
T 2gt1_A 213 IKLPWGAPHEEERAKRLAEGFAYV---EVLPKMSLEGV 247 (326)
T ss_dssp EEECCSSHHHHHHHHHHHTTCTTE---EECCCCCHHHH
T ss_pred EEEecCCHHHHHHHHHHHhhCCcc---cccCCCCHHHH
Confidence 7876 8899999999999877653 45688877653
No 3
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=100.00 E-value=1.7e-35 Score=289.97 Aligned_cols=248 Identities=15% Similarity=0.099 Sum_probs=191.5
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhhhCC
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRY 202 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~~~~~~~~~~l~~~LR~~~ 202 (399)
||||||+.++|||+||++|++++||++||+++|+|++.+.++++++.+|+||+|+.++.+.....+..+.++++.||+++
T Consensus 1 mkILii~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~~~~l~~~~p~i~~v~~~~~~~~~~~~~~~~~l~~~l~~~~ 80 (348)
T 1psw_A 1 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKR 80 (348)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHHHTTCTTEEEEEEC-------CHHHHHHHHHHTTTTT
T ss_pred CeEEEEeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcCCccCEEEEecCCccccchHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999986543335667788999999999
Q ss_pred CcEEEEcCCCChHHHHHHHHhCCCeEEEecCCCccccccccccceeeccCcCCchhhHHHHHHHHHHHcCCCCC--CCCC
Q 015881 203 YDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFR--SVPR 280 (399)
Q Consensus 203 YDlvIdl~~~~~rsAll~~LsgA~~RIGy~~~~~~~~~~~~~lt~~v~~~~~~~~~h~v~~yl~LL~~LGi~~~--~~p~ 280 (399)
||++||++++ ++++++++++|++.|+||. ..++.+++++.+..+.. ...|.+++|++++..+|+... .++.
T Consensus 81 ~D~vid~~~~-~~sa~~~~~~~~~~~ig~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~g~~~~~~~~~~ 153 (348)
T 1psw_A 81 YDRAYVLPNS-FKSALVPLFAGIPHRTGWR-----GEMRYGLLNDVRVLDKE-AWPLMVERYIALAYDKGIMRTAQDLPQ 153 (348)
T ss_dssp CSEEEECSCC-SGGGHHHHHTTCSEEEEEC-----TTTCTTTCTEEECCCTT-TCCSHHHHHHHTTSCGGGCSSGGGSCS
T ss_pred CCEEEECCCC-hHHHHHHHHhCCCEEeccC-----CCcccccccccccCCCC-CCchHHHHHHHHHhhcccccccccCCc
Confidence 9999999998 9999999999999999998 34445567776542221 125789999999888876210 0110
Q ss_pred CCCCCceeecCHHHHHHHHHHHHHhCCC-CCCeEEEEcCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-CEEEeC
Q 015881 281 HPVPPLRVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIP 358 (399)
Q Consensus 281 ~~~p~l~i~is~e~~~~a~~~l~~~gl~-~~~~IvIhPgas~~~~~~k~rg~~~KrWP~e~faeLa~~L~~~~-~VvliG 358 (399)
....+.+.+++++.+.+ .+.+++. .+++|+||||+++.. .|+||.|+|++|++.|.+++ +|+++|
T Consensus 154 -~~~~p~l~~~~~~~~~~---~~~~~~~~~~~~i~l~pga~~~~---------~k~wp~~~~~~l~~~L~~~~~~vvl~g 220 (348)
T 1psw_A 154 -PLLWPQLQVSEGEKSYT---CNQFSLSSERPMIGFCPGAEFGP---------AKRWPHYHYAELAKQLIDEGYQVVLFG 220 (348)
T ss_dssp -SCCCCCCCCCHHHHHHH---HHHTTCCSSSCEEEEECCCTTCG---------GGSCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred -ccCCceeecCHHHHHHH---HHHhCCCCCCcEEEEECCCCccc---------cCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 11233455566555433 3445665 568999999995422 38899999999999998776 899999
Q ss_pred CchhHHHHHHHHhcCCC---CceeecCCccccchh
Q 015881 359 HEKEREGVEDVVGDDAS---IVFITTPGQVRMSSY 390 (399)
Q Consensus 359 gp~E~e~aeeI~~~~~~---~~~i~~~G~ls~~~~ 390 (399)
+++|++.+++|.+..+. ..++++.|++++..+
T Consensus 221 ~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~ 255 (348)
T 1psw_A 221 SAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQA 255 (348)
T ss_dssp CGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHH
T ss_pred ChhhHHHHHHHHHhhhhccccceEeccCcCCHHHH
Confidence 99999999999887652 224778899887654
No 4
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=95.99 E-value=0.15 Score=50.47 Aligned_cols=104 Identities=11% Similarity=0.044 Sum_probs=64.2
Q ss_pred CCccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCc----hHhhhcCCC-CCEEEEecCCCCCCCh-----H
Q 015881 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG----KQTFELNKN-VRWANVYDLDDDWPEP-----A 189 (399)
Q Consensus 120 ~~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~----~~lle~nP~-ID~Vi~~d~k~~~~~~-----~ 189 (399)
+.+|||++|--..=||..+ -|++++|++. |+.++.+++.-.. .++++.... .|.-+.+.... ..+ .
T Consensus 23 ~~m~ki~~v~Gtr~~~~~~-a~li~~l~~~-~~~~~~~~~tG~h~~~~~~~~~~~~i~~~~~l~~~~~~--~~~~~~~~~ 98 (396)
T 3dzc_A 23 NAMKKVLIVFGTRPEAIKM-APLVQQLCQD-NRFVAKVCVTGQHREMLDQVLELFSITPDFDLNIMEPG--QTLNGVTSK 98 (396)
T ss_dssp -CCEEEEEEECSHHHHHHH-HHHHHHHHHC-TTEEEEEEECCSSSHHHHHHHHHTTCCCSEECCCCCTT--CCHHHHHHH
T ss_pred CCCCeEEEEEeccHhHHHH-HHHHHHHHhC-CCCcEEEEEecccHHHHHHHHHhcCCCCceeeecCCCC--CCHHHHHHH
Confidence 4568999997777777666 8999999986 8888876664322 244444332 12222111111 122 2
Q ss_pred HHHHHHHHhhhCCCcEEEEcCCCC--hHHHHHHHHhCCCe
Q 015881 190 EYTDILGVMKNRYYDMVLSTKLAG--LGHAAFLFMTTARD 227 (399)
Q Consensus 190 ~~~~l~~~LR~~~YDlvIdl~~~~--~rsAll~~LsgA~~ 227 (399)
.+.++.+.|++.++|+|+...... +..++.++..|+|.
T Consensus 99 ~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv 138 (396)
T 3dzc_A 99 ILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPV 138 (396)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCE
T ss_pred HHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCE
Confidence 345667778899999999865431 23456778888884
No 5
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=95.89 E-value=0.05 Score=52.90 Aligned_cols=105 Identities=10% Similarity=0.049 Sum_probs=74.9
Q ss_pred CCccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecC------------------
Q 015881 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDL------------------ 181 (399)
Q Consensus 120 ~~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~------------------ 181 (399)
...||||++-...-|++.-..+++++|+++ +.+|++++.+...+.++.. .+ +++.++.
T Consensus 18 ~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~--GheV~v~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 3otg_A 18 GRHMRVLFASLGTHGHTYPLLPLATAARAA--GHEVTFATGEGFAGTLRKL-GF-EPVATGMPVFDGFLAALRIRFDTDS 93 (412)
T ss_dssp CCSCEEEEECCSSHHHHGGGHHHHHHHHHT--TCEEEEEECGGGHHHHHHT-TC-EEEECCCCHHHHHHHHHHHHHSCSC
T ss_pred cceeEEEEEcCCCcccHHHHHHHHHHHHHC--CCEEEEEccHHHHHHHHhc-CC-ceeecCcccccchhhhhhhhhcccC
Confidence 346999999999999999999999999998 7899999988766665543 22 3444432
Q ss_pred ------CCCCCChH----H------HHHHHHHhhhCCCcEEEEcCCCChHHHHHHHHhCCCeEE
Q 015881 182 ------DDDWPEPA----E------YTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRV 229 (399)
Q Consensus 182 ------k~~~~~~~----~------~~~l~~~LR~~~YDlvIdl~~~~~rsAll~~LsgA~~RI 229 (399)
......+. . +.++.+.+++.++|+||..... +...+.+...|+|..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~-~~~~~aa~~~giP~v~ 156 (412)
T 3otg_A 94 PEGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISN-YGAGLAALKAGIPTIC 156 (412)
T ss_dssp CTTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTC-HHHHHHHHHHTCCEEE
T ss_pred CccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchh-hHHHHHHHHcCCCEEE
Confidence 00011111 1 1456677888899999887655 6677788899998544
No 6
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=95.01 E-value=0.19 Score=48.81 Aligned_cols=104 Identities=17% Similarity=0.024 Sum_probs=71.9
Q ss_pred CCccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCCC---------------
Q 015881 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD--------------- 184 (399)
Q Consensus 120 ~~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~--------------- 184 (399)
...||||++-..+-|++.-..+++++|+++ +-++++++.+...+.++.. .+. ++.+.....
T Consensus 13 ~~~MrIl~~~~~~~gh~~~~~~La~~L~~~--GheV~v~~~~~~~~~~~~~-G~~-~~~~~~~~~~~~~~~~~~~~~~~~ 88 (398)
T 4fzr_A 13 GSHMRILVIAGCSEGFVMPLVPLSWALRAA--GHEVLVAASENMGPTVTGA-GLP-FAPTCPSLDMPEVLSWDREGNRTT 88 (398)
T ss_dssp --CCEEEEECCSSHHHHGGGHHHHHHHHHT--TCEEEEEEEGGGHHHHHHT-TCC-EEEEESSCCHHHHHSBCTTSCBCC
T ss_pred CCceEEEEEcCCCcchHHHHHHHHHHHHHC--CCEEEEEcCHHHHHHHHhC-CCe-eEecCCccchHhhhhhhccCcccc
Confidence 346999999999999999999999999998 6789999988777766653 232 233321000
Q ss_pred CC-Ch----------------HHHHHHHHHhhhCCCcEEEEcCCCChHHHHHHHHhCCCeE
Q 015881 185 WP-EP----------------AEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDR 228 (399)
Q Consensus 185 ~~-~~----------------~~~~~l~~~LR~~~YDlvIdl~~~~~rsAll~~LsgA~~R 228 (399)
+. .. ..+.++.+.+|+.++|+++.-... +..++++...|+|.-
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~-~~~~~~a~~~giP~v 148 (398)
T 4fzr_A 89 MPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYS-LTGPLVAATLGIPWI 148 (398)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTC-THHHHHHHHHTCCEE
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccc-cHHHHHHHhhCCCEE
Confidence 00 00 011246667888899999865555 677888899999853
No 7
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=94.91 E-value=2.6 Score=39.83 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=63.0
Q ss_pred CccEEEEEcCCC---hhHH-HhHHHHHHHHHHHCCCcEEEEEEcCCch---HhhhcCCCCCEEEEecCCCCCCChHHHHH
Q 015881 121 DVRRCCCIISGG---VYEN-LLFFPAIQLLKDRYPGVLIDVIASARGK---QTFELNKNVRWANVYDLDDDWPEPAEYTD 193 (399)
Q Consensus 121 ~v~rILIIr~~~---IGDv-VLttPalraLK~~yP~A~IdvLv~~~~~---~lle~nP~ID~Vi~~d~k~~~~~~~~~~~ 193 (399)
.+||||+|.... .|-+ ..+.-+++.| .+.+|++++..... ..++..-.+ .++.++....+..+..+..
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L----~g~~v~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQ----DPESIVVFASTQNAEEAHAYDKTLDY-EVIRWPRSVMLPTPTTAHA 77 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTS----CGGGEEEEEECSSHHHHHHHHTTCSS-EEEEESSSSCCSCHHHHHH
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHh----cCCeEEEEECCCCccchhhhccccce-EEEEccccccccchhhHHH
Confidence 368999997633 2333 3333444555 57789999876654 334433333 4666655443445566677
Q ss_pred HHHHhhhCCCcEEEEcCCCC-hHHHHHHHHhCCCeEE
Q 015881 194 ILGVMKNRYYDMVLSTKLAG-LGHAAFLFMTTARDRV 229 (399)
Q Consensus 194 l~~~LR~~~YDlvIdl~~~~-~rsAll~~LsgA~~RI 229 (399)
+.+.+++.++|+++...... ...+.++...|.+..|
T Consensus 78 l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i 114 (394)
T 3okp_A 78 MAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVI 114 (394)
T ss_dssp HHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEE
T ss_pred HHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEE
Confidence 88889999999998644331 2334456667777555
No 8
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=94.64 E-value=0.35 Score=47.00 Aligned_cols=104 Identities=8% Similarity=-0.079 Sum_probs=72.9
Q ss_pred CCccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCCCCC---------C---
Q 015881 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWP---------E--- 187 (399)
Q Consensus 120 ~~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~~~---------~--- 187 (399)
..+||||++-..+.|++.=..++.++|+++ +.+|++++.+...+.++... + .++.++..-... .
T Consensus 18 ~~m~rIl~~~~~~~GHv~p~l~La~~L~~~--Gh~V~v~~~~~~~~~~~~~G-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
T 3rsc_A 18 RHMAHLLIVNVASHGLILPTLTVVTELVRR--GHRVSYVTAGGFAEPVRAAG-A-TVVPYQSEIIDADAAEVFGSDDLGV 93 (415)
T ss_dssp -CCCEEEEECCSCHHHHGGGHHHHHHHHHT--TCEEEEEECGGGHHHHHHTT-C-EEEECCCSTTTCCHHHHHHSSSSCH
T ss_pred ccCCEEEEEeCCCccccccHHHHHHHHHHC--CCEEEEEeCHHHHHHHHhcC-C-EEEeccccccccccchhhccccHHH
Confidence 457999999999999999999999999998 88999999888887776543 2 344443210000 0
Q ss_pred -----hH-----HHHHHHHHhhhCCCcEEEEc-CCCChHHHHHHHHhCCCeE
Q 015881 188 -----PA-----EYTDILGVMKNRYYDMVLST-KLAGLGHAAFLFMTTARDR 228 (399)
Q Consensus 188 -----~~-----~~~~l~~~LR~~~YDlvIdl-~~~~~rsAll~~LsgA~~R 228 (399)
.. ....+.+.+++.++|+||.- ... +...+++...|+|.-
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~l~~~~PDlVi~d~~~~-~~~~~aA~~~giP~v 144 (415)
T 3rsc_A 94 RPHLMYLRENVSVLRATAEALDGDVPDLVLYDDFPF-IAGQLLAARWRRPAV 144 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCCSEEEEESTTH-HHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchhh-hHHHHHHHHhCCCEE
Confidence 00 11245567888999999953 233 556777888999854
No 9
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=94.60 E-value=0.37 Score=47.18 Aligned_cols=103 Identities=8% Similarity=-0.083 Sum_probs=71.7
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCC--CC-------CChH---
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD--DW-------PEPA--- 189 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~--~~-------~~~~--- 189 (399)
+||||++-...-|++.-..++.++|+++ +.+|++++.....+.++.. .+ +++.++... .. ..+.
T Consensus 7 m~kIl~~~~~~~Gh~~p~~~la~~L~~~--G~~V~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (430)
T 2iyf_A 7 PAHIAMFSIAAHGHVNPSLEVIRELVAR--GHRVTYAIPPVFADKVAAT-GP-RPVLYHSTLPGPDADPEAWGSTLLDNV 82 (430)
T ss_dssp -CEEEEECCSCHHHHGGGHHHHHHHHHT--TCEEEEEECGGGHHHHHTT-SC-EEEECCCCSCCTTSCGGGGCSSHHHHH
T ss_pred cceEEEEeCCCCccccchHHHHHHHHHC--CCeEEEEeCHHHHHHHHhC-CC-EEEEcCCcCccccccccccchhhHHHH
Confidence 5799999888999999999999999987 7899999988776655542 33 344444210 00 0111
Q ss_pred ---------HHHHHHHHhhhCCCcEEEEcCCCChHHHHHHHHhCCCeEE
Q 015881 190 ---------EYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRV 229 (399)
Q Consensus 190 ---------~~~~l~~~LR~~~YDlvIdl~~~~~rsAll~~LsgA~~RI 229 (399)
....+.+.+++.++|++|.-... ....+++...|+|..+
T Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~-~~~~~~A~~~giP~v~ 130 (430)
T 2iyf_A 83 EPFLNDAIQALPQLADAYADDIPDLVLHDITS-YPARVLARRWGVPAVS 130 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSEEEEETTC-HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCEEEECCcc-HHHHHHHHHcCCCEEE
Confidence 12235566788899999976555 6677788889999544
No 10
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=94.22 E-value=0.25 Score=47.64 Aligned_cols=100 Identities=11% Similarity=-0.055 Sum_probs=68.4
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEe-cCCC--------CCC-------
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY-DLDD--------DWP------- 186 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~-d~k~--------~~~------- 186 (399)
||||++-..+-|.+.-..|++++|+++ +-++++++.+...+.++.. .+ .++.+ .... ...
T Consensus 2 MrIl~~~~~~~gh~~~~~~la~~L~~~--GheV~v~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMVPLCWALQAS--GHEVLIAAPPELQATAHGA-GL-TTAGIRGNDRTGDTGGTTQLRFPNPAFG 77 (391)
T ss_dssp CEEEEECCSCHHHHHTTHHHHHHHHHT--TCEEEEEECHHHHHHHHHB-TC-EEEEC--------------CCSCCGGGG
T ss_pred cEEEEEcCCCcchhhhHHHHHHHHHHC--CCEEEEecChhhHHHHHhC-CC-ceeeecCCccchhhhhhhcccccccccc
Confidence 899999999999999999999999998 6688899876665554432 12 22222 1000 000
Q ss_pred -----Ch----H-----H-------HHHHHHHhhhCCCcEEEEcCCCChHHHHHHHHhCCCe
Q 015881 187 -----EP----A-----E-------YTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARD 227 (399)
Q Consensus 187 -----~~----~-----~-------~~~l~~~LR~~~YDlvIdl~~~~~rsAll~~LsgA~~ 227 (399)
.. . . +.++.+.+|+.++|++|.-... +..++.+...|+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~-~~~~~aa~~~giP~ 138 (391)
T 3tsa_A 78 QRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCA-LIGRVLGGLLDLPV 138 (391)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTC-HHHHHHHHHTTCCE
T ss_pred cccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcch-hHHHHHHHHhCCCE
Confidence 00 0 0 3355677888899999876655 77888889999984
No 11
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=94.20 E-value=0.27 Score=47.81 Aligned_cols=102 Identities=10% Similarity=-0.063 Sum_probs=72.9
Q ss_pred CccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCC-----------------
Q 015881 121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD----------------- 183 (399)
Q Consensus 121 ~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~----------------- 183 (399)
.+||||++-..+-|.+.-..++.++|+++ +-+|++++. ...+.++.. .+ .++.+....
T Consensus 19 ~~MrIl~~~~~~~Ghv~~~~~La~~L~~~--GheV~v~~~-~~~~~~~~~-G~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (398)
T 3oti_A 19 RHMRVLFVSSPGIGHLFPLIQLAWGFRTA--GHDVLIAVA-EHADRAAAA-GL-EVVDVAPDYSAVKVFEQVAKDNPRFA 93 (398)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHT--TCEEEEEES-SCHHHHHTT-TC-EEEESSTTCCHHHHHHHHHHHCHHHH
T ss_pred hcCEEEEEcCCCcchHhHHHHHHHHHHHC--CCEEEEecc-chHHHHHhC-CC-eeEecCCccCHHHHhhhcccCCcccc
Confidence 35999999999999999999999999997 789999998 776666543 22 344443210
Q ss_pred ---------CCCCh---------HHHHHHHHHhhhCCCcEEEEcCCCChHHHHHHHHhCCCeE
Q 015881 184 ---------DWPEP---------AEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDR 228 (399)
Q Consensus 184 ---------~~~~~---------~~~~~l~~~LR~~~YDlvIdl~~~~~rsAll~~LsgA~~R 228 (399)
..... .....+.+.+|+.++|++|.-... +...+++...|+|.-
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVv~d~~~-~~~~~aA~~~giP~v 155 (398)
T 3oti_A 94 ETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGA-TVGLLAADRAGVPAV 155 (398)
T ss_dssp HTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHHHCCSEEEEETTC-HHHHHHHHHHTCCEE
T ss_pred ccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECchh-hHHHHHHHHcCCCEE
Confidence 00000 112356677888899999875555 667788999999954
No 12
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=94.02 E-value=0.37 Score=46.26 Aligned_cols=104 Identities=10% Similarity=-0.036 Sum_probs=72.5
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCC----C----CC-CChH---
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLD----D----DW-PEPA--- 189 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k----~----~~-~~~~--- 189 (399)
++|||++-..+-|++.-..++.++|+++ +.+|++++.+...+.++... + .++.++.. . .+ ..+.
T Consensus 4 M~~il~~~~~~~Ghv~~~~~La~~L~~~--GheV~v~~~~~~~~~~~~~G-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (402)
T 3ia7_A 4 QRHILFANVQGHGHVYPSLGLVSELARR--GHRITYVTTPLFADEVKAAG-A-EVVLYKSEFDTFHVPEVVKQEDAETQL 79 (402)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHT--TCEEEEEECHHHHHHHHHTT-C-EEEECCCGGGTSSSSSSSCCTTHHHHH
T ss_pred CCEEEEEeCCCCcccccHHHHHHHHHhC--CCEEEEEcCHHHHHHHHHcC-C-EEEecccccccccccccccccchHHHH
Confidence 5699999999999999999999999998 88999999887777666542 2 34444310 0 00 0111
Q ss_pred ----------HHHHHHHHhhhCCCcEEEEc-CCCChHHHHHHHHhCCCeEEEe
Q 015881 190 ----------EYTDILGVMKNRYYDMVLST-KLAGLGHAAFLFMTTARDRVSY 231 (399)
Q Consensus 190 ----------~~~~l~~~LR~~~YDlvIdl-~~~~~rsAll~~LsgA~~RIGy 231 (399)
....+.+.+++.++|+||.- ... ....+++...|+|. |.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~-~~~~~aA~~~giP~-v~~ 130 (402)
T 3ia7_A 80 HLVYVRENVAILRAAEEALGDNPPDLVVYDVFPF-IAGRLLAARWDRPA-VRL 130 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSEEEEESTTH-HHHHHHHHHHTCCE-EEE
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCEEEECchHH-HHHHHHHHhhCCCE-EEE
Confidence 02345667888999999964 333 55677788899984 444
No 13
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=93.25 E-value=0.82 Score=43.26 Aligned_cols=105 Identities=10% Similarity=0.021 Sum_probs=67.2
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCc--hHhhhcCCCCCEEEEecCCCCC--------CCh----
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG--KQTFELNKNVRWANVYDLDDDW--------PEP---- 188 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~--~~lle~nP~ID~Vi~~d~k~~~--------~~~---- 188 (399)
||||++..+.=|+...+..++++|+++ +.+|++++.... ...++. ..+ +++.++..... ..+
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~--G~~V~v~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQ--GWQVRWLGTADRMEADLVPK-HGI-EIDFIRISGLRGKGIKALIAAPLRIF 82 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTT--TCEEEEEECTTSTHHHHGGG-GTC-EEEECCCCCCTTCCHHHHHTCHHHHH
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHc--CCEEEEEecCCcchhhhccc-cCC-ceEEecCCccCcCccHHHHHHHHHHH
Confidence 899999876558888888999999886 789999987653 233332 123 23333321100 011
Q ss_pred HHHHHHHHHhhhCCCcEEEEcCCC-ChHHHHHHHHhCCCeEEEe
Q 015881 189 AEYTDILGVMKNRYYDMVLSTKLA-GLGHAAFLFMTTARDRVSY 231 (399)
Q Consensus 189 ~~~~~l~~~LR~~~YDlvIdl~~~-~~rsAll~~LsgA~~RIGy 231 (399)
..+.++.+.+++.++|+++..... .+...+++++.|+|..+-.
T Consensus 83 ~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 126 (364)
T 1f0k_A 83 NAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHE 126 (364)
T ss_dssp HHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEe
Confidence 123456677888899999987543 1344566778888866543
No 14
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=92.78 E-value=1 Score=44.44 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=73.1
Q ss_pred cCCccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCC---------------
Q 015881 119 RGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD--------------- 183 (399)
Q Consensus 119 ~~~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~--------------- 183 (399)
+..+||||++-...-|++.-..++.++|+++ +.+|+|++.+...+.++.. .++ ++.++...
T Consensus 17 ~~~~mrIl~~~~~~~GHv~p~l~la~~L~~~--GheV~~~~~~~~~~~v~~~-G~~-~~~i~~~~~~~~~~~~~~~~~~~ 92 (441)
T 2yjn_A 17 RGSHMRVVFSSMASKSHLFGLVPLAWAFRAA--GHEVRVVASPALTEDITAA-GLT-AVPVGTDVDLVDFMTHAGHDIID 92 (441)
T ss_dssp --CCCEEEEECCSCHHHHTTTHHHHHHHHHT--TCEEEEEECGGGHHHHHTT-TCC-EEECSCCCCHHHHHHHTTHHHHH
T ss_pred cCCccEEEEEcCCCcchHhHHHHHHHHHHHC--CCeEEEEeCchhHHHHHhC-CCc-eeecCCccchHHHhhhhhccccc
Confidence 4457999999999999999999999999996 8899999998887766543 232 22222110
Q ss_pred -----CC----CC-------------h----------H-HHHHHHHHhhhCCCcEEEEcCCCChHHHHHHHHhCCCeEE
Q 015881 184 -----DW----PE-------------P----------A-EYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRV 229 (399)
Q Consensus 184 -----~~----~~-------------~----------~-~~~~l~~~LR~~~YDlvIdl~~~~~rsAll~~LsgA~~RI 229 (399)
.+ .. . . .+.++++.+++.++|+||..... ....+++...|+|.-+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~-~~~~~aA~~lgiP~v~ 170 (441)
T 2yjn_A 93 YVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLT-FAAPIAAAVTGTPHAR 170 (441)
T ss_dssp HHTTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHCCSEEEECTTC-THHHHHHHHHTCCEEE
T ss_pred ccccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCEEEecCcc-hhHHHHHHHcCCCEEE
Confidence 00 00 0 0 22334455677899999977655 6677889999999543
No 15
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=92.41 E-value=0.7 Score=44.43 Aligned_cols=101 Identities=8% Similarity=0.006 Sum_probs=69.5
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCC--------------CC-C-
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD--------------DW-P- 186 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~--------------~~-~- 186 (399)
||||++-...-|++.-..++.++|+++ +.+|++++.+...+.++.. +++ ++.+.... .+ .
T Consensus 1 MrIl~~~~~~~Gh~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (384)
T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARNA--GHQVVMAANQDMGPVVTGV-GLP-AVATTDLPIRHFITTDREGRPEAIPSD 76 (384)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHT--TCEEEEEECGGGHHHHHHT-TCC-EEESCSSCHHHHHHBCTTSCBCCCCCS
T ss_pred CEEEEEeCCccchHhHHHHHHHHHHHC--CCEEEEEeCHHHHHHHHhC-CCE-EEEeCCcchHHHHhhhcccCccccCcc
Confidence 799999999999999999999999986 7899999988776665542 233 22222110 01 1
Q ss_pred -C----h-H---------HHHHHHHHhhhCCCcEEEEcCCCChHHHHHHHHhCCCeE
Q 015881 187 -E----P-A---------EYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDR 228 (399)
Q Consensus 187 -~----~-~---------~~~~l~~~LR~~~YDlvIdl~~~~~rsAll~~LsgA~~R 228 (399)
. . . ...++.+.+|+.++|++|..... ....+++...|+|.-
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~-~~~~~~a~~~giP~v 132 (384)
T 2p6p_A 77 PVAQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMS-YVAPLLALHLGVPHA 132 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTC-THHHHHHHHHTCCEE
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcch-hhHHHHHHhcCCCEE
Confidence 0 0 1 11234455777899999986655 666677888899853
No 16
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=92.39 E-value=0.62 Score=44.84 Aligned_cols=103 Identities=16% Similarity=0.025 Sum_probs=71.0
Q ss_pred CccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEec---------CC--------C
Q 015881 121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD---------LD--------D 183 (399)
Q Consensus 121 ~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d---------~k--------~ 183 (399)
+.||||++-..+.|.+.=.+++.++|+++ +-+|++++.+...++.+. .+..+-..+ .. .
T Consensus 21 ~~MRIL~~~~p~~GHv~P~l~LA~~L~~r--Gh~Vt~~t~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (400)
T 4amg_A 21 QSMRALFITSPGLSHILPTVPLAQALRAL--GHEVRYATGGDIRAVAEA--GLCAVDVSPGVNYAKLFVPDDTDVTDPMH 96 (400)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHT--TCEEEEEECSSTHHHHTT--TCEEEESSTTCCSHHHHSCCC--------
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHHC--CCEEEEEeCcchhhHHhc--CCeeEecCCchhHhhhccccccccccccc
Confidence 35999999999999999999999999999 889999998887776553 111111100 00 0
Q ss_pred C-CCChH------------HHHHHHHHhhhCCCcEEEEcCCCChHHHHHHHHhCCCeE
Q 015881 184 D-WPEPA------------EYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDR 228 (399)
Q Consensus 184 ~-~~~~~------------~~~~l~~~LR~~~YDlvIdl~~~~~rsAll~~LsgA~~R 228 (399)
. ..... ....++..+|+.++|+||..... ....+++...|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~-~~~~~~A~~~gip~~ 153 (400)
T 4amg_A 97 SEGLGEGFFAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQ-GAGPLTAAALQLPCV 153 (400)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTC-THHHHHHHHTTCCEE
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECcch-HHHHHHHHHcCCCce
Confidence 0 00000 01234566788899999987766 667788888898853
No 17
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=92.31 E-value=0.54 Score=44.90 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=59.4
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCC-CcEEEEEEcCCc--hHhhhcCCCCCEEEEecCCCCCCChH-----HHHHH
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYP-GVLIDVIASARG--KQTFELNKNVRWANVYDLDDDWPEPA-----EYTDI 194 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP-~A~IdvLv~~~~--~~lle~nP~ID~Vi~~d~k~~~~~~~-----~~~~l 194 (399)
||||++-.. -...+...|++++|+++.| +.+|-+...... ..+++.. .+...+.++.......+. .+..+
T Consensus 1 mkIl~v~~~-~~~~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (384)
T 1vgv_A 1 MKVLTVFGT-RPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLF-SIVPDYDLNIMQPGQGLTEITCRILEGL 78 (384)
T ss_dssp CEEEEEECS-HHHHHHHHHHHHHHHHSTTCEEEEEECCSSGGGGHHHHHHH-TCCCSEECCCCSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEecc-cHHHHHHHHHHHHHHhCCCCceEEEEcCCCHHHHHHHHHHc-CCCCCcceecCCCCccHHHHHHHHHHHH
Confidence 799998544 4556667899999999877 655544433322 3344431 121102233211111222 23567
Q ss_pred HHHhhhCCCcEEEEcCCC--ChHHHHHHHHhCCCeE
Q 015881 195 LGVMKNRYYDMVLSTKLA--GLGHAAFLFMTTARDR 228 (399)
Q Consensus 195 ~~~LR~~~YDlvIdl~~~--~~rsAll~~LsgA~~R 228 (399)
.+.+++.++|+++..... .+...+.++..|+|.-
T Consensus 79 ~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v 114 (384)
T 1vgv_A 79 KPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVG 114 (384)
T ss_dssp HHHHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEE
Confidence 778889999999986541 1334455667787753
No 18
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=92.09 E-value=0.79 Score=43.76 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=61.0
Q ss_pred CccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCch----HhhhcCCCCCEEEEecCCCCCCCh-----HHH
Q 015881 121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK----QTFELNKNVRWANVYDLDDDWPEP-----AEY 191 (399)
Q Consensus 121 ~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~----~lle~nP~ID~Vi~~d~k~~~~~~-----~~~ 191 (399)
.+||||++-.. .++.....|++++|++. |+.++++++..... ..++.. .+.-.+.++.......+ ..+
T Consensus 4 ~mmkIl~v~~~-~~~~~~~~~l~~~L~~~-~g~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (376)
T 1v4v_A 4 GMKRVVLAFGT-RPEATKMAPVYLALRGI-PGLKPLVLLTGQHREQLRQALSLF-GIQEDRNLDVMQERQALPDLAARIL 80 (376)
T ss_dssp CCEEEEEEECS-HHHHHHHHHHHHHHHTS-TTEEEEEEECSSCHHHHHHHHHTT-TCCCSEECCCCSSCCCHHHHHHHHH
T ss_pred CceEEEEEEec-cHHHHHHHHHHHHHHhC-CCCceEEEEcCCcHHHHHHHHHHc-CCCcccccccCCCCccHHHHHHHHH
Confidence 35899999765 44446678999999985 77788877654322 233332 22210222221111122 123
Q ss_pred HHHHHHhhhCCCcEEEEcCCC--ChHHHHHHHHhCCCe
Q 015881 192 TDILGVMKNRYYDMVLSTKLA--GLGHAAFLFMTTARD 227 (399)
Q Consensus 192 ~~l~~~LR~~~YDlvIdl~~~--~~rsAll~~LsgA~~ 227 (399)
.++.+.+++.++|+++..... .+..++.+++.|+|.
T Consensus 81 ~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~ 118 (376)
T 1v4v_A 81 PQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPV 118 (376)
T ss_dssp HHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHhCCCE
Confidence 456777889999999985432 123355677888885
No 19
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=91.98 E-value=2.2 Score=41.64 Aligned_cols=105 Identities=12% Similarity=0.055 Sum_probs=72.8
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCC--CC------CC-ChHH--
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLD--DD------WP-EPAE-- 190 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k--~~------~~-~~~~-- 190 (399)
+||||++-...-|++.-..++.++|+++ +.+|++++.+...+.++.. .+ +++.++.. .. +. ....
T Consensus 12 ~~~Il~~~~~~~GHv~p~l~la~~L~~~--Gh~V~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (424)
T 2iya_A 12 PRHISFFNIPGHGHVNPSLGIVQELVAR--GHRVSYAITDEFAAQVKAA-GA-TPVVYDSILPKESNPEESWPEDQESAM 87 (424)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHHHHHT--TCEEEEEECGGGHHHHHHH-TC-EEEECCCCSCCTTCTTCCCCSSHHHHH
T ss_pred cceEEEEeCCCCcccchHHHHHHHHHHC--CCeEEEEeCHHHHHHHHhC-CC-EEEecCccccccccchhhcchhHHHHH
Confidence 5899999999999999999999999987 7899999999887766543 22 33444321 00 00 1111
Q ss_pred ----------HHHHHHHhhhCCCcEEEEcCCCChHHHHHHHHhCCCeEEEec
Q 015881 191 ----------YTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYI 232 (399)
Q Consensus 191 ----------~~~l~~~LR~~~YDlvIdl~~~~~rsAll~~LsgA~~RIGy~ 232 (399)
...+.+.+++.++|++|.-... .....++...|+|. +.+.
T Consensus 88 ~~~~~~~~~~~~~l~~~l~~~~pD~VI~d~~~-~~~~~~A~~lgIP~-v~~~ 137 (424)
T 2iya_A 88 GLFLDEAVRVLPQLEDAYADDRPDLIVYDIAS-WPAPVLGRKWDIPF-VQLS 137 (424)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCSEEEEETTC-THHHHHHHHHTCCE-EEEE
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCEEEEcCcc-cHHHHHHHhcCCCE-EEEe
Confidence 1234556778899999976655 55677788889984 4443
No 20
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=89.63 E-value=1.3 Score=43.37 Aligned_cols=101 Identities=13% Similarity=-0.022 Sum_probs=68.2
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCC--CC----C-CC----hHHH
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLD--DD----W-PE----PAEY 191 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k--~~----~-~~----~~~~ 191 (399)
||||++-....|++.-..++.++|+++ +.+|++++.+...+.++.. .++ ++.++.. .. . .. +..+
T Consensus 1 MrIl~~~~~~~GH~~p~l~la~~L~~~--Gh~V~~~~~~~~~~~v~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (416)
T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKAL--GVQTRMCAPPAAEERLAEV-GVP-HVPVGLPQHMMLQEGMPPPPPEEEQRL 76 (416)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHT--TCEEEEEECGGGHHHHHHH-TCC-EEECSCCGGGCCCTTSCCCCHHHHHHH
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHC--CCeEEEEeCHHHHHHHHHc-CCe-eeecCCCHHHHHhhccccchhHHHHHH
Confidence 799999999999999999999999996 8899999988877766542 232 2233211 00 0 00 1111
Q ss_pred -----HHHHHHhh--hCCCcEEEEcC-CCChH--HHHHHHHhCCCeE
Q 015881 192 -----TDILGVMK--NRYYDMVLSTK-LAGLG--HAAFLFMTTARDR 228 (399)
Q Consensus 192 -----~~l~~~LR--~~~YDlvIdl~-~~~~r--sAll~~LsgA~~R 228 (399)
..+++.++ ..++|++|.-. .. +. ...++...|+|..
T Consensus 77 ~~~~~~~~~~~l~~~~~~pD~vi~d~~~~-~~~~~~~~A~~~giP~v 122 (416)
T 1rrv_A 77 AAMTVEMQFDAVPGAAEGCAAVVAVGDLA-AATGVRSVAEKLGLPFF 122 (416)
T ss_dssp HHHHHHHHHHHHHHHTTTCSEEEEEECHH-HHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEcCchH-HHHHHHHHHHHcCCCEE
Confidence 34455666 67899888443 23 44 5667889999854
No 21
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=88.13 E-value=3.2 Score=40.49 Aligned_cols=102 Identities=10% Similarity=-0.031 Sum_probs=67.7
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCC---------CCCC-ChHHH-
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLD---------DDWP-EPAEY- 191 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k---------~~~~-~~~~~- 191 (399)
||||++-....|++.=..++.++|+++ +.+|++++.+...+.++.. +++- +.++.. ..+. .+..+
T Consensus 1 M~Il~~~~~~~GHv~P~l~la~~L~~~--Gh~V~~~~~~~~~~~v~~~-g~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~ 76 (415)
T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRDL--GADVRMCAPPDCAERLAEV-GVPH-VPVGPSARAPIQRAKPLTAEDVRRFT 76 (415)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHT--TCEEEEEECGGGHHHHHHT-TCCE-EECCC-------CCSCCCHHHHHHHH
T ss_pred CeEEEEcCCCchhHHHHHHHHHHHHHC--CCeEEEEcCHHHHHHHHHc-CCee-eeCCCCHHHHhhcccccchHHHHHHH
Confidence 799999999999999999999999986 8999999998877766542 3332 222211 0100 01111
Q ss_pred ----HHHHHHhh--hCCCcEEEEcC-CCChH--HHHHHHHhCCCeEE
Q 015881 192 ----TDILGVMK--NRYYDMVLSTK-LAGLG--HAAFLFMTTARDRV 229 (399)
Q Consensus 192 ----~~l~~~LR--~~~YDlvIdl~-~~~~r--sAll~~LsgA~~RI 229 (399)
..+++.++ ..++|++|.-. .. .. ...++...|+|.-+
T Consensus 77 ~~~~~~~~~~l~~~~~~pD~vi~d~~~~-~~~~~~~~A~~lgiP~v~ 122 (415)
T 1iir_A 77 TEAIATQFDEIPAAAEGCAAVVTTGLLA-AAIGVRSVAEKLGIPYFY 122 (415)
T ss_dssp HHHHHHHHHHHHHHTTTCSEEEEESCHH-HHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECChhH-hHhhHHHHHHHhCCCEEE
Confidence 23344554 57899998543 33 44 56678889998543
No 22
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=87.25 E-value=2.7 Score=40.67 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=29.6
Q ss_pred CCccEEEEEcCCC----------h-hHHHhHHHHHHHHHHHCCCcEEEEEEcCCc
Q 015881 120 GDVRRCCCIISGG----------V-YENLLFFPAIQLLKDRYPGVLIDVIASARG 163 (399)
Q Consensus 120 ~~v~rILIIr~~~----------I-GDvVLttPalraLK~~yP~A~IdvLv~~~~ 163 (399)
..+||||+|...+ . |-...+.-++++|.++ +.+|++++....
T Consensus 18 ~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~--G~~V~v~~~~~~ 70 (438)
T 3c48_A 18 GSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQ--GIEVDIYTRATR 70 (438)
T ss_dssp -CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHT--TCEEEEEEECCC
T ss_pred cchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhc--CCEEEEEecCCC
Confidence 4579999998632 2 3345566788899887 779999986543
No 23
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=86.23 E-value=7.9 Score=37.36 Aligned_cols=103 Identities=10% Similarity=0.013 Sum_probs=63.8
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCc--hHhhhcCCCCCEEEEecC-----CCC---CCCh----
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG--KQTFELNKNVRWANVYDL-----DDD---WPEP---- 188 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~--~~lle~nP~ID~Vi~~d~-----k~~---~~~~---- 188 (399)
+||||.--+-=|-+.=++.+.++|+++ +.+|.|++.+.. ..++.... ++ +..++. +.. +..+
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~--g~~V~~vg~~~g~e~~~v~~~g-~~-~~~i~~~~~~~~~~~~~~~~~~~~~ 78 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQAR--GYAVHWLGTPRGIENDLVPKAG-LP-LHLIQVSGLRGKGLKSLVKAPLELL 78 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHT--TCEEEEEECSSSTHHHHTGGGT-CC-EEECC--------------CHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhC--CCEEEEEECCchHhhchhhhcC-Cc-EEEEECCCcCCCCHHHHHHHHHHHH
Confidence 678877544347666677788999987 789999998765 34554322 22 233331 111 1122
Q ss_pred HHHHHHHHHhhhCCCcEEEEcCCCC-hHHHHHHHHhCCCeEE
Q 015881 189 AEYTDILGVMKNRYYDMVLSTKLAG-LGHAAFLFMTTARDRV 229 (399)
Q Consensus 189 ~~~~~l~~~LR~~~YDlvIdl~~~~-~rsAll~~LsgA~~RI 229 (399)
..+....+.||+.++|+||.+.+.. .-..+.+++.|+|.-+
T Consensus 79 ~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vi 120 (365)
T 3s2u_A 79 KSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVI 120 (365)
T ss_dssp HHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEE
Confidence 2234456678999999999987651 2345568899998765
No 24
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=85.09 E-value=2.6 Score=39.81 Aligned_cols=104 Identities=15% Similarity=0.069 Sum_probs=59.1
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCC-cEEEEEEcCCchH----hhhcCCCCCEEEEecCC-CCCCCh----HHH
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPG-VLIDVIASARGKQ----TFELNKNVRWANVYDLD-DDWPEP----AEY 191 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~-A~IdvLv~~~~~~----lle~nP~ID~Vi~~d~k-~~~~~~----~~~ 191 (399)
.||||++-. ..++.....+++++|+++ |+ .++.+++.....+ +++... +...+.+... .....+ ..+
T Consensus 8 ~mkIl~v~~-~~~~~~~~~~l~~~L~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 84 (375)
T 3beo_A 8 RLKVMTIFG-TRPEAIKMAPLVLELQKH-PEKIESIVTVTAQHRQMLDQVLSIFG-ITPDFDLNIMKDRQTLIDITTRGL 84 (375)
T ss_dssp CEEEEEEEC-SHHHHHHHHHHHHHHTTC-TTTEEEEEEECCSSSHHHHHHHHHHT-CCCSEECCCCCTTCCHHHHHHHHH
T ss_pred CceEEEEec-CcHHHHHHHHHHHHHHhC-CCCCCeEEEEcCCCHHHHHHHHHHcC-CCCccccccCCCcccHHHHHHHHH
Confidence 489999974 477888888999999887 76 7777776554322 222111 1110111111 111111 123
Q ss_pred HHHHHHhhhCCCcEEEEcCCCC--hHHHHHHHHhCCCeE
Q 015881 192 TDILGVMKNRYYDMVLSTKLAG--LGHAAFLFMTTARDR 228 (399)
Q Consensus 192 ~~l~~~LR~~~YDlvIdl~~~~--~rsAll~~LsgA~~R 228 (399)
.++.+.+++.++|+++...... +-.++.++..|+|..
T Consensus 85 ~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~ip~v 123 (375)
T 3beo_A 85 EGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVG 123 (375)
T ss_dssp HHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEE
Confidence 4567778889999999833220 112345667788754
No 25
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=84.67 E-value=8.6 Score=36.78 Aligned_cols=99 Identities=7% Similarity=-0.113 Sum_probs=51.3
Q ss_pred cEEEEEcCC--ChhH-HHhHHHHHHHHHHHCCCcEEEEEEcCCch-HhhhcCCCCCEEEEecCCCCCCC--hHHHHHHHH
Q 015881 123 RRCCCIISG--GVYE-NLLFFPAIQLLKDRYPGVLIDVIASARGK-QTFELNKNVRWANVYDLDDDWPE--PAEYTDILG 196 (399)
Q Consensus 123 ~rILIIr~~--~IGD-vVLttPalraLK~~yP~A~IdvLv~~~~~-~lle~nP~ID~Vi~~d~k~~~~~--~~~~~~l~~ 196 (399)
||||+|... ..|- -..+.-+.++|+++ .+|++++..... ..+...+.. ......... +.. ...+.++.+
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~---~~V~v~~~~~~g~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~l~~ 75 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA---HEVIVFGIHAFGRSVHANIEEF-DAQTAEHVR-GLNEQGFYYSGLSE 75 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT---SEEEEEEESCCSCCSCSSSEEE-EHHHHHHHT-TCCSTTCCHHHHHH
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc---CCeEEEeecCCCcccccccccC-Ccccccccc-ccccccchHHHHHH
Confidence 899999642 2233 34455678888887 367777644331 111110000 000000000 111 234567788
Q ss_pred HhhhCCCcEEEEcCCCChHHHHHHHHhCCC
Q 015881 197 VMKNRYYDMVLSTKLAGLGHAAFLFMTTAR 226 (399)
Q Consensus 197 ~LR~~~YDlvIdl~~~~~rsAll~~LsgA~ 226 (399)
.|++.+||+++.....+....++..+.+.+
T Consensus 76 ~l~~~~~Div~~~~~~~~~~~~~~~~~~~~ 105 (413)
T 3oy2_A 76 FIDVHKPDIVMIYNDPIVIGNYLLAMGKCS 105 (413)
T ss_dssp HHHHHCCSEEEEEECHHHHHHHHHHGGGCC
T ss_pred HHHhcCCCEEEEcchHHHHHHHHHHhccCC
Confidence 899999999987733323445556666655
No 26
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=84.28 E-value=4.9 Score=39.65 Aligned_cols=115 Identities=13% Similarity=0.050 Sum_probs=61.9
Q ss_pred cccccCcccccCC---ccEEEEEcCCChhHHHhHHHHHHHHHHHCC-CcEEEEEEcC-C---chHhhhcCCC-CCEEEEe
Q 015881 109 PEIASLPLKIRGD---VRRCCCIISGGVYENLLFFPAIQLLKDRYP-GVLIDVIASA-R---GKQTFELNKN-VRWANVY 179 (399)
Q Consensus 109 ~~~~~~~~~~~~~---v~rILIIr~~~IGDvVLttPalraLK~~yP-~A~IdvLv~~-~---~~~lle~nP~-ID~Vi~~ 179 (399)
+.++-+-+.+..+ +|||++|--..=|+..+ -|++++|+++ | +.++.+++.- . ..++++.... .|.-+.+
T Consensus 11 ~~~~~~~~~~~~~~m~~~kI~~v~Gtr~~~~~~-a~li~~l~~~-~~~~~~~~~~tG~h~~m~~~~~~~~~i~~~~~l~v 88 (403)
T 3ot5_A 11 VDLGTENLYFQSNAMAKIKVMSIFGTRPEAIKM-APLVLALEKE-PETFESTVVITAQHREMLDQVLEIFDIKPDIDLDI 88 (403)
T ss_dssp ---------------CCEEEEEEECSHHHHHHH-HHHHHHHHTC-TTTEEEEEEECC-----CHHHHHHTTCCCSEECCC
T ss_pred cCcccchhhhhhhccccceEEEEEecChhHHHH-HHHHHHHHhC-CCCCcEEEEEecCcHHHHHHHHHhcCCCCCccccc
Confidence 3444444444333 24899987777777776 9999999975 7 7787766543 2 3344444332 1211211
Q ss_pred cCCCCCCCh-----HHHHHHHHHhhhCCCcEEEEcCCC--ChHHHHHHHHhCCCe
Q 015881 180 DLDDDWPEP-----AEYTDILGVMKNRYYDMVLSTKLA--GLGHAAFLFMTTARD 227 (399)
Q Consensus 180 d~k~~~~~~-----~~~~~l~~~LR~~~YDlvIdl~~~--~~rsAll~~LsgA~~ 227 (399)
-... .++ ..+.++.+.|++.++|+|+..... .+..++.++..|+|.
T Consensus 89 ~~~~--~~~~~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv 141 (403)
T 3ot5_A 89 MKKG--QTLAEITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKML 141 (403)
T ss_dssp CC-C--CCHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEE
T ss_pred CCCC--CCHHHHHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCCCE
Confidence 1111 122 234566777899999999986543 133466778888874
No 27
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=84.28 E-value=5.2 Score=38.98 Aligned_cols=102 Identities=11% Similarity=-0.088 Sum_probs=63.8
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCC---------CCCChH----
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD---------DWPEPA---- 189 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~---------~~~~~~---- 189 (399)
|||||+-.+.-||+.=..++.++|+++ +-++.+++.+...+.++... + +++.+.... ......
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~--Gh~V~v~~~~~~~~~v~~~g-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 76 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLREL--GADARMCLPPDYVERCAEVG-V-PMVPVGRAVRAGAREPGELPPGAAEVVT 76 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHT--TCCEEEEECGGGHHHHHHTT-C-CEEECSSCSSGGGSCTTCCCTTCGGGHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHC--CCeEEEEeCHHHHHHHHHcC-C-ceeecCCCHHHHhccccCCHHHHHHHHH
Confidence 799999999999999999999999997 67899999888888776542 2 233333110 001111
Q ss_pred -HHHHHHHHhhh--CCCcEEEEcCCCChHH---HHHHHHhCCCeEE
Q 015881 190 -EYTDILGVMKN--RYYDMVLSTKLAGLGH---AAFLFMTTARDRV 229 (399)
Q Consensus 190 -~~~~l~~~LR~--~~YDlvIdl~~~~~rs---All~~LsgA~~RI 229 (399)
.+...++.++. ++.|++|.-... ... .+++...|+|.-.
T Consensus 77 ~~~~~~~~~l~~~~~~pD~Vi~~~~~-~~~~~a~~~A~~lgiP~v~ 121 (404)
T 3h4t_A 77 EVVAEWFDKVPAAIEGCDAVVTTGLL-PAAVAVRSMAEKLGIPYRY 121 (404)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEECH-HHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCch-hhhhhhhhHHhhcCCCEEE
Confidence 11122222221 479999754333 222 5678888998543
No 28
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=83.40 E-value=3.8 Score=40.38 Aligned_cols=96 Identities=14% Similarity=0.055 Sum_probs=59.3
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCch-----Hhh-hcC--CCCCEEEEecCCCCCCChH----
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK-----QTF-ELN--KNVRWANVYDLDDDWPEPA---- 189 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~-----~ll-e~n--P~ID~Vi~~d~k~~~~~~~---- 189 (399)
+-|+++| .+.-=+.+..-|++++|++. .+..+++.-... +++ +.. |.+|.-+ +... .++.
T Consensus 9 ~~~~~~v-~GtRpe~~k~~p~~~~l~~~---~~~~~~~tgqh~~~~~~~~~~~~~~i~~~~~~l--~~~~--~~~~~~~~ 80 (385)
T 4hwg_A 9 MLKVMTI-VGTRPELIKLCCVISEFDKH---TKHILVHTGQNYAYELNQVFFDDMGIRKPDYFL--EVAA--DNTAKSIG 80 (385)
T ss_dssp CCEEEEE-ECSHHHHHHHHHHHHHHHHH---SEEEEEECSCHHHHHHTHHHHC-CCCCCCSEEC--CCCC--CCSHHHHH
T ss_pred hhheeEE-EEcCHhHHHHHHHHHHHHhc---CCEEEEEeCCCCChhHHHHHHhhCCCCCCceec--CCCC--CCHHHHHH
Confidence 3455544 66777899999999999987 566666544332 333 322 3344332 2221 1222
Q ss_pred -HHHHHHHHhhhCCCcEEEEcCC--CChHHHHHHHHhCCC
Q 015881 190 -EYTDILGVMKNRYYDMVLSTKL--AGLGHAAFLFMTTAR 226 (399)
Q Consensus 190 -~~~~l~~~LR~~~YDlvIdl~~--~~~rsAll~~LsgA~ 226 (399)
.+.++.+.|++.++|+|+.... ..+. ++.++..|+|
T Consensus 81 ~~~~~l~~~l~~~kPD~Vlv~gd~~~~~a-alaA~~~~IP 119 (385)
T 4hwg_A 81 LVIEKVDEVLEKEKPDAVLFYGDTNSCLS-AIAAKRRKIP 119 (385)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESCSGGGGG-HHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCcEEEEECCchHHHH-HHHHHHhCCC
Confidence 2345667788999999997653 2244 7888889988
No 29
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=79.40 E-value=9.2 Score=36.19 Aligned_cols=109 Identities=12% Similarity=0.039 Sum_probs=59.3
Q ss_pred CCccEEEEEcCCC----hhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchH---hhhcCCCCCEEEEecCCCCC----CCh
Q 015881 120 GDVRRCCCIISGG----VYENLLFFPAIQLLKDRYPGVLIDVIASARGKQ---TFELNKNVRWANVYDLDDDW----PEP 188 (399)
Q Consensus 120 ~~v~rILIIr~~~----IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~---lle~nP~ID~Vi~~d~k~~~----~~~ 188 (399)
.++||||+|.... =|-.....-++++|+++ +.+|++++...... -+... .. +++.++....+ ...
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 93 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDA--GHEVSVLAPASPHVKLPDYVVS-GG-KAVPIPYNGSVARLRFGP 93 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHT--TCEEEEEESCCTTSCCCTTEEE-CC-CCC------------CCH
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHC--CCeEEEEecCCccccCCccccc-CC-cEEeccccCCcccccccH
Confidence 4579999998642 23346677889999987 77999998765432 11110 01 23333221111 112
Q ss_pred HHHHHHHHHhhhCCCcEEEEcCCCCh-HHHHHHHHhCCCeEEEec
Q 015881 189 AEYTDILGVMKNRYYDMVLSTKLAGL-GHAAFLFMTTARDRVSYI 232 (399)
Q Consensus 189 ~~~~~l~~~LR~~~YDlvIdl~~~~~-rsAll~~LsgA~~RIGy~ 232 (399)
..+..+.+.+++.+||+++....... ...++....+++..+-+.
T Consensus 94 ~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h 138 (406)
T 2gek_A 94 ATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFH 138 (406)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEECCccchHHHHHHHHhcCCCEEEEEc
Confidence 23356677788889999997654422 233445556777655443
No 30
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=70.03 E-value=4.9 Score=35.98 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=40.0
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhc
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFEL 169 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~ 169 (399)
+||++.-++++| .+.+.-+++.|++. +++|++++.+.++.++..
T Consensus 2 k~IllgvTGs~a-a~k~~~l~~~L~~~--g~~V~vv~T~~A~~~i~~ 45 (189)
T 2ejb_A 2 QKIALCITGASG-VIYGIKLLQVLEEL--DFSVDLVISRNAKVVLKE 45 (189)
T ss_dssp CEEEEEECSSTT-HHHHHHHHHHHHHT--TCEEEEEECHHHHHHHHH
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHHC--CCEEEEEEChhHHHHhhH
Confidence 799999999999 77899999999988 899999999998888776
No 31
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=65.66 E-value=90 Score=29.32 Aligned_cols=71 Identities=8% Similarity=0.067 Sum_probs=42.4
Q ss_pred HHHHHhCCCCCCeEEEEcCCCC-ccccccCCCCCCCCCCHHHHHHHHHHhhhC----C-CEEEeCCchhH--HHHHHHHh
Q 015881 300 EKYKNAGAEQGKYIVIHGIESD-SKASMQSRGDTDSLLPIQVWAEIANGLREF----R-PLFVIPHEKER--EGVEDVVG 371 (399)
Q Consensus 300 ~~l~~~gl~~~~~IvIhPgas~-~~~~~k~rg~~~KrWP~e~faeLa~~L~~~----~-~VvliGgp~E~--e~aeeI~~ 371 (399)
...++.++..+ .+++..|.-. .. |. .+...+.+..+.+. . .++++|...+. +..+++++
T Consensus 241 ~~~~~~~~~~~-~~i~~~G~~~~~~----------Kg--~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~ 307 (439)
T 3fro_A 241 SLLSKFGMDEG-VTFMFIGRFDRGQ----------KG--VDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEE 307 (439)
T ss_dssp HHHHHHTCCSC-EEEEEECCSSCTT----------BC--HHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCC-cEEEEEccccccc----------cc--HHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHh
Confidence 44566777755 6666666544 32 33 45777777777652 3 67777766655 66777766
Q ss_pred cCCCCceeecCCcc
Q 015881 372 DDASIVFITTPGQV 385 (399)
Q Consensus 372 ~~~~~~~i~~~G~l 385 (399)
..++. +...|.+
T Consensus 308 ~~~~~--~~~~g~~ 319 (439)
T 3fro_A 308 KHGNV--KVITEML 319 (439)
T ss_dssp HCTTE--EEECSCC
T ss_pred hcCCE--EEEcCCC
Confidence 66533 3345543
No 32
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=63.85 E-value=27 Score=29.94 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=23.9
Q ss_pred cCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcC
Q 015881 129 ISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA 161 (399)
Q Consensus 129 r~~~IGDvVLttPalraLK~~yP~A~IdvLv~~ 161 (399)
-...++. .+..+++..++++||+++|++....
T Consensus 20 ~~~~~~~-~~l~~~l~~f~~~~P~v~l~l~~~~ 51 (228)
T 2fyi_A 20 TTHTQAR-YSLPEVIKAFRELFPEVRLELIQGT 51 (228)
T ss_dssp ECHHHHH-HTHHHHHHHHHHHCTTEEEEEEECC
T ss_pred eccchHH-HHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 3344554 4456899999999999999987644
No 33
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=62.80 E-value=30 Score=34.87 Aligned_cols=98 Identities=10% Similarity=0.079 Sum_probs=70.6
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcE-EEEEEcCCchHhhhcCCCCCEEEEecCCCCCCChHHH------HHH
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVL-IDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEY------TDI 194 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~-IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~~~~~~~~------~~l 194 (399)
-.|++|+-..+.|=.+|..=+++.+.+.++++. |-+++..+..++-+....+..+++....+. ....++ +.+
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atade-p~~~r~~~a~~alti 253 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDM-PPDKQVKVAELTLEM 253 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTS-CHHHHHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCC-CHHHHHHHHHHHHHH
Confidence 369999999999999999889999999999987 666788888887655544444555544332 111111 345
Q ss_pred HHHhhhCCCcEEEEcCCCChHHHHHHH
Q 015881 195 LGVMKNRYYDMVLSTKLAGLGHAAFLF 221 (399)
Q Consensus 195 ~~~LR~~~YDlvIdl~~~~~rsAll~~ 221 (399)
...+|.+..|++|-+.+- .+.|-...
T Consensus 254 AEyfrd~G~dVLil~Dsl-TR~A~A~r 279 (427)
T 3l0o_A 254 AKRLVEFNYDVVILLDSL-TRLARVYN 279 (427)
T ss_dssp HHHHHHTTCEEEEEEECH-HHHHHHHH
T ss_pred HHHHHHcCCCEEEecccc-hHHHHHHH
Confidence 667999999999988777 66654433
No 34
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=62.16 E-value=92 Score=29.21 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCC--CCC----ChHHHHHHHHHhhhCCCcEEEEcC
Q 015881 137 LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD--DWP----EPAEYTDILGVMKNRYYDMVLSTK 210 (399)
Q Consensus 137 VLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~--~~~----~~~~~~~l~~~LR~~~YDlvIdl~ 210 (399)
..+.-++++|+++ +.+|++++.......-...+.|. +..++... .+. .+.....+.+.+++.++|+++...
T Consensus 31 ~~~~~la~~L~~~--G~~V~v~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dvv~~~~ 107 (394)
T 2jjm_A 31 VVGTELGKQLAER--GHEIHFITSGLPFRLNKVYPNIY-FHEVTVNQYSVFQYPPYDLALASKMAEVAQRENLDILHVHY 107 (394)
T ss_dssp HHHHHHHHHHHHT--TCEEEEECSSCC----CCCTTEE-EECCCCC----CCSCCHHHHHHHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHHHHHhC--CCEEEEEeCCCCCcccccCCceE-EEecccccccccccccccHHHHHHHHHHHHHcCCCEEEEcc
Confidence 4555688999887 67999998754332222233332 22222110 011 122345567778889999998754
Q ss_pred C
Q 015881 211 L 211 (399)
Q Consensus 211 ~ 211 (399)
.
T Consensus 108 ~ 108 (394)
T 2jjm_A 108 A 108 (394)
T ss_dssp S
T ss_pred h
Confidence 3
No 35
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=61.47 E-value=27 Score=32.25 Aligned_cols=76 Identities=11% Similarity=-0.007 Sum_probs=49.9
Q ss_pred ccEEEEEcCC---------------ChhH-HHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCCCC
Q 015881 122 VRRCCCIISG---------------GVYE-NLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDW 185 (399)
Q Consensus 122 v~rILIIr~~---------------~IGD-vVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~~ 185 (399)
+||||+|... ..|- -..+.-++++|+++ +.++++++....... .+.+-.+...
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~--G~~v~v~~~~~~~~~------~~~~~~~~~~--- 71 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLEL--GHEVFLLGAPGSPAG------RPGLTVVPAG--- 71 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHT--TCEEEEESCTTSCCC------STTEEECSCC---
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHc--CCeEEEEecCCCCCC------CCcceeccCC---
Confidence 5899999877 3343 45566788999887 779999987654321 1223233221
Q ss_pred CChHHHHHHHHHhhhCCCcEEEEcCCC
Q 015881 186 PEPAEYTDILGVMKNRYYDMVLSTKLA 212 (399)
Q Consensus 186 ~~~~~~~~l~~~LR~~~YDlvIdl~~~ 212 (399)
.+..+.+.+++.+||+++.....
T Consensus 72 ----~~~~l~~~l~~~~~Dvi~~~~~~ 94 (342)
T 2iuy_A 72 ----EPEEIERWLRTADVDVVHDHSGG 94 (342)
T ss_dssp ----SHHHHHHHHHHCCCSEEEECSSS
T ss_pred ----cHHHHHHHHHhcCCCEEEECCch
Confidence 13467788888999999876543
No 36
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=54.39 E-value=33 Score=33.01 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=53.3
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEc-CCchHhhhcC-CCCC--EEEEecCCCCCCChHHHHHHHHHh
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIAS-ARGKQTFELN-KNVR--WANVYDLDDDWPEPAEYTDILGVM 198 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~-~~~~~lle~n-P~ID--~Vi~~d~k~~~~~~~~~~~l~~~L 198 (399)
.+|. |...++|......|++++|++++ +|.+.+. +...++.+.. +.|. .+ ++.. . ...+.+.|
T Consensus 41 ~~iw-ih~~s~G~~~~~~~L~~~L~~~~---~v~v~~~~~~~~~~~~~~~~~v~~~~~--~p~~----~---~~~l~~~l 107 (374)
T 2xci_A 41 GALW-VHTASIGEFNTFLPILKELKREH---RILLTYFSPRAREYLKTKSDFYDCLHP--LPLD----N---PFSVKRFE 107 (374)
T ss_dssp TCEE-EECSSHHHHHHHHHHHHHHHHHS---CEEEEESCGGGHHHHHTTGGGCSEEEE--CCCS----S---HHHHHHHH
T ss_pred CCEE-EEcCCHHHHHHHHHHHHHHHhcC---CEEEEEcCCcHHHHHHHhcccccceeE--CCCC----C---HHHHHHHH
Confidence 3454 55677999999999999999998 4544443 2233333321 4444 22 3321 1 24566678
Q ss_pred hhCCCcEEEEcCCCChHHHHHHHHhC
Q 015881 199 KNRYYDMVLSTKLAGLGHAAFLFMTT 224 (399)
Q Consensus 199 R~~~YDlvIdl~~~~~rsAll~~Lsg 224 (399)
|+.++|+++..... +...++..+.+
T Consensus 108 ~~~~pDiv~~~~~~-~~~~~~~~~~~ 132 (374)
T 2xci_A 108 ELSKPKALIVVERE-FWPSLIIFTKV 132 (374)
T ss_dssp HHHCCSEEEEESCC-CCHHHHHHCCS
T ss_pred HHhCCCEEEEECcc-CcHHHHHHHhC
Confidence 88889999987655 44455554444
No 37
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=53.98 E-value=8.6 Score=35.61 Aligned_cols=96 Identities=9% Similarity=-0.032 Sum_probs=52.5
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHH-CCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhhhC
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDR-YPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNR 201 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~-yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~~~~~~~~~~l~~~LR~~ 201 (399)
||||||+++.--+ ||--+.+.++.. .|+.+|+..+.+..- +.|+....+. ..-....+.++++.+.
T Consensus 2 mrilvINPnts~~--~T~~i~~~~~~~~~p~~~i~~~t~~~gp------~~i~~~~d~~-----~a~~~l~~~~~~l~~~ 68 (245)
T 3qvl_A 2 VRIQVINPNTSLA--MTETIGAAARAVAAPGTEILAVCPRAGV------PSIEGHFDEA-----IAAVGVLEQIRAGREQ 68 (245)
T ss_dssp EEEEEECSSCCHH--HHHHHHHHHHHHCCTTEEEEEECCSSSC------SSCCSHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCHH--HHHHHHHHHHHhcCCCCEEEEEeCCCCc------hhhcChhHHH-----HHHHHHHHHHHHHHHC
Confidence 8999999987433 444444555544 699999998865322 2332221111 0111234556666678
Q ss_pred CCcEEEEcCCCChHHHHHHHHhCCCeEEEec
Q 015881 202 YYDMVLSTKLAGLGHAAFLFMTTARDRVSYI 232 (399)
Q Consensus 202 ~YDlvIdl~~~~~rsAll~~LsgA~~RIGy~ 232 (399)
.+|+++..-+....-..+--...+| -+|..
T Consensus 69 g~d~iviaCnt~~~l~~lr~~~~iP-vigi~ 98 (245)
T 3qvl_A 69 GVDGHVIASFGDPGLLAARELAQGP-VIGIA 98 (245)
T ss_dssp TCSEEEEC-CCCTTHHHHHHHCSSC-EEEHH
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCC-EECcc
Confidence 9999997665411112233344555 35653
No 38
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=53.45 E-value=1.4e+02 Score=29.57 Aligned_cols=106 Identities=12% Similarity=0.026 Sum_probs=67.2
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcC---------CCCCEEEEecCC----C---C-
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELN---------KNVRWANVYDLD----D---D- 184 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~n---------P~ID~Vi~~d~k----~---~- 184 (399)
.++||++-.-..|-++=.+.+.+.|.++ +.+|++++.+.+...+... +.|+ ++.++.. . .
T Consensus 8 ~~~vl~~p~p~~GHi~P~l~La~~L~~r--G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~~lp~~~~~~~~ 84 (482)
T 2pq6_A 8 KPHVVMIPYPVQGHINPLFKLAKLLHLR--GFHITFVNTEYNHKRLLKSRGPKAFDGFTDFN-FESIPDGLTPMEGDGDV 84 (482)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHT--TCEEEEEEEHHHHHHHC------------CEE-EEEECCCCC--------
T ss_pred CCEEEEecCccchhHHHHHHHHHHHHhC--CCeEEEEeCCchhhhhccccccccccCCCceE-EEECCCCCCCcccccCc
Confidence 4799999999999999999999999987 8999999988776544322 3443 3333210 0 0
Q ss_pred CCCh------------HHHHHHHHHhhh----CCCcEEEEcCCCChHHHHHHHHhCCCeEEEec
Q 015881 185 WPEP------------AEYTDILGVMKN----RYYDMVLSTKLAGLGHAAFLFMTTARDRVSYI 232 (399)
Q Consensus 185 ~~~~------------~~~~~l~~~LR~----~~YDlvIdl~~~~~rsAll~~LsgA~~RIGy~ 232 (399)
...+ ..+.++++.+++ .++|++|.=... .....++...|+| ++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~-~~~~~vA~~lgiP-~v~~~ 146 (482)
T 2pq6_A 85 SQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCM-SFTIQAAEEFELP-NVLYF 146 (482)
T ss_dssp -CCHHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTC-THHHHHHHHTTCC-EEEEE
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcc-hhHHHHHHHcCCC-EEEEe
Confidence 0011 112345555653 589999854444 3455577778887 45443
No 39
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=52.81 E-value=62 Score=27.20 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=26.3
Q ss_pred EEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcC
Q 015881 125 CCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA 161 (399)
Q Consensus 125 ILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~ 161 (399)
|=|--...++.. +..+++..++++||+++|.+....
T Consensus 13 l~Ig~~~~~~~~-~l~~~l~~~~~~~P~v~i~~~~~~ 48 (232)
T 3ho7_A 13 LNIAVLPTIAPY-LLPRVFPIWKKELAGLEIHVSEMQ 48 (232)
T ss_dssp EEEEECTTTHHH-HHHHHHHHHHHHSTTEEEEEEECC
T ss_pred EEEEeccccchh-hhHHHHHHHHHHCCCcEEEEEeCC
Confidence 334345555555 567999999999999999987643
No 40
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=49.26 E-value=30 Score=32.13 Aligned_cols=82 Identities=11% Similarity=-0.011 Sum_probs=49.0
Q ss_pred cEEEEEcCCC--h-hHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCCCCCChHH----HHHHH
Q 015881 123 RRCCCIISGG--V-YENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAE----YTDIL 195 (399)
Q Consensus 123 ~rILIIr~~~--I-GDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~~~~~~~----~~~l~ 195 (399)
||||+|.... . |-...+.-++++|+++ +.+|++++........ ..+ +++.++... +..... ...+.
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~---~~~-~v~~~~~~~-~~~~~~~~~~~~~l~ 73 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAAR--GHHVRVYTQSWEGDCP---KAF-ELIQVPVKS-HTNHGRNAEYYAWVQ 73 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHT--TCCEEEEESEECSCCC---TTC-EEEECCCCC-SSHHHHHHHHHHHHH
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhC--CCeEEEEecCCCCCCC---CCc-EEEEEccCc-ccchhhHHHHHHHHH
Confidence 7899996542 3 3445566788999987 6789999865332221 233 455554432 122211 23455
Q ss_pred HHhhhCCCcEEEEcCC
Q 015881 196 GVMKNRYYDMVLSTKL 211 (399)
Q Consensus 196 ~~LR~~~YDlvIdl~~ 211 (399)
+.+++.++|+++....
T Consensus 74 ~~i~~~~~Dvv~~~~~ 89 (374)
T 2iw1_A 74 NHLKEHPADRVVGFNK 89 (374)
T ss_dssp HHHHHSCCSEEEESSC
T ss_pred HHHhccCCCEEEEecC
Confidence 6688899999987543
No 41
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=46.87 E-value=52 Score=27.30 Aligned_cols=31 Identities=6% Similarity=0.140 Sum_probs=23.7
Q ss_pred CCChhHHHhHHHHHHHHHHHCCCcEEEEEEcC
Q 015881 130 SGGVYENLLFFPAIQLLKDRYPGVLIDVIASA 161 (399)
Q Consensus 130 ~~~IGDvVLttPalraLK~~yP~A~IdvLv~~ 161 (399)
...++. .+..+++..++++||+++|++....
T Consensus 12 ~~~~~~-~~l~~~l~~f~~~~P~i~i~l~~~~ 42 (209)
T 2ql3_A 12 YPALGP-TILPSMLYAFTAEYPRASVEFREDT 42 (209)
T ss_dssp CGGGTT-TTHHHHHHHHHHHCTTEEEEEEECC
T ss_pred chhhhh-hhHHHHHHHHHHHCCCceEEEEECc
Confidence 344554 3456899999999999999987754
No 42
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=45.58 E-value=83 Score=26.83 Aligned_cols=50 Identities=8% Similarity=0.083 Sum_probs=32.7
Q ss_pred cCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCch--HhhhcCCCCCEEEEec
Q 015881 129 ISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK--QTFELNKNVRWANVYD 180 (399)
Q Consensus 129 r~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~--~lle~nP~ID~Vi~~d 180 (399)
....++ ..+..+++..++++||+++|.+....... +.+. +-.+|=+|.+.
T Consensus 25 ~~~~~~-~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~-~g~~Dl~i~~~ 76 (241)
T 3oxn_A 25 TTDYAM-QTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLT-YEGADLAICRP 76 (241)
T ss_dssp ECSHHH-HHTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHH-TSCCSEEEECC
T ss_pred echHHH-HHHHHHHHHHHHHHCCCCEEEEEECCcccHHHHHH-cCCCCEEEecC
Confidence 334444 45667999999999999999998855432 1222 24566666554
No 43
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=45.48 E-value=96 Score=30.34 Aligned_cols=107 Identities=13% Similarity=0.163 Sum_probs=58.0
Q ss_pred ccEEEEEcCCC--------------hhHH-HhHHHHHHHHHHHCCCcEEEEEEcCCch---Hh----hhc---CCCCCEE
Q 015881 122 VRRCCCIISGG--------------VYEN-LLFFPAIQLLKDRYPGVLIDVIASARGK---QT----FEL---NKNVRWA 176 (399)
Q Consensus 122 v~rILIIr~~~--------------IGDv-VLttPalraLK~~yP~A~IdvLv~~~~~---~l----le~---nP~ID~V 176 (399)
.||||+|...+ .|-+ ....-++++|.++ +.+|++++..... +- ++. ...| +|
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv-~v 83 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEM--GVQVDIITRRIKDENWPEFSGEIDYYQETNKV-RI 83 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHT--TCEEEEEEECCCBTTBGGGCCSEEECTTCSSE-EE
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhc--CCeEEEEeCCCCcccccchhhhHHhccCCCCe-EE
Confidence 48999998642 3443 4556788888887 7899999864332 11 221 2344 34
Q ss_pred EEecCCCC-CC---Ch----HH-HHHHHHHhhh--CCCcEEEEcCCC-ChHHHHHHHHhCCCeEEEe
Q 015881 177 NVYDLDDD-WP---EP----AE-YTDILGVMKN--RYYDMVLSTKLA-GLGHAAFLFMTTARDRVSY 231 (399)
Q Consensus 177 i~~d~k~~-~~---~~----~~-~~~l~~~LR~--~~YDlvIdl~~~-~~rsAll~~LsgA~~RIGy 231 (399)
+.++.... +. .+ .. ...+.+.+|+ .+||++...... ++-..+++.+.|+|..+-.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~~~~p~v~~~ 150 (499)
T 2r60_A 84 VRIPFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLPFTFTG 150 (499)
T ss_dssp EEECCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred EEecCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHhcCCcEEEEc
Confidence 44442111 00 11 11 1356667777 589998764211 0122334556688865433
No 44
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=41.54 E-value=54 Score=28.14 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=23.7
Q ss_pred cCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcC
Q 015881 129 ISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA 161 (399)
Q Consensus 129 r~~~IGDvVLttPalraLK~~yP~A~IdvLv~~ 161 (399)
....++. .+..+++..++++||+++|.+....
T Consensus 33 ~~~~~~~-~~l~~~l~~f~~~~P~i~l~i~~~~ 64 (238)
T 3onm_A 33 ASDDTAD-TLLPFLLNRVATLYPRLAIDVRVKR 64 (238)
T ss_dssp ECHHHHT-THHHHHHHHHHHHCTTCCEEEEECC
T ss_pred ccchhhH-HHHHHHHHHHHHHCCCcEEEEEECC
Confidence 3444444 3456899999999999999987643
No 45
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=41.52 E-value=1.2e+02 Score=30.54 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=69.6
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcE-EEEEEcCCchHhhhcCCCCCEEEEecCCCCCCChHH------HHHH
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVL-IDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAE------YTDI 194 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~-IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~~~~~~~------~~~l 194 (399)
-.|++|+-.++.|=..|..=+.+.+.+.++++. |-+++..+..++-+....+..+++....+. ....+ -+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atade-p~~~r~~~a~~alt~ 252 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDE-PASRHVQVAEMVIEK 252 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTS-CHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCC-CHHHHHHHHHHHHHH
Confidence 369999999999999999989999999999986 456678888887665555556666655433 11111 1234
Q ss_pred HHHhhhCCCcEEEEcCCCChHHHHH
Q 015881 195 LGVMKNRYYDMVLSTKLAGLGHAAF 219 (399)
Q Consensus 195 ~~~LR~~~YDlvIdl~~~~~rsAll 219 (399)
...+|.+..|++|-+..- .+.|-.
T Consensus 253 AEyfrd~G~dVLil~Dsl-TR~A~A 276 (422)
T 3ice_A 253 AKRLVEHKKDVIILLDSI-TRLARA 276 (422)
T ss_dssp HHHHHHTSCEEEEEEECH-HHHHHH
T ss_pred HHHHHhcCCCEEEEEeCc-hHHHHH
Confidence 567889999999988776 555443
No 46
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=40.95 E-value=27 Score=30.74 Aligned_cols=38 Identities=11% Similarity=0.012 Sum_probs=30.5
Q ss_pred ccEEEEEcCCChhH----HHhHHHHHHHHHHHCCCcEEEEEE
Q 015881 122 VRRCCCIISGGVYE----NLLFFPAIQLLKDRYPGVLIDVIA 159 (399)
Q Consensus 122 v~rILIIr~~~IGD----vVLttPalraLK~~yP~A~IdvLv 159 (399)
|||||||.-+--++ ..|+--+++.+++++|+++|+++-
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~d 42 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARRE 42 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 58999998877774 445667889999999999988774
No 47
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=40.71 E-value=1.8e+02 Score=25.19 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=74.3
Q ss_pred CCccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCC-------------------chHhhhcCCCCCEEEEec
Q 015881 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASAR-------------------GKQTFELNKNVRWANVYD 180 (399)
Q Consensus 120 ~~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~-------------------~~~lle~nP~ID~Vi~~d 180 (399)
.++|||-||..+.+-+--+..-+-.-+|+--+-+.+.++--+. +..+++..|.=+.||.+|
T Consensus 2 ~~~Mki~ii~VGk~k~~~~~~~i~eY~kRl~~~~~~ei~ei~~~k~~~~~s~~~~~~~~~~Eg~~il~~i~~~~~vI~LD 81 (163)
T 4fak_A 2 AEFMKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLE 81 (163)
T ss_dssp CSCCEEEEEEESCCCCHHHHHHHHHHHHHHTTTCEEEEEEECCCCCCTTCCHHHHHHHHHHHHHHHHHTCCTTSEEEEEE
T ss_pred CcccEEEEEEecCcCcHHHHHHHHHHHHHccCcCCeEEEEecccccccccchhhHHHHHHHHHHHHHHhCCCCCEEEEEc
Confidence 3579999999999988877777777788777778888775322 123566666668899998
Q ss_pred CCCCCCChHHHHHHHHHhhhCCC-cEEEEcCCC-ChHHHHHHHHhCCCeEEEec
Q 015881 181 LDDDWPEPAEYTDILGVMKNRYY-DMVLSTKLA-GLGHAAFLFMTTARDRVSYI 232 (399)
Q Consensus 181 ~k~~~~~~~~~~~l~~~LR~~~Y-DlvIdl~~~-~~rsAll~~LsgA~~RIGy~ 232 (399)
.++.-.+-.++-+.+...+.... |+++..-+. |+...+.. .|..++.++
T Consensus 82 ~~Gk~~sS~~fA~~l~~~~~~g~~~i~FvIGG~~Gl~~~v~~---rA~~~lSlS 132 (163)
T 4fak_A 82 IQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQ---RSNYALSFS 132 (163)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHHH---HCSEEEESC
T ss_pred CCCCcCCHHHHHHHHHHHHhcCCcceEEEEECCCccCHHHHH---hcCceEEEe
Confidence 75542333445556666655554 888887765 44455433 366777776
No 48
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=40.27 E-value=23 Score=30.96 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHhhhCC---CEEEeCCchhHHHHHHHHhcCCCCceeecCCccccc
Q 015881 334 SLLPIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDASIVFITTPGQVRMS 388 (399)
Q Consensus 334 KrWP~e~faeLa~~L~~~~---~VvliGgp~E~e~aeeI~~~~~~~~~i~~~G~ls~~ 388 (399)
|.|..+.||+.++.+...+ -++++||+. .+.+++.+.+... + .-+++|+.
T Consensus 85 k~~sS~~fA~~l~~~~~~g~~~i~FvIGG~~--Gl~~~v~~rA~~~--l-SlS~mTfp 137 (163)
T 4fak_A 85 KMLSSEGLAQELNQRMTQGQSDFVFVIGGSN--GLHKDVLQRSNYA--L-SFSKMTFP 137 (163)
T ss_dssp EECCHHHHHHHHHHHHHTTCCEEEEEECBTT--BCCHHHHHHCSEE--E-ESCSSCCC
T ss_pred CcCCHHHHHHHHHHHHhcCCcceEEEEECCC--ccCHHHHHhcCce--E-EEecCCCC
Confidence 5699999999999887654 467788876 2334455544421 2 33455554
No 49
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=39.96 E-value=24 Score=36.14 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=29.7
Q ss_pred CCccEEEEE--------cCCChhHHHhHHHHHHHHHHHCCCcEEEEEEc
Q 015881 120 GDVRRCCCI--------ISGGVYENLLFFPAIQLLKDRYPGVLIDVIAS 160 (399)
Q Consensus 120 ~~v~rILII--------r~~~IGDvVLttPalraLK~~yP~A~IdvLv~ 160 (399)
..-||||.| +.++|||++-++| ++|+++ +.+|++++.
T Consensus 7 ~~~MkIl~vs~E~~P~~K~GGLadvv~~L~--~aL~~~--G~~V~Vi~P 51 (536)
T 3vue_A 7 HHHMNVVFVGAEMAPWSKTGGLGDVLGGLP--PAMAAN--GHRVMVISP 51 (536)
T ss_dssp -CCCEEEEECSCBTTTBCSSHHHHHHHHHH--HHHHTT--TCEEEEEEE
T ss_pred CCCcEEEEEEEeccchhccCcHHHHHHHHH--HHHHHc--CCeEEEEec
Confidence 446999998 5799999999887 788887 778888873
No 50
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=39.68 E-value=1.3e+02 Score=25.15 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=24.1
Q ss_pred cCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcC
Q 015881 129 ISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA 161 (399)
Q Consensus 129 r~~~IGDvVLttPalraLK~~yP~A~IdvLv~~ 161 (399)
-...++.. +..+++..++++||+++|++....
T Consensus 11 ~~~~~~~~-~l~~~l~~f~~~~P~v~l~l~~~~ 42 (219)
T 1i6a_A 11 LIPTVGPY-LLPHIIPMLHQTFPKLEMYLHEAQ 42 (219)
T ss_dssp ECTTTHHH-HHHHHHHHHHHHCTTEEEEEEECC
T ss_pred eccchhhh-hhhHHHHHHHHHCCCeEEEEEECC
Confidence 34455553 456899999999999999987644
No 51
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=38.58 E-value=30 Score=31.35 Aligned_cols=45 Identities=11% Similarity=0.089 Sum_probs=37.2
Q ss_pred CccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhc
Q 015881 121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFEL 169 (399)
Q Consensus 121 ~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~ 169 (399)
..+|||+.-.+++|- +-+.-+++.|++.. +|++++.+..+.++..
T Consensus 18 ~~k~IllgvTGsiaa-~k~~~ll~~L~~~g---~V~vv~T~~A~~fv~~ 62 (209)
T 1mvl_A 18 RKPRVLLAASGSVAA-IKFGNLCHCFTEWA---EVRAVVTKSSLHFLDK 62 (209)
T ss_dssp -CCEEEEEECSSGGG-GGHHHHHHHHHTTS---EEEEEECTGGGGTCCG
T ss_pred CCCEEEEEEeCcHHH-HHHHHHHHHHhcCC---CEEEEEcchHHHhcCH
Confidence 358999999999985 56889999999875 9999999988877543
No 52
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=38.29 E-value=89 Score=26.55 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHHHCCCcEEEEEEc
Q 015881 137 LLFFPAIQLLKDRYPGVLIDVIAS 160 (399)
Q Consensus 137 VLttPalraLK~~yP~A~IdvLv~ 160 (399)
.+..++++.++++||+++|.+...
T Consensus 21 ~~lp~~l~~f~~~~P~v~l~l~~~ 44 (218)
T 2y7p_A 21 YFMPPLMEALAQRAPHIQISTLRP 44 (218)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeC
Confidence 455689999999999999998653
No 53
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=37.89 E-value=21 Score=31.54 Aligned_cols=44 Identities=11% Similarity=-0.010 Sum_probs=38.1
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhh
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle 168 (399)
.+||++.-++++|=. -+.-+++.|++. +++|+++..+..+.++.
T Consensus 2 ~k~IllgvTGs~aa~-k~~~l~~~L~~~--g~~V~vv~T~~A~~fi~ 45 (181)
T 1g63_A 2 YGKLLICATASINVI-NINHYIVELKQH--FDEVNILFSPSSKNFIN 45 (181)
T ss_dssp CCCEEEEECSCGGGG-GHHHHHHHHTTT--SSCEEEEECGGGGGTSC
T ss_pred CCEEEEEEECHHHHH-HHHHHHHHHHHC--CCEEEEEEchhHHHHHH
Confidence 478999999999877 888999999887 89999999998876654
No 54
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=36.26 E-value=1.3e+02 Score=27.34 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=57.1
Q ss_pred cCCccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcC-CchHhh--hcCCCCCEEEEecCCCCCCChHHH-HHH
Q 015881 119 RGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA-RGKQTF--ELNKNVRWANVYDLDDDWPEPAEY-TDI 194 (399)
Q Consensus 119 ~~~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~-~~~~ll--e~nP~ID~Vi~~d~k~~~~~~~~~-~~l 194 (399)
.+.+|||+|+-.+. |+. +.+++++|++..-+++|..++.. ....++ ...-+|. ++.+++++ +....++ -.+
T Consensus 19 ~~~~~rI~~l~SG~-g~~--~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~~gIp-~~~~~~~~-~~~r~~~~~~~ 93 (229)
T 3auf_A 19 QGHMIRIGVLISGS-GTN--LQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVD-ALHMDPAA-YPSRTAFDAAL 93 (229)
T ss_dssp BTTCEEEEEEESSC-CHH--HHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHHTTCE-EEECCGGG-SSSHHHHHHHH
T ss_pred cCCCcEEEEEEeCC-cHH--HHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHHcCCC-EEEECccc-ccchhhccHHH
Confidence 34468998885444 554 67889999887656888777643 222222 2223453 44444432 1222222 357
Q ss_pred HHHhhhCCCcEEEEcCC-CChHHHHHHH
Q 015881 195 LGVMKNRYYDMVLSTKL-AGLGHAAFLF 221 (399)
Q Consensus 195 ~~~LR~~~YDlvIdl~~-~~~rsAll~~ 221 (399)
+..|++.+.|++|...- ..+...++..
T Consensus 94 ~~~l~~~~~Dliv~agy~~IL~~~~l~~ 121 (229)
T 3auf_A 94 AERLQAYGVDLVCLAGYMRLVRGPMLTA 121 (229)
T ss_dssp HHHHHHTTCSEEEESSCCSCCCHHHHHH
T ss_pred HHHHHhcCCCEEEEcChhHhCCHHHHhh
Confidence 78899999999998743 2234455543
No 55
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=35.79 E-value=1.3e+02 Score=26.06 Aligned_cols=79 Identities=13% Similarity=0.044 Sum_probs=57.4
Q ss_pred EEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCC--chHhhhcC-CCCCEEEEecCCCCCCChHHHHHHHHHhhhCCC
Q 015881 127 CIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASAR--GKQTFELN-KNVRWANVYDLDDDWPEPAEYTDILGVMKNRYY 203 (399)
Q Consensus 127 IIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~--~~~lle~n-P~ID~Vi~~d~k~~~~~~~~~~~l~~~LR~~~Y 203 (399)
+....++|+.-+..|+++.+.+.-.+-.|-|+..+. +.+.+... =+.++|+.+..++. -...+.+-+.||...|
T Consensus 50 l~~~~g~gel~LL~P~La~l~~~~~~r~vlwI~Pp~~l~~~~L~~~Gl~~~rll~v~~~~~---~daLwa~EqALrsG~~ 126 (161)
T 1oft_A 50 SLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDN---AAALALSCEALRLGRS 126 (161)
T ss_dssp EEESCHHHHHHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHHHTTCCGGGEEEECCSST---THHHHHHHHHHHTTCE
T ss_pred ccCCCcHHHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCCHHHEEEEECCCh---HHHHHHHHHHHhcCCc
Confidence 345578999999999999887533455788887665 56666643 46678988876543 2345677788999999
Q ss_pred cEEEE
Q 015881 204 DMVLS 208 (399)
Q Consensus 204 DlvId 208 (399)
.+||-
T Consensus 127 ~aVl~ 131 (161)
T 1oft_A 127 HTVVS 131 (161)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 99995
No 56
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=35.66 E-value=80 Score=26.06 Aligned_cols=31 Identities=16% Similarity=-0.004 Sum_probs=23.3
Q ss_pred CCChhHHHhHHHHHHHHHHHCCCcEEEEEEcC
Q 015881 130 SGGVYENLLFFPAIQLLKDRYPGVLIDVIASA 161 (399)
Q Consensus 130 ~~~IGDvVLttPalraLK~~yP~A~IdvLv~~ 161 (399)
...++.. +..+++..++++||+++|++....
T Consensus 11 ~~~~~~~-~l~~~l~~~~~~~P~i~i~i~~~~ 41 (219)
T 3jv9_A 11 IFTVAPY-LLPKLIVSLRRTAPKMPLMLEENY 41 (219)
T ss_dssp ETTTHHH-HHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred cchhhHH-HHHHHHHHHHHHCCCcEEEEEeCC
Confidence 3444444 456899999999999999987644
No 57
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=35.15 E-value=55 Score=27.92 Aligned_cols=54 Identities=7% Similarity=0.095 Sum_probs=35.2
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEec
Q 015881 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD 180 (399)
Q Consensus 124 rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d 180 (399)
+|=|-.+..+|.. +..|++..++++||+++|++.+......+.+ ..+|=.|.+.
T Consensus 20 ~lrI~~~~~~~~~-~L~~~l~~f~~~~P~i~l~l~~~~~~~~l~~--~~~Dlai~~~ 73 (218)
T 2qsx_A 20 LLVVDVTPSFASL-WLVPNINDFHQRHPNIRVKILTGDGAVKNIH--GESDLHVRCL 73 (218)
T ss_dssp EEEEEECHHHHHH-THHHHHHHHHHHCTTCEEEEEECCSCC-------CCSEEEEEE
T ss_pred cEEEecCHHHHHH-HHHHHHHHHHHHCCCeEEEEEecCCcccccC--CCCCEEEEcC
Confidence 3444445566665 4569999999999999999998765533333 3477666553
No 58
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=35.15 E-value=1.1e+02 Score=24.95 Aligned_cols=80 Identities=13% Similarity=0.029 Sum_probs=57.0
Q ss_pred EEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCC--chHhhhcC-CCCCEEEEecCCCCCCChHHHHHHHHHhhhCCC
Q 015881 127 CIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASAR--GKQTFELN-KNVRWANVYDLDDDWPEPAEYTDILGVMKNRYY 203 (399)
Q Consensus 127 IIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~--~~~lle~n-P~ID~Vi~~d~k~~~~~~~~~~~l~~~LR~~~Y 203 (399)
+....++|..-+.+|+++.|-+.-.+-.|-|+..+. +.+-+... =..++|+.+..++. -.....+-+.||...|
T Consensus 8 l~~~~g~~e~~lLlp~L~~l~~~~~~r~ilwi~pp~~~~~~~L~~~Gl~~~rll~v~~~~~---~d~lwa~EqaLrsg~~ 84 (119)
T 1ofu_X 8 SLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDN---AAALALSCEALRLGRS 84 (119)
T ss_dssp EEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSH---HHHHHHHHHHHHHTCE
T ss_pred eecCCCccHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCChHHEEEEECCCc---HHHHHHHHHHHhcCCc
Confidence 345578999999999999887533455788887654 45655533 46678988876432 2245667788999999
Q ss_pred cEEEEc
Q 015881 204 DMVLST 209 (399)
Q Consensus 204 DlvIdl 209 (399)
.+||--
T Consensus 85 ~aVl~w 90 (119)
T 1ofu_X 85 HTVVSW 90 (119)
T ss_dssp EEEEEC
T ss_pred cEEEEC
Confidence 999963
No 59
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=35.08 E-value=61 Score=26.73 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=34.0
Q ss_pred CCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEec
Q 015881 130 SGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD 180 (399)
Q Consensus 130 ~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d 180 (399)
...++. .+..+++..++++||+++|.+........+.+ -.+|=+|...
T Consensus 14 ~~~~~~-~~l~~~l~~f~~~~P~v~l~i~~~~~~~~l~~--g~~D~~i~~~ 61 (213)
T 3hhf_B 14 AMPMVL-HLLAPLAAKFNERYPHIRLSLVSSEGYINLIE--RKVDIALRAG 61 (213)
T ss_dssp CHHHHH-HTHHHHHHHHHHHCTTEEEEEECCSTTHHHHT--TSSSEEEECC
T ss_pred CHHHHH-HHHHHHHHHHHHHCCCcEEEEEeCCcHHHHHh--CCccEEEEEe
Confidence 334444 35579999999999999999996655555333 4677777654
No 60
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=34.93 E-value=2.1e+02 Score=27.25 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=49.8
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCC-chHhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhhh
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASAR-GKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKN 200 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~-~~~lle~nP~ID~Vi~~d~k~~~~~~~~~~~l~~~LR~ 200 (399)
.+||||+-.+.+ +.++++++++. +.++.++..+. ..+-.. ..|+.+..+..+ .-.++..+++
T Consensus 7 ~~~ilI~g~g~~-----~~~~~~a~~~~--G~~~v~v~~~~~~~~~~~---~ad~~~~~~~~d-------~~~l~~~~~~ 69 (403)
T 4dim_A 7 NKRLLILGAGRG-----QLGLYKAAKEL--GIHTIAGTMPNAHKPCLN---LADEISYMDISN-------PDEVEQKVKD 69 (403)
T ss_dssp CCEEEEECCCGG-----GHHHHHHHHHH--TCEEEEEECSSCCHHHHH---HCSEEEECCTTC-------HHHHHHHTTT
T ss_pred CCEEEEECCcHh-----HHHHHHHHHHC--CCEEEEEcCCCCCCcchh---hCCeEEEecCCC-------HHHHHHHHHH
Confidence 589999988865 46689999998 77887776543 434333 357777765422 2356677888
Q ss_pred CCCcEEEEc
Q 015881 201 RYYDMVLST 209 (399)
Q Consensus 201 ~~YDlvIdl 209 (399)
.+.|.++-.
T Consensus 70 ~~~d~v~~~ 78 (403)
T 4dim_A 70 LNLDGAATC 78 (403)
T ss_dssp SCCSEEECC
T ss_pred cCCCEEEeC
Confidence 899999864
No 61
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=34.68 E-value=69 Score=27.22 Aligned_cols=43 Identities=9% Similarity=0.248 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHHHCCCcEEEEEEcCCchHhhh--cCCCCCEEEEec
Q 015881 137 LLFFPAIQLLKDRYPGVLIDVIASARGKQTFE--LNKNVRWANVYD 180 (399)
Q Consensus 137 VLttPalraLK~~yP~A~IdvLv~~~~~~lle--~nP~ID~Vi~~d 180 (399)
.+..+++..++++||+++|++..... ..+++ .+..+|=.|...
T Consensus 43 ~~l~~~l~~f~~~~P~v~l~~~~~~~-~~~~~~l~~g~~Dl~i~~~ 87 (238)
T 2hxr_A 43 YFIGPLMADFYARYPSITLQLQEMSQ-EKIEDMLCRDELDVGIAFA 87 (238)
T ss_dssp TTHHHHHHHHHHHCTTSCEEEEECCH-HHHHHHHHTTSCSEEEEES
T ss_pred HHHHHHHHHHHHhCCCcEEEEEECCH-HHHHHHHHcCCCcEEEEcC
Confidence 34668999999999999999887542 22222 234566555543
No 62
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=34.48 E-value=32 Score=30.85 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=37.9
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhh
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle 168 (399)
|||++--++++|= +-+.-+++.|++. ++++|++++.+.++.++.
T Consensus 1 ~~IllgvTGsiaa-~k~~~ll~~L~~~-~g~~V~vv~T~~A~~fi~ 44 (197)
T 1sbz_A 1 MKLIVGMTGATGA-PLGVALLQALREM-PNVETHLVMSKWAKTTIE 44 (197)
T ss_dssp CEEEEEECSSSCH-HHHHHHHHHHHTC-TTCEEEEEECHHHHHHHH
T ss_pred CEEEEEEeChHHH-HHHHHHHHHHHhc-cCCEEEEEECchHHHHhH
Confidence 6899999999976 5588999999764 689999999998888776
No 63
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=34.20 E-value=49 Score=27.71 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=34.5
Q ss_pred cCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecC
Q 015881 129 ISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDL 181 (399)
Q Consensus 129 r~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~ 181 (399)
-...++.. +..+++..++++||+++|.+.+......+.++ .+|=.|.+..
T Consensus 18 ~~~~~~~~-~l~~~l~~f~~~~P~i~l~i~~~~~~~~l~~g--~~Dl~i~~~~ 67 (219)
T 3kos_A 18 VVGTFAIG-CLFPLLSDFKRSYPHIDLHISTHNNRVDPAAE--GLDYTIRYGG 67 (219)
T ss_dssp EEHHHHHH-THHHHHHHHHHHCTTEEEEEEEECSCCCHHHH--TCSEEEEEEC
T ss_pred eCHHHHHH-HHHhHHHHHHHHCCCceEEEEeccCccccccC--CccEEEEeCC
Confidence 33444443 45699999999999999999886665555444 3776666543
No 64
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=33.32 E-value=32 Score=31.07 Aligned_cols=47 Identities=21% Similarity=0.284 Sum_probs=37.4
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcC
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELN 170 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~n 170 (399)
.+|||+.-.+++| .+-+.-+++.|++. .+++|+++..+.++.++...
T Consensus 19 ~k~IllgvTGsia-a~k~~~lv~~L~~~-~g~~V~vv~T~~A~~fi~~~ 65 (206)
T 1qzu_A 19 KFHVLVGVTGSVA-ALKLPLLVSKLLDI-PGLEVAVVTTERAKHFYSPQ 65 (206)
T ss_dssp SEEEEEEECSSGG-GGTHHHHHHHHC----CEEEEEEECTGGGGSSCGG
T ss_pred CCEEEEEEeChHH-HHHHHHHHHHHhcc-cCCEEEEEECHhHHHHhCHH
Confidence 4899999999999 44668889999872 38999999999988777543
No 65
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=32.68 E-value=34 Score=34.16 Aligned_cols=106 Identities=8% Similarity=-0.049 Sum_probs=67.1
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCc-----hHhhhc----CCCCCEEEEecCCC--C---CCC
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG-----KQTFEL----NKNVRWANVYDLDD--D---WPE 187 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~-----~~lle~----nP~ID~Vi~~d~k~--~---~~~ 187 (399)
.++|+++-...-|++.=.+.+.+.|.++.|+.+|++++.+.. ...++. .+.|+ ++.++... . ...
T Consensus 9 ~~~vv~~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~-~~~lp~~~~~~~~~~~~ 87 (463)
T 2acv_A 9 NSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQ-LIDLPEVEPPPQELLKS 87 (463)
T ss_dssp CEEEEEECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEE-EEECCCCCCCCGGGGGS
T ss_pred CCEEEEEcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcccCCCCce-EEECCCCCCCcccccCC
Confidence 479999999999999999999999999999999999987764 233321 23443 33443211 0 011
Q ss_pred hHH-HH--------HHHHHhhh---CCCcEEEEcCCCChHHHHHHHHhCCCeEE
Q 015881 188 PAE-YT--------DILGVMKN---RYYDMVLSTKLAGLGHAAFLFMTTARDRV 229 (399)
Q Consensus 188 ~~~-~~--------~l~~~LR~---~~YDlvIdl~~~~~rsAll~~LsgA~~RI 229 (399)
... +. .+...|++ .++|++|.-... .....++...|+|.-+
T Consensus 88 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~d~vI~D~~~-~~~~~vA~~lgiP~v~ 140 (463)
T 2acv_A 88 PEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFC-VSMIDVGNEFGIPSYL 140 (463)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGG-GGGHHHHHHTTCCEEE
T ss_pred ccHHHHHHHHhhhHHHHHHHHhccCCCCeEEEECCcc-hhHHHHHHHcCCCEEE
Confidence 100 11 12223444 689999854433 2345677788998544
No 66
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=32.56 E-value=2.1e+02 Score=26.27 Aligned_cols=77 Identities=5% Similarity=-0.025 Sum_probs=45.1
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhhhC
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNR 201 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~~~~~~~~~~l~~~LR~~ 201 (399)
.|||||+-.+.. ..++++|++..-..++.++-.....+... ..|+.+..+.-.. ....-.++..+++.
T Consensus 4 ~~~Ili~g~g~~------~~l~~~l~~~~~~~~v~~~d~~~~~~~~~---~~d~~~~~~~~~~---~~~~~~l~~~~~~~ 71 (331)
T 2pn1_A 4 KPHLLITSAGRR------AKLVEYFVKEFKTGRVSTADCSPLASALY---MADQHYIVPKIDE---VEYIDHLLTLCQDE 71 (331)
T ss_dssp CCEEEEESCTTC------HHHHHHHHHHCCSSEEEEEESCTTCGGGG---GSSSEEECCCTTS---TTHHHHHHHHHHHH
T ss_pred cceEEEecCCch------HHHHHHHHHhcCCCEEEEEeCCCcchhHH---hhhceecCCCCCC---hhHHHHHHHHHHHc
Confidence 489999966654 36789999985335555553332222222 4566666552111 11223456667778
Q ss_pred CCcEEEEcC
Q 015881 202 YYDMVLSTK 210 (399)
Q Consensus 202 ~YDlvIdl~ 210 (399)
+.|+++...
T Consensus 72 ~~d~vi~~~ 80 (331)
T 2pn1_A 72 GVTALLTLI 80 (331)
T ss_dssp TCCEEEESS
T ss_pred CCCEEEeCC
Confidence 899999753
No 67
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=32.20 E-value=23 Score=28.24 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHHHCCC-cEEEEEEcCCchHhhhcCCCCCEEEEecCCCC--CCChHH
Q 015881 137 LLFFPAIQLLKDRYPG-VLIDVIASARGKQTFELNKNVRWANVYDLDDD--WPEPAE 190 (399)
Q Consensus 137 VLttPalraLK~~yP~-A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~--~~~~~~ 190 (399)
.-+.=+.+.|...||+ +.|.+-..+.....|+- .||..++|+++.. |....+
T Consensus 17 ~ra~~laqeLl~~Fp~~l~V~~~l~p~~~G~FEV--~vng~lV~SKk~~ggFP~~~e 71 (96)
T 2npb_A 17 PKYLQLKEKLEHEFPGCLDICGEGTPQVTGFFEV--TVAGKLVHSKKRGDGYVDTES 71 (96)
T ss_dssp HHHHHHHHHHHHHSBTTEEEEECCCSSCCSCCEE--EETTEEEEETTTTCCSSCSHH
T ss_pred HHHHHHHHHHHHhCCcceEEEEEEcCCCCcEEEE--EECCEEEEEEecCCCCCChHH
Confidence 3455678899999999 66666555655555554 3467888887643 445443
No 68
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=32.06 E-value=1.7e+02 Score=25.86 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=25.3
Q ss_pred EEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcC
Q 015881 127 CIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA 161 (399)
Q Consensus 127 IIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~ 161 (399)
|-....++.. +..+++..++++||+++|++....
T Consensus 99 i~~~~~~~~~-~l~~~l~~f~~~~P~i~i~l~~~~ 132 (306)
T 3fzv_A 99 IGCFETVAPL-YLPGLIAGFRQAYPGVEIRIRDGE 132 (306)
T ss_dssp EEEEGGGHHH-HHHHHHHHHHHHCTTEEEEEEEEC
T ss_pred EEechhhhHH-HHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3344555554 456899999999999999987754
No 69
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=31.51 E-value=48 Score=29.11 Aligned_cols=43 Identities=23% Similarity=0.201 Sum_probs=36.8
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhh
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle 168 (399)
|||++.-++++|=. -+.-+++.|++. +++++++..+..+.++.
T Consensus 6 k~IllgvTGs~aa~-k~~~ll~~L~~~--g~~V~vv~T~~A~~fi~ 48 (175)
T 3qjg_A 6 ENVLICLCGSVNSI-NISHYIIELKSK--FDEVNVIASTNGRKFIN 48 (175)
T ss_dssp CEEEEEECSSGGGG-GHHHHHHHHTTT--CSEEEEEECTGGGGGSC
T ss_pred CEEEEEEeCHHHHH-HHHHHHHHHHHC--CCEEEEEECcCHHHHhh
Confidence 79999999999966 577889999986 89999999998876654
No 70
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=31.30 E-value=2e+02 Score=25.64 Aligned_cols=95 Identities=21% Similarity=0.313 Sum_probs=55.8
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcC-CchHhh--hcCCCCCEEEEecCCCCCCChHHH-HHHHHH
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA-RGKQTF--ELNKNVRWANVYDLDDDWPEPAEY-TDILGV 197 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~-~~~~ll--e~nP~ID~Vi~~d~k~~~~~~~~~-~~l~~~ 197 (399)
+|||.|+-.+. |+. +.+++++|++..-+++|..++.. ...++. ...-+|. ++.+++++ +.+..++ -.++..
T Consensus 3 m~ki~vl~sG~-g~~--~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~gIp-~~~~~~~~-~~~~~~~~~~~~~~ 77 (212)
T 3av3_A 3 MKRLAVFASGS-GTN--FQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVP-AFVFSPKD-YPSKAAFESEILRE 77 (212)
T ss_dssp CEEEEEECCSS-CHH--HHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTTCC-EEECCGGG-SSSHHHHHHHHHHH
T ss_pred CcEEEEEEECC-cHH--HHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcCCC-EEEeCccc-ccchhhhHHHHHHH
Confidence 56877765444 663 66889999877556788777643 333443 2223554 34444322 2232233 257788
Q ss_pred hhhCCCcEEEEcCC-CChHHHHHHH
Q 015881 198 MKNRYYDMVLSTKL-AGLGHAAFLF 221 (399)
Q Consensus 198 LR~~~YDlvIdl~~-~~~rsAll~~ 221 (399)
|++.+.|++|...- ..+...++..
T Consensus 78 l~~~~~Dliv~a~y~~il~~~~l~~ 102 (212)
T 3av3_A 78 LKGRQIDWIALAGYMRLIGPTLLSA 102 (212)
T ss_dssp HHHTTCCEEEESSCCSCCCHHHHHH
T ss_pred HHhcCCCEEEEchhhhhCCHHHHhh
Confidence 99999999998753 2244455544
No 71
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=31.20 E-value=1.1e+02 Score=26.81 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=35.2
Q ss_pred cCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecC
Q 015881 129 ISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDL 181 (399)
Q Consensus 129 r~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~ 181 (399)
-...++. .+..+++..++++||+++|++.+......+.++ .+|=+|....
T Consensus 94 ~~~~~~~-~~l~~~l~~f~~~~P~v~i~~~~~~~~~~l~~~--~~Dl~i~~~~ 143 (300)
T 3mz1_A 94 TASAFAN-LVIIPALPEFHKKYPDIQIDLGVSDRTIDYLAE--NVDCAIRAGT 143 (300)
T ss_dssp ECHHHHH-HTHHHHHHHHHHHCTTEEEEEEECCCC--CCCT--TCCEEEEESS
T ss_pred ecHHHHH-HHHHHHHHHHHHHCCCcEEEEEeCCCccccccc--CCcEEEEecc
Confidence 3444444 455789999999999999999886666665554 4887877654
No 72
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=31.15 E-value=74 Score=28.08 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=27.9
Q ss_pred CccEEEEEcCCCh-h----HHHhHHHHHHHHHHHCCCcEEEEEE
Q 015881 121 DVRRCCCIISGGV-Y----ENLLFFPAIQLLKDRYPGVLIDVIA 159 (399)
Q Consensus 121 ~v~rILIIr~~~I-G----DvVLttPalraLK~~yP~A~IdvLv 159 (399)
.|||||||.-+-- | -.-|+--+++.+++++|+++|+++-
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~d 46 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELD 46 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3689999965544 2 1234456788999999999998764
No 73
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=31.05 E-value=1.2e+02 Score=28.97 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=41.1
Q ss_pred ccCCccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCCCCCChHHHHHHHHH
Q 015881 118 IRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGV 197 (399)
Q Consensus 118 ~~~~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~~~~~~~~~~l~~~ 197 (399)
+.+..|||||+=-+.+|- ++++.|.+.+ +|++.... ...+-+..+.+. .+.+|-.+ . -.+...
T Consensus 12 ~~g~~mkilvlGaG~vG~-----~~~~~L~~~~---~v~~~~~~-~~~~~~~~~~~~-~~~~d~~d----~---~~l~~~ 74 (365)
T 3abi_A 12 IEGRHMKVLILGAGNIGR-----AIAWDLKDEF---DVYIGDVN-NENLEKVKEFAT-PLKVDASN----F---DKLVEV 74 (365)
T ss_dssp ----CCEEEEECCSHHHH-----HHHHHHTTTS---EEEEEESC-HHHHHHHTTTSE-EEECCTTC----H---HHHHHH
T ss_pred ccCCccEEEEECCCHHHH-----HHHHHHhcCC---CeEEEEcC-HHHHHHHhccCC-cEEEecCC----H---HHHHHH
Confidence 445579999997777775 4567787653 56554322 222223334443 34455322 2 233334
Q ss_pred hhhCCCcEEEEcCCC
Q 015881 198 MKNRYYDMVLSTKLA 212 (399)
Q Consensus 198 LR~~~YDlvIdl~~~ 212 (399)
+ ++.|+||++-+.
T Consensus 75 ~--~~~DvVi~~~p~ 87 (365)
T 3abi_A 75 M--KEFELVIGALPG 87 (365)
T ss_dssp H--TTCSEEEECCCG
T ss_pred H--hCCCEEEEecCC
Confidence 4 358999998765
No 74
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=30.43 E-value=54 Score=28.68 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHhhhCC---CEEEeCCchhHHHHHHHHhcCCCCceeecCCccccc
Q 015881 334 SLLPIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDDASIVFITTPGQVRMS 388 (399)
Q Consensus 334 KrWP~e~faeLa~~L~~~~---~VvliGgp~E~e~aeeI~~~~~~~~~i~~~G~ls~~ 388 (399)
|.|..+.||+.++.+...+ -+++|||+. .+.+++.+.+... + .-|++|+.
T Consensus 81 k~~sS~~fA~~l~~~~~~G~~~i~FvIGGa~--Gl~~~v~~rA~~~--l-SlS~mTfp 133 (167)
T 1to0_A 81 KMKTSEELADTIDKLATYGKSKVTFVIGGSL--GLSDTVMKRADEK--L-SFSKMTFP 133 (167)
T ss_dssp EECCHHHHHHHHHHHHTTTCCEEEEEECCSS--CCCHHHHHHCSEE--E-ESCSSCCC
T ss_pred CcCCHHHHHHHHHHHHhcCCceEEEEEECCC--CCCHHHHHhhCcE--E-EccCCCCc
Confidence 5699999999999887654 457888886 2333444444321 2 33455554
No 75
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=30.19 E-value=3.8e+02 Score=26.29 Aligned_cols=41 Identities=5% Similarity=0.062 Sum_probs=37.4
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCC
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASAR 162 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~ 162 (399)
.++|+++-...-|.+.-.+.+.+.|.++-+++.|++++.+.
T Consensus 7 ~~hvv~~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~ 47 (456)
T 2c1x_A 7 NPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQ 47 (456)
T ss_dssp CCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHH
T ss_pred CCEEEEEcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCch
Confidence 47999999999999999999999999998899999998764
No 76
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=29.99 E-value=88 Score=31.99 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=69.0
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhh---hcC---CCC-------CEEEEecCCCCCCCh
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTF---ELN---KNV-------RWANVYDLDDDWPEP 188 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~ll---e~n---P~I-------D~Vi~~d~k~~~~~~ 188 (399)
-.|++|+-..+.|=.+|..=+++...+++++..|-.++..+..++- +.. ..+ +-++++...+. .-.
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~-p~~ 231 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNE-PPG 231 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTS-CHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCC-CHH
Confidence 3799999999999999999999998888899999999999887653 222 223 35666665443 111
Q ss_pred HH------HHHHHHHhhh-CCCcEEEEcCCCChHHHH
Q 015881 189 AE------YTDILGVMKN-RYYDMVLSTKLAGLGHAA 218 (399)
Q Consensus 189 ~~------~~~l~~~LR~-~~YDlvIdl~~~~~rsAl 218 (399)
.+ -+.+...+|. +.+|++|-+.+- .|.|-
T Consensus 232 ~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi-tR~A~ 267 (482)
T 2ck3_D 232 ARARVALTGLTVAEYFRDQEGQDVLLFIDNI-FRFTQ 267 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCEEEEEECT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccH-HHHHH
Confidence 11 1356677999 899999988877 65543
No 77
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=29.95 E-value=41 Score=29.05 Aligned_cols=50 Identities=4% Similarity=-0.147 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHhhhCC--CEEEeCCchhHHHHHHHHhcCCCCceeecCCccccc
Q 015881 334 SLLPIQVWAEIANGLREFR--PLFVIPHEKEREGVEDVVGDDASIVFITTPGQVRMS 388 (399)
Q Consensus 334 KrWP~e~faeLa~~L~~~~--~VvliGgp~E~e~aeeI~~~~~~~~~i~~~G~ls~~ 388 (399)
|.|..+.||+.++.+...+ -++++||+.- +.+++.+.+.. .-.-|++|+.
T Consensus 77 k~~sS~~fA~~l~~~~~~g~~i~FvIGG~~G--l~~~v~~rA~~---~lSlS~mT~p 128 (155)
T 1ns5_A 77 KPWDTPQLAAELERWKLDGRDVSLLIGGPEG--LSPACKAAAEQ---SWSLSALTLP 128 (155)
T ss_dssp ECCCHHHHHHHHHHHHHHCSCEEEEECBTTB--CCHHHHHHCSE---EECCCSSCCC
T ss_pred CcCCHHHHHHHHHHHHhcCCeEEEEEECCCC--CCHHHHHhhCc---eEEccCCCCc
Confidence 6799999999999886554 4577888862 33344444332 1134555554
No 78
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=29.77 E-value=56 Score=29.53 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=37.9
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhh
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle 168 (399)
.|||+|.-++++|=.- +.-+++.|+++ +++|++++.+.++.++.
T Consensus 4 ~k~IllgvTGaiaa~k-~~~ll~~L~~~--g~eV~vv~T~~A~~fi~ 47 (209)
T 3zqu_A 4 PERITLAMTGASGAQY-GLRLLDCLVQE--EREVHFLISKAAQLVMA 47 (209)
T ss_dssp CSEEEEEECSSSCHHH-HHHHHHHHHHT--TCEEEEEECHHHHHHHH
T ss_pred CCEEEEEEECHHHHHH-HHHHHHHHHHC--CCEEEEEECccHHHHHH
Confidence 4899999999999554 78889999987 89999999998887764
No 79
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=28.82 E-value=2.1e+02 Score=25.24 Aligned_cols=58 Identities=12% Similarity=0.070 Sum_probs=33.2
Q ss_pred ccEEEEEcC------CChhHHHhHHHHHHHHHHHCCCcEEEEEEcC-C--------chHhhhcCCCCCEEEEe
Q 015881 122 VRRCCCIIS------GGVYENLLFFPAIQLLKDRYPGVLIDVIASA-R--------GKQTFELNKNVRWANVY 179 (399)
Q Consensus 122 v~rILIIr~------~~IGDvVLttPalraLK~~yP~A~IdvLv~~-~--------~~~lle~nP~ID~Vi~~ 179 (399)
.+||++|.. +.-...--.--..+++++..++.++.++... . ...+++.+|.++-|++.
T Consensus 135 ~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 207 (304)
T 3gbv_A 135 DREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITF 207 (304)
T ss_dssp CSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEES
T ss_pred CCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 378888863 2222233445677788888788776655321 1 23445555666666654
No 80
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=28.65 E-value=51 Score=29.76 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=32.0
Q ss_pred ccEEEEEcCCChhHHHh-HHHHHHHHHHHCCCcEEEEEEcCCchHhhh
Q 015881 122 VRRCCCIISGGVYENLL-FFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (399)
Q Consensus 122 v~rILIIr~~~IGDvVL-ttPalraLK~~yP~A~IdvLv~~~~~~lle 168 (399)
.+||++.-+++++ ..- +.-+++.|++. +++|++++.+.++.++.
T Consensus 5 ~k~IllgiTGsia-ayk~~~~ll~~L~~~--g~eV~vv~T~~A~~vl~ 49 (207)
T 3mcu_A 5 GKRIGFGFTGSHC-TYEEVMPHLEKLIAE--GAEVRPVVSYTVQSTNT 49 (207)
T ss_dssp TCEEEEEECSCGG-GGTTSHHHHHHHHHT--TCEEEEEECC-------
T ss_pred CCEEEEEEEChHH-HHHHHHHHHHHHHhC--CCEEEEEEehHHHHHHH
Confidence 4799999999964 555 88999999997 89999999998875554
No 81
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=28.14 E-value=2.9e+02 Score=27.27 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=47.0
Q ss_pred CCccEEEEEcCCCh--hHHHhHHHHHHHHHHHCCCcEEEEEEcCC--c---hHhhhcCCCCCEEEEecCCCCCCChHHHH
Q 015881 120 GDVRRCCCIISGGV--YENLLFFPAIQLLKDRYPGVLIDVIASAR--G---KQTFELNKNVRWANVYDLDDDWPEPAEYT 192 (399)
Q Consensus 120 ~~v~rILIIr~~~I--GDvVLttPalraLK~~yP~A~IdvLv~~~--~---~~lle~nP~ID~Vi~~d~k~~~~~~~~~~ 192 (399)
+..|||+++....- |=.-+..++++.|...-.+.+|++++... . ..-++... .++.+. . . ...
T Consensus 203 ~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~-~---~~~ 272 (568)
T 2vsy_A 203 KGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQAS---TLHDVT---A-L---GHL 272 (568)
T ss_dssp SSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTS---EEEECT---T-C---CHH
T ss_pred CCCeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECCCCCccHHHHHHHhcC---eEEECC---C-C---CHH
Confidence 44689999976542 22234457777731112367888877532 1 12233322 333322 1 1 235
Q ss_pred HHHHHhhhCCCcEEEEcCCC
Q 015881 193 DILGVMKNRYYDMVLSTKLA 212 (399)
Q Consensus 193 ~l~~~LR~~~YDlvIdl~~~ 212 (399)
.+.+.+|+.++|++++..+.
T Consensus 273 ~l~~~i~~~~~Div~~~~~~ 292 (568)
T 2vsy_A 273 ATAKHIRHHGIDLLFDLRGW 292 (568)
T ss_dssp HHHHHHHHTTCSEEEECSSC
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 67788999999999987543
No 82
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=27.20 E-value=1.4e+02 Score=26.26 Aligned_cols=37 Identities=5% Similarity=-0.022 Sum_probs=25.4
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcC
Q 015881 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA 161 (399)
Q Consensus 124 rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~ 161 (399)
+|=|-....++.. +..+++..++++||+++|++....
T Consensus 92 ~l~Ig~~~~~~~~-~l~~~l~~f~~~~P~i~l~~~~~~ 128 (294)
T 1ixc_A 92 ELSVAYFGTPIYR-SLPLLLRAFLTSTPTATVSLTHMT 128 (294)
T ss_dssp EEEEEECSGGGGT-HHHHHHHHHHHHCTTEEEEEEECC
T ss_pred eEEEEEccchhHH-HHHHHHHHHHHHCCCcEEEEEeCC
Confidence 3444445555543 345889999999999998887643
No 83
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=27.04 E-value=2.5e+02 Score=24.25 Aligned_cols=79 Identities=9% Similarity=0.078 Sum_probs=54.0
Q ss_pred CCccEEEEE--cCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhc-CC---CCCEEEEecCCCCCCChHHHHH
Q 015881 120 GDVRRCCCI--ISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFEL-NK---NVRWANVYDLDDDWPEPAEYTD 193 (399)
Q Consensus 120 ~~v~rILII--r~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~-nP---~ID~Vi~~d~k~~~~~~~~~~~ 193 (399)
...||+||+ ++--==-+=++.=+...||++ +.++.+..+|.+..+++- .| ||+++..+| +
T Consensus 4 ~~~m~~LilLGCPE~Pvq~p~~lYl~~~Lk~~--G~~v~VA~npAAlkLlevaDPe~~Y~~~~~diD------------~ 69 (157)
T 1kjn_A 4 ESTGKALMVLGCPESPVQIPLAIYTSHKLKKK--GFRVTVTANPAALRLVQVADPEGIYTDEMVDLE------------S 69 (157)
T ss_dssp --CCEEEEECCCSCSTTHHHHHHHHHHHHHHT--TCEEEEEECHHHHHHHHHHSTTCCSCSEEEEHH------------H
T ss_pred ccceeeeEEecCCCCcchhhHHHHHHHHHHhc--CCeeEEecCHHHHhheeccCCCcchhcceeeHH------------H
Confidence 345888887 333333344455567788888 889999999999888874 34 777776554 2
Q ss_pred HHHHhhhCCCcEEEEcCCC
Q 015881 194 ILGVMKNRYYDMVLSTKLA 212 (399)
Q Consensus 194 l~~~LR~~~YDlvIdl~~~ 212 (399)
-++.+-.+.||++|.|-.+
T Consensus 70 ~l~~i~e~~~d~~~~FvHN 88 (157)
T 1kjn_A 70 CINELAEGDYEFLAGFVPN 88 (157)
T ss_dssp HHHHCCTTSCSEEEEEESS
T ss_pred HHhhhhhcCCCEEEEEEec
Confidence 3455555789999987555
No 84
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=26.72 E-value=1.1e+02 Score=27.51 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=28.5
Q ss_pred CCccEEEEEcCCCh--h----HHHhHHHHHHHHHHHCCCc-EEEEEE
Q 015881 120 GDVRRCCCIISGGV--Y----ENLLFFPAIQLLKDRYPGV-LIDVIA 159 (399)
Q Consensus 120 ~~v~rILIIr~~~I--G----DvVLttPalraLK~~yP~A-~IdvLv 159 (399)
|.|||||+|.-+-- | -.-|+--+++.++++.|+. +|+++-
T Consensus 2 ~~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~id 48 (223)
T 3u7i_A 2 NAMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQIN 48 (223)
T ss_dssp -CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred CccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 45799999966544 1 1234456788899999999 888774
No 85
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=25.30 E-value=1.2e+02 Score=27.26 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=24.2
Q ss_pred cCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcC
Q 015881 129 ISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA 161 (399)
Q Consensus 129 r~~~IGDvVLttPalraLK~~yP~A~IdvLv~~ 161 (399)
-...++. .+..+++..++++||+++|++....
T Consensus 96 ~~~~~~~-~~l~~~l~~f~~~~P~v~i~l~~~~ 127 (312)
T 2h9b_A 96 FVGSLLF-GLLPRIIHLYRQAHPNLRIELYEMG 127 (312)
T ss_dssp ECGGGGG-TTHHHHHHHHHHTCTTCEEEEEECC
T ss_pred echhhhH-hhHHHHHHHHHHHCCCcEEEEEeCC
Confidence 3445554 4557899999999999999987643
No 86
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=25.22 E-value=1.7e+02 Score=29.98 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=59.1
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCc-h-------HhhhcCCCCCEEEEecCCCCCCChHHHHH
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG-K-------QTFELNKNVRWANVYDLDDDWPEPAEYTD 193 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~-~-------~lle~nP~ID~Vi~~d~k~~~~~~~~~~~ 193 (399)
-+|+.|. ||-.+..++.+.|.+. +.++..++.... . ++++..|+-....+++.. ....
T Consensus 364 GKrvaI~-----gd~~~~~~la~fL~el--Gm~vv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~-------D~~~ 429 (523)
T 3u7q_B 364 GKRFALW-----GDPDFVMGLVKFLLEL--GCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIGK-------DLWH 429 (523)
T ss_dssp TCEEEEE-----CSHHHHHHHHHHHHHT--TCEEEEEEETTCCHHHHHHHHHHHHTSGGGTTCEEEESC-------CHHH
T ss_pred CCEEEEE-----CCchHHHHHHHHHHHc--CCEEEEEEeCCCCHHHHHHHHHHHhhccCCCCcEEEECC-------CHHH
Confidence 4888886 7889999999999863 888777764432 2 356655542111122221 2356
Q ss_pred HHHHhhhCCCcEEEEcCCCChHHHHHHHHh-------CCC-eEEEec
Q 015881 194 ILGVMKNRYYDMVLSTKLAGLGHAAFLFMT-------TAR-DRVSYI 232 (399)
Q Consensus 194 l~~~LR~~~YDlvIdl~~~~~rsAll~~Ls-------gA~-~RIGy~ 232 (399)
+.+.+++.+.|++|--... ..++.-. |+| .|+||-
T Consensus 430 l~~~i~~~~pDLlig~s~~----k~~a~~~~~~~~~~giP~irigfP 472 (523)
T 3u7q_B 430 LRSLVFTDKPDFMIGNSYG----KFIQRDTLHKGKEFEVPLIRIGFP 472 (523)
T ss_dssp HHHHHHHTCCSEEEECTTH----HHHHHHHHHHCGGGCCCEEECSSC
T ss_pred HHHHHHhcCCCEEEECccH----HHHHHHhhcccccCCCceEEecCC
Confidence 6777888899999965433 2344444 777 566765
No 87
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=25.14 E-value=3.1e+02 Score=25.80 Aligned_cols=76 Identities=11% Similarity=0.024 Sum_probs=46.5
Q ss_pred CCccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhh
Q 015881 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMK 199 (399)
Q Consensus 120 ~~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~~~~~~~~~~l~~~LR 199 (399)
...|||||+-.+.+ ...+++++++. +.++..+......+.. ...|+++..+.. .. -.++..++
T Consensus 9 ~~~~~ili~g~g~~-----~~~~~~a~~~~--G~~v~~~~~~~~~~~~---~~~d~~~~~~~~----d~---~~l~~~~~ 71 (391)
T 1kjq_A 9 PAATRVMLLGSGEL-----GKEVAIECQRL--GVEVIAVDRYADAPAM---HVAHRSHVINML----DG---DALRRVVE 71 (391)
T ss_dssp TTCCEEEEESCSHH-----HHHHHHHHHTT--TCEEEEEESSTTCGGG---GGSSEEEECCTT----CH---HHHHHHHH
T ss_pred CCCCEEEEECCCHH-----HHHHHHHHHHc--CCEEEEEECCCCCchh---hhccceEECCCC----CH---HHHHHHHH
Confidence 34689999966543 45668888875 5677666543332222 234677666532 22 24555566
Q ss_pred hCCCcEEEEcCCC
Q 015881 200 NRYYDMVLSTKLA 212 (399)
Q Consensus 200 ~~~YDlvIdl~~~ 212 (399)
+.+.|+++.....
T Consensus 72 ~~~~d~v~~~~e~ 84 (391)
T 1kjq_A 72 LEKPHYIVPEIEA 84 (391)
T ss_dssp HHCCSEEEECSSC
T ss_pred HcCCCEEEECCCc
Confidence 6789999987655
No 88
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=24.46 E-value=4e+02 Score=24.60 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=47.4
Q ss_pred CccEEEEE-cCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCc------------hHhhhcC-CCCCEEEEecCCCCCC
Q 015881 121 DVRRCCCI-ISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG------------KQTFELN-KNVRWANVYDLDDDWP 186 (399)
Q Consensus 121 ~v~rILII-r~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~------------~~lle~n-P~ID~Vi~~d~k~~~~ 186 (399)
..|+|||. -.++||=. +++.|.+...+.+|..+..... ....... ..+ .++..|..+
T Consensus 9 ~~~~vlVTGatG~IG~~-----l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~d--- 79 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSN-----LAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKG-EVIAADINN--- 79 (362)
T ss_dssp TTCEEEEETTTSHHHHH-----HHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCS-EEEECCTTC---
T ss_pred CCCEEEEECCCCHHHHH-----HHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCc-eEEECCCCC---
Confidence 35899999 77888865 4677777666899999986433 1111111 222 455555432
Q ss_pred ChHHHHHHHHHhhhCCCcEEEEcCC
Q 015881 187 EPAEYTDILGVMKNRYYDMVLSTKL 211 (399)
Q Consensus 187 ~~~~~~~l~~~LR~~~YDlvIdl~~ 211 (399)
... +..+...+.|+||.+-+
T Consensus 80 -~~~----~~~~~~~~~D~vih~A~ 99 (362)
T 3sxp_A 80 -PLD----LRRLEKLHFDYLFHQAA 99 (362)
T ss_dssp -HHH----HHHHTTSCCSEEEECCC
T ss_pred -HHH----HHHhhccCCCEEEECCc
Confidence 222 33335578999998765
No 89
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=24.23 E-value=2.2e+02 Score=24.64 Aligned_cols=54 Identities=9% Similarity=-0.038 Sum_probs=33.1
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhh--cCCCCCEEEEec
Q 015881 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE--LNKNVRWANVYD 180 (399)
Q Consensus 124 rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle--~nP~ID~Vi~~d 180 (399)
+|-|--...++ . +..++++.++++||+++|.+..... .++++ .+-.+|=++...
T Consensus 29 ~l~Ig~~~~~~-~-~l~~~l~~f~~~~P~i~v~i~~~~~-~~~~~~l~~g~~Di~i~~~ 84 (290)
T 1twy_A 29 EITISGSTSVA-R-IMDVLAEKYNQQHPETYVAVQGVGS-TAGISLLKKGVADIAMTSR 84 (290)
T ss_dssp EEEEEECHHHH-H-HHHHHHHHHHHHCTTCEEEEEESCH-HHHHHHHHTTSCSEEEESS
T ss_pred CEEEecCcchH-H-HHHHHHHHHHhhCCCceEEEEecCc-HHHHHHHhcCCCcEEEecC
Confidence 33343444556 3 5668999999999999999876543 22221 123466666543
No 90
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=23.70 E-value=1.1e+02 Score=31.25 Aligned_cols=109 Identities=13% Similarity=0.091 Sum_probs=75.1
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHh---hhc---CCCC--------CEEEEecCCCCC---
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQT---FEL---NKNV--------RWANVYDLDDDW--- 185 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~l---le~---nP~I--------D~Vi~~d~k~~~--- 185 (399)
.|++|+-..+.|=.+|..=+++.+.++++++.|-.++..+..++ ++. ...+ +-|+++...+.-
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~ 245 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGA 245 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHH
Confidence 79999999999999999999999888889999999999988765 222 2223 356666654431
Q ss_pred --CChHHHHHHHHHhhh-CCCcEEEEcCCCChHHHHH-----HHHhCCCeEEEec
Q 015881 186 --PEPAEYTDILGVMKN-RYYDMVLSTKLAGLGHAAF-----LFMTTARDRVSYI 232 (399)
Q Consensus 186 --~~~~~~~~l~~~LR~-~~YDlvIdl~~~~~rsAll-----~~LsgA~~RIGy~ 232 (399)
..+.--+.+...+|. +.+|++|-+.+- .|.|-. +.+-..|-+.||.
T Consensus 246 R~~~~~~altiAEyfrd~~G~dVLl~~Dsi-tR~A~A~rEvs~~lge~Ps~~GYp 299 (498)
T 1fx0_B 246 RMRVGLTALTMAEYFRDVNEQDVLLFIDNI-FRFVQAGSEVSALLGRMPSAVGYQ 299 (498)
T ss_dssp HTTHHHHHHHTHHHHTTTSCCEEEEEEECS-HHHHHHHHHHHHHHTCCCCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeccH-HHHHHHHHHHHhhcCCCCccccCC
Confidence 011112346677999 899999988877 655432 2233345566664
No 91
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=23.31 E-value=1.5e+02 Score=26.84 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=26.2
Q ss_pred EEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcC
Q 015881 125 CCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA 161 (399)
Q Consensus 125 ILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~ 161 (399)
|=|-....++. .+..+++..++++||+++|++....
T Consensus 92 l~Ig~~~~~~~-~~l~~~l~~f~~~~P~v~l~l~~~~ 127 (313)
T 2h98_A 92 LRIGYVSSLLY-GLLPEIIYLFRQQNPEIHIELIECG 127 (313)
T ss_dssp EEEEECGGGGG-TTHHHHHHHHHHHCTTSEEEEEECC
T ss_pred EEEEechHhHH-hHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 33334455665 3567899999999999999987644
No 92
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=23.29 E-value=1.9e+02 Score=24.55 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=40.6
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhc-----CCCCCEEEEecC
Q 015881 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFEL-----NKNVRWANVYDL 181 (399)
Q Consensus 124 rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~-----nP~ID~Vi~~d~ 181 (399)
.++.+-.+|=|+.....|++..|.+.||++.+..+-.....++.+. ...|=-++.++.
T Consensus 57 vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~ 119 (167)
T 1z6n_A 57 RLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDE 119 (167)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECT
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECC
Confidence 4666778999999999999999999999877776654444444332 234445555654
No 93
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=23.15 E-value=16 Score=34.99 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=29.0
Q ss_pred CccEEEEEcCCC-hhH-HHhHHHHHHHHHHHCCCcEEEEEEcCCchH
Q 015881 121 DVRRCCCIISGG-VYE-NLLFFPAIQLLKDRYPGVLIDVIASARGKQ 165 (399)
Q Consensus 121 ~v~rILIIr~~~-IGD-vVLttPalraLK~~yP~A~IdvLv~~~~~~ 165 (399)
..||||++.... .|- .....-+++.|+++ +.++++++......
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~--G~~v~v~~~~~~~~ 83 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRSI--GIEARWFVIEGPTE 83 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHHT--TCEEEEEECCCCHH
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHhC--CCeEEEEEccCCcc
Confidence 359999997764 333 33444577888876 77899888665443
No 94
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=22.91 E-value=45 Score=29.74 Aligned_cols=43 Identities=12% Similarity=0.025 Sum_probs=36.7
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhh
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTF 167 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~ll 167 (399)
.+||++.-.+++|-. -+.-+++.|++. +++|+++..+..+.++
T Consensus 8 ~k~IllgvTGs~aa~-k~~~l~~~L~~~--g~~V~vv~T~~A~~fi 50 (194)
T 1p3y_1 8 DKKLLIGICGSISSV-GISSYLLYFKSF--FKEIRVVMTKTAEDLI 50 (194)
T ss_dssp GCEEEEEECSCGGGG-GTHHHHHHHTTT--SSEEEEEECHHHHHHS
T ss_pred CCEEEEEEECHHHHH-HHHHHHHHHHHC--CCEEEEEEchhHHHHH
Confidence 379999999999987 577899999875 8999999998877664
No 95
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=22.17 E-value=82 Score=28.16 Aligned_cols=45 Identities=11% Similarity=0.100 Sum_probs=37.4
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhh
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle 168 (399)
.+||++--++++|=.=-+.-+++.|++. +++|++++.+.++.++.
T Consensus 7 ~k~I~lgiTGs~aa~~k~~~ll~~L~~~--g~eV~vv~T~~A~~~i~ 51 (201)
T 3lqk_A 7 GKHVGFGLTGSHCTYHEVLPQMERLVEL--GAKVTPFVTHTVQTTDT 51 (201)
T ss_dssp TCEEEEECCSCGGGGGGTHHHHHHHHHT--TCEEEEECSSCSCCTTC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHhhC--CCEEEEEEChhHHHHHH
Confidence 4899999999965332788999999997 89999999998887764
No 96
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=21.81 E-value=1.2e+02 Score=30.15 Aligned_cols=107 Identities=7% Similarity=0.040 Sum_probs=64.4
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCC--chHhhhc-----CCCCCEEEEecCCC--CC---CChH
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASAR--GKQTFEL-----NKNVRWANVYDLDD--DW---PEPA 189 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~--~~~lle~-----nP~ID~Vi~~d~k~--~~---~~~~ 189 (399)
.++|+++-...-|++.-.+.+.+.|.++ ++.+|++++.+. ..+.++. .+.|+ .+.++... .. ....
T Consensus 6 ~~~vl~~p~p~~GHv~P~l~La~~L~~r-~Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~i~-~~~l~~~~~~~~~~~~~~~ 83 (480)
T 2vch_A 6 TPHVAIIPSPGMGHLIPLVEFAKRLVHL-HGLTVTFVIAGEGPPSKAQRTVLDSLPSSIS-SVFLPPVDLTDLSSSTRIE 83 (480)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHHHHHH-HCCEEEEEECCSSSCC-CHHHHHC-CCTTEE-EEECCCCCCTTSCTTCCHH
T ss_pred CcEEEEecCcchhHHHHHHHHHHHHHhC-CCCEEEEEECCCcchhhhhhhhccccCCCce-EEEcCCCCCCCCCCchhHH
Confidence 4799999999999999999999999986 377999998776 3333332 23443 33333210 00 1111
Q ss_pred H------------HHHHHHHh-hhCCC-cEEEEcCCCChHHHHHHHHhCCCeEEEec
Q 015881 190 E------------YTDILGVM-KNRYY-DMVLSTKLAGLGHAAFLFMTTARDRVSYI 232 (399)
Q Consensus 190 ~------------~~~l~~~L-R~~~Y-DlvIdl~~~~~rsAll~~LsgA~~RIGy~ 232 (399)
. +.++++.+ ...++ |++|.=... .....++...|+|. +.+.
T Consensus 84 ~~~~~~~~~~~~~l~~ll~~~~~~~~~pd~vI~D~~~-~~~~~vA~~lgiP~-v~~~ 138 (480)
T 2vch_A 84 SRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFG-TDAFDVAVEFHVPP-YIFY 138 (480)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHTTCCCSEEEECTTC-GGGHHHHHHTTCCE-EEEE
T ss_pred HHHHHHHHhhhHHHHHHHHHhccCCCCCeEEEECCcc-hhHHHHHHHcCCCE-EEEE
Confidence 1 11223333 12579 988853333 23456778889884 4443
No 97
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=21.74 E-value=1.8e+02 Score=27.19 Aligned_cols=76 Identities=11% Similarity=0.030 Sum_probs=47.9
Q ss_pred ccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcC-CchHhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhhh
Q 015881 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA-RGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKN 200 (399)
Q Consensus 122 v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~-~~~~lle~nP~ID~Vi~~d~k~~~~~~~~~~~l~~~LR~ 200 (399)
-.+|||+-.+.||= -+++.+|..+|+++|..++.. .-.++++.. ..|+++.+... ..++.++..
T Consensus 171 g~~VlV~GaG~vG~-----~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l-Ga~~vi~~~~~---------~~~~~~~~~ 235 (344)
T 2h6e_A 171 EPVVIVNGIGGLAV-----YTIQILKALMKNITIVGISRSKKHRDFALEL-GADYVSEMKDA---------ESLINKLTD 235 (344)
T ss_dssp SCEEEEECCSHHHH-----HHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-TCSEEECHHHH---------HHHHHHHHT
T ss_pred CCEEEEECCCHHHH-----HHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh-CCCEEeccccc---------hHHHHHhhc
Confidence 46899986666663 346677777899997766633 334555543 35777644210 123455654
Q ss_pred C-CCcEEEEcCCC
Q 015881 201 R-YYDMVLSTKLA 212 (399)
Q Consensus 201 ~-~YDlvIdl~~~ 212 (399)
. .+|++||.-+.
T Consensus 236 g~g~D~vid~~g~ 248 (344)
T 2h6e_A 236 GLGASIAIDLVGT 248 (344)
T ss_dssp TCCEEEEEESSCC
T ss_pred CCCccEEEECCCC
Confidence 4 79999999887
No 98
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=21.04 E-value=1.1e+02 Score=27.82 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=48.9
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCCCCCC-hHHHHHHHHHhhhC
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPE-PAEYTDILGVMKNR 201 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~~~~-~~~~~~l~~~LR~~ 201 (399)
|+|.|+ -+++|. +.+++.|++..|+..+.+++..... |+.. + . +.. .....+.++.|.+.
T Consensus 1 ~~Igvf-DSG~Gg----ltv~~~l~~~~P~~~~iy~~D~~~~------pyG~------~-s-~~~i~~~~~~~~~~L~~~ 61 (254)
T 1b73_A 1 MKIGIF-DSGVGG----LTVLKAIRNRYRKVDIVYLGDTARV------PYGI------R-S-KDTIIRYSLECAGFLKDK 61 (254)
T ss_dssp CEEEEE-ESSSGG----GTHHHHHHHHSTTCEEEEEECTTTC------CCTT------S-C-HHHHHHHHHHHHHHHHTT
T ss_pred CcEEEE-ECCccH----HHHHHHHHHhCCCCcEEEeecCCCC------CCCc------C-C-HHHHHHHHHHHHHHHHHC
Confidence 578887 568895 3599999999999999999877533 3321 0 0 001 12234567778888
Q ss_pred CCcEEEEcCCC
Q 015881 202 YYDMVLSTKLA 212 (399)
Q Consensus 202 ~YDlvIdl~~~ 212 (399)
..|+++..-+.
T Consensus 62 g~d~iviaCnT 72 (254)
T 1b73_A 62 GVDIIVVACNT 72 (254)
T ss_dssp TCSEEEECCHH
T ss_pred CCCEEEEeCch
Confidence 99999987665
No 99
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=21.03 E-value=2.3e+02 Score=25.60 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=30.6
Q ss_pred CCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhh--cCCCCCEEEEe
Q 015881 130 SGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE--LNKNVRWANVY 179 (399)
Q Consensus 130 ~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle--~nP~ID~Vi~~ 179 (399)
...++.. +..|++..++++||+++|++..... ..+++ .+..+|=+|..
T Consensus 100 ~~~~~~~-~l~~~l~~f~~~~P~v~i~l~~~~~-~~~~~~l~~g~~Dlai~~ 149 (324)
T 1al3_A 100 THTQARY-ALPGVIKGFIERYPRVSLHMHQGSP-TQIAEAVSKGNADFAIAT 149 (324)
T ss_dssp CHHHHHH-TSHHHHHHHHHHCTEEEEEEEECCH-HHHHHHHHTTCCSEEEES
T ss_pred chhhhhh-HHHHHHHHHHHHCCCCEEEEEECCH-HHHHHHHHCCCceEEEEe
Confidence 3344433 3458999999999999999887542 22222 23456666655
No 100
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=21.02 E-value=1.5e+02 Score=20.98 Aligned_cols=36 Identities=6% Similarity=-0.092 Sum_probs=31.2
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEE
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVI 158 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvL 158 (399)
|+|++.-..+=+..-.+.|++..|.+.+++..+..+
T Consensus 1 m~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~v 36 (85)
T 1ego_A 1 MQTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYV 36 (85)
T ss_dssp CEEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEE
Confidence 678888888899999999999999999888776655
No 101
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=20.35 E-value=1.1e+02 Score=29.07 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=35.7
Q ss_pred cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEe
Q 015881 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY 179 (399)
Q Consensus 123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~ 179 (399)
|||||..... ...+.++.|++.+|+.++.+.-.....++.+....+|-++++
T Consensus 2 mkil~~~~~~-----~~~~~~~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 53 (333)
T 1j4a_A 2 TKIFAYAIRE-----DEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVY 53 (333)
T ss_dssp CEEEECSCCG-----GGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEEC
T ss_pred cEEEEEecCc-----cCHHHHHHHHhhCCCcEEEECCCCCcHHHHHHhcCCcEEEEc
Confidence 7898875433 234568888888999887665443344666667788877775
No 102
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=20.18 E-value=2.1e+02 Score=25.27 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=35.4
Q ss_pred cCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecC
Q 015881 129 ISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDL 181 (399)
Q Consensus 129 r~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~ 181 (399)
....++.. +..+++..++++||+++|.+........+.+ ..+|=+|.+..
T Consensus 99 ~~~~~~~~-~l~~~l~~f~~~~P~v~i~l~~~~~~~~l~~--~~~Dl~i~~~~ 148 (306)
T 3hhg_A 99 SAMPMVLH-LLAPLAAKFNERYPHIRLSLVSSEGYINLIE--RKVDIALRAGE 148 (306)
T ss_dssp BCHHHHHH-THHHHHHHHHHHCTTEEEEEECCSSSHHHHT--TSSSCEEESCC
T ss_pred ccHHHHHH-HHHHHHHHHHHHCCCeEEEEEeccchhhHhh--cCccEEEEeCC
Confidence 34444443 5678999999999999999986655555554 45777776643
Done!