BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015884
         (398 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 105/228 (46%), Gaps = 10/228 (4%)

Query: 161 KDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLG 220
           K++    RL    A  L  E+  F  + +L   L   V+A  +  + +N +    M  + 
Sbjct: 235 KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMS 292

Query: 221 INAAISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEM 280
           I AA+S+RV ++LG    + A  +  +     L      A++ ++ ++  ++++T+++ +
Sbjct: 293 IGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVV 352

Query: 281 RKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGY-- 338
                 L     I   +++VQ V +G   G      + +     Y+V+GLP G++LG   
Sbjct: 353 VALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTN 412

Query: 339 ---KLKFGVQGIWIGMICGTLLQTLIL---LYIVYKTNWNKEVEQASE 380
              +   G +G W+G I G     L+L   LY + K + + ++  A++
Sbjct: 413 WLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQSDDVQLHLAAK 460


>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
 pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
 pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
           Monobody
 pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
          Length = 459

 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 70/378 (18%), Positives = 152/378 (40%), Gaps = 17/378 (4%)

Query: 3   SALETLCGQAFGAGQVELLGVYMQRSILILFVTCIF-LLPLYIFATPILKLLGQRDDIAE 61
           +AL  +  Q +GAG+    G   ++ I    +  IF ++ ++   TP    L   D +  
Sbjct: 71  AALNPMIAQLYGAGKTGEAGETGRQGIWFGLILGIFGMILMWAAITPFRNWLTLSDYVEG 130

Query: 62  FAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIH----M 117
               + +     M +   +     +  + ++  ++  +  AAFV+++ + Y F++    M
Sbjct: 131 TMAQYMLFTSLAMPAAMVHRALHAYASSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGM 190

Query: 118 LNWGTAGAAAA------YNISALGISIGQMIYVVRYCKDGWKG-LSWLAFKDIWGFVRLS 170
              G AG   A      ++  AL I I +  +   +      G   W  FK IW   ++ 
Sbjct: 191 PALGGAGCGVATMAVFWFSALALWIYIAKEKFFRPFGLTAKFGKPDWAVFKQIW---KIG 247

Query: 171 IASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVS 230
               +   LE   F  I+ L     +  +A   + I  +++G   M+   + +A +VR+ 
Sbjct: 248 APIGLSYFLEASAFSFIVFLIAPFGEDYVAAQQVGI--SLSGILYMIPQSVGSAGTVRIG 305

Query: 231 NELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASL 290
             LG      A+Y   ++      + +   + +++ +   + ++ D   +    + +   
Sbjct: 306 FSLGRREFSRARYISGVSLVSGWVLAVITVLSLVLFRSPLASMYNDDPAVLSIASTVLLF 365

Query: 291 LGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIG 350
            G+    +  Q + S    G     +  +I+   ++  GL  G+LL Y+   G+ G W  
Sbjct: 366 AGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYGFWTA 425

Query: 351 MICGTLLQTLILLYIVYK 368
           +I    +  + L++ + K
Sbjct: 426 LIASLTIAAVALVWCLEK 443


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.142    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,680,888
Number of Sequences: 62578
Number of extensions: 407317
Number of successful extensions: 1048
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 3
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)