Query 015887
Match_columns 398
No_of_seqs 132 out of 276
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 01:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 9.4E-98 2E-102 717.6 21.9 377 1-398 2-393 (408)
2 PF03547 Mem_trans: Membrane t 100.0 3.8E-48 8.3E-53 390.4 28.5 358 9-397 1-377 (385)
3 COG0679 Predicted permeases [G 100.0 6E-27 1.3E-31 230.6 20.8 277 7-389 2-278 (311)
4 TIGR00946 2a69 he Auxin Efflux 99.9 1.4E-23 3.1E-28 207.3 21.7 288 6-389 2-291 (321)
5 PRK09903 putative transporter 99.9 3.9E-21 8.4E-26 189.6 22.9 274 12-389 7-281 (314)
6 TIGR00841 bass bile acid trans 94.6 0.79 1.7E-05 44.8 13.6 134 10-162 137-274 (286)
7 TIGR00841 bass bile acid trans 92.4 0.18 3.8E-06 49.4 4.7 78 306-389 13-91 (286)
8 TIGR00832 acr3 arsenical-resis 83.3 3.2 7E-05 41.4 6.8 100 16-116 183-289 (328)
9 COG0385 Predicted Na+-dependen 81.2 8 0.00017 38.5 8.5 44 74-117 224-267 (319)
10 COG0385 Predicted Na+-dependen 73.5 5.4 0.00012 39.7 4.8 80 304-389 41-121 (319)
11 PRK11339 abgT putative aminobe 70.2 14 0.00031 39.0 7.4 80 13-94 89-174 (508)
12 TIGR00832 acr3 arsenical-resis 64.8 17 0.00038 36.2 6.5 108 266-389 13-127 (328)
13 TIGR03802 Asp_Ala_antiprt aspa 63.9 48 0.001 35.7 10.0 156 10-173 8-189 (562)
14 PRK12460 2-keto-3-deoxyglucona 56.9 36 0.00078 33.8 6.9 103 13-124 165-268 (312)
15 PF01758 SBF: Sodium Bile acid 55.8 10 0.00023 34.3 2.9 75 309-388 6-81 (187)
16 PF13593 DUF4137: SBF-like CPA 55.4 26 0.00057 34.7 5.9 112 266-389 4-117 (313)
17 PF03812 KdgT: 2-keto-3-deoxyg 54.8 53 0.0012 32.6 7.7 108 11-126 168-276 (314)
18 TIGR00783 ccs citrate carrier 54.2 40 0.00087 34.0 6.9 81 18-101 208-294 (347)
19 PF05684 DUF819: Protein of un 54.2 38 0.00083 34.5 6.9 78 17-97 28-109 (378)
20 PRK03818 putative transporter; 52.8 1.2E+02 0.0026 32.6 10.8 134 32-174 50-188 (552)
21 PF05684 DUF819: Protein of un 52.6 77 0.0017 32.4 8.8 132 14-164 240-372 (378)
22 PF03806 ABG_transport: AbgT p 50.6 1.2E+02 0.0027 32.1 10.1 80 13-94 79-164 (502)
23 TIGR00819 ydaH p-Aminobenzoyl- 45.9 2E+02 0.0043 30.7 10.8 104 15-129 87-196 (513)
24 PF13593 DUF4137: SBF-like CPA 44.3 1.1E+02 0.0023 30.3 8.2 104 13-123 163-273 (313)
25 PRK11677 hypothetical protein; 42.4 28 0.00062 30.2 3.3 25 73-100 3-27 (134)
26 COG2855 Predicted membrane pro 41.5 43 0.00092 33.6 4.8 98 59-171 78-181 (334)
27 PRK04972 putative transporter; 39.4 2.1E+02 0.0045 30.8 10.0 104 11-119 11-135 (558)
28 PRK05274 2-keto-3-deoxyglucona 38.9 48 0.001 33.2 4.8 100 15-122 174-274 (326)
29 PF11120 DUF2636: Protein of u 37.3 54 0.0012 24.6 3.6 28 65-98 2-29 (62)
30 TIGR00793 kdgT 2-keto-3-deoxyg 36.6 1.2E+02 0.0025 30.2 6.8 106 11-124 168-274 (314)
31 PRK05326 potassium/proton anti 36.6 2.4E+02 0.0052 30.2 10.0 97 22-124 252-350 (562)
32 PF06305 DUF1049: Protein of u 36.1 53 0.0011 24.3 3.6 26 73-98 18-43 (68)
33 PF09964 DUF2198: Uncharacteri 35.0 98 0.0021 24.1 4.8 17 82-98 52-68 (74)
34 COG3763 Uncharacterized protei 34.4 68 0.0015 24.7 3.8 25 71-95 2-26 (71)
35 TIGR00698 conserved hypothetic 34.1 1E+02 0.0022 31.0 6.2 96 59-169 74-176 (335)
36 COG0475 KefB Kef-type K+ trans 33.9 1.4E+02 0.0029 30.7 7.3 65 37-102 264-329 (397)
37 PF06295 DUF1043: Protein of u 32.0 46 0.00099 28.5 3.0 22 79-100 2-23 (128)
38 TIGR03082 Gneg_AbrB_dup membra 31.8 1.4E+02 0.0029 26.3 6.1 47 55-101 55-105 (156)
39 PF03601 Cons_hypoth698: Conse 31.3 60 0.0013 32.1 4.1 98 59-171 68-172 (305)
40 PF02083 Urotensin_II: Urotens 30.8 17 0.00037 18.3 0.0 6 391-396 7-12 (12)
41 PF10804 DUF2538: Protein of u 29.5 32 0.0007 29.8 1.5 18 379-396 132-149 (156)
42 PRK01844 hypothetical protein; 29.2 92 0.002 24.1 3.8 25 72-96 3-27 (72)
43 COG2323 Predicted membrane pro 28.0 1.7E+02 0.0036 27.7 6.2 79 14-99 8-86 (224)
44 PF09512 ThiW: Thiamine-precur 27.3 1E+02 0.0023 27.3 4.4 71 23-98 74-148 (150)
45 COG1346 LrgB Putative effector 27.1 1.5E+02 0.0032 28.2 5.6 76 43-123 60-136 (230)
46 PF05552 TM_helix: Conserved T 26.2 90 0.002 22.2 3.2 33 66-98 8-40 (53)
47 COG3493 CitS Na+/citrate sympo 26.2 4.8E+02 0.01 26.9 9.3 94 31-127 91-195 (438)
48 COG3180 AbrB Putative ammonia 26.0 1.3E+02 0.0029 30.4 5.4 46 55-100 66-115 (352)
49 TIGR00210 gltS sodium--glutama 25.9 3.5E+02 0.0076 27.8 8.7 90 35-130 270-363 (398)
50 PF06376 DUF1070: Protein of u 24.4 78 0.0017 20.9 2.3 19 140-158 12-30 (34)
51 PF05145 AmoA: Putative ammoni 23.7 1.9E+02 0.004 28.7 6.0 47 55-101 33-83 (318)
52 PF07219 HemY_N: HemY protein 23.7 64 0.0014 26.5 2.3 35 71-105 15-49 (108)
53 PF12534 DUF3733: Leucine-rich 22.5 1.2E+02 0.0025 23.1 3.2 43 61-103 12-59 (65)
54 KOG2718 Na+-bile acid cotransp 22.2 1.3E+02 0.0027 30.8 4.5 74 43-116 107-187 (371)
55 PF00375 SDF: Sodium:dicarboxy 22.0 2.8E+02 0.0061 28.1 7.1 81 15-100 3-96 (390)
56 COG4129 Predicted membrane pro 21.4 4.7E+02 0.01 26.3 8.3 93 7-101 50-151 (332)
57 KOG2262 Sexual differentiation 21.0 17 0.00038 39.4 -1.9 96 66-171 438-535 (761)
58 PF03390 2HCT: 2-hydroxycarbox 21.0 3.7E+02 0.0081 27.9 7.6 109 13-126 52-177 (414)
59 PF03616 Glt_symporter: Sodium 20.6 8.9E+02 0.019 24.5 10.9 115 9-130 218-365 (368)
60 PRK03562 glutathione-regulated 20.3 3.5E+02 0.0076 29.5 7.8 54 49-103 271-325 (621)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=9.4e-98 Score=717.58 Aligned_cols=377 Identities=49% Similarity=0.907 Sum_probs=315.2
Q ss_pred CchhHHHHHHH--HHHHHHHHHHHHHHHHHhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHH
Q 015887 1 MGFWTFFEVAS--MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN 78 (398)
Q Consensus 1 m~~~~li~~a~--~pv~kVlli~~~G~~lA~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv~ 78 (398)
||+++++..|. +|++||++|+.+||++|+++.|+|++|+||.+|++||++|+|||+|+|+|+++|.|++.+|||||+|
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 89999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeeEEEeecCCcchhHHHHHHHHhhhCCCCCCCchhhhhhhhHHHHHHHHhhHH
Q 015887 79 VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGF 158 (398)
Q Consensus 79 ~~l~~~ig~~lg~l~~~~~~~p~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rG~aYi~~~~~~g~i 158 (398)
+++++++|.++||++.|++|+|+++|+++++||+|||+||||+++++|+|+++++|||++|.|.+||++|++++|++|++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhhhccchhhH-HhhhhcCCCCCCCcccCcccccchhhhccCCCCCCcccchhhccCCCCCCCCccccccCccc
Q 015887 159 FIWSYSYQLIKQSSVRY-KALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQAS 237 (398)
Q Consensus 159 ~~ws~g~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (398)
++|||+||++.++..+. ...+++ +.+... +....++ .+.+.|++.++..+ +..+|++++
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~-~Ve~~~------~~~~~~s--~e~~~~~~~k~~ll----~~~en~~~~------- 221 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKES-PVEALL------ESVPQPS--VESDEDSTCKTLLL----ASKENRNNQ------- 221 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChh-hhhhhh------hccCCCC--cccccccccccccc----cccccCCCc-------
Confidence 99999999777664321 111111 000000 0000000 00000000110000 001111110
Q ss_pred ccccchhhhhHhhH-HHHHHHHHhhhChhHHHHHHHHHHhchhhhHHhhcCCCCchhhHHHHHHHhcCccchhhhhhhcc
Q 015887 238 HLQTRKESFWKRSL-EFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGG 316 (398)
Q Consensus 238 ~~~~~~~~~~~~~~-~~~~~~l~~~~~Pp~ia~ilg~ivg~iPpLk~lf~~~~~pL~~i~~s~~~lG~a~VPl~llvLGa 316 (398)
...++....+|.+ ...+..++++++||++|+++|+++|.|||||+++|++++|+++++|+++.+|+++|||++++|||
T Consensus 222 -~~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGg 300 (408)
T KOG2722|consen 222 -VVGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGG 300 (408)
T ss_pred -eeeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhcc
Confidence 0101111111111 11123389999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCcchhhhHHHHHHHHhHHHHHHHHHHHHcCCCC-CChhHHHHHHhccCCchHHHHHHHHHHH------
Q 015887 317 NLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP-SDPLYHYVLMVQFTLPPAMNIGKYINNN------ 389 (398)
Q Consensus 317 ~L~~g~~~s~~~~~~iv~i~~~RliilP~igi~iv~~~~~~g~~~-~Dpv~~fV~~l~~~~PpA~~l~~i~q~~------ 389 (398)
||++|+++|.++.+++++++++||+++|+.|++++..++|+|.++ |||+|+||++||+++|||||++||||+|
T Consensus 301 nL~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~E 380 (408)
T KOG2722|consen 301 NLIQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERE 380 (408)
T ss_pred ccccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHH
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ----HHHHHhhcC
Q 015887 390 ----IHWRYLVLI 398 (398)
Q Consensus 390 ----lFw~Y~~~~ 398 (398)
+||+|.+++
T Consensus 381 cs~il~W~y~va~ 393 (408)
T KOG2722|consen 381 CSVILFWTYAVAS 393 (408)
T ss_pred HHHHHHHHHHHHH
Confidence 999999874
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=3.8e-48 Score=390.35 Aligned_cols=358 Identities=28% Similarity=0.455 Sum_probs=271.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 015887 9 VASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGI 88 (398)
Q Consensus 9 ~a~~pv~kVlli~~~G~~lA~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv~~~l~~~ig~~ 88 (398)
+++++++++++++++||+++ |+|+++++.+|.+|++++++|+|||+|++++++.+.+++.++|+++++.++.++++++
T Consensus 1 ~v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (385)
T PF03547_consen 1 TVFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLL 78 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 36889999999999999998 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCeeEEEeecCCcchhHHHHHHHHhhhCCCCCCCchhhhhhhhHHHHHHHHhhHHhhhhhchhhh
Q 015887 89 LGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI 168 (398)
Q Consensus 89 lg~l~~~~~~~p~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rG~aYi~~~~~~g~i~~ws~g~~ll 168 (398)
++|++.|++|.|+++++.+..+|+|+|++++|+.++++++.+ +|.+|++++..++.++.|++|+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-------------~~~~~~~~~~~~~~i~~~~~~~~l~ 145 (385)
T PF03547_consen 79 LGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-------------RGVAYAIIFDVVNNIILWSLGYFLL 145 (385)
T ss_pred HHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-------------hhhhhehHHHHhhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999753 8889999999999999999999988
Q ss_pred ccchhhHHhhhhcCCCCC--CCcccCcccccchhhhccCCCCCCc-ccchhhc-cCCCCCCCCccccccCcccccccch-
Q 015887 169 KQSSVRYKALAQAAEPEE--VPKEVNKDFDANAQTQLLRGTTDDQ-EDVSVLV-ASTKSSSDPECQIIVPQASHLQTRK- 243 (398)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 243 (398)
+.++++.++.++++++.. .++..++++...+++. ....+++ ++..... .+.+. +.+.+...+ ..+..+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~ 220 (385)
T PF03547_consen 146 ESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSS--PSSTEEEIDEDGSPSSTPSQS--SASAPSSVS-TSPSPSNST 220 (385)
T ss_pred cccccccccccccccccccccccccCCccccCCccc--ccccccccccCCccccccccc--ccccchhhc-cCCcccccc
Confidence 876543322111100000 0000000000000000 0000000 0000000 00000 000000000 00011111
Q ss_pred ---hhhhHhhHHH-HHHHHHhhhChhHHHHHHHHHHhchhhhHHhhcCCCCchhhHHHHHHHhcCccchhhhhhhccccc
Q 015887 244 ---ESFWKRSLEF-LHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLI 319 (398)
Q Consensus 244 ---~~~~~~~~~~-~~~~l~~~~~Pp~ia~ilg~ivg~iPpLk~lf~~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~ 319 (398)
.+.+++.++. .+...+.++|||++|+++|++++++|+++.++++ .+++++++++|++++|++++++|++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~ 295 (385)
T PF03547_consen 221 GAEQKSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLA 295 (385)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1111222222 2333789999999999999999999999999988 799999999999999999999999999
Q ss_pred cccccCCCCCcchhhhHHHHHHHHhHHHHHHHHHHHHcCCCCCChhHHHHHHhccCCchHHHHHHHHHHH----------
Q 015887 320 QGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGKYINNN---------- 389 (398)
Q Consensus 320 ~g~~~s~~~~~~iv~i~~~RliilP~igi~iv~~~~~~g~~~~Dpv~~fV~~l~~~~PpA~~l~~i~q~~---------- 389 (398)
++++....+.+.....++.|++++|++++++++.+. -|+....+++++.++|||++...+|+.|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~------l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~ 369 (385)
T PF03547_consen 296 RGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFLLG------LDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSI 369 (385)
T ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHH
Confidence 988777788888888899999999999999998764 2666788999999999999999999998
Q ss_pred HHHHHhhc
Q 015887 390 IHWRYLVL 397 (398)
Q Consensus 390 lFw~Y~~~ 397 (398)
+||+|+++
T Consensus 370 ~~~~~~~~ 377 (385)
T PF03547_consen 370 VFWSTLLS 377 (385)
T ss_pred HHHHHHHH
Confidence 99999986
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.95 E-value=6e-27 Score=230.61 Aligned_cols=277 Identities=23% Similarity=0.344 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 015887 7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIG 86 (398)
Q Consensus 7 i~~a~~pv~kVlli~~~G~~lA~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv~~~l~~~ig 86 (398)
++..+.++++++++.+.||+++ |.|+++++..|.+|++++++++|||+|++++++-..++ .++..+++..+.+...+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHH
Confidence 4677899999999999999998 99999999999999999999999999999999987666 78888888777777888
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEEeecCCcchhHHHHHHHHhhhCCCCCCCchhhhhhhhHHHHHHHHhhHHhhhhhchh
Q 015887 87 GILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQ 166 (398)
Q Consensus 87 ~~lg~l~~~~~~~p~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rG~aYi~~~~~~g~i~~ws~g~~ 166 (398)
.+..++..|.++.+++++.....+++|+|++++++.+..++ | .++|++|.++++++++++.|++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~------G~~gl~~~~i~~~~~~~~~~~~g~~ 145 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------F------GEKGLAYAVIFLIIGLFLMFTLGVI 145 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------c------CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999998766665 2 4578899999999999999999997
Q ss_pred hhccchhhHHhhhhcCCCCCCCcccCcccccchhhhccCCCCCCcccchhhccCCCCCCCCccccccCcccccccchhhh
Q 015887 167 LIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESF 246 (398)
Q Consensus 167 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (398)
.+...+++. + +..
T Consensus 146 ~l~~~~~~~-----------------------------------------------------------------~--~~~ 158 (311)
T COG0679 146 LLARSGGGT-----------------------------------------------------------------N--KSL 158 (311)
T ss_pred HHHHhcCCc-----------------------------------------------------------------h--hHH
Confidence 664321100 0 000
Q ss_pred hHhhHHHHHHHHHhhhChhHHHHHHHHHHhchhhhHHhhcCCCCchhhHHHHHHHhcCccchhhhhhhccccccccccCC
Q 015887 247 WKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSST 326 (398)
Q Consensus 247 ~~~~~~~~~~~l~~~~~Pp~ia~ilg~ivg~iPpLk~lf~~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g~~~s~ 326 (398)
+ +...+-+.||+.+|.++|++..... +.- | .++.++++++|++++|+.++++|+.|+. .+.++
T Consensus 159 ~-------~~~~~~~~nP~i~a~i~g~~~~~~~------i~l--P-~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~~~~ 221 (311)
T COG0679 159 L-------SVLKKLLTNPLIIALILGLLLNLLG------ISL--P-APLDTAVDLLASAASPLALIALGLSLAF-LKLKG 221 (311)
T ss_pred H-------HHHHHHHhCcHHHHHHHHHHHHHcC------CCC--c-HHHHHHHHHHHHhhhhHHHHHHhhhcch-hhhcc
Confidence 0 1113567899999999999988655 221 1 2889999999999999999999999988 55666
Q ss_pred CCCcchhhhHHHHHHHHhHHHHHHHHHHHHcCCCCCChhHHHHHHhccCCchHHHHHHHHHHH
Q 015887 327 LKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGKYINNN 389 (398)
Q Consensus 327 ~~~~~iv~i~~~RliilP~igi~iv~~~~~~g~~~~Dpv~~fV~~l~~~~PpA~~l~~i~q~~ 389 (398)
...+.+......|+++.|++...+.+.. | + ++...-|+.++.++|+|.|-..+++-+
T Consensus 222 ~~~~~~~~~~~~kll~~Pl~~~~~~~~~---~-l--~~~~~~v~vl~~a~P~A~~~~v~a~~~ 278 (311)
T COG0679 222 SKPPIILIALSLKLLLAPLVALLVAKLL---G-L--SGLALQVLVLLSAMPTAVNAYVLARQY 278 (311)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHc---C-C--ChHHHHHHHHHhhCcHHhHHHHHHHHh
Confidence 7778888888889999999999965544 3 2 444448999999999999999999876
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.92 E-value=1.4e-23 Score=207.34 Aligned_cols=288 Identities=19% Similarity=0.178 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHH
Q 015887 6 FFEVASMPIVQVLLISVLGALM-ATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFL 84 (398)
Q Consensus 6 li~~a~~pv~kVlli~~~G~~l-A~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv~~~l~~~ 84 (398)
++|..+..++.++++.++||++ . |+|+++++..|.+|++++++.+|||+|+++++.-..++....+...+.....+.
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999 6 889999999999999999999999999999985333344455555555566677
Q ss_pred HHHHHHHHHHH-HhcCCCCCCCeeEEEeecCCcchhHHHHHHHHhhhCCCCCCCchhhhhhhhHHHHHHHHhhHHhhhhh
Q 015887 85 IGGILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSY 163 (398)
Q Consensus 85 ig~~lg~l~~~-~~~~p~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rG~aYi~~~~~~g~i~~ws~ 163 (398)
+.++++|++.| .+|.+++.++....++.++|++.+-+-+++++- |++. . .+..|...+.....+..|++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~-------G~~~--~-~~~~~~~~~~~~~~~~~~~~ 149 (321)
T TIGR00946 80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLF-------GEEG--A-KILIAALFIDTGAVLMTIAL 149 (321)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHh-------cccc--h-hhhHHHHHHHhccchhHHHH
Confidence 88899999998 889999999999999999999999999999994 3221 1 13566666666667788999
Q ss_pred chhhhccchhhHHhhhhcCCCCCCCcccCcccccchhhhccCCCCCCcccchhhccCCCCCCCCccccccCcccccccch
Q 015887 164 SYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRK 243 (398)
Q Consensus 164 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (398)
|+.+.....+ ++ + + + .
T Consensus 150 ~~~~~~~~~~------~~------------------~-------------------------------------~--~-~ 165 (321)
T TIGR00946 150 GLFLVSEDGA------GG------------------E-------------------------------------G--S-G 165 (321)
T ss_pred HHHHhccccc------cc------------------c-------------------------------------c--c-c
Confidence 8754321100 00 0 0 0 0
Q ss_pred hhhhHhhHHHHHHHHHhhhChhHHHHHHHHHHhchhhhHHhhcCCCCchhhHHHHHHHhcCccchhhhhhhccccccccc
Q 015887 244 ESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLR 323 (398)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~Pp~ia~ilg~ivg~iPpLk~lf~~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g~~ 323 (398)
++.+++.++.+ .+-+.||+.+|.++|+++..... . -| .++.++++++|++++|+.++++|..+.. +
T Consensus 166 ~~~~~~~~~~~---~~~~~nP~iia~i~Gl~~~~~~i------~--lP-~~l~~~l~~lg~~~~plaLl~lG~~l~~--~ 231 (321)
T TIGR00946 166 ESTRLMLIFVW---KKLIKFPPLWAPLLSVILSLVGF------K--MP-GLILKSISILSGATTPMALFSLGLALSP--R 231 (321)
T ss_pred hhHHHHHHHHH---HHHHhCCChHHHHHHHHHHHHhh------c--Cc-HHHHHHHHHHHHHHHHHHHHHHHHhhCh--h
Confidence 00111122111 23457899999999999998762 1 11 4889999999999999999999999864 2
Q ss_pred cCCCCCcchhhhHHHHHHHHhHHHHHHHHHHHHcCCCCCChhHHHHHHhccCCchHHHHHHHHHHH
Q 015887 324 SSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGKYINNN 389 (398)
Q Consensus 324 ~s~~~~~~iv~i~~~RliilP~igi~iv~~~~~~g~~~~Dpv~~fV~~l~~~~PpA~~l~~i~q~~ 389 (398)
+.+.+++.+...++.|+++.|++...+.... +-|+..+-+++++.++|||.+...+++-+
T Consensus 232 ~~~~~~~~~~~~~~~klil~P~i~~~~~~~~------~l~~~~~~~~vl~aa~P~a~~~~i~A~~y 291 (321)
T TIGR00946 232 KIKLGVRDAILALIVRFLVQPAVMAGISKLI------GLRGLELSVAILQAALPGGAVAAVLATEY 291 (321)
T ss_pred hhccChHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 2333456778888999999999997765432 33788899999999999999999999987
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.88 E-value=3.9e-21 Score=189.57 Aligned_cols=274 Identities=17% Similarity=0.204 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015887 12 MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGW 91 (398)
Q Consensus 12 ~pv~kVlli~~~G~~lA~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv~~~l~~~ig~~lg~ 91 (398)
..++-++++.++||++. |+|+++++..|.+|++++++.+||++|+++.+. +.+++.+-|.+.+..++.+...++++|
T Consensus 7 ~~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (314)
T PRK09903 7 GDLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFSW 83 (314)
T ss_pred HHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34666779999999998 999999999999999999999999999999875 666665345456777788888888888
Q ss_pred HHHH-HhcCCCCCCCeeEEEeecCCcchhHHHHHHHHhhhCCCCCCCchhhhhhhhHHHHHHHHhhHHhhhhhchhhhcc
Q 015887 92 IVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQ 170 (398)
Q Consensus 92 l~~~-~~~~p~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rG~aYi~~~~~~g~i~~ws~g~~ll~~ 170 (398)
++.+ .+|.+++.++....+++++|++.+-+-+++++ ||++. . -|+.|..++ .+.+++.|++|..+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~--~-~~~~~a~~~-~~~~~~~~~~g~~~~~~ 152 (314)
T PRK09903 84 FGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSV--S-TGLVVAIIS-IIVNAITIPIGLYLLNP 152 (314)
T ss_pred HHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchh--h-hhhHHHHHH-HHHHHHHHHHHHHHHcc
Confidence 8875 66777777777888889999999999999998 44321 1 145555544 35788999999776643
Q ss_pred chhhHHhhhhcCCCCCCCcccCcccccchhhhccCCCCCCcccchhhccCCCCCCCCccccccCcccccccchhhhhHhh
Q 015887 171 SSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRS 250 (398)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (398)
.+.+ ++ + +...++.+
T Consensus 153 ~~~~-----~~-----------------------------------------------------------~-~~~~~~~l 167 (314)
T PRK09903 153 SSGA-----DG-----------------------------------------------------------K-KNSNLSAL 167 (314)
T ss_pred cccc-----cc-----------------------------------------------------------c-cchHHHHH
Confidence 2100 00 0 00011111
Q ss_pred HHHHHHHHHhhhChhHHHHHHHHHHhchhhhHHhhcCCCCchhhHHHHHHHhcCccchhhhhhhccccccccccCCCCCc
Q 015887 251 LEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPL 330 (398)
Q Consensus 251 ~~~~~~~l~~~~~Pp~ia~ilg~ivg~iPpLk~lf~~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~ 330 (398)
.+-+-||+.+|.++|+++.+. +-.-| .++.++++++|++++|+.++.+|++|++...+ .. +
T Consensus 168 -------~~~~~nP~iia~~~gl~~~l~--------~i~lP-~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~--~~-~ 228 (314)
T PRK09903 168 -------ISAAKEPVVWAPVLATILVLV--------GVKIP-AAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE--FS-A 228 (314)
T ss_pred -------HHHHhchHHHHHHHHHHHHHc--------CCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cc-H
Confidence 234678999999999997542 21112 48999999999999999999999999874221 22 3
Q ss_pred chhhhHHHHHHHHhHHHHHHHHHHHHcCCCCCChhHHHHHHhccCCchHHHHHHHHHHH
Q 015887 331 IIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGKYINNN 389 (398)
Q Consensus 331 ~iv~i~~~RliilP~igi~iv~~~~~~g~~~~Dpv~~fV~~l~~~~PpA~~l~~i~q~~ 389 (398)
......+.|+++.|++...+... .|+ |+...=+++++.++|+|.+-..+++-+
T Consensus 229 ~~~~~~~~Kli~~P~i~~~~~~~---~~l---~~~~~~v~vl~aa~P~a~~~~i~A~~y 281 (314)
T PRK09903 229 EIAYNTFLKLILMPLALLLVGMA---CHL---NSEHLQMMVLAGALPPAFSGIIIASRF 281 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---cCC---CcHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34566778999999988655433 233 677778999999999999999999876
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=94.64 E-value=0.79 Score=44.79 Aligned_cols=134 Identities=14% Similarity=0.085 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHhh---hhchhhhhhhhHHHHHhhhcccchhhH-HHHHHHHHHHHHHHHH
Q 015887 10 ASMPIVQVLLISVLGALMATQYWNLLTADARRS---LNKMVFTVFTPSLMFASLAKTVTLEEI-ISWWFMPVNVAMTFLI 85 (398)
Q Consensus 10 a~~pv~kVlli~~~G~~lA~~~~~il~~~~~k~---ls~l~~~~FlP~LiFskla~~lt~~~i-~~~w~ipv~~~l~~~i 85 (398)
..+ ..-+++-...|..+.+ . . ++.+|. ++.+... ++=++++.-++.+. +++ .+.|.+-+..++...+
T Consensus 137 ~~~-~~~v~vPl~lG~~~r~--~--~-p~~~~~~~~~~~~s~~-~l~liv~~~~~~~~--~~i~~~~~~~~~~~~ll~~~ 207 (286)
T TIGR00841 137 GLS-LVAVLIPVSIGMLVKH--K--L-PQIAKIILKVGLISVF-LLSVIIAVVGGINV--ENLATIGPLLLLVGILLPLA 207 (286)
T ss_pred HHH-HHHHHHHHHHHHHHHH--H--h-HHHHHHHHhCchHHHH-HHHHHHHHHHHhhH--HHHHHhhHHHHHHHHHHHHH
Confidence 444 6778888999998852 1 1 223332 3333222 22244444444333 222 2234444457778899
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEEeecCCcchhHHHHHHHHhhhCCCCCCCchhhhhhhhHHHHHHHHhhHHhhhh
Q 015887 86 GGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWS 162 (398)
Q Consensus 86 g~~lg~l~~~~~~~p~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rG~aYi~~~~~~g~i~~ws 162 (398)
|+.+||+..|.+|.+++.++-+.-.++..|++ +-+++..+. |+ ++ ...-...|...+...+.++.+-
T Consensus 208 ~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~-~~-~a~~~~~~~v~~~~~~~~~a~~ 274 (286)
T TIGR00841 208 GFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FS-PE-VAVPSAIFPLIYALFQLAFALL 274 (286)
T ss_pred HHHHHHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cC-hH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888999988 555433332 33 11 2333445666666666665543
No 7
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=92.40 E-value=0.18 Score=49.35 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=61.3
Q ss_pred cchhhhhhhccccccc-cccCCCCCcchhhhHHHHHHHHhHHHHHHHHHHHHcCCCCCChhHHHHHHhccCCchHHHHHH
Q 015887 306 TIPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGK 384 (398)
Q Consensus 306 ~VPl~llvLGa~L~~g-~~~s~~~~~~iv~i~~~RliilP~igi~iv~~~~~~g~~~~Dpv~~fV~~l~~~~PpA~~l~~ 384 (398)
.+..+++.+|.++... .++...+++.+...++.|++++|+++..+.+.. +.||.+...+++..++|+|.+...
T Consensus 13 ~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~------~l~~~~~~glvL~~~~P~~~~s~v 86 (286)
T TIGR00841 13 LLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVF------KLPPELAVGVLIVGCCPGGTASNV 86 (286)
T ss_pred HHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHheeeCCCchHHHH
Confidence 3677888999999742 222223556777888899999999997776533 468999999999999999999888
Q ss_pred HHHHH
Q 015887 385 YINNN 389 (398)
Q Consensus 385 i~q~~ 389 (398)
+|+.+
T Consensus 87 ~t~~~ 91 (286)
T TIGR00841 87 FTYLL 91 (286)
T ss_pred HHHHh
Confidence 88876
No 8
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=83.29 E-value=3.2 Score=41.42 Aligned_cols=100 Identities=13% Similarity=0.032 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhhcc-----CCCCHHHHhhhhchhhhhhhhHHHHHhhhcccc--hhhHHHHHHHHHHHHHHHHHHHH
Q 015887 16 QVLLISVLGALMATQYW-----NLLTADARRSLNKMVFTVFTPSLMFASLAKTVT--LEEIISWWFMPVNVAMTFLIGGI 88 (398)
Q Consensus 16 kVlli~~~G~~lA~~~~-----~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt--~~~i~~~w~ipv~~~l~~~ig~~ 88 (398)
-+++-...|..+.+... +...++.++.++.+.. +++=..+|...+.+-. .++..+++.+-...++.+.+++.
T Consensus 183 ~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~ 261 (328)
T TIGR00832 183 YLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFF 261 (328)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 34455666766642111 1111233344554443 3333444444444431 12222333333346688899999
Q ss_pred HHHHHHHHhcCCCCCCCeeEEEeecCCc
Q 015887 89 LGWIVVKLLRPKPHLEGLVIATCASGNL 116 (398)
Q Consensus 89 lg~l~~~~~~~p~~~~~~vi~~~~fgN~ 116 (398)
+||.+.|.+|.++++|.-+.-+++-.|+
T Consensus 262 lg~~~~r~~~l~~~~~~a~~~e~g~qN~ 289 (328)
T TIGR00832 262 LTFALAKKLGLPYSITAPAAFTGASNNF 289 (328)
T ss_pred HHHHHHHHhCcChhhhhhheehhhhhhH
Confidence 9999999999999999999988888875
No 9
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=81.22 E-value=8 Score=38.46 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeeEEEeecCCcc
Q 015887 74 FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLG 117 (398)
Q Consensus 74 ~ipv~~~l~~~ig~~lg~l~~~~~~~p~~~~~~vi~~~~fgN~~ 117 (398)
.+-+..+++..+|+.+||...|.++.++..|.-+.-|++-.|++
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~ 267 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLG 267 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHH
Confidence 45666788889999999999999999999999999999999985
No 10
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=73.52 E-value=5.4 Score=39.68 Aligned_cols=80 Identities=11% Similarity=0.175 Sum_probs=63.1
Q ss_pred Cccchhhhhhhccccccc-cccCCCCCcchhhhHHHHHHHHhHHHHHHHHHHHHcCCCCCChhHHHHHHhccCCchHHHH
Q 015887 304 DGTIPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNI 382 (398)
Q Consensus 304 ~a~VPl~llvLGa~L~~g-~~~s~~~~~~iv~i~~~RliilP~igi~iv~~~~~~g~~~~Dpv~~fV~~l~~~~PpA~~l 382 (398)
...+-++++..|.+|.+. .+..-.+|+..+..++.-++++|++++++.+... -||-..-=+++..|.|..++.
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~------l~~~l~~Gl~ll~~~Pggv~S 114 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP------LPPELAVGLLLLGCCPGGVAS 114 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC------CCHHHHHhHHheeeCCCchhH
Confidence 345667888889998752 2223356788888999999999999999977553 488888888899999999999
Q ss_pred HHHHHHH
Q 015887 383 GKYINNN 389 (398)
Q Consensus 383 ~~i~q~~ 389 (398)
-.+|++.
T Consensus 115 ~~~t~lA 121 (319)
T COG0385 115 NAMTYLA 121 (319)
T ss_pred HHHHHHh
Confidence 8888876
No 11
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=70.17 E-value=14 Score=39.02 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHH------HHH
Q 015887 13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTF------LIG 86 (398)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv~~~l~~------~ig 86 (398)
|-+.+.+++..|.-.| .|.|.++.-.+|.+.+.--...+|..+|.-+-+++-. |..-+-++|+...+.. ++|
T Consensus 89 ~pLG~vlv~mlgvgva-e~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~~as-daGyVvl~PL~a~if~a~Gr~PlaG 166 (508)
T PRK11339 89 APLGAILALVLGAGLA-ERVGLLPALMVKMASHVNARYASYMVLFIAFFSHISS-DAALVIMPPMGALIFLAVGRHPVAG 166 (508)
T ss_pred CcHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHcCCChHHH
Confidence 4567778888887777 4899999999999999999999999887776666643 3333778888777766 566
Q ss_pred HHHHHHHH
Q 015887 87 GILGWIVV 94 (398)
Q Consensus 87 ~~lg~l~~ 94 (398)
.+.++..+
T Consensus 167 ia~~fagv 174 (508)
T PRK11339 167 LLAAIAGV 174 (508)
T ss_pred HHHHHHHH
Confidence 66666543
No 12
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=64.78 E-value=17 Score=36.18 Aligned_cols=108 Identities=14% Similarity=0.042 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhchhhhHHhhcCCCCchhhHHHHHHHhcCccch------hhhhhhcccccc-ccccCCCCCcchhhhHHH
Q 015887 266 TLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIP------CITLILGGNLIQ-GLRSSTLKPLIIIAVVCV 338 (398)
Q Consensus 266 ~ia~ilg~ivg~iPpLk~lf~~~~~pL~~i~~s~~~lG~a~VP------l~llvLGa~L~~-g~~~s~~~~~~iv~i~~~ 338 (398)
..++++|+++|..-|-. ..++.. . .+.....| .+++.+|.+|.. -.++.--++|.++...+.
T Consensus 13 ~~~~i~~~~~g~~~P~~---------~~~~~~-~-~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~ 81 (328)
T TIGR00832 13 FLAIAAGVGLGVLFPSV---------FQALAA-L-EVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFI 81 (328)
T ss_pred HHHHHHHHHHHHhcccc---------HHHHHH-H-HhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHH
Confidence 56677788888754421 111111 1 12234444 356666777752 222333456788888899
Q ss_pred HHHHHhHHHHHHHHHHHHcCCCCCChhHHHHHHhccCCchHHHHHHHHHHH
Q 015887 339 RYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGKYINNN 389 (398)
Q Consensus 339 RliilP~igi~iv~~~~~~g~~~~Dpv~~fV~~l~~~~PpA~~l~~i~q~~ 389 (398)
-++++|+++.++.+.. .+.+|-+..=+++..|.|.+...-.+|.+.
T Consensus 82 qfvi~Plla~~l~~l~-----~~~~p~l~~GliLv~~~Pgg~~S~v~T~lA 127 (328)
T TIGR00832 82 NWIIGPFLMFLLAWLF-----LRDLFEYIAGLILLGLARCIAMVFVWNQLA 127 (328)
T ss_pred HHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHhcchHHHHHHHHHHc
Confidence 9999999999887643 245788999999999999998776666654
No 13
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=63.94 E-value=48 Score=35.68 Aligned_cols=156 Identities=14% Similarity=0.070 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC--CHHH--------------HhhhhchhhhhhhhHHHHHhhhcccc---hhhHH
Q 015887 10 ASMPIVQVLLISVLGALMATQYWNLL--TADA--------------RRSLNKMVFTVFTPSLMFASLAKTVT---LEEII 70 (398)
Q Consensus 10 a~~pv~kVlli~~~G~~lA~~~~~il--~~~~--------------~k~ls~l~~~~FlP~LiFskla~~lt---~~~i~ 70 (398)
.-+|++=+++++++||++. |.++= +=-+ --.++..+-++++=..+| -++-+.- +++++
T Consensus 8 ~~~p~l~lfl~i~lG~~lG--~iki~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~lFvy-~vG~~~Gp~Ff~~l~ 84 (562)
T TIGR03802 8 RSNPEIALFLSLALGYLIG--KIKFGSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFALFIF-AIGYEVGPQFFASLK 84 (562)
T ss_pred HHCHHHHHHHHHHHhHhhc--ceEEeeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH-HhhhccCHHHHHHHH
Confidence 4689999999999999997 44331 1000 001222222222222222 2222221 23444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeeEEEeecCCcchhHHHHHHHHhhhCCCCCC-----Cchhhhhh
Q 015887 71 SW-WFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFG-----NRDVCSSV 144 (398)
Q Consensus 71 ~~-w~ipv~~~l~~~ig~~lg~l~~~~~~~p~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~~~pf~-----~~~~~~~r 144 (398)
+= |..-+..++..++|.++.|...+++..|...-.++.+ ++--|+-.|=-+ .+++.+- +..-. ..+....+
T Consensus 85 ~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~a-GalT~tp~l~aA-~~a~~~~-~~~~~~~~~~~~~~avgY 161 (562)
T TIGR03802 85 KDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLAA-GGLTQSAVIGTA-GDAIEKL-GLSPEQKTAYQGNVAVAY 161 (562)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh-chhhccHHHHHH-HHHHHhc-CCCcchhhccccccceee
Confidence 32 4444556777788899999999999999666555543 355566665444 4555321 11100 11234677
Q ss_pred hhHHHHHHHHhhHHhhhh-hchhhhccchh
Q 015887 145 GLSYASFSMALGGFFIWS-YSYQLIKQSSV 173 (398)
Q Consensus 145 G~aYi~~~~~~g~i~~ws-~g~~ll~~~~~ 173 (398)
+++|.. -.+|.++.-. ..+++++.+.+
T Consensus 162 av~Ypf--Gvig~i~~~~~~~p~l~~~~~~ 189 (562)
T TIGR03802 162 AVTYIF--GTIGVIIVLVNILPWLMGIDLR 189 (562)
T ss_pred ehhhhh--HHHHHHHHHHHHHHHHhCCChH
Confidence 777753 4566664433 35667776644
No 14
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=56.93 E-value=36 Score=33.81 Aligned_cols=103 Identities=21% Similarity=0.235 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHH-HHHHHHHHHHHHHHHHH
Q 015887 13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF-MPVNVAMTFLIGGILGW 91 (398)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~-ipv~~~l~~~ig~~lg~ 91 (398)
+++-.++-..+|.++. | ++++.|+.+++=.- +..|-.+ --++.+++++++.+.++ ..+..++...+...+++
T Consensus 165 ~lv~lilpILiGmilG----N-ld~~~~~~l~~Gi~-f~I~f~~-f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~ 237 (312)
T PRK12460 165 ALVAALLPLVLGMILG----N-LDPDMRKFLTKGGP-LLIPFFA-FALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNI 237 (312)
T ss_pred HHHHHHHHHHHHHHHh----c-cchhhHHHHhccce-EeHHHHH-HHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 3456778888999885 4 77777777766533 2344333 45899999999999864 34445556678888888
Q ss_pred HHHHHhcCCCCCCCeeEEEeecCCcchhHHHHH
Q 015887 92 IVVKLLRPKPHLEGLVIATCASGNLGNLLLIIV 124 (398)
Q Consensus 92 l~~~~~~~p~~~~~~vi~~~~fgN~~~LPl~li 124 (398)
.+.|++|.+++. ....+...||.--=|-++.
T Consensus 238 ~i~rllg~~~~~--g~li~stAGnAIcgpAAVa 268 (312)
T PRK12460 238 FADRLVGGTGIA--GAAASSTAGNAVATPLAIA 268 (312)
T ss_pred HHHHHhCCChhH--HHHHHHHhhHHHHHHHHHH
Confidence 899999877554 2333334788766666543
No 15
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=55.76 E-value=10 Score=34.30 Aligned_cols=75 Identities=15% Similarity=0.258 Sum_probs=49.0
Q ss_pred hhhhhhcccccc-ccccCCCCCcchhhhHHHHHHHHhHHHHHHHHHHHHcCCCCCChhHHHHHHhccCCchHHHHHHHHH
Q 015887 309 CITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGKYIN 387 (398)
Q Consensus 309 l~llvLGa~L~~-g~~~s~~~~~~iv~i~~~RliilP~igi~iv~~~~~~g~~~~Dpv~~fV~~l~~~~PpA~~l~~i~q 387 (398)
+.++.+|.++.. -.++..-++|.++...+..++++|+++.++.+.. .++||-+..-+++..+.|.+...-..|.
T Consensus 6 ~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~-----~~~~~~~~~Gl~l~~~~P~~~~s~~~t~ 80 (187)
T PF01758_consen 6 LMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLL-----LPLSPALALGLLLVAACPGGPASNVFTY 80 (187)
T ss_dssp HHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HH-----TT--HHHHHHHHHHHHS-B-THHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 455566666642 1222223467778788899999999999997433 3578889999999999999887766666
Q ss_pred H
Q 015887 388 N 388 (398)
Q Consensus 388 ~ 388 (398)
+
T Consensus 81 l 81 (187)
T PF01758_consen 81 L 81 (187)
T ss_dssp H
T ss_pred H
Confidence 5
No 16
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=55.37 E-value=26 Score=34.68 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhchhhhHHhhcCCCCchhhHHHHHHHhcCccchhhhhhhcccccc-ccccCCCCCcchhhhHHHHHHHHh
Q 015887 266 TLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIALP 344 (398)
Q Consensus 266 ~ia~ilg~ivg~iPpLk~lf~~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~-g~~~s~~~~~~iv~i~~~RliilP 344 (398)
.++.++++..|..=|-. +....++.. ++.....|.++.++-|.+|.. ..++.-.++|..+.+...=+++.|
T Consensus 4 l~~l~~ai~la~~~P~~------g~~~~~~~~--~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 4 LLGLLLAILLAYLFPAP------GAAGGVIKP--EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred HHHHHHHHHHHHHcCcc------cccCCccch--hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 56666677666544432 111222220 123333488899999988864 222233567888888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCChhHHHHHHhccCCchHHHHH-HHHHHH
Q 015887 345 FIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIG-KYINNN 389 (398)
Q Consensus 345 ~igi~iv~~~~~~g~~~~Dpv~~fV~~l~~~~PpA~~l~-~i~q~~ 389 (398)
+++.++...... + .|+-+..=+++..|+|+.++.+ .+|+..
T Consensus 76 ll~~~~~~l~~~--~--~~~~l~~Gl~~~~~lPtTv~S~v~~T~~A 117 (313)
T PF13593_consen 76 LLGFGLSRLFPA--F--LPPELALGLLILACLPTTVSSSVVLTRLA 117 (313)
T ss_pred HHHHHHHHHhhc--c--CCHHHHHHHHHHhhCCchhhHHHHHHHHc
Confidence 999988876642 2 3566899999999999988775 466654
No 17
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=54.75 E-value=53 Score=32.59 Aligned_cols=108 Identities=21% Similarity=0.261 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHH-HHHHHHHHHHHH
Q 015887 11 SMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPV-NVAMTFLIGGIL 89 (398)
Q Consensus 11 ~~pv~kVlli~~~G~~lA~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv-~~~l~~~ig~~l 89 (398)
.++.+-+++-..+|.++ |=+|+|.||-+++-. .+..|-+-| .++..++++++.+=..-=+ -.++++.++...
T Consensus 168 ~~~lv~~llP~iiG~iL-----GNLD~~~r~fl~~~~-~~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 168 WMSLVAALLPIIIGMIL-----GNLDPDFRKFLAPGV-PILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHH-----hcCCHHHHHHHhcCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 56788888899999988 569999999998865 566777766 5999999999998763222 234445556666
Q ss_pred HHHHHHHhcCCCCCCCeeEEEeecCCcchhHHHHHHH
Q 015887 90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPA 126 (398)
Q Consensus 90 g~l~~~~~~~p~~~~~~vi~~~~fgN~~~LPl~li~s 126 (398)
.++.-|..+-. +-....-+.+..||.-.-|-++-++
T Consensus 241 ~~~~dr~i~~~-~g~aG~A~sstAGnavatPaaiA~~ 276 (314)
T PF03812_consen 241 LYLADRLILKG-NGVAGAAISSTAGNAVATPAAIAAA 276 (314)
T ss_pred HHHHHHHHcCC-CCceeehHHhhhhhhhhhhHHHHHh
Confidence 67777765322 2223334456789999999886544
No 18
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=54.24 E-value=40 Score=34.01 Aligned_cols=81 Identities=12% Similarity=0.236 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhccCCCCHHHHhhhhchh---hhhhhhHHHHHhhh-cccchhhHHHHHHHHHH-HHHHHHHHH-HHHH
Q 015887 18 LLISVLGALMATQYWNLLTADARRSLNKMV---FTVFTPSLMFASLA-KTVTLEEIISWWFMPVN-VAMTFLIGG-ILGW 91 (398)
Q Consensus 18 lli~~~G~~lA~~~~~il~~~~~k~ls~l~---~~~FlP~LiFskla-~~lt~~~i~~~w~ipv~-~~l~~~ig~-~lg~ 91 (398)
..+...|+++. ..|+++++.....++.. ...+++.+++. ++ ...+++++.+.-=.|.. ..+...+|. +.++
T Consensus 208 v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~g-iGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~ 284 (347)
T TIGR00783 208 AFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVG-VGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGA 284 (347)
T ss_pred HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHH
Confidence 44566777776 78999998776655544 45577776663 33 44788888886411222 223334443 4456
Q ss_pred HHHHHhcCCC
Q 015887 92 IVVKLLRPKP 101 (398)
Q Consensus 92 l~~~~~~~p~ 101 (398)
++.|+++.=+
T Consensus 285 lvGKllG~YP 294 (347)
T TIGR00783 285 FLGKLMGMYP 294 (347)
T ss_pred HHHHHhCCCh
Confidence 7888888753
No 19
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=54.19 E-value=38 Score=34.55 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHH----HHHHHHHHHHHHHH
Q 015887 17 VLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN----VAMTFLIGGILGWI 92 (398)
Q Consensus 17 Vlli~~~G~~lA~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv~----~~l~~~ig~~lg~l 92 (398)
++++...|.+++ ..|++|.+....+.+.+.+.++|.-++==+ -+.+++++.+...=.+. ..+.+++|..+++.
T Consensus 28 ~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlL-l~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~ 104 (378)
T PF05684_consen 28 AVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLL-LSADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFL 104 (378)
T ss_pred HHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHH-HHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888 899996666667888888888887666543 34566666555533333 34444556666555
Q ss_pred HHHHh
Q 015887 93 VVKLL 97 (398)
Q Consensus 93 ~~~~~ 97 (398)
+.+-.
T Consensus 105 l~~~~ 109 (378)
T PF05684_consen 105 LFGGF 109 (378)
T ss_pred HHhhc
Confidence 54443
No 20
>PRK03818 putative transporter; Validated
Probab=52.79 E-value=1.2e+02 Score=32.56 Aligned_cols=134 Identities=12% Similarity=0.128 Sum_probs=70.2
Q ss_pred cCC-CCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeeEE
Q 015887 32 WNL-LTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW-WFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIA 109 (398)
Q Consensus 32 ~~i-l~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~-w~ipv~~~l~~~ig~~lg~l~~~~~~~p~~~~~~vi~ 109 (398)
.|+ +++.+...+.++-+.+|+=|. -.+-+++. .+.+++- |-..+..++.++++.+++|+..++++.+...--+++
T Consensus 50 ~~~~~~~~~~~~~~~~gl~lFv~~v-Gl~~Gp~f-~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~- 126 (552)
T PRK03818 50 FGLTLDSDMLHFIQEFGLILFVYTI-GIQVGPGF-FSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPLPVMLGIF- 126 (552)
T ss_pred cCcccChHHHHHHHHHHHHHHHHHH-hhcccHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh-
Confidence 344 555666666667676666443 12222222 2334442 444555778888899999999999999944333333
Q ss_pred EeecCCcchhHH-HH-HHHHhhhCCCC-CCCchhhhhhhhHHHHHHHHhhHHhhhhhchhhhccchhh
Q 015887 110 TCASGNLGNLLL-II-VPAICHEQGSP-FGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVR 174 (398)
Q Consensus 110 ~~~fgN~~~LPl-~l-i~sl~~~~~~p-f~~~~~~~~rG~aYi~~~~~~g~i~~ws~g~~ll~~~~~~ 174 (398)
.|=.+|=|- +- .+++ ++.+.. -..++-...++++|.. -.++.++.-.+..++++.+.++
T Consensus 127 ---aGa~T~tp~l~aa~~~~-~~~~~~~~~~~~~a~gYa~~Yp~--g~i~~il~~~~~~~~~~~~~~~ 188 (552)
T PRK03818 127 ---SGAVTNTPALGAGQQIL-RDLGTPGDLVDQMGMGYAMAYPF--GICGILLSMWLIRLIFRINVDK 188 (552)
T ss_pred ---hccccccHHHHHHHHHH-hccCCCccccCCcchhhHhHhHH--HHHHHHHHHHHHHHHhCCChHH
Confidence 333333332 22 2222 211110 0112335677777753 3455554333667777766443
No 21
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=52.64 E-value=77 Score=32.35 Aligned_cols=132 Identities=14% Similarity=0.171 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCH-HHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015887 14 IVQVLLISVLGALMATQYWNLLTA-DARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWI 92 (398)
Q Consensus 14 v~kVlli~~~G~~lA~~~~~il~~-~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv~~~l~~~ig~~lg~l 92 (398)
..-+++++..|...+ ....... .....++....++ .|.-+|..-+++++.+-..+.+..++...+-.++=++
T Consensus 240 ~~~il~~tt~~l~~~--~~~~~~~l~g~~~lg~~lly~-----ffa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~ 312 (378)
T PF05684_consen 240 TWLILTVTTLGLATS--FPPFRKLLRGASELGTFLLYL-----FFAVIGASADISELLDAPSLFLFGFIILAIHLLLMLI 312 (378)
T ss_pred HHHHHHHHHHHHHHh--ccchhhcCCchHHHHHHHHHH-----HHHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777665 3233333 4555666655555 4788999999999999545556666667777888888
Q ss_pred HHHHhcCCCCCCCeeEEEeecCCcchhHHHHHHHHhhhCCCCCCCchhhhhhhhHHHHHHHHhhHHhhhhhc
Q 015887 93 VVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYS 164 (398)
Q Consensus 93 ~~~~~~~p~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rG~aYi~~~~~~g~i~~ws~g 164 (398)
+.|++|.| ...+..++-.|++-=+.+-..+-.+. + +=..-|+.--.+.-++|+.+-+..+
T Consensus 313 ~~kl~k~~----l~~~~vAS~AnIGGpaTA~a~A~a~~-------~-~Lv~pgvL~gvlGyaiGty~G~~va 372 (378)
T PF05684_consen 313 LGKLFKID----LFELLVASNANIGGPATAPAVAAAKG-------P-SLVPPGVLMGVLGYAIGTYLGLAVA 372 (378)
T ss_pred HHHHHCCC----HHHHHHHhhcccCCcchHHHHHHhcC-------C-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 45555556667777666644444331 1 1233344444444455555444443
No 22
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=50.63 E-value=1.2e+02 Score=32.13 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHH------HHH
Q 015887 13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTF------LIG 86 (398)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv~~~l~~------~ig 86 (398)
|-+.+++++..|.=.| .|.|+++.-.||.+.+.--.+.+|+++|.-+-+++-.|- .-+-.+|+..++.. +.|
T Consensus 79 ~PLG~Vlv~mlgvgvA-E~sGll~a~~r~~~~~~p~~~vt~~v~f~Gi~sniasDA-g~Vvl~PL~a~iF~~~GRhPlaG 156 (502)
T PF03806_consen 79 PPLGLVLVMMLGVGVA-EKSGLLSALMRKLVLKAPPRLVTPAVVFVGIMSNIASDA-GYVVLPPLAAMIFAAVGRHPLAG 156 (502)
T ss_pred CcHHHHHHHHHHHHHH-HHhchHHHHHHHHhccCCcchhhHHHHHHHHHhcccccc-eeEeHHhhHHHHHHHcCCChHHH
Confidence 4566777788887777 599999999999999999999999999999999886443 33445788766665 677
Q ss_pred HHHHHHHH
Q 015887 87 GILGWIVV 94 (398)
Q Consensus 87 ~~lg~l~~ 94 (398)
...|+..+
T Consensus 157 i~~afa~v 164 (502)
T PF03806_consen 157 IAAAFAGV 164 (502)
T ss_pred HHHHHHHH
Confidence 77777654
No 23
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=45.87 E-value=2e+02 Score=30.70 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHH------HHHHH
Q 015887 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTF------LIGGI 88 (398)
Q Consensus 15 ~kVlli~~~G~~lA~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv~~~l~~------~ig~~ 88 (398)
+.++++...|+-.| .|.|.++.-.+|.+.+.--...+|..+|.-+-+++- +|..-+-++|+...+.. ++|.+
T Consensus 87 Lg~vlv~mlGvGva-e~tG~i~a~i~~~v~~~p~~~~t~ivv~~gv~s~~a-sdaG~vvl~PL~a~if~a~Gr~PlaGia 164 (513)
T TIGR00819 87 LGAILALLLGAGIA-EKSGLIPALMRKLASHSNAKLASFMVLFIAFFSHIA-SDAALVILIPLGALIFHALGRHPLAGLA 164 (513)
T ss_pred HHHHHHHHHHHHHH-HHhcHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHcCCChHHHHH
Confidence 34444555554445 489999999999999999998899887766655554 23333778899877766 56666
Q ss_pred HHHHHHHHhcCCCCCCCeeEEEeecCCcchhHHHHHHHHhh
Q 015887 89 LGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICH 129 (398)
Q Consensus 89 lg~l~~~~~~~p~~~~~~vi~~~~fgN~~~LPl~li~sl~~ 129 (398)
.++..+- ++..+.-.-+=++-+-..+.|..++
T Consensus 165 ~~fagvs---------~GFsAnl~~~~~Dpll~Git~~aA~ 196 (513)
T TIGR00819 165 AAFAGVG---------CGFSANLFIGTIDPLLAGISQEAAA 196 (513)
T ss_pred HHHHHHh---------hhhhcccccccccHHHHHHHHHHHH
Confidence 6666431 2222222223334455556666655
No 24
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=44.29 E-value=1.1e+02 Score=30.33 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCHHHHh--hhhchhhhhhhhHHHHHhhhcccchh---hH--HHHHHHHHHHHHHHHH
Q 015887 13 PIVQVLLISVLGALMATQYWNLLTADARR--SLNKMVFTVFTPSLMFASLAKTVTLE---EI--ISWWFMPVNVAMTFLI 85 (398)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~~il~~~~~k--~ls~l~~~~FlP~LiFskla~~lt~~---~i--~~~w~ipv~~~l~~~i 85 (398)
=+++|++-...|-.+- ..+.+...| ..-+..-...+-.++++....+..-+ ++ .++..+-+..+....+
T Consensus 163 L~~~vllP~~~Gq~~r----~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (313)
T PF13593_consen 163 LVLTVLLPLVLGQLLR----RWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLV 238 (313)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHH
Confidence 3456677777787663 223333222 12222234445666777776663211 11 2233333345566778
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEEeecCCcchhHHHH
Q 015887 86 GGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLII 123 (398)
Q Consensus 86 g~~lg~l~~~~~~~p~~~~~~vi~~~~fgN~~~LPl~l 123 (398)
.+.++|...|.++.++++|.-++-|++- .|+|+++
T Consensus 239 ~l~~~~~~~r~~~~~~~d~iA~~F~gs~---Ksl~~gv 273 (313)
T PF13593_consen 239 VLVLGWLAARLLGFSRPDRIAVLFCGSQ---KSLALGV 273 (313)
T ss_pred HHHHHHHHHhhcCCChhhEEEEEEEcCc---CcchhHH
Confidence 8889999999999999988777777553 3444444
No 25
>PRK11677 hypothetical protein; Provisional
Probab=42.43 E-value=28 Score=30.21 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015887 73 WFMPVNVAMTFLIGGILGWIVVKLLRPK 100 (398)
Q Consensus 73 w~ipv~~~l~~~ig~~lg~l~~~~~~~p 100 (398)
|++++ +.+++|.++|+++.|++...
T Consensus 3 W~~a~---i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYAL---IGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHH---HHHHHHHHHHHHHHhhccch
Confidence 55444 78889999999999976544
No 26
>COG2855 Predicted membrane protein [Function unknown]
Probab=41.49 E-value=43 Score=33.59 Aligned_cols=98 Identities=21% Similarity=0.244 Sum_probs=63.2
Q ss_pred hhhcccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCCeeEEEeecCCcchhHHHHHHHHhhhC----CC
Q 015887 59 SLAKTVTLEEIISWWFMPVN-VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQ----GS 133 (398)
Q Consensus 59 kla~~lt~~~i~~~w~ipv~-~~l~~~ig~~lg~l~~~~~~~p~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~----~~ 133 (398)
=++-++|++++.+++.=-+- ..++...++++++.+.|.+++|++.--.+=+.| |+|... -.
T Consensus 78 LlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld~~~a~Lia~Gs--------------sICGasAiaA~~ 143 (334)
T COG2855 78 LLGFRLTLSDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLDKKLALLIAAGS--------------SICGASAIAATA 143 (334)
T ss_pred HHcceeeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccc--------------hhhHHHHHHHhC
Confidence 36899999999999843332 455557788889999999999987755443222 344421 12
Q ss_pred C-CCCchhhhhhhhHHHHHHHHhhHHhhhhhchhhhccc
Q 015887 134 P-FGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQS 171 (398)
Q Consensus 134 p-f~~~~~~~~rG~aYi~~~~~~g~i~~ws~g~~ll~~~ 171 (398)
| .+.+|+.....++-+.++-++.. +.|.+-|.++.-+
T Consensus 144 pvika~~~eva~aIa~V~lfgtia~-llyP~l~~~l~l~ 181 (334)
T COG2855 144 PVIKAEEEEVAVAIAVVVLFGTLAM-LLYPLLYPLLGLS 181 (334)
T ss_pred CcCCCCccccceehhhHHHHHHHHH-HHHHHHHHHhCCC
Confidence 2 23344457777887777776554 5556666666544
No 27
>PRK04972 putative transporter; Provisional
Probab=39.43 E-value=2.1e+02 Score=30.81 Aligned_cols=104 Identities=11% Similarity=-0.003 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC--------------------CCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHH
Q 015887 11 SMPIVQVLLISVLGALMATQYWNL--------------------LTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEII 70 (398)
Q Consensus 11 ~~pv~kVlli~~~G~~lA~~~~~i--------------------l~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~ 70 (398)
-.|++=+++.++.|+++.+ ..+ +..+.-..+.++-+.+|+=|. -.+-+++. +++++
T Consensus 11 ~~~~~~lf~~i~lG~~lG~--i~~~~~~LG~~~g~L~vgl~~g~~~~~~~~~~~~~gl~lF~~~v-G~~~Gp~F-~~~l~ 86 (558)
T PRK04972 11 GNYILLLFVVLALGLCLGK--LRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCV-GVEAGPNF-FSIFF 86 (558)
T ss_pred cCChHHHHHHHHHHHhhhc--eEEeeEecCcchHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHH-hhhhhHHH-HHHHH
Confidence 3678888888888888873 322 011111111233333333332 11222222 23334
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeeEEEeecCCcchh
Q 015887 71 SW-WFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL 119 (398)
Q Consensus 71 ~~-w~ipv~~~l~~~ig~~lg~l~~~~~~~p~~~~~~vi~~~~fgN~~~L 119 (398)
+- |-.-+..++.++++.++++...|+++.+...-.++++ ++--|+-.|
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~a-Ga~T~tp~l 135 (558)
T PRK04972 87 RDGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGMLA-GSMTSTPVL 135 (558)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh-ccccCcHHH
Confidence 32 3344457777888999999999999999554444433 344455444
No 28
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=38.85 E-value=48 Score=33.15 Aligned_cols=100 Identities=22% Similarity=0.266 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 015887 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW-WFMPVNVAMTFLIGGILGWIV 93 (398)
Q Consensus 15 ~kVlli~~~G~~lA~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~-w~ipv~~~l~~~ig~~lg~l~ 93 (398)
+.+++...+|..+. | ++++.++..++= .++.+|+..|. ++.+++.+++.+- +..++-.+...++...+++..
T Consensus 174 i~allplliG~~lg----n-l~~~l~~~~~~G-i~~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~ 246 (326)
T PRK05274 174 VGAVLPLLVGFILG----N-LDPELRQFLGKA-VPVLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLA 246 (326)
T ss_pred hHHHHHHHHHHHHH----h-HHHhhHHHhcCC-cEEEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhH
Confidence 56668999999885 4 777766666654 44599999998 9999999999887 445554444555555667777
Q ss_pred HHHhcCCCCCCCeeEEEeecCCcchhHHH
Q 015887 94 VKLLRPKPHLEGLVIATCASGNLGNLLLI 122 (398)
Q Consensus 94 ~~~~~~p~~~~~~vi~~~~fgN~~~LPl~ 122 (398)
.|+++..+...+..+ ..+.||.--=|-+
T Consensus 247 ~Rl~~~~~g~~g~a~-~ttaG~aic~pAA 274 (326)
T PRK05274 247 DRLIGGGNGVAGAAA-GSTAGNAVATPAA 274 (326)
T ss_pred hheeecCCCcchHHH-HHHHHHHHHHHHH
Confidence 788865433332332 2356666555555
No 29
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=37.29 E-value=54 Score=24.61 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=18.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015887 65 TLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLR 98 (398)
Q Consensus 65 t~~~i~~~w~ipv~~~l~~~ig~~lg~l~~~~~~ 98 (398)
+++|+.++ ++++.++.+.+||+..+.++
T Consensus 2 ~i~DiiQi------i~l~AlI~~pLGyl~~~~~~ 29 (62)
T PF11120_consen 2 NISDIIQI------IILCALIFFPLGYLARRWLP 29 (62)
T ss_pred CHHHHHHH------HHHHHHHHHhHHHHHHHHhH
Confidence 57788887 44555566667777766544
No 30
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=36.64 E-value=1.2e+02 Score=30.22 Aligned_cols=106 Identities=19% Similarity=0.199 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHH-HHHHHHHHHHHHHHH
Q 015887 11 SMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF-MPVNVAMTFLIGGIL 89 (398)
Q Consensus 11 ~~pv~kVlli~~~G~~lA~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~-ipv~~~l~~~ig~~l 89 (398)
.++.+-+++-..+|+++ |=||+|.||-+++-. .+..|-+-| .++..++++++.+=.. -.+-.+++..++...
T Consensus 168 ~~~lv~~ilPlliG~il-----GNLD~~~r~fl~~~~-~~lIpFf~F-aLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 168 PHVFVGAVLPFLVGFAL-----GNLDPELRDFFSKAV-QTLIPFFAF-ALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHH-----hcCCHHHHHHhccCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 45677778888999988 568999999998854 556676666 4999999999977643 223345566677777
Q ss_pred HHHHHHHhcCCCCCCCeeEEEeecCCcchhHHHHH
Q 015887 90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIV 124 (398)
Q Consensus 90 g~l~~~~~~~p~~~~~~vi~~~~fgN~~~LPl~li 124 (398)
.++.-|++.-.+.. ...-+.+..||.-.-|-++-
T Consensus 241 ~~~~dr~~~g~~g~-aG~A~sstAGnAvatPaavA 274 (314)
T TIGR00793 241 LILADKFIGGGDGT-AGIAASSSAGAAVATPVLIA 274 (314)
T ss_pred HHHHHHHhcCCCCc-hhhHHHHHHHHhhhhHHHHH
Confidence 88888877521122 23334457899988887744
No 31
>PRK05326 potassium/proton antiporter; Reviewed
Probab=36.64 E-value=2.4e+02 Score=30.18 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=55.4
Q ss_pred HHHHHHHhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHhcC
Q 015887 22 VLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN-VAMTFLIG-GILGWIVVKLLRP 99 (398)
Q Consensus 22 ~~G~~lA~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv~-~~l~~~ig-~~lg~l~~~~~~~ 99 (398)
..|..++ +......+..+...+..-.++.|. +|..+|-.++++++.+.|..-+. .++..+++ .+..++..+.+|.
T Consensus 252 iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~ 328 (562)
T PRK05326 252 LAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLLPFRF 328 (562)
T ss_pred HHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 4455554 333344444445555555667755 79999999999998876432221 12222233 2333444566777
Q ss_pred CCCCCCeeEEEeecCCcchhHHHHH
Q 015887 100 KPHLEGLVIATCASGNLGNLLLIIV 124 (398)
Q Consensus 100 p~~~~~~vi~~~~fgN~~~LPl~li 124 (398)
|.+.+-++--+ |-=|..|+++.
T Consensus 329 ~~~e~~~i~~~---g~RG~v~i~lA 350 (562)
T PRK05326 329 NLREKLFISWV---GLRGAVPIVLA 350 (562)
T ss_pred CHhhhheeeee---cchhHHHHHHH
Confidence 76666554433 45778887665
No 32
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.05 E-value=53 Score=24.29 Aligned_cols=26 Identities=27% Similarity=0.652 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015887 73 WFMPVNVAMTFLIGGILGWIVVKLLR 98 (398)
Q Consensus 73 w~ipv~~~l~~~ig~~lg~l~~~~~~ 98 (398)
+++.+..++++++|+++||+.....+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~ 43 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSR 43 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666788888999999998875543
No 33
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=34.96 E-value=98 Score=24.07 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhc
Q 015887 82 TFLIGGILGWIVVKLLR 98 (398)
Q Consensus 82 ~~~ig~~lg~l~~~~~~ 98 (398)
.=++|...|++..+-..
T Consensus 52 iD~~Sl~aGf~~a~~m~ 68 (74)
T PF09964_consen 52 IDAVSLTAGFLYAKKML 68 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33556667776665443
No 34
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.37 E-value=68 Score=24.66 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015887 71 SWWFMPVNVAMTFLIGGILGWIVVK 95 (398)
Q Consensus 71 ~~w~ipv~~~l~~~ig~~lg~l~~~ 95 (398)
++|...+.++++.++|.+.|+.++|
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566668888889999999987764
No 35
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=34.14 E-value=1e+02 Score=31.03 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=57.4
Q ss_pred hhhcccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHhcCCCCCCCeeEEEeecCCcchhHHHHHHHHhhhC-----
Q 015887 59 SLAKTVTLEEIISWWFMPVNVAMTF-LIGGILGWIVV-KLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQ----- 131 (398)
Q Consensus 59 kla~~lt~~~i~~~w~ipv~~~l~~-~ig~~lg~l~~-~~~~~p~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~----- 131 (398)
=++.+++++++.+.+.-.+-..+.. ....++++.+. |.+|+++++.-.+-+. .|+|...
T Consensus 74 LlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~G--------------tsICGaSAi~A~ 139 (335)
T TIGR00698 74 LYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAG--------------SSICGAAAVAAI 139 (335)
T ss_pred HHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcc--------------hhHHHHHHHHHh
Confidence 3689999999999987665443333 33444445555 8999997765443222 3466532
Q ss_pred CCCCCCchhhhhhhhHHHHHHHHhhHHhhhhhchhhhc
Q 015887 132 GSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIK 169 (398)
Q Consensus 132 ~~pf~~~~~~~~rG~aYi~~~~~~g~i~~ws~g~~ll~ 169 (398)
..--+.+|+.....++-+.+|-.+.. +.+-+-++++.
T Consensus 140 a~~i~A~~~~~a~ava~V~lfgt~am-~l~P~l~~~l~ 176 (335)
T TIGR00698 140 EPVIKAEKEKVSVAIAIVVIFGTTGI-FLYPSIYHYAS 176 (335)
T ss_pred ccccCCCccceeeeehHHHHHHHHHH-HHHHHHHHHHc
Confidence 11123344456677777776666543 55555566665
No 36
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=33.89 E-value=1.4e+02 Score=30.67 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=48.5
Q ss_pred HHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCC
Q 015887 37 ADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTF-LIGGILGWIVVKLLRPKPH 102 (398)
Q Consensus 37 ~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv~~~l~~-~ig~~lg~l~~~~~~~p~~ 102 (398)
++..+++..+...+|.| +-|.++|-+++++.+.+.|..-+...... ..=.+..++..|.++.+++
T Consensus 264 ~~l~~~i~~~~~~~fip-lFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~ 329 (397)
T COG0475 264 HELEEKIEPFGDGLFIP-LFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLGFSKR 329 (397)
T ss_pred HHHHHHHHhHHhHHHHH-HHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 58888888888888887 67999999999999999887733333333 3344457888888885543
No 37
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.00 E-value=46 Score=28.51 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 015887 79 VAMTFLIGGILGWIVVKLLRPK 100 (398)
Q Consensus 79 ~~l~~~ig~~lg~l~~~~~~~p 100 (398)
+++.+++|+++|+++.|++...
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4678899999999999887665
No 38
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=31.82 E-value=1.4e+02 Score=26.31 Aligned_cols=47 Identities=15% Similarity=0.399 Sum_probs=34.6
Q ss_pred HHHHhhhcccchhhHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015887 55 LMFASLAKTVTLEEIIS---WWF-MPVNVAMTFLIGGILGWIVVKLLRPKP 101 (398)
Q Consensus 55 LiFskla~~lt~~~i~~---~w~-ipv~~~l~~~ig~~lg~l~~~~~~~p~ 101 (398)
++-..+|.++|.+++++ +|. .-+..+++..++.+.+|+..|.++.+.
T Consensus 55 iiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~ 105 (156)
T TIGR03082 55 VIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDP 105 (156)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 35678899998766655 443 344456666889999999999999883
No 39
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=31.33 E-value=60 Score=32.10 Aligned_cols=98 Identities=11% Similarity=0.164 Sum_probs=60.1
Q ss_pred hhhcccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCCeeEEEeecCCcchhHHHHHHHHhhhC-----
Q 015887 59 SLAKTVTLEEIISWWF-MPVNVAMTFLIGGILGWIVV-KLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQ----- 131 (398)
Q Consensus 59 kla~~lt~~~i~~~w~-ipv~~~l~~~ig~~lg~l~~-~~~~~p~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~----- 131 (398)
=++.+++++++.+++. ..+...+.......+++.+. |.+|+|++..-.+ ++ =.|+|...
T Consensus 68 LlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Li-a~-------------GtsICG~SAi~A~ 133 (305)
T PF03601_consen 68 LLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILI-AA-------------GTSICGASAIAAT 133 (305)
T ss_pred HHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH-Hh-------------hcccchHHHHHHH
Confidence 3789999999999987 33336666677788888888 9999997765433 22 12344421
Q ss_pred CCCCCCchhhhhhhhHHHHHHHHhhHHhhhhhchhhhccc
Q 015887 132 GSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQS 171 (398)
Q Consensus 132 ~~pf~~~~~~~~rG~aYi~~~~~~g~i~~ws~g~~ll~~~ 171 (398)
..--..+|+.....++-+.++-.+.. +.+-+-++++..+
T Consensus 134 a~~i~a~~~~~a~ava~V~lfg~vam-~~~P~l~~~l~l~ 172 (305)
T PF03601_consen 134 APVIKAKEEDVAYAVATVFLFGTVAM-FLYPLLGHALGLS 172 (305)
T ss_pred cccccCCCCceeeeehHHHHHHHHHH-HHHHHHHHHhCCC
Confidence 01122233345566666666655443 5555556666555
No 40
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=30.78 E-value=17 Score=18.26 Aligned_cols=6 Identities=50% Similarity=1.470 Sum_probs=3.8
Q ss_pred HHHHhh
Q 015887 391 HWRYLV 396 (398)
Q Consensus 391 Fw~Y~~ 396 (398)
||-|++
T Consensus 7 FWKYCv 12 (12)
T PF02083_consen 7 FWKYCV 12 (12)
T ss_pred hhhhcC
Confidence 677754
No 41
>PF10804 DUF2538: Protein of unknown function (DUF2538) ; InterPro: IPR024469 This family of proteins has no known function. ; PDB: 3KBY_B.
Probab=29.51 E-value=32 Score=29.82 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 015887 379 AMNIGKYINNNIHWRYLV 396 (398)
Q Consensus 379 A~~l~~i~q~~lFw~Y~~ 396 (398)
+||-=.++||.+||||..
T Consensus 132 gMN~Wni~~M~iFwqytA 149 (156)
T PF10804_consen 132 GMNNWNIAQMRIFWQYTA 149 (156)
T ss_dssp HHTT--HHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHH
Confidence 455557889999999974
No 42
>PRK01844 hypothetical protein; Provisional
Probab=29.24 E-value=92 Score=24.09 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015887 72 WWFMPVNVAMTFLIGGILGWIVVKL 96 (398)
Q Consensus 72 ~w~ipv~~~l~~~ig~~lg~l~~~~ 96 (398)
.|+..+..++..++|.+.|+.+.|-
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4655555677888999999887653
No 43
>COG2323 Predicted membrane protein [Function unknown]
Probab=27.97 E-value=1.7e+02 Score=27.73 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015887 14 IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIV 93 (398)
Q Consensus 14 v~kVlli~~~G~~lA~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv~~~l~~~ig~~lg~l~ 93 (398)
++|-+++..+++++. | --++|++|++...=|.=.++...++.....++=...|...+.+++..++..++.|+.
T Consensus 8 ~ir~vi~~~~l~l~~--r-----i~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 8 AIRSVIGYLILLLLL--R-----IMGKRSISQMTIFDFVVMITLGSIAGDAIFDDDVSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred HHHHHHHHHHHHHHH--H-----HhCcCccccCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665 3 456899999999999999999999999988876677666666666667777788877
Q ss_pred HHHhcC
Q 015887 94 VKLLRP 99 (398)
Q Consensus 94 ~~~~~~ 99 (398)
.|--++
T Consensus 81 ~ks~~~ 86 (224)
T COG2323 81 LKSRKL 86 (224)
T ss_pred hccHHH
Confidence 655443
No 44
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=27.32 E-value=1e+02 Score=27.25 Aligned_cols=71 Identities=31% Similarity=0.534 Sum_probs=51.4
Q ss_pred HHHHHHhhccCCCCHHHHh----hhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015887 23 LGALMATQYWNLLTADARR----SLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLR 98 (398)
Q Consensus 23 ~G~~lA~~~~~il~~~~~k----~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv~~~l~~~ig~~lg~l~~~~~~ 98 (398)
.|++++ |++=+.++| .+.++.-+-..=+++-.-+++-+.-++...+.++|- ++.+++.|..+|+++.+.+|
T Consensus 74 ~GA~la----Gllyr~~~k~~~a~lGEviGTGiIGal~sypva~~~~g~~~~~~~~v~~-F~~St~~Ga~ig~~~l~~L~ 148 (150)
T PF09512_consen 74 FGALLA----GLLYRKTKKLWAAALGEVIGTGIIGALLSYPVAKLFMGKEAALFFFVPP-FLISTLIGAIIGYILLKALK 148 (150)
T ss_pred HHHHHH----HHHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHHHHhCCchhhhhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 466665 444444444 466677777777887777787776666666666666 78899999999999998876
No 45
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=27.08 E-value=1.5e+02 Score=28.19 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=50.5
Q ss_pred hhchhhhhhhhHHHHHhhhcccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeeEEEeecCCcchhHH
Q 015887 43 LNKMVFTVFTPSLMFASLAKTVTLEEIISWW-FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLL 121 (398)
Q Consensus 43 ls~l~~~~FlP~LiFskla~~lt~~~i~~~w-~ipv~~~l~~~ig~~lg~l~~~~~~~p~~~~~~vi~~~~fgN~~~LPl 121 (398)
=++....+.=||-+-=-+-=.=..+.+++.| ++-..+++-..+++..++++.|.+..+++... +..+-+-.=|+
T Consensus 60 g~~~i~~lLgPAtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~-----Sl~PkSvTTpi 134 (230)
T COG1346 60 GGQWINFLLGPATVALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELIL-----SLLPKSVTTPI 134 (230)
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----HhcccccccHH
Confidence 3445555666765433333333678888877 66666788889999999999999999965432 34455555566
Q ss_pred HH
Q 015887 122 II 123 (398)
Q Consensus 122 ~l 123 (398)
++
T Consensus 135 Am 136 (230)
T COG1346 135 AM 136 (230)
T ss_pred HH
Confidence 63
No 46
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=26.23 E-value=90 Score=22.16 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015887 66 LEEIISWWFMPVNVAMTFLIGGILGWIVVKLLR 98 (398)
Q Consensus 66 ~~~i~~~w~ipv~~~l~~~ig~~lg~l~~~~~~ 98 (398)
.+++.++-|=.+.+++..++|..++..+.++.+
T Consensus 8 ~~~ii~~lP~iv~AilIl~vG~~va~~v~~~~~ 40 (53)
T PF05552_consen 8 LDQIIAYLPNIVGAILILIVGWWVAKFVRKLVR 40 (53)
T ss_dssp -----GGHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777788888999999888887754
No 47
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=26.20 E-value=4.8e+02 Score=26.90 Aligned_cols=94 Identities=14% Similarity=0.323 Sum_probs=62.5
Q ss_pred ccCCCCHHHHhhhhchh-----hhhhhhHHHHHhhh---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015887 31 YWNLLTADARRSLNKMV-----FTVFTPSLMFASLA---KTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPH 102 (398)
Q Consensus 31 ~~~il~~~~~k~ls~l~-----~~~FlP~LiFskla---~~lt~~~i~~~w~ipv~~~l~~~ig~~lg~l~~~~~~~p~~ 102 (398)
..|+++++.-|..+++. .++|.+||+-.++- +.+=.+.++.+ +|. .++..+.+.+.|-++..++..+.+
T Consensus 91 ~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~--i~~-il~g~v~A~~~g~lVG~~~G~~~~ 167 (438)
T COG3493 91 FYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRY--IPP-ILAGMVGAAAVGILVGLLFGLSFQ 167 (438)
T ss_pred HhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhh--hHH-HHHHHHHHHHHHHHHHHHhCCChH
Confidence 67999999999998775 48999999987653 22335556666 333 344445566667777777777643
Q ss_pred --CCCeeEEEeecCC-cchhHHHHHHHH
Q 015887 103 --LEGLVIATCASGN-LGNLLLIIVPAI 127 (398)
Q Consensus 103 --~~~~vi~~~~fgN-~~~LPl~li~sl 127 (398)
.-..+++.-+=|| -|.+|++.+.|=
T Consensus 168 d~~m~~vlPIM~GG~GaGavPLS~iYs~ 195 (438)
T COG3493 168 DTMMYVVLPIMGGGMGAGAVPLSEIYSS 195 (438)
T ss_pred HeeeeEEeeeccCCCCCCcccHHHHHHH
Confidence 4445555433343 488999988654
No 48
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=26.04 E-value=1.3e+02 Score=30.40 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=33.3
Q ss_pred HHHHhhhcccchhh---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC
Q 015887 55 LMFASLAKTVTLEE---IISWWFMPVNV-AMTFLIGGILGWIVVKLLRPK 100 (398)
Q Consensus 55 LiFskla~~lt~~~---i~~~w~ipv~~-~l~~~ig~~lg~l~~~~~~~p 100 (398)
.+-..+|.++|.|+ +++.|++-+.. +++..+|..+||+..|.-+.|
T Consensus 66 ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~ 115 (352)
T COG3180 66 ILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILP 115 (352)
T ss_pred HHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45567888887554 56667666654 445588999999999988777
No 49
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=25.90 E-value=3.5e+02 Score=27.82 Aligned_cols=90 Identities=12% Similarity=0.180 Sum_probs=55.7
Q ss_pred CCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCeeEEEeec
Q 015887 35 LTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLR-PKPHLEGLVIATCAS 113 (398)
Q Consensus 35 l~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ipv~~~l~~~ig~~lg~l~~~~~~-~p~~~~~~vi~~~~f 113 (398)
++.+..+.++.+...+|+=+=+- ++.+.++.++| +|+.+++...+....-+...-.+| .+|++..-+++++-+
T Consensus 270 ~~~~~i~~I~~~sLdlfl~~Alm-----sL~L~~l~~~a-~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~ 343 (398)
T TIGR00210 270 VAERAVSVIGNVSLSLFLAIALM-----SLQLWELADLA-GPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHC 343 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccc
Confidence 44458888888888888754443 57888888887 344333333222222222223334 457788888877777
Q ss_pred CC-cchhHH--HHHHHHhhh
Q 015887 114 GN-LGNLLL--IIVPAICHE 130 (398)
Q Consensus 114 gN-~~~LPl--~li~sl~~~ 130 (398)
|- .|.=|. +.++|+|+.
T Consensus 344 G~~lGatptaianm~av~~~ 363 (398)
T TIGR00210 344 GFGLGATPTAIANMQAVTER 363 (398)
T ss_pred cccccchHHHHHHHHHHHhc
Confidence 64 466665 456999874
No 50
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=24.43 E-value=78 Score=20.85 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=14.4
Q ss_pred hhhhhhhHHHHHHHHhhHH
Q 015887 140 VCSSVGLSYASFSMALGGF 158 (398)
Q Consensus 140 ~~~~rG~aYi~~~~~~g~i 158 (398)
+..++|++|+++..++...
T Consensus 12 ~aiDqgiay~Lm~~Al~~t 30 (34)
T PF06376_consen 12 KAIDQGIAYMLMLVALVVT 30 (34)
T ss_pred chhhHHHHHHHHHHHHHHH
Confidence 4679999999977765443
No 51
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=23.67 E-value=1.9e+02 Score=28.73 Aligned_cols=47 Identities=19% Similarity=0.419 Sum_probs=32.8
Q ss_pred HHHHhhhcccchhhH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Q 015887 55 LMFASLAKTVTLEEI---ISWWFMPVN-VAMTFLIGGILGWIVVKLLRPKP 101 (398)
Q Consensus 55 LiFskla~~lt~~~i---~~~w~ipv~-~~l~~~ig~~lg~l~~~~~~~p~ 101 (398)
++-..+|.++|+|.+ ++||+.-+. .+.+..++.+.+|+..|..|.++
T Consensus 33 ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~ 83 (318)
T PF05145_consen 33 ILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDR 83 (318)
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 456678888887655 455543332 44555889999999999988873
No 52
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=23.66 E-value=64 Score=26.52 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 015887 71 SWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEG 105 (398)
Q Consensus 71 ~~w~ipv~~~l~~~ig~~lg~l~~~~~~~p~~~~~ 105 (398)
++|+..+..++.+++-+++-+++.++++.|...++
T Consensus 15 sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~ 49 (108)
T PF07219_consen 15 SLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRR 49 (108)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 45666666677777778888999999999955443
No 53
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=22.46 E-value=1.2e+02 Score=23.10 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=31.0
Q ss_pred hcccchhhHHHHH--HHHHHHHHHHHHHHHHHHHHH---HHhcCCCCC
Q 015887 61 AKTVTLEEIISWW--FMPVNVAMTFLIGGILGWIVV---KLLRPKPHL 103 (398)
Q Consensus 61 a~~lt~~~i~~~w--~ipv~~~l~~~ig~~lg~l~~---~~~~~p~~~ 103 (398)
..+...+.+|-|| ++|=-.++.+.++.+.|-+-. |+.++|.+.
T Consensus 12 ~~q~~y~~lkPWwdvf~~YL~~~mlmi~v~~~~~ql~~~~~~clP~~~ 59 (65)
T PF12534_consen 12 ENQPCYRILKPWWDVFFDYLVLLMLMIFVFGGTFQLTQDKIVCLPCTS 59 (65)
T ss_pred hhHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhHHhccccceeCCCcc
Confidence 4566788999999 777777788888877775543 555777544
No 54
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=22.22 E-value=1.3e+02 Score=30.80 Aligned_cols=74 Identities=23% Similarity=0.385 Sum_probs=53.4
Q ss_pred hhchhhhhhhhHHHHHhhhc--ccchhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCeeEEEeecCC
Q 015887 43 LNKMVFTVFTPSLMFASLAK--TVTLEEIISWWF----MPVNVAMTFLIGGILGWIVVKLLRPKPHL-EGLVIATCASGN 115 (398)
Q Consensus 43 ls~l~~~~FlP~LiFskla~--~lt~~~i~~~w~----ipv~~~l~~~ig~~lg~l~~~~~~~p~~~-~~~vi~~~~fgN 115 (398)
.+.+.-.+|.|.+.+..++. .++.|+....|- +.+-++-.+.+.-.+|+.+.+.+..|+++ .++.+.+|..|=
T Consensus 107 ~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~ 186 (371)
T KOG2718|consen 107 FTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPG 186 (371)
T ss_pred ceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCC
Confidence 34444455667777666555 457888888873 33445556778888899999999999999 799998888764
Q ss_pred c
Q 015887 116 L 116 (398)
Q Consensus 116 ~ 116 (398)
.
T Consensus 187 g 187 (371)
T KOG2718|consen 187 G 187 (371)
T ss_pred c
Confidence 4
No 55
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=22.00 E-value=2.8e+02 Score=28.09 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhhccCC--CCHHHHhhhhchh------hhhhhhHHHHHhhhccc-chh---hHHHHHH-HHHHHHH
Q 015887 15 VQVLLISVLGALMATQYWNL--LTADARRSLNKMV------FTVFTPSLMFASLAKTV-TLE---EIISWWF-MPVNVAM 81 (398)
Q Consensus 15 ~kVlli~~~G~~lA~~~~~i--l~~~~~k~ls~l~------~~~FlP~LiFskla~~l-t~~---~i~~~w~-ipv~~~l 81 (398)
.|+++-...|..+ |+ ..++..+.++-+- ......-|+|+.+...+ +.+ +..+++. .-.++++
T Consensus 3 ~~ilia~vlGi~~-----G~~~~~~~~~~~l~~~G~lfi~ll~~~v~PLVf~sii~gi~~l~~~~~~g~i~~~~i~~~~~ 77 (390)
T PF00375_consen 3 LQILIAIVLGILL-----GLIDFSPEAAQWLSFPGDLFIRLLKMLVLPLVFSSIISGIASLGDAKKLGRIGGRTILYFLL 77 (390)
T ss_dssp HHHHHHHHHHHHH-----HHHTTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCHSHT-TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccccHHHHHHHHHHH
Confidence 5677777777765 34 6666666665322 23445667999988887 444 5555543 4455777
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 015887 82 TFLIGGILGWIVVKLLRPK 100 (398)
Q Consensus 82 ~~~ig~~lg~l~~~~~~~p 100 (398)
++.++.++|.++..++++-
T Consensus 78 ~t~~A~~ig~~~~~~~~pg 96 (390)
T PF00375_consen 78 TTLLAAAIGLLVALLFQPG 96 (390)
T ss_dssp HHHHHHHHHHHHHHHS-SS
T ss_pred HHHHHHHHHHHHheeeCCC
Confidence 7899999999999999877
No 56
>COG4129 Predicted membrane protein [Function unknown]
Probab=21.41 E-value=4.7e+02 Score=26.28 Aligned_cols=93 Identities=18% Similarity=0.250 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHhhhhchhhhhhhhHHHHHhhhcccchhhHHHHHHHH---------H
Q 015887 7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMP---------V 77 (398)
Q Consensus 7 i~~a~~pv~kVlli~~~G~~lA~~~~~il~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~~i~~~w~ip---------v 77 (398)
+..+++-..+.++-|.+|.++|---.=+++ ..-..=-+.+.++.|++++.++...+....+.-...++ .
T Consensus 50 ~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g--~~~~~~~v~~~i~i~~~~~~~~~~g~~~~~~~~~~ii~~~~~~~~~~~ 127 (332)
T COG4129 50 IKRSLKRALQRLLGNALGAILAVLFFLLFG--QNPIAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIPLFLIF 127 (332)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcC--ccHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcccchhHHH
Confidence 344566667777777777766631111111 11111235667889999999999966655555444322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q 015887 78 NVAMTFLIGGILGWIVVKLLRPKP 101 (398)
Q Consensus 78 ~~~l~~~ig~~lg~l~~~~~~~p~ 101 (398)
+=++.+.+|.+.|.+++.++.+|+
T Consensus 128 ~r~l~~~vG~~~a~lvn~~~~~~~ 151 (332)
T COG4129 128 NRFLLVFVGVGVAFLVNLVMPPPD 151 (332)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCch
Confidence 356677999999999999998886
No 57
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=21.01 E-value=17 Score=39.42 Aligned_cols=96 Identities=17% Similarity=0.359 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCeeEEEeecCCcchhHHHHHHHHhhhCCCCCCCchhhhh
Q 015887 66 LEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP--KPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSS 143 (398)
Q Consensus 66 ~~~i~~~w~ipv~~~l~~~ig~~lg~l~~~~~~~--p~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~ 143 (398)
.++.-+||+..+ .+++.++|...+...+- --++.+ ++.||+++=..-+|+.++||...+. .|- +.-.+
T Consensus 438 YKeVP~WWf~~i-----li~s~~l~~~~~~~~~~~~q~PwWg-~~va~~ia~vf~iPigii~AtTNq~---~GL-NiitE 507 (761)
T KOG2262|consen 438 YKEVPDWWFLAI-----LIVSLGLGLAACEGYKTQVQLPWWG-LLVACAIAFVFTIPIGIIQATTNQT---PGL-NIITE 507 (761)
T ss_pred hccCcHHHHHHH-----HHHHHHHHhhheeeecccccCchHH-HHHHHHHHHHHhccHHHhhhhccCC---ccH-HHHHH
Confidence 566667776544 44556666666666655 233444 4455688889999999999996642 111 12344
Q ss_pred hhhHHHHHHHHhhHHhhhhhchhhhccc
Q 015887 144 VGLSYASFSMALGGFFIWSYSYQLIKQS 171 (398)
Q Consensus 144 rG~aYi~~~~~~g~i~~ws~g~~ll~~~ 171 (398)
.=+.|+.=...+.+++.-+|||.-++..
T Consensus 508 ~i~Gy~~PgrPiAn~~FK~yGyism~Qa 535 (761)
T KOG2262|consen 508 YIIGYIYPGRPIANLCFKTYGYISMTQA 535 (761)
T ss_pred HHHHhhcCCchHHHHHHHHhchhhHHHH
Confidence 4456666566788899999999766543
No 58
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=20.96 E-value=3.7e+02 Score=27.86 Aligned_cols=109 Identities=17% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHH------HHHHHHHHHHHhhccCCCCHHHHhhhhchh-----hhhhhhHHHHHhhh---cccchhhHHHHHHHHHH
Q 015887 13 PIVQV------LLISVLGALMATQYWNLLTADARRSLNKMV-----FTVFTPSLMFASLA---KTVTLEEIISWWFMPVN 78 (398)
Q Consensus 13 pv~kV------lli~~~G~~lA~~~~~il~~~~~k~ls~l~-----~~~FlP~LiFskla---~~lt~~~i~~~w~ipv~ 78 (398)
|++|= ++......++. +.|+++++..+.+.+.. .++|.-||+-.++= +.+=.+...++ +|.
T Consensus 52 Pi~k~yiGGg~il~~f~ps~Lv--~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~--~p~- 126 (414)
T PF03390_consen 52 PILKDYIGGGAILCIFVPSALV--YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARF--IPP- 126 (414)
T ss_pred hhhhccCChHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHH--HHH-
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC--CCCCCeeEEEeecCC-cchhHHHHHHH
Q 015887 79 VAMTFLIGGILGWIVVKLLRPK--PHLEGLVIATCASGN-LGNLLLIIVPA 126 (398)
Q Consensus 79 ~~l~~~ig~~lg~l~~~~~~~p--~~~~~~vi~~~~fgN-~~~LPl~li~s 126 (398)
.+...+.+.++|-++..++... +...+.+++.-+=|| -|.+|++.+.+
T Consensus 127 il~g~~~a~~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya 177 (414)
T PF03390_consen 127 ILGGVIGAFLLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYA 177 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHH
No 59
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=20.65 E-value=8.9e+02 Score=24.50 Aligned_cols=115 Identities=9% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-----------------------------hccCCCCHHHHhhhhchhhhhhhhHHHHHh
Q 015887 9 VASMPIVQVLLISVLGALMAT-----------------------------QYWNLLTADARRSLNKMVFTVFTPSLMFAS 59 (398)
Q Consensus 9 ~a~~pv~kVlli~~~G~~lA~-----------------------------~~~~il~~~~~k~ls~l~~~~FlP~LiFsk 59 (398)
.....+.-+.+.+++|+++.. ++.+ +|.++.+.++.+..++|+=+=+-|
T Consensus 218 ~~i~~l~~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~~-id~~~i~~I~~~sL~~fl~~alms- 295 (368)
T PF03616_consen 218 SLIEHLALILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKYK-IDRKTIDRISGISLDLFLAMALMS- 295 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCccc-CCHHHHHHHHHHHHHHHHHHHHHh-
Q ss_pred hhcccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeeEEEeecC---CcchhHHHHHHHHhhh
Q 015887 60 LAKTVTLEEIISWW-FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASG---NLGNLLLIIVPAICHE 130 (398)
Q Consensus 60 la~~lt~~~i~~~w-~ipv~~~l~~~ig~~lg~l~~~~~~~p~~~~~~vi~~~~fg---N~~~LPl~li~sl~~~ 130 (398)
+++..+.+++ |+-+..++.+++-.+..+.+.+ -...|++..-+++++-.| =.+.==++-++|+|+.
T Consensus 296 ----l~l~~l~~~a~Plliil~~q~i~~~~f~~fv~f-r~~gkdydaavm~~G~~G~glGatp~a~anm~~v~~~ 365 (368)
T PF03616_consen 296 ----LKLWVLADYALPLLIILAVQTILMVLFAYFVTF-RVMGKDYDAAVMSAGFCGFGLGATPNAMANMQAVTEK 365 (368)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhCCChhHHHHhhhhhccCCCccHHHHHHHHHHHHh
No 60
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=20.27 E-value=3.5e+02 Score=29.47 Aligned_cols=54 Identities=9% Similarity=0.164 Sum_probs=36.1
Q ss_pred hhhhhHHHHHhhhcccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015887 49 TVFTPSLMFASLAKTVTLEEIISWWFM-PVNVAMTFLIGGILGWIVVKLLRPKPHL 103 (398)
Q Consensus 49 ~~FlP~LiFskla~~lt~~~i~~~w~i-pv~~~l~~~ig~~lg~l~~~~~~~p~~~ 103 (398)
.+|+ .|-|..+|-+++++.+.+.|.. ....++.++.=.+..++..+.++.|++.
T Consensus 271 ~lll-~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~ 325 (621)
T PRK03562 271 GLLL-GLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARPLGVPRKQ 325 (621)
T ss_pred HHHH-HHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH
Confidence 5667 4889999999999988754433 3323333333445567778889888553
Done!