Query 015884
Match_columns 398
No_of_seqs 233 out of 1881
Neff 10.6
Searched_HMMs 13730
Date Mon Mar 25 04:12:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015884.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015884hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 10.5 1.3E+02 0.0093 16.8 3.0 12 157-168 17-28 (56)
2 d1nkzb_ f.3.1.1 (B:) Light-har 9.1 1.4E+02 0.01 15.2 4.4 34 237-270 7-40 (41)
3 d2iuba2 f.17.3.1 (A:286-349) M 7.8 2E+02 0.015 16.1 3.9 8 346-353 41-48 (64)
4 d1lghb_ f.3.1.1 (B:) Light-har 5.9 2.2E+02 0.016 14.8 4.2 32 238-269 11-42 (43)
5 d1m56d_ f.23.8.1 (D:) Bacteria 4.5 2.8E+02 0.02 14.2 4.9 32 233-264 4-35 (42)
6 d1ijdb_ f.3.1.1 (B:) Light-har 4.5 2.7E+02 0.019 14.0 4.4 32 237-268 8-39 (40)
7 d2fyuk1 f.23.15.1 (K:1-53) Sub 4.3 2.8E+02 0.02 15.1 2.2 29 9-37 2-30 (53)
8 d1jo5a_ f.3.1.1 (A:) Light-har 3.7 3.6E+02 0.026 14.3 2.9 32 238-269 16-47 (48)
9 d1qled_ f.23.8.1 (D:) Bacteria 3.6 3.5E+02 0.025 14.0 4.9 30 234-263 6-35 (43)
10 d1pv7a_ f.38.1.2 (A:) Lactose 3.2 8.6E+02 0.063 18.0 21.5 28 342-369 376-403 (417)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=10.45 E-value=1.3e+02 Score=16.85 Aligned_cols=12 Identities=0% Similarity=-0.089 Sum_probs=5.9
Q ss_pred HHhHhhHHHHHH
Q 015884 157 WLAFKDIWGFVR 168 (398)
Q Consensus 157 ~~~~~~~~~~l~ 168 (398)
+|+++|.+++.+
T Consensus 17 KP~~~Ef~~ia~ 28 (56)
T d1rh5b_ 17 KPTKDEYLAVAK 28 (56)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 344555554444
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=9.12 E-value=1.4e+02 Score=15.23 Aligned_cols=34 Identities=12% Similarity=0.026 Sum_probs=25.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhh
Q 015884 237 HPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDF 270 (398)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (398)
+.++..+....+.+.-..++++.=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 3578888888888888888877777776666553
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=7.83 E-value=2e+02 Score=16.13 Aligned_cols=8 Identities=13% Similarity=0.115 Sum_probs=2.9
Q ss_pred hhhHHHHH
Q 015884 346 GIWIGMIC 353 (398)
Q Consensus 346 G~~~a~~~ 353 (398)
|.++...+
T Consensus 41 ~~~~~~~~ 48 (64)
T d2iuba2 41 GYPVVLAV 48 (64)
T ss_dssp -CHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=5.90 E-value=2.2e+02 Score=14.81 Aligned_cols=32 Identities=13% Similarity=0.057 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHchhh
Q 015884 238 PRAAKYSVIITTTQSLFIGIFCAIVILVTKDD 269 (398)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (398)
-++..+.+.++...-..++++.=++.+...|+
T Consensus 11 A~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 11 AIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45677778888777777777766666655543
No 5
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.51 E-value=2.8e+02 Score=14.25 Aligned_cols=32 Identities=6% Similarity=0.039 Sum_probs=18.1
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015884 233 LGSSHPRAAKYSVIITTTQSLFIGIFCAIVIL 264 (398)
Q Consensus 233 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (398)
.|+-|.+.-+|.+.--+++..-.++.+.++++
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i~~li 35 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIVAALI 35 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666665555444443333
No 6
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=4.49 E-value=2.7e+02 Score=14.01 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=22.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHchh
Q 015884 237 HPRAAKYSVIITTTQSLFIGIFCAIVILVTKD 268 (398)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (398)
+.++..+....+.+.-..++++.=++.+...+
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 35678888888888877777766665554443
No 7
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.33 E-value=2.8e+02 Score=15.12 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=18.0
Q ss_pred HHhhhCCCCcchHHHHHHHHHHHHHHHHH
Q 015884 9 CGQAFGAGQVELLGVYMQRSILILFVTCI 37 (398)
Q Consensus 9 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~~ 37 (398)
+++.+|.+..+.++.-..+...+....++
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~gl 30 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGAV 30 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhhe
Confidence 46677776666666666666655554443
No 8
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.74 E-value=3.6e+02 Score=14.35 Aligned_cols=32 Identities=3% Similarity=-0.070 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHchhh
Q 015884 238 PRAAKYSVIITTTQSLFIGIFCAIVILVTKDD 269 (398)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (398)
-++..+.+..+...-..++++.=++.+...|+
T Consensus 16 A~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 16 AQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45667777777777666666666666655543
No 9
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=3.60 E-value=3.5e+02 Score=13.96 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=16.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015884 234 GSSHPRAAKYSVIITTTQSLFIGIFCAIVI 263 (398)
Q Consensus 234 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (398)
|+-|.+.-+|.+.--+++..-.++.+.+++
T Consensus 6 G~MDi~vQEkTF~gFi~~~t~~~i~~i~~l 35 (43)
T d1qled_ 6 GEMDIRHQQATFAGFIKGATWVSILSIAVL 35 (43)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666555444443333
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.23 E-value=8.6e+02 Score=17.96 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=13.9
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHhhc
Q 015884 342 FGVQGIWIGMICGTLLQTLILLYIVYKT 369 (398)
Q Consensus 342 ~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 369 (398)
+|.....+...+..++..++..+.++++
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 376 IGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 5665555544444444444544444433
Done!