Query 015884
Match_columns 398
No_of_seqs 233 out of 1881
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 01:47:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1E-51 2.2E-56 387.2 43.6 374 1-377 72-451 (455)
2 PRK10189 MATE family multidrug 100.0 1.5E-47 3.3E-52 362.4 44.9 371 1-373 84-466 (478)
3 PRK00187 multidrug efflux prot 100.0 2.1E-47 4.5E-52 361.4 45.0 366 2-369 66-444 (464)
4 PRK01766 multidrug efflux prot 100.0 4.5E-45 9.7E-50 346.6 45.0 369 2-372 68-445 (456)
5 PRK09575 vmrA multidrug efflux 100.0 2.8E-45 6.1E-50 346.3 43.2 363 2-368 69-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 3.4E-44 7.4E-49 336.4 45.0 362 2-373 66-434 (441)
7 TIGR01695 mviN integral membra 100.0 2.2E-34 4.8E-39 277.4 43.2 356 6-369 61-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 7.8E-33 1.7E-37 265.8 41.3 359 2-369 57-434 (488)
9 PRK15099 O-antigen translocase 100.0 5.4E-32 1.2E-36 254.1 39.1 349 2-368 59-411 (416)
10 TIGR00797 matE putative efflux 100.0 2.2E-32 4.8E-37 250.6 35.3 289 1-291 48-341 (342)
11 PF03023 MVIN: MviN-like prote 100.0 5.5E-31 1.2E-35 247.5 44.6 360 2-370 34-404 (451)
12 KOG1347 Uncharacterized membra 100.0 8.9E-32 1.9E-36 250.4 29.1 386 2-388 85-471 (473)
13 COG0728 MviN Uncharacterized m 100.0 2.7E-27 5.9E-32 218.8 42.2 363 2-370 67-438 (518)
14 PRK10459 colanic acid exporter 99.9 2.8E-23 6E-28 199.6 40.3 328 23-368 75-404 (492)
15 COG0534 NorM Na+-driven multid 99.9 2.9E-25 6.3E-30 208.6 25.9 210 159-371 12-223 (455)
16 PRK00187 multidrug efflux prot 99.9 4.6E-24 1E-28 202.3 26.9 207 159-369 5-215 (464)
17 PRK10367 DNA-damage-inducible 99.9 5.4E-24 1.2E-28 200.0 27.1 206 161-368 6-211 (441)
18 PRK10189 MATE family multidrug 99.9 1.1E-23 2.5E-28 199.7 26.6 205 161-368 26-236 (478)
19 PRK09575 vmrA multidrug efflux 99.9 3.7E-24 8E-29 202.6 21.6 207 160-369 8-215 (453)
20 PRK01766 multidrug efflux prot 99.9 1.1E-22 2.3E-27 193.4 27.5 207 160-369 8-218 (456)
21 COG2244 RfbX Membrane protein 99.9 1.9E-21 4.1E-26 186.4 36.3 278 64-351 117-394 (480)
22 TIGR00797 matE putative efflux 99.8 7.4E-19 1.6E-23 161.1 25.9 194 172-368 1-196 (342)
23 PF01554 MatE: MatE; InterPro 99.8 1.1E-20 2.4E-25 153.7 9.6 162 172-335 1-162 (162)
24 TIGR02900 spore_V_B stage V sp 99.5 1.4E-12 3.1E-17 125.5 22.2 196 167-369 2-204 (488)
25 PF01943 Polysacc_synt: Polysa 99.5 1.3E-11 2.8E-16 109.2 25.5 216 4-232 55-272 (273)
26 KOG1347 Uncharacterized membra 99.5 1.9E-12 4.1E-17 121.4 20.1 206 160-369 24-230 (473)
27 TIGR01695 mviN integral membra 99.5 9.5E-12 2.1E-16 120.2 20.9 197 166-369 2-207 (502)
28 PF13440 Polysacc_synt_3: Poly 99.4 5.2E-10 1.1E-14 97.7 25.7 210 4-232 40-251 (251)
29 PRK15099 O-antigen translocase 99.4 2.2E-11 4.8E-16 114.6 17.9 193 166-369 3-197 (416)
30 PF03023 MVIN: MviN-like prote 99.3 5.7E-10 1.2E-14 105.5 22.4 146 2-149 255-405 (451)
31 PF01554 MatE: MatE; InterPro 99.3 1.5E-12 3.3E-17 105.6 2.6 112 2-113 49-162 (162)
32 COG0728 MviN Uncharacterized m 99.3 6E-09 1.3E-13 97.6 25.5 146 2-149 289-439 (518)
33 PF04506 Rft-1: Rft protein; 99.0 2.3E-07 5.1E-12 88.7 24.9 204 163-369 252-470 (549)
34 KOG2864 Nuclear division RFT1 98.9 2.5E-06 5.4E-11 76.8 26.0 300 67-369 126-449 (530)
35 PRK10459 colanic acid exporter 98.8 3.3E-06 7.1E-11 81.5 26.7 136 5-146 268-404 (492)
36 COG2244 RfbX Membrane protein 98.6 6.5E-06 1.4E-10 79.2 20.3 126 2-132 270-396 (480)
37 PF14667 Polysacc_synt_C: Poly 98.5 2.2E-05 4.7E-10 62.2 18.4 80 67-148 2-81 (146)
38 PF01943 Polysacc_synt: Polysa 98.4 0.00012 2.5E-09 64.6 21.1 187 168-369 3-191 (273)
39 PF14667 Polysacc_synt_C: Poly 98.3 3.8E-06 8.2E-11 66.6 9.2 79 288-369 2-80 (146)
40 PF13440 Polysacc_synt_3: Poly 98.2 0.00075 1.6E-08 58.6 21.5 162 188-367 9-171 (251)
41 PF07260 ANKH: Progressive ank 98.0 0.0056 1.2E-07 53.4 22.7 213 51-264 116-343 (345)
42 PF07260 ANKH: Progressive ank 98.0 0.0042 9.1E-08 54.1 21.3 168 159-337 6-180 (345)
43 PF04506 Rft-1: Rft protein; 97.4 0.0097 2.1E-07 57.5 16.4 129 20-149 340-472 (549)
44 COG4267 Predicted membrane pro 97.2 0.16 3.5E-06 45.6 27.9 241 84-338 151-414 (467)
45 KOG2864 Nuclear division RFT1 97.0 0.084 1.8E-06 48.5 16.9 142 8-151 305-453 (530)
46 COG4267 Predicted membrane pro 91.1 12 0.00026 34.2 19.4 137 216-369 75-211 (467)
47 PF00558 Vpu: Vpu protein; In 71.6 10 0.00023 26.0 4.4 39 359-397 23-61 (81)
48 TIGR00822 EII-Sor PTS system, 70.4 74 0.0016 27.8 13.3 33 215-247 110-142 (265)
49 PF04505 Dispanin: Interferon- 67.3 39 0.00085 23.4 6.7 40 219-258 34-73 (82)
50 PF03904 DUF334: Domain of unk 65.7 31 0.00066 29.0 6.7 62 17-78 142-212 (230)
51 PF05975 EcsB: Bacterial ABC t 64.6 1.2E+02 0.0027 28.2 16.1 38 237-274 89-126 (386)
52 PF01102 Glycophorin_A: Glycop 61.9 11 0.00023 28.5 3.2 28 344-371 66-93 (122)
53 PF05313 Pox_P21: Poxvirus P21 56.7 65 0.0014 26.0 6.8 28 121-148 135-162 (189)
54 COG2211 MelB Na+/melibiose sym 51.7 2.3E+02 0.005 27.3 26.3 26 89-114 144-169 (467)
55 PF14184 YrvL: Regulatory prot 49.8 1.2E+02 0.0025 23.4 10.7 105 249-357 8-113 (132)
56 PF05684 DUF819: Protein of un 38.2 3.4E+02 0.0073 25.3 10.4 16 236-251 72-87 (378)
57 PRK10739 putative antibiotic t 36.2 2.5E+02 0.0055 23.3 8.6 57 227-287 22-78 (197)
58 PF05393 Hum_adeno_E3A: Human 35.9 30 0.00064 24.1 1.8 28 342-369 30-57 (94)
59 PF01914 MarC: MarC family int 34.4 2.7E+02 0.006 23.2 8.6 56 227-286 22-77 (203)
60 TIGR00765 yihY_not_rbn YihY fa 33.6 3.2E+02 0.0069 23.7 15.4 11 8-18 106-116 (259)
61 PF03547 Mem_trans: Membrane t 33.2 3.9E+02 0.0085 24.6 9.9 12 251-262 36-47 (385)
62 PF01102 Glycophorin_A: Glycop 32.2 64 0.0014 24.4 3.3 14 135-148 78-91 (122)
63 COG4736 CcoQ Cbb3-type cytochr 31.7 1.4E+02 0.003 19.4 4.2 10 364-373 27-36 (60)
64 PF13593 DUF4137: SBF-like CPA 27.1 4.7E+02 0.01 23.6 14.8 61 79-139 107-168 (313)
65 PF14184 YrvL: Regulatory prot 26.6 3E+02 0.0065 21.2 13.5 92 26-119 5-97 (132)
66 PRK09546 zntB zinc transporter 26.6 2E+02 0.0042 26.1 6.2 43 327-371 272-323 (324)
67 PRK01637 hypothetical protein; 26.0 4.6E+02 0.01 23.2 18.7 12 226-237 113-124 (286)
68 PTZ00370 STEVOR; Provisional 25.8 1.2E+02 0.0026 26.7 4.3 32 344-375 256-290 (296)
69 PRK11111 hypothetical protein; 25.8 4.1E+02 0.0089 22.4 8.4 57 227-287 28-84 (214)
70 TIGR00383 corA magnesium Mg(2+ 25.4 2.3E+02 0.0049 25.5 6.4 17 355-371 301-317 (318)
71 TIGR01478 STEVOR variant surfa 25.1 1.1E+02 0.0023 26.9 3.8 24 130-153 268-291 (295)
72 TIGR00427 membrane protein, Ma 25.1 4.1E+02 0.0088 22.2 8.4 57 227-287 25-81 (201)
73 PF05975 EcsB: Bacterial ABC t 23.7 6E+02 0.013 23.7 17.1 35 17-51 89-124 (386)
74 KOG2468 Dolichol kinase [Lipid 23.3 5.4E+02 0.012 24.6 8.0 75 170-253 379-453 (510)
75 PF02592 DUF165: Uncharacteriz 22.7 3.7E+02 0.0081 20.9 11.2 31 6-39 14-44 (145)
76 PRK10739 putative antibiotic t 21.4 4.8E+02 0.01 21.7 8.7 55 6-63 21-75 (197)
77 PTZ00370 STEVOR; Provisional 21.0 1.1E+02 0.0024 26.8 3.2 24 130-153 264-287 (296)
78 PRK10995 inner membrane protei 20.7 5.2E+02 0.011 21.9 8.4 55 227-285 26-80 (221)
79 KOG2532 Permease of the major 20.7 7.3E+02 0.016 23.9 9.0 84 283-367 132-217 (466)
80 PF01914 MarC: MarC family int 20.5 5.1E+02 0.011 21.6 8.7 53 7-62 22-74 (203)
81 PF10710 DUF2512: Protein of u 20.1 4.2E+02 0.0091 20.5 7.4 31 327-357 67-97 (136)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1e-51 Score=387.19 Aligned_cols=374 Identities=23% Similarity=0.370 Sum_probs=352.6
Q ss_pred CchhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHH
Q 015884 1 MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAF 79 (398)
Q Consensus 1 i~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 79 (398)
++.|.++++||++|++|+++.++..+++++++++++++..++ +.+.+|++.+++.++|..+.+..|+++..++.|+..+
T Consensus 72 l~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~ 151 (455)
T COG0534 72 LGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALL 151 (455)
T ss_pred HHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999777754 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhh-cc-cccchhhHHHHHHHHHHHHHHHHHHhhhhc---cccCC
Q 015884 80 NFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHM-LN-WGTAGAAAAYNISALGISIGQMIYVVRYCK---DGWKG 154 (398)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~---~~~~~ 154 (398)
+..+++.+|+.|++|.+++.+++++++|+++|++|+++ ++ +|+.|+++||++++.+..++..+++.|+++ ....+
T Consensus 152 ~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (455)
T COG0534 152 SFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKK 231 (455)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence 99999999999999999999999999999999999998 57 999999999999999999999999886553 22223
Q ss_pred CCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015884 155 LSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELG 234 (398)
Q Consensus 155 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g 234 (398)
..+.+++..|++++.|+|.++++..+.......+.+.+++| ++++|+|+++.++.++.+++..|++++.+|+++|++|
T Consensus 232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~G 309 (455)
T COG0534 232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLG 309 (455)
T ss_pred ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33566789999999999999999999999999999999999 8899999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcc
Q 015884 235 SSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQ 314 (398)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~ 314 (398)
+||++++++..+.++..++.++...+++++++++++.++|++|+|+.+.+..++++..+..++++.+....+.+|+.||+
T Consensus 310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~ 389 (455)
T COG0534 310 AGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDA 389 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Q 015884 315 ALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTNWNKEVEQ 377 (398)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (398)
|.++..++.+.|.+.+|+.+++.... +|..|+|++...++.+..+...+++++++|+++..+
T Consensus 390 ~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (455)
T COG0534 390 KIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVA 451 (455)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999998766 899999999999999999999999999888776544
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.5e-47 Score=362.35 Aligned_cols=371 Identities=15% Similarity=0.171 Sum_probs=339.9
Q ss_pred CchhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CCHHHHHHHHHHHHHHHhhHHHH
Q 015884 1 MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLLG--QRDDIAEFAGTFAIQVIPQMFSL 77 (398)
Q Consensus 1 i~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~y~~~~~~~~~~~ 77 (398)
+++|.+++++|++|++|+|++++..++++.++++.+++.+++ +.+.++++.+++ .|+|..+.+..|+++..++.|+.
T Consensus 84 l~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~ 163 (478)
T PRK10189 84 IDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAA 163 (478)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999988765 778889999884 69999999999999999999999
Q ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhc----ccccchhhHHHHHHHHHHHHHHHHHHhhhhc-ccc
Q 015884 78 AFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHML----NWGTAGAAAAYNISALGISIGQMIYVVRYCK-DGW 152 (398)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~ 152 (398)
.+...+.+++|+.||++.+++.+++..++|++++++++++. ++|+.|+++|+.+++.+..++..+++.++.+ ...
T Consensus 164 ~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~ 243 (478)
T PRK10189 164 AITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALR 243 (478)
T ss_pred HHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccce
Confidence 99999999999999999999999999999999999999864 7999999999999999998887666654311 111
Q ss_pred ---CC-CCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015884 153 ---KG-LSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVR 228 (398)
Q Consensus 153 ---~~-~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~ 228 (398)
++ +...+.+.+|+++|.|+|.+++.........+.+.+++.+| ++++|+|+++.++.++..++..|++++.+|.
T Consensus 244 ~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~l 321 (478)
T PRK10189 244 ISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTII 321 (478)
T ss_pred eeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11235678899999999999999998888888788888898 7899999999999999999999999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 015884 229 VSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVA 308 (398)
Q Consensus 229 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 308 (398)
++|++|+||.+++++..+.+.+.++.++...+++++++++++.++|++|+|+.+.+..++++.++..++++.+.+..+.+
T Consensus 322 vg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~l 401 (478)
T PRK10189 322 TGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGL 401 (478)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcchhhHHHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhcChHH
Q 015884 309 VGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTNWNK 373 (398)
Q Consensus 309 ~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 373 (398)
++.||++.++..++.+.|++.+|+.+++....++|..|+|++..+++.+..++..+++++.+|++
T Consensus 402 rg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 402 KGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 99999999999999999999999999998777899999999999999999999999999999987
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=2.1e-47 Score=361.38 Aligned_cols=366 Identities=20% Similarity=0.273 Sum_probs=332.3
Q ss_pred chhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHH
Q 015884 2 ASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNF 81 (398)
Q Consensus 2 ~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 81 (398)
++|.++++||++|++|+|+.++.+++++.+.++++++..++..+.+|++.+++.|+|..+.+.+|+++..++.|+..+..
T Consensus 66 ~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~ 145 (464)
T PRK00187 66 IAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFM 145 (464)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999887766557799999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhc----ccccchhhHHHHHHHHHHHHHHHHHHhhhhccc----cC
Q 015884 82 PSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHML----NWGTAGAAAAYNISALGISIGQMIYVVRYCKDG----WK 153 (398)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~----~~ 153 (398)
..++++|+.|+++.+++.++++.++|+++|++++++. ++|+.|+++|+.+++.+..+...++++++.+.. +.
T Consensus 146 ~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (464)
T PRK00187 146 ALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRK 225 (464)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhc
Confidence 9999999999999999999999999999999999763 589999999999998888777666665432111 11
Q ss_pred CCCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015884 154 GLSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNEL 233 (398)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~ 233 (398)
+..+.+.+..|+++|.++|.++++..+...+.+++.+++++| ++++|++++++++..+...+..+++++.++.++|++
T Consensus 226 ~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~ 303 (464)
T PRK00187 226 GLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHY 303 (464)
T ss_pred cccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112345577899999999999999999999999999999999 789999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCC--cH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 015884 234 GSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTD--SE---EMRKAVADLASLLGITMLLNSVQPVISGVA 308 (398)
Q Consensus 234 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 308 (398)
|+||++++++..+.++.+++.++++.+++.+.+++++.++|++ |+ |+.+.+..++++.+++.++++.+.+..+++
T Consensus 304 Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~l 383 (464)
T PRK00187 304 GAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAI 383 (464)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999964 44 788899999999999999999999999999
Q ss_pred hccCcchhhHHHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhc
Q 015884 309 VGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKT 369 (398)
Q Consensus 309 ~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 369 (398)
|+.||+|.+++.++++.|++++|+.|++...+++|+.|+|+++.+++.+..+....+++++
T Consensus 384 rg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 384 RGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988889999999999999999888776666443
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=4.5e-45 Score=346.60 Aligned_cols=369 Identities=22% Similarity=0.375 Sum_probs=337.7
Q ss_pred chhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHH
Q 015884 2 ASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFN 80 (398)
Q Consensus 2 ~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
+.|.++.+||++|++|+|+.++.++.++.+.++.+++..++ ..+.++++.+++.++|..+.+..|+++..++.|+..+.
T Consensus 68 ~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 147 (456)
T PRK01766 68 LLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLY 147 (456)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999887765 77778999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhh----cccccchhhHHHHHHHHHHHHHHHHHHhhhhcc----cc
Q 015884 81 FPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHM----LNWGTAGAAAAYNISALGISIGQMIYVVRYCKD----GW 152 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~----~~ 152 (398)
..+++++|+.|+++.+++.++++.++|++++++++++ .++|+.|+++|+.+++.+..++..++.+|+.+. .+
T Consensus 148 ~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~ 227 (456)
T PRK01766 148 QVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLF 227 (456)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhh
Confidence 9999999999999999999999999999999999864 258999999999999999999887777643321 11
Q ss_pred CCCCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015884 153 KGLSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNE 232 (398)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~ 232 (398)
.+...++.+..|++++.++|..+++..+...+.++..+++++| ++++++++++.++.++...+..|++.+.++.++|+
T Consensus 228 ~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~ 305 (456)
T PRK01766 228 KGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFE 305 (456)
T ss_pred ccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222345567899999999999999999998889999999998 78999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccC
Q 015884 233 LGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGG 312 (398)
Q Consensus 233 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g 312 (398)
+|+||++++++..+.++++++.++++.+++++.+++++.++|++|||+.+.+..++++..+..++++++....+++++.|
T Consensus 306 ~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g 385 (456)
T PRK01766 306 LGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYK 385 (456)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhcChH
Q 015884 313 WQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTNWN 372 (398)
Q Consensus 313 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 372 (398)
|++.++..++++.|++++|..+++...+++|..|+|+++.+++++..++..+++++.+|+
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (456)
T PRK01766 386 DTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQ 445 (456)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887789999999999999999999888887776544
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=2.8e-45 Score=346.34 Aligned_cols=363 Identities=17% Similarity=0.216 Sum_probs=329.6
Q ss_pred chhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHH
Q 015884 2 ASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFN 80 (398)
Q Consensus 2 ~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
+.|.+++++|++|++|+|+.++.+++++.++++.+++..++ ..+.+|++.+++.|+|..+.+..|+++..++.|+..+.
T Consensus 69 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~ 148 (453)
T PRK09575 69 GMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGA 148 (453)
T ss_pred hccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999888765 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhhhhccc-cC-CCCHH
Q 015884 81 FPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDG-WK-GLSWL 158 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~-~~-~~~~~ 158 (398)
....+++|+.|+++.+++.++.+.++|+++++++++.+++|+.|+++|+.+++.+..++..++++++++.. +. +..+.
T Consensus 149 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (453)
T PRK09575 149 IALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRF 228 (453)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCc
Confidence 99999999999999999999999999999999999888999999999999999999998777766432221 11 11123
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 015884 159 AFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHP 238 (398)
Q Consensus 159 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g~~~~ 238 (398)
+++..|++++.|+|..++.........+...+.+++|+ ++++|+++++.++..+...+..|++++.+|.++|++|+||+
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~ 307 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQY 307 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCh
Confidence 55678999999999999999988888888888888884 46899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCC-cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhh
Q 015884 239 RAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTD-SEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALV 317 (398)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 317 (398)
|++++..+.++++++..+++.+++++.+++++.++|++ |||+.+.+.+++++..++.++++.+....+.+|+.||++.+
T Consensus 308 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~ 387 (453)
T PRK09575 308 DNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKA 387 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999999999999999999999995 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhh
Q 015884 318 AYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYK 368 (398)
Q Consensus 318 ~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 368 (398)
+..++... ++++|..+++... +|+.|+|+++.+++.+..+...+++++
T Consensus 388 ~~~~~~~~-~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 388 LFISIGNM-LIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHhH-HHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 99998765 7899999999765 799999999999999988877766654
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=3.4e-44 Score=336.42 Aligned_cols=362 Identities=15% Similarity=0.131 Sum_probs=314.5
Q ss_pred chhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHH
Q 015884 2 ASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFN 80 (398)
Q Consensus 2 ~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
+.|.++++||++|++|+|++++..++++.++++.+++..++ ..+.++++.+++.|+|..+.+..|+++..++.|+..+.
T Consensus 66 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~ 145 (441)
T PRK10367 66 RMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLAN 145 (441)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999888755 77888999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhhhhccccCCCC--HH
Q 015884 81 FPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLS--WL 158 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 158 (398)
..+.+++|+.||++.+++..++++++|+++|+++++++++|+.|+++||.+++.+..+...++++|+.+.+..+.+ ++
T Consensus 146 ~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 225 (441)
T PRK10367 146 LVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKT 225 (441)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhh
Confidence 9999999999999999999999999999999999998899999999999999999988877777653221111111 11
Q ss_pred h-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015884 159 A-FKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSH 237 (398)
Q Consensus 159 ~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g~~~ 237 (398)
+ .+..|+++|.+.|..+++..+...+.+.+.+++++| ++++|+|+++.++.++..++..|++++.+|.++|++|+||
T Consensus 226 ~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~ 303 (441)
T PRK10367 226 AWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARD 303 (441)
T ss_pred hhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 2 246789999999999999999999999999999999 7799999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccC---cc
Q 015884 238 PRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGG---WQ 314 (398)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g---~~ 314 (398)
++++++..+++.+++...+.+.+++++.+++++.++|++|+|+.+.+..++++.++..+.........+++++.+ |+
T Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt 383 (441)
T PRK10367 304 GSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEM 383 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHH
Confidence 999999999999999999999999999999999999999999999999999998876443334444444555555 59
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhcChHH
Q 015884 315 ALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTNWNK 373 (398)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 373 (398)
|.++..++++.|+..+ .. +++|..|+|++..+++.+..++...++++. |++
T Consensus 384 ~~~~~~~~~~~~~~~~-----~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 384 RNSMAVAAAGFALTLL-----TL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred HHHHHHHHHHHHHHHH-----HH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 9999999988764222 22 237999999999999999998888766655 744
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=2.2e-34 Score=277.38 Aligned_cols=356 Identities=14% Similarity=0.147 Sum_probs=299.7
Q ss_pred hHHHHhhhCCCCc-chHHHHHHHHHHHHHHHHH-HHHH-HHHhHHHHHHHc--CCCHHHHHHHHHHHHHHHhhHHHHHHH
Q 015884 6 ETLCGQAFGAGQV-ELLGVYMQRSILILFVTCI-FLLP-LYIFATPILKLL--GQRDDIAEFAGTFAIQVIPQMFSLAFN 80 (398)
Q Consensus 6 ~~~~s~~~g~~~~-~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~~~~--~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
+..+++..+++|+ |+.++.+.+++....+.+. +..+ .+.+.+++..++ +.++|..+.+..|+++..++.|+..+.
T Consensus 61 ~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~ 140 (502)
T TIGR01695 61 SAFVPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLA 140 (502)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555544 5777777777665554444 3344 477778888877 557777889999999999999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhh--HHHHHHHHHHHHHHHHHHhhhhccccCCCCHH
Q 015884 81 FPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAA--AAYNISALGISIGQMIYVVRYCKDGWKGLSWL 158 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (398)
...++++|+++|++.+++.+++.++++++..+++ ..++|..|++ +++++++.+..++.+++.+|+..+.+++++ .
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~ 217 (502)
T TIGR01695 141 AVFGGILNARKRFFIPSFSPILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFN-F 217 (502)
T ss_pred HHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCC-C
Confidence 9999999999999999999999998887754333 3568999988 999999999988877766543322222221 2
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCC
Q 015884 159 AFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGM-LFLGINAAISVRVSNELGSSH 237 (398)
Q Consensus 159 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~-~~~~i~~~~~p~~s~~~g~~~ 237 (398)
+.+..|++++++.|..+++...++...+|..+.+.++ ++++++|+.++++..++.. +..+++++..|.+++++|+||
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~ 295 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGN 295 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4467899999999999999999999999998877777 6689999999999988765 588999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCc
Q 015884 238 PRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTD----SEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGW 313 (398)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 313 (398)
++++++..+++.+....+++|.+++++.+++++.+++.+ |+|..+.+..++++++++.++.+++......+++.||
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~ 375 (502)
T TIGR01695 296 WNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKD 375 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccC
Confidence 999999999999999999999999999999999999976 5677888999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhc
Q 015884 314 QALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKT 369 (398)
Q Consensus 314 ~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 369 (398)
+|.+++.++.+. ++++++++++.+. +|..|+|+++.+++.+..+...++++|+
T Consensus 376 ~~~~~~~~~~~~-~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 376 TRTPFINSVISV-VLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred CccCHHHHHHHH-HHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987 8899999998765 8999999999999999988887777765
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=7.8e-33 Score=265.77 Aligned_cols=359 Identities=14% Similarity=0.195 Sum_probs=297.6
Q ss_pred chhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHH
Q 015884 2 ASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFN 80 (398)
Q Consensus 2 ~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
+++..+.+||+.|++|+++.++.+++++.+.++.+++..++ ..+.+++...++.+++. ..++++..+..++..+.
T Consensus 57 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~ 132 (488)
T TIGR02900 57 PVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALS 132 (488)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999888765 66677776666655543 34678888999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhh-----cccccchhhHHHHHHHHHHHHHHHHHHhhhhcc--cc-
Q 015884 81 FPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHM-----LNWGTAGAAAAYNISALGISIGQMIYVVRYCKD--GW- 152 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~-----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~--~~- 152 (398)
...++++|+++|++..+..+++++++|+.++..++.. .+.++.|+++++.+++.+..++..++++|+.+. +.
T Consensus 133 ~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T TIGR02900 133 SVLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFP 212 (488)
T ss_pred HHHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999998887665542 246788899999999999988876665543221 11
Q ss_pred -CCCCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----Cc-hH---Hhhhhh-HHHHHHHHHHHHHHHHHH
Q 015884 153 -KGLSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHL----ED-PV---IAVGSL-SICMNINGWEGMLFLGIN 222 (398)
Q Consensus 153 -~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~-g~---~~~a~~-~i~~~i~~~~~~~~~~i~ 222 (398)
.+....+++..|+++++++|..++++...+....|..++++. |. .. +.++.| +++.++..++..+..+++
T Consensus 213 ~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~ 292 (488)
T TIGR02900 213 FFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLS 292 (488)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHH
Confidence 111223456889999999999999999999999998888653 11 01 223333 456677788888899999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHH
Q 015884 223 AAISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQP 302 (398)
Q Consensus 223 ~~~~p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 302 (398)
++..|.++++.|+||+++.++..++..+....++.|.++.+..+++++.+++.++++ +.++++++++..++...+.
T Consensus 293 ~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~ 368 (488)
T TIGR02900 293 TALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSA 368 (488)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876544 5677999999999999999
Q ss_pred HHHHHHhccCcchhhHHHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhc
Q 015884 303 VISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKT 369 (398)
Q Consensus 303 ~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 369 (398)
...+.+++.||+|.+++.++.+. ++++++++++...+.+|..|+|+++.+++++..+...+..+|.
T Consensus 369 ~~~~~l~~~g~~~~~~~~~~~~~-i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 369 PLQSILQGLGKQKVALRNSLIGA-IVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHhcCcchHHHHHHHHHH-HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 8999999988733458999999999999999998888877764
No 9
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=5.4e-32 Score=254.06 Aligned_cols=349 Identities=11% Similarity=0.030 Sum_probs=287.8
Q ss_pred chhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHH
Q 015884 2 ASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFN 80 (398)
Q Consensus 2 ~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
++|.++.++|+ ++|+|+.++++++++.+.+..+++.+++ +.+.+|+...++.+++. ..+..+..+..+...+.
T Consensus 59 ~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 132 (416)
T PRK15099 59 FNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWA 132 (416)
T ss_pred cceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHH
Confidence 34557788887 6788899999999999999999988765 78888998878766653 24456666666677888
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhhhhccccCC-CCHHh
Q 015884 81 FPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGWKG-LSWLA 159 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 159 (398)
....+.+|+.++++.++...+++.++|+.+ +++.+.. .|+.|+++|+.+++.+..+...++++|+.+.+..+ ....+
T Consensus 133 ~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (416)
T PRK15099 133 NLLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWD 210 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCC
Confidence 899999999999999999999999999887 4444332 49999999999999998887766666433211111 11234
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCC
Q 015884 160 FKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTG-HLEDPVIAVGSLSICMNING-WEGMLFLGINAAISVRVSNELGSSH 237 (398)
Q Consensus 160 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~a~~~i~~~i~~-~~~~~~~~i~~~~~p~~s~~~g~~~ 237 (398)
.+..|+++++|.|..+++....+....+..+++ .+| ++++|.|+++.++.+ +...+..+++++.+|.++++ +|
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~ 285 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TE 285 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC
Confidence 567899999999999999999999999888885 777 789999999999987 45889999999999999995 67
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhh
Q 015884 238 PRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALV 317 (398)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 317 (398)
+++.++..++..+....++.+.++.++++++++.+++.+|+ ++.+.+++++++++.++...+......+.+.++++..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~ 363 (416)
T PRK15099 286 KRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFY 363 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999865 4557788999999999888888777777788888877
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhh
Q 015884 318 AYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYK 368 (398)
Q Consensus 318 ~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 368 (398)
...++... ++++++++++.+. +|..|+++++.+++++......+...+
T Consensus 364 ~~~~~~~~-~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 364 ILAEVSQF-TLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHH-HHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776665 8999999999877 899999999999999988877766553
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=2.2e-32 Score=250.60 Aligned_cols=289 Identities=26% Similarity=0.393 Sum_probs=260.6
Q ss_pred CchhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHH
Q 015884 1 MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAF 79 (398)
Q Consensus 1 i~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 79 (398)
+++|..+.++|+.|++|+|+.++.+++++.+..+.+++..++ ..+.+++..+++.+++..+.+..|++++.++.++..+
T Consensus 48 i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~ 127 (342)
T TIGR00797 48 LGTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLL 127 (342)
T ss_pred HHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999988865 7888899998888888889999999999999999999
Q ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHh-hcc-cccchhhHHHHHHHHHHHHHHHHHHhhhhcccc--CCC
Q 015884 80 NFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIH-MLN-WGTAGAAAAYNISALGISIGQMIYVVRYCKDGW--KGL 155 (398)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~-~~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~--~~~ 155 (398)
.....+++|+.||++.+.+.++++.++++.++++++. .++ +|+.|+++++.+++.+..++..++.+|+.+.+. ++.
T Consensus 128 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (342)
T TIGR00797 128 NFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGL 207 (342)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence 9999999999999999999999999999999999887 567 889999999999999999988777665222111 112
Q ss_pred CHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015884 156 SWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGS 235 (398)
Q Consensus 156 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g~ 235 (398)
.+.+.+..|+++++++|..+.++...+...++..+.+.+| ++++++|+++.++.++...+..+++++..|.+++++|+
T Consensus 208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 285 (342)
T TIGR00797 208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGA 285 (342)
T ss_pred cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2334578899999999999999999999999999999888 77999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHH
Q 015884 236 SHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLL 291 (398)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~ 291 (398)
||.++.++..+++++..+.++++.+++++++++++.++|++|||+.+.+..++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 286 GDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998888764
No 11
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=5.5e-31 Score=247.48 Aligned_cols=360 Identities=17% Similarity=0.208 Sum_probs=315.1
Q ss_pred chhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc--CCCHHHHHHHHHHHHHHHhhHHHHH
Q 015884 2 ASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLL--GQRDDIAEFAGTFAIQVIPQMFSLA 78 (398)
Q Consensus 2 ~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~y~~~~~~~~~~~~ 78 (398)
+++..|..++.. ++|+|+.++..++.+.+..+.++.++++ .++++++.+.+ |.++|..+.+..++++..+..++..
T Consensus 34 ~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~ 112 (451)
T PF03023_consen 34 SAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIG 112 (451)
T ss_pred HHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 345668888888 7889999999999988888888877765 88889998887 5678889999999999999999999
Q ss_pred HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccc---cchhhHHHHHHHHHHHHHHHHHHhhhhccccCCC
Q 015884 79 FNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWG---TAGAAAAYNISALGISIGQMIYVVRYCKDGWKGL 155 (398)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g---~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~ 155 (398)
+..++.+++|+++|+..+...+++.++..++...++.. ..| +.+.++|.+++..++.++.+...+|...+.+.++
T Consensus 113 l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~ 190 (451)
T PF03023_consen 113 LSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKF 190 (451)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccC
Confidence 99999999999999999999999888877665443332 355 8889999999999999988887775443333333
Q ss_pred CHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Q 015884 156 SWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGM-LFLGINAAISVRVSNELG 234 (398)
Q Consensus 156 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~-~~~~i~~~~~p~~s~~~g 234 (398)
+.++ ++.|++++...|..+.....++...++..+.+.+++ .++++++.++++.+++.. +..+++++..|.+++...
T Consensus 191 ~~~~-~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~--G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~ 267 (451)
T PF03023_consen 191 DWRD-PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGE--GSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAA 267 (451)
T ss_pred CCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3332 568899999999999999999999999999999984 489999999999998874 588999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Q 015884 235 SSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTD----SEEMRKAVADLASLLGITMLLNSVQPVISGVAVG 310 (398)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 310 (398)
+||.++.++..++.++....+.+|.++.+..+++++.+++.. |+|..+....++++++++.++.+++..+...+++
T Consensus 268 ~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya 347 (451)
T PF03023_consen 268 EGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYA 347 (451)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988852 5666888999999999999999999999999999
Q ss_pred cCcchhhHHHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhcC
Q 015884 311 GGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTN 370 (398)
Q Consensus 311 ~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 370 (398)
.||+|.++..++++. ++++.+++++.+. +|..|+++++.++..+..+.....++|+.
T Consensus 348 ~~~~~~~~~~~~~~~-~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 348 LGDTKTPVRISVISV-VLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred ccCcHhHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999998 8999999888876 99999999999999999998888887763
No 12
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=8.9e-32 Score=250.45 Aligned_cols=386 Identities=41% Similarity=0.666 Sum_probs=361.8
Q ss_pred chhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHH
Q 015884 2 ASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNF 81 (398)
Q Consensus 2 ~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 81 (398)
+.+..++++|++|.++++....+.+++.......+++..+++.+.+|++..+++|++....+..|.++.++..+......
T Consensus 85 ~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~ 164 (473)
T KOG1347|consen 85 QLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSF 164 (473)
T ss_pred chhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhhhh-ccccCCCCHHhH
Q 015884 82 PSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYC-KDGWKGLSWLAF 160 (398)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 160 (398)
..+.++|++++..+..+......++|+.+++++++..++|..|++++..+++.+.......|..... ...|..++.+ +
T Consensus 165 ~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~ 243 (473)
T KOG1347|consen 165 PLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-F 243 (473)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-h
Confidence 9999999999999999999999999999999999999999999999999999999999888777432 4455555555 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhH
Q 015884 161 KDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRA 240 (398)
Q Consensus 161 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g~~~~~~ 240 (398)
+.++++++.++|..++..++...+.+..+..|.+++...++++.+++.++.....++..+++.+.+.++++.+|+||.++
T Consensus 244 ~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ 323 (473)
T KOG1347|consen 244 DSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKR 323 (473)
T ss_pred hhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhh
Confidence 89999999999999999999999999999999998767899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHH
Q 015884 241 AKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYI 320 (398)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 320 (398)
+|...+.....++..+...+..++.+++.+..+|++|+|+.+...+..++++...++++.+.+..+..++.|+++...++
T Consensus 324 ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~v 403 (473)
T KOG1347|consen 324 ARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVI 403 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhcCC
Q 015884 321 NLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTNWNKEVEQASERMRKWGAG 388 (398)
Q Consensus 321 ~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (398)
++...+++++|....+.+..++|..|.|.+...+..+..........+.+|+++..+.+++...++.+
T Consensus 404 nl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~ 471 (473)
T KOG1347|consen 404 NLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVL 471 (473)
T ss_pred eeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccC
Confidence 99999999999999999878899999999999998888888888888899999999988887665543
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=2.7e-27 Score=218.77 Aligned_cols=363 Identities=13% Similarity=0.102 Sum_probs=307.1
Q ss_pred chhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc-CC--CHHHHHHHHHHHHHHHhhHHHH
Q 015884 2 ASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLL-GQ--RDDIAEFAGTFAIQVIPQMFSL 77 (398)
Q Consensus 2 ~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~y~~~~~~~~~~~ 77 (398)
+++..|...++..++++|+.++..+........+.+.++++ .++.+.+...+ +. +++....+....++..+..++.
T Consensus 67 s~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~i 146 (518)
T COG0728 67 SSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFI 146 (518)
T ss_pred hhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 56788888888887777777776666665666666666665 66666666444 32 2333336888889999999999
Q ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhhhhccccCCCCH
Q 015884 78 AFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLSW 157 (398)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (398)
.+.....+.++..+|+..+.+.++..|+.-+.....+....+....+.++|++++.+.+.++.+..++|......+++..
T Consensus 147 sL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~ 226 (518)
T COG0728 147 SLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGF 226 (518)
T ss_pred HHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC
Confidence 99999999999999999999999988888885555555443335778999999999999999999988754333334433
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCC
Q 015884 158 LAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEG-MLFLGINAAISVRVSNELGSS 236 (398)
Q Consensus 158 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~-~~~~~i~~~~~p~~s~~~g~~ 236 (398)
+| ++.|++.+...|..+.....++...+|+.+.+.+.+ .+++.++.+.++.+++. .+..++++...|.+|++..++
T Consensus 227 ~~-~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~--Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~ 303 (518)
T COG0728 227 KD-PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAE--GSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANG 303 (518)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33 788999999999999999999999999999999984 48889999999999888 669999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccC
Q 015884 237 HPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTD----SEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGG 312 (398)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g 312 (398)
|.++.++..+.+++.+.++++|.++.+..+++|+.+++.. +++......+.+..++++.++.....++...+++.+
T Consensus 304 ~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~ 383 (518)
T COG0728 304 DWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYARE 383 (518)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999988842 455577888999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhcC
Q 015884 313 WQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTN 370 (398)
Q Consensus 313 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 370 (398)
|+|.|+++++++. ++|+.+++.+... +|..|++.++.++.++++.+.++..+|+.
T Consensus 384 d~ktP~~i~ii~~-~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 384 DTKTPMKIAIISL-VVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred CCCcChHHHHHHH-HHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999 9999999777665 88999999999999998888888777763
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.94 E-value=2.8e-23 Score=199.56 Aligned_cols=328 Identities=13% Similarity=0.138 Sum_probs=263.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHHH
Q 015884 23 VYMQRSILILFVTCIFLLPL-YIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGL 101 (398)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 101 (398)
+..++.+++.++.+++..++ +.+.+++...++ +++. ...+.+..+..++..+.....+.++++++++.....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 45566677777777776655 445555554444 3332 34567777888888888889999999999999999989
Q ss_pred HHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhhhhccccCCCCHHhHhhHHHHHHHHHHHHHHHHHHH
Q 015884 102 AAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLCLEI 181 (398)
Q Consensus 102 ~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~ 181 (398)
..++...++...+.. .+.|..+.++++.+++.+..+...+...++.+ ++++ .+.+..|++++++.|...+++...
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~---~~~~-~~~~~~k~ll~~~~~~~~~~~~~~ 224 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKIYR---PALH-FSLASVKPNLSFGAWQTAERIINY 224 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcccCC---ccce-ecHHHHHHHHhhhHHHHHHHHHHH
Confidence 888888777665553 47899999999999988877654433333221 1111 234667899999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 015884 182 WYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGM-LFLGINAAISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCA 260 (398)
Q Consensus 182 ~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~-~~~~i~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (398)
+...+|.++++.+.+ ++++|.|+.+.++.+.+.. +...+++...|..++. ++|.++.++.+++..+....+++|..
T Consensus 225 ~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~ 301 (492)
T PRK10459 225 LNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLL 301 (492)
T ss_pred HHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887642 7899999999999887654 4556788999999885 67889999999999999999999999
Q ss_pred HHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhhhHHHHHHHhh
Q 015884 261 IVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKL 340 (398)
Q Consensus 261 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 340 (398)
+++.++++++..++.+++ ++.+...++++++...+..........+++.||+|..+..++... ++.+|..+.+...
T Consensus 302 ~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~~~- 377 (492)
T PRK10459 302 LGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGGQL- 377 (492)
T ss_pred HHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHHhh-
Confidence 999999999999888754 667889999999999999999999999999999999999998887 7888888777655
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHhh
Q 015884 341 KFGVQGIWIGMICGTLLQTLILLYIVYK 368 (398)
Q Consensus 341 ~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 368 (398)
+|..|+++++.+++.+..+...+...|
T Consensus 378 -~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 378 -AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988888776744
No 15
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.94 E-value=2.9e-25 Score=208.65 Aligned_cols=210 Identities=19% Similarity=0.279 Sum_probs=201.2
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 015884 159 AFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHP 238 (398)
Q Consensus 159 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g~~~~ 238 (398)
..++.|+++++++|..++++.+.+.+.+|+.++|+++ ++++|+.++++++..+...+..+++.+..+.++|++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 3467888999999999999999999999999999999 88999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhH
Q 015884 239 RAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVA 318 (398)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 318 (398)
+++++..++++..+++++++..++.+.+++++.+++.+++|+.+.+.+|+++..++.++..++....+++|+.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHh-hC-CCcchhhHHHHHHHHHHHHHHHHHHhhcCh
Q 015884 319 YINLFCYYVVGLPFGFLLGYK-LK-FGVQGIWIGMICGTLLQTLILLYIVYKTNW 371 (398)
Q Consensus 319 ~~~~~~~~~~~i~~~~~l~~~-~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (398)
+.++++. +.|+++++++++. .+ +|+.|+++|+.+++.+..+...++++|++.
T Consensus 170 ~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999999 9999999999987 46 999999999999999999999888887753
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.93 E-value=4.6e-24 Score=202.25 Aligned_cols=207 Identities=15% Similarity=0.136 Sum_probs=190.1
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 015884 159 AFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHP 238 (398)
Q Consensus 159 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g~~~~ 238 (398)
+.++.|++++.++|.+++++.+.+...+|+.+++++| ++++|+++++.++..+...+..+++++..|.++|++|+||+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 4467899999999999999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhH
Q 015884 239 RAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVA 318 (398)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 318 (398)
+++++..+.++.+.+.++++..++.+ +.+++.++++.|||+.+.+.+|+++..++.++..+.....+++++.||++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877765 67999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHh----hCCCcchhhHHHHHHHHHHHHHHHHHHhhc
Q 015884 319 YINLFCYYVVGLPFGFLLGYK----LKFGVQGIWIGMICGTLLQTLILLYIVYKT 369 (398)
Q Consensus 319 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 369 (398)
+.++++. ++|++++|++++. +++|+.|+++|+.+++.+..+...++++++
T Consensus 162 ~~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 162 VISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998 8899999988753 358999999999999888776665555543
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.93 E-value=5.4e-24 Score=200.00 Aligned_cols=206 Identities=16% Similarity=0.157 Sum_probs=193.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhH
Q 015884 161 KDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRA 240 (398)
Q Consensus 161 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g~~~~~~ 240 (398)
++.|+++++++|..++++...+...+|+.+++++++ ++++|+.+++.++..+...+..+++.+..+.++|++|+||+++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 567889999999999999999999999999999853 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHH
Q 015884 241 AKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYI 320 (398)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 320 (398)
+++..++++..+.+++++..+....+.+++.++++.|||+.+.+.+|+++..++.++........+.+|+.||+|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999998888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhh
Q 015884 321 NLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYK 368 (398)
Q Consensus 321 ~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 368 (398)
++++. ++|+++++++.+.+++|+.|+++|+.+++.+..+...++++|
T Consensus 165 ~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 899999999988778999999999999999988777666654
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.93 E-value=1.1e-23 Score=199.70 Aligned_cols=205 Identities=14% Similarity=0.141 Sum_probs=191.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhH
Q 015884 161 KDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRA 240 (398)
Q Consensus 161 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g~~~~~~ 240 (398)
+..|+++++++|..++++...+...+|+.+++++| ++++|+++++.++..+...+..+++++.++.++|++|+||+++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 35788999999999999999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccC--CcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhH
Q 015884 241 AKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFT--DSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVA 318 (398)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 318 (398)
+++..+.++.+++.++++.+++.+.+++++.+++. .|+|+.+.+.+|+++..++.++..+.....+++|+.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHh----hCCCcchhhHHHHHHHHHHHHHHHHHHhh
Q 015884 319 YINLFCYYVVGLPFGFLLGYK----LKFGVQGIWIGMICGTLLQTLILLYIVYK 368 (398)
Q Consensus 319 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 368 (398)
..++.+. ++|+++++++... +++|+.|+|+|+.+++.+..+...+++.+
T Consensus 184 ~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 184 LINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred HHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999876 8999999988763 47899999999999999988776655543
No 19
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.93 E-value=3.7e-24 Score=202.61 Aligned_cols=207 Identities=14% Similarity=0.125 Sum_probs=194.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 015884 160 FKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHL-EDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHP 238 (398)
Q Consensus 160 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g~~~~ 238 (398)
.+..|+++++++|..++++.+.+...+|+.+++++ | +++++++++++++..+...+..+++.+..+.++|++|+||+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 35678899999999999999999999999999996 7 78999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhH
Q 015884 239 RAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVA 318 (398)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 318 (398)
|++++..+++++.+.+++++.+++.+.+++++.++++.|+|+.+.+.+|+++..++.++..+......++|+.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhc
Q 015884 319 YINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKT 369 (398)
Q Consensus 319 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 369 (398)
..++.+. ++++++++++.+.+++|+.|+++|+.+++.+..++..++++++
T Consensus 166 ~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 166 GLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999987 8999999999987789999999999999999988877666544
No 20
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.92 E-value=1.1e-22 Score=193.45 Aligned_cols=207 Identities=12% Similarity=0.107 Sum_probs=193.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 015884 160 FKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPR 239 (398)
Q Consensus 160 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g~~~~~ 239 (398)
.+.+|+++++++|..++++..++...+|..+++++| ++++++++++.++..+...+..+++.+..|.+++++|+||++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 467889999999999999999999999999999998 778999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHH
Q 015884 240 AAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAY 319 (398)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 319 (398)
+.++..+.++.+++.++++.+++++.+++++.++++.|+|+.+.+.+++++.+++.++..+.....+++++.||++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHh----hCCCcchhhHHHHHHHHHHHHHHHHHHhhc
Q 015884 320 INLFCYYVVGLPFGFLLGYK----LKFGVQGIWIGMICGTLLQTLILLYIVYKT 369 (398)
Q Consensus 320 ~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 369 (398)
.++++. ++++++++++... +++|+.|+++++.+++.+..++..++.+|+
T Consensus 166 ~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 166 IGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999998 8899999988742 458999999999999999888887776654
No 21
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.92 E-value=1.9e-21 Score=186.39 Aligned_cols=278 Identities=15% Similarity=0.139 Sum_probs=225.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Q 015884 64 GTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIY 143 (398)
Q Consensus 64 ~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~ 143 (398)
...+....+..+........++++|+.++++......+ ....-....+.+.. .......++..++..........+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 192 (480)
T COG2244 117 ALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIV-SSIFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLIL 192 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH-HHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34467788999999999999999999999999988844 43111111112221 234445566666655555554444
Q ss_pred HhhhhccccCCCCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 015884 144 VVRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINA 223 (398)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~ 223 (398)
..++.+...++...+..+..|++++.++|....+....+....|.+++++.-+ ++++|.|+.++++......+..++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~ 271 (480)
T COG2244 193 LGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNR 271 (480)
T ss_pred HHHhhhhccccccCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHH
Confidence 43222212212112235788899999999999999999999999999998643 88999999999999999999999999
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 015884 224 AISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPV 303 (398)
Q Consensus 224 ~~~p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 303 (398)
+..|.+++...++|.++.++..++..++...++.|..+++..+++++..++.+++. ..+...++++++..++......
T Consensus 272 ~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~ 349 (480)
T COG2244 272 VLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSL 349 (480)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887653 3377789999999999999999
Q ss_pred HHHHHhccCcchhhHHHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHH
Q 015884 304 ISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGM 351 (398)
Q Consensus 304 ~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~ 351 (398)
....+++.|+++..++.+.++. +.++.+++++.+. +|..|++.++
T Consensus 350 ~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li~~--~g~~g~~~a~ 394 (480)
T COG2244 350 TSSLLQALGKQRLLLLISLISA-LLNLILNLLLIPR--FGLIGAAIAT 394 (480)
T ss_pred HHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHHHh--hhhhhHHHHH
Confidence 9999999999999999999998 8999999999876 8899999988
No 22
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.85 E-value=7.4e-19 Score=161.06 Aligned_cols=194 Identities=18% Similarity=0.261 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 015884 172 ASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRAAKYSVIITTTQ 251 (398)
Q Consensus 172 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~ 251 (398)
|.+++++...+...+++.+.+++| ++++++++++.++..+...+..+++++..|.+++++|++|+++.++..++....
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678889999999999999999998 778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhhh
Q 015884 252 SLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLP 331 (398)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 331 (398)
...++++.+++.+++++++.++++.|++..+.+.++++++.++.++...+....+.+++.||++.++..++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999988 88999
Q ss_pred HHHHHHH-hhC-CCcchhhHHHHHHHHHHHHHHHHHHhh
Q 015884 332 FGFLLGY-KLK-FGVQGIWIGMICGTLLQTLILLYIVYK 368 (398)
Q Consensus 332 ~~~~l~~-~~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~ 368 (398)
.++++.. ..+ +|..|+++++.+++++..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888876 555 779999999999999988877766665
No 23
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.84 E-value=1.1e-20 Score=153.66 Aligned_cols=162 Identities=22% Similarity=0.395 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 015884 172 ASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRAAKYSVIITTTQ 251 (398)
Q Consensus 172 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~ 251 (398)
|..++++.+.+...+++.+++++| ++++++++++.++..+...+..+++++..+.++|++|++|++++++..++++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 889999999999999999999997 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhhh
Q 015884 252 SLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLP 331 (398)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 331 (398)
...++++.+++.+.+++++.++|++|+|+.+.+.+++++..++.++........+++++.||++.+++.++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 015884 332 FGFL 335 (398)
Q Consensus 332 ~~~~ 335 (398)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9885
No 24
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.53 E-value=1.4e-12 Score=125.46 Aligned_cols=196 Identities=16% Similarity=0.174 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChhHHHHH
Q 015884 167 VRLSIASAIMLCLEIWYFMTIIVLTGH-LEDPVIAVGSLSICMNINGWEGMLF-LGINAAISVRVSNELGSSHPRAAKYS 244 (398)
Q Consensus 167 l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~a~~~i~~~i~~~~~~~~-~~i~~~~~p~~s~~~g~~~~~~~~~~ 244 (398)
.|-+.|..++++.......++..++++ +| +++.|+++.+.++..+...+. .|++++..+.+++..|++|+++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg--~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~ 79 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILG--AEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKI 79 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHH
Confidence 466789999999999999999988887 57 889999999999988877765 48999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHH
Q 015884 245 VIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFC 324 (398)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 324 (398)
.+.+....+..+++.+++++.+++++.+.+.+|++.. .+++++.+..++..+.......+|+.+|.|..+..++.+
T Consensus 80 ~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 80 LKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSL----YSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 9999999999999999999999999988777766532 457888889999999999999999999999999999988
Q ss_pred HHhhhhhHHHHHHH-----hhCCCcchhhHHHHHHHHHHHHHHHHHHhhc
Q 015884 325 YYVVGLPFGFLLGY-----KLKFGVQGIWIGMICGTLLQTLILLYIVYKT 369 (398)
Q Consensus 325 ~~~~~i~~~~~l~~-----~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 369 (398)
. ++++.....+.. ..++|+.|+.+++.++..+..+....+++|+
T Consensus 156 ~-i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~ 204 (488)
T TIGR02900 156 Q-IVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRK 204 (488)
T ss_pred H-HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 666655443322 1235677888888888888877766555443
No 25
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.52 E-value=1.3e-11 Score=109.17 Aligned_cols=216 Identities=15% Similarity=0.183 Sum_probs=155.6
Q ss_pred hhhHHHHhhhCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHH
Q 015884 4 ALETLCGQAFGAGQV--ELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNF 81 (398)
Q Consensus 4 g~~~~~s~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 81 (398)
|....+.|+..+.+. ++.+++..+......+.+++...... +....+.++.. . .+........++.....
T Consensus 55 G~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~ 126 (273)
T PF01943_consen 55 GLSQAIVRFIAEYKDKKELRSAYFSSVLFLLLIFSLIFLLILL----IASFFGNPSLS-L---ILIILALLILILSSLSS 126 (273)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCchHH-H---HHHHHHHHHHHHHHHHH
Confidence 445555555554444 44555555555544444444433322 22233333321 1 12222222225778888
Q ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhhhhccccCCCCHHhHh
Q 015884 82 PSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLSWLAFK 161 (398)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (398)
...+++++.++.+.....++...++..++..+++.. +.+..+...+..++..+..++..++.+|+.+ .+....+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 202 (273)
T PF01943_consen 127 VFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR---PRFSFFSKK 202 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccccccchH
Confidence 899999999999999999999999988776666644 3458899999999999988888877776543 222333357
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015884 162 DIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNE 232 (398)
Q Consensus 162 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~ 232 (398)
..|++++.+.|..++.+...+....|.++++.+.+ ++++|.|+++.++......+..++.++..|.+++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 203 FFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999999998753 88999999999999999999999999999999975
No 26
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.51 E-value=1.9e-12 Score=121.42 Aligned_cols=206 Identities=16% Similarity=0.236 Sum_probs=189.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 015884 160 FKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGW-EGMLFLGINAAISVRVSNELGSSHP 238 (398)
Q Consensus 160 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~-~~~~~~~i~~~~~p~~s~~~g~~~~ 238 (398)
..+.|++.+++.|..+....+.....++..+.|++| +.++++.++++...+. .+.+..++..+..+..+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 578899999999999999999999999999999999 6699999999888775 5678999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhH
Q 015884 239 RAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVA 318 (398)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 318 (398)
+.......++.......+.+.+.... +.+++...+.+||++...+..|.++..+..+.+.........+|+.++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~~-~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLIL-NSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999998888898875555 77999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhc
Q 015884 319 YINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKT 369 (398)
Q Consensus 319 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 369 (398)
+...... ++++++++++....++|..|++.+..+++.+.......+....
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 9999998 9999999999999999999999999999999888777766554
No 27
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.45 E-value=9.5e-12 Score=120.21 Aligned_cols=197 Identities=13% Similarity=0.159 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHhh-hhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcCCChhHH
Q 015884 166 FVRLSIASAIMLCLEIWYFMTIIVLTGH-LEDPVIAV-GSLSICMNINGWEGMLF--LGINAAISVRVSNELGSSHPRAA 241 (398)
Q Consensus 166 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~-a~~~i~~~i~~~~~~~~--~~i~~~~~p~~s~~~g~~~~~~~ 241 (398)
+.|-+.-..+.++...+...++..++++ +| +++. ++++.+.++......+. .+++++..|...+..+++ ++.
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG--~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~ 77 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFG--AGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEA 77 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHH
Confidence 3556666777888888888899988888 78 6677 79999999987666553 468889888887664433 677
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHchhhhhhccC--CcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhH
Q 015884 242 KYSVIITTTQSLFIG-IFCAIVILVTKDDFSIIFT--DSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVA 318 (398)
Q Consensus 242 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 318 (398)
++....++.....++ +...+..+++++++..++. .|+|..+.+.++++++.++.++..+.....+++|+.||.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (502)
T TIGR01695 78 RRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPS 157 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHH
Confidence 777777666555444 4456777888999999883 3567678899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHhhCCCcchhh--HHHHHHHHHHHHHHHHHHhhc
Q 015884 319 YINLFCYYVVGLPFGFLLGYKLKFGVQGIW--IGMICGTLLQTLILLYIVYKT 369 (398)
Q Consensus 319 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~--~a~~~~~~~~~~~~~~~~~~~ 369 (398)
..+++.. +.++....++ .+++|..|++ +++.++..+..+...++++|+
T Consensus 158 ~~~i~~~-i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 207 (502)
T TIGR01695 158 FSPILFN-IGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKA 207 (502)
T ss_pred HHHHHHH-HHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999887 5665544333 3458999998 999999999888776665543
No 28
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.39 E-value=5.2e-10 Score=97.68 Aligned_cols=210 Identities=16% Similarity=0.161 Sum_probs=147.6
Q ss_pred hhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 015884 4 ALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNFPS 83 (398)
Q Consensus 4 g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 83 (398)
|....+.+. .++|+++.++..+.......+.+++..++ ...+...++ +++. ..++....+..++.......
T Consensus 40 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~ 110 (251)
T PF13440_consen 40 GLRQSLVRS-AARDKQDIRSLLRFSLLVSLLLAVILAIL---AILIAYFFG-DPEL----FWLLLLLALAIFFSALSQLF 110 (251)
T ss_pred HHHHHHHHh-hccCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhC-ChhH----HHHHHHHHHHHHHHHHHHHH
Confidence 444444442 34556666666666655544444444332 112222332 3322 33455677788888999999
Q ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhhhhccccCCCCHHhHhhH
Q 015884 84 QKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLSWLAFKDI 163 (398)
Q Consensus 84 ~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (398)
++.+++++|.+.....++...+....+..++.. .+.+..+..++..+++.+..++.....+++ .+. +. +.+.
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~---~~~~- 182 (251)
T PF13440_consen 111 RSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRK--LRL-SF---KFSW- 182 (251)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhccc--cCC-Cc---hhhH-
Confidence 999999999999999999999888555444443 344888899999999888777665533211 111 11 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 015884 164 WGFVRLSIASAIMLCLEIWYFMTIIVLTGH-LEDPVIAVGSLSICMNINGWEG-MLFLGINAAISVRVSNE 232 (398)
Q Consensus 164 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~a~~~i~~~i~~~~~-~~~~~i~~~~~p~~s~~ 232 (398)
++.++.+.|.....+........|..+++. +| ++++|.|+++.++...+. .+..++++...|.++|.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 183 RRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--PEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 237999999999999999999999999998 65 889999999999999888 89999999999999863
No 29
>PRK15099 O-antigen translocase; Provisional
Probab=99.39 E-value=2.2e-11 Score=114.60 Aligned_cols=193 Identities=15% Similarity=0.133 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCchHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChhHHHH
Q 015884 166 FVRLSIASAIMLCLEIWYFMTII-VLTGHLEDPVIAVGSLSICMNINGWEGML-FLGINAAISVRVSNELGSSHPRAAKY 243 (398)
Q Consensus 166 ~l~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~a~~~i~~~i~~~~~~~-~~~i~~~~~p~~s~~~g~~~~~~~~~ 243 (398)
+.|-+...............+.. ++...+| +++.|.++..+.+..+...+ ..|++++....++++ ++|+++.++
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg--~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~ 78 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFG--PAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRA 78 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHH
Confidence 34445555555566665444544 4445567 77888888888877766655 777888888888887 688899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHH
Q 015884 244 SVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLF 323 (398)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 323 (398)
....++...+..+++.+++.+.+.+++...+.+||+ . ..++.+..+..++........+.+++.||++.++...+.
T Consensus 79 ~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~ 154 (416)
T PRK15099 79 VVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIV 154 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988877765 2 234666666666777888999999999999999999988
Q ss_pred HHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhc
Q 015884 324 CYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKT 369 (398)
Q Consensus 324 ~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 369 (398)
+. ++++.+ +++... ..|+.|+++|+.+++.+..+...++++|+
T Consensus 155 ~~-~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~ 197 (416)
T PRK15099 155 GS-LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRR 197 (416)
T ss_pred HH-HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88 788766 333332 14999999999999999877666655543
No 30
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.31 E-value=5.7e-10 Score=105.48 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=131.3
Q ss_pred chhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHH
Q 015884 2 ASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLLG----QRDDIAEFAGTFAIQVIPQMFS 76 (398)
Q Consensus 2 ~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~y~~~~~~~~~~ 76 (398)
++..-|..||...++|.++.++.+++++...+.+.++.++. ..+++|+.+.+. -++|..+.....+.++++++|+
T Consensus 255 ~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~ 334 (451)
T PF03023_consen 255 STVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPF 334 (451)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 45667888999999999999999999999999999999865 889999998773 3677788899999999999999
Q ss_pred HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhhhhc
Q 015884 77 LAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCK 149 (398)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~ 149 (398)
..+...+...+.+++|+|.++..++++.++|++++.++... +|..|.++|+.++..+..+...+.++|+.+
T Consensus 335 ~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 335 YALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999877755 899999999999999999998888776543
No 31
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.28 E-value=1.5e-12 Score=105.65 Aligned_cols=112 Identities=22% Similarity=0.399 Sum_probs=106.6
Q ss_pred chhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHH
Q 015884 2 ASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFN 80 (398)
Q Consensus 2 ~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
++|.++.+||++|++|+|+.++.++.++.+..+.+++..++ ..+.+++..+++.|+|..+.+..|+++..++.|+..+.
T Consensus 49 ~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (162)
T PF01554_consen 49 ATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALF 128 (162)
T ss_dssp HHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHH
Confidence 67899999999999999999999999999999999999876 88889999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHH-HHHHHHHHH
Q 015884 81 FPSQKFLQAQSKVGVLAWIGLAAF-VVHIGMLYF 113 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~~~~~ 113 (398)
...++++|+.||++.+++.++++. ++|++++++
T Consensus 129 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 129 FVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 999999999999999999999999 999998874
No 32
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.26 E-value=6e-09 Score=97.60 Aligned_cols=146 Identities=13% Similarity=0.080 Sum_probs=128.5
Q ss_pred chhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHH
Q 015884 2 ASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLLG----QRDDIAEFAGTFAIQVIPQMFS 76 (398)
Q Consensus 2 ~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~y~~~~~~~~~~ 76 (398)
++.+.|..||...++|.++.++....++.+++++.++.+.+ ..+++|+.+.+. -+++....+...+....+++++
T Consensus 289 ~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~ 368 (518)
T COG0728 289 STVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIP 368 (518)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHH
Confidence 46677899999999999999999999999999999999865 899999998762 2566677788889999999999
Q ss_pred HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhhhhc
Q 015884 77 LAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCK 149 (398)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~ 149 (398)
..+..++...+.++||+|.|+++.+++.++|+.++..+... +|..|.++++.++..+....+++.++|+..
T Consensus 369 ~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~ 439 (518)
T COG0728 369 FALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLV 439 (518)
T ss_pred HHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999666644 677789999999998988888877776543
No 33
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.02 E-value=2.3e-07 Score=88.67 Aligned_cols=204 Identities=11% Similarity=0.067 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCh-
Q 015884 163 IWGFVRLSIASAIMLCLEIWYFMTIIVLTGH--LEDPVIAVGSLSICMNINGWE-GMLFLGINAAISVRVSNELGSSHP- 238 (398)
Q Consensus 163 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~a~~~i~~~i~~~~-~~~~~~i~~~~~p~~s~~~g~~~~- 238 (398)
-+++++.......+.+.-.+.+..|..++.. +.+ .++-|.|+++++..++. ..+...+-.+.....++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~ 330 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSK 330 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCch
Confidence 4678999999999999999999999988887 554 77889999999998854 466778888888888888766543
Q ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Q 015884 239 --------RAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVG 310 (398)
Q Consensus 239 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 310 (398)
++..+.+...++....+++.+...-...++.+++++.++.=....+...+++++...++.+++.+...++++
T Consensus 331 ~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s 410 (549)
T PF04506_consen 331 KKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFS 410 (549)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 345666777777777777776666666777777777543211222467799999999999999999999999
Q ss_pred cCcchhhHHHH---HHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhc
Q 015884 311 GGWQALVAYIN---LFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKT 369 (398)
Q Consensus 311 ~g~~~~~~~~~---~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 369 (398)
..+.+.....+ .... ++.+..++++... ++|..|..+|..+...++.+.+..+++|.
T Consensus 411 ~a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 411 VASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred hCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98877654333 2233 4566777888765 68999999999999999999998887664
No 34
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=2.5e-06 Score=76.78 Aligned_cols=300 Identities=14% Similarity=0.034 Sum_probs=191.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHh-hcc-cccchhhHHHHHHHHHHHHHHHHHH
Q 015884 67 AIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIH-MLN-WGTAGAAAAYNISALGISIGQMIYV 144 (398)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~-~~~-~g~~g~a~a~~i~~~~~~~~~~~~~ 144 (398)
+.+...+...-.+...+.-..|...+.+.-.+...+...+.-+..+..+. +.+ .++..-|+|.+.......++..+++
T Consensus 126 I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Y 205 (530)
T KOG2864|consen 126 IFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFY 205 (530)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44445555555555566666677777777777777777776444443333 322 4555566666666554444333333
Q ss_pred hhhhc--cc----------cCCCCHH--hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHHhhhhhHHHHH
Q 015884 145 VRYCK--DG----------WKGLSWL--AFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLED-PVIAVGSLSICMN 209 (398)
Q Consensus 145 ~~~~~--~~----------~~~~~~~--~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~ 209 (398)
.+..+ +. .++.... ...--++..+.......+...-++.+-.+..++....- .-.+-|.|.++++
T Consensus 206 f~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n 285 (530)
T KOG2864|consen 206 FYIRGSIPETEPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSN 285 (530)
T ss_pred HHHcCCcccccchhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHh
Confidence 32222 00 0010000 00122457777777778888888877777776663211 0235667988888
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH---HHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHH
Q 015884 210 INGW-EGMLFLGINAAISVRVSNELGSSHPRAAKYSV---IITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVA 285 (398)
Q Consensus 210 i~~~-~~~~~~~i~~~~~p~~s~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 285 (398)
..++ ..++...+-.......+|...+++.|+.++.. ...++....+++.+...-...+++.+.+++++.=....+.
T Consensus 286 ~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~ 365 (530)
T KOG2864|consen 286 YGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGS 365 (530)
T ss_pred hhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCch
Confidence 8774 44667888888888888888887777666554 4445555555555555555667777777765321112244
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHH---HHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHH
Q 015884 286 DLASLLGITMLLNSVQPVISGVAVGGGWQALVAY---INLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLIL 362 (398)
Q Consensus 286 ~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~ 362 (398)
..+++++...++.+++.+..++..+.++.+.... ..+... ++.+.++|++... +|..|...|.++...++-+..
T Consensus 366 ~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafS-viflilsylL~~~--~~~~GlIlANiiNm~lRIlys 442 (530)
T KOG2864|consen 366 LLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFS-VIFLILSYLLIRW--FGLVGLILANIINMSLRILYS 442 (530)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHH-HHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999887766532 223333 6777889999887 888999999999998888777
Q ss_pred HHHHhhc
Q 015884 363 LYIVYKT 369 (398)
Q Consensus 363 ~~~~~~~ 369 (398)
..++++.
T Consensus 443 ~~fI~~~ 449 (530)
T KOG2864|consen 443 LRFIRHY 449 (530)
T ss_pred HHHHHHH
Confidence 6666554
No 35
>PRK10459 colanic acid exporter; Provisional
Probab=98.85 E-value=3.3e-06 Score=81.51 Aligned_cols=136 Identities=12% Similarity=0.021 Sum_probs=109.4
Q ss_pred hhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 015884 5 LETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNFPS 83 (398)
Q Consensus 5 ~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 83 (398)
..|..|+. ++|+++.++.+.+.+.....++++..++ ...++|++..+.+++ ...+...++++.+...+..+....
T Consensus 268 ~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~ 343 (492)
T PRK10459 268 AFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPI 343 (492)
T ss_pred HhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555664 5678888999999998888888887764 778888888775543 355678889999999999999999
Q ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhh
Q 015884 84 QKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVR 146 (398)
Q Consensus 84 ~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 146 (398)
...+++.||.|.+...+++.+++++...+.+.. .+|+.|+++++.+++.+......++..|
T Consensus 344 ~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 344 GSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHcCccchhHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888888776555543 4699999999999999888877776644
No 36
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.61 E-value=6.5e-06 Score=79.17 Aligned_cols=126 Identities=23% Similarity=0.244 Sum_probs=108.6
Q ss_pred chhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHH
Q 015884 2 ASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFN 80 (398)
Q Consensus 2 ~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
+...-|..+|...++|+++.++..++++......+++..++ ..+++|+...+.+++.. .+...+.++.+..++..+.
T Consensus 270 ~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~ 347 (480)
T COG2244 270 NRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLV 347 (480)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999998875 78888998877555432 2566788999999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHH
Q 015884 81 FPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNIS 132 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~ 132 (398)
......+++.++.+.....+.++.++|.+++.+++.. .|..|++.++ .+
T Consensus 348 ~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 348 SLTSSLLQALGKQRLLLLISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 9999999999999999999999999999999998854 7888999988 44
No 37
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.54 E-value=2.2e-05 Score=62.22 Aligned_cols=80 Identities=26% Similarity=0.250 Sum_probs=72.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhh
Q 015884 67 AIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVR 146 (398)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 146 (398)
+++.+++.++..+.....+.+++.||++......+++.++|++++++++. .+|..|+++|+.+++.+......++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999974 4899999999999999998888877775
Q ss_pred hh
Q 015884 147 YC 148 (398)
Q Consensus 147 ~~ 148 (398)
+.
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 43
No 38
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.39 E-value=0.00012 Score=64.59 Aligned_cols=187 Identities=18% Similarity=0.215 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChhHHHHHH
Q 015884 168 RLSIASAIMLCLEIWYFMTIIVLTG-HLEDPVIAVGSLSICMNINGWEGML-FLGINAAISVRVSNELGSSHPRAAKYSV 245 (398)
Q Consensus 168 ~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~a~~~i~~~i~~~~~~~-~~~i~~~~~p~~s~~~g~~~~~~~~~~~ 245 (398)
|-+......+........+...+.. .+| +++.|.|+....+..+...+ ..|+.++..-..++...+ .++.++..
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~--~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLG--PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 4444455555565555555554444 466 88999999999998877765 778888888877776432 23333343
Q ss_pred HHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHH
Q 015884 246 IITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCY 325 (398)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 325 (398)
........+.++....... +...+.. ++.... +........++..........+++.++.+.....++...
T Consensus 79 ~~~~~~~~~~~~i~~~~~~-----~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILL-----IASFFGN-PSLSLI---LIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHcCC-chHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333222222222 2223333 332211 122222222577888888999999999999988888887
Q ss_pred HhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhc
Q 015884 326 YVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKT 369 (398)
Q Consensus 326 ~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 369 (398)
+..+.....+... +.+..+...+..++..+..+......+|+
T Consensus 150 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (273)
T PF01943_consen 150 -LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRK 191 (273)
T ss_pred -HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5665555554443 23488888999999988877777776653
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.33 E-value=3.8e-06 Score=66.62 Aligned_cols=79 Identities=16% Similarity=0.306 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHh
Q 015884 288 ASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVY 367 (398)
Q Consensus 288 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 367 (398)
+++++++.++.+.......++++.||+|..+..++.+. ++++++++.+.+. +|..|+++++.+++.+......+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999 9999999999765 99999999999999999998888888
Q ss_pred hc
Q 015884 368 KT 369 (398)
Q Consensus 368 ~~ 369 (398)
|+
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 75
No 40
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.19 E-value=0.00075 Score=58.64 Aligned_cols=162 Identities=19% Similarity=0.283 Sum_probs=103.7
Q ss_pred HHHHhcCCchHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 015884 188 IVLTGHLEDPVIAVGSLSICMNINGWEGML-FLGINAAISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVT 266 (398)
Q Consensus 188 ~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~-~~~i~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (398)
.++...++ +++.|.|+....+..+...+ ..|+.+.. .+ ..++|+++.++..+.......+.+++..++.
T Consensus 9 ~~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (251)
T PF13440_consen 9 ILLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSL----VR-SAARDKQDIRSLLRFSLLVSLLLAVILAILA--- 78 (251)
T ss_pred HHHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HH-hhccCHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34445567 88999999998888877765 34443333 22 2345666666666666655444444443332
Q ss_pred hhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhhhHHHHHHHhhCCCcch
Q 015884 267 KDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQG 346 (398)
Q Consensus 267 ~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G 346 (398)
..+...+ ++++ ...++....+..++........+.+++.+|.+.......... +..+.....+.. .+.+..+
T Consensus 79 -~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~ 150 (251)
T PF13440_consen 79 -ILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLY-LGLNLWS 150 (251)
T ss_pred -HHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHH-HHhhHHH
Confidence 2222233 3333 233456677778888999999999999999999998888887 555333333332 2247888
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 015884 347 IWIGMICGTLLQTLILLYIVY 367 (398)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~ 367 (398)
..++..++.++..+......+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 151 ILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 888988888887766655444
No 41
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.04 E-value=0.0056 Score=53.36 Aligned_cols=213 Identities=12% Similarity=0.052 Sum_probs=123.4
Q ss_pred HHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhh-cc--cccchhhH
Q 015884 51 KLLGQRDDIAEFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHM-LN--WGTAGAAA 127 (398)
Q Consensus 51 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~-~~--~g~~g~a~ 127 (398)
..++.+++..+.++..+.++.+--++..+...+++++-=++++......++......+++..+++.. ++ -+..-..+
T Consensus 116 ~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil 195 (345)
T PF07260_consen 116 DLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPIL 195 (345)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHH
Confidence 4568899999999999999999999999999999988866666666555555555555554445422 11 11111123
Q ss_pred HHHHHHHHHHHHH-HHHH--hhhhccccCCCCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCch---HHh
Q 015884 128 AYNISALGISIGQ-MIYV--VRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGH-LEDP---VIA 200 (398)
Q Consensus 128 a~~i~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~g---~~~ 200 (398)
+...+..+.+-+. +-|+ .++..+...+.+..+...+++++++.+|.+.....+.....+.+.++++ +++. +++
T Consensus 196 ~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~a 275 (345)
T PF07260_consen 196 ALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEA 275 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhh
Confidence 3333333222221 2222 1222222223334445678899999999999999999988888888888 5542 255
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 015884 201 VGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRA-----AKYSVIITTTQSLFIGIFCAIVIL 264 (398)
Q Consensus 201 ~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 264 (398)
+|...+.+++.-..+...+-+ .+..|..-++--+++..+ .+..+++....+..+++..+..++
T Consensus 276 vavl~~~ypvgh~~y~w~~~~-r~~~paf~~~~~~~~~~~~~~~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 276 VAVLTATYPVGHMPYGWLTEL-RAVYPAFDKNNPQNKLRNCGNPVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred hhhhccccCCCcCcchhHHhH-HhhCchhhccCcccccccccCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666555555544433322221 233343322211222211 233666777777777766665554
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.00 E-value=0.0042 Score=54.09 Aligned_cols=168 Identities=13% Similarity=0.088 Sum_probs=111.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015884 159 AFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGH-LEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSH 237 (398)
Q Consensus 159 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g~~~ 237 (398)
....++++.++-+|.+++.....+.-++.+--+++ ..+..+.+|+|+++..+.-++..+...+-+.....+.+ +
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~ 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----K 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----h
Confidence 34677889999999999999988888776666655 33334669999999999999999998888877766543 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-----HHHchhhh-hhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Q 015884 238 PRAAKYSVIITTTQSLFIGIFCAIV-----ILVTKDDF-SIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGG 311 (398)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i-~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 311 (398)
.++ ++... .....+...++. .--++..+ -.++.-||++.+.+...+.++.+..+++++.....+++-=.
T Consensus 81 rsr-r~~vl----~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~ 155 (345)
T PF07260_consen 81 RSR-RKAVL----CMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKH 155 (345)
T ss_pred hhh-HHHHH----HHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 222 12222 222222222222 22233333 34556789999999999999999999999999999887744
Q ss_pred CcchhhHHHHHHHHHhhhhhHHHHHH
Q 015884 312 GWQALVAYINLFCYYVVGLPFGFLLG 337 (398)
Q Consensus 312 g~~~~~~~~~~~~~~~~~i~~~~~l~ 337 (398)
+++......++... ...+.....+.
T Consensus 156 r~s~iV~~aSI~~v-~~qvV~v~~ll 180 (345)
T PF07260_consen 156 RHSWIVGSASIADV-IAQVVLVAILL 180 (345)
T ss_pred cceeEeehHHHHHH-HHHHHHHHHHH
Confidence 55555544444433 33343333333
No 43
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.40 E-value=0.0097 Score=57.52 Aligned_cols=129 Identities=14% Similarity=0.143 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCchhHH--
Q 015884 20 LLGVYMQRSILILFVTCIFLLPL-YIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVL-- 96 (398)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 96 (398)
+..+.+...+.+...+|+++... ...++.++..++++.=..+.+...++..+..+|+.+++++..++.++....+..
T Consensus 340 ~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~ 419 (549)
T PF04506_consen 340 QAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDR 419 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHH
Confidence 45556667777777777766643 666667777765432222334566888889999999999999999998776644
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhhhhc
Q 015884 97 -AWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCK 149 (398)
Q Consensus 97 -~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~ 149 (398)
.....+..++-+..++++... ++|..|..+|..+...+..++..++.+|..+
T Consensus 420 ~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~ 472 (549)
T PF04506_consen 420 YNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYFR 472 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444556666777777765 7899999999999999999999888876543
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.18 E-value=0.16 Score=45.55 Aligned_cols=241 Identities=10% Similarity=0.074 Sum_probs=134.2
Q ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhhhhcccc-CCCCHHhHhh
Q 015884 84 QKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGW-KGLSWLAFKD 162 (398)
Q Consensus 84 ~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 162 (398)
-.++.+.+|.+.....-.++.++...+..++.. .++.|..++..++..+.......+..|..+.+. ..++.- ..
T Consensus 151 ~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~i~FdFL--~~ 225 (467)
T COG4267 151 MIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRRIGFDFL--LY 225 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccceehh--hh
Confidence 447778899998888888888888888776654 488999999999988888887777765443222 122211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhh------hHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q 015884 163 IWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGS------LSICMNINGWEGMLF-----LGINAAISVRVSN 231 (398)
Q Consensus 163 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~------~~i~~~i~~~~~~~~-----~~i~~~~~p~~s~ 231 (398)
.++. ....+.....++...+|+.+.=..++|.+..+. |-+..-.......|. ..+-+...+.--+
T Consensus 226 ~~~y----~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~lET~F~~~Yk~ 301 (467)
T COG4267 226 RRKY----PSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISLETDFQENYKE 301 (467)
T ss_pred hhcc----hHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeeeeehHHHHHHH
Confidence 1111 112233344455555555443222211222111 112111111111111 1122233332211
Q ss_pred h----hcCC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhH
Q 015884 232 E----LGSS-------HPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSV 300 (398)
Q Consensus 232 ~----~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 300 (398)
. .|.+ +.++.....++.+.-..-+-..+++.++++++.+..+++-++. ..+.+++-.++..+...
T Consensus 302 ~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF~vd~lg~s~~i~ 377 (467)
T COG4267 302 YYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLFYVDVLGVSCQIV 377 (467)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHHHHHHHHHHHHHH
Confidence 1 1212 2344455566666666777788899999999999999877543 44456666666665555
Q ss_pred HHHHHHHHhccCcchhhHHHHHHHHHhhhhhHHHHHHH
Q 015884 301 QPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGY 338 (398)
Q Consensus 301 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 338 (398)
...+-.+.--..+-+..+..+..-. +.|-.++++...
T Consensus 378 f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~ 414 (467)
T COG4267 378 FMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLE 414 (467)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHH
Confidence 5555555555666666665554443 566666666554
No 45
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.084 Score=48.52 Aligned_cols=142 Identities=14% Similarity=0.075 Sum_probs=95.7
Q ss_pred HHHhhhCCCCcch---HHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 015884 8 LCGQAFGAGQVEL---LGVYMQRSILILFVTCIFLLP-LYIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNFPS 83 (398)
Q Consensus 8 ~~s~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 83 (398)
+.+|...++++|+ +.++....+.....+|++++. +.-..++.+.+.+++.=........+++.+..+|+.+++++.
T Consensus 305 ~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGit 384 (530)
T KOG2864|consen 305 YFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGIT 384 (530)
T ss_pred HHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHH
Confidence 3455555554444 444555556666666655543 355566777777654333334446788999999999999999
Q ss_pred HHHHHHcCchhH---HHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhhhhccc
Q 015884 84 QKFLQAQSKVGV---LAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDG 151 (398)
Q Consensus 84 ~~~l~~~~~~~~---~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~ 151 (398)
.++..+....+. ......+..+.-.+.+++++-. +|..|..+|.++...+..+....+.++.+++.
T Consensus 385 EaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~ 453 (530)
T KOG2864|consen 385 EAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYYRDL 453 (530)
T ss_pred HHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999998766553 3444555666777778888766 56699999999998888888777776554433
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=91.11 E-value=12 Score=34.16 Aligned_cols=137 Identities=14% Similarity=0.120 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHH
Q 015884 216 MLFLGINAAISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITM 295 (398)
Q Consensus 216 ~~~~~i~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~ 295 (398)
.+..+++...+-.+|+..=++|.+++...+.-.+......+..++..++.. .++++ .. +=...+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~--------~~~~s---i~--yk~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFV--------NNQYS---IV--YKILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhh--------cCchh---HH--HHHHHHHHH
Confidence 346677777888888888888888888888877777777766666422221 11111 11 122334445
Q ss_pred HHhhHHHHHHHHHhccCcchhhHHHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhc
Q 015884 296 LLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKT 369 (398)
Q Consensus 296 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 369 (398)
+..+...+....+.+.+|.|.....-.++. ++.+.+..++-. .+..|.-++..++..+.......++.|.
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~ 211 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRY 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 666777788888999999999888777777 777777776654 5889999999999998877777666653
No 47
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=71.60 E-value=10 Score=26.03 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=15.4
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHhhhhcCCcccCCCCCC
Q 015884 359 TLILLYIVYKTNWNKEVEQASERMRKWGAGQDRRSDSDT 397 (398)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (398)
+...+..++|.+..++..+..+++++..+++--+++.|+
T Consensus 23 W~iv~ieYrk~~rqrkId~li~RIreraEDSGnES~Gd~ 61 (81)
T PF00558_consen 23 WTIVYIEYRKIKRQRKIDRLIERIRERAEDSGNESDGDE 61 (81)
T ss_dssp HHHH------------CHHHHHHHHCTTTCCHCTTTTCC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcccccCCCCCCCcH
Confidence 334444444555556666667777765555555555443
No 48
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=70.40 E-value=74 Score=27.83 Aligned_cols=33 Identities=6% Similarity=0.019 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 015884 215 GMLFLGINAAISVRVSNELGSSHPRAAKYSVII 247 (398)
Q Consensus 215 ~~~~~~i~~~~~p~~s~~~g~~~~~~~~~~~~~ 247 (398)
..+...+.+......-+...++|.+++++....
T Consensus 110 ~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~ 142 (265)
T TIGR00822 110 TIFVRTITVLFQHAADKAAKEANTAAISRLHVT 142 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHH
Confidence 344556677777777788888999888765443
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=67.31 E-value=39 Score=23.44 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 015884 219 LGINAAISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIF 258 (398)
Q Consensus 219 ~~i~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 258 (398)
.-++...+..+-+.+.+||++++++..+++.+++.+-...
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3344445556778888999999999999998887644333
No 50
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=65.71 E-value=31 Score=28.96 Aligned_cols=62 Identities=8% Similarity=0.020 Sum_probs=34.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH---------HHHHHHHHHHHHHhhHHHHH
Q 015884 17 QVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDD---------IAEFAGTFAIQVIPQMFSLA 78 (398)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~y~~~~~~~~~~~~ 78 (398)
+++...+.+..++...+.+-.++++++.+..|+.++++.+-- ..+....|+++++.++|-..
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 334445555566555555555555556667777777764321 12234466666666666554
No 51
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=64.59 E-value=1.2e+02 Score=28.22 Aligned_cols=38 Identities=5% Similarity=0.050 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhcc
Q 015884 237 HPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIF 274 (398)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 274 (398)
+.++.+++.+++.+.+.........++....-|+...-
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~ 126 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQV 126 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999888888888887633
No 52
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=61.94 E-value=11 Score=28.46 Aligned_cols=28 Identities=21% Similarity=0.458 Sum_probs=12.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhcCh
Q 015884 344 VQGIWIGMICGTLLQTLILLYIVYKTNW 371 (398)
Q Consensus 344 ~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (398)
+.|+.+|.+++-+...++..++++|+++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555544433344444444433
No 53
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=56.65 E-value=65 Score=26.01 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=20.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhh
Q 015884 121 GTAGAAAAYNISALGISIGQMIYVVRYC 148 (398)
Q Consensus 121 g~~g~a~a~~i~~~~~~~~~~~~~~~~~ 148 (398)
++.|...++.+++++..+....|..+..
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl~ 162 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNLT 162 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeecc
Confidence 4456778888888888888777776443
No 54
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=51.69 E-value=2.3e+02 Score=27.27 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=16.9
Q ss_pred HcCchhHHHHHHHHHHHHHHHHHHHH
Q 015884 89 AQSKVGVLAWIGLAAFVVHIGMLYFF 114 (398)
Q Consensus 89 ~~~~~~~~~~~~i~~~~~~i~~~~~l 114 (398)
-++|.+...+-...+++-+.+...++
T Consensus 144 ~~ER~~l~s~R~~~~~~g~~l~~~~~ 169 (467)
T COG2211 144 PQERASLTSWRMVFASLGGLLVAVLF 169 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777776666555444
No 55
>PF14184 YrvL: Regulatory protein YrvL
Probab=49.81 E-value=1.2e+02 Score=23.38 Aligned_cols=105 Identities=10% Similarity=0.114 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHchhhhhhccCCc-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHHh
Q 015884 249 TTQSLFIGIFCAIVILVTKDDFSIIFTDS-EEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYV 327 (398)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 327 (398)
+.....+..+.+. .++....+.++++-+ ++..+...-.+....++.++..........+.-.+-++.... .... .
T Consensus 8 i~~~l~~~~v~a~-~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~--~l~~-~ 83 (132)
T PF14184_consen 8 IIIALLLIIVFAI-YFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFI--LLAF-I 83 (132)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHH--HHHH-H
Confidence 3344444444443 444566677777642 344444545566667778888888877766665544443322 2222 6
Q ss_pred hhhhHHHHHHHhhCCCcchhhHHHHHHHHH
Q 015884 328 VGLPFGFLLGYKLKFGVQGIWIGMICGTLL 357 (398)
Q Consensus 328 ~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~ 357 (398)
+....++...+.-+.=+.+++..+..--++
T Consensus 84 id~~~t~~~i~~aD~~m~sI~is~~~e~i~ 113 (132)
T PF14184_consen 84 IDFLFTWITIYTADELMESISISTLSEIIF 113 (132)
T ss_pred HHHHHHHHHHHHHHHHhcceeeCcHHHHHH
Confidence 777777777666555566777655444444
No 56
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=38.18 E-value=3.4e+02 Score=25.33 Aligned_cols=16 Identities=6% Similarity=-0.367 Sum_probs=8.3
Q ss_pred CChhHHHHHHHHHHHH
Q 015884 236 SHPRAAKYSVIITTTQ 251 (398)
Q Consensus 236 ~~~~~~~~~~~~~~~~ 251 (398)
-|.+++.|.-++.+..
T Consensus 72 ~Dlr~i~~~g~~~l~~ 87 (378)
T PF05684_consen 72 ADLRRILRLGGRLLLA 87 (378)
T ss_pred ccHHHHHHhhHHHHHH
Confidence 4555665555544433
No 57
>PRK10739 putative antibiotic transporter; Provisional
Probab=36.24 E-value=2.5e+02 Score=23.32 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=36.5
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHH
Q 015884 227 VRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADL 287 (398)
Q Consensus 227 p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 287 (398)
|..-..-.+.++++-++..++....+ ..+.+++.++++.+.+.|+-+-+..+.+...
T Consensus 22 piflslt~~~~~~~r~~ia~~a~~~a----~~ill~f~~~G~~iL~~fGIsl~afrIAGGi 78 (197)
T PRK10739 22 PIFMSVLKHLEPKRRRAIMIRELLIA----LLVMLVFLFAGEKILAFLNLRTETVSISGGI 78 (197)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44444445566666677776655444 4445577788999999998765555555443
No 58
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=35.94 E-value=30 Score=24.06 Aligned_cols=28 Identities=29% Similarity=0.752 Sum_probs=18.9
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHhhc
Q 015884 342 FGVQGIWIGMICGTLLQTLILLYIVYKT 369 (398)
Q Consensus 342 ~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 369 (398)
+...|+|+..++..++..+++++..+++
T Consensus 30 ~~~Lgm~~lvI~~iFil~VilwfvCC~k 57 (94)
T PF05393_consen 30 WPNLGMWFLVICGIFILLVILWFVCCKK 57 (94)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888877666665555544
No 59
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=34.45 E-value=2.7e+02 Score=23.20 Aligned_cols=56 Identities=5% Similarity=-0.066 Sum_probs=34.9
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHH
Q 015884 227 VRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVAD 286 (398)
Q Consensus 227 p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 286 (398)
|.....-+..+.++-++..++.... +..+...+.++++.+.+.|+-+-+..+.+..
T Consensus 22 p~f~~lt~~~~~~~r~~ia~~a~~~----a~~ill~f~~~G~~iL~~fgIsl~af~IaGG 77 (203)
T PF01914_consen 22 PIFLSLTKGMSPKERRRIARRASII----AFIILLIFAFFGQLILNFFGISLPAFRIAGG 77 (203)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4444444445556666666665444 4445667778899999999866555555543
No 60
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=33.63 E-value=3.2e+02 Score=23.72 Aligned_cols=11 Identities=0% Similarity=-0.067 Sum_probs=5.1
Q ss_pred HHHhhhCCCCc
Q 015884 8 LCGQAFGAGQV 18 (398)
Q Consensus 8 ~~s~~~g~~~~ 18 (398)
-..+.++.+++
T Consensus 106 ~ln~i~~~~~~ 116 (259)
T TIGR00765 106 TLNKIWRVKPR 116 (259)
T ss_pred HHHHHhCCCCC
Confidence 34455554443
No 61
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=33.22 E-value=3.9e+02 Score=24.65 Aligned_cols=12 Identities=8% Similarity=-0.092 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 015884 251 QSLFIGIFCAIV 262 (398)
Q Consensus 251 ~~~~~~~~~~~~ 262 (398)
+.+-+.+|+.+.
T Consensus 36 lv~~~~lP~liF 47 (385)
T PF03547_consen 36 LVFNVFLPALIF 47 (385)
T ss_pred HHHHHHHHHHHH
Confidence 334444554433
No 62
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.18 E-value=64 Score=24.38 Aligned_cols=14 Identities=21% Similarity=0.007 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhhh
Q 015884 135 GISIGQMIYVVRYC 148 (398)
Q Consensus 135 ~~~~~~~~~~~~~~ 148 (398)
+..++++.|+.||+
T Consensus 78 Ig~Illi~y~irR~ 91 (122)
T PF01102_consen 78 IGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 63
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=31.74 E-value=1.4e+02 Score=19.36 Aligned_cols=10 Identities=20% Similarity=0.538 Sum_probs=3.9
Q ss_pred HHHhhcChHH
Q 015884 364 YIVYKTNWNK 373 (398)
Q Consensus 364 ~~~~~~~~~~ 373 (398)
++.+|...|+
T Consensus 27 ~~ayr~~~K~ 36 (60)
T COG4736 27 YFAYRPGKKG 36 (60)
T ss_pred HHHhcccchh
Confidence 3344443333
No 64
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=27.06 E-value=4.7e+02 Score=23.59 Aligned_cols=61 Identities=8% Similarity=-0.005 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcc-cccchhhHHHHHHHHHHHHH
Q 015884 79 FNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLN-WGTAGAAAAYNISALGISIG 139 (398)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~-~g~~g~a~a~~i~~~~~~~~ 139 (398)
......-.-++.||.........+++++.++..++++..+- -+-.+.-.+..+.++...+.
T Consensus 107 v~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vl 168 (313)
T PF13593_consen 107 VSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVL 168 (313)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 33333445678999999999999999999999988886432 22333344444444444433
No 65
>PF14184 YrvL: Regulatory protein YrvL
Probab=26.65 E-value=3e+02 Score=21.18 Aligned_cols=92 Identities=18% Similarity=0.117 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 015884 26 QRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFAGT-FAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAF 104 (398)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 104 (398)
...+...+...++.+........+.+++|.+-|....-.. .+.....+.|+..+...+...+.-.+-++.. ......
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~--~~~l~~ 82 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRL--FILLAF 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHH--HHHHHH
Confidence 3344444445555555556666788888876443333222 2334566777777777766655555333322 334566
Q ss_pred HHHHHHHHHHHhhcc
Q 015884 105 VVHIGMLYFFIHMLN 119 (398)
Q Consensus 105 ~~~i~~~~~li~~~~ 119 (398)
.+...+++..++.-+
T Consensus 83 ~id~~~t~~~i~~aD 97 (132)
T PF14184_consen 83 IIDFLFTWITIYTAD 97 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888777544
No 66
>PRK09546 zntB zinc transporter; Reviewed
Probab=26.56 E-value=2e+02 Score=26.09 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=21.4
Q ss_pred hhhhhHHHHHHHhhCCCc---------chhhHHHHHHHHHHHHHHHHHHhhcCh
Q 015884 327 VVGLPFGFLLGYKLKFGV---------QGIWIGMICGTLLQTLILLYIVYKTNW 371 (398)
Q Consensus 327 ~~~i~~~~~l~~~~~~g~---------~G~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (398)
.+.+|.+++-..+ ++.. .|-++...+ .++.++..+++++|++|
T Consensus 272 ~IflPlT~IaGiy-GMNf~~mPel~~~~gy~~~l~i-m~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 272 MVFLPTTFLTGLF-GVNLGGIPGGGWPFGFSIFCLL-LVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHHhhh-ccccCCCCCcCCcchHHHHHHH-HHHHHHHHHHHHHhccc
Confidence 3555777765543 1211 233333333 33445556667777776
No 67
>PRK01637 hypothetical protein; Reviewed
Probab=25.99 E-value=4.6e+02 Score=23.17 Aligned_cols=12 Identities=8% Similarity=-0.000 Sum_probs=5.4
Q ss_pred HHHHHHhhcCCC
Q 015884 226 SVRVSNELGSSH 237 (398)
Q Consensus 226 ~p~~s~~~g~~~ 237 (398)
.--..+.++.++
T Consensus 113 ~~a~N~i~~~~~ 124 (286)
T PRK01637 113 DKALNTIWRSKR 124 (286)
T ss_pred HHHHHHHhCCCC
Confidence 333444555444
No 68
>PTZ00370 STEVOR; Provisional
Probab=25.79 E-value=1.2e+02 Score=26.66 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=18.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhc---ChHHHH
Q 015884 344 VQGIWIGMICGTLLQTLILLYIVYKT---NWNKEV 375 (398)
Q Consensus 344 ~~G~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~ 375 (398)
-.|++.-..+--.+..++++++++|+ .|+++.
T Consensus 256 Pygiaalvllil~vvliilYiwlyrrRK~swkhe~ 290 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWLYRRRKNSWKHEC 290 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 34555555555556566666666665 355443
No 69
>PRK11111 hypothetical protein; Provisional
Probab=25.76 E-value=4.1e+02 Score=22.44 Aligned_cols=57 Identities=7% Similarity=-0.020 Sum_probs=34.2
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHH
Q 015884 227 VRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADL 287 (398)
Q Consensus 227 p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 287 (398)
|..-..-.+.+.++-++..++.... ...+..++.++++++.++|+=+-+..+.+...
T Consensus 28 piflslt~~~s~~~r~~ia~~a~l~----a~~ill~f~~~G~~iL~~fGIsl~afrIaGGi 84 (214)
T PRK11111 28 PVFISMTSHQTAAERNKTNLTANLS----VAIILLISLFLGDFILNLFGISIDSFRIAGGI 84 (214)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3333344445556666666655443 44445567788999999998665555555433
No 70
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=25.41 E-value=2.3e+02 Score=25.47 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhcCh
Q 015884 355 TLLQTLILLYIVYKTNW 371 (398)
Q Consensus 355 ~~~~~~~~~~~~~~~~~ 371 (398)
.++.++..+++++|++|
T Consensus 301 m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 301 MAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 33445566777788777
No 71
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=25.15 E-value=1.1e+02 Score=26.94 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhhhccccC
Q 015884 130 NISALGISIGQMIYVVRYCKDGWK 153 (398)
Q Consensus 130 ~i~~~~~~~~~~~~~~~~~~~~~~ 153 (398)
++.-.+..++++++++||++..|+
T Consensus 268 llil~vvliiLYiWlyrrRK~swk 291 (295)
T TIGR01478 268 LIILTVVLIILYIWLYRRRKKSWK 291 (295)
T ss_pred HHHHHHHHHHHHHHHHHhhccccc
Confidence 333345555566666666666664
No 72
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=25.07 E-value=4.1e+02 Score=22.17 Aligned_cols=57 Identities=9% Similarity=-0.010 Sum_probs=35.4
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHH
Q 015884 227 VRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADL 287 (398)
Q Consensus 227 p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 287 (398)
|.....-+..+.++-++..++... .+....+.+.++++.+.+.|+=+-+....+...
T Consensus 25 pvfl~lt~~~~~~~r~~ia~~~~l----~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGi 81 (201)
T TIGR00427 25 PIFISLTEYYTAAERNKIAKKANI----SSFIILLIFLVFGDTILKLFGISIDAFRIAGGI 81 (201)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 444445555566666666665544 444445677788999999998665545555433
No 73
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=23.71 E-value=6e+02 Score=23.67 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=27.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Q 015884 17 QVELLGVYMQRSILILFVTCIFLLPL-YIFATPILK 51 (398)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 51 (398)
++++.+++++.+...+.+...+...+ .....|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999998887754 666777766
No 74
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=23.27 E-value=5.4e+02 Score=24.56 Aligned_cols=75 Identities=17% Similarity=0.056 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 015884 170 SIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRAAKYSVIITT 249 (398)
Q Consensus 170 ~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g~~~~~~~~~~~~~~~ 249 (398)
+-|..++.+.--+....-.++.+...+|+.+++-+ .-..+.|++......+++.+|+.+..+-+|...-++
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ral~~l---------aGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRALALL---------AGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhhhhhh---------hhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 45555554444444444445555544344444332 233578999999999999999999999888887766
Q ss_pred HHHH
Q 015884 250 TQSL 253 (398)
Q Consensus 250 ~~~~ 253 (398)
...+
T Consensus 450 Afiv 453 (510)
T KOG2468|consen 450 AFIV 453 (510)
T ss_pred HHHH
Confidence 4433
No 75
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=22.67 E-value=3.7e+02 Score=20.89 Aligned_cols=31 Identities=6% Similarity=0.174 Sum_probs=17.3
Q ss_pred hHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHH
Q 015884 6 ETLCGQAFGAGQVELLGVYMQRSILILFVTCIFL 39 (398)
Q Consensus 6 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (398)
.-.++|.+| ++++++...-++...++..+..
T Consensus 14 ~Dii~E~yG---~~~a~~~i~~g~~~~~~~~~~~ 44 (145)
T PF02592_consen 14 TDIISEVYG---KKAARKAIWIGFLANLLFSLLI 44 (145)
T ss_pred HHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777 4555566655555555554333
No 76
>PRK10739 putative antibiotic transporter; Provisional
Probab=21.44 E-value=4.8e+02 Score=21.69 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=33.0
Q ss_pred hHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHH
Q 015884 6 ETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFA 63 (398)
Q Consensus 6 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 63 (398)
.+..-....+.++++.++..++.........+ +..++.+.+++.+|.+-+....+
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~~~a~~ill---~f~~~G~~iL~~fGIsl~afrIA 75 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIRELLIALLVML---VFLFAGEKILAFLNLRTETVSIS 75 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCHHHHHHH
Confidence 33444445555667777777766544443332 33567788999999886654443
No 77
>PTZ00370 STEVOR; Provisional
Probab=20.99 E-value=1.1e+02 Score=26.85 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhhhhccccC
Q 015884 130 NISALGISIGQMIYVVRYCKDGWK 153 (398)
Q Consensus 130 ~i~~~~~~~~~~~~~~~~~~~~~~ 153 (398)
++.-.+..++++++++||++..|+
T Consensus 264 llil~vvliilYiwlyrrRK~swk 287 (296)
T PTZ00370 264 LLILAVVLIILYIWLYRRRKNSWK 287 (296)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhH
Confidence 333344555556666665555553
No 78
>PRK10995 inner membrane protein; Provisional
Probab=20.71 E-value=5.2e+02 Score=21.85 Aligned_cols=55 Identities=9% Similarity=0.007 Sum_probs=33.8
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHH
Q 015884 227 VRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVA 285 (398)
Q Consensus 227 p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 285 (398)
|..-..-+..+.++-++..++... .+..+.++..+.++.+.+.|+-+.+..+.+.
T Consensus 26 pif~~lt~~~~~~~r~~ia~~~~~----~a~~ill~f~~~G~~il~~fgIs~~a~rIaG 80 (221)
T PRK10995 26 ALFLGLSGNMTPEERNRQALMASV----YVFAIMMVAFYAGQLVMSTFGISIPGLRIAG 80 (221)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444444444566666666665544 4444556777789999999986655455444
No 79
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=20.68 E-value=7.3e+02 Score=23.94 Aligned_cols=84 Identities=14% Similarity=0.164 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhccCcchhhHHHHHHHHH--hhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHH
Q 015884 283 AVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYY--VVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTL 360 (398)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~--~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~ 360 (398)
...+.++-++.+..+-++..+...+.--..+.+........... ++..|+.-.+... .+|-..+.+.....-++-.+
T Consensus 132 ~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~ 210 (466)
T KOG2532|consen 132 LVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFI 210 (466)
T ss_pred HHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHH
Confidence 34455555666666666666666666656666665544433321 4455555555432 36778888776666666444
Q ss_pred HHHHHHh
Q 015884 361 ILLYIVY 367 (398)
Q Consensus 361 ~~~~~~~ 367 (398)
...++.+
T Consensus 211 ~w~~~~~ 217 (466)
T KOG2532|consen 211 LWFLFYS 217 (466)
T ss_pred HHHHHhc
Confidence 4444444
No 80
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=20.48 E-value=5.1e+02 Score=21.61 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=31.7
Q ss_pred HHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHH
Q 015884 7 TLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEF 62 (398)
Q Consensus 7 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 62 (398)
+.....-+..|+++.++...++.....+..+. ..++.+++++.+|.+-+....
T Consensus 22 p~f~~lt~~~~~~~r~~ia~~a~~~a~~ill~---f~~~G~~iL~~fgIsl~af~I 74 (203)
T PF01914_consen 22 PIFLSLTKGMSPKERRRIARRASIIAFIILLI---FAFFGQLILNFFGISLPAFRI 74 (203)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCHHHHHH
Confidence 34444445556666666666655444433333 346778899999988665443
No 81
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=20.06 E-value=4.2e+02 Score=20.51 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHHhhCCCcchhhHHHHHHHHH
Q 015884 327 VVGLPFGFLLGYKLKFGVQGIWIGMICGTLL 357 (398)
Q Consensus 327 ~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~ 357 (398)
.+.....|++.........-.+.+..++.++
T Consensus 67 ~La~~~iW~~~~~~~~~~~~~~~~allsA~~ 97 (136)
T PF10710_consen 67 GLAFLVIWLMGYILTGNYVSIAWAALLSAVL 97 (136)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 4445555555544222223334444444443
Done!