Query 015887
Match_columns 398
No_of_seqs 132 out of 276
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 91.4 0.11 3.8E-06 50.4 3.5 107 264-389 19-126 (332)
2 3zux_A Transporter, ASBTNM; tr 90.1 0.83 2.8E-05 44.2 8.4 79 77-163 232-310 (332)
3 3kby_A Putative uncharacterize 24.6 15 0.0005 30.5 -0.2 29 286-314 71-102 (145)
4 4f4l_A ION transport protein; 24.0 1.4E+02 0.0047 23.5 5.6 54 113-166 36-91 (112)
5 2nwl_A GLTPH, glutamate sympor 11.0 3.9E+02 0.013 26.2 6.3 54 49-102 55-112 (422)
6 1q90_G Cytochrome B6F complex 7.2 1.9E+02 0.0063 18.5 1.4 12 269-280 5-16 (37)
7 1wrg_A LH-1, light-harvesting 6.9 5.3E+02 0.018 17.9 3.8 37 63-99 10-46 (55)
8 3rvy_A ION transport protein; 6.6 7.8E+02 0.027 21.8 6.1 49 115-163 177-230 (285)
9 1zcd_A Na(+)/H(+) antiporter 1 6.6 2.1E+02 0.0071 27.9 2.1 93 36-130 248-351 (388)
10 1q90_M Cytochrome B6F complex 6.4 5.8E+02 0.02 16.4 4.4 23 75-97 9-31 (39)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=91.45 E-value=0.11 Score=50.43 Aligned_cols=107 Identities=10% Similarity=-0.084 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHhchhhhHHhhcCCCCchhhHHHHHHHhcCccchhhhhhhccccccc-cccCCCCCcchhhhHHHHHHH
Q 015887 264 PPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIA 342 (398)
Q Consensus 264 Pp~ia~ilg~ivg~iPpLk~lf~~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g-~~~s~~~~~~iv~i~~~Rlii 342 (398)
+-.+..+++.++|..-|=.. .++... -...+.++++..|.++... .++.--++|.+....+.++++
T Consensus 19 ~~~l~i~~~~~lg~~~P~~~---------~~~~~~----i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi 85 (332)
T 3zux_A 19 TFSLWAALFAAAAFFAPDTF---------KWAGPY----IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAI 85 (332)
T ss_dssp THHHHHHHHHHHHHHCGGGT---------GGGGGG----HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcchhh---------hhhHHH----HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 34666777777776543211 111111 1246788999999999741 222223457777888999999
Q ss_pred HhHHHHHHHHHHHHcCCCCCChhHHHHHHhccCCchHHHHHHHHHHH
Q 015887 343 LPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGKYINNN 389 (398)
Q Consensus 343 lP~igi~iv~~~~~~g~~~~Dpv~~fV~~l~~~~PpA~~l~~i~q~~ 389 (398)
+|+++..+.+.. +.||.+...+++..|.|++.+...+|++.
T Consensus 86 ~Pll~~~l~~~~------~l~~~~~~Glil~~~~P~~~~s~v~t~~a 126 (332)
T 3zux_A 86 MPATAWCLSKLL------NLPAEIAVGVILVGCCPGGTASNVMTYLA 126 (332)
T ss_dssp HHHHHHHHHHHT------TCCHHHHHHHHHHHHSCCCTHHHHHHHHT
T ss_pred HHHHHHHHHHHh------CCChHHHHHHHHHhcCCchhHHHHHHHHh
Confidence 999999887643 56999999999999999998887777764
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=90.14 E-value=0.83 Score=44.18 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCeeEEEeecCCcchhHHHHHHHHhhhCCCCCCCchhhhhhhhHHHHHHHHhh
Q 015887 77 VNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALG 156 (398)
Q Consensus 77 v~~~l~~~ig~~lg~l~~~~~~~p~~~~~~vi~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rG~aYi~~~~~~g 156 (398)
+..++.+.+++.+||.+.|.+|.+++.+.-+.-.|+..|+ .+-+.+..+. |+++....--...|-..-...+
T Consensus 232 ~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~-------F~~~p~~alp~~iy~~~q~i~~ 303 (332)
T 3zux_A 232 AVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS-GLAAALAAAH-------FAAAPVVAVPGALFSVWHNISG 303 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHH-------STTCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHH-------cCCCchHHHHHHHHHHHHHHHH
Confidence 3466778999999999999999999888777776788998 3444443333 3321123323344555544555
Q ss_pred HHhhhhh
Q 015887 157 GFFIWSY 163 (398)
Q Consensus 157 ~i~~ws~ 163 (398)
.++.+-|
T Consensus 304 ~~la~~~ 310 (332)
T 3zux_A 304 SLLATYW 310 (332)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 3
>3kby_A Putative uncharacterized protein; all helical, unknown funct; 1.80A {Staphylococcus aureus}
Probab=24.64 E-value=15 Score=30.50 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=18.2
Q ss_pred cCCCCchhhHHHH---HHHhcCccchhhhhhh
Q 015887 286 IGDSAPLRVIQDS---IEILGDGTIPCITLIL 314 (398)
Q Consensus 286 ~~~~~pL~~i~~s---~~~lG~a~VPl~llvL 314 (398)
|.++.|++|+.|- .+..-+.+||++-+|-
T Consensus 71 F~tEsPfs~l~d~~~~t~~~~~i~v~~qylia 102 (145)
T 3kby_A 71 FESELPFSWVYDENGITETMKSLSIPLQYLVA 102 (145)
T ss_dssp TSCSSTTTTSEETTEECHHHHTSCHHHHHHHH
T ss_pred hccCCchhhhhcccccchhhhhccchHHHHHH
Confidence 3445889876553 3455567788777653
No 4
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=23.97 E-value=1.4e+02 Score=23.52 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=29.4
Q ss_pred cCCcchhHHHHHHHHhhhCCC--CCCCchhhhhhhhHHHHHHHHhhHHhhhhhchh
Q 015887 113 SGNLGNLLLIIVPAICHEQGS--PFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQ 166 (398)
Q Consensus 113 fgN~~~LPl~li~sl~~~~~~--pf~~~~~~~~rG~aYi~~~~~~g~i~~ws~g~~ 166 (398)
|+|.++==+.+.+-++.|+=. -..+.......+..|+..+..+++.+.-..-..
T Consensus 36 F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfia 91 (112)
T 4f4l_A 36 FGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIG 91 (112)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666556666766554211 111111122235578888888888877766443
No 5
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=10.95 E-value=3.9e+02 Score=26.19 Aligned_cols=54 Identities=20% Similarity=0.253 Sum_probs=42.2
Q ss_pred hhhhhHHHHHhhhcccc-h--hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015887 49 TVFTPSLMFASLAKTVT-L--EEIISW-WFMPVNVAMTFLIGGILGWIVVKLLRPKPH 102 (398)
Q Consensus 49 ~~FlP~LiFskla~~lt-~--~~i~~~-w~ipv~~~l~~~ig~~lg~l~~~~~~~p~~ 102 (398)
....|-|+|..+...+. . +++.++ +-.-.++++++.++..+|.++..++++-..
T Consensus 55 kmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~g 112 (422)
T 2nwl_A 55 KMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAG 112 (422)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 46778899999998885 4 566554 456667888889999999999999987643
No 6
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=7.24 E-value=1.9e+02 Score=18.49 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=7.9
Q ss_pred HHHHHHHhchhh
Q 015887 269 AIVGFIFGAVVW 280 (398)
Q Consensus 269 ~ilg~ivg~iPp 280 (398)
.+.|++.|+||-
T Consensus 5 lL~GIVlGlipv 16 (37)
T 1q90_G 5 LLCGIVLGLVPV 16 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHhhHHH
Confidence 356777777774
No 7
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=6.90 E-value=5.3e+02 Score=17.86 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=29.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015887 63 TVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (398)
Q Consensus 63 ~lt~~~i~~~w~ipv~~~l~~~ig~~lg~l~~~~~~~ 99 (398)
-+|.++-++++-+-+.....|..=.+++.++....|+
T Consensus 10 GLT~~EAqEfH~~f~~~~~~F~~iAvvAH~L~~~wrP 46 (55)
T 1wrg_A 10 GITEGEAKEFHKIFTSSILVFFGVAAFAHLLVWIWRP 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3688999999988888777777767777777777664
No 8
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=6.59 E-value=7.8e+02 Score=21.84 Aligned_cols=49 Identities=8% Similarity=-0.064 Sum_probs=28.1
Q ss_pred CcchhHHHHHHHHhhhCCCCCC-Cc-hhhhhh---hhHHHHHHHHhhHHhhhhh
Q 015887 115 NLGNLLLIIVPAICHEQGSPFG-NR-DVCSSV---GLSYASFSMALGGFFIWSY 163 (398)
Q Consensus 115 N~~~LPl~li~sl~~~~~~pf~-~~-~~~~~r---G~aYi~~~~~~g~i~~ws~ 163 (398)
|-+|+|-++..+..--.+.-|+ +- ..+... |.-|+..+..+++++..+.
T Consensus 177 ~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl 230 (285)
T 3rvy_A 177 WFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINL 230 (285)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHH
Confidence 6778888887655443344455 42 112222 3467777777777666555
No 9
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=6.58 E-value=2.1e+02 Score=27.95 Aligned_cols=93 Identities=13% Similarity=0.258 Sum_probs=57.9
Q ss_pred CHHHHhhhhchhhhhhhhHHHHHhhhcccchh---hHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHh--cCCCCC-C
Q 015887 36 TADARRSLNKMVFTVFTPSLMFASLAKTVTLE---EIISWWFMPVNVAMTF----LIG-GILGWIVVKLL--RPKPHL-E 104 (398)
Q Consensus 36 ~~~~~k~ls~l~~~~FlP~LiFskla~~lt~~---~i~~~w~ipv~~~l~~----~ig-~~lg~l~~~~~--~~p~~~-~ 104 (398)
.++..+.+...+..+++|-.-|.+.+=+++.+ .+.+- .++.+.+.. .+| +..+|+..|.. ++|+.. +
T Consensus 248 ~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~--~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~ 325 (388)
T 1zcd_A 248 AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSI--LPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTY 325 (388)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHH--SSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCH
Confidence 46678888999999999999999999999774 44331 121111111 222 22245555443 666653 2
Q ss_pred CeeEEEeecCCcchhHHHHHHHHhhh
Q 015887 105 GLVIATCASGNLGNLLLIIVPAICHE 130 (398)
Q Consensus 105 ~~vi~~~~fgN~~~LPl~li~sl~~~ 130 (398)
+-..+.++-+|++-..=.++.++.-+
T Consensus 326 ~~~~~vg~L~gigftmsL~Ia~laf~ 351 (388)
T 1zcd_A 326 QQIMVVGILCGIGFTMSIFIASLAFG 351 (388)
T ss_dssp GGGTTHHHHTTCCHHHHHHHHHHHST
T ss_pred HHHHHHHHHhccchHHHHHHHHHhcc
Confidence 34456666678887776777777664
No 10
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=6.39 E-value=5.8e+02 Score=16.40 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 015887 75 MPVNVAMTFLIGGILGWIVVKLL 97 (398)
Q Consensus 75 ipv~~~l~~~ig~~lg~l~~~~~ 97 (398)
+...+...+.+|..+|+++-|+-
T Consensus 9 ~A~i~~~L~LvGla~Gf~LLkiq 31 (39)
T 1q90_M 9 TALTMVGMTLVGLAIGFVLLRVE 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 34445667788999999988874
Done!