Query 015886
Match_columns 398
No_of_seqs 242 out of 2766
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 01:48:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.8 1.4E-21 2.9E-26 167.1 -1.9 275 12-323 98-391 (419)
2 KOG4341 F-box protein containi 99.7 1E-19 2.2E-24 162.3 -4.6 300 8-349 67-437 (483)
3 PLN00113 leucine-rich repeat r 99.4 9.2E-13 2E-17 139.6 9.6 233 114-349 93-367 (968)
4 PLN03210 Resistant to P. syrin 99.4 2.7E-12 5.9E-17 136.9 12.2 93 252-345 778-876 (1153)
5 PLN00113 leucine-rich repeat r 99.3 1.5E-11 3.2E-16 130.5 9.2 232 114-350 69-320 (968)
6 KOG3207 Beta-tubulin folding c 99.2 1.1E-12 2.4E-17 118.4 -3.8 191 137-328 119-335 (505)
7 KOG2120 SCF ubiquitin ligase, 99.1 4.3E-12 9.3E-17 109.4 -1.1 219 110-348 155-397 (419)
8 KOG4194 Membrane glycoprotein 99.1 7.2E-12 1.6E-16 117.1 -0.2 80 114-196 149-231 (873)
9 PLN03210 Resistant to P. syrin 99.1 2.9E-10 6.4E-15 121.6 8.8 211 113-331 633-881 (1153)
10 KOG4194 Membrane glycoprotein 99.0 2.7E-11 5.9E-16 113.3 -0.4 242 114-360 173-462 (873)
11 cd00116 LRR_RI Leucine-rich re 99.0 1E-10 2.2E-15 108.0 2.5 172 115-287 24-231 (319)
12 KOG4341 F-box protein containi 99.0 1.4E-11 3E-16 110.8 -4.6 211 139-349 138-412 (483)
13 PF12937 F-box-like: F-box-lik 98.9 1.2E-09 2.5E-14 69.6 3.3 35 12-46 1-35 (47)
14 cd00116 LRR_RI Leucine-rich re 98.9 7E-10 1.5E-14 102.4 2.4 197 115-311 52-291 (319)
15 PRK15387 E3 ubiquitin-protein 98.7 8.1E-08 1.8E-12 96.7 11.4 71 277-349 382-456 (788)
16 KOG1909 Ran GTPase-activating 98.5 2E-08 4.3E-13 88.9 1.0 239 82-348 29-308 (382)
17 KOG3207 Beta-tubulin folding c 98.5 1.3E-08 2.8E-13 92.6 -0.4 173 114-286 146-335 (505)
18 KOG0444 Cytoskeletal regulator 98.5 1.7E-09 3.7E-14 102.4 -6.2 98 251-349 196-302 (1255)
19 KOG1909 Ran GTPase-activating 98.5 2E-08 4.4E-13 88.9 0.1 212 137-357 28-289 (382)
20 PF00646 F-box: F-box domain; 98.4 5.6E-08 1.2E-12 62.2 0.9 37 12-48 3-39 (48)
21 PRK15370 E3 ubiquitin-protein 98.4 3.3E-07 7.2E-12 92.7 5.4 218 115-349 179-426 (754)
22 KOG0444 Cytoskeletal regulator 98.4 3.4E-09 7.5E-14 100.4 -8.7 59 114-174 126-186 (1255)
23 smart00256 FBOX A Receptor for 98.4 3.1E-07 6.7E-12 56.5 2.8 34 15-48 1-34 (41)
24 KOG1947 Leucine rich repeat pr 98.3 1E-07 2.3E-12 93.2 -0.3 212 113-331 187-439 (482)
25 PRK15387 E3 ubiquitin-protein 98.2 2.9E-06 6.3E-11 85.7 8.1 212 114-349 201-413 (788)
26 PF14580 LRR_9: Leucine-rich r 98.2 4.1E-07 8.9E-12 75.1 1.6 59 228-286 87-149 (175)
27 KOG0618 Serine/threonine phosp 98.1 2.8E-07 6.1E-12 91.4 -2.2 123 162-288 360-487 (1081)
28 PRK15370 E3 ubiquitin-protein 98.1 1.1E-05 2.3E-10 81.9 8.9 178 139-331 178-358 (754)
29 KOG3665 ZYG-1-like serine/thre 98.1 1.3E-06 2.7E-11 87.7 1.5 148 139-286 122-284 (699)
30 KOG0618 Serine/threonine phosp 98.0 2.2E-07 4.9E-12 92.0 -5.6 45 129-173 277-322 (1081)
31 KOG2982 Uncharacterized conser 98.0 2.3E-06 5E-11 74.5 1.0 175 114-290 71-262 (418)
32 PF14580 LRR_9: Leucine-rich r 97.9 3.1E-06 6.7E-11 70.0 1.3 36 251-286 87-122 (175)
33 KOG1947 Leucine rich repeat pr 97.9 8.1E-07 1.8E-11 86.9 -3.0 130 158-287 185-331 (482)
34 KOG4237 Extracellular matrix p 97.8 4.1E-06 8.8E-11 75.7 0.3 89 271-360 268-369 (498)
35 KOG3665 ZYG-1-like serine/thre 97.8 4.6E-06 1E-10 83.7 -0.1 140 186-327 122-283 (699)
36 KOG0617 Ras suppressor protein 97.6 8.6E-07 1.9E-11 71.0 -6.9 57 228-286 126-182 (264)
37 KOG1259 Nischarin, modulator o 97.5 3.9E-05 8.5E-10 67.1 1.9 204 138-348 181-409 (490)
38 KOG1859 Leucine-rich repeat pr 97.4 2.5E-05 5.3E-10 76.1 -0.4 201 79-286 51-288 (1096)
39 KOG4658 Apoptotic ATPase [Sign 97.4 0.0011 2.4E-08 68.8 10.5 124 138-262 522-652 (889)
40 KOG1259 Nischarin, modulator o 97.4 0.00026 5.5E-09 62.2 4.9 170 177-349 173-385 (490)
41 PRK15386 type III secretion pr 97.3 0.00098 2.1E-08 62.3 8.7 135 160-308 51-187 (426)
42 KOG4658 Apoptotic ATPase [Sign 97.3 5.4E-05 1.2E-09 78.2 -0.3 196 114-312 571-784 (889)
43 PRK15386 type III secretion pr 97.2 0.00032 6.9E-09 65.5 3.9 157 137-311 50-213 (426)
44 KOG2982 Uncharacterized conser 97.1 0.00038 8.3E-09 61.1 3.4 148 140-287 46-209 (418)
45 COG5238 RNA1 Ran GTPase-activa 97.1 0.00022 4.7E-09 61.7 1.8 103 227-329 155-282 (388)
46 KOG0617 Ras suppressor protein 97.1 1.2E-05 2.7E-10 64.5 -5.7 133 129-264 46-185 (264)
47 KOG2739 Leucine-rich acidic nu 96.8 0.00015 3.3E-09 62.3 -1.7 104 115-218 19-126 (260)
48 PF13855 LRR_8: Leucine rich r 96.8 0.00027 5.8E-09 47.5 -0.2 56 140-196 2-59 (61)
49 PF13855 LRR_8: Leucine rich r 96.7 0.00055 1.2E-08 46.0 0.8 38 249-287 22-59 (61)
50 COG4886 Leucine-rich repeat (L 96.7 0.0011 2.3E-08 63.2 2.9 165 138-308 115-287 (394)
51 KOG0472 Leucine-rich repeat pr 96.5 1.1E-05 2.5E-10 73.1 -11.1 173 129-310 104-287 (565)
52 PF07723 LRR_2: Leucine Rich R 96.5 0.0048 1E-07 33.3 3.2 25 162-186 1-26 (26)
53 KOG2123 Uncharacterized conser 96.4 0.00026 5.5E-09 61.5 -3.1 96 207-304 18-123 (388)
54 KOG2739 Leucine-rich acidic nu 96.4 0.00056 1.2E-08 59.0 -1.1 80 207-286 64-152 (260)
55 KOG0472 Leucine-rich repeat pr 96.3 0.0001 2.2E-09 67.1 -6.3 179 125-310 123-309 (565)
56 COG4886 Leucine-rich repeat (L 95.9 0.0052 1.1E-07 58.5 2.9 165 115-287 117-287 (394)
57 KOG1644 U2-associated snRNP A' 95.8 0.01 2.2E-07 49.4 3.8 14 227-240 138-151 (233)
58 KOG1644 U2-associated snRNP A' 95.6 0.027 5.8E-07 47.0 5.4 106 140-266 43-154 (233)
59 KOG0281 Beta-TrCP (transducin 95.6 0.0049 1.1E-07 55.0 1.2 37 8-44 71-111 (499)
60 PF12799 LRR_4: Leucine Rich r 95.6 0.0048 1E-07 38.2 0.7 32 140-171 2-34 (44)
61 KOG4237 Extracellular matrix p 95.6 0.0041 9E-08 56.8 0.6 57 115-173 68-128 (498)
62 KOG3864 Uncharacterized conser 95.5 0.0029 6.3E-08 52.6 -0.5 89 130-218 92-186 (221)
63 KOG2997 F-box protein FBX9 [Ge 95.4 0.0081 1.8E-07 53.1 1.7 38 7-44 102-144 (366)
64 PF12799 LRR_4: Leucine Rich r 95.2 0.012 2.6E-07 36.4 1.5 34 252-287 1-34 (44)
65 KOG2123 Uncharacterized conser 95.0 0.0023 5E-08 55.8 -2.6 77 137-214 39-123 (388)
66 KOG3864 Uncharacterized conser 94.9 0.011 2.3E-07 49.3 0.9 62 249-310 122-188 (221)
67 PLN03150 hypothetical protein; 94.7 0.038 8.3E-07 55.8 4.5 102 209-311 419-528 (623)
68 PLN03150 hypothetical protein; 94.0 0.036 7.9E-07 56.0 2.8 78 140-218 419-500 (623)
69 PLN03215 ascorbic acid mannose 93.5 0.053 1.1E-06 50.3 2.5 36 12-47 4-40 (373)
70 COG5238 RNA1 Ran GTPase-activa 92.3 0.26 5.7E-06 43.2 5.0 153 156-309 87-283 (388)
71 KOG1859 Leucine-rich repeat pr 90.9 0.005 1.1E-07 60.7 -7.6 119 141-264 166-291 (1096)
72 KOG0531 Protein phosphatase 1, 89.8 0.073 1.6E-06 51.1 -0.9 102 135-240 91-197 (414)
73 smart00367 LRR_CC Leucine-rich 89.6 0.2 4.3E-06 26.8 1.2 18 276-293 1-18 (26)
74 KOG0531 Protein phosphatase 1, 89.2 0.047 1E-06 52.3 -2.6 124 138-265 71-199 (414)
75 KOG0274 Cdc4 and related F-box 89.1 0.19 4.1E-06 49.6 1.4 40 6-45 102-141 (537)
76 PF13504 LRR_7: Leucine rich r 86.1 0.57 1.2E-05 22.2 1.4 10 278-287 2-11 (17)
77 PF08387 FBD: FBD; InterPro: 85.8 0.34 7.4E-06 30.9 0.7 27 320-346 15-50 (51)
78 PF13013 F-box-like_2: F-box-l 85.2 0.64 1.4E-05 35.0 2.1 30 11-40 21-50 (109)
79 KOG0532 Leucine-rich repeat (L 85.2 0.06 1.3E-06 51.9 -4.2 132 130-266 112-248 (722)
80 PF13516 LRR_6: Leucine Rich r 84.9 0.73 1.6E-05 24.0 1.6 22 251-272 1-22 (24)
81 PF13306 LRR_5: Leucine rich r 84.7 0.67 1.5E-05 35.9 2.2 12 183-194 9-20 (129)
82 KOG4579 Leucine-rich repeat (L 83.9 0.24 5.1E-06 38.9 -0.8 83 116-200 29-114 (177)
83 PF00560 LRR_1: Leucine Rich R 83.5 0.8 1.7E-05 23.3 1.4 9 279-287 2-10 (22)
84 PF13306 LRR_5: Leucine rich r 80.3 2 4.4E-05 33.1 3.4 8 208-215 12-19 (129)
85 smart00579 FBD domain in FBox 72.1 4 8.7E-05 28.0 2.6 32 319-350 5-45 (72)
86 KOG0532 Leucine-rich repeat (L 71.3 0.1 2.2E-06 50.5 -7.3 176 126-309 85-271 (722)
87 smart00368 LRR_RI Leucine rich 66.9 5.6 0.00012 21.6 2.0 22 252-273 2-23 (28)
88 KOG3926 F-box proteins [Amino 62.4 3.8 8.1E-05 35.9 1.0 47 9-55 199-252 (332)
89 PF09372 PRANC: PRANC domain; 61.0 6.7 0.00014 28.9 2.1 25 10-34 70-94 (97)
90 KOG1665 AFH1-interacting prote 58.3 16 0.00034 31.2 3.9 42 157-198 167-208 (302)
91 KOG3763 mRNA export factor TAP 48.5 8.9 0.00019 37.4 1.2 67 220-286 235-310 (585)
92 KOG4579 Leucine-rich repeat (L 46.8 2.2 4.9E-05 33.7 -2.5 34 251-286 76-109 (177)
93 KOG4308 LRR-containing protein 46.0 0.38 8.3E-06 46.8 -8.5 66 134-199 110-185 (478)
94 KOG3763 mRNA export factor TAP 41.3 8.7 0.00019 37.5 -0.0 37 160-196 217-254 (585)
95 smart00370 LRR Leucine-rich re 36.8 26 0.00055 18.3 1.4 13 252-264 2-14 (26)
96 smart00369 LRR_TYP Leucine-ric 36.8 26 0.00055 18.3 1.4 13 252-264 2-14 (26)
97 smart00365 LRR_SD22 Leucine-ri 25.7 54 0.0012 17.5 1.4 13 252-264 2-14 (26)
98 COG4829 CatC1 Muconolactone de 23.5 22 0.00047 25.2 -0.4 36 15-50 11-48 (98)
99 PF06881 Elongin_A: RNA polyme 23.3 96 0.0021 23.3 3.0 33 10-42 2-34 (109)
100 PRK09718 hypothetical protein; 20.4 1E+02 0.0023 29.9 3.2 10 209-218 166-175 (512)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-21 Score=167.05 Aligned_cols=275 Identities=20% Similarity=0.229 Sum_probs=176.2
Q ss_pred CCCCCHHHHHHHhccCChhHHHHHhhcccchhhhhcccce---eeecCcCCCCchhhHHHHHHHHHHhccccCCCCceEE
Q 015886 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPD---VEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKF 88 (398)
Q Consensus 12 i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw~~~~~---l~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~l 88 (398)
+..|||||+..||+.|+.+++.+.+.|||||.++-+.-+. +++...-.. .....+.+ .+.+..+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~-------p~~l~~l~------~rgV~v~ 164 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIH-------PDVLGRLL------SRGVIVF 164 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccC-------hhHHHHHH------hCCeEEE
Confidence 6789999999999999999999999999999876432211 222211111 12222222 1244444
Q ss_pred EEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceE
Q 015886 89 SLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKL 166 (398)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L 166 (398)
++- +... ....+.. ....+..+++.++++........+...+..|.+|+.|+|.|..+.++ .....-.+|+.|
T Consensus 165 Rla--r~~~--~~prlae-~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l 239 (419)
T KOG2120|consen 165 RLA--RSFM--DQPRLAE-HFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL 239 (419)
T ss_pred Ecc--hhhh--cCchhhh-hhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence 432 1110 0110111 11223447899999987666667777788899999999999988776 445566789999
Q ss_pred EEEEEEe-CHHHHHHHHhcCccccEEEeeecCCccee---ecCC-CCCCceEEEecC-CCcceeeecccCceEEEEeeee
Q 015886 167 ALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVN-LSNLKEIILVNT-SDIKRVEIKTSNVNALAIHQTY 240 (398)
Q Consensus 167 ~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~---~i~~-~~~L~~L~l~~~-~~l~~~~~~~p~L~~l~l~~~~ 240 (398)
+|+.+.- +..+++.++++|..|.+|++++|...... .+.+ -++|+.|++++| .++..-.+
T Consensus 240 nlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-------------- 305 (419)
T KOG2120|consen 240 NLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL-------------- 305 (419)
T ss_pred ccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH--------------
Confidence 9998876 88888888999999999999998765432 1111 267777777776 22211111
Q ss_pred ccceeEeecCCCCCceEEeeccC-CchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEecccccccee--
Q 015886 241 LFPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLIQ-- 313 (398)
Q Consensus 241 ~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~~~-- 313 (398)
......+|+|.+|+|+.+. +.+..+. .+..|+-|++|.++.|..+..-- ...|.|.+|++.+|-.-+.
T Consensus 306 ----~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~me 380 (419)
T KOG2120|consen 306 ----STLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTME 380 (419)
T ss_pred ----HHHHHhCCceeeeccccccccCchHHH-HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHH
Confidence 1123567777777777544 3443333 45678999999999996553221 2678999999999887632
Q ss_pred -ccccCCCcce
Q 015886 314 -VEIETPNLSI 323 (398)
Q Consensus 314 -~~~~~p~L~~ 323 (398)
+...+|+|+.
T Consensus 381 l~~e~~~~lki 391 (419)
T KOG2120|consen 381 LLKEMLSHLKI 391 (419)
T ss_pred HHHHhCccccc
Confidence 2355666553
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.72 E-value=1e-19 Score=162.32 Aligned_cols=300 Identities=19% Similarity=0.252 Sum_probs=173.2
Q ss_pred CCccCC-CCCHHHHHHHhccCChhHHHHHhhcccchhhh------hcccceeeecCcCCCCchhhHHHHHHHHHHhcccc
Q 015886 8 EVDGIS-TLPEPILHHILSFLPFKEVAQTCLLSKRWKQV------WQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQR 80 (398)
Q Consensus 8 ~~D~i~-~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 80 (398)
+.+.++ .||.|++.+|||+|+.+.+.|++++|+-|..+ |..+....|..+.. ...|...+ ++
T Consensus 67 ~~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~--------g~VV~~~~---~R 135 (483)
T KOG4341|consen 67 DNNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD--------GGVVENMI---SR 135 (483)
T ss_pred hcccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC--------CcceehHh---hh
Confidence 444554 69999999999999999999999999999864 44332222221111 11122222 11
Q ss_pred CCCCceEEEEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCC-ccccCCccccCCCCeeEEEEeccccCCC----C
Q 015886 81 KMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQP----S 155 (398)
Q Consensus 81 ~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~----~ 155 (398)
.+ ..+++|.+..+.. ....+-.....|+++++|.+.+|..... .
T Consensus 136 cg-------------------------------g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s 184 (483)
T KOG4341|consen 136 CG-------------------------------GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS 184 (483)
T ss_pred hc-------------------------------cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH
Confidence 12 2455555555322 2223333455677777777777653222 3
Q ss_pred ccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCcce----eecCCCCCCceEEEecC------------
Q 015886 156 ENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLES----LDLVNLSNLKEIILVNT------------ 218 (398)
Q Consensus 156 ~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~----~~i~~~~~L~~L~l~~~------------ 218 (398)
....|++|+.|+|..|.. ++..+..+..+||+|+.|++++|+.+.. ...+++..++.+...+|
T Consensus 185 la~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~ 264 (483)
T KOG4341|consen 185 LARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA 264 (483)
T ss_pred HHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh
Confidence 445677788887777555 7777777777888888888887766543 12233444555545555
Q ss_pred --------------CCcceee-----ecccCceEEEEeeeeccce---eEeecCCCCCceEEeeccC-CchHHHhhhhcC
Q 015886 219 --------------SDIKRVE-----IKTSNVNALAIHQTYLFPI---EVNVSSCGNLKCLKFDFLP-IEDEWLCNGISK 275 (398)
Q Consensus 219 --------------~~l~~~~-----~~~p~L~~l~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~ 275 (398)
..+.... -.+-.|+.+.++++...+. .....++++|+.|.++.+. +++..+..+-.+
T Consensus 265 ~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn 344 (483)
T KOG4341|consen 265 AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN 344 (483)
T ss_pred ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC
Confidence 1111111 1233444444444442111 1112456677777776554 556666666667
Q ss_pred CCCCcEEeccCcccc-----ccccccccccceEeccccccceec--------cccCCCcceEEEeccce------eeccc
Q 015886 276 LPLLEYLSMTKCHKL-----TSVRISSPCLKTLILECCDKLIQV--------EIETPNLSIFKYHGDLI------SFSSN 336 (398)
Q Consensus 276 ~~~L~~L~l~~c~~~-----~~~~~~~~~L~~L~l~~c~~~~~~--------~~~~p~L~~l~~~~~~~------~~~~~ 336 (398)
++.|+.|++..|... .+...+++.|+.|.++.|..++.- ......|+.+++.+++. ..+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 777777777776332 233446777788877777776321 12334567777777665 55666
Q ss_pred cccccceeeeecc
Q 015886 337 ALSLSETSLCFSS 349 (398)
Q Consensus 337 ~~~L~~l~i~~~~ 349 (398)
+++||++.++.+.
T Consensus 425 c~~Leri~l~~~q 437 (483)
T KOG4341|consen 425 CRNLERIELIDCQ 437 (483)
T ss_pred Ccccceeeeechh
Confidence 7788887775553
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.39 E-value=9.2e-13 Score=139.63 Aligned_cols=233 Identities=15% Similarity=0.157 Sum_probs=113.5
Q ss_pred CCCeEEEEEecCCccccCCcccc-CCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886 114 SEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 192 (398)
++++.|+++.+.. ...+|..++ .+++|++|+++++.+........+++|++|+|+++.++.. +...+..+++|+.|+
T Consensus 93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEEE
Confidence 5777777765321 234666555 6777777777777664333334567777777777665322 122245667777777
Q ss_pred eeecCCccee--ecCCCCCCceEEEecCCCcceee---ecccCceEEEEeeeec-cceeEeecCCCCCceEEeeccCCch
Q 015886 193 IRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLPIED 266 (398)
Q Consensus 193 l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~---~~~p~L~~l~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (398)
+++|.....+ .+..+++|+.|++.+|.....++ ...++|+.|+++++.. ......++.+++|++|+++++.+..
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence 7666432211 23344566666665552111111 1344555555554431 1112223444555555554444332
Q ss_pred HHHhhhhcC------------------------CCCCcEEeccCcccccccc---ccccccceEeccccccce---eccc
Q 015886 267 EWLCNGISK------------------------LPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI---QVEI 316 (398)
Q Consensus 267 ~~~~~~~~~------------------------~~~L~~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~~~---~~~~ 316 (398)
. +...+.. +++|+.|++++|.....++ ...++|+.|++++|.... ....
T Consensus 251 ~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 251 P-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred c-cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 1 1112333 4455555555442221221 134455555555554321 1223
Q ss_pred cCCCcceEEEeccce-----eeccccccccceeeeecc
Q 015886 317 ETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS 349 (398)
Q Consensus 317 ~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~ 349 (398)
.+|+|+.|.+.++.. ..+...++|+.++++.+.
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 455566666655543 334445566666665443
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.37 E-value=2.7e-12 Score=136.94 Aligned_cols=93 Identities=24% Similarity=0.245 Sum_probs=54.8
Q ss_pred CCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc--cccccceEeccccccceeccccCCCcceEEEecc
Q 015886 252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGD 329 (398)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~--~~~~L~~L~l~~c~~~~~~~~~~p~L~~l~~~~~ 329 (398)
++|+.|+++++..... +...+.++++|+.|++++|..++.++. .+++|++|++++|..+..+....++|+.|.+.+.
T Consensus 778 ~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred ccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCC
Confidence 3555666655432222 222356778888888888877777665 4678888888888776544433445555555554
Q ss_pred ce----eeccccccccceee
Q 015886 330 LI----SFSSNALSLSETSL 345 (398)
Q Consensus 330 ~~----~~~~~~~~L~~l~i 345 (398)
.+ ..+.+.++|+.+.+
T Consensus 857 ~i~~iP~si~~l~~L~~L~L 876 (1153)
T PLN03210 857 GIEEVPWWIEKFSNLSFLDM 876 (1153)
T ss_pred CCccChHHHhcCCCCCEEEC
Confidence 43 23334444444444
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.25 E-value=1.5e-11 Score=130.49 Aligned_cols=232 Identities=16% Similarity=0.123 Sum_probs=167.6
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--C-ccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--S-ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 190 (398)
.+++.|++..... ...++..+..+++|+.|+|+++.+... . ....+++|++|+|+++.+....- ....++|+.
T Consensus 69 ~~v~~L~L~~~~i-~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNI-SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCc-cccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC---ccccCCCCE
Confidence 3788888876332 224566677889999999999987532 2 23488999999999998742211 135799999
Q ss_pred EEeeecCCccee--ecCCCCCCceEEEecCCCcceee---ecccCceEEEEeeeec-cceeEeecCCCCCceEEeeccCC
Q 015886 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLPI 264 (398)
Q Consensus 191 L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~---~~~p~L~~l~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~ 264 (398)
|++++|.....+ .+..+++|+.|++.+|.....++ ...++|++|+++++.. ......++.+++|+.|+++++.+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 999998654322 35668999999999983222222 3678999999998872 22334678899999999998887
Q ss_pred chHHHhhhhcCCCCCcEEeccCccccccccc---cccccceEecccccccee---ccccCCCcceEEEeccce-----ee
Q 015886 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQ---VEIETPNLSIFKYHGDLI-----SF 333 (398)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~~---~~~~~p~L~~l~~~~~~~-----~~ 333 (398)
.... ...+..+++|++|++++|.....++. .+++|++|++++|..... .....++|+.|.++++.. ..
T Consensus 225 ~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 225 SGEI-PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred CCcC-ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence 6533 23357789999999999754333333 567899999999876432 234567899999988765 45
Q ss_pred ccccccccceeeeeccc
Q 015886 334 SSNALSLSETSLCFSSH 350 (398)
Q Consensus 334 ~~~~~~L~~l~i~~~~~ 350 (398)
+.+.++|+.+.+..+..
T Consensus 304 ~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 304 VIQLQNLEILHLFSNNF 320 (968)
T ss_pred HcCCCCCcEEECCCCcc
Confidence 67789999999976643
No 6
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.1e-12 Score=118.45 Aligned_cols=191 Identities=16% Similarity=0.157 Sum_probs=137.4
Q ss_pred CCCCeeEEEEeccccCCC---CccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCcc---eeecCCCCC
Q 015886 137 YVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLE---SLDLVNLSN 209 (398)
Q Consensus 137 ~~~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~---~~~i~~~~~ 209 (398)
+.++|++..|.++.+... .....||+++.|+|+++-+ .-..+..++.-+|+||.|+++.+.... +.....+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 457788888988887655 3677899999999999988 777888899999999999999875432 222224689
Q ss_pred CceEEEecC----CCcceeeecccCceEEEEeeee-ccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEec
Q 015886 210 LKEIILVNT----SDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM 284 (398)
Q Consensus 210 L~~L~l~~~----~~l~~~~~~~p~L~~l~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 284 (398)
||.|.++.| .....+...+|+|+.|++.++. ..........+..|+.|+|+++.+.+.........+|.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 999999999 3344555689999999999885 11112233456789999999988777554555778999999999
Q ss_pred cCccccccc----------cccccccceEecccccc--ceec--cccCCCcceEEEec
Q 015886 285 TKCHKLTSV----------RISSPCLKTLILECCDK--LIQV--EIETPNLSIFKYHG 328 (398)
Q Consensus 285 ~~c~~~~~~----------~~~~~~L~~L~l~~c~~--~~~~--~~~~p~L~~l~~~~ 328 (398)
+.| .+.++ ...+|+|++|++..... ...+ ....++|+.+.+.+
T Consensus 279 s~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 279 SST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 996 22221 22678888888887665 2222 13344555555444
No 7
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.3e-12 Score=109.36 Aligned_cols=219 Identities=19% Similarity=0.188 Sum_probs=122.3
Q ss_pred HHHhCCCeEEEEEecCCccccCCccccCC-CCeeEEEEeccccCCC---CccccCcccceEEEEEEEeCHHHHHHHHhcC
Q 015886 110 LAIESEVKELVLVHWRSERRNLPEIIFYV-ESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGC 185 (398)
Q Consensus 110 ~~~~~~l~~L~l~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~c 185 (398)
....+++..+.+.........+.+..... ..|++|+|++..+... .....|.+|+.|+|.++..+|..... ++.-
T Consensus 155 ~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN 233 (419)
T KOG2120|consen 155 RLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKN 233 (419)
T ss_pred HHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhcc
Confidence 34556887777664221112222221111 3456666665444322 23344555555555555554444333 3333
Q ss_pred ccccEEEeeecCCcceee----cCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeec-CCCCCceEEee
Q 015886 186 PLIEYLEIRSCEGLESLD----LVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVS-SCGNLKCLKFD 260 (398)
Q Consensus 186 p~Le~L~l~~~~~~~~~~----i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~ 260 (398)
.+|+.|+++.|.++.... +++|++|..|+++.|....+.. .+.+. --++|+.|+|+
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V-------------------tv~V~hise~l~~LNls 294 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKV-------------------TVAVAHISETLTQLNLS 294 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhh-------------------hHHHhhhchhhhhhhhh
Confidence 555555555555553322 2334555555555552221111 11111 12456666666
Q ss_pred ccC--CchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccce-e-c--cccCCCcceEEEeccc
Q 015886 261 FLP--IEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLI-Q-V--EIETPNLSIFKYHGDL 330 (398)
Q Consensus 261 ~~~--~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~~-~-~--~~~~p~L~~l~~~~~~ 330 (398)
|+. +....+..+...||+|.+|+++.|..++.-. ..++.|++|+++.|..+. + + ....|.|.+|++.|+-
T Consensus 295 G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 295 GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 543 3344567777899999999999997766532 278999999999999983 2 2 3778999999999975
Q ss_pred e-----eeccccccccceeeeec
Q 015886 331 I-----SFSSNALSLSETSLCFS 348 (398)
Q Consensus 331 ~-----~~~~~~~~L~~l~i~~~ 348 (398)
. ...+.+++|+--.-+++
T Consensus 375 sdt~mel~~e~~~~lkin~q~~~ 397 (419)
T KOG2120|consen 375 SDTTMELLKEMLSHLKINCQHFN 397 (419)
T ss_pred CchHHHHHHHhCccccccceeee
Confidence 5 44455666664444443
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.13 E-value=7.2e-12 Score=117.12 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=44.2
Q ss_pred CCCeEEEEEecCCccccCCcccc-CCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886 114 SEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 190 (398)
+-++.|+++.... .++|..-+ .-.++++|+|.++++... ..+..+.+|..|.|+.++++.-. ...+.+.|.|+.
T Consensus 149 ~alrslDLSrN~i--s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp-~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 149 PALRSLDLSRNLI--SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP-QRSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhhhchh--hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC-HHHhhhcchhhh
Confidence 4566777665322 23332222 235677777777766543 45555667777777776663221 122445667777
Q ss_pred EEeeec
Q 015886 191 LEIRSC 196 (398)
Q Consensus 191 L~l~~~ 196 (398)
|+|..+
T Consensus 226 LdLnrN 231 (873)
T KOG4194|consen 226 LDLNRN 231 (873)
T ss_pred hhcccc
Confidence 666654
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.07 E-value=2.9e-10 Score=121.57 Aligned_cols=211 Identities=19% Similarity=0.208 Sum_probs=119.5
Q ss_pred hCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCC--CCccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (398)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 190 (398)
.++++.++++.+. ....+| .+..+++|+.|++.+|.... +.....+++|+.|++++|..-. .+... ..+++|+.
T Consensus 633 l~~Lk~L~Ls~~~-~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-~Lp~~-i~l~sL~~ 708 (1153)
T PLN03210 633 LTGLRNIDLRGSK-NLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE-ILPTG-INLKSLYR 708 (1153)
T ss_pred CCCCCEEECCCCC-CcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-ccCCc-CCCCCCCE
Confidence 3578888887632 223444 35567888888888875322 2445677888888888764310 11110 14677888
Q ss_pred EEeeecCCcceeecCCCCCCceEEEecCCCcceee---------------------------------ecccCceEEEEe
Q 015886 191 LEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE---------------------------------IKTSNVNALAIH 237 (398)
Q Consensus 191 L~l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~---------------------------------~~~p~L~~l~l~ 237 (398)
|++.+|..+..+.-. .++|+.|.+.++. +..++ ...++|++|+++
T Consensus 709 L~Lsgc~~L~~~p~~-~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 709 LNLSGCSRLKSFPDI-STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred EeCCCCCCccccccc-cCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 888877655433211 1344555444431 11111 123577777777
Q ss_pred eee-ccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccccccccceEeccccccc--eec
Q 015886 238 QTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKL--IQV 314 (398)
Q Consensus 238 ~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~~--~~~ 314 (398)
++. .......++++++|+.|++.+|..... +.... .+++|+.|++++|..+..++...++|+.|+++++... ..-
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~-LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~s 864 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLET-LPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWW 864 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcCe-eCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHH
Confidence 765 222334567889999999987643221 11111 5788999999998777766655556666666554321 111
Q ss_pred cccCCCcceEEEeccce
Q 015886 315 EIETPNLSIFKYHGDLI 331 (398)
Q Consensus 315 ~~~~p~L~~l~~~~~~~ 331 (398)
...+++|+.|.+.++..
T Consensus 865 i~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred HhcCCCCCEEECCCCCC
Confidence 23445566666555433
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.04 E-value=2.7e-11 Score=113.30 Aligned_cols=242 Identities=17% Similarity=0.174 Sum_probs=129.0
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeC-HHHHHHHHhcCccccE
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCAD-DQAIASLISGCPLIEY 190 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~ 190 (398)
.++++|.+........+... +.+..+|..|+|+.+++... ..+.++|.|+.|+|..+.+. -+.+. +.+.|.|+.
T Consensus 173 ~ni~~L~La~N~It~l~~~~-F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt--FqgL~Sl~n 249 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGH-FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT--FQGLPSLQN 249 (873)
T ss_pred CCceEEeecccccccccccc-ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh--hcCchhhhh
Confidence 37899998875444333332 33456889999999887544 55667899999999888772 22322 456777777
Q ss_pred EEeeecCCc--ceeecCCCCCCceEEEecC-----------------------CCcceeee----cccCceEEEEeeeec
Q 015886 191 LEIRSCEGL--ESLDLVNLSNLKEIILVNT-----------------------SDIKRVEI----KTSNVNALAIHQTYL 241 (398)
Q Consensus 191 L~l~~~~~~--~~~~i~~~~~L~~L~l~~~-----------------------~~l~~~~~----~~p~L~~l~l~~~~~ 241 (398)
|.+..+... +.=.+..+.++++|++..+ ..+..+.+ .++.|+.|+++.+..
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 777665322 1101112344444444443 02333332 344555555544431
Q ss_pred cc-eeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccc---ccc---ccccccccceEeccccccc---
Q 015886 242 FP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK---LTS---VRISSPCLKTLILECCDKL--- 311 (398)
Q Consensus 242 ~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~---~~~---~~~~~~~L~~L~l~~c~~~--- 311 (398)
.. ..-.+..+..|+.|.|+.+.++.- -...+..+.+|+.|+|++... +++ ....++.|++|.+.+...-
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l-~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHL-AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHH-HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 11 111233344555555554443321 122234556777777766311 111 1124667777777665542
Q ss_pred eeccccCCCcceEEEeccce-----eeccccccccceeeeeccc-chhhHHHHHH
Q 015886 312 IQVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSH-LMVNIEWVVE 360 (398)
Q Consensus 312 ~~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~~-~~~~~~~~~~ 360 (398)
+......++|+.|++.+..+ ..++.. +|+++.+++.+. -.+..+|+..
T Consensus 409 krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred hhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHH
Confidence 23445667777777766665 444444 777777755542 2345566543
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=1e-10 Score=108.00 Aligned_cols=172 Identities=18% Similarity=0.169 Sum_probs=94.0
Q ss_pred CCeEEEEEecCCcc---ccCCccccCCCCeeEEEEeccccCC--C------CccccCcccceEEEEEEEeCH---HHHHH
Q 015886 115 EVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQ--P------SENVKLFSLRKLALREVCADD---QAIAS 180 (398)
Q Consensus 115 ~l~~L~l~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~l~~--~------~~~~~~~~L~~L~L~~~~~~~---~~l~~ 180 (398)
+++++.+..+.... ..++..+...++|++|.+.++.+.. . .....+++|+.|+++++.+.. ..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 58888888754322 2345555566778888888776541 1 123346688888888777742 23333
Q ss_pred HHhcCccccEEEeeecCCcc----ee--ecCCC-CCCceEEEecCCCc----ceee---ecccCceEEEEeeeeccc---
Q 015886 181 LISGCPLIEYLEIRSCEGLE----SL--DLVNL-SNLKEIILVNTSDI----KRVE---IKTSNVNALAIHQTYLFP--- 243 (398)
Q Consensus 181 l~~~cp~Le~L~l~~~~~~~----~~--~i~~~-~~L~~L~l~~~~~l----~~~~---~~~p~L~~l~l~~~~~~~--- 243 (398)
+... ++|++|++.+|.... .+ .+..+ ++|+.|.+.+|.-. ..+. ..+++|++|+++++....
T Consensus 104 l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 3444 668888887775431 00 12234 67777777777211 1111 133456666666654110
Q ss_pred --eeEeecCCCCCceEEeeccCCchHH---HhhhhcCCCCCcEEeccCc
Q 015886 244 --IEVNVSSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 244 --~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c 287 (398)
....+..+++|++|+++++.+.+.. +...+..+++|+.|++++|
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 0011233456666666666655432 2333455666666666665
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.98 E-value=1.4e-11 Score=110.85 Aligned_cols=211 Identities=20% Similarity=0.262 Sum_probs=143.1
Q ss_pred CCeeEEEEeccccCCC----CccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCcceeec----CCCCC
Q 015886 139 ESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDL----VNLSN 209 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~----~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i----~~~~~ 209 (398)
.-|+.|.+.||+-... .....||+++.|.+.+|.. +|..+.++...|+.|+.|++..|..++...+ .+|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 5699999999854322 4567899999999999988 9999999999999999999999988865433 35899
Q ss_pred CceEEEecCC-----CcceeeecccCceEEEEeeeeccceeEe---ecC--------------------------CCCCc
Q 015886 210 LKEIILVNTS-----DIKRVEIKTSNVNALAIHQTYLFPIEVN---VSS--------------------------CGNLK 255 (398)
Q Consensus 210 L~~L~l~~~~-----~l~~~~~~~p~L~~l~l~~~~~~~~~~~---~~~--------------------------~~~L~ 255 (398)
|++|+++.|+ +++.+.-.+.+++.+...||........ -.. +..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 9999999993 4444555777788887777762211000 011 33444
Q ss_pred eEEeecc-CCchHHHhhhhcCCCCCcEEeccCcccccc-----ccccccccceEeccccccc-----eeccccCCCcceE
Q 015886 256 CLKFDFL-PIEDEWLCNGISKLPLLEYLSMTKCHKLTS-----VRISSPCLKTLILECCDKL-----IQVEIETPNLSIF 324 (398)
Q Consensus 256 ~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~-----~~~~~~~L~~L~l~~c~~~-----~~~~~~~p~L~~l 324 (398)
.|..+++ .+++..+..+..++++|+.|.+..|..+++ +..+++.|+.+++..|... .++...+|.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 4444433 355566667777778888888888765443 3346777888887777765 2455777778877
Q ss_pred EEeccce----------eeccccccccceeeeecc
Q 015886 325 KYHGDLI----------SFSSNALSLSETSLCFSS 349 (398)
Q Consensus 325 ~~~~~~~----------~~~~~~~~L~~l~i~~~~ 349 (398)
.++.+.. ........|+.+.+..+.
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 7764433 122234455555555443
No 13
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.90 E-value=1.2e-09 Score=69.64 Aligned_cols=35 Identities=34% Similarity=0.746 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHhccCChhHHHHHhhcccchhhhh
Q 015886 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW 46 (398)
Q Consensus 12 i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw 46 (398)
|..||+||+.+||+||+.+|+++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999764
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.88 E-value=7e-10 Score=102.43 Aligned_cols=197 Identities=20% Similarity=0.104 Sum_probs=115.3
Q ss_pred CCeEEEEEecCCc-----cccCCccccCCCCeeEEEEeccccCCC--CccccC---cccceEEEEEEEeCHHHHHH---H
Q 015886 115 EVKELVLVHWRSE-----RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKL---FSLRKLALREVCADDQAIAS---L 181 (398)
Q Consensus 115 ~l~~L~l~~~~~~-----~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~---~~L~~L~L~~~~~~~~~l~~---l 181 (398)
+++++.++..... ...++..+..+++|++|+++++.+... .....+ ++|+.|+++++.+++..... .
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 4666666552211 011223344467788888877766422 112222 44888888887775544433 2
Q ss_pred HhcC-ccccEEEeeecCCcc----ee--ecCCCCCCceEEEecCCCc----ceeee---cccCceEEEEeeeeccc----
Q 015886 182 ISGC-PLIEYLEIRSCEGLE----SL--DLVNLSNLKEIILVNTSDI----KRVEI---KTSNVNALAIHQTYLFP---- 243 (398)
Q Consensus 182 ~~~c-p~Le~L~l~~~~~~~----~~--~i~~~~~L~~L~l~~~~~l----~~~~~---~~p~L~~l~l~~~~~~~---- 243 (398)
+..+ ++|++|++.+|.... .+ .+..+++|+.|++.+|.-- ..+.. ..++|++|+++++....
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 3445 778888888775431 11 1223467888888777211 11211 33588888888776211
Q ss_pred -eeEeecCCCCCceEEeeccCCchHHHhhhhcC----CCCCcEEeccCcccc----ccc---cccccccceEeccccccc
Q 015886 244 -IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISK----LPLLEYLSMTKCHKL----TSV---RISSPCLKTLILECCDKL 311 (398)
Q Consensus 244 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~c~~~----~~~---~~~~~~L~~L~l~~c~~~ 311 (398)
....+..+++|++|+++++.+.+..+..+... .+.|++|++.+|... ..+ ....+.|++++++++...
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 11234677889999999888887555555444 378999999987421 111 113467888888887764
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.73 E-value=8.1e-08 Score=96.70 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=41.2
Q ss_pred CCCcEEeccCccccccccccccccceEeccccccceeccccCCCcceEEEeccce----eeccccccccceeeeecc
Q 015886 277 PLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSS 349 (398)
Q Consensus 277 ~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~p~L~~l~~~~~~~----~~~~~~~~L~~l~i~~~~ 349 (398)
++|+.|+++++ .++.++..+++|+.|+++++.. ..+.....+|+.|.+.+++. ..+.++++|+.++++.+.
T Consensus 382 ~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~L-ssIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLPVLPSELKELMVSGNRL-TSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cccceEEecCC-cccCCCCcccCCCEEEccCCcC-CCCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 35666666664 3444554555677777766653 23333333566666666555 334567778888886664
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.54 E-value=2e-08 Score=88.93 Aligned_cols=239 Identities=21% Similarity=0.236 Sum_probs=119.6
Q ss_pred CCCceEEEEEeecCCCCCChhhHHHHHHHHHhC--CCeEEEEEe--cCCccccCCccccCCCCeeEEEEeccccCCCCcc
Q 015886 82 MISIKKFSLELDLINSPENASLAGRCLGLAIES--EVKELVLVH--WRSERRNLPEIIFYVESLHVLELSYCKLQQPSEN 157 (398)
Q Consensus 82 ~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~--~l~~L~l~~--~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~ 157 (398)
...+.+++++-. +......+|+....+. .+++.+++. ......++|..+ +.| . ...
T Consensus 29 ~~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L------~~l-------~--~aL 88 (382)
T KOG1909|consen 29 MDSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEAL------KML-------S--KAL 88 (382)
T ss_pred cCceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHH------HHH-------H--HHH
Confidence 346666665543 4456667777766553 555555543 111122233221 000 0 344
Q ss_pred ccCcccceEEEEEEEe---CHHHHHHHHhcCccccEEEeeecCCcce--eecCCCCCCceEEEecCCCcceeeecccCce
Q 015886 158 VKLFSLRKLALREVCA---DDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEIKTSNVN 232 (398)
Q Consensus 158 ~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~ 232 (398)
..+|.|++|+|+.|.+ ....+..++++|..|++|.+.+|..-.. -.+. ..|..|... ...-..|.|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~~~------kk~~~~~~Lr 160 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELAVN------KKAASKPKLR 160 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHHHH------hccCCCcceE
Confidence 5677888888888888 3456778899999999999998843210 0000 011111100 1111234455
Q ss_pred EEEEeeeecc--c---eeEeecCCCCCceEEeeccCCchH---HHhhhhcCCCCCcEEeccCccc-------cccccccc
Q 015886 233 ALAIHQTYLF--P---IEVNVSSCGNLKCLKFDFLPIEDE---WLCNGISKLPLLEYLSMTKCHK-------LTSVRISS 297 (398)
Q Consensus 233 ~l~l~~~~~~--~---~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~c~~-------~~~~~~~~ 297 (398)
.+.+..+... + ....+...|.|+.+.++.+.+... .+..-+.+||+|+.|+|....- +......+
T Consensus 161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence 5554444311 0 011234445666666655554332 2233345566666666655310 11111134
Q ss_pred cccceEeccccccc--------eeccccCCCcceEEEeccce---------eeccccccccceeeeec
Q 015886 298 PCLKTLILECCDKL--------IQVEIETPNLSIFKYHGDLI---------SFSSNALSLSETSLCFS 348 (398)
Q Consensus 298 ~~L~~L~l~~c~~~--------~~~~~~~p~L~~l~~~~~~~---------~~~~~~~~L~~l~i~~~ 348 (398)
|+|+.|++.+|-.- ..+....|+|+.+.+.|+.+ .++..-+.|++|.++.+
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 45666666666543 12234466666666666655 34444667777777555
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.3e-08 Score=92.60 Aligned_cols=173 Identities=21% Similarity=0.154 Sum_probs=105.6
Q ss_pred CCCeEEEEEec-CCccccCCccccCCCCeeEEEEeccccCCC---CccccCcccceEEEEEEEeCHHHHHHHHhcCcccc
Q 015886 114 SEVKELVLVHW-RSERRNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (398)
Q Consensus 114 ~~l~~L~l~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 189 (398)
++++.|+++.. -.....+-..+..+++|+.|+++.+.+..+ ..-..++.||.|.|++|.++..++..++..||.|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 47777777652 112223333445578888888888877655 23346789999999999998888989899999999
Q ss_pred EEEeeecCCcc--eeecCCCCCCceEEEecCCCc--c--eeeecccCceEEEEeeeeccce-------eEeecCCCCCce
Q 015886 190 YLEIRSCEGLE--SLDLVNLSNLKEIILVNTSDI--K--RVEIKTSNVNALAIHQTYLFPI-------EVNVSSCGNLKC 256 (398)
Q Consensus 190 ~L~l~~~~~~~--~~~i~~~~~L~~L~l~~~~~l--~--~~~~~~p~L~~l~l~~~~~~~~-------~~~~~~~~~L~~ 256 (398)
.|.+..+.... .....-+.+|+.|+++++..+ . ......|.|+.|.++.+..... .-....+|+|+.
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~ 305 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY 305 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence 99998885332 112222467888888877221 1 1122566777776665541110 011245677777
Q ss_pred EEeeccCCchHHHhhhhcCCCCCcEEeccC
Q 015886 257 LKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (398)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (398)
|.+..+.+.+-....-+..+++|+.|.+..
T Consensus 306 L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 306 LNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred eecccCccccccccchhhccchhhhhhccc
Confidence 777766653321222244456666666544
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.54 E-value=1.7e-09 Score=102.39 Aligned_cols=98 Identities=14% Similarity=0.062 Sum_probs=43.2
Q ss_pred CCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccce--eccccCCCcceEE
Q 015886 251 CGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI--QVEIETPNLSIFK 325 (398)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~--~~~~~~p~L~~l~ 325 (398)
+..|+.|++++.+-+-..+..-+..+.||..++++. .++..++. ..++|+.|++++...-+ .....-.+|++|.
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLN 274 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLN 274 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhc
Confidence 334444444444433333333333344555555544 23333333 34556666666544321 1111122455555
Q ss_pred Eeccce----eeccccccccceeeeecc
Q 015886 326 YHGDLI----SFSSNALSLSETSLCFSS 349 (398)
Q Consensus 326 ~~~~~~----~~~~~~~~L~~l~i~~~~ 349 (398)
++.++. ..+-..+.|+++....+.
T Consensus 275 lSrNQLt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 275 LSRNQLTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred cccchhccchHHHhhhHHHHHHHhccCc
Confidence 555444 344445566666664443
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.51 E-value=2e-08 Score=88.86 Aligned_cols=212 Identities=18% Similarity=0.182 Sum_probs=126.3
Q ss_pred CCCCeeEEEEeccccCCC------CccccCcccceEEEEEEEe---CHH------HHHHHHhcCccccEEEeeecCCc-c
Q 015886 137 YVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCA---DDQ------AIASLISGCPLIEYLEIRSCEGL-E 200 (398)
Q Consensus 137 ~~~~L~~L~L~~~~l~~~------~~~~~~~~L~~L~L~~~~~---~~~------~l~~l~~~cp~Le~L~l~~~~~~-~ 200 (398)
...++++++|+|+.+... ....+-++|+.-+++..-- -++ .+..-+..||.|+.|+|+++..- .
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 346677777777766443 2233344666666654422 111 23334567888888888877432 1
Q ss_pred ee-----ecCCCCCCceEEEecCCCcceeeec--ccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCch---HHHh
Q 015886 201 SL-----DLVNLSNLKEIILVNTSDIKRVEIK--TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED---EWLC 270 (398)
Q Consensus 201 ~~-----~i~~~~~L~~L~l~~~~~l~~~~~~--~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~ 270 (398)
.+ -++++..|++|.+.+| ++.+..-. ..-|..+. .....++-++|+.+..+.|...+ ..+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELA--------VNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHH--------HHhccCCCcceEEEEeeccccccccHHHHH
Confidence 11 1334567777777777 22222110 00111111 11234677899999999888766 3455
Q ss_pred hhhcCCCCCcEEeccCcc-ccccc---c---ccccccceEeccccccce-------eccccCCCcceEEEeccce-----
Q 015886 271 NGISKLPLLEYLSMTKCH-KLTSV---R---ISSPCLKTLILECCDKLI-------QVEIETPNLSIFKYHGDLI----- 331 (398)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~-~~~~~---~---~~~~~L~~L~l~~c~~~~-------~~~~~~p~L~~l~~~~~~~----- 331 (398)
..++..|.|+.+.+.... ..+.+ . ..+|+|+.|+|.....-. ......|+|+.+.+.+|..
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence 566778999999998841 11111 1 168999999999877641 2335566788888888766
Q ss_pred -----eeccccccccceeeeecccchhhHHH
Q 015886 332 -----SFSSNALSLSETSLCFSSHLMVNIEW 357 (398)
Q Consensus 332 -----~~~~~~~~L~~l~i~~~~~~~~~~~~ 357 (398)
.+-..++.|+.+.+-.+.+...+...
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~ 289 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNEITRDAALA 289 (382)
T ss_pred HHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence 44455889999999777655444333
No 20
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.45 E-value=5.6e-08 Score=62.24 Aligned_cols=37 Identities=41% Similarity=0.762 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHhccCChhHHHHHhhcccchhhhhcc
Q 015886 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT 48 (398)
Q Consensus 12 i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw~~ 48 (398)
++.||+|++.+||++|+..|+++++.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5689999999999999999999999999999987654
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.39 E-value=3.3e-07 Score=92.70 Aligned_cols=218 Identities=16% Similarity=0.123 Sum_probs=99.3
Q ss_pred CCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEee
Q 015886 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (398)
Q Consensus 115 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~ 194 (398)
+..+|.++.. ....+|..+ .++|+.|+++++.+...+. ..+++|+.|++++|.++. +..- -.+.|+.|+++
T Consensus 179 ~~~~L~L~~~--~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N~Lts--LP~~--l~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKIL--GLTTIPACI--PEQITTLILDNNELKSLPE-NLQGNIKTLYANSNQLTS--IPAT--LPDTIQEMELS 249 (754)
T ss_pred CceEEEeCCC--CcCcCCccc--ccCCcEEEecCCCCCcCCh-hhccCCCEEECCCCcccc--CChh--hhccccEEECc
Confidence 5666666542 233455433 2457777777776653321 123467777776665521 1110 11356666666
Q ss_pred ecCCcceeecCCCCCCceEEEecCCCcceeee-cccCceEEEEeeeeccceeEe-----------------e--cCCCCC
Q 015886 195 SCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIEVN-----------------V--SSCGNL 254 (398)
Q Consensus 195 ~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~l~l~~~~~~~~~~~-----------------~--~~~~~L 254 (398)
+|... .+...-.++|+.|+++++ .+..++. ..++|+.|+++++.-...... + ...++|
T Consensus 250 ~N~L~-~LP~~l~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL 327 (754)
T PRK15370 250 INRIT-ELPERLPSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGL 327 (754)
T ss_pred CCccC-cCChhHhCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccc
Confidence 55321 111111134555555433 2222221 112445554444431100000 0 112456
Q ss_pred ceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc-cccccceEeccccccceeccccC-CCcceEEEeccce-
Q 015886 255 KCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVEIET-PNLSIFKYHGDLI- 331 (398)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-~~~~L~~L~l~~c~~~~~~~~~~-p~L~~l~~~~~~~- 331 (398)
+.|+++++.+.. +... -.++|+.|++++| .++.++. .++.|++|+|++|... .+.... ++|+.|.+.+++.
T Consensus 328 ~~L~Ls~N~Lt~--LP~~--l~~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N~L~ 401 (754)
T PRK15370 328 KTLEAGENALTS--LPAS--LPPELQVLDVSKN-QITVLPETLPPTITTLDVSRNALT-NLPENLPAALQIMQASRNNLV 401 (754)
T ss_pred eeccccCCcccc--CChh--hcCcccEEECCCC-CCCcCChhhcCCcCEEECCCCcCC-CCCHhHHHHHHHHhhccCCcc
Confidence 666666655432 1111 1257777777775 3333433 2356777777776532 222111 2466666665554
Q ss_pred -------eeccccccccceeeeecc
Q 015886 332 -------SFSSNALSLSETSLCFSS 349 (398)
Q Consensus 332 -------~~~~~~~~L~~l~i~~~~ 349 (398)
.+....+.+..+.+..+.
T Consensus 402 ~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 402 RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCchhHHHHhhcCCCccEEEeeCCC
Confidence 122334566667665543
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.37 E-value=3.4e-09 Score=100.37 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=33.8
Q ss_pred CCCeEEEEEecCCccccCCcccc-CCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeC
Q 015886 114 SEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCAD 174 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~ 174 (398)
++.-.|.++.. ....+|..++ ++..|-.|+|+++++... +-...+..|++|.|+++...
T Consensus 126 Kn~iVLNLS~N--~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 126 KNSIVLNLSYN--NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred cCcEEEEcccC--ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh
Confidence 46666666553 3345555444 346666677777766433 44455666666666666543
No 23
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.36 E-value=3.1e-07 Score=56.51 Aligned_cols=34 Identities=38% Similarity=0.692 Sum_probs=31.5
Q ss_pred CCHHHHHHHhccCChhHHHHHhhcccchhhhhcc
Q 015886 15 LPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT 48 (398)
Q Consensus 15 LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw~~ 48 (398)
||+|++.+||++++.+|+.+++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987543
No 24
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.31 E-value=1e-07 Score=93.17 Aligned_cols=212 Identities=22% Similarity=0.228 Sum_probs=123.0
Q ss_pred hCCCeEEEEEecC-CccccCCccccCCCCeeEEEEecc-ccCCC------CccccCcccceEEEEEEE-eCHHHHHHHHh
Q 015886 113 ESEVKELVLVHWR-SERRNLPEIIFYVESLHVLELSYC-KLQQP------SENVKLFSLRKLALREVC-ADDQAIASLIS 183 (398)
Q Consensus 113 ~~~l~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~L~~~-~l~~~------~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~ 183 (398)
.++++++.+..+. .....+-.....++.|+.|+++++ ..... .....+++|+.|++.++. ++|..+..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 3577777777632 222224455667889999999873 11111 344567889999999888 58888888888
Q ss_pred cCccccEEEeeecCCcceee----cCCCCCCceEEEecCCCc-----ceeeecccCceEEEEeeeec-------------
Q 015886 184 GCPLIEYLEIRSCEGLESLD----LVNLSNLKEIILVNTSDI-----KRVEIKTSNVNALAIHQTYL------------- 241 (398)
Q Consensus 184 ~cp~Le~L~l~~~~~~~~~~----i~~~~~L~~L~l~~~~~l-----~~~~~~~p~L~~l~l~~~~~------------- 241 (398)
.||+||.|.+.+|..+.... ...+++|++|++.+|..+ ..+...+|+|+.+.+.+...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 89999999988887653322 223688999999988443 23333677766666543321
Q ss_pred -----cceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccccccccceEecccccccee--c
Q 015886 242 -----FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQ--V 314 (398)
Q Consensus 242 -----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~~~~--~ 314 (398)
.........+++++++.+.++...+......+.+||+|. ..+..+.. ....++.|++..|..... +
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~~------~~~~l~~L~l~~~~~~t~~~l 419 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRLC------RSDSLRVLNLSDCRLVTDKGL 419 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHhc------cCCccceEecccCccccccch
Confidence 011122345666666666655544444445555566552 22221100 111267777777776521 1
Q ss_pred c---ccCCCcceEEEeccce
Q 015886 315 E---IETPNLSIFKYHGDLI 331 (398)
Q Consensus 315 ~---~~~p~L~~l~~~~~~~ 331 (398)
. ..+.+++.+++.++..
T Consensus 420 ~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 420 RCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred HHHhhhhhccccCCccCccc
Confidence 1 1144555555555433
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.24 E-value=2.9e-06 Score=85.70 Aligned_cols=212 Identities=15% Similarity=0.054 Sum_probs=142.4
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
.+-..|+++.. ....+|..+. ++|+.|.+.++.+...+ ...++|++|+|++|.++. +. ...++|++|++
T Consensus 201 ~~~~~LdLs~~--~LtsLP~~l~--~~L~~L~L~~N~Lt~LP--~lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGES--GLTTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS--LP---VLPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCC--CCCcCCcchh--cCCCEEEccCCcCCCCC--CCCCCCcEEEecCCccCc--cc---Ccccccceeec
Confidence 45666766653 3346777654 47999999998876432 346899999999987742 11 13478999999
Q ss_pred eecCCcceeecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhh
Q 015886 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI 273 (398)
Q Consensus 194 ~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (398)
.+|.. ..+.- ..++|+.|.+.++ .+..++...|+|+.|+++++...... ...++|+.|++.++.+.. +.
T Consensus 270 s~N~L-~~Lp~-lp~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N~L~~Lp---~lp~~L~~L~Ls~N~L~~--LP--- 338 (788)
T PRK15387 270 FSNPL-THLPA-LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLTS--LP--- 338 (788)
T ss_pred cCCch-hhhhh-chhhcCEEECcCC-ccccccccccccceeECCCCccccCC---CCcccccccccccCcccc--cc---
Confidence 88743 22221 1267999999887 45555556689999999987622211 123468889998877653 11
Q ss_pred cCCCCCcEEeccCccccccccccccccceEeccccccceeccccCCCcceEEEeccce-eeccccccccceeeeecc
Q 015886 274 SKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-SFSSNALSLSETSLCFSS 349 (398)
Q Consensus 274 ~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~p~L~~l~~~~~~~-~~~~~~~~L~~l~i~~~~ 349 (398)
...++|+.|+++++ .++.++..+++|+.|+++++.. ..+....++|+.|.+.++.. .+-...++|+.++++.+.
T Consensus 339 ~lp~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L-~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~ 413 (788)
T PRK15387 339 TLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRL-TSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNR 413 (788)
T ss_pred ccccccceEecCCC-ccCCCCCCCcccceehhhcccc-ccCcccccccceEEecCCcccCCCCcccCCCEEEccCCc
Confidence 12258999999985 5666776677899998887653 34444445789999988776 222234578888886664
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.23 E-value=4.1e-07 Score=75.11 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=21.6
Q ss_pred ccCceEEEEeeeecc--ceeEeecCCCCCceEEeeccCCchH--HHhhhhcCCCCCcEEeccC
Q 015886 228 TSNVNALAIHQTYLF--PIEVNVSSCGNLKCLKFDFLPIEDE--WLCNGISKLPLLEYLSMTK 286 (398)
Q Consensus 228 ~p~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~ 286 (398)
+|+|++|+++++... .....+..+|+|+.|++.++.+... --..++..+|+|+.|+-..
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 455555555544411 1112345566666666666555431 1123344566666666554
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.11 E-value=2.8e-07 Score=91.38 Aligned_cols=123 Identities=17% Similarity=0.285 Sum_probs=54.0
Q ss_pred ccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecC--CcceeecCCCCCCceEEEecCCCcceee---ecccCceEEEE
Q 015886 162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE--GLESLDLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAI 236 (398)
Q Consensus 162 ~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~--~~~~~~i~~~~~L~~L~l~~~~~l~~~~---~~~p~L~~l~l 236 (398)
.|+.|.+.++.++|..+.- +.++++|+.|+++++. .+....+..++.|+.|.++++ .++.++ ..++.|+.|..
T Consensus 360 ~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhh
Confidence 3333444444443333322 3344444444444441 112222233344444444443 222222 13344444444
Q ss_pred eeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcc
Q 015886 237 HQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (398)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (398)
.++....++ .+..++.|+.++++.+++....+.+.... |+||+|++++..
T Consensus 438 hsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 438 HSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred cCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 443321111 44556666666666666655444443333 666666666643
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.10 E-value=1.1e-05 Score=81.93 Aligned_cols=178 Identities=17% Similarity=0.096 Sum_probs=99.9
Q ss_pred CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecC
Q 015886 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~ 218 (398)
.+...|++.+..+...+.. -.++|+.|+|++|.+.. +.. ..+++|+.|++.+|. +..+...-.++|+.|.+++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~Lts--LP~--~l~~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPAC-IPEQITTLILDNNELKS--LPE--NLQGNIKTLYANSNQ-LTSIPATLPDTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCc--CCh--hhccCCCEEECCCCc-cccCChhhhccccEEECcCC
Confidence 4568899988766543221 13579999999998742 211 123689999999874 33333222368999999998
Q ss_pred CCcceeee-cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc-c
Q 015886 219 SDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-S 296 (398)
Q Consensus 219 ~~l~~~~~-~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-~ 296 (398)
.+..++. ...+|+.|+++++........+ .++|+.|+++++.+..- ...+ .++|+.|+++++ .++.++. .
T Consensus 252 -~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~L--P~~l--p~sL~~L~Ls~N-~Lt~LP~~l 323 (754)
T PRK15370 252 -RITELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRTL--PAHL--PSGITHLNVQSN-SLTALPETL 323 (754)
T ss_pred -ccCcCChhHhCCCCEEECcCCccCcccccc--CCCCcEEECCCCccccC--cccc--hhhHHHHHhcCC-ccccCCccc
Confidence 3444443 2347999999877632221112 35899999998876531 1100 134555555553 2223322 2
Q ss_pred ccccceEeccccccceeccc-cCCCcceEEEeccce
Q 015886 297 SPCLKTLILECCDKLIQVEI-ETPNLSIFKYHGDLI 331 (398)
Q Consensus 297 ~~~L~~L~l~~c~~~~~~~~-~~p~L~~l~~~~~~~ 331 (398)
+++|+.|++.+|..- .+.. ..++|+.|.++++..
T Consensus 324 ~~sL~~L~Ls~N~Lt-~LP~~l~~sL~~L~Ls~N~L 358 (754)
T PRK15370 324 PPGLKTLEAGENALT-SLPASLPPELQVLDVSKNQI 358 (754)
T ss_pred cccceeccccCCccc-cCChhhcCcccEEECCCCCC
Confidence 345555555555421 1111 123455555555443
No 29
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.07 E-value=1.3e-06 Score=87.72 Aligned_cols=148 Identities=18% Similarity=0.158 Sum_probs=98.9
Q ss_pred CCeeEEEEeccccCCC----CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEE
Q 015886 139 ESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~----~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~ 214 (398)
.+|++|+++|...-.. ....-||+|++|.+.+..+..+.+..+..++|+|..|+++++.-..-..++.+++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 6788888877433222 345678999999999999966668888899999999999986543334566677777776
Q ss_pred EecCCCcc--ee-e-ecccCceEEEEeeeeccceeE-------eecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEe
Q 015886 215 LVNTSDIK--RV-E-IKTSNVNALAIHQTYLFPIEV-------NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS 283 (398)
Q Consensus 215 l~~~~~l~--~~-~-~~~p~L~~l~l~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 283 (398)
+.+-+.-. .+ . .+..+|+.|+++......... .-..+|+|+.|+.++..++.+.+..++..-|+|+...
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 65441111 11 1 156678888887665221110 1134788888888888888777777777777777766
Q ss_pred ccC
Q 015886 284 MTK 286 (398)
Q Consensus 284 l~~ 286 (398)
.-+
T Consensus 282 ~~~ 284 (699)
T KOG3665|consen 282 ALD 284 (699)
T ss_pred hhh
Confidence 554
No 30
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.98 E-value=2.2e-07 Score=92.03 Aligned_cols=45 Identities=31% Similarity=0.215 Sum_probs=25.5
Q ss_pred ccCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEe
Q 015886 129 RNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA 173 (398)
Q Consensus 129 ~~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~ 173 (398)
..+|..++...+|+.|.+..|.+... +....+.+|++|+|..+.+
T Consensus 277 ~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 277 VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence 34444444445555555555544433 3344477888888887776
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=2.3e-06 Score=74.54 Aligned_cols=175 Identities=18% Similarity=0.156 Sum_probs=126.9
Q ss_pred CCCeEEEEEec-CCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886 114 SEVKELVLVHW-RSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (398)
Q Consensus 114 ~~l~~L~l~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 190 (398)
.+++++++... -....++...+...+.|+.|+|+.+.+.++ .......+|+.|.|.+...+-...+..+...|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 48899988763 234445666667789999999999988766 223566799999999988888888888999999999
Q ss_pred EEeeecCCc------ceeecCCCCCCceEEEecC-----CCcceeeecccCceEEEEeeee--ccceeEeecCCCCCceE
Q 015886 191 LEIRSCEGL------ESLDLVNLSNLKEIILVNT-----SDIKRVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCL 257 (398)
Q Consensus 191 L~l~~~~~~------~~~~i~~~~~L~~L~l~~~-----~~l~~~~~~~p~L~~l~l~~~~--~~~~~~~~~~~~~L~~L 257 (398)
|.++.+..- .+..-. .+.++.|....| .+...+.--.||+.++.+..++ .......+..+|.+..|
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~-s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDW-STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhccchhhhhcccccccccc-chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 998876321 111111 267888888888 2333444467899999888776 22233456778888899
Q ss_pred EeeccCCch-HHHhhhhcCCCCCcEEeccCcccc
Q 015886 258 KFDFLPIED-EWLCNGISKLPLLEYLSMTKCHKL 290 (398)
Q Consensus 258 ~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~~ 290 (398)
.+..+.+++ +++.. +.+||.|..|.+...+..
T Consensus 230 nL~~~~idswasvD~-Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 230 NLGANNIDSWASVDA-LNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhcccccccHHHHHH-HcCCchhheeeccCCccc
Confidence 999888765 55555 778999999999985443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.94 E-value=3.1e-06 Score=69.95 Aligned_cols=36 Identities=31% Similarity=0.225 Sum_probs=10.3
Q ss_pred CCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccC
Q 015886 251 CGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (398)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (398)
+|+|++|+++++.+.+-.-...++.+|+|+.|++.+
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence 455555555544443311112233445555555544
No 33
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.92 E-value=8.1e-07 Score=86.88 Aligned_cols=130 Identities=19% Similarity=0.221 Sum_probs=84.2
Q ss_pred ccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeec-CCcce------eecCCCCCCceEEEecCCCcceee----
Q 015886 158 VKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSC-EGLES------LDLVNLSNLKEIILVNTSDIKRVE---- 225 (398)
Q Consensus 158 ~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~-~~~~~------~~i~~~~~L~~L~l~~~~~l~~~~---- 225 (398)
..+++|+.|.+.++.. ++..+..+...||.|++|.+.+| ..... .....+++|+.|++..|..+....
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3478888888888765 66667777888888888888773 22211 112235788888888874333333
Q ss_pred -ecccCceEEEEeeeec---cceeEeecCCCCCceEEeeccCC-chHHHhhhhcCCCCCcEEeccCc
Q 015886 226 -IKTSNVNALAIHQTYL---FPIEVNVSSCGNLKCLKFDFLPI-EDEWLCNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 226 -~~~p~L~~l~l~~~~~---~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~c 287 (398)
..||+|+.|.+.++.. .........+++|++|+++++.. ++..+..+..+|++|+.|.+..+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 2478888888666652 11222345678888888886653 45666666777888777665553
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.83 E-value=4.1e-06 Score=75.74 Aligned_cols=89 Identities=20% Similarity=0.210 Sum_probs=61.0
Q ss_pred hhhcCCCCCcEEeccCccccccccc----cccccceEeccccccc---eeccccCCCcceEEEeccce-----eeccccc
Q 015886 271 NGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKL---IQVEIETPNLSIFKYHGDLI-----SFSSNAL 338 (398)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~~~---~~~~~~~p~L~~l~~~~~~~-----~~~~~~~ 338 (398)
.-+..+|+|++|++++. .++.+.. ....++.|.+.....- ..+.....+|+.|.+.|.++ ..++.+.
T Consensus 268 ~cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred HHHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 33677899999999884 3343333 4567788877765542 34556777899999999988 7888899
Q ss_pred cccceeeeecc-cchhhHHHHHH
Q 015886 339 SLSETSLCFSS-HLMVNIEWVVE 360 (398)
Q Consensus 339 ~L~~l~i~~~~-~~~~~~~~~~~ 360 (398)
+|.++.+-.+. .-.....|+.+
T Consensus 347 ~l~~l~l~~Np~~CnC~l~wl~~ 369 (498)
T KOG4237|consen 347 SLSTLNLLSNPFNCNCRLAWLGE 369 (498)
T ss_pred eeeeeehccCcccCccchHHHHH
Confidence 99999994443 11224455544
No 35
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=4.6e-06 Score=83.74 Aligned_cols=140 Identities=19% Similarity=0.227 Sum_probs=78.2
Q ss_pred ccccEEEeeecCCcc-ee--ecC-CCCCCceEEEecC----CCcceeeecccCceEEEEeeeeccceeEeecCCCCCceE
Q 015886 186 PLIEYLEIRSCEGLE-SL--DLV-NLSNLKEIILVNT----SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCL 257 (398)
Q Consensus 186 p~Le~L~l~~~~~~~-~~--~i~-~~~~L~~L~l~~~----~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L 257 (398)
.+|+.|++++...+. .+ .++ -+|+|++|.+.+- ..+..+..+.|||.+|+++|+..... ..++.+.+|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 467777777644331 11 122 2678888877764 22333344677888888877773332 455677777777
Q ss_pred EeeccCCch-HHHhhhhcCCCCCcEEeccCcccccc---------ccccccccceEeccccccc----eeccccCCCcce
Q 015886 258 KFDFLPIED-EWLCNGISKLPLLEYLSMTKCHKLTS---------VRISSPCLKTLILECCDKL----IQVEIETPNLSI 323 (398)
Q Consensus 258 ~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~~~~---------~~~~~~~L~~L~l~~c~~~----~~~~~~~p~L~~ 323 (398)
.+.+-.+.. ..+.. +-.+.+|+.|+++.-..... -+..+|.|+.|+.++-..- +.+...-|+|+.
T Consensus 201 ~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 777666654 33344 33577788888877321111 1114566777766654432 233345555555
Q ss_pred EEEe
Q 015886 324 FKYH 327 (398)
Q Consensus 324 l~~~ 327 (398)
+...
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 4433
No 36
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.59 E-value=8.6e-07 Score=71.00 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=34.9
Q ss_pred ccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccC
Q 015886 228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (398)
Q Consensus 228 ~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (398)
+..|+-|+++++...-....++.+.+|+.|.+..+.+.. +.+-+..+..|+.|++.+
T Consensus 126 m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQG 182 (264)
T ss_pred HHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhccc
Confidence 345666666666644444567778888888887665422 222244456777777777
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.53 E-value=3.9e-05 Score=67.12 Aligned_cols=204 Identities=14% Similarity=0.081 Sum_probs=89.3
Q ss_pred CCCeeEEEEeccccCCC----------CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCC
Q 015886 138 VESLHVLELSYCKLQQP----------SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNL 207 (398)
Q Consensus 138 ~~~L~~L~L~~~~l~~~----------~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~ 207 (398)
|..|+.|..++..-+.. .....|.+|+.+.++.|. .+.+..+...-|.|+.+.+++......-.+.
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~-- 256 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHNTTIQDVPSLL-- 256 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeeccccccccccc--
Confidence 56677777776421111 122345677777777663 3344444455577777776653211000000
Q ss_pred CCCceEEEecC-----CCcceeee-cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcE
Q 015886 208 SNLKEIILVNT-----SDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY 281 (398)
Q Consensus 208 ~~L~~L~l~~~-----~~l~~~~~-~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 281 (398)
|.=+.-+.++- .+.....+ .-..|+.++++++....+--++.-.|.++.|+++.+.+... .. ++.+++|+.
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~n-La~L~~L~~ 333 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QN-LAELPQLQL 333 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hh-hhhcccceE
Confidence 00000000000 00000000 11235555555554322222334455666666665554331 11 334566666
Q ss_pred EeccCcc--ccccccccccccceEeccccccce-eccccCCCcceEEEeccce------eeccccccccceeeeec
Q 015886 282 LSMTKCH--KLTSVRISSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI------SFSSNALSLSETSLCFS 348 (398)
Q Consensus 282 L~l~~c~--~~~~~~~~~~~L~~L~l~~c~~~~-~~~~~~p~L~~l~~~~~~~------~~~~~~~~L~~l~i~~~ 348 (398)
|++++.. .+........+.+.|.+.+...-. +-...+-+|.+|+++++++ ..+.+.+.|+.+.+..+
T Consensus 334 LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 334 LDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred eecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 6666631 122222244555555554432110 1112223455555555555 45556666776666544
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.45 E-value=2.5e-05 Score=76.11 Aligned_cols=201 Identities=17% Similarity=0.133 Sum_probs=119.5
Q ss_pred ccCCCCceEEEEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCcc-
Q 015886 79 QRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSEN- 157 (398)
Q Consensus 79 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~- 157 (398)
...+.+++.|+...+...-......+...+.. -+..+.+.+.........-|-.++...+|++|.+.+|.+......
T Consensus 51 g~~g~~~~~f~a~~s~~ads~vl~qLq~i~d~--lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~ 128 (1096)
T KOG1859|consen 51 GLSGAPVDYFRAYVSDNADSRVLEQLQRILDF--LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQ 128 (1096)
T ss_pred ccCCCCCceeEEecCCcccchHHHHHHHHHHH--HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhH
Confidence 34566777776654432100111122222222 235566665553222222277889999999999999865432111
Q ss_pred --------------------------------ccCcccceEEEEEEEe--CHHHHHHHHhcCccccEEEeeecCCcceee
Q 015886 158 --------------------------------VKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCEGLESLD 203 (398)
Q Consensus 158 --------------------------------~~~~~L~~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~ 203 (398)
.....|...+.++|.. -|+.++ -.|.||.|+|+++...+.-.
T Consensus 129 ~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLq----ll~ale~LnLshNk~~~v~~ 204 (1096)
T KOG1859|consen 129 ELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQ----LLPALESLNLSHNKFTKVDN 204 (1096)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHH----HHHHhhhhccchhhhhhhHH
Confidence 1112344444444443 233332 34889999999886655445
Q ss_pred cCCCCCCceEEEecC--CCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcE
Q 015886 204 LVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY 281 (398)
Q Consensus 204 i~~~~~L~~L~l~~~--~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 281 (398)
+..|+.|++|+++++ ..+..+....-.|.-|.+.++.-.. ...+.++.+|..|++++|-+.+..-...+..+..|+.
T Consensus 205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~ 283 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV 283 (1096)
T ss_pred HHhcccccccccccchhccccccchhhhhheeeeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence 666899999999876 2222333323348888888877222 3356788899999999887766444444555677888
Q ss_pred EeccC
Q 015886 282 LSMTK 286 (398)
Q Consensus 282 L~l~~ 286 (398)
|.|.+
T Consensus 284 L~LeG 288 (1096)
T KOG1859|consen 284 LWLEG 288 (1096)
T ss_pred HhhcC
Confidence 88888
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.39 E-value=0.0011 Score=68.82 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=71.3
Q ss_pred CCCeeEEEEeccccCCCCccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEE
Q 015886 138 VESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII 214 (398)
Q Consensus 138 ~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~ 214 (398)
....+.+.+.++.+........+|.|++|-+..+.. -...-..++...|.|+.|++++|.....+ .|+.+-+||.|+
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 356677777776665555666777888888887752 11111233556788999999887776554 355566777777
Q ss_pred EecCCCcceeeecc---cCceEEEEeeeeccceeE-eecCCCCCceEEeecc
Q 015886 215 LVNTSDIKRVEIKT---SNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFL 262 (398)
Q Consensus 215 l~~~~~l~~~~~~~---p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 262 (398)
+.++ .+..++... ..|.+|++.......... ....+++|++|.+...
T Consensus 602 L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 602 LSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 7766 343444322 334455544433111111 1233666666666543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.38 E-value=0.00026 Score=62.17 Aligned_cols=170 Identities=18% Similarity=0.197 Sum_probs=106.9
Q ss_pred HHHHHHhcCccccEEEeeecCCc----------ceeecCCCCCCceEEEecC--CCcceeeecccCceEEEEeeee----
Q 015886 177 AIASLISGCPLIEYLEIRSCEGL----------ESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTY---- 240 (398)
Q Consensus 177 ~l~~l~~~cp~Le~L~l~~~~~~----------~~~~i~~~~~L~~L~l~~~--~~l~~~~~~~p~L~~l~l~~~~---- 240 (398)
++.+++.-|.+|..|.+....+. -.+.+..+.+|+.+.++.| .++..+...-|.|.++......
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~ 252 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDV 252 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccc
Confidence 45666777777777777654322 1123334677777777777 4555555566777776654433
Q ss_pred --------------------ccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc--cccc
Q 015886 241 --------------------LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--ISSP 298 (398)
Q Consensus 241 --------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~--~~~~ 298 (398)
.++....+.....|++++++++.+.. +.+-.+-.|.++.|+++... +..+. ...+
T Consensus 253 ~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~ 329 (490)
T KOG1259|consen 253 PSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNR-IRTVQNLAELP 329 (490)
T ss_pred ccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh--hhhhhhhccceeEEeccccc-eeeehhhhhcc
Confidence 11223345567789999999888754 23334567999999999953 22222 2578
Q ss_pred ccceEeccccccc--eeccccCCCcceEEEeccce---eeccccccccceeeeecc
Q 015886 299 CLKTLILECCDKL--IQVEIETPNLSIFKYHGDLI---SFSSNALSLSETSLCFSS 349 (398)
Q Consensus 299 ~L~~L~l~~c~~~--~~~~~~~p~L~~l~~~~~~~---~~~~~~~~L~~l~i~~~~ 349 (398)
+|..|++++.... ..+...+-|.++|.+.++.+ .-+...-+|..+++..+.
T Consensus 330 ~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 330 QLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred cceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccc
Confidence 9999999987654 34455666778887777655 223345556666665443
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.35 E-value=0.00098 Score=62.27 Aligned_cols=135 Identities=16% Similarity=0.222 Sum_probs=65.5
Q ss_pred CcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecCCCcceeeecccCceEEEEeee
Q 015886 160 LFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQT 239 (398)
Q Consensus 160 ~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~ 239 (398)
+++++.|++++|.+.. +. .--++|++|.+.+|..+..+.-.-.++|++|.+.+|..+..++ ++|+.|++.+.
T Consensus 51 ~~~l~~L~Is~c~L~s--LP---~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~L~~n 122 (426)
T PRK15386 51 ARASGRLYIKDCDIES--LP---VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLEIKGS 122 (426)
T ss_pred hcCCCEEEeCCCCCcc--cC---CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc---cccceEEeCCC
Confidence 5666666666663311 11 1112466666666655543321112466666666664444332 34666665433
Q ss_pred eccceeEeecCCC-CCceEEeeccCCchHHHhhhhcCC-CCCcEEeccCccccccccccccccceEecccc
Q 015886 240 YLFPIEVNVSSCG-NLKCLKFDFLPIEDEWLCNGISKL-PLLEYLSMTKCHKLTSVRISSPCLKTLILECC 308 (398)
Q Consensus 240 ~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c 308 (398)
.. ..+..+| +|+.|.+.+...... ......+ ++|+.|.+++|.....-..-+++|++|.++.+
T Consensus 123 ~~----~~L~~LPssLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 123 AT----DSIKNVPNGLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred CC----cccccCcchHhheeccccccccc--cccccccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 21 1234443 566666643221100 0000112 57888888887654322223457788877654
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.28 E-value=5.4e-05 Score=78.22 Aligned_cols=196 Identities=22% Similarity=0.220 Sum_probs=100.2
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 192 (398)
+.++.|+++. +.....+|..+..+-+|++|+++++.+..- .....+..|.+|++..+..-. .+..+....++|+.|.
T Consensus 571 ~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 571 PLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLR 648 (889)
T ss_pred cceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc-cccchhhhcccccEEE
Confidence 3555555554 334455666666666666666666655322 445555566666665543311 1123334456666666
Q ss_pred eeecC-Ccceee---cCCCCCCceEEEecCCC--cceeeecccCce----EEEEeeeeccceeEeecCCCCCceEEeecc
Q 015886 193 IRSCE-GLESLD---LVNLSNLKEIILVNTSD--IKRVEIKTSNVN----ALAIHQTYLFPIEVNVSSCGNLKCLKFDFL 262 (398)
Q Consensus 193 l~~~~-~~~~~~---i~~~~~L~~L~l~~~~~--l~~~~~~~p~L~----~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (398)
+.... ...... +..+.+|+.+.+..+.. +..+ ...+.|. .+.+.++........+..+.+|+.|.+.++
T Consensus 649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l-~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 649 LPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL-LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDC 727 (889)
T ss_pred eeccccccchhhHHhhhcccchhhheeecchhHhHhhh-hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcC
Confidence 65432 111111 12234444444433321 0111 1222332 222222222233445677889999999877
Q ss_pred CCchHHHhh-----hhcCCCCCcEEeccCccccccccc--cccccceEeccccccce
Q 015886 263 PIEDEWLCN-----GISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLI 312 (398)
Q Consensus 263 ~~~~~~~~~-----~~~~~~~L~~L~l~~c~~~~~~~~--~~~~L~~L~l~~c~~~~ 312 (398)
.+.+..... ....|+++..+.+.+|........ -+|+|+.|++..|...+
T Consensus 728 ~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 728 GISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred CCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccc
Confidence 765421110 011356777777777766655553 56788888888888763
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.21 E-value=0.00032 Score=65.46 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=94.7
Q ss_pred CCCCeeEEEEeccccCCCCccccCc-ccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEE
Q 015886 137 YVESLHVLELSYCKLQQPSENVKLF-SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (398)
Q Consensus 137 ~~~~L~~L~L~~~~l~~~~~~~~~~-~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l 215 (398)
.|.++++|++++|.+...+ .+| +|+.|.+++|..- ..+...+ .+.|+.|.+.+|..+..+ .++|+.|.+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sL----P~sLe~L~L 119 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP---VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGL----PESVRSLEI 119 (426)
T ss_pred HhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccccc----ccccceEEe
Confidence 4688999999999766433 344 6999999876431 1111111 368999999998765432 267999988
Q ss_pred ecCCCcceeeecccCceEEEEeeeeccceeEee-cCC-CCCceEEeeccCCchHHHhhhhcCC-CCCcEEeccCcc--cc
Q 015886 216 VNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNV-SSC-GNLKCLKFDFLPIEDEWLCNGISKL-PLLEYLSMTKCH--KL 290 (398)
Q Consensus 216 ~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~-~~~-~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~--~~ 290 (398)
... ....+..-.++|+.|.+.+..... ...+ ..+ ++|+.|.+.++.... +...+ .+|+.|+++.+. .+
T Consensus 120 ~~n-~~~~L~~LPssLk~L~I~~~n~~~-~~~lp~~LPsSLk~L~Is~c~~i~-----LP~~LP~SLk~L~ls~n~~~sL 192 (426)
T PRK15386 120 KGS-ATDSIKNVPNGLTSLSINSYNPEN-QARIDNLISPSLKTLSLTGCSNII-----LPEKLPESLQSITLHIEQKTTW 192 (426)
T ss_pred CCC-CCcccccCcchHhheecccccccc-ccccccccCCcccEEEecCCCccc-----CcccccccCcEEEecccccccc
Confidence 643 333333334578888885433110 0111 123 589999998776432 11112 589999997742 21
Q ss_pred cccc-ccccccceEeccccccc
Q 015886 291 TSVR-ISSPCLKTLILECCDKL 311 (398)
Q Consensus 291 ~~~~-~~~~~L~~L~l~~c~~~ 311 (398)
+-.. .-++++ .|.+.+|..+
T Consensus 193 eI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 193 NISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred cCccccccccc-Eechhhhccc
Confidence 1111 123566 8888888664
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.00038 Score=61.06 Aligned_cols=148 Identities=13% Similarity=0.087 Sum_probs=91.0
Q ss_pred CeeEEEEeccccCCC----CccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCcceeecC--CCCCCce
Q 015886 140 SLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDLV--NLSNLKE 212 (398)
Q Consensus 140 ~L~~L~L~~~~l~~~----~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~--~~~~L~~ 212 (398)
-++-|.+.+|.+... .....+..++.|+|.++.+ +-..+..++...|.|+.|+++.+.-...+.-- ...+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 455677777777655 2334567899999999999 66778888999999999999987554333211 2468999
Q ss_pred EEEecC----CCcceeeecccCceEEEEeeeeccceeE---eecC-CCCCceEEeeccCCc-hHHHhhhhcCCCCCcEEe
Q 015886 213 IILVNT----SDIKRVEIKTSNVNALAIHQTYLFPIEV---NVSS-CGNLKCLKFDFLPIE-DEWLCNGISKLPLLEYLS 283 (398)
Q Consensus 213 L~l~~~----~~l~~~~~~~p~L~~l~l~~~~~~~~~~---~~~~-~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~ 283 (398)
|.+.+. ...+...-..|.++.|.++.+....... .... -+.+++|++..|... +.....+...|||+..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 988876 2222233355666677666553111000 0111 124555555544432 344455566678888777
Q ss_pred ccCc
Q 015886 284 MTKC 287 (398)
Q Consensus 284 l~~c 287 (398)
+..|
T Consensus 206 v~e~ 209 (418)
T KOG2982|consen 206 VCEG 209 (418)
T ss_pred eecC
Confidence 7665
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.13 E-value=0.00022 Score=61.75 Aligned_cols=103 Identities=19% Similarity=0.055 Sum_probs=64.4
Q ss_pred cccCceEEEEeeee--ccce---eEeecCCCCCceEEeeccCCchHHHhhh----hcCCCCCcEEeccCcc-------cc
Q 015886 227 KTSNVNALAIHQTY--LFPI---EVNVSSCGNLKCLKFDFLPIEDEWLCNG----ISKLPLLEYLSMTKCH-------KL 290 (398)
Q Consensus 227 ~~p~L~~l~l~~~~--~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~c~-------~~ 290 (398)
+.|.|+++.+..+. ..+. ...+.+-.+|+.+.+..+.|..+++..+ +.++.+|+.|+|.... .+
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 46788888877665 1111 1123344689999999888766533322 4578999999998841 11
Q ss_pred ccccccccccceEeccccccce----ec-----cccCCCcceEEEecc
Q 015886 291 TSVRISSPCLKTLILECCDKLI----QV-----EIETPNLSIFKYHGD 329 (398)
Q Consensus 291 ~~~~~~~~~L~~L~l~~c~~~~----~~-----~~~~p~L~~l~~~~~ 329 (398)
.......+.|+.|.+..|-... ++ ....|+|..|+..-.
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 1112245678999999998752 11 256788887766543
No 46
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.08 E-value=1.2e-05 Score=64.49 Aligned_cols=133 Identities=18% Similarity=0.227 Sum_probs=59.9
Q ss_pred ccCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee---c
Q 015886 129 RNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD---L 204 (398)
Q Consensus 129 ~~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~---i 204 (398)
..+|+.+....+|+.|++.++.+... ....++|.|+.|++.-++.. .+.+=+.++|.||.|++.++.-.+..- +
T Consensus 46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~e~~lpgnf 123 (264)
T KOG0617|consen 46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLNENSLPGNF 123 (264)
T ss_pred eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccccccCCcch
Confidence 34444444555555555555544322 33444555555555433320 011113344555555555442221110 0
Q ss_pred CCCCCCceEEEecCCCcceeee---cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCC
Q 015886 205 VNLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI 264 (398)
Q Consensus 205 ~~~~~L~~L~l~~~~~l~~~~~---~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (398)
..+.+|+-|.+.++ .++.++- ...+|+.|.+..+.-......++.+..|++|++.++.+
T Consensus 124 f~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 124 FYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 01234444444443 2222221 33445555555544333344567777888888887764
No 47
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.00015 Score=62.34 Aligned_cols=104 Identities=26% Similarity=0.258 Sum_probs=71.2
Q ss_pred CCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEe
Q 015886 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 115 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l 193 (398)
.++++.++.+......+....-....|+.|++.++.+.....+..+|+||+|.++.+.+ ....+.-++..||+|++|++
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l 98 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL 98 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEee
Confidence 34555555544444444444444577888888888887767777889999999998855 33456666778899999999
Q ss_pred eecCCc--cee-ecCCCCCCceEEEecC
Q 015886 194 RSCEGL--ESL-DLVNLSNLKEIILVNT 218 (398)
Q Consensus 194 ~~~~~~--~~~-~i~~~~~L~~L~l~~~ 218 (398)
+++..- +.+ .+..+++|++|.+.+|
T Consensus 99 s~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 99 SGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cCCccccccccchhhhhcchhhhhcccC
Confidence 987542 222 1233577888888888
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.81 E-value=0.00027 Score=47.55 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=24.4
Q ss_pred CeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeec
Q 015886 140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC 196 (398)
Q Consensus 140 ~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~ 196 (398)
+|++|++.+|.+... ..+..+++|++|+++++.+..-. ...+.++|+|+.|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence 455555555544322 23344555555555544441100 011344555555555444
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.72 E-value=0.00055 Score=45.98 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=16.7
Q ss_pred cCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886 249 SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (398)
..+++|++|+++++.+..- ....+..+++|+.|+++++
T Consensus 22 ~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 22 SNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred cCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 4445555555554444321 1122344455555555443
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.70 E-value=0.0011 Score=63.23 Aligned_cols=165 Identities=21% Similarity=0.263 Sum_probs=92.1
Q ss_pred CCCeeEEEEeccccCCCCccc-cC-cccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecC-CCCCCceEE
Q 015886 138 VESLHVLELSYCKLQQPSENV-KL-FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLV-NLSNLKEII 214 (398)
Q Consensus 138 ~~~L~~L~L~~~~l~~~~~~~-~~-~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~-~~~~L~~L~ 214 (398)
.+.++.|.+.++.+..-+... .. ++|+.|+++++.+.+.. .-+..+|.|+.|++.++....-.... ..+.|+.|.
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 356777887777665443333 33 27888888777653321 22456788888888877554332222 347777777
Q ss_pred EecCCCcceeee--cccC-ceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccc
Q 015886 215 LVNTSDIKRVEI--KTSN-VNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291 (398)
Q Consensus 215 l~~~~~l~~~~~--~~p~-L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 291 (398)
++++ .+..++. ..++ |+++.+++.........+..+.++..+.+..+.+... ......+++++.|+++++ .+.
T Consensus 193 ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n-~i~ 268 (394)
T COG4886 193 LSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNN-QIS 268 (394)
T ss_pred ccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec--cchhccccccceeccccc-ccc
Confidence 7776 4444443 2344 7777777663222223345555666666555544331 233455666777777774 222
Q ss_pred cccc--cccccceEecccc
Q 015886 292 SVRI--SSPCLKTLILECC 308 (398)
Q Consensus 292 ~~~~--~~~~L~~L~l~~c 308 (398)
.+.. ....|+.|++++-
T Consensus 269 ~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 269 SISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ccccccccCccCEEeccCc
Confidence 2222 4456666666553
No 51
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.50 E-value=1.1e-05 Score=73.13 Aligned_cols=173 Identities=18% Similarity=0.129 Sum_probs=86.7
Q ss_pred ccCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEe--CHHHHHHHHhcCccccEEEeeecCCcce--ee
Q 015886 129 RNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCEGLES--LD 203 (398)
Q Consensus 129 ~~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~~ 203 (398)
..+|..+....+|++|+.+.+.+..- +....+-.|..|+..++.+ ..++ +..|..|..|.+.++..... -.
T Consensus 104 s~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~----~~~~~~l~~l~~~~n~l~~l~~~~ 179 (565)
T KOG0472|consen 104 SELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPED----MVNLSKLSKLDLEGNKLKALPENH 179 (565)
T ss_pred hhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchH----HHHHHHHHHhhccccchhhCCHHH
Confidence 34454444445555555554443222 3344444444444444443 1111 12233444444444322110 01
Q ss_pred cCCCCCCceEEEecCCCcceeee---cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCc
Q 015886 204 LVNLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLE 280 (398)
Q Consensus 204 i~~~~~L~~L~l~~~~~l~~~~~---~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 280 (398)
+. ..+|++|+...+ .++.++- ...+|+-|++..+... ....|++|+.|++|+++.+.+..- ..++.+++++|.
T Consensus 180 i~-m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l~ 255 (565)
T KOG0472|consen 180 IA-MKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIEML-PAEHLKHLNSLL 255 (565)
T ss_pred HH-HHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHHhh-HHHHhcccccce
Confidence 11 356666655443 3444443 2334444555544422 222678888888888876665432 234567788888
Q ss_pred EEeccCccccccccc---cccccceEecccccc
Q 015886 281 YLSMTKCHKLTSVRI---SSPCLKTLILECCDK 310 (398)
Q Consensus 281 ~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~ 310 (398)
.|++... .++.++. ...+|++|++++...
T Consensus 256 vLDLRdN-klke~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 256 VLDLRDN-KLKEVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred eeecccc-ccccCchHHHHhhhhhhhcccCCcc
Confidence 8888884 4555554 345677777776553
No 52
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.46 E-value=0.0048 Score=33.25 Aligned_cols=25 Identities=44% Similarity=0.852 Sum_probs=22.4
Q ss_pred ccceEEEEEEEe-CHHHHHHHHhcCc
Q 015886 162 SLRKLALREVCA-DDQAIASLISGCP 186 (398)
Q Consensus 162 ~L~~L~L~~~~~-~~~~l~~l~~~cp 186 (398)
+||+|+|.++.+ ++..+..++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 6668999999998
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.00026 Score=61.53 Aligned_cols=96 Identities=22% Similarity=0.166 Sum_probs=71.3
Q ss_pred CCCCceEEEecCCCcceeee--cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEec
Q 015886 207 LSNLKEIILVNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM 284 (398)
Q Consensus 207 ~~~L~~L~l~~~~~l~~~~~--~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 284 (398)
+.+.++|+.++| ++..|.+ .+|.|+-|.++-+... ....+..|.+|++|+|..+.+.+-.-...+.++|+|++|-|
T Consensus 18 l~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIs-sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKIS-SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCC-CccHHHHHHhcccceeEEeeccccc-cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 467888999998 6667765 7899999999877632 23456789999999999999888666677889999999998
Q ss_pred cCccccc--------cccccccccceEe
Q 015886 285 TKCHKLT--------SVRISSPCLKTLI 304 (398)
Q Consensus 285 ~~c~~~~--------~~~~~~~~L~~L~ 304 (398)
...+-.. .+...+|+|++|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 8732111 1223577888773
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.38 E-value=0.00056 Score=58.98 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=36.6
Q ss_pred CCCCceEEEecC-----CCcceeeecccCceEEEEeeeeccc--eeEeecCCCCCceEEeeccCCch--HHHhhhhcCCC
Q 015886 207 LSNLKEIILVNT-----SDIKRVEIKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIED--EWLCNGISKLP 277 (398)
Q Consensus 207 ~~~L~~L~l~~~-----~~l~~~~~~~p~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~ 277 (398)
+|+||.|.++.+ ..+..+...+|+|+.+.++++.... ..--+..+++|..|++.++.... +--..++..+|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 456666666544 2333333455666666666665221 01112344555555555443322 11122333445
Q ss_pred CCcEEeccC
Q 015886 278 LLEYLSMTK 286 (398)
Q Consensus 278 ~L~~L~l~~ 286 (398)
+|+.|+-..
T Consensus 144 ~L~~LD~~d 152 (260)
T KOG2739|consen 144 SLKYLDGCD 152 (260)
T ss_pred hhccccccc
Confidence 555555444
No 55
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.30 E-value=0.0001 Score=67.14 Aligned_cols=179 Identities=21% Similarity=0.162 Sum_probs=115.5
Q ss_pred CCccccCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce--
Q 015886 125 RSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES-- 201 (398)
Q Consensus 125 ~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~-- 201 (398)
.....+++..++.+..|..|+..++.+... .....+.+|..|.+.++....-.- ..+. ...|++|+...+.- +.
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~-~~i~-m~~L~~ld~~~N~L-~tlP 199 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPE-NHIA-MKRLKHLDCNSNLL-ETLP 199 (565)
T ss_pred ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCH-HHHH-HHHHHhcccchhhh-hcCC
Confidence 456678899999999999999999877554 778889999999999998721111 1111 46778877644321 11
Q ss_pred eecCCCCCCceEEEecCCCcceee--ecccCceEEEEeeeeccceeEe-ecCCCCCceEEeeccCCchHHHhhhhcCCCC
Q 015886 202 LDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVN-VSSCGNLKCLKFDFLPIEDEWLCNGISKLPL 278 (398)
Q Consensus 202 ~~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (398)
-.+.++.+|..|.+..+ .+..++ -.|..|..|+.+.+........ ...++.+..|++..+++...... +..+.+
T Consensus 200 ~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde--~clLrs 276 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE--ICLLRS 276 (565)
T ss_pred hhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH--HHHhhh
Confidence 13444566666666655 222222 2566788888877763322222 35789999999998887652211 234688
Q ss_pred CcEEeccCcccccccccccc--ccceEecccccc
Q 015886 279 LEYLSMTKCHKLTSVRISSP--CLKTLILECCDK 310 (398)
Q Consensus 279 L~~L~l~~c~~~~~~~~~~~--~L~~L~l~~c~~ 310 (398)
|+.|++++. .+++++.... .|+.|.+.+.+.
T Consensus 277 L~rLDlSNN-~is~Lp~sLgnlhL~~L~leGNPl 309 (565)
T KOG0472|consen 277 LERLDLSNN-DISSLPYSLGNLHLKFLALEGNPL 309 (565)
T ss_pred hhhhcccCC-ccccCCcccccceeeehhhcCCch
Confidence 999999994 5555555433 566666666665
No 56
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.93 E-value=0.0052 Score=58.53 Aligned_cols=165 Identities=22% Similarity=0.229 Sum_probs=109.2
Q ss_pred CCeEEEEEecCCccccCCccccCCC-CeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886 115 EVKELVLVHWRSERRNLPEIIFYVE-SLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (398)
Q Consensus 115 ~l~~L~l~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 192 (398)
.+..+.+.. .....++......+ +|+.|+++++.+... .....+++|+.|+++++.+.+-. ......+.|+.|.
T Consensus 117 ~l~~L~l~~--n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~~~~L~~L~ 192 (394)
T COG4886 117 NLTSLDLDN--NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP--KLLSNLSNLNNLD 192 (394)
T ss_pred ceeEEecCC--cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhh--hhhhhhhhhhhee
Confidence 566666654 34456666666664 899999999988765 46788999999999999774322 2223679999999
Q ss_pred eeecCCcceeec--CCCCCCceEEEecCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHH
Q 015886 193 IRSCEGLESLDL--VNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEW 268 (398)
Q Consensus 193 l~~~~~~~~~~i--~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 268 (398)
++++.... +.. .....|+.|.+.+......+. -...++..+.+.+.........++.+++++.|+++++.+.+..
T Consensus 193 ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 193 LSGNKISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred ccCCcccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccc
Confidence 99874432 221 122458888888763222222 1445566666544442222345677888999999988876633
Q ss_pred HhhhhcCCCCCcEEeccCc
Q 015886 269 LCNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 269 ~~~~~~~~~~L~~L~l~~c 287 (398)
. +....+++.|++++.
T Consensus 272 ~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 272 S---LGSLTNLRELDLSGN 287 (394)
T ss_pred c---ccccCccCEEeccCc
Confidence 2 667789999999884
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.84 E-value=0.01 Score=49.39 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=9.5
Q ss_pred cccCceEEEEeeee
Q 015886 227 KTSNVNALAIHQTY 240 (398)
Q Consensus 227 ~~p~L~~l~l~~~~ 240 (398)
..|+|+.|++.+..
T Consensus 138 klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 138 KLPSLRTLDFQKVT 151 (233)
T ss_pred ecCcceEeehhhhh
Confidence 56777777776654
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.64 E-value=0.027 Score=47.01 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=53.2
Q ss_pred CeeEEEEeccccCCCCccccCcccceEEEEEEEeC--HHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEec
Q 015886 140 SLHVLELSYCKLQQPSENVKLFSLRKLALREVCAD--DQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVN 217 (398)
Q Consensus 140 ~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~ 217 (398)
+...++|+.+.+.....+..++.|.+|.|.+++++ +..+. ...|+|..|.+.++...+--
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~--------------- 104 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELG--------------- 104 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhh---------------
Confidence 34455666655544445556666777777666662 22232 23466666666654321100
Q ss_pred CCCcceeeecccCceEEEEeeeecc----ceeEeecCCCCCceEEeeccCCch
Q 015886 218 TSDIKRVEIKTSNVNALAIHQTYLF----PIEVNVSSCGNLKCLKFDFLPIED 266 (398)
Q Consensus 218 ~~~l~~~~~~~p~L~~l~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~ 266 (398)
.+..+ ..||.|++|.+-|++.. --...+-.+|+|+.|++......+
T Consensus 105 --dl~pL-a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 105 --DLDPL-ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKE 154 (233)
T ss_pred --hcchh-ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHH
Confidence 00001 13445555555444411 112345678889999887655433
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.64 E-value=0.0049 Score=54.95 Aligned_cols=37 Identities=35% Similarity=0.580 Sum_probs=34.7
Q ss_pred CCccCCCCC----HHHHHHHhccCChhHHHHHhhcccchhh
Q 015886 8 EVDGISTLP----EPILHHILSFLPFKEVAQTCLLSKRWKQ 44 (398)
Q Consensus 8 ~~D~i~~LP----deiL~~I~s~L~~~~~~~~~~vskrWr~ 44 (398)
..|.|..|| ++|...||+||+..++..|..|||+|+.
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r 111 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR 111 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 358899999 9999999999999999999999999985
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.58 E-value=0.0048 Score=38.19 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=11.9
Q ss_pred CeeEEEEeccccCCCCc-cccCcccceEEEEEE
Q 015886 140 SLHVLELSYCKLQQPSE-NVKLFSLRKLALREV 171 (398)
Q Consensus 140 ~L~~L~L~~~~l~~~~~-~~~~~~L~~L~L~~~ 171 (398)
+|++|+++++.+...+. ...+++|+.|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 34444444444432222 333444444444333
No 61
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.57 E-value=0.0041 Score=56.85 Aligned_cols=57 Identities=25% Similarity=0.186 Sum_probs=38.8
Q ss_pred CCeEEEEEecCCccccCCcccc-CCCCeeEEEEeccccCCC--CccccCcccceEEEEE-EEe
Q 015886 115 EVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQP--SENVKLFSLRKLALRE-VCA 173 (398)
Q Consensus 115 ~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~-~~~ 173 (398)
+..+++++. .....+|+..| ..++|++|+|+++.+... ..+.++++|.+|.+.+ +++
T Consensus 68 ~tveirLdq--N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 68 ETVEIRLDQ--NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred cceEEEecc--CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 455555554 34456777554 468899999998877543 5677788888887777 555
No 62
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.0029 Score=52.55 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=62.1
Q ss_pred cCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCcceee---
Q 015886 130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLD--- 203 (398)
Q Consensus 130 ~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~--- 203 (398)
.+|.....--.++.++-+++.+... ....+++.++.|.+.+|.. +|..+..+-...|+||.|+|++|+.++.-.
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence 3443333334567777777665544 5567788888888988887 888888887888999999999888775433
Q ss_pred cCCCCCCceEEEecC
Q 015886 204 LVNLSNLKEIILVNT 218 (398)
Q Consensus 204 i~~~~~L~~L~l~~~ 218 (398)
+..+++|+.|.+.+-
T Consensus 172 L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDL 186 (221)
T ss_pred HHHhhhhHHHHhcCc
Confidence 334577777777644
No 63
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.38 E-value=0.0081 Score=53.15 Aligned_cols=38 Identities=26% Similarity=0.506 Sum_probs=32.0
Q ss_pred cCCccCCCCCHHHHHHHhcc-----CChhHHHHHhhcccchhh
Q 015886 7 LEVDGISTLPEPILHHILSF-----LPFKEVAQTCLLSKRWKQ 44 (398)
Q Consensus 7 ~~~D~i~~LPdeiL~~I~s~-----L~~~~~~~~~~vskrWr~ 44 (398)
+..+.|..||||||..||.. ++.+++.+++.|||.|+.
T Consensus 102 p~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 102 PELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 34456789999999999964 557999999999999985
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.15 E-value=0.012 Score=36.37 Aligned_cols=34 Identities=35% Similarity=0.410 Sum_probs=23.4
Q ss_pred CCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886 252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (398)
++|++|+++++.+.+ +...+..+++|+.|+++++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 467888888877765 3444677888888888886
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.0023 Score=55.80 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=56.0
Q ss_pred CCCCeeEEEEeccccCCCCccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCc-------ceeecCCCC
Q 015886 137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGL-------ESLDLVNLS 208 (398)
Q Consensus 137 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~-------~~~~i~~~~ 208 (398)
..+.|+.|.|+-+.+........|.+|+.|+|..|.+ +-+.+.. +.+.|+|+.|+|..++-. ....++.+|
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 4567888888888777667778888999999988888 4444544 678899999999875432 233455578
Q ss_pred CCceEE
Q 015886 209 NLKEII 214 (398)
Q Consensus 209 ~L~~L~ 214 (398)
+|++|+
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 888885
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=0.011 Score=49.30 Aligned_cols=62 Identities=19% Similarity=0.159 Sum_probs=35.3
Q ss_pred cCCCCCceEEeeccC-CchHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEecccccc
Q 015886 249 SSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDK 310 (398)
Q Consensus 249 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~~ 310 (398)
..++.++.|.+.++. +.+..+..+-...|+|+.|+|++|+.+++.+. .+++|+.|.|.+=+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 344555555555444 34455555555566777777777766666555 455666665554443
No 67
>PLN03150 hypothetical protein; Provisional
Probab=94.67 E-value=0.038 Score=55.83 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=66.8
Q ss_pred CCceEEEecCCCcceee---ecccCceEEEEeeeec-cceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEec
Q 015886 209 NLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM 284 (398)
Q Consensus 209 ~L~~L~l~~~~~l~~~~---~~~p~L~~l~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 284 (398)
.++.|.+.++.--..+. ..+++|+.|+++++.. ......++.+++|+.|+|+++.+.... ...+..+++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEEC
Confidence 36777777762111121 2568899999988762 233345788999999999988877543 333667899999999
Q ss_pred cCcccccccccc----ccccceEeccccccc
Q 015886 285 TKCHKLTSVRIS----SPCLKTLILECCDKL 311 (398)
Q Consensus 285 ~~c~~~~~~~~~----~~~L~~L~l~~c~~~ 311 (398)
+++.....++.. ..++..+++.++..+
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccc
Confidence 987544444432 234556777665544
No 68
>PLN03150 hypothetical protein; Provisional
Probab=94.03 E-value=0.036 Score=55.98 Aligned_cols=78 Identities=19% Similarity=0.165 Sum_probs=58.8
Q ss_pred CeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEEE
Q 015886 140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIIL 215 (398)
Q Consensus 140 ~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l 215 (398)
.++.|+|.++.+... .....+++|+.|+|+++.+... +...+..++.|+.|++++|.....+ .+..+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 378899998877533 4566789999999999887432 2333678999999999998654333 3556799999999
Q ss_pred ecC
Q 015886 216 VNT 218 (398)
Q Consensus 216 ~~~ 218 (398)
.++
T Consensus 498 s~N 500 (623)
T PLN03150 498 NGN 500 (623)
T ss_pred cCC
Confidence 987
No 69
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.47 E-value=0.053 Score=50.28 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHhccCC-hhHHHHHhhcccchhhhhc
Q 015886 12 ISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQVWQ 47 (398)
Q Consensus 12 i~~LPdeiL~~I~s~L~-~~~~~~~~~vskrWr~lw~ 47 (398)
.++||+|+|..|..+|+ .-|++|.+.|||.||....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 67899999999999996 6799999999999998544
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.30 E-value=0.26 Score=43.23 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=90.7
Q ss_pred ccccCcccceEEEEEEEe---CHHHHHHHHhcCccccEEEeeecCCc----cee-----------ecCCCCCCceEEEec
Q 015886 156 ENVKLFSLRKLALREVCA---DDQAIASLISGCPLIEYLEIRSCEGL----ESL-----------DLVNLSNLKEIILVN 217 (398)
Q Consensus 156 ~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~~~~~----~~~-----------~i~~~~~L~~L~l~~ 217 (398)
....||.|++.+|+.+.| ..+.+..++++...|++|.+.+|..- ..+ .+.+-|.|+......
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 445677777888877777 33456677888888888888877321 001 112236777776655
Q ss_pred CCCcceee-------e-cccCceEEEEeeeeccce------eEeecCCCCCceEEeeccCCchH---HHhhhhcCCCCCc
Q 015886 218 TSDIKRVE-------I-KTSNVNALAIHQTYLFPI------EVNVSSCGNLKCLKFDFLPIEDE---WLCNGISKLPLLE 280 (398)
Q Consensus 218 ~~~l~~~~-------~-~~p~L~~l~l~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~ 280 (398)
+ .+...+ . .-.+|+.+.+..+...|. ...+..+.+|+.|+|..+.++.. .+...+..-++|+
T Consensus 167 N-Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 N-RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred c-hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 4 111111 1 113677777765553332 12245678999999998876653 3444456678899
Q ss_pred EEeccCccc----cccccc-----cccccceEeccccc
Q 015886 281 YLSMTKCHK----LTSVRI-----SSPCLKTLILECCD 309 (398)
Q Consensus 281 ~L~l~~c~~----~~~~~~-----~~~~L~~L~l~~c~ 309 (398)
.|.+..|-. ...+.. ..|+|..|...+..
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 999999822 222221 45677777655544
No 71
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=90.94 E-value=0.005 Score=60.69 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=60.7
Q ss_pred eeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCC--cceeecCCCCCCceEEEec
Q 015886 141 LHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEG--LESLDLVNLSNLKEIILVN 217 (398)
Q Consensus 141 L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~--~~~~~i~~~~~L~~L~l~~ 217 (398)
|...+.+.+++... ....-+|.|+.|+|++|++.+-. .+..||.|++|+|+++.- +..+...+|. |..|++.+
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 34444444444332 34445677788888887774332 245678888888877632 2233333333 66666666
Q ss_pred CCCcceee-e-cccCceEEEEeeeec--cceeEeecCCCCCceEEeeccCC
Q 015886 218 TSDIKRVE-I-KTSNVNALAIHQTYL--FPIEVNVSSCGNLKCLKFDFLPI 264 (398)
Q Consensus 218 ~~~l~~~~-~-~~p~L~~l~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~ 264 (398)
+ .++.+. + +..+|+.|+++.+.- -....-+..+..|+.|.|.||.+
T Consensus 242 N-~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 N-ALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred c-HHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5 222222 1 344566666654431 11111123455666666666543
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=89.77 E-value=0.073 Score=51.07 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=63.0
Q ss_pred ccCCCCeeEEEEeccccCCCCc-cccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCce
Q 015886 135 IFYVESLHVLELSYCKLQQPSE-NVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKE 212 (398)
Q Consensus 135 ~~~~~~L~~L~L~~~~l~~~~~-~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~ 212 (398)
+..+++|+.|++..+.+..... ...+++|+.|+++++.+ +-..+. .++.|+.|++.+|.....-....+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccCcchhccCCccchhhhc
Confidence 4456778888888887765544 66788888888888877 334433 34558888888775543333333567777
Q ss_pred EEEecCC--Cccee-eecccCceEEEEeeee
Q 015886 213 IILVNTS--DIKRV-EIKTSNVNALAIHQTY 240 (398)
Q Consensus 213 L~l~~~~--~l~~~-~~~~p~L~~l~l~~~~ 240 (398)
+.+.++. .+... .....+++.+.+.+..
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 7777761 11110 1344566666666554
No 73
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.60 E-value=0.2 Score=26.83 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=10.4
Q ss_pred CCCCcEEeccCccccccc
Q 015886 276 LPLLEYLSMTKCHKLTSV 293 (398)
Q Consensus 276 ~~~L~~L~l~~c~~~~~~ 293 (398)
||+|+.|+|++|..+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 456666666666555543
No 74
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=89.20 E-value=0.047 Score=52.35 Aligned_cols=124 Identities=22% Similarity=0.165 Sum_probs=79.4
Q ss_pred CCCeeEEEEeccccCCC-CccccCcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEE
Q 015886 138 VESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (398)
Q Consensus 138 ~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l 215 (398)
+..++.+.+..+.+... .....+.+|+.|++.++.+ .-.. .+..+++|+.|+++++....-..+..++.|+.|.+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~---~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN---LLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhccc---chhhhhcchheeccccccccccchhhccchhhhee
Confidence 44455555555555432 4467788999999988876 2222 25678999999999886554445555677888888
Q ss_pred ecCCCcceeee--cccCceEEEEeeeeccceeEe-ecCCCCCceEEeeccCCc
Q 015886 216 VNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVN-VSSCGNLKCLKFDFLPIE 265 (398)
Q Consensus 216 ~~~~~l~~~~~--~~p~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 265 (398)
.++ .+..+.- ..++|+.++++++........ ...+.+++.+.+.++.+.
T Consensus 148 ~~N-~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGN-LISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred ccC-cchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 887 2222322 266778888877763322221 367778888888766543
No 75
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=89.09 E-value=0.19 Score=49.55 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=36.5
Q ss_pred ccCCccCCCCCHHHHHHHhccCChhHHHHHhhcccchhhh
Q 015886 6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (398)
Q Consensus 6 ~~~~D~i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~l 45 (398)
....|.++.||.|+..+||++|+.++++++++||+.|+.+
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 3456899999999999999999999999999999999864
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.13 E-value=0.57 Score=22.21 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=4.4
Q ss_pred CCcEEeccCc
Q 015886 278 LLEYLSMTKC 287 (398)
Q Consensus 278 ~L~~L~l~~c 287 (398)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 4455555544
No 77
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=85.82 E-value=0.34 Score=30.95 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=23.1
Q ss_pred CcceEEEeccce---------eeccccccccceeee
Q 015886 320 NLSIFKYHGDLI---------SFSSNALSLSETSLC 346 (398)
Q Consensus 320 ~L~~l~~~~~~~---------~~~~~~~~L~~l~i~ 346 (398)
+|+.+++.|+.+ ++++|++.|++|.|.
T Consensus 15 ~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 15 HLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred eeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 678888887776 999999999999985
No 78
>PF13013 F-box-like_2: F-box-like domain
Probab=85.23 E-value=0.64 Score=34.99 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=26.8
Q ss_pred cCCCCCHHHHHHHhccCChhHHHHHhhccc
Q 015886 11 GISTLPEPILHHILSFLPFKEVAQTCLLSK 40 (398)
Q Consensus 11 ~i~~LPdeiL~~I~s~L~~~~~~~~~~vsk 40 (398)
.+.+||+||+..||.+-...+.......|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 378899999999999999999988887776
No 79
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=85.21 E-value=0.06 Score=51.88 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=75.4
Q ss_pred cCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeC--HHHHHHHHhcCccccEEEeeecCCccee-ecCC
Q 015886 130 NLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCAD--DQAIASLISGCPLIEYLEIRSCEGLESL-DLVN 206 (398)
Q Consensus 130 ~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~~~~~~~~-~i~~ 206 (398)
.+|..+.....|+.|+|+.+.+...+...++--|+.|.+++++.+ .+.+ ...+.|.+|+.+.|....-. .+..
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~i----g~~~tl~~ld~s~nei~slpsql~~ 187 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEI----GLLPTLAHLDVSKNEIQSLPSQLGY 187 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCccc----ccchhHHHhhhhhhhhhhchHHhhh
Confidence 455555666667777777776655544445555777777777651 1121 23456666666655332111 1223
Q ss_pred CCCCceEEEecCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCch
Q 015886 207 LSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (398)
Q Consensus 207 ~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (398)
+.+|+.|.+..+ .+..+. ...-.|..|+++.+......+.|..+..|+.|.|.++.+..
T Consensus 188 l~slr~l~vrRn-~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 188 LTSLRDLNVRRN-HLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHHHHHhhh-hhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 455666665554 222222 12334777888777755566777788888888887776554
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.86 E-value=0.73 Score=23.96 Aligned_cols=22 Identities=27% Similarity=0.126 Sum_probs=13.1
Q ss_pred CCCCceEEeeccCCchHHHhhh
Q 015886 251 CGNLKCLKFDFLPIEDEWLCNG 272 (398)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~ 272 (398)
+++|++|+|+++.++++....+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3677788887777777665543
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=84.74 E-value=0.67 Score=35.93 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=4.7
Q ss_pred hcCccccEEEee
Q 015886 183 SGCPLIEYLEIR 194 (398)
Q Consensus 183 ~~cp~Le~L~l~ 194 (398)
..|+.|+.+.+.
T Consensus 9 ~~~~~l~~i~~~ 20 (129)
T PF13306_consen 9 YNCSNLESITFP 20 (129)
T ss_dssp TT-TT--EEEET
T ss_pred hCCCCCCEEEEC
Confidence 445555555554
No 82
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=83.91 E-value=0.24 Score=38.93 Aligned_cols=83 Identities=14% Similarity=0.040 Sum_probs=51.1
Q ss_pred CeEEEEEecCCc-cccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886 116 VKELVLVHWRSE-RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (398)
Q Consensus 116 l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 192 (398)
+..++++.|... -...+..+.....|+..+|+++.+... .....+|.++.|+|.++.+++--.. +...|.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcc
Confidence 344444443221 223344455556677778888877654 3345577888888888877443322 56678888888
Q ss_pred eeecCCcc
Q 015886 193 IRSCEGLE 200 (398)
Q Consensus 193 l~~~~~~~ 200 (398)
++.+....
T Consensus 107 l~~N~l~~ 114 (177)
T KOG4579|consen 107 LRFNPLNA 114 (177)
T ss_pred cccCcccc
Confidence 88776543
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=83.46 E-value=0.8 Score=23.31 Aligned_cols=9 Identities=44% Similarity=0.789 Sum_probs=4.6
Q ss_pred CcEEeccCc
Q 015886 279 LEYLSMTKC 287 (398)
Q Consensus 279 L~~L~l~~c 287 (398)
|+.|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 455555554
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=80.28 E-value=2 Score=33.14 Aligned_cols=8 Identities=50% Similarity=0.700 Sum_probs=2.6
Q ss_pred CCCceEEE
Q 015886 208 SNLKEIIL 215 (398)
Q Consensus 208 ~~L~~L~l 215 (398)
++|+.+.+
T Consensus 12 ~~l~~i~~ 19 (129)
T PF13306_consen 12 SNLESITF 19 (129)
T ss_dssp TT--EEEE
T ss_pred CCCCEEEE
Confidence 34444444
No 85
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=72.15 E-value=4 Score=28.02 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=26.2
Q ss_pred CCcceEEEeccce---------eeccccccccceeeeeccc
Q 015886 319 PNLSIFKYHGDLI---------SFSSNALSLSETSLCFSSH 350 (398)
Q Consensus 319 p~L~~l~~~~~~~---------~~~~~~~~L~~l~i~~~~~ 350 (398)
++|+.+++.++.+ ++++|++.|+++.|.....
T Consensus 5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~ 45 (72)
T smart00579 5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETS 45 (72)
T ss_pred heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecC
Confidence 3577888888776 8999999999999977653
No 86
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=71.33 E-value=0.1 Score=50.45 Aligned_cols=176 Identities=16% Similarity=0.086 Sum_probs=100.4
Q ss_pred CccccCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCc-ceee
Q 015886 126 SERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGL-ESLD 203 (398)
Q Consensus 126 ~~~~~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~-~~~~ 203 (398)
....++|..+..+..|+.+.|+.+.+..- .....+..|+.|+|+.+..+.-.. -+..| -|+.|-+.++... -...
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~--~lC~l-pLkvli~sNNkl~~lp~~ 161 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPD--GLCDL-PLKVLIVSNNKLTSLPEE 161 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCCh--hhhcC-cceeEEEecCccccCCcc
Confidence 34456676666677777777777555332 556677888888888876521111 12223 3677777765432 1223
Q ss_pred cCCCCCCceEEEecCCCcceee---ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCc
Q 015886 204 LVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLE 280 (398)
Q Consensus 204 i~~~~~L~~L~l~~~~~l~~~~---~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 280 (398)
+...++|..|+++.| .+..+. .....|+.|.+..+......-.+. .-.|..|+++++++..- ..-+.++..|+
T Consensus 162 ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~i--Pv~fr~m~~Lq 237 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYL--PVDFRKMRHLQ 237 (722)
T ss_pred cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeec--chhhhhhhhhe
Confidence 344578888888877 333332 244556666666555222222233 23577888888887552 22245678888
Q ss_pred EEeccCccccccccc------cccccceEeccccc
Q 015886 281 YLSMTKCHKLTSVRI------SSPCLKTLILECCD 309 (398)
Q Consensus 281 ~L~l~~c~~~~~~~~------~~~~L~~L~l~~c~ 309 (398)
.|.|.+.+. .+-+. .-.-.|+|++.-|.
T Consensus 238 ~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 238 VLQLENNPL-QSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeeccCCC-CCChHHHHhccceeeeeeecchhcc
Confidence 888888432 11111 12345777777773
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.87 E-value=5.6 Score=21.58 Aligned_cols=22 Identities=18% Similarity=0.013 Sum_probs=16.6
Q ss_pred CCCceEEeeccCCchHHHhhhh
Q 015886 252 GNLKCLKFDFLPIEDEWLCNGI 273 (398)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~ 273 (398)
++|+.|+|+++.+.++....+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5788899998888887665543
No 88
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=62.38 E-value=3.8 Score=35.90 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=36.4
Q ss_pred CccCCCCCHHHHHHHhccCC-hhHHHHHhhcccch------hhhhcccceeeec
Q 015886 9 VDGISTLPEPILHHILSFLP-FKEVAQTCLLSKRW------KQVWQTFPDVEVG 55 (398)
Q Consensus 9 ~D~i~~LPdeiL~~I~s~L~-~~~~~~~~~vskrW------r~lw~~~~~l~~~ 55 (398)
.-.+.+||.|++..|+-+++ -+|+..++.|-..- +.+|+.+..++|.
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~ 252 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFN 252 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44689999999999999999 57777777664333 3578888777776
No 89
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=60.96 E-value=6.7 Score=28.86 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.3
Q ss_pred ccCCCCCHHHHHHHhccCChhHHHH
Q 015886 10 DGISTLPEPILHHILSFLPFKEVAQ 34 (398)
Q Consensus 10 D~i~~LPdeiL~~I~s~L~~~~~~~ 34 (398)
..++.||.|+-.+|+++|+.+|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5688999999999999999998754
No 90
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=58.26 E-value=16 Score=31.19 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=23.2
Q ss_pred cccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCC
Q 015886 157 NVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEG 198 (398)
Q Consensus 157 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~ 198 (398)
..+|.+|+.-++++..++-..+...-.-|.++|--.|..|..
T Consensus 167 NL~ca~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcNf 208 (302)
T KOG1665|consen 167 NLQCAKLERADLEGSILHCAILREVEMLCANAEGASLKGCNF 208 (302)
T ss_pred chhhhhhcccccccchhhhhhhhhhhheecccccccccCcCC
Confidence 344556666666665554444544444556666666655544
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.47 E-value=8.9 Score=37.43 Aligned_cols=67 Identities=13% Similarity=0.128 Sum_probs=39.6
Q ss_pred CcceeeecccCceEEEEeeee-ccceeEeec--CCCCCceEEeeccCCch------HHHhhhhcCCCCCcEEeccC
Q 015886 220 DIKRVEIKTSNVNALAIHQTY-LFPIEVNVS--SCGNLKCLKFDFLPIED------EWLCNGISKLPLLEYLSMTK 286 (398)
Q Consensus 220 ~l~~~~~~~p~L~~l~l~~~~-~~~~~~~~~--~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~L~~L~l~~ 286 (398)
.+..+...+|+|..|+++++. .......+. ....|++|-+.|+.+.. +-+..+-..||+|..|+=..
T Consensus 235 ~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG~e 310 (585)
T KOG3763|consen 235 ALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDGVE 310 (585)
T ss_pred hhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeecCcc
Confidence 344455577888888887763 000111122 23467788888776543 33445566788888886554
No 92
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=46.84 E-value=2.2 Score=33.66 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=14.5
Q ss_pred CCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccC
Q 015886 251 CGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (398)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (398)
+|.++.|++..+.+.+.... +...|.|+.|+++.
T Consensus 76 f~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 76 FPTATTLNLANNEISDVPEE--LAAMPALRSLNLRF 109 (177)
T ss_pred cchhhhhhcchhhhhhchHH--HhhhHHhhhccccc
Confidence 33445555544444332111 33344444444444
No 93
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=46.03 E-value=0.38 Score=46.75 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=38.1
Q ss_pred cccCCCCeeEEEEeccccCCC------CccccC-cccceEEEEEEEeCHHH---HHHHHhcCccccEEEeeecCCc
Q 015886 134 IIFYVESLHVLELSYCKLQQP------SENVKL-FSLRKLALREVCADDQA---IASLISGCPLIEYLEIRSCEGL 199 (398)
Q Consensus 134 ~~~~~~~L~~L~L~~~~l~~~------~~~~~~-~~L~~L~L~~~~~~~~~---l~~l~~~cp~Le~L~l~~~~~~ 199 (398)
.+....+|..|+++++.+... ...... ..|++|.+..|..+.+. +...+..++.++.+++..|...
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 344557777778877766544 111121 45666777777664333 3333445777777777776543
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.33 E-value=8.7 Score=37.47 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=17.1
Q ss_pred CcccceEEEEEEEe-CHHHHHHHHhcCccccEEEeeec
Q 015886 160 LFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSC 196 (398)
Q Consensus 160 ~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~ 196 (398)
+|.+..++|++|+. +-+.+..+....|.|..|+|+++
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44444444444444 33444444444455555554444
No 95
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=36.79 E-value=26 Score=18.26 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=6.0
Q ss_pred CCCceEEeeccCC
Q 015886 252 GNLKCLKFDFLPI 264 (398)
Q Consensus 252 ~~L~~L~l~~~~~ 264 (398)
++|+.|+++++.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00370 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 3445555544443
No 96
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=36.79 E-value=26 Score=18.26 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=6.0
Q ss_pred CCCceEEeeccCC
Q 015886 252 GNLKCLKFDFLPI 264 (398)
Q Consensus 252 ~~L~~L~l~~~~~ 264 (398)
++|+.|+++++.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00369 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 3445555544443
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=25.69 E-value=54 Score=17.49 Aligned_cols=13 Identities=31% Similarity=0.250 Sum_probs=7.3
Q ss_pred CCCceEEeeccCC
Q 015886 252 GNLKCLKFDFLPI 264 (398)
Q Consensus 252 ~~L~~L~l~~~~~ 264 (398)
.+|+.|+++.+.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4556666665554
No 98
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.48 E-value=22 Score=25.19 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=25.4
Q ss_pred CCHHHHHHHhccCChhHHHHHhhcc--cchhhhhcccc
Q 015886 15 LPEPILHHILSFLPFKEVAQTCLLS--KRWKQVWQTFP 50 (398)
Q Consensus 15 LPdeiL~~I~s~L~~~~~~~~~~vs--krWr~lw~~~~ 50 (398)
+||+.=.....++..++.+++..+- -.|+++||...
T Consensus 11 ~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR~~G 48 (98)
T COG4829 11 VPDSMDADAVERVRAREKARSRELQAQGKLLRLWRRPG 48 (98)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhccc
Confidence 5666556666777788888887664 35899998643
No 99
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=23.33 E-value=96 Score=23.30 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=28.5
Q ss_pred ccCCCCCHHHHHHHhccCChhHHHHHhhcccch
Q 015886 10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRW 42 (398)
Q Consensus 10 D~i~~LPdeiL~~I~s~L~~~~~~~~~~vskrW 42 (398)
+.+..+|.+++..|+...++.++.+...-|..-
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l 34 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL 34 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc
Confidence 457889999999999999999999998877544
No 100
>PRK09718 hypothetical protein; Validated
Probab=20.37 E-value=1e+02 Score=29.91 Aligned_cols=10 Identities=10% Similarity=0.139 Sum_probs=4.2
Q ss_pred CCceEEEecC
Q 015886 209 NLKEIILVNT 218 (398)
Q Consensus 209 ~L~~L~l~~~ 218 (398)
+|+...+.+|
T Consensus 166 ~Lk~V~FsdC 175 (512)
T PRK09718 166 ILDTVDFSQS 175 (512)
T ss_pred ccCCcEEeee
Confidence 3444444444
Done!