Query 015886
Match_columns 398
No_of_seqs 242 out of 2766
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 04:14:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015886.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015886hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.9 1.6E-24 5.5E-29 215.7 10.5 178 9-196 3-221 (594)
2 3ogk_B Coronatine-insensitive 99.9 2.1E-24 7.3E-29 214.8 10.7 329 7-348 4-446 (592)
3 2ast_B S-phase kinase-associat 99.9 1.9E-23 6.4E-28 193.2 12.7 252 9-308 6-282 (336)
4 4fcg_A Uncharacterized protein 99.7 6.6E-16 2.3E-20 141.9 14.0 195 111-311 78-290 (328)
5 4fmz_A Internalin; leucine ric 99.6 7.9E-15 2.7E-19 135.8 13.3 117 228-349 198-322 (347)
6 4fcg_A Uncharacterized protein 99.6 6.6E-15 2.2E-19 135.2 11.6 206 138-348 80-311 (328)
7 4fmz_A Internalin; leucine ric 99.5 1.7E-14 5.8E-19 133.6 11.3 205 135-348 84-297 (347)
8 3t6q_A CD180 antigen; protein- 99.5 2.2E-14 7.5E-19 143.0 7.8 213 115-331 279-512 (606)
9 3rgz_A Protein brassinosteroid 99.5 1.8E-14 6.2E-19 147.4 7.4 233 114-350 100-355 (768)
10 3ogk_B Coronatine-insensitive 99.5 2.6E-15 9E-20 149.2 0.4 192 159-350 291-525 (592)
11 1o6v_A Internalin A; bacterial 99.5 3E-13 1E-17 130.4 14.7 74 114-193 90-163 (466)
12 1ogq_A PGIP-2, polygalacturona 99.5 1.5E-13 5E-18 125.4 11.5 233 114-349 50-302 (313)
13 2z66_A Variable lymphocyte rec 99.5 6.3E-14 2.1E-18 127.4 9.0 233 127-362 18-273 (306)
14 3rgz_A Protein brassinosteroid 99.5 3E-14 1E-18 145.8 7.4 220 129-349 90-329 (768)
15 1o6v_A Internalin A; bacterial 99.5 3.2E-13 1.1E-17 130.1 14.2 98 114-218 134-231 (466)
16 3vq2_A TLR4, TOLL-like recepto 99.5 3.8E-14 1.3E-18 141.3 7.8 208 136-349 282-532 (606)
17 3v47_A TOLL-like receptor 5B a 99.5 1.2E-13 4E-18 132.7 10.9 120 229-350 275-407 (455)
18 3t6q_A CD180 antigen; protein- 99.5 8.5E-14 2.9E-18 138.7 9.4 235 115-353 255-515 (606)
19 2ast_B S-phase kinase-associat 99.5 3.5E-15 1.2E-19 137.5 -1.4 193 114-309 93-304 (336)
20 3vq2_A TLR4, TOLL-like recepto 99.5 9.5E-14 3.2E-18 138.4 8.8 223 137-359 326-567 (606)
21 3o53_A Protein LRIM1, AGAP0063 99.5 1E-13 3.4E-18 126.8 8.1 206 115-351 35-250 (317)
22 2id5_A Lingo-1, leucine rich r 99.4 1.2E-13 4.2E-18 133.5 8.1 219 137-359 102-342 (477)
23 2id5_A Lingo-1, leucine rich r 99.4 1.5E-13 5.1E-18 132.9 8.6 233 114-351 56-309 (477)
24 2p1m_B Transport inhibitor res 99.4 2.2E-13 7.6E-18 135.3 10.0 97 250-346 287-405 (594)
25 3bz5_A Internalin-J, INLJ; leu 99.4 5.3E-13 1.8E-17 128.0 11.9 219 114-349 64-297 (457)
26 2z80_A TOLL-like receptor 2, v 99.4 6.9E-13 2.4E-17 123.0 12.0 232 114-350 52-313 (353)
27 3bz5_A Internalin-J, INLJ; leu 99.4 6.1E-13 2.1E-17 127.6 11.9 240 83-349 64-329 (457)
28 2z63_A TOLL-like receptor 4, v 99.4 7.9E-13 2.7E-17 130.6 12.8 227 114-349 282-529 (570)
29 3o6n_A APL1; leucine-rich repe 99.4 9.7E-13 3.3E-17 123.8 12.5 230 114-350 93-351 (390)
30 3oja_B Anopheles plasmodium-re 99.4 3.1E-13 1.1E-17 134.3 9.4 100 248-349 250-356 (597)
31 3g06_A SSPH2 (leucine-rich rep 99.4 2.9E-12 9.8E-17 127.0 15.7 217 114-352 61-298 (622)
32 2z63_A TOLL-like receptor 4, v 99.4 5.1E-13 1.7E-17 132.0 10.4 230 115-350 258-506 (570)
33 3oja_A Leucine-rich immune mol 99.4 3.4E-13 1.1E-17 130.5 8.8 204 140-350 35-249 (487)
34 3zyj_A Leucine-rich repeat-con 99.4 1.1E-12 3.8E-17 125.4 12.2 216 139-360 64-302 (440)
35 3o6n_A APL1; leucine-rich repe 99.4 1.5E-12 5E-17 122.5 12.6 231 113-350 68-330 (390)
36 3v47_A TOLL-like receptor 5B a 99.4 2.5E-13 8.6E-18 130.4 7.3 236 114-351 54-384 (455)
37 3zyi_A Leucine-rich repeat-con 99.4 1E-12 3.4E-17 126.2 11.4 217 139-361 75-314 (452)
38 3zyi_A Leucine-rich repeat-con 99.4 6.2E-13 2.1E-17 127.6 9.3 212 114-331 75-302 (452)
39 1xku_A Decorin; proteoglycan, 99.4 1.7E-12 5.8E-17 119.2 11.6 226 114-345 76-326 (330)
40 1z7x_W Ribonuclease inhibitor; 99.4 9.5E-14 3.2E-18 133.6 3.1 247 115-363 86-395 (461)
41 3zyj_A Leucine-rich repeat-con 99.4 7.2E-13 2.5E-17 126.7 9.2 212 114-331 64-291 (440)
42 1ogq_A PGIP-2, polygalacturona 99.4 3.3E-13 1.1E-17 123.1 6.2 215 113-330 75-302 (313)
43 1h6u_A Internalin H; cell adhe 99.4 2E-12 6.7E-17 117.6 11.3 186 113-310 40-229 (308)
44 4eco_A Uncharacterized protein 99.4 1.6E-12 5.3E-17 130.2 10.9 151 114-265 206-390 (636)
45 2z7x_B TOLL-like receptor 1, v 99.4 1.5E-11 5.1E-16 120.1 16.9 140 210-350 304-480 (520)
46 2z66_A Variable lymphocyte rec 99.3 1E-13 3.5E-18 126.0 0.8 211 114-331 28-260 (306)
47 1z7x_W Ribonuclease inhibitor; 99.3 6.5E-14 2.2E-18 134.7 -0.9 252 111-364 25-339 (461)
48 3o53_A Protein LRIM1, AGAP0063 99.3 6.5E-13 2.2E-17 121.3 5.8 222 64-311 19-250 (317)
49 1ozn_A Reticulon 4 receptor; N 99.3 1.4E-12 4.7E-17 117.2 7.8 176 129-310 24-213 (285)
50 1h6u_A Internalin H; cell adhe 99.3 3.4E-12 1.2E-16 116.0 9.5 184 139-331 41-229 (308)
51 4ecn_A Leucine-rich repeat pro 99.3 4.6E-12 1.6E-16 129.8 11.0 150 114-265 448-632 (876)
52 2ca6_A RAN GTPase-activating p 99.3 4.9E-13 1.7E-17 125.6 3.4 197 114-311 32-287 (386)
53 3oja_B Anopheles plasmodium-re 99.3 3.9E-12 1.3E-16 126.4 9.8 102 227-331 252-357 (597)
54 3oja_A Leucine-rich immune mol 99.3 1.6E-12 5.3E-17 125.9 6.7 218 115-345 35-269 (487)
55 3j0a_A TOLL-like receptor 5; m 99.3 6.1E-12 2.1E-16 130.0 10.6 96 252-349 266-373 (844)
56 2z81_A CD282 antigen, TOLL-lik 99.3 4.7E-12 1.6E-16 124.5 8.8 82 114-198 74-160 (549)
57 2z81_A CD282 antigen, TOLL-lik 99.3 8.1E-12 2.8E-16 122.8 10.2 124 115-240 27-159 (549)
58 1wwl_A Monocyte differentiatio 99.3 5.3E-13 1.8E-17 121.6 1.5 196 137-349 93-307 (312)
59 2z7x_B TOLL-like receptor 1, v 99.3 1.1E-10 3.9E-15 113.9 18.1 144 183-331 321-480 (520)
60 4ecn_A Leucine-rich repeat pro 99.3 4.4E-12 1.5E-16 130.0 8.1 229 114-350 548-839 (876)
61 2ft3_A Biglycan; proteoglycan, 99.3 3E-12 1E-16 117.7 6.2 226 114-346 78-328 (332)
62 1xku_A Decorin; proteoglycan, 99.3 6.8E-12 2.3E-16 115.2 8.5 226 114-349 52-304 (330)
63 3goz_A Leucine-rich repeat-con 99.3 7.5E-12 2.6E-16 116.4 8.4 226 138-365 21-311 (362)
64 1jl5_A Outer protein YOPM; leu 99.3 4.1E-11 1.4E-15 114.8 13.7 119 139-264 131-249 (454)
65 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.4E-11 4.7E-16 121.6 10.3 76 114-197 100-180 (562)
66 3j0a_A TOLL-like receptor 5; m 99.3 2.6E-11 8.8E-16 125.3 12.4 118 229-348 266-391 (844)
67 1ozn_A Reticulon 4 receptor; N 99.3 3.9E-12 1.3E-16 114.3 5.5 192 114-311 32-238 (285)
68 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 8.8E-11 3E-15 115.8 15.1 123 227-349 351-508 (562)
69 4eco_A Uncharacterized protein 99.2 3.4E-12 1.2E-16 127.7 4.9 226 114-349 305-598 (636)
70 1ziw_A TOLL-like receptor 3; i 99.2 9.7E-12 3.3E-16 125.5 8.1 167 183-352 402-598 (680)
71 1h6t_A Internalin B; cell adhe 99.2 1.3E-11 4.4E-16 111.2 7.9 163 114-287 46-210 (291)
72 1ziw_A TOLL-like receptor 3; i 99.2 2.8E-11 9.5E-16 122.2 9.7 53 297-349 479-547 (680)
73 1m9s_A Internalin B; cell inva 99.2 1.9E-11 6.4E-16 120.9 8.0 165 113-288 42-208 (605)
74 4glp_A Monocyte differentiatio 99.2 5.8E-12 2E-16 114.6 3.5 217 115-348 65-304 (310)
75 2z80_A TOLL-like receptor 2, v 99.2 1.4E-11 4.8E-16 114.2 5.8 212 114-328 76-310 (353)
76 1wwl_A Monocyte differentiatio 99.2 3.3E-12 1.1E-16 116.3 1.5 206 139-350 43-286 (312)
77 2xwt_C Thyrotropin receptor; s 99.2 3.6E-11 1.2E-15 105.0 8.1 166 140-309 32-216 (239)
78 2z62_A TOLL-like receptor 4, v 99.2 2.5E-11 8.7E-16 108.4 6.3 136 128-266 19-163 (276)
79 3g06_A SSPH2 (leucine-rich rep 99.2 3.1E-10 1.1E-14 112.5 14.6 197 113-331 80-296 (622)
80 2o6q_A Variable lymphocyte rec 99.2 5.6E-11 1.9E-15 105.8 8.4 79 139-218 37-119 (270)
81 4glp_A Monocyte differentiatio 99.2 2.8E-11 9.5E-16 110.1 6.5 202 100-309 77-305 (310)
82 4ezg_A Putative uncharacterize 99.2 3.9E-11 1.3E-15 101.5 7.0 146 114-287 44-191 (197)
83 2ca6_A RAN GTPase-activating p 99.2 1.3E-11 4.4E-16 115.9 4.2 197 114-311 60-316 (386)
84 3rfs_A Internalin B, repeat mo 99.2 4.1E-11 1.4E-15 106.8 7.0 39 135-173 59-97 (272)
85 3rfs_A Internalin B, repeat mo 99.1 1.1E-11 3.8E-16 110.5 3.3 182 137-328 39-231 (272)
86 2xwt_C Thyrotropin receptor; s 99.1 8.7E-11 3E-15 102.5 8.9 192 114-310 31-238 (239)
87 2ft3_A Biglycan; proteoglycan, 99.1 3.9E-11 1.3E-15 110.2 6.7 226 114-349 54-305 (332)
88 4ezg_A Putative uncharacterize 99.1 2.8E-10 9.5E-15 96.2 11.4 146 158-328 41-190 (197)
89 1jl5_A Outer protein YOPM; leu 99.1 3.2E-10 1.1E-14 108.6 12.8 76 114-197 131-206 (454)
90 1p9a_G Platelet glycoprotein I 99.1 8.2E-11 2.8E-15 105.8 8.0 168 137-309 8-183 (290)
91 2z62_A TOLL-like receptor 4, v 99.1 1.5E-10 5E-15 103.4 7.2 187 161-350 28-236 (276)
92 1h6t_A Internalin B; cell adhe 99.1 2.4E-10 8.2E-15 102.9 8.1 166 137-311 44-213 (291)
93 1m9s_A Internalin B; cell inva 99.0 1.4E-10 4.7E-15 114.8 6.0 164 138-310 42-209 (605)
94 2o6q_A Variable lymphocyte rec 99.0 3.5E-10 1.2E-14 100.6 6.6 168 114-286 37-214 (270)
95 1p9a_G Platelet glycoprotein I 99.0 5E-10 1.7E-14 100.7 6.2 186 115-310 11-207 (290)
96 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 4.1E-10 1.4E-14 72.9 3.5 40 8-47 5-44 (53)
97 3goz_A Leucine-rich repeat-con 98.9 2.9E-10 1E-14 105.6 3.1 204 144-349 3-264 (362)
98 4ay9_X Follicle-stimulating ho 98.9 2.5E-09 8.6E-14 98.8 8.7 211 114-328 30-255 (350)
99 1xeu_A Internalin C; cellular 98.9 1.2E-09 4.1E-14 96.7 6.1 142 137-287 39-182 (263)
100 3m19_A Variable lymphocyte rec 98.9 1.4E-09 4.9E-14 95.5 6.0 88 128-218 26-117 (251)
101 1xeu_A Internalin C; cellular 98.9 3.7E-10 1.3E-14 100.0 1.7 164 139-311 19-185 (263)
102 3cvr_A Invasion plasmid antige 98.9 3.8E-09 1.3E-13 103.4 8.4 176 113-311 58-243 (571)
103 4g8a_A TOLL-like receptor 4; l 98.8 7.6E-09 2.6E-13 103.2 10.1 203 158-361 368-591 (635)
104 2ell_A Acidic leucine-rich nuc 98.8 8.7E-10 3E-14 90.5 2.6 127 139-287 24-157 (168)
105 3m19_A Variable lymphocyte rec 98.8 2.1E-09 7.2E-14 94.4 5.0 145 139-287 14-165 (251)
106 4ay9_X Follicle-stimulating ho 98.8 1.3E-08 4.6E-13 93.9 10.0 213 127-345 20-253 (350)
107 2je0_A Acidic leucine-rich nuc 98.8 5.9E-10 2E-14 89.6 -0.8 37 251-287 87-123 (149)
108 2o6s_A Variable lymphocyte rec 98.7 4.5E-09 1.5E-13 89.5 4.1 87 129-218 20-110 (208)
109 2ell_A Acidic leucine-rich nuc 98.7 7.6E-09 2.6E-13 84.8 4.8 104 114-218 24-130 (168)
110 3cvr_A Invasion plasmid antige 98.7 3E-08 1E-12 97.1 9.3 175 139-331 59-242 (571)
111 3e4g_A ATP synthase subunit S, 98.7 2.6E-08 9E-13 81.2 6.2 97 128-224 50-155 (176)
112 2ra8_A Uncharacterized protein 98.7 2.2E-08 7.6E-13 92.4 6.1 132 177-310 163-319 (362)
113 2je0_A Acidic leucine-rich nuc 98.6 7.9E-09 2.7E-13 82.9 2.4 104 114-218 17-123 (149)
114 2o6s_A Variable lymphocyte rec 98.6 1.3E-08 4.6E-13 86.5 3.0 158 143-309 11-176 (208)
115 2ra8_A Uncharacterized protein 98.5 2.7E-07 9.1E-12 85.2 9.6 156 113-287 138-317 (362)
116 3e4g_A ATP synthase subunit S, 98.5 5.5E-08 1.9E-12 79.3 4.2 83 230-312 62-153 (176)
117 1a9n_A U2A', U2A'; complex (nu 98.5 3.7E-08 1.3E-12 81.4 3.1 38 136-173 16-54 (176)
118 3e6j_A Variable lymphocyte rec 98.5 8.8E-08 3E-12 82.7 5.3 135 127-287 30-169 (229)
119 4g8a_A TOLL-like receptor 4; l 98.5 4.5E-07 1.6E-11 90.2 11.2 128 227-355 418-559 (635)
120 1ds9_A Outer arm dynein; leuci 98.5 1.3E-08 4.6E-13 85.8 -0.6 145 116-283 25-180 (198)
121 2v70_A SLIT-2, SLIT homolog 2 98.4 7.6E-08 2.6E-12 82.6 3.4 56 140-196 33-91 (220)
122 3un9_A NLR family member X1; l 98.4 1.2E-08 4E-13 94.9 -2.1 39 249-287 208-249 (372)
123 2v9t_B SLIT homolog 2 protein 98.4 1.4E-07 4.7E-12 81.0 4.6 135 127-286 22-161 (220)
124 2xot_A Amphoterin-induced prot 98.4 1.7E-07 5.8E-12 86.9 5.3 153 128-286 30-198 (361)
125 3e6j_A Variable lymphocyte rec 98.4 1.5E-07 5.1E-12 81.3 4.5 143 142-311 22-172 (229)
126 1a9n_A U2A', U2A'; complex (nu 98.4 5.3E-07 1.8E-11 74.3 6.8 39 249-287 85-123 (176)
127 2v70_A SLIT-2, SLIT homolog 2 98.3 2.6E-07 8.8E-12 79.2 4.2 143 142-287 14-163 (220)
128 2v9t_B SLIT homolog 2 protein 98.3 2.3E-07 7.8E-12 79.6 3.8 144 143-311 15-165 (220)
129 3sb4_A Hypothetical leucine ri 98.3 3.7E-06 1.3E-10 76.7 11.7 91 251-344 225-327 (329)
130 2xot_A Amphoterin-induced prot 98.3 3.8E-07 1.3E-11 84.5 4.6 163 142-310 21-201 (361)
131 1ds9_A Outer arm dynein; leuci 98.3 6.7E-08 2.3E-12 81.5 -0.9 61 227-288 91-151 (198)
132 3un9_A NLR family member X1; l 98.3 1.6E-07 5.6E-12 87.2 1.6 156 139-311 72-252 (372)
133 1dce_A Protein (RAB geranylger 98.1 1.5E-06 5.1E-11 85.3 3.8 98 162-264 442-545 (567)
134 2e31_A FBS1, F-box only protei 98.1 1.7E-06 5.8E-11 76.3 3.5 36 10-45 49-85 (297)
135 3l2o_B F-box only protein 4; s 98.0 8.4E-07 2.9E-11 77.3 0.8 34 11-44 4-37 (312)
136 3sb4_A Hypothetical leucine ri 98.0 1.4E-05 4.6E-10 72.9 8.7 206 138-349 24-308 (329)
137 4fdw_A Leucine rich hypothetic 98.0 1E-05 3.5E-10 75.8 7.1 204 130-345 148-377 (401)
138 4b8c_D Glucose-repressible alc 98.0 2.9E-06 9.8E-11 85.9 3.0 108 155-266 218-330 (727)
139 1dce_A Protein (RAB geranylger 97.9 1.5E-05 5.2E-10 78.2 6.6 185 136-325 346-566 (567)
140 1w8a_A SLIT protein; signaling 97.8 9.2E-06 3.2E-10 67.8 3.9 114 128-265 20-139 (192)
141 1w8a_A SLIT protein; signaling 97.8 5.7E-06 1.9E-10 69.1 2.1 123 142-287 11-136 (192)
142 3v7d_B Cell division control p 97.8 4.6E-06 1.6E-10 79.5 1.5 40 8-47 11-50 (464)
143 2o6r_A Variable lymphocyte rec 97.8 1.8E-05 6.2E-10 65.0 4.8 106 139-266 28-138 (177)
144 2wfh_A SLIT homolog 2 protein 97.8 1.8E-05 6.1E-10 66.1 4.6 105 139-265 31-139 (193)
145 2o6r_A Variable lymphocyte rec 97.7 1.7E-05 5.8E-10 65.1 3.6 125 142-288 10-135 (177)
146 4b8c_D Glucose-repressible alc 97.7 1.2E-05 4.2E-10 81.3 3.2 143 139-289 173-328 (727)
147 2wfh_A SLIT homolog 2 protein 97.7 2.2E-05 7.4E-10 65.6 4.3 102 114-218 31-136 (193)
148 2ovr_B FBW7, F-BOX/WD repeat p 97.6 3.3E-05 1.1E-09 73.2 3.8 38 7-44 14-51 (445)
149 1p22_A F-BOX/WD-repeat protein 97.5 1.6E-05 5.5E-10 75.2 0.8 37 8-44 7-47 (435)
150 1io0_A Tropomodulin; LRR prote 97.5 4.4E-05 1.5E-09 63.3 2.4 39 249-287 118-161 (185)
151 3g39_A Variable lymphocyte rec 97.4 0.00013 4.4E-09 59.5 4.2 67 128-197 21-89 (170)
152 2r9u_A Variable lymphocyte rec 97.3 0.00017 5.9E-09 59.0 4.4 65 129-196 25-91 (174)
153 4fdw_A Leucine rich hypothetic 97.3 0.00058 2E-08 63.8 8.0 198 114-328 157-379 (401)
154 4fs7_A Uncharacterized protein 97.2 0.00032 1.1E-08 65.5 5.3 113 227-345 251-373 (394)
155 1io0_A Tropomodulin; LRR prote 97.1 0.0008 2.8E-08 55.5 6.6 19 332-350 145-163 (185)
156 3g39_A Variable lymphocyte rec 97.1 0.00059 2E-08 55.4 5.0 39 248-287 50-88 (170)
157 2r9u_A Variable lymphocyte rec 97.0 0.00086 2.9E-08 54.7 5.4 58 229-287 33-91 (174)
158 2ifg_A High affinity nerve gro 96.2 0.0025 8.7E-08 58.1 3.3 88 127-218 20-113 (347)
159 4fs7_A Uncharacterized protein 96.0 0.0076 2.6E-07 56.0 5.7 198 135-344 158-394 (394)
160 4gt6_A Cell surface protein; l 95.9 0.032 1.1E-06 51.7 9.3 95 248-346 261-365 (394)
161 3rw6_A Nuclear RNA export fact 95.4 0.0039 1.3E-07 54.4 1.1 79 114-192 170-257 (267)
162 3rw6_A Nuclear RNA export fact 95.4 0.0077 2.6E-07 52.6 2.9 33 253-285 221-259 (267)
163 4gt6_A Cell surface protein; l 95.3 0.11 3.7E-06 48.1 10.9 117 227-347 263-387 (394)
164 2ifg_A High affinity nerve gro 94.5 0.034 1.2E-06 50.4 4.7 73 144-218 13-90 (347)
165 4h09_A Hypothetical leucine ri 92.3 1.3 4.3E-05 40.4 11.7 70 274-345 260-340 (379)
166 4h09_A Hypothetical leucine ri 92.0 0.36 1.2E-05 44.2 7.5 75 249-326 260-340 (379)
167 1pgv_A TMD-1, tropomodulin TMD 89.9 0.35 1.2E-05 39.8 4.6 36 252-287 98-136 (197)
168 1pgv_A TMD-1, tropomodulin TMD 88.1 0.083 2.8E-06 43.6 -0.4 96 101-196 26-136 (197)
169 3rfe_A Platelet glycoprotein I 71.3 3.1 0.0001 31.4 3.3 42 130-173 24-67 (130)
170 3rfe_A Platelet glycoprotein I 42.8 12 0.00042 28.0 2.2 33 253-286 32-64 (130)
171 2kwv_A RAD30 homolog B, DNA po 26.7 46 0.0016 19.6 2.2 17 10-26 19-35 (48)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.6e-24 Score=215.75 Aligned_cols=178 Identities=17% Similarity=0.224 Sum_probs=99.8
Q ss_pred CccCCCCCHHHHHHHhccCC-hhHHHHHhhcccchhhhhcc-cceeeecCcCCCC-------------------------
Q 015886 9 VDGISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQVWQT-FPDVEVGGMFTNP------------------------- 61 (398)
Q Consensus 9 ~D~i~~LPdeiL~~I~s~L~-~~~~~~~~~vskrWr~lw~~-~~~l~~~~~~~~~------------------------- 61 (398)
.|+++.|||||+.+||+||+ .+|+++++.|||||+++... ...+.+...+...
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 82 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF 82 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhc
Confidence 58999999999999999999 99999999999999977211 1222332110000
Q ss_pred -----chhhHHHHHHHHHHhccccCCCCceEEEEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEec-CCccccCCccc
Q 015886 62 -----RKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHW-RSERRNLPEII 135 (398)
Q Consensus 62 -----~~~~~~~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~-~~~~~~l~~~~ 135 (398)
.....+...+.... .....++.+.++.... ....... +. ...+++++|++..+ ......++...
T Consensus 83 ~l~~~~~~~~~~~~l~~l~----~~~~~L~~L~L~~~~~----~~~~~~~-l~-~~~~~L~~L~L~~~~~~~~~~l~~~~ 152 (594)
T 2p1m_B 83 NLVPDGWGGYVYPWIEAMS----SSYTWLEEIRLKRMVV----TDDCLEL-IA-KSFKNFKVLVLSSCEGFSTDGLAAIA 152 (594)
T ss_dssp TCSCTTSCCBCHHHHHHHH----HHCTTCCEEEEESCBC----CHHHHHH-HH-HHCTTCCEEEEESCEEEEHHHHHHHH
T ss_pred ccccccccchhhHHHHHHH----HhCCCCCeEEeeCcEE----cHHHHHH-HH-HhCCCCcEEeCCCcCCCCHHHHHHHH
Confidence 00000011111111 1123555555553211 1111111 10 02357777777764 22222344444
Q ss_pred cCCCCeeEEEEeccccCCC------CccccCcccceEEEEEEE--eCHHHHHHHHhcCccccEEEeeec
Q 015886 136 FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVC--ADDQAIASLISGCPLIEYLEIRSC 196 (398)
Q Consensus 136 ~~~~~L~~L~L~~~~l~~~------~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~~ 196 (398)
..+++|++|++++|.+... .....+++|+.|+++++. +++..+..++..||+|+.|++.+|
T Consensus 153 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 5678888888888775432 223367789999998885 577888888888999999999877
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=2.1e-24 Score=214.85 Aligned_cols=329 Identities=13% Similarity=0.117 Sum_probs=173.4
Q ss_pred cCCccCC----CCCHHHHHHHhccC-ChhHHHHHhhcccchhhhhcccce-eeecCcCCCCchhhHH-------------
Q 015886 7 LEVDGIS----TLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFPD-VEVGGMFTNPRKSKEI------------- 67 (398)
Q Consensus 7 ~~~D~i~----~LPdeiL~~I~s~L-~~~~~~~~~~vskrWr~lw~~~~~-l~~~~~~~~~~~~~~~------------- 67 (398)
++.|+++ .||||++.+||+|| +.+|++++++|||||++++...+. +.+...+... ...+
T Consensus 4 ~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~L~~L~L~ 81 (592)
T 3ogk_B 4 PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTAT--PDRLSRRFPNLRSLKLK 81 (592)
T ss_dssp --------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSC--HHHHHHHCTTCSEEEEE
T ss_pred hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccC--hHHHHHhCCCCeEEEec
Confidence 4456666 89999999999999 899999999999999987543322 2222111110 0000
Q ss_pred -------------------HHHHHHHHhccccCCCCceEEEEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEecC-Cc
Q 015886 68 -------------------LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR-SE 127 (398)
Q Consensus 68 -------------------~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~-~~ 127 (398)
...+.... .....++.+.++.. ......-.|+......++++|++..+. ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~L~~L~L~~~-----~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 82 GKPRAAMFNLIPENWGGYVTPWVTEIS----NNLRQLKSVHFRRM-----IVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp CSCGGGGGTCSCTTSCCBCHHHHHHHH----HHCTTCCEEEEESC-----BCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCcchhhcccccccccccchHHHHHHH----hhCCCCCeEEeecc-----EecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 00011110 01234445444422 112222333333333347777666533 12
Q ss_pred cccCCccccCCCCeeEEEEeccccCCC------CccccCcccceEEEEEEEeC---HHHHHHHHhcCccccEEEeeecCC
Q 015886 128 RRNLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCAD---DQAIASLISGCPLIEYLEIRSCEG 198 (398)
Q Consensus 128 ~~~l~~~~~~~~~L~~L~L~~~~l~~~------~~~~~~~~L~~L~L~~~~~~---~~~l~~l~~~cp~Le~L~l~~~~~ 198 (398)
...++.....+++|++|+|++|.+... .....+++|+.|+++++.++ +..+..++..||+|+.|++.+|..
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 222333334567777777777765322 12345677777777776663 566777777788888888877642
Q ss_pred cc------------eee----------------cCCCCCCceEEEecC--CCcceeeecccCceEEEEeeeecc--ceeE
Q 015886 199 LE------------SLD----------------LVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLF--PIEV 246 (398)
Q Consensus 199 ~~------------~~~----------------i~~~~~L~~L~l~~~--~~l~~~~~~~p~L~~l~l~~~~~~--~~~~ 246 (398)
.. .+. +..+++|+.|.+.++ ..+..+...+++|++|+++++... ....
T Consensus 233 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~ 312 (592)
T 3ogk_B 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312 (592)
T ss_dssp GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence 21 000 111233444444333 112222224566677776665511 1111
Q ss_pred eecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccC----------cccccccc-----ccccccceEeccccccc
Q 015886 247 NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK----------CHKLTSVR-----ISSPCLKTLILECCDKL 311 (398)
Q Consensus 247 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~----------c~~~~~~~-----~~~~~L~~L~l~~c~~~ 311 (398)
.+..+++|++|++. +.+.+..+..+...+++|+.|++.+ |..++... ..+++|++|++ .|..+
T Consensus 313 ~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l 390 (592)
T 3ogk_B 313 LIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDI 390 (592)
T ss_dssp HHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCC
T ss_pred HHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCc
Confidence 23566777777776 4455555666666677777777774 54444322 24667777777 34443
Q ss_pred e-----eccccCCCcceEEEeccc---e-----------eeccccccccceeeeec
Q 015886 312 I-----QVEIETPNLSIFKYHGDL---I-----------SFSSNALSLSETSLCFS 348 (398)
Q Consensus 312 ~-----~~~~~~p~L~~l~~~~~~---~-----------~~~~~~~~L~~l~i~~~ 348 (398)
. .+...+|+|+.|.+.+.. . .++.++++|+++.++.+
T Consensus 391 ~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 2 122346777777776422 1 22455777888887543
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.9e-23 Score=193.20 Aligned_cols=252 Identities=19% Similarity=0.217 Sum_probs=138.0
Q ss_pred CccCCCCCHHHHHHHhccCChhHHHHHhhcccchhhhhcc---cceeeecCcCCCCchhhHHHHHHHHHHhccccCCCCc
Q 015886 9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT---FPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISI 85 (398)
Q Consensus 9 ~D~i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l 85 (398)
...++.||+|++.+||+||+.+|+++++.|||+|+++... ...+++...-
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~--------------------------- 58 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKN--------------------------- 58 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCB---------------------------
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeecccccc---------------------------
Confidence 4568999999999999999999999999999999987532 1112222000
Q ss_pred eEEEEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC---CccccCcc
Q 015886 86 KKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFS 162 (398)
Q Consensus 86 ~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~ 162 (398)
.. ...+.....++++.+++.... ....+..++.+++|++|++++|.+... .....+++
T Consensus 59 -------------~~----~~~~~~~~~~~l~~L~l~~n~--l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 59 -------------LH----PDVTGRLLSQGVIAFRCPRSF--MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp -------------CC----HHHHHHHHHTTCSEEECTTCE--ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred -------------CC----HHHHHhhhhccceEEEcCCcc--ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 00 112223334566666655421 122233355667777777777765421 33456677
Q ss_pred cceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce--e--ecCCCCCCceEEEecCCCccee-----eeccc-Cce
Q 015886 163 LRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--L--DLVNLSNLKEIILVNTSDIKRV-----EIKTS-NVN 232 (398)
Q Consensus 163 L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~--~i~~~~~L~~L~l~~~~~l~~~-----~~~~p-~L~ 232 (398)
|++|+|+++.+++..... +..+|+|++|++.+|..+.. + .+..+++|++|++.+|..+... ...+| +|+
T Consensus 120 L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 777777777666555443 45577777777777644432 1 1233566666666666333221 12445 566
Q ss_pred EEEEeeeec----cceeEeecCCCCCceEEeeccC-CchHHHhhhhcCCCCCcEEeccCccccccc----cccccccceE
Q 015886 233 ALAIHQTYL----FPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLTSV----RISSPCLKTL 303 (398)
Q Consensus 233 ~l~l~~~~~----~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~----~~~~~~L~~L 303 (398)
+|+++++.. ......+..+++|++|+++++. +++..+.. +..+++|+.|++++|..+... ...+++|++|
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 666655520 1111123445555555555555 33333332 344555555555555433222 1134555555
Q ss_pred ecccc
Q 015886 304 ILECC 308 (398)
Q Consensus 304 ~l~~c 308 (398)
++++|
T Consensus 278 ~l~~~ 282 (336)
T 2ast_B 278 QVFGI 282 (336)
T ss_dssp ECTTS
T ss_pred eccCc
Confidence 55555
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.66 E-value=6.6e-16 Score=141.89 Aligned_cols=195 Identities=20% Similarity=0.231 Sum_probs=122.2
Q ss_pred HHhCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCcccc
Q 015886 111 AIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (398)
Q Consensus 111 ~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 189 (398)
....++++|+++.+.. ..+|..++.+++|++|+++++.+... .....+++|++|+|+++.+. .+..-+..+++|+
T Consensus 78 ~~~~~l~~L~L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 78 ATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR 153 (328)
T ss_dssp HTSTTCCEEEEESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC
T ss_pred ccccceeEEEccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC
Confidence 3346899999987443 37888888899999999999988633 45678999999999999875 2333467889999
Q ss_pred EEEeeecCCcceeec-----------CCCCCCceEEEecCCCcceee---ecccCceEEEEeeeeccceeEeecCCCCCc
Q 015886 190 YLEIRSCEGLESLDL-----------VNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLK 255 (398)
Q Consensus 190 ~L~l~~~~~~~~~~i-----------~~~~~L~~L~l~~~~~l~~~~---~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~ 255 (398)
.|++++|.....+.. ..+++|+.|++.+| .+..++ ..+++|++|+++++........+..+++|+
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCC
Confidence 999999866543321 12566777776666 222222 245566666666555222222345566666
Q ss_pred eEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccc
Q 015886 256 CLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKL 311 (398)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~ 311 (398)
.|+++++.+.... ...+..+++|+.|++++|.....++. .+++|++|+|++|...
T Consensus 233 ~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 233 ELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp EEECTTCTTCCBC-CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred EEECcCCcchhhh-HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 6666655443321 22244556666666666544444443 3455666666665554
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.59 E-value=7.9e-15 Score=135.79 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=54.3
Q ss_pred ccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc--ccccccceEec
Q 015886 228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--ISSPCLKTLIL 305 (398)
Q Consensus 228 ~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~L~~L~l 305 (398)
.++|+.++++++...... .+..+++|++|+++++.+..... +..+++|+.|++++|. ++.+. ..+++|++|++
T Consensus 198 l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNV 272 (347)
T ss_dssp CTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEEC
T ss_pred CCccceeecccCCCCCCc-hhhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEc
Confidence 344555555444311110 14455555555555555443211 4455556666555542 22221 13455666666
Q ss_pred cccccce-eccccCCCcceEEEeccce-----eeccccccccceeeeecc
Q 015886 306 ECCDKLI-QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS 349 (398)
Q Consensus 306 ~~c~~~~-~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~ 349 (398)
++|.... .....+++|+.|.+.++.. ..+.++++|++++++.+.
T Consensus 273 ~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 273 GSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred cCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 5553321 2234455566665555544 334445556666654443
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.58 E-value=6.6e-15 Score=135.23 Aligned_cols=206 Identities=20% Similarity=0.243 Sum_probs=159.9
Q ss_pred CCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEE
Q 015886 138 VESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII 214 (398)
Q Consensus 138 ~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~ 214 (398)
..+++.|+++++.+... .....+++|++|+|+++.+. .+...+..+++|+.|++++|... .+ .+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 47899999999988644 55667999999999999875 23333578899999999998544 22 355679999999
Q ss_pred EecCCCcceeee------------cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEE
Q 015886 215 LVNTSDIKRVEI------------KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (398)
Q Consensus 215 l~~~~~l~~~~~------------~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 282 (398)
+.+|.....++. .+++|+.|+++++........++.+++|++|+++++.+.. +...+..+++|+.|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEE
Confidence 999854444432 3889999999998744444457889999999999998774 23346789999999
Q ss_pred eccCccccccccc---cccccceEeccccccceec---cccCCCcceEEEeccce-----eeccccccccceeeeec
Q 015886 283 SMTKCHKLTSVRI---SSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS 348 (398)
Q Consensus 283 ~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~~~---~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~ 348 (398)
++++|.....++. .+++|++|++++|.....+ ...+++|+.|.++++.. ..+.+.++|+.+.+..+
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9999876666654 5789999999999887433 46788999999999765 66777888888877433
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.55 E-value=1.7e-14 Score=133.57 Aligned_cols=205 Identities=18% Similarity=0.163 Sum_probs=82.0
Q ss_pred ccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee-ecCCCCCCceE
Q 015886 135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DLVNLSNLKEI 213 (398)
Q Consensus 135 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~-~i~~~~~L~~L 213 (398)
+..+++|++|++++|.+...+....+++|++|+++++.+.+-.. +..+++|+.|++.+|.....+ .+..+++|+.|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L 160 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence 33444555555555444433334444555555554444421110 334455555555444333221 12333444555
Q ss_pred EEecCCCccee--eecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccc
Q 015886 214 ILVNTSDIKRV--EIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291 (398)
Q Consensus 214 ~l~~~~~l~~~--~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 291 (398)
.+.+|. +..+ ...+++|++|+++++...... .+..+++|+.|+++++.+.+... +..+++|+.|++++|. ++
T Consensus 161 ~l~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~-l~ 234 (347)
T 4fmz_A 161 TVTESK-VKDVTPIANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNK-IT 234 (347)
T ss_dssp ECCSSC-CCCCGGGGGCTTCSEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSC-CC
T ss_pred EecCCC-cCCchhhccCCCCCEEEccCCcccccc-cccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCc-cC
Confidence 444441 1111 113444444444444311110 13444444455444444333111 3344445555554432 11
Q ss_pred cc--cccccccceEeccccccce-eccccCCCcceEEEeccce---eeccccccccceeeeec
Q 015886 292 SV--RISSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI---SFSSNALSLSETSLCFS 348 (398)
Q Consensus 292 ~~--~~~~~~L~~L~l~~c~~~~-~~~~~~p~L~~l~~~~~~~---~~~~~~~~L~~l~i~~~ 348 (398)
.+ ...+++|++|++++|.... .....+++|+.|.+.++.. ..+...++|++++++.+
T Consensus 235 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 235 DLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred CCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCC
Confidence 11 1133444444444443221 1123344444444444443 22334444444444443
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.50 E-value=2.2e-14 Score=142.96 Aligned_cols=213 Identities=17% Similarity=0.127 Sum_probs=99.6
Q ss_pred CCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (398)
Q Consensus 115 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 192 (398)
++++|+++.+. ...+|..+..+++|++|+++++.+... .....+++|+.|+++++.+........+..+++|+.|+
T Consensus 279 ~L~~L~l~~n~--l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 279 GLQELDLTATH--LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TCSEEECTTSC--CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred CCCEEeccCCc--cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 55555555432 224555555566666666666654432 23445566666666655432111111234556666666
Q ss_pred eeecCCccee----ecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccc--eeEeecCCCCCceEEeecc
Q 015886 193 IRSCEGLESL----DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFL 262 (398)
Q Consensus 193 l~~~~~~~~~----~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~ 262 (398)
+++|...... .+..+++|+.|++.+|. +..+. ..+++|++|+++++.... ....+..+++|+.|+++++
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 6655432211 23345666666666552 22221 134566666665554111 0112445556666666655
Q ss_pred CCchHHHhhhhcCCCCCcEEeccCccccc------cccccccccceEeccccccce---eccccCCCcceEEEeccce
Q 015886 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLT------SVRISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI 331 (398)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~------~~~~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~ 331 (398)
.+.... ...+..+++|+.|+++++.-.. .....+++|++|++++|.... .....+++|+.|.++++..
T Consensus 436 ~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 436 LLDISS-EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp CCBTTC-TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ccCCcC-HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 543321 2223445566666665543211 011134555555555554321 1123344555555554443
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.50 E-value=1.8e-14 Score=147.36 Aligned_cols=233 Identities=18% Similarity=0.129 Sum_probs=146.1
Q ss_pred CCCeEEEEEecCCccccCCc--cccCCCCeeEEEEeccccCCC---CccccCcccceEEEEEEEeCHHHHH--HHHhcCc
Q 015886 114 SEVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIA--SLISGCP 186 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~~~~~l~--~l~~~cp 186 (398)
++++.|+++.+.. ...+|. .+..+++|++|++++|.+... .....+++|++|+|+++.++..... ..+..++
T Consensus 100 ~~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 100 ASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TTCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 4677777765321 223444 566777788888877766433 1225677888888877776322221 2356778
Q ss_pred cccEEEeeecCCcceeecCCCCCCceEEEecCCCccee--eecccCceEEEEeeeecc-ceeEeecCCCCCceEEeeccC
Q 015886 187 LIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRV--EIKTSNVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLP 263 (398)
Q Consensus 187 ~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~--~~~~p~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 263 (398)
+|++|++.+|..........+++|+.|++.+|.....+ ...+++|++|+++++... .....+..+++|+.|+++++.
T Consensus 179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258 (768)
T ss_dssp TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC
T ss_pred CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc
Confidence 88888887775444444456678888888777221111 225677888888777622 222345677888888887776
Q ss_pred CchHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEeccccccce---eccccCCCcceEEEeccce-----
Q 015886 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI----- 331 (398)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~----- 331 (398)
+...... ..+++|+.|++++|.....++. .+++|++|++++|.... .....+++|+.|.+.++..
T Consensus 259 l~~~~~~---~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip 335 (768)
T 3rgz_A 259 FVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335 (768)
T ss_dssp CEESCCC---CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred ccCccCc---cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCC
Confidence 6542111 1577888888888643323332 24788888888887542 3346677888888887765
Q ss_pred -eeccccccccceeeeeccc
Q 015886 332 -SFSSNALSLSETSLCFSSH 350 (398)
Q Consensus 332 -~~~~~~~~L~~l~i~~~~~ 350 (398)
..+.+.++|++++++.+..
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEE
T ss_pred HHHHhcCCCCCEEeCcCCcc
Confidence 2366788888888866643
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=2.6e-15 Score=149.16 Aligned_cols=192 Identities=17% Similarity=0.118 Sum_probs=96.0
Q ss_pred cCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee--cCCCCCCceEEEec----------CCCccee--
Q 015886 159 KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD--LVNLSNLKEIILVN----------TSDIKRV-- 224 (398)
Q Consensus 159 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~--i~~~~~L~~L~l~~----------~~~l~~~-- 224 (398)
.+++|++|+|++|.+++..+..++..||+|+.|++.++.....+. ...+++|++|++.+ |..+...
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 345666666666655555555555666666666665321111110 12245666666663 4222211
Q ss_pred ---eecccCceEEEEeeee-ccceeEeec-CCCCCceEEee----ccCCch----HHHhhhhcCCCCCcEEeccCccc-c
Q 015886 225 ---EIKTSNVNALAIHQTY-LFPIEVNVS-SCGNLKCLKFD----FLPIED----EWLCNGISKLPLLEYLSMTKCHK-L 290 (398)
Q Consensus 225 ---~~~~p~L~~l~l~~~~-~~~~~~~~~-~~~~L~~L~l~----~~~~~~----~~~~~~~~~~~~L~~L~l~~c~~-~ 290 (398)
...+|+|++|++.... .......++ .+++|++|++. .+.+++ ..+..++..+++|+.|+++.|.+ +
T Consensus 371 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence 1235666666663332 111111122 25666666664 233333 24445555566666666655432 1
Q ss_pred c-----cccccccccceEeccccccce----eccccCCCcceEEEeccce------eeccccccccceeeeeccc
Q 015886 291 T-----SVRISSPCLKTLILECCDKLI----QVEIETPNLSIFKYHGDLI------SFSSNALSLSETSLCFSSH 350 (398)
Q Consensus 291 ~-----~~~~~~~~L~~L~l~~c~~~~----~~~~~~p~L~~l~~~~~~~------~~~~~~~~L~~l~i~~~~~ 350 (398)
+ .+...+++|++|++++|.... .+...+++|+.|+++++.. .+...+++|+.+.++.+..
T Consensus 451 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp CHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred cHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 1 122235666666666665321 2234556677777766653 3344566677777755543
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.49 E-value=3e-13 Score=130.40 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=44.3
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
+++++|+++.+.. ..++. +..+++|++|++++|.+...+....+++|+.|+++++.+.+-. . +..+++|+.|.+
T Consensus 90 ~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l 163 (466)
T 1o6v_A 90 TKLVDILMNNNQI--ADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS--A-LSGLTSLQQLSF 163 (466)
T ss_dssp TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG--G-GTTCTTCSEEEE
T ss_pred ccCCEEECCCCcc--ccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh--h-hccCCcccEeec
Confidence 4777777765322 23333 5667778888887776665544667777888888777763211 1 344444444444
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.48 E-value=1.5e-13 Score=125.39 Aligned_cols=233 Identities=14% Similarity=0.048 Sum_probs=145.5
Q ss_pred CCCeEEEEEecCCc-cccCCccccCCCCeeEEEEec-cccCC--CCccccCcccceEEEEEEEeCHHHHHHHHhcCcccc
Q 015886 114 SEVKELVLVHWRSE-RRNLPEIIFYVESLHVLELSY-CKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (398)
Q Consensus 114 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~-~~l~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 189 (398)
.++++|+++.+... ...+|..+..+++|++|++++ +.+.. +.....+++|++|+|+++.++... ...+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC-CHHHhCCCCCC
Confidence 36777777764322 125677777788888888884 55432 245667888888888888763111 12256678888
Q ss_pred EEEeeecCCccee--ecCCCCCCceEEEecCCCcceee---eccc-CceEEEEeeeecc-ceeEeecCCCCCceEEeecc
Q 015886 190 YLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTS-NVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFL 262 (398)
Q Consensus 190 ~L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~---~~~p-~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~ 262 (398)
.|++++|.....+ .+..+++|+.|++.++.-...++ ...+ +|+.|+++++... .....+..++ |+.|+++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 8888877543221 24456888888888773221222 1334 7888888877622 2222345555 888888877
Q ss_pred CCchHHHhhhhcCCCCCcEEeccCcccccccc--ccccccceEeccccccce---eccccCCCcceEEEeccce----ee
Q 015886 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI----SF 333 (398)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~----~~ 333 (398)
.+... ....+..+++|+.|+++++.....++ ..+++|++|+++++.... .....+++|+.|.++++.. ..
T Consensus 208 ~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 76543 23445678888888888864322222 245788888888877642 2345667888888877766 22
Q ss_pred ccccccccceeeeecc
Q 015886 334 SSNALSLSETSLCFSS 349 (398)
Q Consensus 334 ~~~~~~L~~l~i~~~~ 349 (398)
..+.++|+.+.+..+.
T Consensus 287 ~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 287 GGNLQRFDVSAYANNK 302 (313)
T ss_dssp STTGGGSCGGGTCSSS
T ss_pred CccccccChHHhcCCC
Confidence 2456677777775544
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.48 E-value=6.3e-14 Score=127.39 Aligned_cols=233 Identities=18% Similarity=0.174 Sum_probs=150.2
Q ss_pred ccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHH-HHHHHhcCccccEEEeeecCCcce-e
Q 015886 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQA-IASLISGCPLIEYLEIRSCEGLES-L 202 (398)
Q Consensus 127 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~-l~~l~~~cp~Le~L~l~~~~~~~~-~ 202 (398)
....+|..+. ++|++|+++++.+... ..+..+++|+.|+|+++.++... ....+..+++|+.|++++|....- -
T Consensus 18 ~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~ 95 (306)
T 2z66_A 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 95 (306)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE
T ss_pred CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChh
Confidence 3445555432 5788899988877644 23567889999999888764221 111234678999999988754321 1
Q ss_pred ecCCCCCCceEEEecC--CCcce--eeecccCceEEEEeeeecc-ceeEeecCCCCCceEEeeccCCchHHHhhhhcCCC
Q 015886 203 DLVNLSNLKEIILVNT--SDIKR--VEIKTSNVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLP 277 (398)
Q Consensus 203 ~i~~~~~L~~L~l~~~--~~l~~--~~~~~p~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (398)
.+..+++|++|++.++ ..... .....++|++|+++++... .....+..+++|+.|+++++.+........+..++
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 2445788999988887 11111 1235678899998877621 11123567889999999888776544455567788
Q ss_pred CCcEEeccCccccccc-c---ccccccceEeccccccce---eccccCCCcceEEEeccce-----eecccc-cccccee
Q 015886 278 LLEYLSMTKCHKLTSV-R---ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNA-LSLSETS 344 (398)
Q Consensus 278 ~L~~L~l~~c~~~~~~-~---~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~~~~~~-~~L~~l~ 344 (398)
+|+.|+++++. ++.+ + ..+++|++|+++++.... .....+++|+.|.++++.. ..+... ++|+.++
T Consensus 176 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 176 NLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred CCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 99999998873 3333 2 256789999998887542 2335578899999888776 334445 4899999
Q ss_pred eeecccc-hhhHHHHHHHH
Q 015886 345 LCFSSHL-MVNIEWVVEYF 362 (398)
Q Consensus 345 i~~~~~~-~~~~~~~~~~~ 362 (398)
++.+... .....|+.+..
T Consensus 255 L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 255 LTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp CTTCCEECSGGGHHHHHHH
T ss_pred ccCCCeecccChHHHHHHH
Confidence 9766432 22344444433
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.48 E-value=3e-14 Score=145.80 Aligned_cols=220 Identities=15% Similarity=0.072 Sum_probs=141.7
Q ss_pred ccCCccccCCCCeeEEEEeccccCC--CC--ccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee-
Q 015886 129 RNLPEIIFYVESLHVLELSYCKLQQ--PS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD- 203 (398)
Q Consensus 129 ~~l~~~~~~~~~L~~L~L~~~~l~~--~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~- 203 (398)
..+|..+..+++|++|+|++|.+.. +. ....+++|++|+|+++.+.......++..+++|++|++++|.......
T Consensus 90 ~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 169 (768)
T 3rgz_A 90 NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169 (768)
T ss_dssp EECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH
T ss_pred CCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh
Confidence 3456677778888888888877642 22 566778888888887776322222223567888888888775432221
Q ss_pred ----cCCCCCCceEEEecCCCcceee-ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCC
Q 015886 204 ----LVNLSNLKEIILVNTSDIKRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPL 278 (398)
Q Consensus 204 ----i~~~~~L~~L~l~~~~~l~~~~-~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (398)
+..+++|++|++.+|....... ..+++|++|+++++........++.+++|++|+++++.+.... ...+..+++
T Consensus 170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~ 248 (768)
T 3rgz_A 170 GWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTE 248 (768)
T ss_dssp HHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCH-HHHTTTCSS
T ss_pred hhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcc-cHHHhcCCC
Confidence 4556788888888772111111 3567888888887763222223677888888888887776543 333567888
Q ss_pred CcEEeccCccccccccc-cccccceEeccccccceec----cccCCCcceEEEeccce-----eeccccccccceeeeec
Q 015886 279 LEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS 348 (398)
Q Consensus 279 L~~L~l~~c~~~~~~~~-~~~~L~~L~l~~c~~~~~~----~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~ 348 (398)
|+.|++++|.....++. .+++|++|++++|.....+ ...+++|+.|.+.++.. ..+.++++|+++++..+
T Consensus 249 L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328 (768)
T ss_dssp CCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC
Confidence 88888888743333222 5678888888887654222 22347888888877765 45667788888888665
Q ss_pred c
Q 015886 349 S 349 (398)
Q Consensus 349 ~ 349 (398)
.
T Consensus 329 ~ 329 (768)
T 3rgz_A 329 N 329 (768)
T ss_dssp E
T ss_pred c
Confidence 4
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=3.2e-13 Score=130.14 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=45.5
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
+++++|+++.+... .++ .+..+++|++|++.+. +........+++|+.|+++++.+.+-. .+..+++|+.|++
T Consensus 134 ~~L~~L~l~~n~l~--~~~-~~~~l~~L~~L~l~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l 206 (466)
T 1o6v_A 134 TNLNRLELSSNTIS--DIS-ALSGLTSLQQLSFGNQ-VTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIA 206 (466)
T ss_dssp TTCSEEEEEEEEEC--CCG-GGTTCTTCSEEEEEES-CCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEEC
T ss_pred CCCCEEECCCCccC--CCh-hhccCCcccEeecCCc-ccCchhhccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEe
Confidence 57888888774322 122 2444555555555432 221223445555555555555542211 1344555555555
Q ss_pred eecCCcceeecCCCCCCceEEEecC
Q 015886 194 RSCEGLESLDLVNLSNLKEIILVNT 218 (398)
Q Consensus 194 ~~~~~~~~~~i~~~~~L~~L~l~~~ 218 (398)
.+|.......+..+++|+.|.+.+|
T Consensus 207 ~~n~l~~~~~~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 207 TNNQISDITPLGILTNLDELSLNGN 231 (466)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCCcccccccccccCCCCEEECCCC
Confidence 5543322222233344555555444
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.48 E-value=3.8e-14 Score=141.25 Aligned_cols=208 Identities=16% Similarity=0.169 Sum_probs=103.7
Q ss_pred cCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEE
Q 015886 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (398)
Q Consensus 136 ~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l 215 (398)
..+++|+.|++.++.+...+....+++|++|++++|.++ .+..+ .++.|+.|++.+|.......+..+++|+.|++
T Consensus 282 ~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 357 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDL 357 (606)
T ss_dssp GGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEEC
T ss_pred ccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEEC
Confidence 334556666666655543344445556666666665551 11121 55566666666554444444444455555555
Q ss_pred ecCCCccee---e---ecccCceEEEEeeeeccceeEe-------------------------ecCCCCCceEEeeccCC
Q 015886 216 VNTSDIKRV---E---IKTSNVNALAIHQTYLFPIEVN-------------------------VSSCGNLKCLKFDFLPI 264 (398)
Q Consensus 216 ~~~~~l~~~---~---~~~p~L~~l~l~~~~~~~~~~~-------------------------~~~~~~L~~L~l~~~~~ 264 (398)
++| .+..+ . ..+++|++|+++++........ +..+++|+.|+++++.+
T Consensus 358 s~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 358 SRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred cCC-ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 554 11111 0 1334455555444431111122 34455555555555544
Q ss_pred chHHHhhhhcCCCCCcEEeccCcccccc-cc---ccccccceEeccccccce---eccccCCCcceEEEeccce-----e
Q 015886 265 EDEWLCNGISKLPLLEYLSMTKCHKLTS-VR---ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----S 332 (398)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~-~~---~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~ 332 (398)
.... ...+..+++|+.|++++|..... ++ ..+++|+.|++++|.... .....+++|+.|.++++.. .
T Consensus 437 ~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 515 (606)
T 3vq2_A 437 KIDF-DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515 (606)
T ss_dssp EECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred Cccc-hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence 3321 12244556666666666532221 11 245667777777765432 2234566777777777655 3
Q ss_pred eccccccccceeeeecc
Q 015886 333 FSSNALSLSETSLCFSS 349 (398)
Q Consensus 333 ~~~~~~~L~~l~i~~~~ 349 (398)
.+.++++|++++++.+.
T Consensus 516 ~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp GTTTCTTCCEEECTTSC
T ss_pred HccCCCcCCEEECCCCc
Confidence 45566777777775554
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.48 E-value=1.2e-13 Score=132.74 Aligned_cols=120 Identities=19% Similarity=0.142 Sum_probs=82.7
Q ss_pred cCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceE
Q 015886 229 SNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTL 303 (398)
Q Consensus 229 p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L 303 (398)
++|+.++++++.... ....++.+++|+.|+++++.+.... ...+..+++|+.|+++++. ++.+. ..+++|++|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-DNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-hhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEE
Confidence 355556555554111 1123567788999999888776532 2235678899999999873 33332 257899999
Q ss_pred eccccccce---eccccCCCcceEEEeccce-----eeccccccccceeeeeccc
Q 015886 304 ILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSH 350 (398)
Q Consensus 304 ~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~~ 350 (398)
++++|.... .....+++|+.|.+.++.. .++..+++|++++++.+..
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 999987642 2345678999999999877 4567889999999977753
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.47 E-value=8.5e-14 Score=138.69 Aligned_cols=235 Identities=19% Similarity=0.160 Sum_probs=169.3
Q ss_pred CCeEEEEEecCCccccCCcc-ccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886 115 EVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (398)
Q Consensus 115 ~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 192 (398)
+++++++..+ ....++.. +..+++|++|+++++.+... .....+++|++|+++++.+..... ..+..+|+|+.|+
T Consensus 255 ~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKH--YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTC--CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEE
T ss_pred ceeEEEeecC--ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEE
Confidence 3444444432 23344443 56689999999999987644 556788999999999998743221 2367899999999
Q ss_pred eeecCCccee---ecCCCCCCceEEEecCCCcceee------ecccCceEEEEeeeeccce-eEeecCCCCCceEEeecc
Q 015886 193 IRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE------IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFL 262 (398)
Q Consensus 193 l~~~~~~~~~---~i~~~~~L~~L~l~~~~~l~~~~------~~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~ 262 (398)
+.+|.....+ .+..+++|+.|++.++. +..+. ..+++|++|+++++..... ...+..+++|+.|+++++
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 9998654333 24567999999999983 33332 2678999999998862221 224678899999999998
Q ss_pred CCchHHHhhhhcCCCCCcEEeccCcccccccc---ccccccceEeccccccce------eccccCCCcceEEEeccce--
Q 015886 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI------QVEIETPNLSIFKYHGDLI-- 331 (398)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~~~------~~~~~~p~L~~l~~~~~~~-- 331 (398)
.+........+..+++|+.|++++|......+ ..+++|++|++++|.... .....+++|+.|.++++..
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 87654444556789999999999984332222 357899999999997642 2356788999999999877
Q ss_pred ---eeccccccccceeeeecccchh
Q 015886 332 ---SFSSNALSLSETSLCFSSHLMV 353 (398)
Q Consensus 332 ---~~~~~~~~L~~l~i~~~~~~~~ 353 (398)
..+.++++|++++++.+.....
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred cChhhhccccCCCEEECCCCccCcC
Confidence 4567889999999977754433
No 19
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=3.5e-15 Score=137.52 Aligned_cols=193 Identities=18% Similarity=0.253 Sum_probs=141.2
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEE-EeCHHHHHHHHhcCccccE
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREV-CADDQAIASLISGCPLIEY 190 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~ 190 (398)
+++++|+++.+......++..+..+++|++|++++|.+... .....+++|++|++++| .+++..+..++..||+|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 58999988875433334677778899999999999976533 34556999999999999 5688888888999999999
Q ss_pred EEeeecCCccee----ecCCCC-CCceEEEecCC-Ccc-----eeeecccCceEEEEeeeec--cceeEeecCCCCCceE
Q 015886 191 LEIRSCEGLESL----DLVNLS-NLKEIILVNTS-DIK-----RVEIKTSNVNALAIHQTYL--FPIEVNVSSCGNLKCL 257 (398)
Q Consensus 191 L~l~~~~~~~~~----~i~~~~-~L~~L~l~~~~-~l~-----~~~~~~p~L~~l~l~~~~~--~~~~~~~~~~~~L~~L 257 (398)
|++.+|..+... .+..++ +|++|++.+|. .+. .....+|+|++|+++++.. ......+..+++|++|
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 999999555422 134468 99999999983 222 2223789999999998872 2223356788999999
Q ss_pred Eeecc-CCchHHHhhhhcCCCCCcEEeccCcccccc--ccccccccceEeccccc
Q 015886 258 KFDFL-PIEDEWLCNGISKLPLLEYLSMTKCHKLTS--VRISSPCLKTLILECCD 309 (398)
Q Consensus 258 ~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~--~~~~~~~L~~L~l~~c~ 309 (398)
+++++ .+.+..+.. +..+++|+.|++++| +.. +..-...++.|+++++.
T Consensus 253 ~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 253 SLSRCYDIIPETLLE-LGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp ECTTCTTCCGGGGGG-GGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEESCCC
T ss_pred eCCCCCCCCHHHHHH-HhcCCCCCEEeccCc--cCHHHHHHHHhhCcceEEeccc
Confidence 99988 455554433 567999999999998 332 22222457777776544
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.45 E-value=9.5e-14 Score=138.35 Aligned_cols=223 Identities=17% Similarity=0.084 Sum_probs=138.7
Q ss_pred CCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHH-HHHHHHhcCccccEEEeeecCCcce-eecCCCCCCceEE
Q 015886 137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQ-AIASLISGCPLIEYLEIRSCEGLES-LDLVNLSNLKEII 214 (398)
Q Consensus 137 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~-~l~~l~~~cp~Le~L~l~~~~~~~~-~~i~~~~~L~~L~ 214 (398)
.+++|++|+++++..........+++|+.|+++++.++.. .+...+..++.|+.|++.+|..... -.+..+++|+.|.
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeE
Confidence 3444444444444221112334555666666665554211 1122345677777777776642211 1244567888888
Q ss_pred EecCC--Ccc--eeeecccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccc
Q 015886 215 LVNTS--DIK--RVEIKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK 289 (398)
Q Consensus 215 l~~~~--~l~--~~~~~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 289 (398)
+.+|. ... .....+++|+.|+++++.... ....++.+++|+.|+++++.+.+..+...+..+++|+.|++++|..
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 88771 111 112256888999988876221 1224678899999999998877654555677899999999999843
Q ss_pred ccccc---ccccccceEeccccccce---eccccCCCcceEEEeccce----eeccccc-cccceeeeecccch-hhHHH
Q 015886 290 LTSVR---ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI----SFSSNAL-SLSETSLCFSSHLM-VNIEW 357 (398)
Q Consensus 290 ~~~~~---~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~----~~~~~~~-~L~~l~i~~~~~~~-~~~~~ 357 (398)
....+ ..+++|++|++++|.... .....+++|+.|.++++.. ..+...+ +|+.+++..+...+ ....|
T Consensus 486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence 32222 267899999999997653 2346678999999999887 3355554 69999997765332 34445
Q ss_pred HH
Q 015886 358 VV 359 (398)
Q Consensus 358 ~~ 359 (398)
+.
T Consensus 566 ~~ 567 (606)
T 3vq2_A 566 FL 567 (606)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 21
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.45 E-value=1e-13 Score=126.75 Aligned_cols=206 Identities=17% Similarity=0.105 Sum_probs=98.0
Q ss_pred CCeEEEEEecCCccccCC-ccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 115 EVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 115 ~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
++++|+++.+.. ..++ ..+..+++|++|+++++.+........+++|++|+++++.++. +..++.|+.|++
T Consensus 35 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L~l 106 (317)
T 3o53_A 35 NVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHA 106 (317)
T ss_dssp GCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTTCCEEEC
T ss_pred CCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCCcCEEEC
Confidence 677776665322 2233 3445567777777777665433335556666666666665521 113356666666
Q ss_pred eecCCcceeecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCchHHHhhh
Q 015886 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNG 272 (398)
Q Consensus 194 ~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 272 (398)
++|.. ..+....+++|+.|.+.++ .... ....+..+++|+.|+++++.+.......+
T Consensus 107 ~~n~l-~~~~~~~~~~L~~L~l~~N---------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 107 ANNNI-SRVSCSRGQGKKNIYLANN---------------------KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp CSSCC-SEEEECCCSSCEEEECCSS---------------------CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred CCCcc-CCcCccccCCCCEEECCCC---------------------CCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 55432 2222223455555555554 3111 01123344445555554444443322333
Q ss_pred hcCCCCCcEEeccCccccccccc--cccccceEeccccccce--eccccCCCcceEEEeccce----eecccccccccee
Q 015886 273 ISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLI--QVEIETPNLSIFKYHGDLI----SFSSNALSLSETS 344 (398)
Q Consensus 273 ~~~~~~L~~L~l~~c~~~~~~~~--~~~~L~~L~l~~c~~~~--~~~~~~p~L~~l~~~~~~~----~~~~~~~~L~~l~ 344 (398)
...+++|+.|+++++. ++.+.. .+++|++|++++|.... ......++|+.|.++++.. ..+...++|+.++
T Consensus 165 ~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 165 AASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243 (317)
T ss_dssp GGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEE
T ss_pred hhccCcCCEEECCCCc-CcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEE
Confidence 3344455555555432 111111 24445555555444321 1123344555555555444 2345667888888
Q ss_pred eeecccc
Q 015886 345 LCFSSHL 351 (398)
Q Consensus 345 i~~~~~~ 351 (398)
++.+...
T Consensus 244 l~~N~~~ 250 (317)
T 3o53_A 244 LRGNGFH 250 (317)
T ss_dssp CTTCCCB
T ss_pred ccCCCcc
Confidence 8666543
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=133.49 Aligned_cols=219 Identities=16% Similarity=0.134 Sum_probs=121.7
Q ss_pred CCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce--eecCCCCCCce
Q 015886 137 YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKE 212 (398)
Q Consensus 137 ~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~~i~~~~~L~~ 212 (398)
.+++|++|+++++.+... ..+..+++|+.|+|+++.+..... ..+..+++|++|++.+|..... -.+..+++|+.
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 345555555555443221 233445555555555443311100 1133455555555555432111 11333456666
Q ss_pred EEEecCCCcceee----ecccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886 213 IILVNTSDIKRVE----IKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 213 L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (398)
|++.++ .+..+. ..+++|++|+++++.... .........+|+.|+++++.+.... ...+..+++|+.|+++++
T Consensus 181 L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 181 LRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp EEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC-HHHHTTCTTCCEEECCSS
T ss_pred EeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC-HHHhcCccccCeeECCCC
Confidence 666555 111111 144566666666554111 1111223347888888877765422 234567899999999997
Q ss_pred cccccccc----cccccceEeccccccce---eccccCCCcceEEEeccce-----eeccccccccceeeeecccc-hhh
Q 015886 288 HKLTSVRI----SSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHL-MVN 354 (398)
Q Consensus 288 ~~~~~~~~----~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~~~-~~~ 354 (398)
. ++.+.. .+++|+.|+++++.... .....+++|+.|.++++.. ..+.++++|+++.+..+.-. ...
T Consensus 259 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 259 P-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp C-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred c-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 4 333332 56899999999887642 2345678999999999876 45678899999999776422 234
Q ss_pred HHHHH
Q 015886 355 IEWVV 359 (398)
Q Consensus 355 ~~~~~ 359 (398)
..|+.
T Consensus 338 ~~~~~ 342 (477)
T 2id5_A 338 LLWVF 342 (477)
T ss_dssp GHHHH
T ss_pred hHhHH
Confidence 45543
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=132.89 Aligned_cols=233 Identities=18% Similarity=0.093 Sum_probs=152.9
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEE
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 191 (398)
+++++|+++.+.. ....|..+..+++|++|+|+++.+... ..+..+++|++|+|+++.+.... ...+..+++|+.|
T Consensus 56 ~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L 133 (477)
T 2id5_A 56 PHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLKSL 133 (477)
T ss_dssp TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcc-CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC-hhHccccccCCEE
Confidence 4788887765322 112244566778888888888776544 23567788888888877663211 1224677888888
Q ss_pred EeeecCCcce--eecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccce-eEeecCCCCCceEEeeccCC
Q 015886 192 EIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPI 264 (398)
Q Consensus 192 ~l~~~~~~~~--~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 264 (398)
++.++..... -.+..+++|+.|++.+| .+..+. ..+++|+.|+++++..... ...+..+++|+.|+++++..
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 8887643221 13445688888888887 233332 2567888888887762211 12467788888888887654
Q ss_pred chHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccce---eccccCCCcceEEEeccce-----e
Q 015886 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----S 332 (398)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~ 332 (398)
........ ....+|+.|++++| .++.++ ..+++|+.|+++++.... .....+++|+.|.+.++.. .
T Consensus 213 ~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 213 LDTMTPNC-LYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp CCEECTTT-TTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred ccccCccc-ccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence 43222222 22358999999887 344444 257899999999887542 2346678999999998876 4
Q ss_pred eccccccccceeeeecccc
Q 015886 333 FSSNALSLSETSLCFSSHL 351 (398)
Q Consensus 333 ~~~~~~~L~~l~i~~~~~~ 351 (398)
.+.++++|++++++.+...
T Consensus 291 ~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp TBTTCTTCCEEECCSSCCS
T ss_pred HhcCcccCCEEECCCCcCc
Confidence 5678899999999777543
No 24
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=2.2e-13 Score=135.26 Aligned_cols=97 Identities=19% Similarity=0.279 Sum_probs=59.3
Q ss_pred CCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccc---cccccccccccceEeccc--------cccce-----e
Q 015886 250 SCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK---LTSVRISSPCLKTLILEC--------CDKLI-----Q 313 (398)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~---~~~~~~~~~~L~~L~l~~--------c~~~~-----~ 313 (398)
.+++|++|+++++.+.+..+..++..+++|+.|++.+|.. +..+...+++|++|++.+ |..+. .
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 4678888888888887777777778888888888888722 112222467888888843 33331 1
Q ss_pred ccccCCCcceEEEeccce------eeccccccccceeee
Q 015886 314 VEIETPNLSIFKYHGDLI------SFSSNALSLSETSLC 346 (398)
Q Consensus 314 ~~~~~p~L~~l~~~~~~~------~~~~~~~~L~~l~i~ 346 (398)
+...+|+|+.|.+.+... .+..++++|+++.+.
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 123356666664443333 222345566666665
No 25
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.43 E-value=5.3e-13 Score=128.03 Aligned_cols=219 Identities=15% Similarity=0.114 Sum_probs=131.0
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
++++.|+++.+.... ++ +..+++|++|+++++.+...+ ...+++|++|+++++.++.-. +..+++|+.|++
T Consensus 64 ~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec----CCCCCcCCEEEC
Confidence 466666666543222 22 445666777777776655432 556667777777766663311 456677777777
Q ss_pred eecCCcceeecCCCCCCceEEEecCCCcceeee-cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhh
Q 015886 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG 272 (398)
Q Consensus 194 ~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 272 (398)
.+|.. ..+.+..+++|+.|.+.+|..+..+.+ .+++|+.|+++++..... .++.+++|+.|+++++.+....
T Consensus 135 ~~N~l-~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l--~l~~l~~L~~L~l~~N~l~~~~---- 207 (457)
T 3bz5_A 135 ARNTL-TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNITKLD---- 207 (457)
T ss_dssp TTSCC-SCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC--CCTTCTTCCEEECCSSCCSCCC----
T ss_pred CCCcc-ceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee--ccccCCCCCEEECcCCcCCeec----
Confidence 66533 224455567777777777644444433 567777887777763322 2677778888888877766531
Q ss_pred hcCCCCCcEEeccCccccccccc-cccccceEeccccccceeccccCCCcceEEEec----------cce---eeccccc
Q 015886 273 ISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVEIETPNLSIFKYHG----------DLI---SFSSNAL 338 (398)
Q Consensus 273 ~~~~~~L~~L~l~~c~~~~~~~~-~~~~L~~L~l~~c~~~~~~~~~~p~L~~l~~~~----------~~~---~~~~~~~ 338 (398)
+..+++|+.|+++++ .++.++. .+++|+.|+++++..-..-...+++|+.+.+.+ +.. ....+++
T Consensus 208 l~~l~~L~~L~Ls~N-~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~ 286 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSN-KLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286 (457)
T ss_dssp CTTCTTCSEEECCSS-CCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCT
T ss_pred cccCCCCCEEECcCC-cccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccc
Confidence 556788888888886 3333443 567888888887765322223445555444333 222 2334567
Q ss_pred cccceeeeecc
Q 015886 339 SLSETSLCFSS 349 (398)
Q Consensus 339 ~L~~l~i~~~~ 349 (398)
+|+.++++.+.
T Consensus 287 ~L~~L~Ls~n~ 297 (457)
T 3bz5_A 287 KIKELDVTHNT 297 (457)
T ss_dssp TCCCCCCTTCT
T ss_pred cCCEEECCCCc
Confidence 88888885553
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.43 E-value=6.9e-13 Score=123.05 Aligned_cols=232 Identities=14% Similarity=0.101 Sum_probs=165.9
Q ss_pred CCCeEEEEEecCCccccCCc-cccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 190 (398)
+++++|+++.+.. ..++. .+..+++|++|+++++.+... .....+++|++|+|+++.++.-. ...+..+++|+.
T Consensus 52 ~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSE
T ss_pred ccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCE
Confidence 4889998876432 34554 567789999999999977543 45778899999999999884322 233678999999
Q ss_pred EEeeecCCcce---eecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccce-eEeecCCCCCceEEeecc
Q 015886 191 LEIRSCEGLES---LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFL 262 (398)
Q Consensus 191 L~l~~~~~~~~---~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~ 262 (398)
|+++++....- -.+..+++|+.|++.+|..+..+. ..+++|++|+++++..... ...+..+++|++|+++++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 99998854321 134567999999999985555553 2578999999998862221 234678899999999998
Q ss_pred CCchHHHhhhhcCCCCCcEEeccCccccccccc-------cccccceEeccccccce-------eccccCCCcceEEEec
Q 015886 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-------SSPCLKTLILECCDKLI-------QVEIETPNLSIFKYHG 328 (398)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-------~~~~L~~L~l~~c~~~~-------~~~~~~p~L~~l~~~~ 328 (398)
.+... ...+...+++|+.|+++++. ++.+.. ..+.++.+++.++.... .....+++|+.|.+++
T Consensus 209 ~l~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 209 QHILL-LEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp CSTTH-HHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred ccccc-hhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 87543 23345568999999999973 222221 24556777776665421 2235678999999999
Q ss_pred cce-----eeccccccccceeeeeccc
Q 015886 329 DLI-----SFSSNALSLSETSLCFSSH 350 (398)
Q Consensus 329 ~~~-----~~~~~~~~L~~l~i~~~~~ 350 (398)
+.. .++.+.++|++++++.+..
T Consensus 287 N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 287 NQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 877 4457889999999977753
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.43 E-value=6.1e-13 Score=127.65 Aligned_cols=240 Identities=14% Similarity=0.097 Sum_probs=171.2
Q ss_pred CCceEEEEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcc
Q 015886 83 ISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFS 162 (398)
Q Consensus 83 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~ 162 (398)
..++.+.++..... . + .....+++++|+++.+.... ++ +..+++|++|+++++.+... ....+++
T Consensus 64 ~~L~~L~Ls~n~l~---~---~----~~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~l-~~~~l~~ 128 (457)
T 3bz5_A 64 TGLTKLICTSNNIT---T---L----DLSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTKL-DVSQNPL 128 (457)
T ss_dssp TTCSEEECCSSCCS---C---C----CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSCC-CCTTCTT
T ss_pred CCCCEEEccCCcCC---e---E----ccccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCee-cCCCCCc
Confidence 46777776644321 1 1 11223589999998754333 33 66789999999999988654 3778899
Q ss_pred cceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecCCCcceeee-cccCceEEEEeeeec
Q 015886 163 LRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYL 241 (398)
Q Consensus 163 L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~l~l~~~~~ 241 (398)
|+.|+++++.++.-. +..++.|+.|++++|.....+.+..+++|+.|++++| .+..+.+ .+++|+.|+++++..
T Consensus 129 L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 129 LTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELDVSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCCCTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCccceec----cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceeccccCCCCCEEECcCCcC
Confidence 999999999884422 6789999999999998777777778899999999998 3333443 678999999998873
Q ss_pred cceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc-ccc----------ccceEecccccc
Q 015886 242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSP----------CLKTLILECCDK 310 (398)
Q Consensus 242 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-~~~----------~L~~L~l~~c~~ 310 (398)
... .++.+++|+.|+++++.+... . +..+++|+.|+++++. ++.++. .++ +|+.|++++|..
T Consensus 204 ~~~--~l~~l~~L~~L~Ls~N~l~~i--p--~~~l~~L~~L~l~~N~-l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~ 276 (457)
T 3bz5_A 204 TKL--DLNQNIQLTFLDCSSNKLTEI--D--VTPLTQLTYFDCSVNP-LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQ 276 (457)
T ss_dssp SCC--CCTTCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSC-CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred Cee--ccccCCCCCEEECcCCccccc--C--ccccCCCCEEEeeCCc-CCCcCHHHCCCCCEEeccCCCCCEEECCCCcc
Confidence 332 578899999999999988762 2 6678999999999963 333332 334 455666676665
Q ss_pred ceecc-ccCCCcceEEEeccce--e-----------eccccccccceeeeecc
Q 015886 311 LIQVE-IETPNLSIFKYHGDLI--S-----------FSSNALSLSETSLCFSS 349 (398)
Q Consensus 311 ~~~~~-~~~p~L~~l~~~~~~~--~-----------~~~~~~~L~~l~i~~~~ 349 (398)
...+. ..+++|+.|.++++.. . -+.+.++|+++.++.+.
T Consensus 277 ~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 277 LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp CCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred CCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence 54333 4568999999988764 1 23445667777765543
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.42 E-value=7.9e-13 Score=130.62 Aligned_cols=227 Identities=17% Similarity=0.138 Sum_probs=147.2
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
+++++|++..+. ...+|..+..+ +|++|++.+|.+...+. ..+++|+.|++.++......- ...+|+|+.|++
T Consensus 282 ~~L~~L~l~~~~--l~~l~~~~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l 354 (570)
T 2z63_A 282 TNVSSFSLVSVT--IERVKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDL 354 (570)
T ss_dssp TTCSEEEEESCE--ECSCCBCCSCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCC---CCBCTTCCEEEC
T ss_pred CcccEEEecCcc--chhhhhhhccC-CccEEeeccCcccccCc-ccccccCEEeCcCCccccccc---cccCCCCCEEeC
Confidence 356666665432 22455555555 67777777766653222 467777777777766521110 156778888888
Q ss_pred eecCCcce----eecCCCCCCceEEEecCCCccee---eecccCceEEEEeeeeccce--eEeecCCCCCceEEeeccCC
Q 015886 194 RSCEGLES----LDLVNLSNLKEIILVNTSDIKRV---EIKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPI 264 (398)
Q Consensus 194 ~~~~~~~~----~~i~~~~~L~~L~l~~~~~l~~~---~~~~p~L~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~ 264 (398)
++|..... ..+..+++|+.|++.+|. +..+ ...+++|++|+++++..... ...+..+++|+.|+++++.+
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred cCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence 77654321 123456788888888772 2222 23677888888887762211 12457788899999988776
Q ss_pred chHHHhhhhcCCCCCcEEeccCcccc-cccc---ccccccceEecccccccee---ccccCCCcceEEEeccce-----e
Q 015886 265 EDEWLCNGISKLPLLEYLSMTKCHKL-TSVR---ISSPCLKTLILECCDKLIQ---VEIETPNLSIFKYHGDLI-----S 332 (398)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~~-~~~~---~~~~~L~~L~l~~c~~~~~---~~~~~p~L~~l~~~~~~~-----~ 332 (398)
.... ...+..+++|+.|++++|... ..++ ..+++|+.|++++|..... ....+++|+.|.+.++.. .
T Consensus 434 ~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 434 RVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp EECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccc-hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 5432 334567899999999997532 1232 3578999999999876532 335678999999998876 4
Q ss_pred eccccccccceeeeecc
Q 015886 333 FSSNALSLSETSLCFSS 349 (398)
Q Consensus 333 ~~~~~~~L~~l~i~~~~ 349 (398)
.+.++++|++++++.+.
T Consensus 513 ~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhhcccCCcEEEecCCc
Confidence 56788999999997764
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.42 E-value=9.7e-13 Score=123.76 Aligned_cols=230 Identities=17% Similarity=0.146 Sum_probs=142.4
Q ss_pred CCCeEEEEEecCCccccCC-ccccCCCCeeEEEEeccccCCCC--ccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886 114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQPS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 190 (398)
+++++|+++.+. ...++ ..+..+++|++|+++++.+...+ .+..+++|++|+++++.+.... ...+..+++|+.
T Consensus 93 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 169 (390)
T 3o6n_A 93 HTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQN 169 (390)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCE
T ss_pred CCcCEEECCCCC--CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCE
Confidence 477777777533 22333 33556778888888887765442 2456778888888777663211 112456778888
Q ss_pred EEeeecCCcceeecCCCCCCceEEEecCC------------------Ccceeee-cccCceEEEEeeeeccceeEeecCC
Q 015886 191 LEIRSCEGLESLDLVNLSNLKEIILVNTS------------------DIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSC 251 (398)
Q Consensus 191 L~l~~~~~~~~~~i~~~~~L~~L~l~~~~------------------~l~~~~~-~~p~L~~l~l~~~~~~~~~~~~~~~ 251 (398)
|++.++.. ..+.+..+++|+.|++.++. .+..+.. ..++|+.|+++++..... ..+..+
T Consensus 170 L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l 247 (390)
T 3o6n_A 170 LQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNY 247 (390)
T ss_dssp EECCSSCC-SBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGC
T ss_pred EECCCCcC-CccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCC
Confidence 88877643 22233334555555544430 1222211 235677777776652221 245678
Q ss_pred CCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccce--eccccCCCcceEEE
Q 015886 252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI--QVEIETPNLSIFKY 326 (398)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~--~~~~~~p~L~~l~~ 326 (398)
++|++|+++++.+.... ...+..+++|+.|+++++ .++.++. .+++|++|++++|.... .....+++|+.|.+
T Consensus 248 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYL 325 (390)
T ss_dssp TTCSEEECCSSCCCEEE-SGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEEC
T ss_pred CCccEEECCCCcCCCcC-hhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEEC
Confidence 88888888888776532 233566788888888886 3333333 56889999998886531 22345678999999
Q ss_pred eccce--eeccccccccceeeeeccc
Q 015886 327 HGDLI--SFSSNALSLSETSLCFSSH 350 (398)
Q Consensus 327 ~~~~~--~~~~~~~~L~~l~i~~~~~ 350 (398)
.++.. .-+...++|+++++..+..
T Consensus 326 ~~N~i~~~~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 326 DHNSIVTLKLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred CCCccceeCchhhccCCEEEcCCCCc
Confidence 88877 5567788999999976653
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=3.1e-13 Score=134.34 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=63.0
Q ss_pred ecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccce--eccccCCCcc
Q 015886 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI--QVEIETPNLS 322 (398)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~--~~~~~~p~L~ 322 (398)
+..+++|+.|+++++.+.... ...+..+++|+.|+++++ .+..++. .+++|+.|++++|.... .....+++|+
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEE-SGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred hccCCCCCEEECCCCccCCCC-HHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCC
Confidence 456677777777777665432 223456777777777775 2333332 46778888887776531 1224567778
Q ss_pred eEEEeccce--eeccccccccceeeeecc
Q 015886 323 IFKYHGDLI--SFSSNALSLSETSLCFSS 349 (398)
Q Consensus 323 ~l~~~~~~~--~~~~~~~~L~~l~i~~~~ 349 (398)
.|.+.++.. .-+...++|+.++++.+.
T Consensus 328 ~L~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 328 NLYLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred EEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 887777766 445667788888886554
No 31
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.41 E-value=2.9e-12 Score=126.97 Aligned_cols=217 Identities=16% Similarity=0.051 Sum_probs=130.5
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
++++.|+++.+.. ..+|. .+++|++|+|++|.+...+. .+++|+.|+|++|.++. +-...++|+.|++
T Consensus 61 ~~L~~L~L~~N~l--~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----l~~~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNL--TSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH-----LPALPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCC--SCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC-----CCCCCTTCCEEEC
T ss_pred CCCcEEEecCCCC--CCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC-----CCCCCCCcCEEEC
Confidence 5778887776432 24554 35778888888877654322 67788888888776632 1114577777777
Q ss_pred eecCCcceeecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeecccee----------------Eee-cCCCCCce
Q 015886 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIE----------------VNV-SSCGNLKC 256 (398)
Q Consensus 194 ~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~----------------~~~-~~~~~L~~ 256 (398)
.+|.. ..+... +++|++|++++| .+..+....++|+.|+++++...... ..+ ...++|+.
T Consensus 129 ~~N~l-~~lp~~-l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~ 205 (622)
T 3g06_A 129 FGNQL-TSLPVL-PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYK 205 (622)
T ss_dssp CSSCC-SCCCCC-CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred CCCCC-CcCCCC-CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhE
Confidence 76642 222221 366777777766 22223223344444444443311110 000 12345555
Q ss_pred EEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccccccccceEeccccccceeccccCCCcceEEEeccce----e
Q 015886 257 LKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI----S 332 (398)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~p~L~~l~~~~~~~----~ 332 (398)
|+++++.+.. +...+++|+.|+++++ .++.++..+++|++|+++++. +..+....++|+.|.++++.. .
T Consensus 206 L~L~~N~l~~-----l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N~L~~lp~ 278 (622)
T 3g06_A 206 LWAYNNRLTS-----LPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLTRLPE 278 (622)
T ss_dssp EECCSSCCSS-----CCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCCSCCG
T ss_pred EECcCCcccc-----cCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCCCCCcCCH
Confidence 5555444432 2233477888888876 556666677888999988874 334555778899999998877 4
Q ss_pred eccccccccceeeeecccch
Q 015886 333 FSSNALSLSETSLCFSSHLM 352 (398)
Q Consensus 333 ~~~~~~~L~~l~i~~~~~~~ 352 (398)
.+.+.++|+.++++.+....
T Consensus 279 ~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp GGGGSCTTCEEECCSCCCCH
T ss_pred HHhhccccCEEEecCCCCCC
Confidence 57788999999997776433
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.41 E-value=5.1e-13 Score=131.99 Aligned_cols=230 Identities=13% Similarity=0.123 Sum_probs=168.1
Q ss_pred CCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 115 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
.++.+.+..........+..+..+++|+.|++.++.+... .....+ +|+.|+++++.+.. +. ...++.|+.|++
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~--~~~l~~L~~L~l 332 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FP--TLKLKSLKRLTF 332 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CC--BCBCSSCCEEEE
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cC--cccccccCEEeC
Confidence 4566666553333445566677789999999999877644 445556 99999999998741 11 147899999999
Q ss_pred eecCCcceeecCCCCCCceEEEecCCCcceee------ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchH
Q 015886 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVE------IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDE 267 (398)
Q Consensus 194 ~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~------~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 267 (398)
.++..........+++|+.|++.+|. +..+. ..+++|++|+++++........+..+++|++|+++++.+...
T Consensus 333 ~~n~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 333 TSNKGGNAFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp ESCBSCCBCCCCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC
T ss_pred cCCccccccccccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc
Confidence 99876655555667999999999883 33221 267899999999887433344478899999999998877654
Q ss_pred HHhhhhcCCCCCcEEeccCcccccccc---ccccccceEeccccccc----eeccccCCCcceEEEeccce-----eecc
Q 015886 268 WLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKL----IQVEIETPNLSIFKYHGDLI-----SFSS 335 (398)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~~----~~~~~~~p~L~~l~~~~~~~-----~~~~ 335 (398)
.....+..+++|+.|++++|......+ ..+++|++|++++|... ......+++|+.|.+.++.. ..+.
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 333456788999999999985433322 35789999999999754 23446778999999999877 4567
Q ss_pred ccccccceeeeeccc
Q 015886 336 NALSLSETSLCFSSH 350 (398)
Q Consensus 336 ~~~~L~~l~i~~~~~ 350 (398)
++++|++++++.+..
T Consensus 492 ~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 492 SLSSLQVLNMASNQL 506 (570)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred cccCCCEEeCCCCcC
Confidence 789999999976643
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.41 E-value=3.4e-13 Score=130.55 Aligned_cols=204 Identities=12% Similarity=0.068 Sum_probs=93.0
Q ss_pred CeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEec
Q 015886 140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVN 217 (398)
Q Consensus 140 ~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~ 217 (398)
+|++|+|+++.+... ..+..+++|+.|+|++|.++... . +..+++|+.|++++|. +..+. ..++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL--VGPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCc-CCCCC--CCCCcCEEECcC
Confidence 444444444444322 22334444444444444331100 0 3344555555554442 11111 124555555555
Q ss_pred CCCcceeeecccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc-
Q 015886 218 TSDIKRVEIKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI- 295 (398)
Q Consensus 218 ~~~l~~~~~~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~- 295 (398)
|.-........++|+.|+++++.... ....++.+++|+.|+++++.+.......+...+++|+.|+++++. ++.++.
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~ 187 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ 187 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccccc
Confidence 42111111234555555555554111 122344556666666665555543333333345666666666642 222221
Q ss_pred -cccccceEeccccccce--eccccCCCcceEEEeccce----eeccccccccceeeeeccc
Q 015886 296 -SSPCLKTLILECCDKLI--QVEIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSSH 350 (398)
Q Consensus 296 -~~~~L~~L~l~~c~~~~--~~~~~~p~L~~l~~~~~~~----~~~~~~~~L~~l~i~~~~~ 350 (398)
.+++|+.|+++++.... .-...+++|+.|.++++.. ..+...++|+.+++..+..
T Consensus 188 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence 34566666666554431 1123445666666666554 3344567777777765543
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.41 E-value=1.1e-12 Score=125.39 Aligned_cols=216 Identities=18% Similarity=0.174 Sum_probs=105.6
Q ss_pred CCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce--eecCCCCCCceEE
Q 015886 139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEII 214 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~~i~~~~~L~~L~ 214 (398)
++++.|+|+++.+... ..+..+++|++|+|+++.+..-.. ..+..+++|+.|++++|....- -.+..+++|+.|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 4556666666554322 344555666666666555421111 1134556666666665532211 1133345666666
Q ss_pred EecCCCcceee----ecccCceEEEEeeeeccce--eEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcc
Q 015886 215 LVNTSDIKRVE----IKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (398)
Q Consensus 215 l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (398)
+.++ .+..+. ..+++|+.|+++++..... ...+..+++|+.|+++++.+... .. +..+++|+.|+++++
T Consensus 143 L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~N- 217 (440)
T 3zyj_A 143 LRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PN-LTPLIKLDELDLSGN- 217 (440)
T ss_dssp CCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CC-CTTCSSCCEEECTTS-
T ss_pred CCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cc-cCCCcccCEEECCCC-
Confidence 6655 222222 1345666666655331110 01244566666666666555431 11 345566666666665
Q ss_pred cccccc----ccccccceEeccccccce---eccccCCCcceEEEeccce-----eeccccccccceeeeecc-cchhhH
Q 015886 289 KLTSVR----ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS-HLMVNI 355 (398)
Q Consensus 289 ~~~~~~----~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~-~~~~~~ 355 (398)
.++.+. ..+++|++|+++++.... .....+++|+.|.++++.. ..+...++|+.++++.+. .-....
T Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 222221 144566666666655431 1224456666666666555 344556777777775553 122344
Q ss_pred HHHHH
Q 015886 356 EWVVE 360 (398)
Q Consensus 356 ~~~~~ 360 (398)
.|+..
T Consensus 298 ~~l~~ 302 (440)
T 3zyj_A 298 LWLSW 302 (440)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 55544
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.40 E-value=1.5e-12 Score=122.53 Aligned_cols=231 Identities=12% Similarity=0.094 Sum_probs=154.9
Q ss_pred hCCCeEEEEEecCCccccCCc-cccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCcccc
Q 015886 113 ESEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (398)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 189 (398)
.+++++|+++.+.. ..++. .+..+++|++|+++++.+... .....+++|++|+|+++.+..- ...++..+++|+
T Consensus 68 l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~ 144 (390)
T 3o6n_A 68 FRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLT 144 (390)
T ss_dssp CCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred cccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCc
Confidence 46999999876432 34443 566789999999999987654 3467899999999999987421 112356789999
Q ss_pred EEEeeecCCcce--eecCCCCCCceEEEecCCCcceeee-cccCceEEEEeeeeccce-----------------eEeec
Q 015886 190 YLEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPI-----------------EVNVS 249 (398)
Q Consensus 190 ~L~l~~~~~~~~--~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~l~l~~~~~~~~-----------------~~~~~ 249 (398)
.|++++|..... -.+..+++|+.|++.++ .+..+.. ..++|+.++++++..... .....
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~ 223 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 223 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCC-cCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccc
Confidence 999998854322 12556799999999988 2333332 455666666554431100 01123
Q ss_pred CCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc---ccccccceEeccccccce--eccccCCCcceE
Q 015886 250 SCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI--QVEIETPNLSIF 324 (398)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~~~--~~~~~~p~L~~l 324 (398)
..++|+.|+++++.+.+. ..+..+++|+.|+++++......+ ..+++|++|+++++.... ......|+|+.|
T Consensus 224 ~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300 (390)
T ss_dssp CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEE
T ss_pred ccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEE
Confidence 346788888888777653 346678889999998873222212 256788999998876542 223457889998
Q ss_pred EEeccce----eeccccccccceeeeeccc
Q 015886 325 KYHGDLI----SFSSNALSLSETSLCFSSH 350 (398)
Q Consensus 325 ~~~~~~~----~~~~~~~~L~~l~i~~~~~ 350 (398)
.++++.. ..+...++|++++++.+..
T Consensus 301 ~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 301 DLSHNHLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp ECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred ECCCCcceecCccccccCcCCEEECCCCcc
Confidence 8888776 3345677888888866643
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.40 E-value=2.5e-13 Score=130.41 Aligned_cols=236 Identities=15% Similarity=0.082 Sum_probs=148.4
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHH-HHHhcCccccE
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIA-SLISGCPLIEY 190 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~-~l~~~cp~Le~ 190 (398)
++++.|+++.+.....--+..+..+++|++|+++++.+... .....+++|++|+|+++.+++.... ..+..+++|++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 133 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence 48888888774332222234566788999999999876432 4567789999999998887543332 23667899999
Q ss_pred EEeeecCCccee--e-cCCCCCCceEEEecCCCcceee---e-----------------------------------ccc
Q 015886 191 LEIRSCEGLESL--D-LVNLSNLKEIILVNTSDIKRVE---I-----------------------------------KTS 229 (398)
Q Consensus 191 L~l~~~~~~~~~--~-i~~~~~L~~L~l~~~~~l~~~~---~-----------------------------------~~p 229 (398)
|++++|...... . +..+++|+.|++.++. +..+. + ..+
T Consensus 134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 999988654321 1 4567899999998872 11110 0 114
Q ss_pred CceEEEEeeeeccc---------------eeEeec-------------------------CCCCCceEEeeccCCchHHH
Q 015886 230 NVNALAIHQTYLFP---------------IEVNVS-------------------------SCGNLKCLKFDFLPIEDEWL 269 (398)
Q Consensus 230 ~L~~l~l~~~~~~~---------------~~~~~~-------------------------~~~~L~~L~l~~~~~~~~~~ 269 (398)
+|++|+++++.... ....+. ..++|+.|+++++.+... .
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~ 291 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL-L 291 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE-C
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc-c
Confidence 56666666553100 000001 124666666666665442 2
Q ss_pred hhhhcCCCCCcEEeccCcccccccc---ccccccceEeccccccce---eccccCCCcceEEEeccce-----eeccccc
Q 015886 270 CNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNAL 338 (398)
Q Consensus 270 ~~~~~~~~~L~~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~~~~~~~ 338 (398)
...+..+++|+.|+++++......+ ..+++|++|++++|.... .....+++|+.|.++++.. ..+.+++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 2335667888888888863222211 256788888888886532 2345678899998888776 3566788
Q ss_pred cccceeeeecccc
Q 015886 339 SLSETSLCFSSHL 351 (398)
Q Consensus 339 ~L~~l~i~~~~~~ 351 (398)
+|++++++.+...
T Consensus 372 ~L~~L~L~~N~l~ 384 (455)
T 3v47_A 372 NLKELALDTNQLK 384 (455)
T ss_dssp TCCEEECCSSCCS
T ss_pred cccEEECCCCccc
Confidence 8999998766543
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.40 E-value=1e-12 Score=126.16 Aligned_cols=217 Identities=18% Similarity=0.151 Sum_probs=102.4
Q ss_pred CCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce--eecCCCCCCceEE
Q 015886 139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEII 214 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~~i~~~~~L~~L~ 214 (398)
++|++|+|+++.+... ..+..+++|+.|+|+++.++.-.. ..+..+++|+.|++++|..... -.+..+++|+.|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 4555555555544322 334455555666555554421111 1134455566666555432110 0122345556665
Q ss_pred EecCCCcceeee----cccCceEEEEeeeeccce--eEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcc
Q 015886 215 LVNTSDIKRVEI----KTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (398)
Q Consensus 215 l~~~~~l~~~~~----~~p~L~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (398)
++++ .+..+.. .+++|+.|+++++..... ...+..+++|+.|+++++.+... . .+..+++|+.|+++++.
T Consensus 154 L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 154 LRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--P-NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp CCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--C-CCTTCTTCCEEECTTSC
T ss_pred CCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--c-cccccccccEEECcCCc
Confidence 5555 2222221 345556665555331110 01234555666666665554431 1 13445566666666642
Q ss_pred ccccc----cccccccceEeccccccce---eccccCCCcceEEEeccce-----eeccccccccceeeeecc-cchhhH
Q 015886 289 KLTSV----RISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS-HLMVNI 355 (398)
Q Consensus 289 ~~~~~----~~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~-~~~~~~ 355 (398)
++.+ ...+++|+.|+++++.... .....+++|+.|.+.++.. ..+...++|++++++.+. .-....
T Consensus 230 -l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 230 -FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp -CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred -CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 2221 1134556666666555431 1223455666666666554 345567777777775553 122344
Q ss_pred HHHHHH
Q 015886 356 EWVVEY 361 (398)
Q Consensus 356 ~~~~~~ 361 (398)
.|+...
T Consensus 309 ~~l~~~ 314 (452)
T 3zyi_A 309 LWLAWW 314 (452)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 555443
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.39 E-value=6.2e-13 Score=127.63 Aligned_cols=212 Identities=15% Similarity=0.061 Sum_probs=153.1
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEE
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 191 (398)
++++.|+++.+... ...+..+..+++|++|+|+++.+... ..+..+++|++|+|+++.++.-. ...+..+++|+.|
T Consensus 75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCEE
Confidence 58899988764322 22244567789999999999877533 45677899999999998773211 1225678999999
Q ss_pred EeeecCCccee---ecCCCCCCceEEEecCCCcceeee----cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCC
Q 015886 192 EIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI 264 (398)
Q Consensus 192 ~l~~~~~~~~~---~i~~~~~L~~L~l~~~~~l~~~~~----~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (398)
++++|... .+ .+..+++|+.|++.+|..+..+.. .+++|++|+++++..... ..+..+++|+.|+++++.+
T Consensus 153 ~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCC
T ss_pred ECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcC
Confidence 99988543 22 244578999999998866666653 578999999998873322 2567889999999999887
Q ss_pred chHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccce---eccccCCCcceEEEeccce
Q 015886 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI 331 (398)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~ 331 (398)
.... ...+..+++|+.|+++++. ++.+. ..+++|+.|+++++.... .....+++|+.|.+.++..
T Consensus 231 ~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 231 PEIR-PGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp SEEC-GGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cccC-cccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 6532 3346788999999999973 33332 256899999999986531 2345678899999988766
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.39 E-value=1.7e-12 Score=119.23 Aligned_cols=226 Identities=15% Similarity=0.157 Sum_probs=132.0
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
+++++|+++.+... ...|..+..+++|++|+++++.+...+. ..+++|+.|+++++.+.... ...+..+++|+.|++
T Consensus 76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 76 KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVEL 152 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCS-SCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccCh-hhcccccEEECCCCcccccC-HhHhcCCccccEEEC
Confidence 47777777653221 1224556667788888888776653221 12367888888777663222 223567788888888
Q ss_pred eecCCcc----eeecCCCCCCceEEEecCCCcceeee-cccCceEEEEeeeeccce-eEeecCCCCCceEEeeccCCchH
Q 015886 194 RSCEGLE----SLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDE 267 (398)
Q Consensus 194 ~~~~~~~----~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 267 (398)
.++.... .-.+..+++|+.|++.++ .+..+.. ..++|++|+++++..... ...+..+++|+.|+++++.+...
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence 7765421 122344678888888777 2222322 236788888877662221 22456778888888887776553
Q ss_pred HHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccce---e-c-----cccCCCcceEEEeccce----
Q 015886 268 WLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI---Q-V-----EIETPNLSIFKYHGDLI---- 331 (398)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~---~-~-----~~~~p~L~~l~~~~~~~---- 331 (398)
.. ..+..+++|+.|+++++ .++.++. .+++|++|+++++..-. . + ....+.|+.+.+.+...
T Consensus 232 ~~-~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 232 DN-GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp CT-TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred Ch-hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 21 23456788888888886 3334433 45678888887776531 0 0 01235566666666544
Q ss_pred ---eeccccccccceee
Q 015886 332 ---SFSSNALSLSETSL 345 (398)
Q Consensus 332 ---~~~~~~~~L~~l~i 345 (398)
..+....+|+.+++
T Consensus 310 i~~~~f~~~~~l~~l~L 326 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQL 326 (330)
T ss_dssp SCGGGGTTCCCGGGEEC
T ss_pred cCccccccccceeEEEe
Confidence 23344555555555
No 40
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.38 E-value=9.5e-14 Score=133.58 Aligned_cols=247 Identities=16% Similarity=0.092 Sum_probs=146.8
Q ss_pred CCeEEEEEecCCcc---ccCCccccCCCCeeEEEEeccccCCC-------CccccCcccceEEEEEEEeCHHH---HHHH
Q 015886 115 EVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP-------SENVKLFSLRKLALREVCADDQA---IASL 181 (398)
Q Consensus 115 ~l~~L~l~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~l~~~-------~~~~~~~~L~~L~L~~~~~~~~~---l~~l 181 (398)
++++|+++.+.... ..++..+..+++|++|+++++.+... ......++|++|++++|.+++.. +...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 47777776643222 23455566677777777777765322 01122456777777777764433 3444
Q ss_pred HhcCccccEEEeeecCCcce-e-ecC-----CCCCCceEEEecCCCcce-----ee---ecccCceEEEEeeeeccce--
Q 015886 182 ISGCPLIEYLEIRSCEGLES-L-DLV-----NLSNLKEIILVNTSDIKR-----VE---IKTSNVNALAIHQTYLFPI-- 244 (398)
Q Consensus 182 ~~~cp~Le~L~l~~~~~~~~-~-~i~-----~~~~L~~L~l~~~~~l~~-----~~---~~~p~L~~l~l~~~~~~~~-- 244 (398)
+..++.|++|++++|..... . .+. ..++|++|++.+|. +.. +. ..+++|++|+++++.....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 56678888888877653210 0 010 13588888888872 221 11 1467888888887761110
Q ss_pred ----eEeecCCCCCceEEeeccCCchHH---HhhhhcCCCCCcEEeccCcccccccc---------ccccccceEecccc
Q 015886 245 ----EVNVSSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKCHKLTSVR---------ISSPCLKTLILECC 308 (398)
Q Consensus 245 ----~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~~~~---------~~~~~L~~L~l~~c 308 (398)
......+++|++|+++++.+++.. +...+..+++|+.|+++++. ++..+ ...++|++|++++|
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCC
Confidence 011235788888888888887754 44445568889999988863 22211 12368999999888
Q ss_pred cccee-------ccccCCCcceEEEeccce-----ee----cc-ccccccceeeeecccchhhHHHHHHHHH
Q 015886 309 DKLIQ-------VEIETPNLSIFKYHGDLI-----SF----SS-NALSLSETSLCFSSHLMVNIEWVVEYFE 363 (398)
Q Consensus 309 ~~~~~-------~~~~~p~L~~l~~~~~~~-----~~----~~-~~~~L~~l~i~~~~~~~~~~~~~~~~~~ 363 (398)
..... .....++|+.|.++++.. .. +. ..++|++++++.+.....+...+.....
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 395 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH
Confidence 75421 224568899999888766 11 11 2568999999777654433334444333
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.38 E-value=7.2e-13 Score=126.73 Aligned_cols=212 Identities=14% Similarity=0.074 Sum_probs=138.4
Q ss_pred CCCeEEEEEecCCccccC-CccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886 114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 190 (398)
.+++.|+++.+.. ..+ +..+..+++|++|+|+++.+... ..+..+++|++|+|+++.++.-. ...+..+++|+.
T Consensus 64 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCE
T ss_pred CCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCce
Confidence 4677777766332 223 23456678888888888876533 34567888888888887763211 112456788888
Q ss_pred EEeeecCCcce--eecCCCCCCceEEEecCCCcceeee----cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCC
Q 015886 191 LEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI 264 (398)
Q Consensus 191 L~l~~~~~~~~--~~i~~~~~L~~L~l~~~~~l~~~~~----~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (398)
|+++++....- ..+..+++|+.|++.+|..+..+.. .+++|++|+++++..... ..+..+++|+.|+++++.+
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-CCCTTCSSCCEEECTTSCC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-cccCCCcccCEEECCCCcc
Confidence 88887753321 1244568888888887755555543 467888888887763221 2467778888888888876
Q ss_pred chHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEeccccccce---eccccCCCcceEEEeccce
Q 015886 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI 331 (398)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~ 331 (398)
.... ...+..+++|+.|+++++. ++.+.. .+++|+.|+++++.... .....+++|+.+.+.++.+
T Consensus 220 ~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 220 SAIR-PGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEEC-TTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CccC-hhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 6532 2335677888888888863 333322 56788888888876531 2335567888888888766
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.38 E-value=3.3e-13 Score=123.07 Aligned_cols=215 Identities=11% Similarity=0.066 Sum_probs=149.8
Q ss_pred hCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccC--CCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (398)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 190 (398)
.++++.|+++.+......+|..+..+++|++|+++++.+. .+.....+++|++|+|+++.+... +...+..+++|+.
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG 153 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCe
Confidence 3699999998533344467888888999999999999875 335677899999999999987421 1123567899999
Q ss_pred EEeeecCCccee--ecCCCC-CCceEEEecCCCcceee--ecccCceEEEEeeeecc-ceeEeecCCCCCceEEeeccCC
Q 015886 191 LEIRSCEGLESL--DLVNLS-NLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLPI 264 (398)
Q Consensus 191 L~l~~~~~~~~~--~i~~~~-~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 264 (398)
|++.+|.....+ .+..++ +|+.|++.++.....+. +...+|+.|+++++... .....+..+++|+.|+++++.+
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 999998654322 344455 89999999882111121 22224999999988722 2233567899999999998887
Q ss_pred chHHHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccceecc--ccCCCcceEEEeccc
Q 015886 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE--IETPNLSIFKYHGDL 330 (398)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~~~~--~~~p~L~~l~~~~~~ 330 (398)
.... .. +..+++|+.|+++++.....++. .+++|++|+++++.....+. ...++|+.+.+.+.+
T Consensus 234 ~~~~-~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 234 AFDL-GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCBG-GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred eeec-Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 6422 12 56789999999999754333333 56899999999987653322 345566666666644
No 43
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.38 E-value=2e-12 Score=117.59 Aligned_cols=186 Identities=19% Similarity=0.192 Sum_probs=124.2
Q ss_pred hCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (398)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 192 (398)
.+++++|++..+.. ..++ .+..+++|++|++++|.+...+....+++|+.|+|+++.+.+-. -+..+++|+.|+
T Consensus 40 l~~L~~L~l~~~~i--~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGV--TTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCc--cCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCCCCEEE
Confidence 35888888876432 2344 46678899999999988776644778889999999988873321 266788999999
Q ss_pred eeecCCcceeecCCCCCCceEEEecCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHh
Q 015886 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (398)
Q Consensus 193 l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (398)
+++|.....-.+..+++|+.|.+.+| .+..+. ..+++|+.|+++++...... .+..+++|+.|+++++.+.+..
T Consensus 114 l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~-- 189 (308)
T 1h6u_A 114 LTSTQITDVTPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDIS-- 189 (308)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG--
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCcCCCCh-hhcCCCCCCEEECCCCccCcCh--
Confidence 98875433223566788888888887 222222 25677888888777622211 1677788888888877765422
Q ss_pred hhhcCCCCCcEEeccCcccccccc--ccccccceEecccccc
Q 015886 271 NGISKLPLLEYLSMTKCHKLTSVR--ISSPCLKTLILECCDK 310 (398)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~L~~L~l~~c~~ 310 (398)
. +..+++|+.|+++++. ++.+. ..+++|+.|+++++..
T Consensus 190 ~-l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp G-GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEEEE
T ss_pred h-hcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCCee
Confidence 1 5567888888888763 22222 2456777777776654
No 44
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.37 E-value=1.6e-12 Score=130.16 Aligned_cols=151 Identities=9% Similarity=0.042 Sum_probs=103.2
Q ss_pred CCCeEEEEEecCCccc----------------cCCcccc--CCCCeeEEEEeccccCCC--CccccCcccceEEEEEEE-
Q 015886 114 SEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC- 172 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~- 172 (398)
+++++|+++.+..... .+|..+. .+++|++|++++|.+... .....+++|+.|+++++.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 5899999998542220 1888888 899999999999976433 567789999999999998
Q ss_pred eCHHHHHHHHh------cCccccEEEeeecCCccee----ecCCCCCCceEEEecCCCcceee--ecccCceEEEEeeee
Q 015886 173 ADDQAIASLIS------GCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTY 240 (398)
Q Consensus 173 ~~~~~l~~l~~------~cp~Le~L~l~~~~~~~~~----~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~ 240 (398)
++...+..-+. .+++|+.|++.+|... .+ .+..+++|+.|++.+|.....++ ...++|+.|+++++.
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence 66523333233 4599999999988654 33 35567889999998872211332 245677888877766
Q ss_pred ccceeEeecCCCC-CceEEeeccCCc
Q 015886 241 LFPIEVNVSSCGN-LKCLKFDFLPIE 265 (398)
Q Consensus 241 ~~~~~~~~~~~~~-L~~L~l~~~~~~ 265 (398)
.......+..+++ |++|+++++.+.
T Consensus 365 l~~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 365 ITEIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp EEECCTTSEEECTTCCEEECCSSCCS
T ss_pred cccccHhhhhhcccCcEEEccCCcCc
Confidence 3222223455666 777777666554
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.36 E-value=1.5e-11 Score=120.14 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=79.0
Q ss_pred CceEEEecCCCcceee--ecccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCch-HHHhhhhcCCCCCcEEecc
Q 015886 210 LKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMT 285 (398)
Q Consensus 210 L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~ 285 (398)
|+.|.+.++. +..+. ..+++|++|+++++.... ....++.+++|+.|+++++.+.. ..+...+..+++|+.|+++
T Consensus 304 L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 304 IKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred eeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 5555555541 12222 356677777777766211 12345667777777777777664 2233445667777777777
Q ss_pred Cccccccccc----cc----------------------cccceEeccccccc--eeccccCCCcceEEEeccce-----e
Q 015886 286 KCHKLTSVRI----SS----------------------PCLKTLILECCDKL--IQVEIETPNLSIFKYHGDLI-----S 332 (398)
Q Consensus 286 ~c~~~~~~~~----~~----------------------~~L~~L~l~~c~~~--~~~~~~~p~L~~l~~~~~~~-----~ 332 (398)
++.....++. .+ ++|+.|++++|... ......+++|+.|.+.++.. .
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH
Confidence 6532221221 22 35555555555432 11123667788888877766 2
Q ss_pred eccccccccceeeeeccc
Q 015886 333 FSSNALSLSETSLCFSSH 350 (398)
Q Consensus 333 ~~~~~~~L~~l~i~~~~~ 350 (398)
.+.+.++|+++++..+..
T Consensus 463 ~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTTTCTTCCEEECCSSCB
T ss_pred HhccCCcccEEECcCCCC
Confidence 366778888888876643
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.35 E-value=1e-13 Score=125.99 Aligned_cols=211 Identities=18% Similarity=0.108 Sum_probs=146.1
Q ss_pred CCCeEEEEEecCCccccCCcc-ccCCCCeeEEEEeccccCCC----CccccCcccceEEEEEEEeCHHHHHHHHhcCccc
Q 015886 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCADDQAIASLISGCPLI 188 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~~----~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 188 (398)
+++++|+++.+.. ..+|.. +..+++|++|+++++.+... .....+++|++|+++++.+.. +..-+..+++|
T Consensus 28 ~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred CCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence 4788888876432 356665 45789999999999876532 334468899999998887631 11115578999
Q ss_pred cEEEeeecCCcce---eecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeecc--ceeEeecCCCCCceEEe
Q 015886 189 EYLEIRSCEGLES---LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLF--PIEVNVSSCGNLKCLKF 259 (398)
Q Consensus 189 e~L~l~~~~~~~~---~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l 259 (398)
+.|+++++..... -.+..+++|+.|++.+|. +..+. ..+++|++|+++++... .....+..+++|+.|++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 9999988743321 124457899999999883 22221 25689999999888732 23345788999999999
Q ss_pred eccCCchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccce---eccccC-CCcceEEEeccce
Q 015886 260 DFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLI---QVEIET-PNLSIFKYHGDLI 331 (398)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~~---~~~~~~-p~L~~l~~~~~~~ 331 (398)
+++.+.... ...+..+++|+.|+++++. ++.+. ..+++|++|+++++.... ...... ++|+.+.+.++..
T Consensus 183 s~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 183 SQCQLEQLS-PTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTSCCCEEC-TTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCCcCCcC-HHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 988876532 2335678999999999974 33322 256899999999987643 222344 4899999988665
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.34 E-value=6.5e-14 Score=134.71 Aligned_cols=252 Identities=15% Similarity=0.146 Sum_probs=173.3
Q ss_pred HHhCCCeEEEEEecCCccc---cCCccccCCCCeeEEEEeccccCCC---CccccCc----ccceEEEEEEEeCHH---H
Q 015886 111 AIESEVKELVLVHWRSERR---NLPEIIFYVESLHVLELSYCKLQQP---SENVKLF----SLRKLALREVCADDQ---A 177 (398)
Q Consensus 111 ~~~~~l~~L~l~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~----~L~~L~L~~~~~~~~---~ 177 (398)
...+++++|+++.+..... .++..+..+++|++|+++++.+... .....++ +|++|+|++|.+++. .
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 4457999999998654332 4566677789999999999877542 1222344 799999999998653 4
Q ss_pred HHHHHhcCccccEEEeeecCCcc----eee---cCCCCCCceEEEecCCCcce-----ee---ecccCceEEEEeeeecc
Q 015886 178 IASLISGCPLIEYLEIRSCEGLE----SLD---LVNLSNLKEIILVNTSDIKR-----VE---IKTSNVNALAIHQTYLF 242 (398)
Q Consensus 178 l~~l~~~cp~Le~L~l~~~~~~~----~~~---i~~~~~L~~L~l~~~~~l~~-----~~---~~~p~L~~l~l~~~~~~ 242 (398)
+...+..+++|++|++++|.... .+. ....++|++|++.+|. +.. +. ..+++|++|+++++...
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 55667899999999999986321 111 1123689999999982 222 11 24689999999988721
Q ss_pred ce-eEee-----cCCCCCceEEeeccCCchHH---HhhhhcCCCCCcEEeccCcccccccc---------ccccccceEe
Q 015886 243 PI-EVNV-----SSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKCHKLTSVR---------ISSPCLKTLI 304 (398)
Q Consensus 243 ~~-~~~~-----~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~~~~---------~~~~~L~~L~ 304 (398)
.. ...+ ...++|++|+++++.+.+.. +...+..+++|+.|++++|. ++..+ ...++|++|+
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEE
Confidence 11 0111 13569999999999988753 45556789999999999973 33321 1468999999
Q ss_pred ccccccce-------eccccCCCcceEEEeccce----------eeccccccccceeeeecccchhhHHHHHHHHHH
Q 015886 305 LECCDKLI-------QVEIETPNLSIFKYHGDLI----------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEI 364 (398)
Q Consensus 305 l~~c~~~~-------~~~~~~p~L~~l~~~~~~~----------~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~ 364 (398)
+++|.... .....+++|+.|.++++.. .+..+.++|+++.++.+.....+...+......
T Consensus 263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence 99996532 1224578999999998776 122234699999998776555444444444433
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.34 E-value=6.5e-13 Score=121.33 Aligned_cols=222 Identities=14% Similarity=0.075 Sum_probs=143.6
Q ss_pred hhHHHHHHHHHHhccccCCCCceEEEEEeecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCCeeE
Q 015886 64 SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHV 143 (398)
Q Consensus 64 ~~~~~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~ 143 (398)
...+........ .....++.+.++..... .. ....+ ...++++.|+++.+... ..+. +..+++|++
T Consensus 19 ~~~l~~~~~~~~----~~~~~L~~L~L~~n~l~--~~---~~~~~--~~l~~L~~L~Ls~n~l~--~~~~-~~~l~~L~~ 84 (317)
T 3o53_A 19 DSSLKQALASLR----QSAWNVKELDLSGNPLS--QI---SAADL--APFTKLELLNLSSNVLY--ETLD-LESLSTLRT 84 (317)
T ss_dssp TTTHHHHHHHHH----TTGGGCSEEECTTSCCC--CC---CHHHH--TTCTTCCEEECTTSCCE--EEEE-ETTCTTCCE
T ss_pred ccchhhhHHHHh----ccCCCCCEEECcCCccC--cC---CHHHh--hCCCcCCEEECCCCcCC--cchh-hhhcCCCCE
Confidence 344555555444 12346777766543221 11 11111 22358999999874332 2233 677899999
Q ss_pred EEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcc--eeecCCCCCCceEEEecCCCc
Q 015886 144 LELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE--SLDLVNLSNLKEIILVNTSDI 221 (398)
Q Consensus 144 L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~--~~~i~~~~~L~~L~l~~~~~l 221 (398)
|++++|.+.. ....++|+.|+++++.++... ...++.|+.|++++|.... ...+..+++|+.|+++++ .+
T Consensus 85 L~Ls~n~l~~---l~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l 156 (317)
T 3o53_A 85 LDLNNNYVQE---LLVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EI 156 (317)
T ss_dssp EECCSSEEEE---EEECTTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CC
T ss_pred EECcCCcccc---ccCCCCcCEEECCCCccCCcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CC
Confidence 9999998753 234589999999998874322 2357899999999885432 234455789999999988 33
Q ss_pred ceee-----ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc-
Q 015886 222 KRVE-----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI- 295 (398)
Q Consensus 222 ~~~~-----~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~- 295 (398)
..+. ..+++|+.|+++++..... .....+++|+.|+++++.+.... ..+..+++|+.|+++++ .++.++.
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~L~~L~L~~N-~l~~l~~~ 232 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMG--PEFQSAAGVTWISLRNN-KLVLIEKA 232 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEEC--GGGGGGTTCSEEECTTS-CCCEECTT
T ss_pred CcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCcch--hhhcccCcccEEECcCC-cccchhhH
Confidence 3332 2468899999988873322 23345889999999988876521 12556789999999986 3344443
Q ss_pred --cccccceEeccccccc
Q 015886 296 --SSPCLKTLILECCDKL 311 (398)
Q Consensus 296 --~~~~L~~L~l~~c~~~ 311 (398)
.+++|+.|++++++..
T Consensus 233 ~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCCTTCCEEECTTCCCB
T ss_pred hhcCCCCCEEEccCCCcc
Confidence 4567888888877654
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.34 E-value=1.4e-12 Score=117.23 Aligned_cols=176 Identities=17% Similarity=0.122 Sum_probs=102.8
Q ss_pred ccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee---e
Q 015886 129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---D 203 (398)
Q Consensus 129 ~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~---~ 203 (398)
..+|..+ .++|++|+++++.+... ..+..+++|++|+++++.++.... ..+..+++|+.|+++++..+..+ .
T Consensus 24 ~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 24 QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp SSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred ccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH-hhcCCccCCCEEeCCCCCCccccCHHH
Confidence 3444433 35788888888766533 345677888888888776632211 12456788888888877644433 2
Q ss_pred cCCCCCCceEEEecCCCccee----eecccCceEEEEeeeeccceeE-eecCCCCCceEEeeccCCchHHHhhhhcCCCC
Q 015886 204 LVNLSNLKEIILVNTSDIKRV----EIKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPL 278 (398)
Q Consensus 204 i~~~~~L~~L~l~~~~~l~~~----~~~~p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (398)
+..+++|+.|++.++. +..+ ....++|++|+++++....... .++.+++|+.|+++++.+.... ...+..+++
T Consensus 101 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~ 178 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHS 178 (285)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTT
T ss_pred hcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCccc
Confidence 3446778888887772 2222 1245677777777665222111 2456777777777776655321 122455677
Q ss_pred CcEEeccCccccccc-c---ccccccceEecccccc
Q 015886 279 LEYLSMTKCHKLTSV-R---ISSPCLKTLILECCDK 310 (398)
Q Consensus 279 L~~L~l~~c~~~~~~-~---~~~~~L~~L~l~~c~~ 310 (398)
|+.|+++++. ++.+ + ..+++|+.|+++++..
T Consensus 179 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 179 LDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cCEEECCCCc-ccccCHhHccCcccccEeeCCCCcC
Confidence 7777777753 2222 1 1345667776666643
No 50
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.32 E-value=3.4e-12 Score=116.02 Aligned_cols=184 Identities=20% Similarity=0.168 Sum_probs=82.1
Q ss_pred CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecC
Q 015886 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~ 218 (398)
++|++|++.++.+...+....+++|+.|+|+++.+.+-.- +..+++|+.|++++|.....-.+..+++|+.|++++|
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCC
Confidence 4455555555554433344445555555555555422111 4455555555555543221112333455555555555
Q ss_pred CCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc--
Q 015886 219 SDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR-- 294 (398)
Q Consensus 219 ~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~-- 294 (398)
.+..+. ..+++|++|+++++...... .+..+++|+.|+++++.+.+. .. +..+++|+.|+++++. ++.+.
T Consensus 118 -~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~l 191 (308)
T 1h6u_A 118 -QITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL--TP-LANLSKLTTLKADDNK-ISDISPL 191 (308)
T ss_dssp -CCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCCCGGG
T ss_pred -CCCCchhhcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCcCCCC--hh-hcCCCCCCEEECCCCc-cCcChhh
Confidence 111111 13455555555555411111 144555555555555554431 11 3445555555555542 12211
Q ss_pred ccccccceEeccccccce-eccccCCCcceEEEeccce
Q 015886 295 ISSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI 331 (398)
Q Consensus 295 ~~~~~L~~L~l~~c~~~~-~~~~~~p~L~~l~~~~~~~ 331 (398)
..+++|++|++++|.... .-...+++|+.|.+.++..
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred cCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 234455555555554321 1123445555555555443
No 51
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=4.6e-12 Score=129.84 Aligned_cols=150 Identities=13% Similarity=0.105 Sum_probs=102.9
Q ss_pred CCCeEEEEEecCCccc----------------cCCcccc--CCCCeeEEEEeccccCCC--CccccCcccceEEEEEEE-
Q 015886 114 SEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC- 172 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~- 172 (398)
++++.|+++.+..... .+|..+. .+++|++|+|++|.+... .....+++|+.|+|+++.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 5899999998543321 2888877 899999999999876433 567789999999999997
Q ss_pred eCHHH----HHHH---HhcCccccEEEeeecCCccee----ecCCCCCCceEEEecCCCcceee--ecccCceEEEEeee
Q 015886 173 ADDQA----IASL---ISGCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQT 239 (398)
Q Consensus 173 ~~~~~----l~~l---~~~cp~Le~L~l~~~~~~~~~----~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~ 239 (398)
++... +..+ +..+|+|+.|++++|... .+ .+..+++|+.|++++|. +..++ ..+++|+.|+++++
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYN 605 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSS
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCC
Confidence 66522 2222 235669999999988654 33 24567888888888872 22332 25677888888777
Q ss_pred eccceeEeecCCCC-CceEEeeccCCc
Q 015886 240 YLFPIEVNVSSCGN-LKCLKFDFLPIE 265 (398)
Q Consensus 240 ~~~~~~~~~~~~~~-L~~L~l~~~~~~ 265 (398)
........+..+++ |+.|+++++.+.
T Consensus 606 ~l~~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 606 QIEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp CCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred ccccchHHHhhccccCCEEECcCCCCC
Confidence 63333334556666 777777766654
No 52
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.31 E-value=4.9e-13 Score=125.64 Aligned_cols=197 Identities=19% Similarity=0.164 Sum_probs=116.5
Q ss_pred CCCeEEEEEecCCccc---cCCccccCCCCeeEEEEeccccCCC-----Cc-------cccCcccceEEEEEEEeCHH--
Q 015886 114 SEVKELVLVHWRSERR---NLPEIIFYVESLHVLELSYCKLQQP-----SE-------NVKLFSLRKLALREVCADDQ-- 176 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~l~~~-----~~-------~~~~~~L~~L~L~~~~~~~~-- 176 (398)
+++++|+++.+..... .++..+..+++|++|+|++|.+... .. ...+++|++|+|+++.+++.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 5788888876432221 2334455678888888888644321 11 24678888888888888543
Q ss_pred -HHHHHHhcCccccEEEeeecCCcce--ee----cCCC---------CCCceEEEecCCCc-ceee------ecccCceE
Q 015886 177 -AIASLISGCPLIEYLEIRSCEGLES--LD----LVNL---------SNLKEIILVNTSDI-KRVE------IKTSNVNA 233 (398)
Q Consensus 177 -~l~~l~~~cp~Le~L~l~~~~~~~~--~~----i~~~---------~~L~~L~l~~~~~l-~~~~------~~~p~L~~ 233 (398)
.+...+..+++|+.|++++|..... .. +..+ ++|++|.+.+|.-- ..+. ..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 3444567788888888888754210 01 1112 67888888777211 1111 14567777
Q ss_pred EEEeeeeccc-----eeE-eecCCCCCceEEeeccCCchH---HHhhhhcCCCCCcEEeccCccccccc-----cc----
Q 015886 234 LAIHQTYLFP-----IEV-NVSSCGNLKCLKFDFLPIEDE---WLCNGISKLPLLEYLSMTKCHKLTSV-----RI---- 295 (398)
Q Consensus 234 l~l~~~~~~~-----~~~-~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~c~~~~~~-----~~---- 295 (398)
|+++++.... ... .+..+++|+.|+|+++.+++. .+...+..+++|+.|+|++|. ++.. +.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSK 270 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHT
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhh
Confidence 7777765221 111 345677777777777777642 233445667777777777763 2221 11
Q ss_pred -cccccceEeccccccc
Q 015886 296 -SSPCLKTLILECCDKL 311 (398)
Q Consensus 296 -~~~~L~~L~l~~c~~~ 311 (398)
..++|++|++++|...
T Consensus 271 ~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIE 287 (386)
T ss_dssp CSSCCCCEEECCSSCCB
T ss_pred ccCCCeEEEECcCCcCC
Confidence 1566777777776643
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.31 E-value=3.9e-12 Score=126.38 Aligned_cols=102 Identities=14% Similarity=0.019 Sum_probs=76.5
Q ss_pred cccCceEEEEeeeeccce-eEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc---cccccce
Q 015886 227 KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKT 302 (398)
Q Consensus 227 ~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~ 302 (398)
.+++|+.|+++++..... ...++.+++|+.|+++++.+... ......+|+|+.|++++|. +..++. .+++|++
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~ 328 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLEN 328 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC--CcccccCCCCcEEECCCCC-CCccCcccccCCCCCE
Confidence 567888888887763222 23568899999999999887652 3334568999999999973 334443 5789999
Q ss_pred EeccccccceeccccCCCcceEEEeccce
Q 015886 303 LILECCDKLIQVEIETPNLSIFKYHGDLI 331 (398)
Q Consensus 303 L~l~~c~~~~~~~~~~p~L~~l~~~~~~~ 331 (398)
|++++|....--....++|+.|.+.++.+
T Consensus 329 L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 329 LYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp EECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred EECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 99999986543356678999999998876
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.31 E-value=1.6e-12 Score=125.86 Aligned_cols=218 Identities=19% Similarity=0.154 Sum_probs=148.8
Q ss_pred CCeEEEEEecCCccccCC-ccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 115 EVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 115 ~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
+++.|+++.+.. ..++ ..+..+++|++|+|++|.+........+++|+.|+|++|.+++ +...|.|+.|++
T Consensus 35 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEEC
T ss_pred CccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEEC
Confidence 789998887432 2343 4667789999999999987644447788999999999988742 224489999999
Q ss_pred eecCCcceeecCCCCCCceEEEecCC--Ccceee-ecccCceEEEEeeeeccc-eeEee-cCCCCCceEEeeccCCchHH
Q 015886 194 RSCEGLESLDLVNLSNLKEIILVNTS--DIKRVE-IKTSNVNALAIHQTYLFP-IEVNV-SSCGNLKCLKFDFLPIEDEW 268 (398)
Q Consensus 194 ~~~~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~-~~~p~L~~l~l~~~~~~~-~~~~~-~~~~~L~~L~l~~~~~~~~~ 268 (398)
++|.... +....+++|+.|.+.+|. .+.... ..+++|+.|+++++.... ....+ ..+++|+.|+++++.+...
T Consensus 107 ~~N~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 107 ANNNISR-VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp CSSCCCC-EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred cCCcCCC-CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 9875443 333446889999999882 222222 257889999998876222 11223 3678999999998887653
Q ss_pred HhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccce--eccccCCCcceEEEeccce------eecccc
Q 015886 269 LCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI--QVEIETPNLSIFKYHGDLI------SFSSNA 337 (398)
Q Consensus 269 ~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~--~~~~~~p~L~~l~~~~~~~------~~~~~~ 337 (398)
.. ...+++|+.|+++++. ++.++. .+++|+.|+++++.... .....+++|+.+.+.++.. .++...
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 185 -KG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp -EC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred -cc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 11 2357899999999863 333332 56789999998877542 2234567888888888665 344555
Q ss_pred ccccceee
Q 015886 338 LSLSETSL 345 (398)
Q Consensus 338 ~~L~~l~i 345 (398)
+.|+.+.+
T Consensus 262 ~~L~~l~~ 269 (487)
T 3oja_A 262 QRVQTVAK 269 (487)
T ss_dssp HHHHHHHH
T ss_pred CCCcEEec
Confidence 55555554
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.29 E-value=6.1e-12 Score=129.99 Aligned_cols=96 Identities=11% Similarity=0.002 Sum_probs=63.6
Q ss_pred CCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccc---eeccccCCCcceE
Q 015886 252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKL---IQVEIETPNLSIF 324 (398)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~---~~~~~~~p~L~~l 324 (398)
++|+.|+++++.+... ....+..+++|+.|+++++. ++.+. ..+++|++|+++++... ......+++|+.|
T Consensus 266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 5677777776665432 12335667788888887753 22221 25678888888887643 2234567788888
Q ss_pred EEeccce-----eeccccccccceeeeecc
Q 015886 325 KYHGDLI-----SFSSNALSLSETSLCFSS 349 (398)
Q Consensus 325 ~~~~~~~-----~~~~~~~~L~~l~i~~~~ 349 (398)
.+.++.. ..+.++++|+.++++.+.
T Consensus 344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp ECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred ECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 8888766 456778899999997664
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.29 E-value=4.7e-12 Score=124.48 Aligned_cols=82 Identities=21% Similarity=0.125 Sum_probs=54.0
Q ss_pred CCCeEEEEEecCCccccCCcc-ccCCCCeeEEEEeccccCC---CCccccCcccceEEEEEEEe-CHHHHHHHHhcCccc
Q 015886 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQ---PSENVKLFSLRKLALREVCA-DDQAIASLISGCPLI 188 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~---~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~L 188 (398)
+++++|+++.+. ...++.. +..+++|++|+++++.+.. +.....+++|++|+++++.. +.- ....+..+++|
T Consensus 74 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L 150 (549)
T 2z81_A 74 GSLEHLDLSDNH--LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI-RRIDFAGLTSL 150 (549)
T ss_dssp TTCCEEECTTSC--CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEE
T ss_pred ccCCEEECCCCc--cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc-CHhhhhccccc
Confidence 478888777532 2344443 6677888888888887653 24567788888888888763 211 11124667888
Q ss_pred cEEEeeecCC
Q 015886 189 EYLEIRSCEG 198 (398)
Q Consensus 189 e~L~l~~~~~ 198 (398)
++|++.+|..
T Consensus 151 ~~L~L~~n~l 160 (549)
T 2z81_A 151 NELEIKALSL 160 (549)
T ss_dssp EEEEEEETTC
T ss_pred CeeeccCCcc
Confidence 8888887753
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.28 E-value=8.1e-12 Score=122.81 Aligned_cols=124 Identities=19% Similarity=0.143 Sum_probs=59.0
Q ss_pred CCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (398)
Q Consensus 115 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 192 (398)
++++|+++.+... ...|..+..+++|++|+++++.+... ..+..+++|++|+|+++.+....- ..+..+++|+.|+
T Consensus 27 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 104 (549)
T 2z81_A 27 AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLN 104 (549)
T ss_dssp TCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCEEE
T ss_pred CccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCcEEE
Confidence 5555555543211 11233444556666666666554322 234455666666666655532111 1234556666666
Q ss_pred eeecCCcc-e--eecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeee
Q 015886 193 IRSCEGLE-S--LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTY 240 (398)
Q Consensus 193 l~~~~~~~-~--~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~ 240 (398)
+++|.... . -.+..+++|+.|++.+|.....+. ..+++|++|+++++.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 66553221 0 123344566666666553233332 134555555555544
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.28 E-value=5.3e-13 Score=121.60 Aligned_cols=196 Identities=15% Similarity=0.069 Sum_probs=106.6
Q ss_pred CCCCeeEEEEeccccCCC--Ccc--ccCcccceEEEEEEEeCHH--HHHHHHh-cCccccEEEeeecCCccee--ecCCC
Q 015886 137 YVESLHVLELSYCKLQQP--SEN--VKLFSLRKLALREVCADDQ--AIASLIS-GCPLIEYLEIRSCEGLESL--DLVNL 207 (398)
Q Consensus 137 ~~~~L~~L~L~~~~l~~~--~~~--~~~~~L~~L~L~~~~~~~~--~l~~l~~-~cp~Le~L~l~~~~~~~~~--~i~~~ 207 (398)
.+++|++|+++++.+... ... ..+++|+.|+|+++.++.. .+..+.. ..++|+.|++++|...... .+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 577888888888877532 222 6788889999988887332 2222211 1378888888877543211 23345
Q ss_pred CCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCch--HHHhhhhcCCCCCcEEecc
Q 015886 208 SNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED--EWLCNGISKLPLLEYLSMT 285 (398)
Q Consensus 208 ~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~ 285 (398)
++|+.|+++++.-...+. .+....+..+++|++|+++++.+.. .....++..+++|+.|+++
T Consensus 173 ~~L~~L~Ls~N~l~~~~~----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERG----------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp SSCCEEECCSCTTCHHHH----------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred CCCCEEECCCCCcCcchH----------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 666666666552111100 0001122556666666666666552 2233444556666666666
Q ss_pred Cccccccc----cccccccceEeccccccceeccccC-CCcceEEEeccce---eeccccccccceeeeecc
Q 015886 286 KCHKLTSV----RISSPCLKTLILECCDKLIQVEIET-PNLSIFKYHGDLI---SFSSNALSLSETSLCFSS 349 (398)
Q Consensus 286 ~c~~~~~~----~~~~~~L~~L~l~~c~~~~~~~~~~-p~L~~l~~~~~~~---~~~~~~~~L~~l~i~~~~ 349 (398)
++.-.... ...+++|++|+++++..- .+.... ++|+.|.++++.. ..+...++|++++++.+.
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCT
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCceEEECCCCCCCCChhHhhCCCCCEEeccCCC
Confidence 65322211 113456666666666543 222111 4666666666655 225566777777775443
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.28 E-value=1.1e-10 Score=113.85 Aligned_cols=144 Identities=15% Similarity=0.096 Sum_probs=91.9
Q ss_pred hcCccccEEEeeecCCcc--eeecCCCCCCceEEEecCCCcc---eee---ecccCceEEEEeeeeccc-eeE-eecCCC
Q 015886 183 SGCPLIEYLEIRSCEGLE--SLDLVNLSNLKEIILVNTSDIK---RVE---IKTSNVNALAIHQTYLFP-IEV-NVSSCG 252 (398)
Q Consensus 183 ~~cp~Le~L~l~~~~~~~--~~~i~~~~~L~~L~l~~~~~l~---~~~---~~~p~L~~l~l~~~~~~~-~~~-~~~~~~ 252 (398)
..++.|+.|++++|.... .-.+..+++|+.|++++|. +. .++ ...++|++|+++++.... ... .+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 456677777776664332 1123446778888887772 22 211 256788888887776221 111 256678
Q ss_pred CCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccce---eccccCCCcceEEE
Q 015886 253 NLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI---QVEIETPNLSIFKY 326 (398)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~ 326 (398)
+|+.|+++++.+.......+ .++|+.|++++| .++.++. .+++|++|++++|.... .....+++|+.+.+
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSC---CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCcchhhhh---cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEEC
Confidence 88888888887765432221 168999999997 3444443 67899999999996541 12355788999999
Q ss_pred eccce
Q 015886 327 HGDLI 331 (398)
Q Consensus 327 ~~~~~ 331 (398)
.+++.
T Consensus 476 ~~N~~ 480 (520)
T 2z7x_B 476 HTNPW 480 (520)
T ss_dssp CSSCB
T ss_pred cCCCC
Confidence 88443
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=4.4e-12 Score=129.99 Aligned_cols=229 Identities=13% Similarity=0.109 Sum_probs=130.3
Q ss_pred CCCeEEEEEecCCccccCCc--cccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCcc-ccE
Q 015886 114 SEVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL-IEY 190 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~-Le~ 190 (398)
++++.|+++.+... .+|. .+..+++|+.|+++++.+...+....+++|+.|+|+++.+. .+..-+..++. |+.
T Consensus 548 ~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG 623 (876)
T ss_dssp TTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred CCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence 47888888875433 7787 77788888888888887763356677888888888888764 22223556777 888
Q ss_pred EEeeecCCcceee--cC--CCCCCceEEEecCC----------------------------Ccceeee----cccCceEE
Q 015886 191 LEIRSCEGLESLD--LV--NLSNLKEIILVNTS----------------------------DIKRVEI----KTSNVNAL 234 (398)
Q Consensus 191 L~l~~~~~~~~~~--i~--~~~~L~~L~l~~~~----------------------------~l~~~~~----~~p~L~~l 234 (398)
|++++|... .+. +. ..++|+.|++++|. .+..++. .+++|+.|
T Consensus 624 L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702 (876)
T ss_dssp EECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred EECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence 888877432 111 00 11224455544441 1112211 34556666
Q ss_pred EEeeeeccceeEe--------ecCCCCCceEEeeccCCchHHHhhhhc--CCCCCcEEeccCccccccccc---cccccc
Q 015886 235 AIHQTYLFPIEVN--------VSSCGNLKCLKFDFLPIEDEWLCNGIS--KLPLLEYLSMTKCHKLTSVRI---SSPCLK 301 (398)
Q Consensus 235 ~l~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~~~~~~~---~~~~L~ 301 (398)
+++++........ ..++++|+.|+|+++.+.. +...+. .+++|+.|+|+++. ++.++. .+++|+
T Consensus 703 ~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~--lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~ 779 (876)
T 4ecn_A 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS--LSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLK 779 (876)
T ss_dssp ECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC--CCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCC
T ss_pred ECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc--chHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCC
Confidence 6655541111111 1122367777777766652 222233 67777777777752 222332 556777
Q ss_pred eEeccccc------cc---eeccccCCCcceEEEeccce--eeccccccccceeeeeccc
Q 015886 302 TLILECCD------KL---IQVEIETPNLSIFKYHGDLI--SFSSNALSLSETSLCFSSH 350 (398)
Q Consensus 302 ~L~l~~c~------~~---~~~~~~~p~L~~l~~~~~~~--~~~~~~~~L~~l~i~~~~~ 350 (398)
.|+++++. .. ......+++|+.|.++++.. .-..-.++|+.++++.+..
T Consensus 780 ~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTT
T ss_pred EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCCC
Confidence 77776633 11 12234567788888777766 1001125788888866643
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.27 E-value=3e-12 Score=117.68 Aligned_cols=226 Identities=15% Similarity=0.119 Sum_probs=130.6
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
+++++|+++.+... ...|..+..+++|++|+++++.+...+... +++|++|+++++.+..-. ...+..+++|+.|++
T Consensus 78 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 78 QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEM 154 (332)
T ss_dssp TTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSSC-CTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEEC
T ss_pred CCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCccc-cccCCEEECCCCccCccC-HhHhCCCccCCEEEC
Confidence 46777776653221 112344556677777777777665332211 267777777777663111 112456777777777
Q ss_pred eecCCcc----eeecCCCCCCceEEEecCCCcceeee-cccCceEEEEeeeecccee-EeecCCCCCceEEeeccCCchH
Q 015886 194 RSCEGLE----SLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDE 267 (398)
Q Consensus 194 ~~~~~~~----~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 267 (398)
.++.... .-.+..+ +|+.|++.++ .+..++. ..++|++|+++++...... ..+..+++|+.|+++++.+...
T Consensus 155 ~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp CSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred CCCccccCCCCcccccCC-ccCEEECcCC-CCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 7764421 1112222 6777777766 2222322 2257888888777622211 2466778888888888776553
Q ss_pred HHhhhhcCCCCCcEEeccCccccccccc---cccccceEeccccccce---e-cc-----ccCCCcceEEEeccce----
Q 015886 268 WLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI---Q-VE-----IETPNLSIFKYHGDLI---- 331 (398)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~~---~-~~-----~~~p~L~~l~~~~~~~---- 331 (398)
. ...+..+++|+.|+++++ .++.++. .+++|++|+++++..-. . +. ...++|+.+.+.+...
T Consensus 233 ~-~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 233 E-NGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp C-TTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred C-hhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 2 123556788888888886 3334433 56778888888776531 0 10 1145677888777654
Q ss_pred ---eeccccccccceeee
Q 015886 332 ---SFSSNALSLSETSLC 346 (398)
Q Consensus 332 ---~~~~~~~~L~~l~i~ 346 (398)
..+..+++|+.+.+.
T Consensus 311 ~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp SCGGGGTTBCCSTTEEC-
T ss_pred cCcccccccchhhhhhcc
Confidence 445667777777774
No 62
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.27 E-value=6.8e-12 Score=115.19 Aligned_cols=226 Identities=16% Similarity=0.089 Sum_probs=141.1
Q ss_pred CCCeEEEEEecCCccccCCc-cccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 190 (398)
++++.|+++.+. ...++. .+..+++|++|+++++.+... .....+++|++|+++++.++.- . ...++.|++
T Consensus 52 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l--~--~~~~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--P--EKMPKTLQE 125 (330)
T ss_dssp TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--C--SSCCTTCCE
T ss_pred CCCeEEECCCCc--CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc--C--hhhcccccE
Confidence 477777776532 223443 456678888888888776543 4566778888888887766311 0 012367888
Q ss_pred EEeeecCCccee--ecCCCCCCceEEEecCCCc----c-eeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccC
Q 015886 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDI----K-RVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP 263 (398)
Q Consensus 191 L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l----~-~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (398)
|+++++...... .+..+++|+.|++.++..- . .....+++|++|+++++....... ...++|++|+++++.
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~L~~L~l~~n~ 203 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNK 203 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS--SCCTTCSEEECTTSC
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc--cccccCCEEECCCCc
Confidence 888876433211 2455688888888877221 1 111256788888888776322111 223788899988887
Q ss_pred CchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccc--eeccccCCCcceEEEeccce-----e
Q 015886 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKL--IQVEIETPNLSIFKYHGDLI-----S 332 (398)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~--~~~~~~~p~L~~l~~~~~~~-----~ 332 (398)
+.... ...+..+++|+.|+++++. ++.+. ..+++|++|++++|... .......++|+.|.+.++.. .
T Consensus 204 l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 204 ITKVD-AASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CCEEC-TGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CCccC-HHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChh
Confidence 76532 2335678899999998863 22222 25678999999888654 12235667888888888776 1
Q ss_pred ecc------ccccccceeeeecc
Q 015886 333 FSS------NALSLSETSLCFSS 349 (398)
Q Consensus 333 ~~~------~~~~L~~l~i~~~~ 349 (398)
.+. ....|+.+.+..+.
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSS
T ss_pred hcCCcccccccccccceEeecCc
Confidence 111 23567777776554
No 63
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.26 E-value=7.5e-12 Score=116.44 Aligned_cols=226 Identities=11% Similarity=0.004 Sum_probs=112.7
Q ss_pred CCCeeEEEEeccccCCC------CccccCc-ccceEEEEEEEeCH---HHHHHHHhcC-ccccEEEeeecCCccee----
Q 015886 138 VESLHVLELSYCKLQQP------SENVKLF-SLRKLALREVCADD---QAIASLISGC-PLIEYLEIRSCEGLESL---- 202 (398)
Q Consensus 138 ~~~L~~L~L~~~~l~~~------~~~~~~~-~L~~L~L~~~~~~~---~~l~~l~~~c-p~Le~L~l~~~~~~~~~---- 202 (398)
.++|++|++++|.+... .....++ +|++|+|++|.+++ ..+...+..+ +.|++|++++|......
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 34466666666655432 1123445 56666666665532 2333333333 66666666665422110
Q ss_pred --ecCCC-CCCceEEEecCCCcceeee--------c-ccCceEEEEeeeeccc-----eeEeecCCC-CCceEEeeccCC
Q 015886 203 --DLVNL-SNLKEIILVNTSDIKRVEI--------K-TSNVNALAIHQTYLFP-----IEVNVSSCG-NLKCLKFDFLPI 264 (398)
Q Consensus 203 --~i~~~-~~L~~L~l~~~~~l~~~~~--------~-~p~L~~l~l~~~~~~~-----~~~~~~~~~-~L~~L~l~~~~~ 264 (398)
.+..+ ++|+.|++++|. +..... . ..+|++|+++++.... ....+...+ +|++|+++++.+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 01222 566666666652 222111 1 2366666666655211 001123343 677777776666
Q ss_pred ch---HHHhhhhcCCC-CCcEEeccCcccccc-----ccc----cccccceEeccccccce-------eccccCCCcceE
Q 015886 265 ED---EWLCNGISKLP-LLEYLSMTKCHKLTS-----VRI----SSPCLKTLILECCDKLI-------QVEIETPNLSIF 324 (398)
Q Consensus 265 ~~---~~~~~~~~~~~-~L~~L~l~~c~~~~~-----~~~----~~~~L~~L~l~~c~~~~-------~~~~~~p~L~~l 324 (398)
.+ ..+...+..++ +|+.|++++|. ++. +.. ..++|++|++++|..-. ......++|+.|
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 54 23334444553 77777777753 222 111 13467777777765431 122445677777
Q ss_pred EEeccce------------eeccccccccceeeeecccchhhHHHHHHHHHHH
Q 015886 325 KYHGDLI------------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEIL 365 (398)
Q Consensus 325 ~~~~~~~------------~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~l 365 (398)
.+.++.. ..+.+.++|+.++++.+......+..+.+..+.+
T Consensus 259 ~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~~~ 311 (362)
T 3goz_A 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIREL 311 (362)
T ss_dssp EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHHHH
T ss_pred EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHHHHC
Confidence 7777661 3455677788888866654333333334433333
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.26 E-value=4.1e-11 Score=114.82 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=51.8
Q ss_pred CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecC
Q 015886 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~ 218 (398)
++|++|++++|.+...+....+++|++|+++++.+.. +. ...++|+.|++++|....--.+..+++|+.|.+.+|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 3455555555544333334445555555555554421 00 112355555555543221112333455555555554
Q ss_pred CCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCC
Q 015886 219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI 264 (398)
Q Consensus 219 ~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (398)
.+..+....++|++|+++++...... .++.+++|+.|+++++.+
T Consensus 206 -~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 206 -SLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp -CCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred -cCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcC
Confidence 22222222345555555555422111 244555555555555444
No 65
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.26 E-value=1.4e-11 Score=121.57 Aligned_cols=76 Identities=18% Similarity=0.163 Sum_probs=47.1
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC---CccccCcccceEEEEEEEeCHHHHHHHHhcCccc--
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLI-- 188 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L-- 188 (398)
++++.|+++.+.. ..+|.. .+++|++|+++++.+... .....+++|+.|+++++.+....+ ..++.|
T Consensus 100 ~~L~~L~Ls~N~l--~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L 171 (562)
T 3a79_B 100 QDLEYLDVSHNRL--QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----LPVAHLHL 171 (562)
T ss_dssp TTCCEEECTTSCC--CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----GGGTTSCE
T ss_pred CCCCEEECCCCcC--CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch----hhhhhcee
Confidence 4677777765332 245554 677888888888776532 356677888888888877744332 233444
Q ss_pred cEEEeeecC
Q 015886 189 EYLEIRSCE 197 (398)
Q Consensus 189 e~L~l~~~~ 197 (398)
+.|++.++.
T Consensus 172 ~~L~L~~n~ 180 (562)
T 3a79_B 172 SCILLDLVS 180 (562)
T ss_dssp EEEEEEESS
T ss_pred eEEEeeccc
Confidence 666666553
No 66
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.25 E-value=2.6e-11 Score=125.34 Aligned_cols=118 Identities=15% Similarity=0.101 Sum_probs=73.0
Q ss_pred cCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccc----cccccccceE
Q 015886 229 SNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV----RISSPCLKTL 303 (398)
Q Consensus 229 p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~----~~~~~~L~~L 303 (398)
++|+.|+++++.... ....+..+++|+.|+++++.+.... ...+..+++|+.|+++++. ++.+ ...+++|+.|
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEE
Confidence 567777777665211 1223567888888888888775432 2235677888888888863 2222 1256788888
Q ss_pred eccccccc---eeccccCCCcceEEEeccceeeccccccccceeeeec
Q 015886 304 ILECCDKL---IQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFS 348 (398)
Q Consensus 304 ~l~~c~~~---~~~~~~~p~L~~l~~~~~~~~~~~~~~~L~~l~i~~~ 348 (398)
+++++... ......+++|+.|.+.++....+...++|+++.+..+
T Consensus 344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN 391 (844)
T ss_dssp ECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESC
T ss_pred ECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCC
Confidence 88877542 1223456778888887766633333556666666443
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.25 E-value=3.9e-12 Score=114.27 Aligned_cols=192 Identities=16% Similarity=0.130 Sum_probs=131.8
Q ss_pred CCCeEEEEEecCCccccCC-ccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEE-eCHHHHHHHHhcCcccc
Q 015886 114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISGCPLIE 189 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le 189 (398)
+++++|+++.+.. ..++ ..+..+++|++|+++++.+... .....+++|++|+++++. +..-. ...+..+++|+
T Consensus 32 ~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred CCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence 4788888776332 2344 3456788999999999876533 456778999999999886 42211 12256789999
Q ss_pred EEEeeecCCccee--ecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccceeE-eecCCCCCceEEeecc
Q 015886 190 YLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFL 262 (398)
Q Consensus 190 ~L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 262 (398)
.|++.+|...... .+..+++|+.|++.++ .+..+. ..+++|++|+++++....... .+..+++|+.|+++++
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 9999887543321 2455789999999988 223332 257899999999886332222 3677899999999988
Q ss_pred CCchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccc
Q 015886 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKL 311 (398)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~ 311 (398)
.+.... ...+..+++|+.|+++++ .++.++ ..+++|++|++++++..
T Consensus 188 ~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 188 RVAHVH-PHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCCEEC-TTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccccC-HhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCcc
Confidence 876542 233567899999999997 333333 25678888888877653
No 68
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.24 E-value=8.8e-11 Score=115.80 Aligned_cols=123 Identities=15% Similarity=0.032 Sum_probs=66.4
Q ss_pred cccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCch-HHHhhhhcCCCCCcEEeccCc-----------------
Q 015886 227 KTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMTKC----------------- 287 (398)
Q Consensus 227 ~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c----------------- 287 (398)
..++|++|+++++.... ....++.+++|+.|+++++.+.. ..+...+..+++|+.|+++++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 44556666666554111 11234555666666666555543 122233444555555555554
Q ss_pred --------cccccccccc-cccceEeccccccc--eeccccCCCcceEEEeccce-----eeccccccccceeeeecc
Q 015886 288 --------HKLTSVRISS-PCLKTLILECCDKL--IQVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS 349 (398)
Q Consensus 288 --------~~~~~~~~~~-~~L~~L~l~~c~~~--~~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~ 349 (398)
.-...++... ++|+.|+++++..- ..-...+++|+.|.+.++.. ..+...++|+.+++..+.
T Consensus 431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 2212222222 46777777766432 11123567888888888776 336678888888887664
No 69
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.24 E-value=3.4e-12 Score=127.66 Aligned_cols=226 Identities=15% Similarity=0.143 Sum_probs=128.4
Q ss_pred CCCeEEEEEecCCccccCCc--cccCCCCeeEEEEeccccC-CCCccccCcccceEEEEEEEeCHHHHHHHHhcCcc-cc
Q 015886 114 SEVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPL-IE 189 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~l~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~-Le 189 (398)
+++++|+++.+... .+|. .+..+++|++|+++++.+. ..+....+++|+.|+++++.+. .+..-+..++. |+
T Consensus 305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVE 380 (636)
T ss_dssp GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCC
T ss_pred CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccCc
Confidence 68999988875433 7887 7888899999999998775 3345667788888888887764 22222556677 88
Q ss_pred EEEeeecCCcceee--cC--CCCCCceEEEecCC------------------------------Ccceeee----cccCc
Q 015886 190 YLEIRSCEGLESLD--LV--NLSNLKEIILVNTS------------------------------DIKRVEI----KTSNV 231 (398)
Q Consensus 190 ~L~l~~~~~~~~~~--i~--~~~~L~~L~l~~~~------------------------------~l~~~~~----~~p~L 231 (398)
.|++++|... .+. +. .+++|+.|++++|. .+..+.. .+++|
T Consensus 381 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L 459 (636)
T 4eco_A 381 NLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459 (636)
T ss_dssp EEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC
T ss_pred EEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC
Confidence 8888776432 111 11 12245555555441 1111211 23555
Q ss_pred eEEEEeeeeccceeEe--------ecCCCCCceEEeeccCCchHHHhhhhc--CCCCCcEEeccCccccccccc---ccc
Q 015886 232 NALAIHQTYLFPIEVN--------VSSCGNLKCLKFDFLPIEDEWLCNGIS--KLPLLEYLSMTKCHKLTSVRI---SSP 298 (398)
Q Consensus 232 ~~l~l~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~~~~~~~---~~~ 298 (398)
++|+++++........ +..+++|+.|+++++.+.. +...+. .+++|+.|+++++. ++.++. .++
T Consensus 460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~ 536 (636)
T 4eco_A 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSS 536 (636)
T ss_dssp SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB--CCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCS
T ss_pred CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc--cChhhhhccCCCcCEEECCCCC-CCCcChhhhcCC
Confidence 5555555441111110 1122267777777666652 222232 66777777777753 222332 456
Q ss_pred ccceEeccccc------cce---eccccCCCcceEEEeccce----eeccccccccceeeeecc
Q 015886 299 CLKTLILECCD------KLI---QVEIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSS 349 (398)
Q Consensus 299 ~L~~L~l~~c~------~~~---~~~~~~p~L~~l~~~~~~~----~~~~~~~~L~~l~i~~~~ 349 (398)
+|+.|+++++. ... .....+++|+.|.++++.. ..+ .++|+.++++.+.
T Consensus 537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~--~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNP 598 (636)
T ss_dssp SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC--CTTCCEEECCSCT
T ss_pred CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhH--hCcCCEEECcCCC
Confidence 77777775533 111 2234567777777777666 111 2577777776664
No 70
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.24 E-value=9.7e-12 Score=125.53 Aligned_cols=167 Identities=19% Similarity=0.090 Sum_probs=81.4
Q ss_pred hcCccccEEEeeecCCcce---eecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeec---cceeEeecCCC
Q 015886 183 SGCPLIEYLEIRSCEGLES---LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYL---FPIEVNVSSCG 252 (398)
Q Consensus 183 ~~cp~Le~L~l~~~~~~~~---~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~---~~~~~~~~~~~ 252 (398)
..+++|+.|++.+|..... ..+..+++|+.|++.+|. +..+. ..+|+|+.|+++++.. ......+..++
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 4455666666655543221 123334556666665551 11111 1345555555554431 11122345566
Q ss_pred CCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccc------------cccccccceEeccccccce---ecccc
Q 015886 253 NLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV------------RISSPCLKTLILECCDKLI---QVEIE 317 (398)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~------------~~~~~~L~~L~l~~c~~~~---~~~~~ 317 (398)
+|+.|+++++.+... ....+..+++|+.|+++++. ++.+ ...+++|+.|+++++.... .....
T Consensus 481 ~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 481 NLTILDLSNNNIANI-NDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp TCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCEEECCCCCCCcC-ChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 666666666655431 12224456666666666642 2222 1234566666666654321 12344
Q ss_pred CCCcceEEEeccce-----eeccccccccceeeeecccch
Q 015886 318 TPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLM 352 (398)
Q Consensus 318 ~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~~~~ 352 (398)
+++|+.+.+++... ..+.++++|++++++.+....
T Consensus 559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 55666666665554 334455666666665554333
No 71
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.23 E-value=1.3e-11 Score=111.18 Aligned_cols=163 Identities=18% Similarity=0.193 Sum_probs=98.2
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
++++.|.++.+.. ..++ .+..+++|++|+++++.+...+....+++|+.|+++++.+++- .. +..+++|+.|++
T Consensus 46 ~~L~~L~l~~~~i--~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEEC
T ss_pred CcccEEEccCCCc--ccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEEC
Confidence 4778777765432 2233 3556788888888888776554467778888888888777331 11 567788888888
Q ss_pred eecCCcceeecCCCCCCceEEEecCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhh
Q 015886 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271 (398)
Q Consensus 194 ~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (398)
++|....--.+..+++|+.|++++| .+..+. ..+++|+.|+++++...... .+..+++|+.|+++++.+.+. ..
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~L~~N~i~~l--~~ 195 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL--RA 195 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBC--GG
T ss_pred CCCcCCCChhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCCccccch-hhcCCCccCEEECCCCcCCCC--hh
Confidence 7764332222444677777777776 222221 24566777777666522111 156666677777766665542 12
Q ss_pred hhcCCCCCcEEeccCc
Q 015886 272 GISKLPLLEYLSMTKC 287 (398)
Q Consensus 272 ~~~~~~~L~~L~l~~c 287 (398)
+..+++|+.|+++++
T Consensus 196 -l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 196 -LAGLKNLDVLELFSQ 210 (291)
T ss_dssp -GTTCTTCSEEEEEEE
T ss_pred -hccCCCCCEEECcCC
Confidence 455666666666664
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.21 E-value=2.8e-11 Score=122.17 Aligned_cols=53 Identities=15% Similarity=0.035 Sum_probs=28.0
Q ss_pred ccccceEeccccccce---eccccCCCcceEEEeccce-e------------eccccccccceeeeecc
Q 015886 297 SPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-S------------FSSNALSLSETSLCFSS 349 (398)
Q Consensus 297 ~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-~------------~~~~~~~L~~l~i~~~~ 349 (398)
+++|+.|+++++.... .....+++|+.|.++++.. . .+.++++|+.++++.+.
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 4456666665554321 1224455666666666544 1 14556666666665543
No 73
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.20 E-value=1.9e-11 Score=120.92 Aligned_cols=165 Identities=18% Similarity=0.175 Sum_probs=119.7
Q ss_pred hCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (398)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 192 (398)
..+|+.|.++.+.. ..++ .+..+++|+.|+|++|.+...+....+++|+.|+|++|.+.+- . -+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCC--CCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCC--CCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEE
Confidence 45788887765432 2333 4667899999999999887665578899999999999988432 1 267889999999
Q ss_pred eeecCCcceeecCCCCCCceEEEecCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHh
Q 015886 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (398)
Q Consensus 193 l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (398)
|++|.....-.+..+++|+.|.+++| .+..+. ..+++|+.|+++++....... +..+++|+.|+|+++.+.+. .
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~ 191 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--R 191 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--G
T ss_pred ecCCCCCCCccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--h
Confidence 99886443223556789999999988 222222 267889999998887322212 78889999999998887663 2
Q ss_pred hhhcCCCCCcEEeccCcc
Q 015886 271 NGISKLPLLEYLSMTKCH 288 (398)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~ 288 (398)
.+..+++|+.|+|++|.
T Consensus 192 -~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 192 -ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -GGTTCTTCSEEECCSEE
T ss_pred -HHccCCCCCEEEccCCc
Confidence 36678999999998863
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.19 E-value=5.8e-12 Score=114.60 Aligned_cols=217 Identities=14% Similarity=0.065 Sum_probs=108.8
Q ss_pred CCeEEEEEecCCccccCCcc--ccCCCCeeEEEEeccccCCC--Ccc--ccCcccceEEEEEEEeCHHH--HH-HHHhcC
Q 015886 115 EVKELVLVHWRSERRNLPEI--IFYVESLHVLELSYCKLQQP--SEN--VKLFSLRKLALREVCADDQA--IA-SLISGC 185 (398)
Q Consensus 115 ~l~~L~l~~~~~~~~~l~~~--~~~~~~L~~L~L~~~~l~~~--~~~--~~~~~L~~L~L~~~~~~~~~--l~-~l~~~c 185 (398)
.++.+.+.........+... ....++|++|++++|.+... ... ..+++|++|+|+++.++... +. .-+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 67777776533222222111 12246699999999877533 222 67889999999998884311 11 113478
Q ss_pred ccccEEEeeecCCccee--ecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccC
Q 015886 186 PLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP 263 (398)
Q Consensus 186 p~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (398)
++|+.|++++|...... .+..+++|++|+++++....... .+....++.+++|++|+++++.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG----------------LMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH----------------HHTTSCTTSSCCCCSCBCCSSC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh----------------hhHHHhhhcCCCCCEEECCCCC
Confidence 88888888887543211 23345677777776663211100 0000112344555555555555
Q ss_pred Cch--HHHhhhhcCCCCCcEEeccCcccccccc---cc---ccccceEeccccccceecc-ccCCCcceEEEeccce---
Q 015886 264 IED--EWLCNGISKLPLLEYLSMTKCHKLTSVR---IS---SPCLKTLILECCDKLIQVE-IETPNLSIFKYHGDLI--- 331 (398)
Q Consensus 264 ~~~--~~~~~~~~~~~~L~~L~l~~c~~~~~~~---~~---~~~L~~L~l~~c~~~~~~~-~~~p~L~~l~~~~~~~--- 331 (398)
+.. .....++..+++|+.|+++++.-....+ .. +++|++|+++++..- .+. ...++|+.|.++++..
T Consensus 209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 209 METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRA 287 (310)
T ss_dssp CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSC
T ss_pred CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCC
Confidence 432 1112223445555555555542111111 11 145555555554432 111 1124555555555544
Q ss_pred eeccccccccceeeeec
Q 015886 332 SFSSNALSLSETSLCFS 348 (398)
Q Consensus 332 ~~~~~~~~L~~l~i~~~ 348 (398)
......++|++++++.+
T Consensus 288 ~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 288 PQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCTTSCCCCSCEECSST
T ss_pred chhhhCCCccEEECcCC
Confidence 23455666777766544
No 75
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.4e-11 Score=114.17 Aligned_cols=212 Identities=18% Similarity=0.144 Sum_probs=102.3
Q ss_pred CCCeEEEEEecCCccccC-CccccCCCCeeEEEEeccccCCCC--ccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886 114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQPS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 190 (398)
++++.|+++.+.. ..+ +..+..+++|++|+++++.+...+ ....+++|++|+++++.+..-.....+..+++|+.
T Consensus 76 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 76 VNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence 4666666654321 222 233555667777777776665432 24556777777777665531110012455677777
Q ss_pred EEeeecCCccee---ecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccceeE-eecCCCCCceEEeecc
Q 015886 191 LEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFL 262 (398)
Q Consensus 191 L~l~~~~~~~~~---~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 262 (398)
|++.+|..+..+ .+..+++|+.|++.+|. +..+. ...++|++|+++++....... .+..+++|+.|+++++
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 777766444333 23345666667666662 22221 134566666666555211111 1233566666666665
Q ss_pred CCchHHHhh--hhcCCCCCcEEeccCcccc----cccc---ccccccceEeccccccce---eccccCCCcceEEEec
Q 015886 263 PIEDEWLCN--GISKLPLLEYLSMTKCHKL----TSVR---ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHG 328 (398)
Q Consensus 263 ~~~~~~~~~--~~~~~~~L~~L~l~~c~~~----~~~~---~~~~~L~~L~l~~c~~~~---~~~~~~p~L~~l~~~~ 328 (398)
.+....... .....+.++.+++..+... ..++ ..+++|+.|+++++..-. .+...+++|+.+.+.+
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeC
Confidence 544311110 1123445555555553111 1111 134556666665554321 1123455666666655
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.18 E-value=3.3e-12 Score=116.35 Aligned_cols=206 Identities=16% Similarity=0.068 Sum_probs=137.4
Q ss_pred CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCH-----HHHHHH--HhcCccccEEEeeecCCccee--e--cCCC
Q 015886 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADD-----QAIASL--ISGCPLIEYLEIRSCEGLESL--D--LVNL 207 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~-----~~l~~l--~~~cp~Le~L~l~~~~~~~~~--~--i~~~ 207 (398)
++|+.|++.++.+..+... ...|+.|+|+++.+.. ...... ...+++|++|++++|.....+ . +..+
T Consensus 43 ~~L~~l~l~~n~l~~p~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTEADLGQF--TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTTCCCHHH--HHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeecccccccHHHH--HHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 4566667777666222111 1238888888777622 111111 236899999999998654322 2 2567
Q ss_pred CCCceEEEecCCCcceee---ecc-----cCceEEEEeeeecccee-EeecCCCCCceEEeeccCCchH-HH-hhh-hcC
Q 015886 208 SNLKEIILVNTSDIKRVE---IKT-----SNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDE-WL-CNG-ISK 275 (398)
Q Consensus 208 ~~L~~L~l~~~~~l~~~~---~~~-----p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~-~~~-~~~ 275 (398)
++|+.|+++++ .+..+. ... ++|++|+++++...... ..++.+++|++|+++++.+... .+ ..+ +..
T Consensus 121 ~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 99999999998 222221 122 89999999998733322 3567899999999999986553 22 222 278
Q ss_pred CCCCcEEeccCccccc---cccc----cccccceEeccccccce----eccccCCCcceEEEeccce----eeccccccc
Q 015886 276 LPLLEYLSMTKCHKLT---SVRI----SSPCLKTLILECCDKLI----QVEIETPNLSIFKYHGDLI----SFSSNALSL 340 (398)
Q Consensus 276 ~~~L~~L~l~~c~~~~---~~~~----~~~~L~~L~l~~c~~~~----~~~~~~p~L~~l~~~~~~~----~~~~~~~~L 340 (398)
+++|+.|+++++. ++ .+.. .+++|++|+++++.... ......++|+.|.++++.. ..+. ++|
T Consensus 200 l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L 276 (312)
T 1wwl_A 200 FPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKL 276 (312)
T ss_dssp CTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEE
T ss_pred CCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCc
Confidence 9999999999973 33 2222 45899999999987653 2224468999999999877 2222 799
Q ss_pred cceeeeeccc
Q 015886 341 SETSLCFSSH 350 (398)
Q Consensus 341 ~~l~i~~~~~ 350 (398)
++++++.+..
T Consensus 277 ~~L~Ls~N~l 286 (312)
T 1wwl_A 277 SVLDLSYNRL 286 (312)
T ss_dssp EEEECCSSCC
T ss_pred eEEECCCCCC
Confidence 9999977754
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.18 E-value=3.6e-11 Score=104.95 Aligned_cols=166 Identities=18% Similarity=0.142 Sum_probs=75.2
Q ss_pred CeeEEEEeccccCCC--CccccCcccceEEEEEEE-eCHHHHHHHHhcCccccEEEeeecCCcceee---cCCCCCCceE
Q 015886 140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISGCPLIEYLEIRSCEGLESLD---LVNLSNLKEI 213 (398)
Q Consensus 140 ~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~---i~~~~~L~~L 213 (398)
+|++|+++++.+... ..+..+++|++|+++++. ++.-. ...+..+++|+.|++.+|..+..+. +..+++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 566666666655432 234456666666666664 31100 0113455666666666533333332 2234556666
Q ss_pred EEecCCCcceee--ecccCce---EEEEeee-ecccee-EeecCCCCCc-eEEeeccCCchHHHhhhhcCCCCCcEEecc
Q 015886 214 ILVNTSDIKRVE--IKTSNVN---ALAIHQT-YLFPIE-VNVSSCGNLK-CLKFDFLPIEDEWLCNGISKLPLLEYLSMT 285 (398)
Q Consensus 214 ~l~~~~~l~~~~--~~~p~L~---~l~l~~~-~~~~~~-~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 285 (398)
++.++ .+..++ ...++|+ +|+++++ ...... ..+..+++|+ .|+++++.+..- ....+.. ++|+.|+++
T Consensus 111 ~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-QGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-CTTTTTT-CEEEEEECT
T ss_pred eCCCC-CCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-CHhhcCC-CCCCEEEcC
Confidence 66555 111111 1333444 5555554 211111 1234555565 666655554421 1111222 456666665
Q ss_pred Cccccccccc----cc-cccceEeccccc
Q 015886 286 KCHKLTSVRI----SS-PCLKTLILECCD 309 (398)
Q Consensus 286 ~c~~~~~~~~----~~-~~L~~L~l~~c~ 309 (398)
++..++.++. .+ ++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 5533333322 23 455555555543
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.16 E-value=2.5e-11 Score=108.37 Aligned_cols=136 Identities=15% Similarity=0.153 Sum_probs=77.2
Q ss_pred cccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--e
Q 015886 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (398)
Q Consensus 128 ~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~ 203 (398)
...+|..+ .++|++|+++++.+... .....+++|++|+++++.+..-.. ..+..+++|+.|+++++...... .
T Consensus 19 l~~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 19 FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CSSCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccCccChhh
Confidence 34455543 25688888888876533 356677888888888776632111 12456778888888776432211 2
Q ss_pred cCCCCCCceEEEecCC--Ccceee-ecccCceEEEEeeeeccc--eeEeecCCCCCceEEeeccCCch
Q 015886 204 LVNLSNLKEIILVNTS--DIKRVE-IKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIED 266 (398)
Q Consensus 204 i~~~~~L~~L~l~~~~--~l~~~~-~~~p~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~ 266 (398)
+..+++|+.|.+.++. .+.... ..+++|++|+++++.... ....+..+++|++|+++++.+..
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 3446777777777661 111111 145566666666555221 12244556666666666665543
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.16 E-value=3.1e-10 Score=112.45 Aligned_cols=197 Identities=16% Similarity=0.054 Sum_probs=133.9
Q ss_pred hCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (398)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 192 (398)
.++++.|+++.+.. ..+|. ..++|++|++++|.+...+. .+++|+.|++++|.++. +-...++|+.|+
T Consensus 80 l~~L~~L~Ls~N~l--~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~-----lp~~l~~L~~L~ 147 (622)
T 3g06_A 80 PPELRTLEVSGNQL--TSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTS-----LPVLPPGLQELS 147 (622)
T ss_dssp CTTCCEEEECSCCC--SCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSC-----CCCCCTTCCEEE
T ss_pred CCCCCEEEcCCCcC--CcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCc-----CCCCCCCCCEEE
Confidence 36999999987543 35665 56899999999998765333 67788888888776632 112347788888
Q ss_pred eeecCCcc---------eeec---------CCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCC
Q 015886 193 IRSCEGLE---------SLDL---------VNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNL 254 (398)
Q Consensus 193 l~~~~~~~---------~~~i---------~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L 254 (398)
+++|.... .+.+ ..+++|+.|++++| .+..+....++|+.|+++++..... -..+++|
T Consensus 148 Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l---~~~~~~L 223 (622)
T 3g06_A 148 VSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSL---PALPSGL 223 (622)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSC---CCCCTTC
T ss_pred CcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCC-CCCCCCCccchhhEEECcCCccccc---CCCCCCC
Confidence 87763221 1100 11256666666665 3333433456777777776652211 1235889
Q ss_pred ceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccccccccceEeccccccc--eeccccCCCcceEEEeccce
Q 015886 255 KCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKL--IQVEIETPNLSIFKYHGDLI 331 (398)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~~--~~~~~~~p~L~~l~~~~~~~ 331 (398)
+.|+++++.+.. +...+++|+.|+++++ .++.++..+++|++|++++|... ......+++|+.|.+.++..
T Consensus 224 ~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 224 KELIVSGNRLTS-----LPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CEEECCSSCCSC-----CCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CEEEccCCccCc-----CCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 999999988765 2266799999999997 56677778889999999998654 22346778999999988776
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.16 E-value=5.6e-11 Score=105.82 Aligned_cols=79 Identities=22% Similarity=0.127 Sum_probs=42.0
Q ss_pred CCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEE
Q 015886 139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII 214 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~ 214 (398)
++|++|+++++.+... ..+..+++|++|+|+++.++.-. ...+..+++|+.|++.++...... .+..+++|+.|.
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 5677777777766543 24556677777777766552110 112345666666666665322110 122345555555
Q ss_pred EecC
Q 015886 215 LVNT 218 (398)
Q Consensus 215 l~~~ 218 (398)
+.++
T Consensus 116 l~~n 119 (270)
T 2o6q_A 116 LDRN 119 (270)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5554
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.16 E-value=2.8e-11 Score=110.08 Aligned_cols=202 Identities=18% Similarity=0.226 Sum_probs=128.6
Q ss_pred ChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccc--cCCCCeeEEEEeccccCCC------CccccCcccceEEEEEE
Q 015886 100 NASLAGRCLGLAIESEVKELVLVHWRSERRNLPEII--FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREV 171 (398)
Q Consensus 100 ~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~l~~~------~~~~~~~~L~~L~L~~~ 171 (398)
....+..........++++|+++.+.. ....|..+ ...++|++|+++++.+... .....+++|++|+|+++
T Consensus 77 ~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n 155 (310)
T 4glp_A 77 PAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA 155 (310)
T ss_dssp BHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred CHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence 344555556666667899999987532 23444444 6789999999999988643 12236899999999999
Q ss_pred EeCHHHHHHHHhcCccccEEEeeecCCcce------eecCCCCCCceEEEecCCCcceee-------ecccCceEEEEee
Q 015886 172 CADDQAIASLISGCPLIEYLEIRSCEGLES------LDLVNLSNLKEIILVNTSDIKRVE-------IKTSNVNALAIHQ 238 (398)
Q Consensus 172 ~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~------~~i~~~~~L~~L~l~~~~~l~~~~-------~~~p~L~~l~l~~ 238 (398)
.+.... ...+..+++|+.|++++|..... .....+++|+.|++++| .+..+. ...++|++|++++
T Consensus 156 ~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 156 HSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp SSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred Ccchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCC
Confidence 883221 12356789999999999975421 22345789999999988 332221 2457788888877
Q ss_pred eeccce-eEeecCC---CCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccc--ccccccccceEeccccc
Q 015886 239 TYLFPI-EVNVSSC---GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS--VRISSPCLKTLILECCD 309 (398)
Q Consensus 239 ~~~~~~-~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~--~~~~~~~L~~L~l~~c~ 309 (398)
+..... ...+..+ ++|++|+++++.+.. +...+ +++|+.|+++++. ++. ....+++|+.|++++..
T Consensus 234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~--~~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGL--PAKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCC--CSCCSCEECCSCC-CCSCCCTTSCCCCSCEECSSTT
T ss_pred CCCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhhh--cCCCCEEECCCCc-CCCCchhhhCCCccEEECcCCC
Confidence 762221 1223333 678888887777652 11111 3677777777752 222 22345666666666554
No 82
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.16 E-value=3.9e-11 Score=101.51 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=79.7
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
+++++|+++.+... .+| .+..+++|++|++++|.+...+....+++|++|+++++.+++..... +..+|+|+.|++
T Consensus 44 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEe
Confidence 46777777653322 344 35566777777777775555455556667777777666654322222 345666666666
Q ss_pred eecCCcc--eeecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhh
Q 015886 194 RSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271 (398)
Q Consensus 194 ~~~~~~~--~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (398)
++|.... .-.+..+++|+.|++++|..+..+. .+..+++|+.|+++++.+.+..
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---------------------~l~~l~~L~~L~l~~n~i~~~~--- 175 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---------------------PLKTLPELKSLNIQFDGVHDYR--- 175 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---------------------GGGGCSSCCEEECTTBCCCCCT---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---------------------hhcCCCCCCEEECCCCCCcChH---
Confidence 6654332 1123334555555555552122221 3455666666666666655421
Q ss_pred hhcCCCCCcEEeccCc
Q 015886 272 GISKLPLLEYLSMTKC 287 (398)
Q Consensus 272 ~~~~~~~L~~L~l~~c 287 (398)
.+..+++|+.|++++.
T Consensus 176 ~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp TGGGCSSCCEEEECBC
T ss_pred HhccCCCCCEEEeeCc
Confidence 3455666777766663
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.16 E-value=1.3e-11 Score=115.88 Aligned_cols=197 Identities=16% Similarity=0.119 Sum_probs=130.2
Q ss_pred CCCeEEEEEecCCc--cccCCccc-------cCCCCeeEEEEeccccCCC------CccccCcccceEEEEEEEeCHHH-
Q 015886 114 SEVKELVLVHWRSE--RRNLPEII-------FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCADDQA- 177 (398)
Q Consensus 114 ~~l~~L~l~~~~~~--~~~l~~~~-------~~~~~L~~L~L~~~~l~~~------~~~~~~~~L~~L~L~~~~~~~~~- 177 (398)
++++.|+++.+... ...+|..+ ..+++|++|+|+++.+... .....+++|+.|+|++|.+++..
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 47888888764221 11233332 5678899999998887652 24466788999999988885443
Q ss_pred --HHHHHhcC---------ccccEEEeeecCCc-cee-----ecCCCCCCceEEEecCCCcc--------e-eeecccCc
Q 015886 178 --IASLISGC---------PLIEYLEIRSCEGL-ESL-----DLVNLSNLKEIILVNTSDIK--------R-VEIKTSNV 231 (398)
Q Consensus 178 --l~~l~~~c---------p~Le~L~l~~~~~~-~~~-----~i~~~~~L~~L~l~~~~~l~--------~-~~~~~p~L 231 (398)
+...+..+ +.|+.|++++|... ..+ .+..+++|+.|.+.+|. +. . ....+++|
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCc
Confidence 33334444 88999999887543 111 22346789999998882 22 1 12257889
Q ss_pred eEEEEeeeec-----cceeEeecCCCCCceEEeeccCCchHHHh---hhhc--CCCCCcEEeccCccccc----cccc--
Q 015886 232 NALAIHQTYL-----FPIEVNVSSCGNLKCLKFDFLPIEDEWLC---NGIS--KLPLLEYLSMTKCHKLT----SVRI-- 295 (398)
Q Consensus 232 ~~l~l~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~--~~~~L~~L~l~~c~~~~----~~~~-- 295 (398)
++|+++++.. ......+..+++|++|+++++.+.+.... ..+. .+++|+.|++++|..-. .++.
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 9999988772 22223467889999999999988775433 3332 38999999999974322 1333
Q ss_pred --cccccceEeccccccc
Q 015886 296 --SSPCLKTLILECCDKL 311 (398)
Q Consensus 296 --~~~~L~~L~l~~c~~~ 311 (398)
.+++|++|++++|...
T Consensus 299 ~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHCTTCCEEECTTSBSC
T ss_pred HhcCCCceEEEccCCcCC
Confidence 3588899988887753
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.15 E-value=4.1e-11 Score=106.83 Aligned_cols=39 Identities=28% Similarity=0.220 Sum_probs=18.7
Q ss_pred ccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEe
Q 015886 135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA 173 (398)
Q Consensus 135 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~ 173 (398)
+..+++|++|+++++.+...+....+++|++|+|+++.+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL 97 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCC
T ss_pred cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCcc
Confidence 334455555555555444333344444555555544443
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.15 E-value=1.1e-11 Score=110.47 Aligned_cols=182 Identities=18% Similarity=0.148 Sum_probs=128.6
Q ss_pred CCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEE
Q 015886 137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII 214 (398)
Q Consensus 137 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~ 214 (398)
..++|+.|.+.++.+...+....+++|+.|+++++.+.+- . -+..+++|+.|++.+|...... .+..+++|+.|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3577888999988877666778899999999999888432 1 3678899999999988543222 145578999999
Q ss_pred EecCCCcceee----ecccCceEEEEeeeecccee-EeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccc
Q 015886 215 LVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK 289 (398)
Q Consensus 215 l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 289 (398)
+.+| .+..+. ..+++|++|+++++...... ..++.+++|+.|+++++.+... ....+..+++|+.|+++++.
T Consensus 116 L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~- 192 (272)
T 3rfs_A 116 LVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQ- 192 (272)
T ss_dssp CTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-
T ss_pred CCCC-cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCc-
Confidence 9988 233332 25689999999988632221 1257789999999998887642 23345678999999999973
Q ss_pred ccccc----ccccccceEeccccccceeccccCCCcceEEEec
Q 015886 290 LTSVR----ISSPCLKTLILECCDKLIQVEIETPNLSIFKYHG 328 (398)
Q Consensus 290 ~~~~~----~~~~~L~~L~l~~c~~~~~~~~~~p~L~~l~~~~ 328 (398)
++.+. ..+++|++|++++++.. ..+|+|+.+...+
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEWI 231 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBC----CCTTTTHHHHHHH
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcc----ccCcHHHHHHHHH
Confidence 33332 25789999999988654 3355666655443
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.15 E-value=8.7e-11 Score=102.51 Aligned_cols=192 Identities=13% Similarity=0.112 Sum_probs=126.8
Q ss_pred CCCeEEEEEecCCccccCCc-cccCCCCeeEEEEeccc-cCCC--CccccCcccceEEEEE-EEeCHHHHHHHHhcCccc
Q 015886 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCK-LQQP--SENVKLFSLRKLALRE-VCADDQAIASLISGCPLI 188 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-l~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~L 188 (398)
.++++|+++.+. ...++. .+..+++|++|+++++. +... ..+..+++|++|++++ +.+..-. ...+..+++|
T Consensus 31 ~~l~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETH--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCC--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTC
T ss_pred CcccEEEEeCCc--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCC
Confidence 378888888643 234454 45568899999999986 5432 3567889999999988 5553111 1224678999
Q ss_pred cEEEeeecCCcceeecCCCCCCc---eEEEecCCCcceeee----cccCce-EEEEeeeeccceeEeecCCCCCceEEee
Q 015886 189 EYLEIRSCEGLESLDLVNLSNLK---EIILVNTSDIKRVEI----KTSNVN-ALAIHQTYLFPIEVNVSSCGNLKCLKFD 260 (398)
Q Consensus 189 e~L~l~~~~~~~~~~i~~~~~L~---~L~l~~~~~l~~~~~----~~p~L~-~l~l~~~~~~~~~~~~~~~~~L~~L~l~ 260 (398)
+.|++.+|....--.+..+++|+ .|++.++..+..+.. .+++|+ .++++++.........-..++|+.|+++
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 99999988543211244456676 999988755555543 467899 9999887632221112223789999999
Q ss_pred ccC-CchHHHhhhhcCC-CCCcEEeccCccccccccc-cccccceEecccccc
Q 015886 261 FLP-IEDEWLCNGISKL-PLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDK 310 (398)
Q Consensus 261 ~~~-~~~~~~~~~~~~~-~~L~~L~l~~c~~~~~~~~-~~~~L~~L~l~~c~~ 310 (398)
++. +... ....+..+ ++|+.|+++++ .++.++. .+++|+.|++.++..
T Consensus 188 ~n~~l~~i-~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 188 KNKYLTVI-DKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp TCTTCCEE-CTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC--
T ss_pred CCCCcccC-CHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCccC
Confidence 884 6532 22345667 99999999995 4445544 578899998887753
No 87
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.14 E-value=3.9e-11 Score=110.16 Aligned_cols=226 Identities=17% Similarity=0.062 Sum_probs=119.9
Q ss_pred CCCeEEEEEecCCccccC-CccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886 114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 190 (398)
++++.|+++.+.. ..+ +..+..+++|++|+++++.+... .....+++|++|+++++.+.. +.. ...++|++
T Consensus 54 ~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVE 127 (332)
T ss_dssp TTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCE
T ss_pred CCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCE
Confidence 3566665554321 122 22445556666666666655322 334556666666666655421 000 11256666
Q ss_pred EEeeecCCcce--eecCCCCCCceEEEecCCC----cceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCC
Q 015886 191 LEIRSCEGLES--LDLVNLSNLKEIILVNTSD----IKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI 264 (398)
Q Consensus 191 L~l~~~~~~~~--~~i~~~~~L~~L~l~~~~~----l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (398)
|++.++..... -.+..+++|+.|++.++.. ...-.....+|++|+++++....... ...++|++|+++++.+
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~--~~~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLNELHLDHNKI 205 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCS--SSCSSCSCCBCCSSCC
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCc--cccCCCCEEECCCCcC
Confidence 66665533211 1133456666666666521 00111111256666666555221111 1225788888887776
Q ss_pred chHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEeccccccc--eeccccCCCcceEEEeccce-----ee
Q 015886 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKL--IQVEIETPNLSIFKYHGDLI-----SF 333 (398)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~~--~~~~~~~p~L~~l~~~~~~~-----~~ 333 (398)
..... ..+..+++|+.|+++++. ++.+. ..+++|++|++++|... ......+++|+.|.+.++.. ..
T Consensus 206 ~~~~~-~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 206 QAIEL-EDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCCCT-TSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CccCH-HHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhH
Confidence 54321 235567888888888863 22222 25678888888887653 12245677888888887766 11
Q ss_pred ccc------cccccceeeeecc
Q 015886 334 SSN------ALSLSETSLCFSS 349 (398)
Q Consensus 334 ~~~------~~~L~~l~i~~~~ 349 (398)
+.. ...|+++.+..+.
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSS
T ss_pred ccccccccccccccceEeecCc
Confidence 111 3567777775554
No 88
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.14 E-value=2.8e-10 Score=96.20 Aligned_cols=146 Identities=19% Similarity=0.196 Sum_probs=83.8
Q ss_pred ccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecCCCcceeeecccCceEEEEe
Q 015886 158 VKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIH 237 (398)
Q Consensus 158 ~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~ 237 (398)
..+++|+.|+++++.+.+ +. -+..+++|+.|++.+|.....-.+..+++|+.|++.+|
T Consensus 41 ~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n------------------- 98 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK------------------- 98 (197)
T ss_dssp HHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECT-------------------
T ss_pred hhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECC-------------------
Confidence 556777777777776632 11 14566777777777662211112333455555555444
Q ss_pred eeecc-ceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc--cccccceEeccccccce-e
Q 015886 238 QTYLF-PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLI-Q 313 (398)
Q Consensus 238 ~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~--~~~~L~~L~l~~c~~~~-~ 313 (398)
... .....++.+++|+.|+++++.+.+..... +..+++|+.|++++|..++.++. .+++|++|++++|..-. .
T Consensus 99 --~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 99 --DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp --TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT
T ss_pred --ccCcccChhhcCCCCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH
Confidence 311 11224567788888888877777644433 45678888888888754544432 45677788777776431 1
Q ss_pred ccccCCCcceEEEec
Q 015886 314 VEIETPNLSIFKYHG 328 (398)
Q Consensus 314 ~~~~~p~L~~l~~~~ 328 (398)
....+|+|+.|.+.+
T Consensus 176 ~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFS 190 (197)
T ss_dssp TGGGCSSCCEEEECB
T ss_pred HhccCCCCCEEEeeC
Confidence 223445555555555
No 89
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.13 E-value=3.2e-10 Score=108.55 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=44.9
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
+++++|+++.+... .+| .+..+++|++|+++++.+...+ ...++|++|+++++.+.. +.. +..+++|+.|++
T Consensus 131 ~~L~~L~L~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE--KLP-ELQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCC--CCc-ccCCCCCCCEEECCCCcCcccC--CCcccccEEECcCCcCCc--Ccc-ccCCCCCCEEEC
Confidence 47888887764332 355 4666777888888777665321 223467777776666532 111 455666666666
Q ss_pred eecC
Q 015886 194 RSCE 197 (398)
Q Consensus 194 ~~~~ 197 (398)
++|.
T Consensus 203 ~~N~ 206 (454)
T 1jl5_A 203 DNNS 206 (454)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 6553
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.13 E-value=8.2e-11 Score=105.83 Aligned_cols=168 Identities=16% Similarity=0.084 Sum_probs=86.2
Q ss_pred CCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEe
Q 015886 137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV 216 (398)
Q Consensus 137 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~ 216 (398)
.+++|+++++.++.+...+.. -.++++.|+|+++.++.-.. ..+..++.|+.|+++++.....-....+++|+.|+++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS 85 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECC
T ss_pred ccCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECC
Confidence 445666676666655432211 12566777776666532111 1245567777777766543221122345667777776
Q ss_pred cCCCcceee---ecccCceEEEEeeeecccee-EeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccc
Q 015886 217 NTSDIKRVE---IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS 292 (398)
Q Consensus 217 ~~~~l~~~~---~~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~ 292 (398)
++ .+..++ ...++|++|+++++...... ..+..+++|+.|+++++.+... ....+..+++|+.|+++++ .++.
T Consensus 86 ~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~ 162 (290)
T 1p9a_G 86 HN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANN-NLTE 162 (290)
T ss_dssp SS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTS-CCSC
T ss_pred CC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCC-cCCc
Confidence 65 222222 24556666666665522211 2345566666666666655431 1222345666666666664 2333
Q ss_pred ccc----cccccceEeccccc
Q 015886 293 VRI----SSPCLKTLILECCD 309 (398)
Q Consensus 293 ~~~----~~~~L~~L~l~~c~ 309 (398)
++. .+++|++|+++++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred cCHHHhcCcCCCCEEECCCCc
Confidence 332 34566666665554
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.08 E-value=1.5e-10 Score=103.38 Aligned_cols=187 Identities=19% Similarity=0.148 Sum_probs=132.4
Q ss_pred cccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEEEecCCCcceee----ecccCceEE
Q 015886 161 FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNAL 234 (398)
Q Consensus 161 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l 234 (398)
++|++|+++++.++.-.. ..+..+++|+.|++++|...... .+..+++|+.|+++++ .+..+. ..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCH-hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEE
Confidence 579999999988743221 13567899999999998443211 2455799999999988 333333 257899999
Q ss_pred EEeeeeccce-eEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccc----eEec
Q 015886 235 AIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLK----TLIL 305 (398)
Q Consensus 235 ~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~----~L~l 305 (398)
+++++..... ...++.+++|++|+++++.+....+...+..+++|+.|+++++. ++.+.. ..++|+ +|++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEEC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeec
Confidence 9988772221 22478899999999999988664444557789999999999973 333322 334555 7888
Q ss_pred cccccce--eccccCCCcceEEEeccce-----eeccccccccceeeeeccc
Q 015886 306 ECCDKLI--QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSH 350 (398)
Q Consensus 306 ~~c~~~~--~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~~ 350 (398)
+++.... ......++|+.|.+.++.. .++.+.++|++++++.+..
T Consensus 185 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 8876542 1223344899999998877 4567889999999976643
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.06 E-value=2.4e-10 Score=102.86 Aligned_cols=166 Identities=17% Similarity=0.179 Sum_probs=127.0
Q ss_pred CCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEe
Q 015886 137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV 216 (398)
Q Consensus 137 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~ 216 (398)
.+++|+.|+++++.+...+....+++|+.|+++++.+++-. . +..+++|+.|++++|....--.+..+++|+.|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence 45789999999998876666788999999999999884322 1 78899999999998864432235667999999999
Q ss_pred cCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc
Q 015886 217 NTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR 294 (398)
Q Consensus 217 ~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~ 294 (398)
+| .+..+. ..+++|+.|+++++..... ..+..+++|+.|+++++.+.+... +..+++|+.|+++++ .++.+.
T Consensus 121 ~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N-~i~~l~ 194 (291)
T 1h6t_A 121 HN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN-HISDLR 194 (291)
T ss_dssp TS-CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCBCG
T ss_pred CC-cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCC-cCCCCh
Confidence 98 233332 2678999999998873332 356889999999999998876322 678999999999997 333333
Q ss_pred --ccccccceEeccccccc
Q 015886 295 --ISSPCLKTLILECCDKL 311 (398)
Q Consensus 295 --~~~~~L~~L~l~~c~~~ 311 (398)
..+++|+.|+++++...
T Consensus 195 ~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 195 ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GGTTCTTCSEEEEEEEEEE
T ss_pred hhccCCCCCEEECcCCccc
Confidence 26789999999988653
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.04 E-value=1.4e-10 Score=114.76 Aligned_cols=164 Identities=17% Similarity=0.170 Sum_probs=85.4
Q ss_pred CCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEec
Q 015886 138 VESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVN 217 (398)
Q Consensus 138 ~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~ 217 (398)
+++|+.|+++++.+...+....+++|+.|+|+++.+.+-.- +..+++|+.|+|++|.....-.+..+++|+.|++.+
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence 35566666666655544445556666666666665522111 455666666666665332211334456666666666
Q ss_pred CCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc
Q 015886 218 TSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI 295 (398)
Q Consensus 218 ~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~ 295 (398)
| .+..+. ..+++|+.|+++++..... ..+..+++|+.|+|+++.+..... +..+++|+.|+|++| .+..++.
T Consensus 119 N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l~~ 192 (605)
T 1m9s_A 119 N-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN-HISDLRA 192 (605)
T ss_dssp S-CCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCBCGG
T ss_pred C-CCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCC-CCCCChH
Confidence 5 111121 2456666666666552221 234556666666666665544211 455666666666665 2222221
Q ss_pred --cccccceEecccccc
Q 015886 296 --SSPCLKTLILECCDK 310 (398)
Q Consensus 296 --~~~~L~~L~l~~c~~ 310 (398)
.+++|+.|++++|..
T Consensus 193 l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQEC 209 (605)
T ss_dssp GTTCTTCSEEECCSEEE
T ss_pred HccCCCCCEEEccCCcC
Confidence 445666666666544
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.01 E-value=3.5e-10 Score=100.60 Aligned_cols=168 Identities=17% Similarity=0.145 Sum_probs=96.7
Q ss_pred CCCeEEEEEecCCccccCCc-cccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccE
Q 015886 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 190 (398)
+++++|+++.+. ...++. .+..+++|++|+++++.+... ..+..+++|++|+|+++.+..-. ...+..+++|+.
T Consensus 37 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCE
T ss_pred CCCCEEECcCCC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCE
Confidence 478888887643 234544 566789999999999987644 33467999999999998873211 123567899999
Q ss_pred EEeeecCCccee--ecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeecccee-EeecCCCCCceEEeeccC
Q 015886 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLP 263 (398)
Q Consensus 191 L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 263 (398)
|++.++...... .+..+++|+.|+++++ .+..+. ..+++|++|+++++...... ..+..+++|+.|+++++.
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 999987543211 2345678888888776 222222 13345555555544311111 113344455555554444
Q ss_pred CchHHHhhhhcCCCCCcEEeccC
Q 015886 264 IEDEWLCNGISKLPLLEYLSMTK 286 (398)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~ 286 (398)
+... ....+..+++|+.|++++
T Consensus 193 l~~~-~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 193 LKRV-PEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CSCC-CTTTTTTCTTCCEEECCS
T ss_pred CCcC-CHHHhccccCCCEEEecC
Confidence 3321 111223344444444444
No 95
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.97 E-value=5e-10 Score=100.66 Aligned_cols=186 Identities=14% Similarity=0.057 Sum_probs=121.2
Q ss_pred CCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (398)
Q Consensus 115 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 192 (398)
+++++++.. .....+|..+. ++++.|+++++.+... ..+..+++|+.|+|+++.++.-.. ...+++|+.|+
T Consensus 11 ~l~~l~~~~--~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~ 83 (290)
T 1p9a_G 11 SHLEVNCDK--RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLD 83 (290)
T ss_dssp TCCEEECTT--SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEE
T ss_pred CccEEECCC--CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEE
Confidence 455554443 23345565443 6788888888877543 456678888888888877632111 15778899999
Q ss_pred eeecCCcce-eecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeecccee-EeecCCCCCceEEeeccCCch
Q 015886 193 IRSCEGLES-LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIED 266 (398)
Q Consensus 193 l~~~~~~~~-~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 266 (398)
++++....- ..+..+++|+.|.++++ .+..+. ...++|++|+++++...... ..+..+++|+.|+++++.+..
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 888744321 12345688999999887 333332 25678999999887632221 124678899999999888764
Q ss_pred HHHhhhhcCCCCCcEEeccCccccccccc---cccccceEecccccc
Q 015886 267 EWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDK 310 (398)
Q Consensus 267 ~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~ 310 (398)
. ....+..+++|+.|+++++ .++.++. ..+.|+++++.+.+.
T Consensus 163 l-~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 163 L-PAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp C-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred c-CHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 2 2344567899999999986 3444443 345788888876654
No 96
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.95 E-value=4.1e-10 Score=72.94 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=33.8
Q ss_pred CCccCCCCCHHHHHHHhccCChhHHHHHhhcccchhhhhc
Q 015886 8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQ 47 (398)
Q Consensus 8 ~~D~i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw~ 47 (398)
..+.++.||+|++.+||+||+.+|+++++.|||+|+++..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 4567999999999999999999999999999999997543
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.93 E-value=2.9e-10 Score=105.62 Aligned_cols=204 Identities=12% Similarity=0.071 Sum_probs=135.8
Q ss_pred EEEeccccCCC-CccccC-cccceEEEEEEEeCHH---HHHHHHhcCc-cccEEEeeecCCcce--eecCC-----CCCC
Q 015886 144 LELSYCKLQQP-SENVKL-FSLRKLALREVCADDQ---AIASLISGCP-LIEYLEIRSCEGLES--LDLVN-----LSNL 210 (398)
Q Consensus 144 L~L~~~~l~~~-~~~~~~-~~L~~L~L~~~~~~~~---~l~~l~~~cp-~Le~L~l~~~~~~~~--~~i~~-----~~~L 210 (398)
++++.+.+... +..... ++|++|+|+++.+++. .+...+..+| .|++|++++|..... -.+.. +++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45555555433 333344 4599999999998443 3445567888 999999999854321 11211 2899
Q ss_pred ceEEEecCCCcceeee--------cc-cCceEEEEeeeeccceeE-e----ecC-CCCCceEEeeccCCchH---HHhhh
Q 015886 211 KEIILVNTSDIKRVEI--------KT-SNVNALAIHQTYLFPIEV-N----VSS-CGNLKCLKFDFLPIEDE---WLCNG 272 (398)
Q Consensus 211 ~~L~l~~~~~l~~~~~--------~~-p~L~~l~l~~~~~~~~~~-~----~~~-~~~L~~L~l~~~~~~~~---~~~~~ 272 (398)
++|++++|. +..... .. ++|++|+++++....... . +.. .++|++|+++++.+.+. .+...
T Consensus 83 ~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 83 TSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred cEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999993 222211 22 799999999987322111 1 233 36999999999988763 34444
Q ss_pred hcCCC-CCcEEeccCccccccccc--------cc-cccceEeccccccce----ec---ccc-CCCcceEEEeccce---
Q 015886 273 ISKLP-LLEYLSMTKCHKLTSVRI--------SS-PCLKTLILECCDKLI----QV---EIE-TPNLSIFKYHGDLI--- 331 (398)
Q Consensus 273 ~~~~~-~L~~L~l~~c~~~~~~~~--------~~-~~L~~L~l~~c~~~~----~~---~~~-~p~L~~l~~~~~~~--- 331 (398)
+..++ +|+.|++++|. ++.... .. ++|++|++++|..-. .+ ... .++|+.|.++++..
T Consensus 162 l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 55566 99999999983 332221 33 599999999998642 11 122 46999999999876
Q ss_pred ------eeccccccccceeeeecc
Q 015886 332 ------SFSSNALSLSETSLCFSS 349 (398)
Q Consensus 332 ------~~~~~~~~L~~l~i~~~~ 349 (398)
..+...++|+++.++.+.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHhcCCCccEEEeccCC
Confidence 334667899999997665
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.91 E-value=2.5e-09 Score=98.82 Aligned_cols=211 Identities=13% Similarity=0.030 Sum_probs=127.4
Q ss_pred CCCeEEEEEecCCccccCCcc-ccCCCCeeEEEEeccccCCC---CccccCcccceEEE-EEEEeCHHHHHHHHhcCccc
Q 015886 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP---SENVKLFSLRKLAL-REVCADDQAIASLISGCPLI 188 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L-~~~~~~~~~l~~l~~~cp~L 188 (398)
+++++|+++... -..+|.. +..+++|++|+|+++.+... ..+..+++|+.+.. .++.+..- ....+..+++|
T Consensus 30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence 478888888643 3456664 45678888888888875322 34456777665443 33333110 01224667888
Q ss_pred cEEEeeecCCcce--eecCCCCCCceEEEecCCCcceeeec-----ccCceEEEEeeeeccceeEeecCCCCCceEEeec
Q 015886 189 EYLEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEIK-----TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDF 261 (398)
Q Consensus 189 e~L~l~~~~~~~~--~~i~~~~~L~~L~l~~~~~l~~~~~~-----~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 261 (398)
+.|++.++..... .......++..|.+.++..+..+... ...++.|+++++............++|+.|.+..
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence 8888888754321 11222356777777776555555431 2457788887776322222223446788888864
Q ss_pred cCCchHHHhhhhcCCCCCcEEeccCccccccccc-cccccceEeccccccceecc--ccCCCcceEEEec
Q 015886 262 LPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVE--IETPNLSIFKYHG 328 (398)
Q Consensus 262 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-~~~~L~~L~l~~c~~~~~~~--~~~p~L~~l~~~~ 328 (398)
+..........+..+++|+.|+++++ .++.++. .+.+|++|.+.++..++.+. ...++|+.+.+..
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred CCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 33222222334567889999999986 5666655 46788888888887775543 4556777766643
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.91 E-value=1.2e-09 Score=96.69 Aligned_cols=142 Identities=16% Similarity=0.219 Sum_probs=80.6
Q ss_pred CCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEe
Q 015886 137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV 216 (398)
Q Consensus 137 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~ 216 (398)
.+++|++|+++++.+...+....+++|+.|+|+++.+++-.- +..+++|+.|++++|....--.+.. ++|+.|+++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLD 114 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECC
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc-CcccEEEcc
Confidence 346667777776666544455566777777777666632111 5566777777777664322111222 566666666
Q ss_pred cCCCcceee--ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886 217 NTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 217 ~~~~l~~~~--~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (398)
+| .+..+. ..+++|+.|+++++..... ..+..+++|+.|+++++.+.+. ..+..+++|+.|+++++
T Consensus 115 ~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 115 NN-ELRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp SS-CCSBSGGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred CC-ccCCChhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence 66 222221 1455666666666552221 1356667777777777666553 33556677777777764
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.89 E-value=1.4e-09 Score=95.51 Aligned_cols=88 Identities=16% Similarity=0.072 Sum_probs=48.6
Q ss_pred cccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--e
Q 015886 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (398)
Q Consensus 128 ~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~ 203 (398)
...+|..+. ++|+.|+++++.+... .....+++|++|+|+++.+.... ...+..+++|+.|+++++...... .
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 102 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPLGV 102 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccChhH
Confidence 334554443 5677888887766544 34556777777777777663211 112345667777777665432111 1
Q ss_pred cCCCCCCceEEEecC
Q 015886 204 LVNLSNLKEIILVNT 218 (398)
Q Consensus 204 i~~~~~L~~L~l~~~ 218 (398)
+..+++|+.|++.++
T Consensus 103 ~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 103 FDHLTQLDKLYLGGN 117 (251)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hcccCCCCEEEcCCC
Confidence 233455666666555
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.88 E-value=3.7e-10 Score=99.98 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=114.8
Q ss_pred CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecC
Q 015886 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~ 218 (398)
.+++.+++.++.+........+++|+.|+++++.+++-. -+..+++|+.|++++|.......+..+++|+.|+++++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence 334555556655544345667899999999998874321 26788999999999885443223667899999999998
Q ss_pred CCcceee-ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc--c
Q 015886 219 SDIKRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--I 295 (398)
Q Consensus 219 ~~l~~~~-~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~--~ 295 (398)
.+..+. ...++|+.|+++++..... ..+..+++|+.|+++++.+.+. . .+..+++|+.|+++++. ++.+. .
T Consensus 96 -~l~~l~~~~~~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~-i~~~~~l~ 169 (263)
T 1xeu_A 96 -RLKNLNGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNE-ITNTGGLT 169 (263)
T ss_dssp -CCSCCTTCCCSSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSC-CCBCTTST
T ss_pred -ccCCcCccccCcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCc-CcchHHhc
Confidence 222221 1228999999998873222 2478889999999999888763 2 36678999999999963 33322 2
Q ss_pred cccccceEeccccccc
Q 015886 296 SSPCLKTLILECCDKL 311 (398)
Q Consensus 296 ~~~~L~~L~l~~c~~~ 311 (398)
.+++|+.|+++++...
T Consensus 170 ~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TCCCCCEEEEEEEEEE
T ss_pred cCCCCCEEeCCCCccc
Confidence 5678888888887653
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.86 E-value=3.8e-09 Score=103.41 Aligned_cols=176 Identities=16% Similarity=0.117 Sum_probs=116.2
Q ss_pred hCCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEE
Q 015886 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (398)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~ 192 (398)
..+++.|+++.+.. ..+|..++ ++|++|++++|.+...+ ..+++|+.|+|++|.++. +.. +. .+|+.|+
T Consensus 58 ~~~L~~L~Ls~n~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~ 126 (571)
T 3cvr_A 58 INQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHLD 126 (571)
T ss_dssp HTTCSEEECCSSCC--SCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEE
T ss_pred cCCccEEEeCCCCC--CccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEEE
Confidence 45888888876432 34676553 78999999998887434 567899999999887743 222 22 2899999
Q ss_pred eeecCCcceeecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhh
Q 015886 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG 272 (398)
Q Consensus 193 l~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 272 (398)
+++|.... +.- .+++|+.|+++++ .+..++...++|+.|+++++....... +. ++|+.|+++++.+.. +..
T Consensus 127 Ls~N~l~~-lp~-~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~--lp~- 197 (571)
T 3cvr_A 127 VDNNQLTM-LPE-LPALLEYINADNN-QLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES--LPA- 197 (571)
T ss_dssp CCSSCCSC-CCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS--CCC-
T ss_pred CCCCcCCC-CCC-cCccccEEeCCCC-ccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc--hhh-
Confidence 98875432 322 4688999998887 333344466788888888887322222 33 788889988887763 111
Q ss_pred hcCCCCC-------cEEeccCccccccccc---cccccceEeccccccc
Q 015886 273 ISKLPLL-------EYLSMTKCHKLTSVRI---SSPCLKTLILECCDKL 311 (398)
Q Consensus 273 ~~~~~~L-------~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~~ 311 (398)
+. ++| +.|+++++ .++.++. .+++|+.|+++++...
T Consensus 198 ~~--~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 198 VP--VRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred HH--HhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCC
Confidence 11 155 88888886 3344443 4678888888887764
No 103
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.84 E-value=7.6e-09 Score=103.16 Aligned_cols=203 Identities=17% Similarity=0.154 Sum_probs=115.2
Q ss_pred ccCcccceEEEEEEEeCH-HHHHHHHhcCccccEEEeeecCCcce-eecCCCCCCceEEEecCCCcc----eeeecccCc
Q 015886 158 VKLFSLRKLALREVCADD-QAIASLISGCPLIEYLEIRSCEGLES-LDLVNLSNLKEIILVNTSDIK----RVEIKTSNV 231 (398)
Q Consensus 158 ~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~~~~~~~-~~i~~~~~L~~L~l~~~~~l~----~~~~~~p~L 231 (398)
..+++|+.|+++++.+.. .........++.|+.|++..+..... .....+++|+.+.+..+.... ......+++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 345566666655544311 11111123455566665554432211 112234666666666551111 111245566
Q ss_pred eEEEEeeeecc-ceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc----ccccccceEecc
Q 015886 232 NALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILE 306 (398)
Q Consensus 232 ~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~ 306 (398)
+.++++.+... .....+..++.|+.|+++++..........+..+++|+.|++++| .++.+. ..+++|+.|+|+
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECC
Confidence 67766655411 111234567888888888776544434455677889999999987 344432 256789999999
Q ss_pred ccccc---eeccccCCCcceEEEeccce-----eecccc-ccccceeeeecccc-hhhHHHHHHH
Q 015886 307 CCDKL---IQVEIETPNLSIFKYHGDLI-----SFSSNA-LSLSETSLCFSSHL-MVNIEWVVEY 361 (398)
Q Consensus 307 ~c~~~---~~~~~~~p~L~~l~~~~~~~-----~~~~~~-~~L~~l~i~~~~~~-~~~~~~~~~~ 361 (398)
++... ......+++|+.|+++++.. ..+.+. ++|+.++++.+.-. .+...|+...
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~w 591 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 591 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHH
Confidence 88643 12345678899999988876 344444 68999999666422 2455666554
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.84 E-value=8.7e-10 Score=90.51 Aligned_cols=127 Identities=20% Similarity=0.156 Sum_probs=58.6
Q ss_pred CCeeEEEEeccccC--CC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEE
Q 015886 139 ESLHVLELSYCKLQ--QP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (398)
Q Consensus 139 ~~L~~L~L~~~~l~--~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l 215 (398)
++|++|++++|.+. .. .....+++|+.|+++++.+... ..+..+++|+.|++++|.....
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-------------- 86 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-------------- 86 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC--------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH--------------
Confidence 55666666666654 11 2234555566665555544221 1223334444444443322110
Q ss_pred ecCCCcceeeecccCceEEEEeeeeccce--eEeecCCCCCceEEeeccCCchHHH--hhhhcCCCCCcEEeccCc
Q 015886 216 VNTSDIKRVEIKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDEWL--CNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 216 ~~~~~l~~~~~~~p~L~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~c 287 (398)
+......+++|++|+++++..... ...+..+++|+.|+++++.+..... ...+..+++|+.|++++|
T Consensus 87 -----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 87 -----LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp -----CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred -----HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 111111244445554444431111 1234566667777776665544211 234556666777766665
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.83 E-value=2.1e-09 Score=94.42 Aligned_cols=145 Identities=14% Similarity=0.120 Sum_probs=79.5
Q ss_pred CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEEEe
Q 015886 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILV 216 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l~ 216 (398)
.+.+++++.++.+...+.. -.++|+.|+|+++.+....- ..+..+++|+.|+++++...... .+..+++|+.|++.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4567788888776543222 22689999998887732211 12567888999998887443211 13446788888887
Q ss_pred cCCCcceee----ecccCceEEEEeeeeccceeE-eecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886 217 NTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 217 ~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (398)
++ .+..+. ...++|++|+++++....... .+..+++|+.|+++++.+.... ...+..+++|+.|+++++
T Consensus 92 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 92 NN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp TS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCC
Confidence 76 222222 134556666665554221111 1344555666666555544211 112344555555555554
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.82 E-value=1.3e-08 Score=93.91 Aligned_cols=213 Identities=17% Similarity=0.146 Sum_probs=112.2
Q ss_pred ccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee-
Q 015886 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD- 203 (398)
Q Consensus 127 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~- 203 (398)
....+|..+ .+++++|+|+++.+... ..+..+++|++|+|+++.+....-...+.+++.|+++.+.++..+..+.
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 334555544 25677777777766433 2356677777777777754111001123456666666555555554442
Q ss_pred --cCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccc-e-eEeecCC-CCCceEEeeccCCchHHHhhhhc
Q 015886 204 --LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFP-I-EVNVSSC-GNLKCLKFDFLPIEDEWLCNGIS 274 (398)
Q Consensus 204 --i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~-~-~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~ 274 (398)
+..+++|+.|.+.++ .+..+. ....++..+++.+..... . ...+..+ ..++.|+++++.+..- .....
T Consensus 98 ~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i--~~~~f 174 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI--HNSAF 174 (350)
T ss_dssp TSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE--CTTSS
T ss_pred hhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC--Chhhc
Confidence 344577777777776 122111 234456666665543111 0 0112233 3567777777766431 11112
Q ss_pred CCCCCcEEeccCccccccccc----cccccceEeccccccceecc-ccCCCcceEEEeccce----eeccccccccceee
Q 015886 275 KLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVE-IETPNLSIFKYHGDLI----SFSSNALSLSETSL 345 (398)
Q Consensus 275 ~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~~~~~~~-~~~p~L~~l~~~~~~~----~~~~~~~~L~~l~i 345 (398)
..++|+.|.+.++..++.++. .+++|+.|+++++.. ..+. ....+|+.|...+... ..+.+.++|+.+.+
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l-~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC-CCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc-CccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence 345677777776656665553 456777777777643 2222 2234566655554433 33445556666665
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.76 E-value=5.9e-10 Score=89.59 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=16.9
Q ss_pred CCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886 251 CGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (398)
+++|++|+++++.+.+......+..+++|+.|+++++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 4445555555444443222233444555555555554
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.75 E-value=4.5e-09 Score=89.47 Aligned_cols=87 Identities=20% Similarity=0.159 Sum_probs=47.6
Q ss_pred ccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ec
Q 015886 129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DL 204 (398)
Q Consensus 129 ~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i 204 (398)
..+|..+ .++|++|+++++.+... ..+..+++|++|+++++.+..- ....+..+++|+.|++.++...... .+
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence 3444433 35778888888776543 2345677777777777765311 1122355677777777665322111 12
Q ss_pred CCCCCCceEEEecC
Q 015886 205 VNLSNLKEIILVNT 218 (398)
Q Consensus 205 ~~~~~L~~L~l~~~ 218 (398)
..+++|+.|++.++
T Consensus 97 ~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 97 DKLTQLKELALNTN 110 (208)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cCccCCCEEEcCCC
Confidence 33455666666554
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.73 E-value=7.6e-09 Score=84.82 Aligned_cols=104 Identities=26% Similarity=0.221 Sum_probs=78.4
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
+++++|+++.+......+|..+..+++|++|++++|.+........+++|+.|++++|.+... +...+..+|+|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence 479999998865443477877788899999999999887656677899999999999998442 4455667999999999
Q ss_pred eecCCcce---eecCCCCCCceEEEecC
Q 015886 194 RSCEGLES---LDLVNLSNLKEIILVNT 218 (398)
Q Consensus 194 ~~~~~~~~---~~i~~~~~L~~L~l~~~ 218 (398)
++|..... -.+..+++|+.|++.+|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 98854321 13344567777777666
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.71 E-value=3e-08 Score=97.08 Aligned_cols=175 Identities=12% Similarity=0.033 Sum_probs=120.2
Q ss_pred CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecC
Q 015886 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~ 218 (398)
.+|+.|+++++.+...+.. -+++|+.|+|++|.++. +. ..+++|+.|++++|.... +..- ..+|+.|+++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~-l~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~l-~~~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDN-LPPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-LPEL-PASLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSC-CCTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCCC-CTTCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHh-HcCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-cchh-hcCCCEEECCCC
Confidence 4899999999987653322 25899999999998852 22 457999999999884432 3221 148999999988
Q ss_pred CCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccccccc
Q 015886 219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSP 298 (398)
Q Consensus 219 ~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~ 298 (398)
.+..++...++|+.|+++++...... ..+++|+.|++++|.+.. +.. +. ++|+.|+++++ .++.++.-.+
T Consensus 131 -~l~~lp~~l~~L~~L~Ls~N~l~~lp---~~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N-~L~~lp~~~~ 200 (571)
T 3cvr_A 131 -QLTMLPELPALLEYINADNNQLTMLP---ELPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTN-LLESLPAVPV 200 (571)
T ss_dssp -CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSS-CCSSCCCCC-
T ss_pred -cCCCCCCcCccccEEeCCCCccCcCC---CcCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCC-CCCchhhHHH
Confidence 33333336789999999988732211 156899999999988765 222 22 89999999996 4445544223
Q ss_pred cc-------ceEeccccccc--eeccccCCCcceEEEeccce
Q 015886 299 CL-------KTLILECCDKL--IQVEIETPNLSIFKYHGDLI 331 (398)
Q Consensus 299 ~L-------~~L~l~~c~~~--~~~~~~~p~L~~l~~~~~~~ 331 (398)
+| +.|+++++..- ..-...+++|+.|.+.++..
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 66 88999887653 22234477888888888766
No 111
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.67 E-value=2.6e-08 Score=81.23 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=75.5
Q ss_pred cccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEE-eCHHHHHHHHhc---CccccEEEeeecCCcce
Q 015886 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISG---CPLIEYLEIRSCEGLES 201 (398)
Q Consensus 128 ~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~---cp~Le~L~l~~~~~~~~ 201 (398)
...+|......-.|++|++++|.+... .....|++|+.|+|++|. ++|.++..+... |+.|++|+|++|..++.
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 345666444556799999999987654 445689999999999997 599999987763 78999999999987753
Q ss_pred e---ecCCCCCCceEEEecCCCccee
Q 015886 202 L---DLVNLSNLKEIILVNTSDIKRV 224 (398)
Q Consensus 202 ~---~i~~~~~L~~L~l~~~~~l~~~ 224 (398)
- .+..+++|++|++++|+.+...
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCch
Confidence 2 2445799999999999766553
No 112
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=2.2e-08 Score=92.41 Aligned_cols=132 Identities=17% Similarity=0.127 Sum_probs=85.6
Q ss_pred HHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecCCC----cceeee-cccCceEEEEeeee--c--cc-e--
Q 015886 177 AIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSD----IKRVEI-KTSNVNALAIHQTY--L--FP-I-- 244 (398)
Q Consensus 177 ~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~~~----l~~~~~-~~p~L~~l~l~~~~--~--~~-~-- 244 (398)
.+..++..+|+|++|.|.++.+..-..+. .++|++|.+..|.. +..+.. .+|+|++|+++... . .. .
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 45677889999999999987443322233 58999999987721 111221 57999999986321 0 10 0
Q ss_pred ---eEeecCCCCCceEEeeccCCchHHHhhhh--cCCCCCcEEeccCccccccc-----c---ccccccceEecccccc
Q 015886 245 ---EVNVSSCGNLKCLKFDFLPIEDEWLCNGI--SKLPLLEYLSMTKCHKLTSV-----R---ISSPCLKTLILECCDK 310 (398)
Q Consensus 245 ---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~~~-----~---~~~~~L~~L~l~~c~~ 310 (398)
......+|+|+.|++.++.+.+.....+. ..+|+|++|+|+.+ .+++. . ..+++|+.|++++|..
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 11124589999999998888765444433 35789999999775 34332 2 1357788888877753
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.65 E-value=7.9e-09 Score=82.90 Aligned_cols=104 Identities=30% Similarity=0.310 Sum_probs=75.1
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEe
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l 193 (398)
+++++|+++.+......+|..+..+++|++|++++|.+........+++|+.|+++++.++.. +...+..+++|+.|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence 478888887754433467777778899999999998876656677788999999999888432 4455667889999999
Q ss_pred eecCCcce---eecCCCCCCceEEEecC
Q 015886 194 RSCEGLES---LDLVNLSNLKEIILVNT 218 (398)
Q Consensus 194 ~~~~~~~~---~~i~~~~~L~~L~l~~~ 218 (398)
++|..... -.+..+++|+.|++++|
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 88754321 22444577777777766
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.61 E-value=1.3e-08 Score=86.49 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=89.3
Q ss_pred EEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee---cCCCCCCceEEEecCC
Q 015886 143 VLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD---LVNLSNLKEIILVNTS 219 (398)
Q Consensus 143 ~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~---i~~~~~L~~L~l~~~~ 219 (398)
.++..+..+...+ ....++|++|+++++.++.-. ...+..+++|++|++.++... .+. +..+++|++|+++++
T Consensus 11 ~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n- 86 (208)
T 2o6s_A 11 TVECYSQGRTSVP-TGIPAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN- 86 (208)
T ss_dssp EEECCSSCCSSCC-SCCCTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS-
T ss_pred EEEecCCCccCCC-CCCCCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCC-
Confidence 4455554443222 223568999999998774211 123567899999999887433 222 344678888888877
Q ss_pred Ccceee----ecccCceEEEEeeeeccceeE-eecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc
Q 015886 220 DIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR 294 (398)
Q Consensus 220 ~l~~~~----~~~p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~ 294 (398)
.+..+. ...++|++|+++++....... .+..+++|+.|+++++.+... ....+..+++|+.|++++++- .
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~----~ 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPW----D 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCB----C
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCe----e
Confidence 222222 245677777777665222111 245567777777776665431 122345567777777766421 1
Q ss_pred ccccccceEeccccc
Q 015886 295 ISSPCLKTLILECCD 309 (398)
Q Consensus 295 ~~~~~L~~L~l~~c~ 309 (398)
-.++.|+.|+++.+.
T Consensus 162 ~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 162 CTCPGIRYLSEWINK 176 (208)
T ss_dssp CCTTTTHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHh
Confidence 234455555555443
No 115
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=2.7e-07 Score=85.19 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=96.3
Q ss_pred hCCCeEEEEEecCCc--------cccCCccccCCCCeeEEEEeccc-cCCCCccccCcccceEEEEEEEeCHHHHHHHHh
Q 015886 113 ESEVKELVLVHWRSE--------RRNLPEIIFYVESLHVLELSYCK-LQQPSENVKLFSLRKLALREVCADDQAIASLIS 183 (398)
Q Consensus 113 ~~~l~~L~l~~~~~~--------~~~l~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~ 183 (398)
.++|++|.+...... ...+...+..+++|++|.+.++. +..++ ...++|+.|.|..+.++++.+..+..
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHH
Confidence 469999988542111 11244455678999999998873 32222 34899999999988888888877653
Q ss_pred -cCccccEEEeeecCC-------cce----eecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCC
Q 015886 184 -GCPLIEYLEIRSCEG-------LES----LDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSC 251 (398)
Q Consensus 184 -~cp~Le~L~l~~~~~-------~~~----~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~ 251 (398)
.+|+|+.|+|..+.. +.. +....+|+|+.|.+.+|...... .......+.+
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~-----------------~~~la~a~~~ 278 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV-----------------VEMFLESDIL 278 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH-----------------HHHHHHCSSG
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH-----------------HHHHHhCccC
Confidence 799999999864211 100 11112455555555544211000 0001112457
Q ss_pred CCCceEEeeccCCchHHHhhhh---cCCCCCcEEeccCc
Q 015886 252 GNLKCLKFDFLPIEDEWLCNGI---SKLPLLEYLSMTKC 287 (398)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~c 287 (398)
|+|++|+|+++.+.+.....+. ..+++|+.|+++.|
T Consensus 279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 8888888888888776544443 45788888888876
No 116
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.52 E-value=5.5e-08 Score=79.33 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=57.8
Q ss_pred CceEEEEeeeecc-ceeEeecCCCCCceEEeeccC-CchHHHhhhhcC---CCCCcEEeccCccccccccc----ccccc
Q 015886 230 NVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISK---LPLLEYLSMTKCHKLTSVRI----SSPCL 300 (398)
Q Consensus 230 ~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~l~~c~~~~~~~~----~~~~L 300 (398)
+|++++++++... .....+..+++|++|+|++|. +++..+..+... +++|++|+|++|..+++-+. .+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 4666666666511 111234678888888888774 777777776542 56888888888887776554 57888
Q ss_pred ceEeccccccce
Q 015886 301 KTLILECCDKLI 312 (398)
Q Consensus 301 ~~L~l~~c~~~~ 312 (398)
++|+|++|+.++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 888888888763
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.52 E-value=3.7e-08 Score=81.40 Aligned_cols=38 Identities=8% Similarity=-0.103 Sum_probs=19.5
Q ss_pred cCCCCeeEEEEeccccCCCCccccC-cccceEEEEEEEe
Q 015886 136 FYVESLHVLELSYCKLQQPSENVKL-FSLRKLALREVCA 173 (398)
Q Consensus 136 ~~~~~L~~L~L~~~~l~~~~~~~~~-~~L~~L~L~~~~~ 173 (398)
..+.+|++|+++++.+...+....+ ++|+.|+++++.+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l 54 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI 54 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC
Confidence 3456677777777665533222222 2555555555443
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.50 E-value=8.8e-08 Score=82.74 Aligned_cols=135 Identities=15% Similarity=0.144 Sum_probs=74.3
Q ss_pred ccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee-
Q 015886 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD- 203 (398)
Q Consensus 127 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~- 203 (398)
....+|..+ .++|++|+++++.+... ..+..+++|+.|+|+++.+..-. ...+..+++|+.|++++|... .+.
T Consensus 30 ~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~-~l~~ 105 (229)
T 3e6j_A 30 RHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLT-VLPS 105 (229)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred CcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCC-ccCh
Confidence 344555543 26788888888776543 34556777777777777662111 112355677777777666322 111
Q ss_pred --cCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcE
Q 015886 204 --LVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY 281 (398)
Q Consensus 204 --i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 281 (398)
+..+++|+.|++.++ ........+..+++|+.|+++++.+.... ...+..+++|+.
T Consensus 106 ~~~~~l~~L~~L~Ls~N---------------------~l~~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~ 163 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCN---------------------KLTELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTH 163 (229)
T ss_dssp TTTTTCTTCCEEECCSS---------------------CCCSCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred hHhCcchhhCeEeccCC---------------------cccccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCE
Confidence 223455555555554 31111223455667777777766654321 133455677777
Q ss_pred EeccCc
Q 015886 282 LSMTKC 287 (398)
Q Consensus 282 L~l~~c 287 (398)
|++.++
T Consensus 164 L~l~~N 169 (229)
T 3e6j_A 164 AYLFGN 169 (229)
T ss_dssp EECTTS
T ss_pred EEeeCC
Confidence 777763
No 119
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.50 E-value=4.5e-07 Score=90.23 Aligned_cols=128 Identities=13% Similarity=0.011 Sum_probs=83.1
Q ss_pred cccCceEEEEeeee--ccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc----cccccc
Q 015886 227 KTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCL 300 (398)
Q Consensus 227 ~~p~L~~l~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L 300 (398)
..++|+.+++.++. .......+..+++++.++++.+.+... ....+..+++|+.|+++++.....+. ..+++|
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred ccccccchhhhhccccccccccccccccccccccccccccccc-cccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence 34455555554433 111112345566777777776655432 12345677899999999875444322 356899
Q ss_pred ceEeccccccce---eccccCCCcceEEEeccce-----eeccccccccceeeeecccchhhH
Q 015886 301 KTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNI 355 (398)
Q Consensus 301 ~~L~l~~c~~~~---~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~l~i~~~~~~~~~~ 355 (398)
+.|++++|.... .....+++|+.|.++++.. ..+.++++|+.++++.+......+
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 999999996542 2346678999999999876 567788999999997775544433
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.48 E-value=1.3e-08 Score=85.81 Aligned_cols=145 Identities=17% Similarity=0.125 Sum_probs=74.6
Q ss_pred CeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeee
Q 015886 116 VKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRS 195 (398)
Q Consensus 116 l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~ 195 (398)
++...+....+....+|..+..+++|++|+++++.+...+....+++|+.|+++++.+.. +...+..+|+|+.|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcC
Confidence 344444332223333444556667777777777766544455566777777777776641 222334456666666666
Q ss_pred cCCcceeecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccce--eEeecCCCCCceEEeeccCCchH------
Q 015886 196 CEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDE------ 267 (398)
Q Consensus 196 ~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~------ 267 (398)
|....--.+. .+++|+.|+++++..... ...+..+++|++|+++++.+...
T Consensus 103 N~l~~l~~~~---------------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 161 (198)
T 1ds9_A 103 NQIASLSGIE---------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161 (198)
T ss_dssp EECCCHHHHH---------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTT
T ss_pred CcCCcCCccc---------------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccc
Confidence 5221100011 234455555554441111 11345667777777776655332
Q ss_pred ---HHhhhhcCCCCCcEEe
Q 015886 268 ---WLCNGISKLPLLEYLS 283 (398)
Q Consensus 268 ---~~~~~~~~~~~L~~L~ 283 (398)
.....+..+++|+.|+
T Consensus 162 ~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 162 TSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHHHCSSCSEEC
T ss_pred hHHHHHHHHHhCCCcEEEC
Confidence 1223355677777776
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.45 E-value=7.6e-08 Score=82.61 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=26.7
Q ss_pred CeeEEEEeccccCCC---CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeec
Q 015886 140 SLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC 196 (398)
Q Consensus 140 ~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~ 196 (398)
.+++|+++++.+... ..+..+++|+.|+|+++.++.-. ...+..+++|+.|+++++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCC
Confidence 456666666655422 12345566666666555442110 011334455555555544
No 122
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.44 E-value=1.2e-08 Score=94.94 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=20.6
Q ss_pred cCCCCCceEEeeccCCchHHHh---hhhcCCCCCcEEeccCc
Q 015886 249 SSCGNLKCLKFDFLPIEDEWLC---NGISKLPLLEYLSMTKC 287 (398)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~c 287 (398)
...++|++|+|++|.+++.... ..+..+++|+.|+|+++
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 3445566666666666553322 22334466666666664
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.43 E-value=1.4e-07 Score=80.97 Aligned_cols=135 Identities=14% Similarity=0.130 Sum_probs=70.1
Q ss_pred ccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee-
Q 015886 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD- 203 (398)
Q Consensus 127 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~- 203 (398)
....+|..+. ++|+.|+++++.+... ..+..+++|+.|+|+++.++.-. ...+..+++|+.|+++++... .+.
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~-~l~~ 97 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKIT-ELPK 97 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCC-ccCH
Confidence 3344555443 5678888887766433 24556777777777776653211 111345666666666665322 111
Q ss_pred --cCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcE
Q 015886 204 --LVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY 281 (398)
Q Consensus 204 --i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 281 (398)
+..+++|+.|++.++ .+..+. ...+..+++|+.|+++++.+.... ...+..+++|+.
T Consensus 98 ~~f~~l~~L~~L~L~~N-~l~~~~-------------------~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~ 156 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNAN-KINCLR-------------------VDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQT 156 (220)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCC-------------------TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCE
T ss_pred hHccCCCCCCEEECCCC-CCCEeC-------------------HHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCE
Confidence 223445555555544 111111 113455666666666666654421 122445667777
Q ss_pred EeccC
Q 015886 282 LSMTK 286 (398)
Q Consensus 282 L~l~~ 286 (398)
|++++
T Consensus 157 L~L~~ 161 (220)
T 2v9t_B 157 MHLAQ 161 (220)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 77766
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.42 E-value=1.7e-07 Score=86.86 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=83.9
Q ss_pred cccCCccccCCCCeeEEEEeccccCCC--Cccc-cCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--
Q 015886 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENV-KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (398)
Q Consensus 128 ~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~-- 202 (398)
...+|..+. +.++.|+|+++.+... ..+. .+++|+.|+|+++.++.-.- ..+..+++|+.|+|+++.. ..+
T Consensus 30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l-~~~~~ 105 (361)
T 2xot_A 30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNHL-HTLDE 105 (361)
T ss_dssp CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCC-CEECT
T ss_pred cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCcC-CcCCH
Confidence 334554432 4467777777766433 2233 67777777777776632111 1245677777777777643 222
Q ss_pred -ecCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccceeEe-e---cCCCCCceEEeeccCCchHHHhhhh
Q 015886 203 -DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEVN-V---SSCGNLKCLKFDFLPIEDEWLCNGI 273 (398)
Q Consensus 203 -~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (398)
.+..+++|+.|++.++ .+..+. ...++|+.|+++++........ + ..+++|+.|+|+++.+...... .+
T Consensus 106 ~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~-~~ 183 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT-DL 183 (361)
T ss_dssp TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH-HH
T ss_pred HHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH-Hh
Confidence 1344677777777776 233332 2456777777776652221111 1 4577777788777766542211 12
Q ss_pred cCCCC--CcEEeccC
Q 015886 274 SKLPL--LEYLSMTK 286 (398)
Q Consensus 274 ~~~~~--L~~L~l~~ 286 (398)
..+++ ++.|++.+
T Consensus 184 ~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 184 QKLPAWVKNGLYLHN 198 (361)
T ss_dssp HHSCHHHHTTEECCS
T ss_pred hhccHhhcceEEecC
Confidence 33454 36677776
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.42 E-value=1.5e-07 Score=81.31 Aligned_cols=143 Identities=15% Similarity=0.052 Sum_probs=86.9
Q ss_pred eEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee---cCCCCCCceEEEecC
Q 015886 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD---LVNLSNLKEIILVNT 218 (398)
Q Consensus 142 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~---i~~~~~L~~L~l~~~ 218 (398)
+.++.++..+...+. .-.++|+.|+|+++.+..-. ...+..+++|+.|+++++.. ..+. +..+++|+.|++++
T Consensus 22 ~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~- 97 (229)
T 3e6j_A 22 TTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT- 97 (229)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS-
T ss_pred CEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC-
Confidence 446666655543222 22377888888887763211 12245667777777776643 2221 12334455555544
Q ss_pred CCcceeeecccCceEEEEeeeecccee-EeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcccccccc---
Q 015886 219 SDIKRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--- 294 (398)
Q Consensus 219 ~~l~~~~~~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~--- 294 (398)
+...... ..+..+++|+.|+++++.+.. +...+..+++|+.|+++++ .++.+.
T Consensus 98 --------------------N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~~~ 154 (229)
T 3e6j_A 98 --------------------NQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQN-QLKSIPHGA 154 (229)
T ss_dssp --------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSS-CCCCCCTTT
T ss_pred --------------------CcCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCC-cCCccCHHH
Confidence 4311111 135778999999999998873 3334578899999999996 344443
Q ss_pred -ccccccceEeccccccc
Q 015886 295 -ISSPCLKTLILECCDKL 311 (398)
Q Consensus 295 -~~~~~L~~L~l~~c~~~ 311 (398)
..+++|+.|++.+++..
T Consensus 155 ~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTCTTCCEEECTTSCBC
T ss_pred HhCCCCCCEEEeeCCCcc
Confidence 25789999999987643
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.38 E-value=5.3e-07 Score=74.33 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=16.8
Q ss_pred cCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886 249 SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (398)
..+++|+.|+++++.+..-.....+..+++|+.|+++++
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC
Confidence 344555555555444432111112334455555555553
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.34 E-value=2.6e-07 Score=79.25 Aligned_cols=143 Identities=13% Similarity=0.093 Sum_probs=88.4
Q ss_pred eEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEEEecCC
Q 015886 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTS 219 (398)
Q Consensus 142 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~ 219 (398)
+.++++++.+...+. .-.+.++.|+|+++.++.......+..+++|+.|+++++...... .+..+++|+.|+++++
T Consensus 14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N- 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN- 91 (220)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-
Confidence 356666665543221 223467888888877633211122467788888888877533211 2445688888888877
Q ss_pred Ccceee----ecccCceEEEEeeeeccce-eEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886 220 DIKRVE----IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 220 ~l~~~~----~~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (398)
.+..+. ..+++|++|+++++..... ...+..+++|+.|+++++.+.... ...+..+++|+.|+++++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCc
Confidence 222222 2567888888887762221 234567888888888888765532 233566788888888884
No 128
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.34 E-value=2.3e-07 Score=79.59 Aligned_cols=144 Identities=12% Similarity=0.064 Sum_probs=81.5
Q ss_pred EEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce--eecCCCCCCceEEEecCCC
Q 015886 143 VLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIILVNTSD 220 (398)
Q Consensus 143 ~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~~i~~~~~L~~L~l~~~~~ 220 (398)
.+++.++.+...+.. -.++|+.|+|+++.+..-.- ..+..+++|+.|+++++..... -.+.
T Consensus 15 ~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~--------------- 77 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNNQISELAPDAFQ--------------- 77 (220)
T ss_dssp EEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSSCCCEECTTTTT---------------
T ss_pred EEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCCCcCCCcCHHHhh---------------
Confidence 455555554432211 12567777777665521110 1134456666666665532111 0122
Q ss_pred cceeeecccCceEEEEeeeecccee-EeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----
Q 015886 221 IKRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---- 295 (398)
Q Consensus 221 l~~~~~~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---- 295 (398)
..++|++|+++++...... ..+..+++|+.|+++++.+.... ...+..+++|+.|+++++. ++.+..
T Consensus 78 ------~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~ 149 (220)
T 2v9t_B 78 ------GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR-VDAFQDLHNLNLLSLYDNK-LQTIAKGTFS 149 (220)
T ss_dssp ------TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred ------CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeC-HHHcCCCCCCCEEECCCCc-CCEECHHHHh
Confidence 2345555555554421111 12567899999999988876532 2346678999999999963 333332
Q ss_pred cccccceEeccccccc
Q 015886 296 SSPCLKTLILECCDKL 311 (398)
Q Consensus 296 ~~~~L~~L~l~~c~~~ 311 (398)
.+++|+.|++++++..
T Consensus 150 ~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred CCCCCCEEEeCCCCcC
Confidence 5788999999987753
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=3.7e-06 Score=76.68 Aligned_cols=91 Identities=16% Similarity=0.088 Sum_probs=45.0
Q ss_pred CCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccc-eEeccccc-cc-eeccccCCCcce
Q 015886 251 CGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLK-TLILECCD-KL-IQVEIETPNLSI 323 (398)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~-~L~l~~c~-~~-~~~~~~~p~L~~ 323 (398)
+++|+.+++..+.+..- ....+..|++|+.|++.. +++.++. .+++|+ .+.+.+-- .+ ......+++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCE
Confidence 55666666665443321 122345566666666655 2444443 344565 56554410 11 123345556666
Q ss_pred EEEeccce-----eecccccccccee
Q 015886 324 FKYHGDLI-----SFSSNALSLSETS 344 (398)
Q Consensus 324 l~~~~~~~-----~~~~~~~~L~~l~ 344 (398)
+.+.+... .++.++++|+++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 66544433 4555566666554
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.30 E-value=3.8e-07 Score=84.51 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=100.6
Q ss_pred eEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHh-cCccccEEEeeecCCccee---ecCCCCCCceEEEec
Q 015886 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLIS-GCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVN 217 (398)
Q Consensus 142 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~cp~Le~L~l~~~~~~~~~---~i~~~~~L~~L~l~~ 217 (398)
+.++++++.+...+. .-.+.++.|+|+++.++.-... .+. .+++|+.|+++++... .+ .+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCC
Confidence 467777776654322 2235689999999887432211 133 7899999999887543 22 245578999999988
Q ss_pred CCCcceeee----cccCceEEEEeeeeccce-eEeecCCCCCceEEeeccCCchHHHhhhh---cCCCCCcEEeccCccc
Q 015886 218 TSDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGI---SKLPLLEYLSMTKCHK 289 (398)
Q Consensus 218 ~~~l~~~~~----~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~c~~ 289 (398)
+ .+..+.. ..++|+.|+++++..... ...+..+++|+.|+|+++.+..-.. ..+ ..+++|+.|+|+++ .
T Consensus 98 N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N-~ 174 (361)
T 2xot_A 98 N-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSN-K 174 (361)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSS-C
T ss_pred C-cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCC-C
Confidence 7 3444432 567888888887762221 1245677888888888877655211 112 45788888888885 3
Q ss_pred cccccc----cccc--cceEecccccc
Q 015886 290 LTSVRI----SSPC--LKTLILECCDK 310 (398)
Q Consensus 290 ~~~~~~----~~~~--L~~L~l~~c~~ 310 (398)
++.++. .++. ++.|++.+++.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCc
Confidence 344332 2333 46677766544
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.28 E-value=6.7e-08 Score=81.47 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=44.0
Q ss_pred cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcc
Q 015886 227 KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (398)
Q Consensus 227 ~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (398)
.+++|++|+++++...... .+..+++|+.|+++++.+........+..+++|+.|+++++.
T Consensus 91 ~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred cCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 3477888888877632222 467788999999998888764333456778999999998863
No 132
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.28 E-value=1.6e-07 Score=87.16 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=89.2
Q ss_pred CCeeEEEEeccccCCC--C----c-cccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce-e-ec-----
Q 015886 139 ESLHVLELSYCKLQQP--S----E-NVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES-L-DL----- 204 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~--~----~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~-~-~i----- 204 (398)
++|++|++++|.+... . . ....++|+.|+|++|.+++..+..+...+++|++|++++|..-.. . .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4577777777765432 0 0 112356777777777776666666666666677777766632210 0 00
Q ss_pred CCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHH---hhhhcCCCCCcE
Q 015886 205 VNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWL---CNGISKLPLLEY 281 (398)
Q Consensus 205 ~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~ 281 (398)
...++|+.|++++| .+.... .......+...++|++|+|++|.+++... ...+...++|+.
T Consensus 152 ~~~~~L~~L~Ls~n-~l~~~~---------------~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~ 215 (372)
T 3un9_A 152 HDQCQITTLRLSNN-PLTAAG---------------VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE 215 (372)
T ss_dssp STTCCCCEEECCSS-CCHHHH---------------HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCE
T ss_pred hcCCccceeeCCCC-CCChHH---------------HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCe
Confidence 11234444444444 111100 00011123567889999999998887543 344566789999
Q ss_pred EeccCccccccccc--------cccccceEeccccccc
Q 015886 282 LSMTKCHKLTSVRI--------SSPCLKTLILECCDKL 311 (398)
Q Consensus 282 L~l~~c~~~~~~~~--------~~~~L~~L~l~~c~~~ 311 (398)
|+|++|. +++.+. ..+.|++|++++|..-
T Consensus 216 L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 216 LNVAYNG-AGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp EECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred EECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 9999973 332221 3478899999888753
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=1.5e-06 Score=85.32 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=51.2
Q ss_pred ccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEEEecCCCcceee--ecccCceEEEEe
Q 015886 162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIH 237 (398)
Q Consensus 162 ~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~--~~~p~L~~l~l~ 237 (398)
.|+.|+|+++.++. +.. +..+++|+.|++++|... .+ .+..+++|+.|+++++ .+..++ ..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECC
Confidence 57777777776632 223 566777888888776433 22 3445677888888776 222221 133444444444
Q ss_pred eeeccce--eEeecCCCCCceEEeeccCC
Q 015886 238 QTYLFPI--EVNVSSCGNLKCLKFDFLPI 264 (398)
Q Consensus 238 ~~~~~~~--~~~~~~~~~L~~L~l~~~~~ 264 (398)
++..... ...++.+++|+.|+++++.+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 4431111 22334455555555554444
No 134
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.07 E-value=1.7e-06 Score=76.32 Aligned_cols=36 Identities=36% Similarity=0.708 Sum_probs=33.8
Q ss_pred ccCCCCCHHHHHHHhccCChhHHH-HHhhcccchhhh
Q 015886 10 DGISTLPEPILHHILSFLPFKEVA-QTCLLSKRWKQV 45 (398)
Q Consensus 10 D~i~~LPdeiL~~I~s~L~~~~~~-~~~~vskrWr~l 45 (398)
..+..||+|++.+||++||.++++ +++.|||+|+.+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 467899999999999999999999 999999999976
No 135
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.03 E-value=8.4e-07 Score=77.35 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=32.2
Q ss_pred cCCCCCHHHHHHHhccCChhHHHHHhhcccchhh
Q 015886 11 GISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQ 44 (398)
Q Consensus 11 ~i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~ 44 (398)
.++.||+||+.+||+||+++|+++++.|||+||.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999995
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=1.4e-05 Score=72.91 Aligned_cols=206 Identities=12% Similarity=0.026 Sum_probs=119.7
Q ss_pred CCCeeEEEEeccccCCC-Ccccc-CcccceEEEEEEEeC--H---HHH--------------HHHHhc--------Cccc
Q 015886 138 VESLHVLELSYCKLQQP-SENVK-LFSLRKLALREVCAD--D---QAI--------------ASLISG--------CPLI 188 (398)
Q Consensus 138 ~~~L~~L~L~~~~l~~~-~~~~~-~~~L~~L~L~~~~~~--~---~~l--------------~~l~~~--------cp~L 188 (398)
..+|++|.+.+.--... ..... +++|+.|+|+++.+. . ..+ ...+.+ |++|
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 45688888887421110 11222 788999999988875 0 000 122445 8888
Q ss_pred cEEEeeecCCcceee---cCCCCCCceEEEecCCCcceeee----cccCceEEEEeeeec-----cceeEeec-------
Q 015886 189 EYLEIRSCEGLESLD---LVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYL-----FPIEVNVS------- 249 (398)
Q Consensus 189 e~L~l~~~~~~~~~~---i~~~~~L~~L~l~~~~~l~~~~~----~~p~L~~l~l~~~~~-----~~~~~~~~------- 249 (398)
++|.+.+ .+..+. ...|++|+.+.+... .+..+.- .+.++..+....... .-....+.
T Consensus 104 ~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 104 EKVILSE--KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp CC-CBCT--TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred cEEECCc--cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 8888876 444433 345678888888765 2222221 233444443322100 00000011
Q ss_pred -------------------CCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEecc
Q 015886 250 -------------------SCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILE 306 (398)
Q Consensus 250 -------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~ 306 (398)
...+++.+.+.+. +.......+...|++|+.|++.++ .++.++. .+++|+.+.+.
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECC
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECC
Confidence 1334455555543 333444555556899999999985 3566655 57789999997
Q ss_pred cccc-c-eeccccCCCcc-eEEEeccce-----eeccccccccceeeeecc
Q 015886 307 CCDK-L-IQVEIETPNLS-IFKYHGDLI-----SFSSNALSLSETSLCFSS 349 (398)
Q Consensus 307 ~c~~-~-~~~~~~~p~L~-~l~~~~~~~-----~~~~~~~~L~~l~i~~~~ 349 (398)
+.-. + ......+++|+ .+.+.+ .. ..+.++++|+++.+..+.
T Consensus 259 ~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 259 HNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred cccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence 6411 1 23457788899 999977 33 788899999999995544
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.97 E-value=1e-05 Score=75.78 Aligned_cols=204 Identities=11% Similarity=0.095 Sum_probs=111.3
Q ss_pred cCCccccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEe---CHHHHHHHHhcCccccEEEeeecCCcceee--
Q 015886 130 NLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA---DDQAIASLISGCPLIEYLEIRSCEGLESLD-- 203 (398)
Q Consensus 130 ~l~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~-- 203 (398)
.++...|...+|+.+.+...-.... ..+..|++|+.++|..+.+ .+..+ .|+.|+.+.+... +..+.
T Consensus 148 ~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~--l~~I~~~ 220 (401)
T 4fdw_A 148 SIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVT--LKEIGSQ 220 (401)
T ss_dssp EECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTT--CCEECTT
T ss_pred EECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCCc--hheehhh
Confidence 3344333334566666665211111 4456677777777764433 32222 2567777776532 33332
Q ss_pred -cCCCCCCceEEEecCCCcceeee---cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCch----HHHhhhhcC
Q 015886 204 -LVNLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED----EWLCNGISK 275 (398)
Q Consensus 204 -i~~~~~L~~L~l~~~~~l~~~~~---~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~ 275 (398)
...|++|+.+.+.. ++..+.. ...+|+++.+...-..-....|..|++|+.+.+.++.... ..-...+..
T Consensus 221 aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~ 298 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG 298 (401)
T ss_dssp TTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT
T ss_pred HhhCCCCCCEEecCC--CccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC
Confidence 33457777777764 2333332 2256777777433211111235678888988887654431 112344667
Q ss_pred CCCCcEEeccCccccccccc----cccccceEecccccc-c-eeccccCCCcceEEEeccce-----eecccc-ccccce
Q 015886 276 LPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDK-L-IQVEIETPNLSIFKYHGDLI-----SFSSNA-LSLSET 343 (398)
Q Consensus 276 ~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~~-~-~~~~~~~p~L~~l~~~~~~~-----~~~~~~-~~L~~l 343 (398)
|++|+.+.+.. .++.++. .+.+|+.+.|...-. + ......+ +|+.+.+.+... ..+.++ ..+.++
T Consensus 299 c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l 375 (401)
T 4fdw_A 299 CPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVI 375 (401)
T ss_dssp CTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEE
T ss_pred CccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEE
Confidence 88899888875 4555554 457788887744311 1 2334556 788888877655 333333 356666
Q ss_pred ee
Q 015886 344 SL 345 (398)
Q Consensus 344 ~i 345 (398)
.+
T Consensus 376 ~v 377 (401)
T 4fdw_A 376 RV 377 (401)
T ss_dssp EE
T ss_pred Ee
Confidence 66
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.95 E-value=2.9e-06 Score=85.91 Aligned_cols=108 Identities=16% Similarity=0.147 Sum_probs=56.7
Q ss_pred CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEEEecCCCcceee---eccc
Q 015886 155 SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTS 229 (398)
Q Consensus 155 ~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~---~~~p 229 (398)
.....+++|+.|+|+++.+.. +..-+..++.|+.|+|++|... .+ .+..+++|+.|+++++ .+..++ ..++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp ----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred hhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 345556677777777666521 1111235677777777666432 22 2334566777777666 222222 2455
Q ss_pred CceEEEEeeeeccceeEeecCCCCCceEEeeccCCch
Q 015886 230 NVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (398)
Q Consensus 230 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (398)
+|++|+++++........++.+++|+.|+|+++.+..
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 6666666666533333345666666666666666554
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.88 E-value=1.5e-05 Score=78.16 Aligned_cols=185 Identities=18% Similarity=0.134 Sum_probs=121.2
Q ss_pred cCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEe------------CHHHHHHHHhcCccccEEE-eeecCC--c
Q 015886 136 FYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA------------DDQAIASLISGCPLIEYLE-IRSCEG--L 199 (398)
Q Consensus 136 ~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~------------~~~~l~~l~~~cp~Le~L~-l~~~~~--~ 199 (398)
..+++|+.|+|+++.+... .....+++|+.|+++++.. ........+..+++|+.|+ +..+.. +
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 4467777788887765422 4456677888887755431 1122334566778888887 443211 1
Q ss_pred cee-----ecCC--CCCCceEEEecC--CCcceeeecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHh
Q 015886 200 ESL-----DLVN--LSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (398)
Q Consensus 200 ~~~-----~i~~--~~~L~~L~l~~~--~~l~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (398)
..+ .+.. ...|+.|+++++ ..+.. ...+++|+.|+++++.....+..++.+++|+.|+++++.+.. +.
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence 110 1111 246899999988 22322 236789999999998844444567899999999999998876 23
Q ss_pred hhhcCCCCCcEEeccCccccccc--c---ccccccceEeccccccce------eccccCCCcceEE
Q 015886 271 NGISKLPLLEYLSMTKCHKLTSV--R---ISSPCLKTLILECCDKLI------QVEIETPNLSIFK 325 (398)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~~~~~--~---~~~~~L~~L~l~~c~~~~------~~~~~~p~L~~l~ 325 (398)
.+..+++|+.|+++++ .++.+ + ..+++|+.|+++++.... .+...+|+|+.|.
T Consensus 503 -~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 -GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 4778999999999996 33433 2 267899999999987642 2234477887763
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.85 E-value=9.2e-06 Score=67.82 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=61.1
Q ss_pred cccCCccccCCCCeeEEEEeccccCCCC---ccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--
Q 015886 128 RRNLPEIIFYVESLHVLELSYCKLQQPS---ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (398)
Q Consensus 128 ~~~l~~~~~~~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~-- 202 (398)
...+|..+.. +|++|+++++.+...+ .+..+++|++|+|+++.++.-. ...+..++.|+.|+++++......
T Consensus 20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~ 96 (192)
T 1w8a_A 20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNK 96 (192)
T ss_dssp CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHH
Confidence 3455554432 6777888777664431 2556777777777777663211 112345566666666665332111
Q ss_pred ecCCCCCCceEEEecCCCcceeeecccCceEEEEeeeeccc-eeEeecCCCCCceEEeeccCCc
Q 015886 203 DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIE 265 (398)
Q Consensus 203 ~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 265 (398)
.+..++ +|++|+++++.... ....+..+++|+.|+++++.+.
T Consensus 97 ~~~~l~---------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 97 MFLGLH---------------------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SSTTCT---------------------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred HhcCCC---------------------CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 122234 44555544443111 1123567788888888877654
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.81 E-value=5.7e-06 Score=69.13 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=71.9
Q ss_pred eEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcce--eecCCCCCCceEEEecCC
Q 015886 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIILVNTS 219 (398)
Q Consensus 142 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~--~~i~~~~~L~~L~l~~~~ 219 (398)
+.++++++.+...+. .-.++|+.|+++++.++.-.....+..+++|+.|+++++..... -.+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-- 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-- 87 (192)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS--
T ss_pred CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC--
Confidence 567777776643322 12337888888877663211111245566777777766533211 1122334455555444
Q ss_pred CcceeeecccCceEEEEeeeeccce-eEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886 220 DIKRVEIKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 220 ~l~~~~~~~p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (398)
+..... ...+..+++|+.|+++++.+.... ...+..+++|+.|+++++
T Consensus 88 -------------------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 88 -------------------NKIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp -------------------CCCCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTC
T ss_pred -------------------CcCCccCHHHhcCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCC
Confidence 431111 123678899999999999887532 234567899999999995
No 142
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.80 E-value=4.6e-06 Score=79.49 Aligned_cols=40 Identities=25% Similarity=0.540 Sum_probs=36.7
Q ss_pred CCccCCCCCHHHHHHHhccCChhHHHHHhhcccchhhhhc
Q 015886 8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQ 47 (398)
Q Consensus 8 ~~D~i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~lw~ 47 (398)
..|.|+.||+|++.+||+||+.++++++++|||+|+++..
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 5688999999999999999999999999999999997543
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.79 E-value=1.8e-05 Score=65.00 Aligned_cols=106 Identities=19% Similarity=0.103 Sum_probs=54.3
Q ss_pred CCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEE
Q 015886 139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII 214 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~ 214 (398)
++|++|+++++.+... .....+++|++|+++++.++.-. ...+..+++|+.|+++++...... .+.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--------- 97 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSLPNGVFD--------- 97 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTT---------
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCccccCHHHhh---------
Confidence 5677777777665433 22355666777777666552110 111344556666666554321110 012
Q ss_pred EecCCCcceeeecccCceEEEEeeeeccceeE-eecCCCCCceEEeeccCCch
Q 015886 215 LVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIED 266 (398)
Q Consensus 215 l~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 266 (398)
..++|++|+++++....... .+..+++|++|+++++.+..
T Consensus 98 ------------~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 98 ------------KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ------------CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 23445555555444111111 24567888888888777643
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.78 E-value=1.8e-05 Score=66.14 Aligned_cols=105 Identities=11% Similarity=0.004 Sum_probs=50.9
Q ss_pred CCeeEEEEeccccCCC-CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCccee--ecCCCCCCceEEE
Q 015886 139 ESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIIL 215 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~~L~~L~l 215 (398)
++|++|+++++.+... ..+..+++|+.|+|+++.++.-.- ..+.+++.|+.|+++++...... .+.
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~---------- 99 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYNRLRCIPPRTFD---------- 99 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTT----------
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCH-hHccCCCCCCEEECCCCccCEeCHHHhC----------
Confidence 4566666666655432 334455566666665555421110 11334455555555544321100 122
Q ss_pred ecCCCcceeeecccCceEEEEeeeeccceeE-eecCCCCCceEEeeccCCc
Q 015886 216 VNTSDIKRVEIKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIE 265 (398)
Q Consensus 216 ~~~~~l~~~~~~~p~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 265 (398)
..++|+.|+++++....... .+..+++|+.|+++++.+.
T Consensus 100 -----------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 100 -----------GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp -----------TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred -----------CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 23455555555544211111 2456788888888876653
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.73 E-value=1.7e-05 Score=65.15 Aligned_cols=125 Identities=14% Similarity=0.034 Sum_probs=68.8
Q ss_pred eEEEEeccccCCCCccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceeecCCCCCCceEEEecCCCc
Q 015886 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDI 221 (398)
Q Consensus 142 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~i~~~~~L~~L~l~~~~~l 221 (398)
+.+++.++.+...+ ....++|+.|+++++.+..- ....+..+++|+.|++.++... .+.-
T Consensus 10 ~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~-~~~~----------------- 69 (177)
T 2o6r_A 10 TEIRCNSKGLTSVP-TGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQ-SLPD----------------- 69 (177)
T ss_dssp TEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCC-CCCT-----------------
T ss_pred CEEEecCCCCccCC-CCCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcce-EeCh-----------------
Confidence 45566665554322 22235777777777665311 1112345566666666655321 1110
Q ss_pred ceeeecccCceEEEEeeeecccee-EeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCcc
Q 015886 222 KRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (398)
Q Consensus 222 ~~~~~~~p~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (398)
......++|+.|+++++...... ..+..+++|+.|+++++.+... ....+..+++|+.|++++++
T Consensus 70 -~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 70 -GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp -TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred -hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCC
Confidence 00013445555555554421111 1257789999999999887642 23445678999999999963
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.73 E-value=1.2e-05 Score=81.31 Aligned_cols=143 Identities=15% Similarity=0.147 Sum_probs=72.2
Q ss_pred CCeeEEEEeccccCCCCccccCcccceEEEEEEEeCHH--------HHHHHHhcCccccEEEeeecCCccee--ecCCCC
Q 015886 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQ--------AIASLISGCPLIEYLEIRSCEGLESL--DLVNLS 208 (398)
Q Consensus 139 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~--------~l~~l~~~cp~Le~L~l~~~~~~~~~--~i~~~~ 208 (398)
++++.|+|.++.+... .-..|+.++|+.+.++.. .....+..++.|+.|+|++|... .+ .+..++
T Consensus 173 ~~~~~l~L~~n~~~~~----~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA----NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC
T ss_pred CccceEEeeCCCCCcc----hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCC
Confidence 5577888877665432 222344444444443211 12344667889999999887643 22 233568
Q ss_pred CCceEEEecCCCcceee---ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEecc
Q 015886 209 NLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMT 285 (398)
Q Consensus 209 ~L~~L~l~~~~~l~~~~---~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 285 (398)
+|+.|.++++ .+..++ ..+++|+.|+++++........++.+++|+.|+|+++.+.. +...+..+++|+.|+|+
T Consensus 248 ~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCC
Confidence 8999999887 333333 26788888888888744444557788888888888887752 23336678888888888
Q ss_pred Cccc
Q 015886 286 KCHK 289 (398)
Q Consensus 286 ~c~~ 289 (398)
++.-
T Consensus 325 ~N~l 328 (727)
T 4b8c_D 325 GNPL 328 (727)
T ss_dssp TSCC
T ss_pred CCcc
Confidence 8643
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.73 E-value=2.2e-05 Score=65.62 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=71.3
Q ss_pred CCCeEEEEEecCCccccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEE
Q 015886 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L 191 (398)
+++++|+++.... ..+|..+..+++|+.|+++++.+... ..+..+++|++|+|+++.+..-.- ..+..+++|+.|
T Consensus 31 ~~l~~L~L~~n~i--~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP-RTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCC--CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEE
T ss_pred CCCCEEECCCCcC--chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH-HHhCCCCCCCEE
Confidence 4788888886433 36777788899999999999988655 457789999999999998832211 125678999999
Q ss_pred EeeecCCccee--ecCCCCCCceEEEecC
Q 015886 192 EIRSCEGLESL--DLVNLSNLKEIILVNT 218 (398)
Q Consensus 192 ~l~~~~~~~~~--~i~~~~~L~~L~l~~~ 218 (398)
+++++....-. .+..+++|+.|.+.++
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 108 SLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 99987543211 1223455666555544
No 148
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.59 E-value=3.3e-05 Score=73.23 Aligned_cols=38 Identities=32% Similarity=0.486 Sum_probs=35.8
Q ss_pred cCCccCCCCCHHHHHHHhccCChhHHHHHhhcccchhh
Q 015886 7 LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQ 44 (398)
Q Consensus 7 ~~~D~i~~LPdeiL~~I~s~L~~~~~~~~~~vskrWr~ 44 (398)
...|.++.||+|++.+||+||+.+++++++.|||+|++
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~ 51 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI 51 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred ccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence 35699999999999999999999999999999999986
No 149
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.53 E-value=1.6e-05 Score=75.22 Aligned_cols=37 Identities=35% Similarity=0.567 Sum_probs=35.2
Q ss_pred CCccCCCCCHH----HHHHHhccCChhHHHHHhhcccchhh
Q 015886 8 EVDGISTLPEP----ILHHILSFLPFKEVAQTCLLSKRWKQ 44 (398)
Q Consensus 8 ~~D~i~~LPde----iL~~I~s~L~~~~~~~~~~vskrWr~ 44 (398)
..|.|+.||+| |+.+||+||+.++++++++|||+|++
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 56899999999 99999999999999999999999995
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.46 E-value=4.4e-05 Score=63.26 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=18.9
Q ss_pred cCCCCCceEEe--eccCCchHH---HhhhhcCCCCCcEEeccCc
Q 015886 249 SSCGNLKCLKF--DFLPIEDEW---LCNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 249 ~~~~~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~L~l~~c 287 (398)
...++|++|+| +++.++++. +...+...++|+.|+++++
T Consensus 118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 33445555555 455555533 2233334455555555553
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.38 E-value=0.00013 Score=59.49 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=38.6
Q ss_pred cccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecC
Q 015886 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE 197 (398)
Q Consensus 128 ~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~ 197 (398)
...+|..+. ++|++|+|+++.+... ..+..+++|++|+|+++.+..-. ...+..+++|+.|+++++.
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCc
Confidence 344555442 6677777777766543 33556777777777777663111 1123456666666666653
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.32 E-value=0.00017 Score=58.96 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=37.4
Q ss_pred ccCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeec
Q 015886 129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC 196 (398)
Q Consensus 129 ~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~ 196 (398)
..+|..+. ++|++|+++++.+... ..+..+++|+.|+|+++.++.-. ...+..+++|+.|+++++
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCC
Confidence 45555443 6677777777766543 33556777777777776653210 112345566666666655
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.27 E-value=0.00058 Score=63.80 Aligned_cols=198 Identities=15% Similarity=0.191 Sum_probs=123.5
Q ss_pred CCCeEEEEEecCCccccCCc-cccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEE--eCHHHHHHHHhcCcccc
Q 015886 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVC--ADDQAIASLISGCPLIE 189 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le 189 (398)
++++++.+.. ....++. .+..|++|+.+++..+.+..- .....+.+|+.+.|.... +++.. +.+|++|+
T Consensus 157 ~~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~a----F~~~~~L~ 229 (401)
T 4fdw_A 157 STVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQA----FLKTSQLK 229 (401)
T ss_dssp CCCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTT----TTTCTTCC
T ss_pred CCceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhH----hhCCCCCC
Confidence 3566665543 2234444 345689999999987655332 334447899999886431 13332 56899999
Q ss_pred EEEeeecCCcceee---cCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeecc------ceeEeecCCCCCce
Q 015886 190 YLEIRSCEGLESLD---LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLF------PIEVNVSSCGNLKC 256 (398)
Q Consensus 190 ~L~l~~~~~~~~~~---i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~------~~~~~~~~~~~L~~ 256 (398)
.+.+... +..+. ... .+|+.+.+.. .+..+. ..|++|+++.+.+.... -....|..|++|+.
T Consensus 230 ~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 230 TIEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR 304 (401)
T ss_dssp CEECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred EEecCCC--ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence 9999753 33333 233 6899998854 444443 26889999999876521 11124678999999
Q ss_pred EEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEeccccccc---eeccccCC-CcceEEEec
Q 015886 257 LKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKL---IQVEIETP-NLSIFKYHG 328 (398)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~~~---~~~~~~~p-~L~~l~~~~ 328 (398)
+.+... +..- -...+.+|++|+.+.|.. +++.++. .+ +|+.+.+.+.... ......+| ++..+.+..
T Consensus 305 l~l~~~-i~~I-~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 305 FEIPES-IRIL-GQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ECCCTT-CCEE-CTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred EEeCCc-eEEE-hhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 999732 2221 123467789999999966 4555554 45 8999988876443 12223333 566666644
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.19 E-value=0.00032 Score=65.46 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=51.3
Q ss_pred cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccce
Q 015886 227 KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKT 302 (398)
Q Consensus 227 ~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~ 302 (398)
.+.+|+.+.+......-....+..++.++.+......+.+ ..+..+.+|+.+.+.. .++.++. .+.+|+.
T Consensus 251 ~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~----~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 251 GCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE----KTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT----TTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCE
T ss_pred ccccceeEEcCCCcceeeccccccccccceeccCceeecc----cccccccccccccccc--ccceechhhhcCCCCCCE
Confidence 4455666665433211111123444555555544332221 1234456666666543 2333333 3345555
Q ss_pred Eecccc-ccc-eeccccCCCcceEEEeccce----eeccccccccceee
Q 015886 303 LILECC-DKL-IQVEIETPNLSIFKYHGDLI----SFSSNALSLSETSL 345 (398)
Q Consensus 303 L~l~~c-~~~-~~~~~~~p~L~~l~~~~~~~----~~~~~~~~L~~l~i 345 (398)
+.|... ..+ ......+.+|+++.+...-. .++.+|.+|+++.+
T Consensus 325 i~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 325 IDLPYLVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp ECCCTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEE
T ss_pred EEeCCcccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEE
Confidence 555321 111 12234455566555533211 56677777777777
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.13 E-value=0.0008 Score=55.51 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=13.1
Q ss_pred eeccccccccceeeeeccc
Q 015886 332 SFSSNALSLSETSLCFSSH 350 (398)
Q Consensus 332 ~~~~~~~~L~~l~i~~~~~ 350 (398)
..+...++|+++++..+..
T Consensus 145 ~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHCSSCCEEECCCSSH
T ss_pred HHHHhCCCcCEEeccCCCC
Confidence 3445567899999976653
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.05 E-value=0.00059 Score=55.45 Aligned_cols=39 Identities=21% Similarity=0.132 Sum_probs=19.2
Q ss_pred ecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (398)
+..+++|+.|+++++.+... ....+..+++|+.|+++++
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred hcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCC
Confidence 44555556666655554421 1122344555555555553
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.98 E-value=0.00086 Score=54.71 Aligned_cols=58 Identities=16% Similarity=0.116 Sum_probs=26.1
Q ss_pred cCceEEEEeeeeccce-eEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCc
Q 015886 229 SNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (398)
Q Consensus 229 p~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (398)
++|+.|+++++..... ...+..+++|+.|+|+++.+..- ....+..+++|+.|+++++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCC
Confidence 3444555544441111 11244555566666655554431 1122344555666665553
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.18 E-value=0.0025 Score=58.08 Aligned_cols=88 Identities=20% Similarity=0.136 Sum_probs=52.7
Q ss_pred ccccCCccccCCCCeeEEEEec-cccCCC--CccccCcccceEEEEEEEeCHHHHHHHHhcCccccEEEeeecCCcceee
Q 015886 127 ERRNLPEIIFYVESLHVLELSY-CKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD 203 (398)
Q Consensus 127 ~~~~l~~~~~~~~~L~~L~L~~-~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~ 203 (398)
....+|. +..+++|++|+|++ +.+... ..+..+++|+.|+|++|.+..-. ...+..+++|+.|+|+++... .+.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~-~~~ 96 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALE-SLS 96 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCS-CCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccc-eeC
Confidence 3445777 66677788888875 665433 34567778888888777663211 122456778888888776432 221
Q ss_pred ---cCCCCCCceEEEecC
Q 015886 204 ---LVNLSNLKEIILVNT 218 (398)
Q Consensus 204 ---i~~~~~L~~L~l~~~ 218 (398)
+.. .+|+.|.+.++
T Consensus 97 ~~~~~~-~~L~~l~l~~N 113 (347)
T 2ifg_A 97 WKTVQG-LSLQELVLSGN 113 (347)
T ss_dssp STTTCS-CCCCEEECCSS
T ss_pred HHHccc-CCceEEEeeCC
Confidence 112 23777777655
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.99 E-value=0.0076 Score=56.01 Aligned_cols=198 Identities=14% Similarity=0.097 Sum_probs=111.1
Q ss_pred ccCCCCeeEEEEeccccCCC-CccccCcccceEEEEEEEe--CHHHHHHHHhcCccccEEEeeecC-----------Ccc
Q 015886 135 IFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCE-----------GLE 200 (398)
Q Consensus 135 ~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~~~-----------~~~ 200 (398)
+..|++|+.+.+........ ..+..+++|+.+.+..... .+.. +..|+.|+.+.+.... .++
T Consensus 158 F~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~----F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 158 FATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKIIRDYC----FAECILLENMEFPNSLYYLGDFALSKTGVK 233 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTT----TTTCTTCCBCCCCTTCCEECTTTTTTCCCC
T ss_pred hcccCCCcEEecCCccceeccccccCCCCceEEEcCCCceEeCchh----hccccccceeecCCCceEeehhhcccCCCc
Confidence 44578888888866432222 4556677888777753311 2222 4566777766554321 111
Q ss_pred eee------------cCCCCCCceEEEecCCCcceee----ecccCceEEEEeeeeccceeEeecCCCCCceEEeeccCC
Q 015886 201 SLD------------LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI 264 (398)
Q Consensus 201 ~~~------------i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (398)
.+. ...+..|+.+.+... ...+. ..++.++...+...... ...+..+.+|+.+.+... +
T Consensus 234 ~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i 308 (394)
T 4fs7_A 234 NIIIPDSFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-V 308 (394)
T ss_dssp EEEECTTCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-C
T ss_pred eEEECCCceecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeec--cccccccccccccccccc-c
Confidence 111 112455665555432 12221 14556666655433210 113567888999888632 1
Q ss_pred chHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEecccc-ccc-eeccccCCCcceEEEeccce---eecc
Q 015886 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECC-DKL-IQVEIETPNLSIFKYHGDLI---SFSS 335 (398)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c-~~~-~~~~~~~p~L~~l~~~~~~~---~~~~ 335 (398)
.. .-...+..|.+|+.++|.. .++.++. .+.+|+.+.+... ..+ ......+++|+++.+...-. +.+.
T Consensus 309 ~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~ 385 (394)
T 4fs7_A 309 KF-IGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKRLEQYRYDFE 385 (394)
T ss_dssp CE-ECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGGGGGGGGGBC
T ss_pred ce-echhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCCCEEhhheec
Confidence 11 0122356789999999865 4555554 4678888887543 222 24457788999998866422 6777
Q ss_pred cccccccee
Q 015886 336 NALSLSETS 344 (398)
Q Consensus 336 ~~~~L~~l~ 344 (398)
++++|+.++
T Consensus 386 ~c~~L~~IK 394 (394)
T 4fs7_A 386 DTTKFKWIK 394 (394)
T ss_dssp TTCEEEEEC
T ss_pred CCCCCcEEC
Confidence 888887763
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.85 E-value=0.032 Score=51.72 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=54.5
Q ss_pred ecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEecccc-ccc-eeccccCCCc
Q 015886 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECC-DKL-IQVEIETPNL 321 (398)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c-~~~-~~~~~~~p~L 321 (398)
|..+.+|+.+.+...... .-...+..|++|+.+.+.. .++.++. .+.+|+.+.|... ..+ ......+.+|
T Consensus 261 F~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred eeecccccEEecccccce--ecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCC
Confidence 345667777776432211 0122345677777777754 3444444 4567777777432 222 2334566778
Q ss_pred ceEEEeccc--e--eeccccccccceeee
Q 015886 322 SIFKYHGDL--I--SFSSNALSLSETSLC 346 (398)
Q Consensus 322 ~~l~~~~~~--~--~~~~~~~~L~~l~i~ 346 (398)
+++.+...- + .++.+|.+|+++.+.
T Consensus 337 ~~i~ip~sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 337 ERIAIPSSVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp CEEEECTTCCBCCGGGGTTCTTCCEEEES
T ss_pred CEEEECcccCEEhHhHhhCCCCCCEEEEC
Confidence 887774321 1 777888888888874
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.40 E-value=0.0039 Score=54.41 Aligned_cols=79 Identities=25% Similarity=0.251 Sum_probs=38.5
Q ss_pred CCCeEEEEEecCCcc-ccCCccccCCCCeeEEEEeccccCCCCccccCc--ccceEEEEEEEeCH------HHHHHHHhc
Q 015886 114 SEVKELVLVHWRSER-RNLPEIIFYVESLHVLELSYCKLQQPSENVKLF--SLRKLALREVCADD------QAIASLISG 184 (398)
Q Consensus 114 ~~l~~L~l~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~--~L~~L~L~~~~~~~------~~l~~l~~~ 184 (398)
++|+.|+++.+.... ..++..+..+++|+.|+|+++.+........+. +|+.|.|.+|.+.. .....++..
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~ 249 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER 249 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence 466666665532221 123344445566666666666554332222222 56666666655521 122344555
Q ss_pred CccccEEE
Q 015886 185 CPLIEYLE 192 (398)
Q Consensus 185 cp~Le~L~ 192 (398)
+|+|+.|+
T Consensus 250 ~P~L~~LD 257 (267)
T 3rw6_A 250 FPKLLRLD 257 (267)
T ss_dssp CTTCCEES
T ss_pred CcccCeEC
Confidence 66666554
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.38 E-value=0.0077 Score=52.56 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=20.4
Q ss_pred CCceEEeeccCCch------HHHhhhhcCCCCCcEEecc
Q 015886 253 NLKCLKFDFLPIED------EWLCNGISKLPLLEYLSMT 285 (398)
Q Consensus 253 ~L~~L~l~~~~~~~------~~~~~~~~~~~~L~~L~l~ 285 (398)
+|++|++.++.+.. .-...++..+|+|+.|+-.
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 67777777766653 2223456667777777643
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.34 E-value=0.11 Score=48.11 Aligned_cols=117 Identities=11% Similarity=0.109 Sum_probs=68.2
Q ss_pred cccCceEEEEeeeeccceeEeecCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccce
Q 015886 227 KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKT 302 (398)
Q Consensus 227 ~~p~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~ 302 (398)
.+.+|+++.+......-....+..+++|+.+.+... +.. .-...+..|.+|+.+.|.. .++.++. .+.+|+.
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~-i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR-ITE-LPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLER 338 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCE
T ss_pred ecccccEEecccccceecCcccccccccccccCCCc-ccc-cCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCE
Confidence 456677776643321100113466788999888532 111 1123466789999999965 4566554 5678888
Q ss_pred Eecccc-ccc-eeccccCCCcceEEEeccce--eeccccccccceeeee
Q 015886 303 LILECC-DKL-IQVEIETPNLSIFKYHGDLI--SFSSNALSLSETSLCF 347 (398)
Q Consensus 303 L~l~~c-~~~-~~~~~~~p~L~~l~~~~~~~--~~~~~~~~L~~l~i~~ 347 (398)
+.|-.. ..+ ......+++|+++.+.+... ..+..+..|+.+.+..
T Consensus 339 i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 339 IAIPSSVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAP 387 (394)
T ss_dssp EEECTTCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-------
T ss_pred EEECcccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCC
Confidence 888432 223 34557788999999988655 4456677888888843
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.45 E-value=0.034 Score=50.44 Aligned_cols=73 Identities=14% Similarity=0.038 Sum_probs=36.3
Q ss_pred EEEecc-ccCCCCccccCcccceEEEEE-EEeCHHHHHHHHhcCccccEEEeeecCCccee---ecCCCCCCceEEEecC
Q 015886 144 LELSYC-KLQQPSENVKLFSLRKLALRE-VCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNT 218 (398)
Q Consensus 144 L~L~~~-~l~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~---~i~~~~~L~~L~l~~~ 218 (398)
+++++. .+...+....+++|+.|+|++ +.+..-. ...+..+++|+.|+|++|. +..+ .+..+++|+.|+++++
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC
Confidence 455554 443332255566677777764 5542110 0113456666677666653 2222 1233455666666554
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.32 E-value=1.3 Score=40.42 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=36.4
Q ss_pred cCCCCCcEEeccCccccccccc----cccccceEeccccc--cc-eeccccCCCcceEEEecc-ce---eeccccccccc
Q 015886 274 SKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCD--KL-IQVEIETPNLSIFKYHGD-LI---SFSSNALSLSE 342 (398)
Q Consensus 274 ~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~c~--~~-~~~~~~~p~L~~l~~~~~-~~---~~~~~~~~L~~ 342 (398)
..+.+|+.+.+.. .++.++. .+.+|+.+.+.+.. .+ ......+.+|+++.+... .. .++.+|.+|++
T Consensus 260 ~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 260 QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALST 337 (379)
T ss_dssp TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCC
T ss_pred ceeehhccccccc--cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCE
Confidence 3455555555533 2333332 34566666664432 12 233455666777666432 11 66677777777
Q ss_pred eee
Q 015886 343 TSL 345 (398)
Q Consensus 343 l~i 345 (398)
+.|
T Consensus 338 i~i 340 (379)
T 4h09_A 338 ISY 340 (379)
T ss_dssp CCC
T ss_pred EEE
Confidence 776
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.95 E-value=0.36 Score=44.16 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=33.0
Q ss_pred cCCCCCceEEeeccCCchHHHhhhhcCCCCCcEEeccCccccccccc----cccccceEeccc-cccc-eeccccCCCcc
Q 015886 249 SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILEC-CDKL-IQVEIETPNLS 322 (398)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~L~~L~l~~-c~~~-~~~~~~~p~L~ 322 (398)
..+.+|+.+.+... +.. .-...+..|++|+.+.+.+. .++.++. .+.+|+.+.|-. ...+ ......+.+|+
T Consensus 260 ~~~~~l~~i~l~~~-i~~-i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 260 QNCTALKTLNFYAK-VKT-VPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTCTTCCEEEECCC-CSE-ECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred ceeehhcccccccc-cee-cccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCC
Confidence 34555565555321 111 01122455666666666542 2333332 345566665532 2222 12234455555
Q ss_pred eEEE
Q 015886 323 IFKY 326 (398)
Q Consensus 323 ~l~~ 326 (398)
++.+
T Consensus 337 ~i~i 340 (379)
T 4h09_A 337 TISY 340 (379)
T ss_dssp CCCC
T ss_pred EEEE
Confidence 5544
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.87 E-value=0.35 Score=39.80 Aligned_cols=36 Identities=11% Similarity=-0.004 Sum_probs=20.1
Q ss_pred CCCceEEeeccCCchHHHhhh---hcCCCCCcEEeccCc
Q 015886 252 GNLKCLKFDFLPIEDEWLCNG---ISKLPLLEYLSMTKC 287 (398)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~c 287 (398)
..|++|+|+.+.+++.+...+ +..-..|+.|+|+++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 456666666666666443333 333345777776653
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.09 E-value=0.083 Score=43.57 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHh--CCCeEEEEEec-CCccc---cCCccccCCCCeeEEEEeccccCCC------CccccCcccceEEE
Q 015886 101 ASLAGRCLGLAIE--SEVKELVLVHW-RSERR---NLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLAL 168 (398)
Q Consensus 101 ~~~~~~~l~~~~~--~~l~~L~l~~~-~~~~~---~l~~~~~~~~~L~~L~L~~~~l~~~------~~~~~~~~L~~L~L 168 (398)
...++..+..+.. +.+++|.+... ..... .+-..+..-++|+.|+|++|.+.+. .....-..|+.|+|
T Consensus 26 ~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 26 DTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV 105 (197)
T ss_dssp -CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred CCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence 3455666666554 36777776542 22111 2222344456788888888776543 11223457788888
Q ss_pred EEEEeCHHHHHHHHh---cCccccEEEeeec
Q 015886 169 REVCADDQAIASLIS---GCPLIEYLEIRSC 196 (398)
Q Consensus 169 ~~~~~~~~~l~~l~~---~cp~Le~L~l~~~ 196 (398)
+++.+++.+...+.. .-..|++|+|.++
T Consensus 106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 888777776655543 3345666666543
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=71.33 E-value=3.1 Score=31.45 Aligned_cols=42 Identities=21% Similarity=0.030 Sum_probs=30.1
Q ss_pred cCCccccCCCCeeEEEEeccccCCC--CccccCcccceEEEEEEEe
Q 015886 130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA 173 (398)
Q Consensus 130 ~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~ 173 (398)
.+|..+ ..+|+.|+|+++.+... ..+..+++|+.|+|.+|.+
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 555433 24688999999887654 4456778888888888876
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=42.76 E-value=12 Score=27.97 Aligned_cols=33 Identities=12% Similarity=-0.034 Sum_probs=15.0
Q ss_pred CCceEEeeccCCchHHHhhhhcCCCCCcEEeccC
Q 015886 253 NLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (398)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (398)
+|+.|+|+++.+..-. ...+..+++|+.|+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 32 DTTELVLTGNNLTALP-PGLLDALPALRTAHLGA 64 (130)
T ss_dssp TCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcCCccC-hhhhhhccccCEEEecC
Confidence 4555555555443311 12233445555555554
No 171
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=26.68 E-value=46 Score=19.64 Aligned_cols=17 Identities=35% Similarity=0.386 Sum_probs=9.8
Q ss_pred ccCCCCCHHHHHHHhcc
Q 015886 10 DGISTLPEPILHHILSF 26 (398)
Q Consensus 10 D~i~~LPdeiL~~I~s~ 26 (398)
+-|+.||.||-.+|++-
T Consensus 19 eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 19 EVFKQLPADIQEEILSG 35 (48)
T ss_dssp GGTTTSCHHHHHHHTTC
T ss_pred HHHHHCcHHHHHHHHhc
Confidence 34566666666666553
Done!