BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015882
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 24 NGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI--AC 81
NG T +H A G E++ L L+ +D TPLH AA NG +++ + A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLL--LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 82 SESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAA 139
++ AK + T L LA ++ ++ K+L+E NA DK G + LHLAA
Sbjct: 59 ADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAA 109
Score = 32.3 bits (72), Expect = 0.49, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 91 DAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAXXXXXXXXXXX 150
+ T L LA ++ ++ K+L+E NA DK G + LHLAA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 151 XEGSSSDIIQIDSKNNQGQTALDICKANSQ 180
E + +++K+ G+T L + N
Sbjct: 55 LEAGAD----VNAKDKNGRTPLHLAARNGH 80
Score = 29.3 bits (64), Expect = 3.7, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 19 STQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIR 77
+ +++NG T +H A G E++ L L+ +D TPLH AA NG +++
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLL--LEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIAC 81
NQNGCT +H A + E+ L L+ +D+ T +HRAA G+ MI +
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVML--LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY 160
Query: 82 SESLAKLT-SDAETALILAVKSSQIDAFKILVEE 114
++ + ++ T L LA +++ K+LV +
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ 194
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIAC 81
NQNGCT +H A + E+ L L+ +D+ T +HRAA G+ MI +
Sbjct: 104 NQNGCTPLHYAASKNRHEIAVML--LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY 161
Query: 82 SESLAKLT-SDAETALILAVKSSQIDAFKILVEE 114
++ + ++ T L LA +++ K+LV +
Sbjct: 162 YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ 195
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIAC 81
NQNGCT +H A + E+ L L+ +D+ T +HRAA G+ M+ +
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVML--LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160
Query: 82 SESLAKLT-SDAETALILAVKSSQIDAFKILV 112
++ + ++ T L LA +++ K LV
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREIAC 81
NQNGCT +H A + E+ L L+ +D+ T +HRAA G+ M+ +
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVML--LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160
Query: 82 SESLAKLT-SDAETALILAVKSSQIDAFKILV 112
++ + ++ T L LA +++ K LV
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 24 NGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIREI--AC 81
NG T +H A G E++ L L+ +D TPLH AA NG +++ + A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLL--LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 82 SESLAKLTSDAETALILAVKSSQIDAFKILVE 113
++ AK + T L LA ++ ++ K+L+E
Sbjct: 59 ADVNAK-DKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 32.3 bits (72), Expect = 0.47, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 91 DAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAXXXXXXXXXXX 150
+ T L LA ++ ++ K+L+E NA DK G + LHLAA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 151 XEGSSSDIIQIDSKNNQGQTALDICKANSQDSV 183
E + +++K+ G+T L + N V
Sbjct: 55 LEAGAD----VNAKDKNGRTPLHLAARNGHLEV 83
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 53 SVVEDNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSD---AETALILAVKSSQIDAFK 109
+ +DNGLT PLH AA NG ++ E L K +D +++A I + + D
Sbjct: 33 NATDDNGLT-PLHLAAANG------QLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHL 85
Query: 110 ILVEETKRHNREHLFNATDKEGNSLLHLAA 139
+VE +H + NA D+ G + LHLAA
Sbjct: 86 EIVEVLLKHGAD--VNAYDRAGWTPLHLAA 113
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 62 TPLHRAAVNGDTGMIRE-IACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHNR 120
TPLH AA NG +++ ++ + + D T L LA K+ + K+L+ +
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD--- 67
Query: 121 EHLFNATDKEGNSLLHLA 138
NA K+GN+ HLA
Sbjct: 68 ---VNARSKDGNTPEHLA 82
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 91 DAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAXXXXXXXXXXX 150
D L+ A ++ Q D +IL+ NA DK+G + LHLAA
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAD------VNAKDKDGYTPLHLAAREGHLEIVEVL 54
Query: 151 XEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILERAA 195
+ + +++++ G+TA DI S D+ + ++ IL++AA
Sbjct: 55 LKAGAD----VNAQDKFGKTAFDI----SIDNGNEDLAEILQKAA 91
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 55 VEDNGLTTPLHRAAVNGDTGMIRE-IACSESLAKLTSDAETALILAVKSSQIDAFKILVE 113
+E +PLH AA G + + ++ + D T L+ A +++ ++A K L++
Sbjct: 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 114 ETKRHNREHLFNATDKEGNSLLHLAA 139
L + D EG++ LHLAA
Sbjct: 66 AGA------LVDPKDAEGSTCLHLAA 85
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
pdb|2NYY|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|B Chain B, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 1295
Score = 32.7 bits (73), Expect = 0.37, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 153 GSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSI 190
G+ S ++ + SKN+QG T + CK N QD+ N+IG I
Sbjct: 1214 GNLSQVVVMKSKNDQGIT--NKCKMNLQDNNGNDIGFI 1249
>pdb|3V0C|A Chain A, 4.3 Angstrom Crystal Structure Of An Inactive BontA
(E224qR363AY366F)
Length = 1312
Score = 32.7 bits (73), Expect = 0.38, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 153 GSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSI 190
G+ S ++ + SKN+QG T + CK N QD+ N+IG I
Sbjct: 1215 GNLSQVVVMKSKNDQGIT--NKCKMNLQDNNGNDIGFI 1250
>pdb|3V0A|A Chain A, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|A Chain A, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1296
Score = 32.7 bits (73), Expect = 0.38, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 153 GSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSI 190
G+ S ++ + SKN+QG T + CK N QD+ N+IG I
Sbjct: 1215 GNLSQVVVMKSKNDQGIT--NKCKMNLQDNNGNDIGFI 1250
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 62 TPLHRAAVNGDTGMIREI--ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHN 119
TPLH AA G ++ + A ++ AK D T L LA + ++ ++L++
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 93
Query: 120 REHLFNATDKEGNSLLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQTALDICKANS 179
NA DK+G + LHLAA + + +++++ G+T D+ N
Sbjct: 94 ----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAQDKFGKTPFDLAIDNG 145
Query: 180 QDSVSNEIGSILERAA 195
+ +I +L++AA
Sbjct: 146 ----NEDIAEVLQKAA 157
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 57 DNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSDAE-------TALILAVKSSQIDAFK 109
DN TPLH AA NG + E L K +D T L LA + ++ +
Sbjct: 44 DNDGYTPLHLAASNG------HLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVE 97
Query: 110 ILVEETKRHNREHLFNATDKEGNSLLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQ 169
+L+ +H + NA D +G++ LHLAA + + +++++ G+
Sbjct: 98 VLL----KHGAD--VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA----DVNAQDKFGK 147
Query: 170 TALDICKANSQDSVS 184
TA DI N + ++
Sbjct: 148 TAFDISIDNGNEDLA 162
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 62 TPLHRAAVNGDTGMIREI--ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHN 119
TPLH AA G ++ + A ++ AK D T L LA + ++ ++L++
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 105
Query: 120 REHLFNATDKEGNSLLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQTALDICKANS 179
NA DK+G + LHLAA + + +++++ G+TA DI N
Sbjct: 106 ----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAQDKFGKTAFDISIDNG 157
Query: 180 QDSVS 184
+ ++
Sbjct: 158 NEDLA 162
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 18 DSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNGDTGMIR 77
D N G T +H A ++GD + L L + V+D+ TPLH A +G ++
Sbjct: 3 DPFTNHRGETLLHIASIKGDIPSVEYL--LQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 78 EIACSESLAKLTS-DAETALILAVKSSQIDAFKILVEETKRHNREHLF 124
+ ++L T ++ L A K+ +D K+L+ N ++F
Sbjct: 61 LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 19/144 (13%)
Query: 4 ELIELAKKDKVQEKDSTQN--------QNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVV 55
E E KD+V KD +N +G T +H A G E++ L +
Sbjct: 10 EAAENGNKDRV--KDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLL--ISKGADVNA 65
Query: 56 EDNGLTTPLHRAAVNGDTGMIR-EIACSESLAKLTSDAETALILAVKSSQIDAFKILVEE 114
+D+ TPLH AA NG +++ I+ + SD T L A ++ + K+L+ +
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 125
Query: 115 TKRHNREHLFNATDKEGNSLLHLA 138
N +D +G + L LA
Sbjct: 126 GAD------VNTSDSDGRTPLDLA 143
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 21/145 (14%)
Query: 4 ELIELAKKDKVQEKDSTQN--------QNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVV 55
E E KD+V KD +N +G T +H A G E++ L L
Sbjct: 10 EAAENGNKDRV--KDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLL--LSQGADPNA 65
Query: 56 EDNGLTTPLHRAAVNGDTGMIREI--ACSESLAKLTSDAETALILAVKSSQIDAFKILVE 113
+D+ TPLH AA NG +++ + ++ AK SD +T L LA ++ + K+L+
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 114 ETKRHNREHLFNATDKEGNSLLHLA 138
+ N +D +G + L LA
Sbjct: 125 QGAD------PNTSDSDGRTPLDLA 143
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 17/143 (11%)
Query: 4 ELIELAKKDKVQE------KDSTQNQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVED 57
E E KD+V++ + + +G T +H A G E++ L L +D
Sbjct: 10 EAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLL--LSKGADPNAKD 67
Query: 58 NGLTTPLHRAAVNGDTGMIREI--ACSESLAKLTSDAETALILAVKSSQIDAFKILVEET 115
+ TPLH AA NG +++ + ++ AK SD T L A ++ + K+L+ +
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAK-DSDGRTPLHYAAENGHKEIVKLLLSKG 126
Query: 116 KRHNREHLFNATDKEGNSLLHLA 138
N +D +G + L LA
Sbjct: 127 AD------PNTSDSDGRTPLDLA 143
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 99 AVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAXXXXXXXXXXXXEGSSSDI 158
A ++ Q+D + L+E N E D EGN LHLAA + ++S+
Sbjct: 77 AARAGQLDTLQTLLEFQADVNIE------DNEGNLPLHLAAKEGHLRVVEFLVKHTASN- 129
Query: 159 IQIDSKNNQGQTALDICKANSQDSV 183
+ +N++G TA D+ + ++ V
Sbjct: 130 --VGHRNHKGDTACDLARLYGRNEV 152
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 27/139 (19%)
Query: 62 TPLHRAAVNGDTGMIREIACSESLAKLTSDAE-------TALILAVKSSQIDAFKILVEE 114
TPLH AA NG + E L K +D T L LA ++ ++L++
Sbjct: 49 TPLHLAAFNG------HLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 115 TKRHNREHLFNATDKEGNSLLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQTALDI 174
NA D EG++ LHLAA + + +++++ G+TA DI
Sbjct: 103 GAD------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD----VNAQDKFGKTAFDI 152
Query: 175 CKANSQDSVSNEIGSILER 193
S D+ + ++ IL++
Sbjct: 153 ----SIDNGNEDLAEILQK 167
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 62 TPLHRAAVNGDTGMIREI--ACSESLAKLTSDAETALILAVKSSQIDAFKILVEETKRHN 119
TPLH AA G ++ + A ++ AK D T L LA + ++ ++L++
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 93
Query: 120 REHLFNATDKEGNSLLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQTALDICKANS 179
NA DK+G + LHLAA + + +++++ G+T D+
Sbjct: 94 ----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAQDKFGKTPFDLAIREG 145
Query: 180 QDSVSNEIGSILERAA 195
+ +I +L++AA
Sbjct: 146 HE----DIAEVLQKAA 157
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 27/145 (18%)
Query: 56 EDNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSD-------AETALILAVKSSQIDAF 108
ED+ TPLH AA+ G + E L K +D +T L LA ++
Sbjct: 43 EDDSGKTPLHLAAIKG------HLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIV 96
Query: 109 KILVEETKRHNREHLFNATDKEGNSLLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQG 168
++L++ NATD G + LHLAA + + +++++ G
Sbjct: 97 EVLLKNGAD------VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD----VNAQDKFG 146
Query: 169 QTALDICKANSQDSVSNEIGSILER 193
+TA DI S D+ + ++ IL++
Sbjct: 147 KTAFDI----SIDNGNEDLAEILQK 167
>pdb|2VU9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
Binding Domain In Complex With Gt1b
pdb|2VUA|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Serotype A
Binding Domain
Length = 444
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 153 GSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSI 190
G+ S ++ + SKN+QG T + CK N QD+ N+IG I
Sbjct: 362 GNLSQVVVMKSKNDQGIT--NKCKMNLQDNNGNDIGFI 397
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 27/144 (18%)
Query: 57 DNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSDAE-------TALILAVKSSQIDAFK 109
DN TTPLH AA +G + E L K +D + T L LA ++ +
Sbjct: 44 DNTGTTPLHLAAYSG------HLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVE 97
Query: 110 ILVEETKRHNREHLFNATDKEGNSLLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQ 169
+L++ NA D +G + LHLAA + + +++++ G+
Sbjct: 98 VLLKNGAD------VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA----DVNAQDKFGK 147
Query: 170 TALDICKANSQDSVSNEIGSILER 193
TA DI S D+ + ++ IL++
Sbjct: 148 TAFDI----SIDNGNEDLAEILQK 167
>pdb|3FUO|A Chain A, The Crystal Structure Of Receptor Binding Domain Of
Botulinum Neurotoxin Serotype A
Length = 426
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 153 GSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSI 190
G+ S ++ + SKN+QG T + CK N QD+ N+IG I
Sbjct: 345 GNLSQVVVMKSKNDQGIT--NKCKMNLQDNNGNDIGFI 380
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 23/135 (17%)
Query: 57 DNGLTTPLHRAAVNGDTGMIREIACSESLAKLTSDAETA-------LILAVKSSQIDAFK 109
DN TPLH AAV+G + E L K +D + A L LA + ++ +
Sbjct: 44 DNTGLTPLHLAAVSG------HLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVE 97
Query: 110 ILVEETKRHNREHLFNATDKEGNSLLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQ 169
+L++ NA D G++ LHLAA + + +++++ G+
Sbjct: 98 VLLKYGAD------VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA----DVNAQDKFGK 147
Query: 170 TALDICKANSQDSVS 184
TA DI N + ++
Sbjct: 148 TAFDISIDNGNEDLA 162
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 88 LTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAXXXXXXXX 147
+ SD L+ A ++ Q D +IL+ A DK G++ LHLAA
Sbjct: 2 MGSDLGKKLLEAARAGQDDEVRILMANGAD------VAAKDKNGSTPLHLAARNGHLEVV 55
Query: 148 XXXXEGSSSDIIQIDSKNNQGQTALDICKANSQDSVS 184
E + +++++ G+TA DI N + ++
Sbjct: 56 KLLLEAGAD----VNAQDKFGKTAFDISIDNGNEDLA 88
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 22 NQNGCTSMHRAPVEGDGEMIHCLGKLDPQTGSVVEDNGLTTPLHRAAVNG 71
+++G T +H A G E++ L K + EDN TPLH AA+ G
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA--EDNFGITPLHLAAIRG 91
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 86 AKLTSDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAXXXXXX 145
+ + SD L+ A ++ Q D +IL+ A DK G++ LHLAA
Sbjct: 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGAD------VAAKDKNGSTPLHLAARNGHLE 71
Query: 146 XXXXXXEGSSSDIIQIDSKNNQGQTALDICKANSQDSVSNEIGSILE 192
E + + +++ G+TA DI S D+ + ++ IL+
Sbjct: 72 VVKLLLEAGAD----VXAQDKFGKTAFDI----SIDNGNEDLAEILQ 110
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 123 LFNATDKEGNSLLHLAAXXXXXXXXXXXXEGSSSDIIQIDSKNNQGQTAL 172
L N TD+ G + LHLAA E S+ IQ +N G+T L
Sbjct: 14 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQ----DNMGRTPL 59
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 99 AVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAAXXXXXXXXXXXXEGSSSDI 158
A ++ +D + L+E N E D EGN LHLAA + ++S+
Sbjct: 77 AARAGFLDTLQTLLENQADVNIE------DNEGNLPLHLAAKEGHLRVVEFLVKHTASN- 129
Query: 159 IQIDSKNNQGQTALDICKANSQDSV 183
+ +N++G TA D+ + ++ V
Sbjct: 130 --VGHRNHKGDTACDLARLYGRNEV 152
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 90 SDAETALILAVKSSQIDAFKILVEETKRHNREHLFNATDKEGNSLLHLAA 139
SD L+ A ++ Q D +IL+ NA D++GN+ LHLAA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD------VNANDRKGNTPLHLAA 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,413,582
Number of Sequences: 62578
Number of extensions: 384650
Number of successful extensions: 855
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 814
Number of HSP's gapped (non-prelim): 77
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)