Query 015887
Match_columns 398
No_of_seqs 132 out of 276
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 04:15:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015887.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015887hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 28.8 20 0.0015 20.6 2.5 29 259-287 5-33 (34)
2 d1q90g_ f.23.26.1 (G:) PetG su 6.7 1E+02 0.0074 17.1 1.4 12 269-280 5-16 (30)
3 d1q90r_ f.23.12.1 (R:) ISP sub 6.4 1.7E+02 0.013 17.3 2.5 29 259-287 10-38 (39)
4 d2nwwa1 f.49.1.1 (A:12-416) Pr 5.6 5.7E+02 0.042 22.0 7.2 55 49-103 44-102 (405)
5 d1tm9a_ a.225.1.1 (A:) Hypothe 4.7 2.5E+02 0.018 20.3 3.0 19 344-362 94-112 (137)
6 d1jo5a_ f.3.1.1 (A:) Light-har 4.7 3.8E+02 0.028 16.5 3.5 38 62-99 9-46 (48)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 4.6 2.7E+02 0.02 15.0 2.4 21 145-165 3-23 (30)
8 d1lghb_ f.3.1.1 (B:) Light-har 4.5 3.9E+02 0.029 16.0 5.3 38 62-99 4-41 (43)
9 d1jb0m_ f.23.19.1 (M:) Subunit 3.8 2.5E+02 0.018 15.4 1.8 15 269-283 8-22 (31)
10 d1q90m_ f.23.25.1 (M:) PetM su 3.4 4.2E+02 0.031 14.6 2.5 15 82-96 15-29 (34)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=28.77 E-value=20 Score=20.59 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=25.2
Q ss_pred HhhhChhHHHHHHHHHHhchhhhHHhhcC
Q 015887 259 EELLAPPTLAAIVGFIFGAVVWLRNLIIG 287 (398)
Q Consensus 259 ~~~~~Pp~ia~ilg~ivg~iPpLk~lf~~ 287 (398)
++|||=-+.+.+-|...|..-|+-+-|+.
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfip 33 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcCC
Confidence 57888889999999999999998887764
No 2
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.67 E-value=1e+02 Score=17.08 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=8.6
Q ss_pred HHHHHHHhchhh
Q 015887 269 AIVGFIFGAVVW 280 (398)
Q Consensus 269 ~ilg~ivg~iPp 280 (398)
.+.|++.|+||-
T Consensus 5 ll~GivlGlipi 16 (30)
T d1q90g_ 5 LLCGIVLGLVPV 16 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHhhHHH
Confidence 356788888884
No 3
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.42 E-value=1.7e+02 Score=17.34 Aligned_cols=29 Identities=3% Similarity=-0.129 Sum_probs=21.5
Q ss_pred HhhhChhHHHHHHHHHHhchhhhHHhhcC
Q 015887 259 EELLAPPTLAAIVGFIFGAVVWLRNLIIG 287 (398)
Q Consensus 259 ~~~~~Pp~ia~ilg~ivg~iPpLk~lf~~ 287 (398)
+++||=-+.+++-+-..|+.-|.-+.|+.
T Consensus 10 R~~MNLll~G~~~~~~~g~l~py~~fFvP 38 (39)
T d1q90r_ 10 RNIMNLILAGGAGLPITTLALGYGAFFVP 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccchhhhhhccceeEEecC
Confidence 46677778888888888887777776653
No 4
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=5.62 E-value=5.7e+02 Score=22.01 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=40.3
Q ss_pred hhhhhHHHHHhhhcccc-h--hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015887 49 TVFTPSLMFASLAKTVT-L--EEIISWW-FMPVNVAMTFLIGGILGWIVVKLLRPKPHL 103 (398)
Q Consensus 49 ~~FlP~LiFskla~~lt-~--~~i~~~w-~ipv~~~l~~~ig~~lg~l~~~~~~~p~~~ 103 (398)
....+-|+|..+...+. . ++++++. -.-.++++++.++..+|+++...+++....
T Consensus 44 ~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt~iA~~igl~~~~~~~pg~~~ 102 (405)
T d2nwwa1 44 KMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGI 102 (405)
T ss_dssp HHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 44567889999877773 2 4444544 455667888899999999999999987543
No 5
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=4.74 E-value=2.5e+02 Score=20.28 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHcCCCCC
Q 015887 344 PFIGVWVVKAAAALGFLPS 362 (398)
Q Consensus 344 P~igi~iv~~~~~~g~~~~ 362 (398)
|.|...+.+.++++|++.|
T Consensus 94 ~aiifci~yflyhf~fl~d 112 (137)
T d1tm9a_ 94 PAIIFCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCC
T ss_pred ceehhhHHHHHHHhccccc
Confidence 4555566788899999885
No 6
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.74 E-value=3.8e+02 Score=16.46 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=27.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015887 62 KTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (398)
Q Consensus 62 ~~lt~~~i~~~w~ipv~~~l~~~ig~~lg~l~~~~~~~ 99 (398)
+-+|-++.+|+-=+-+.....|..-++++.++..+.|+
T Consensus 9 tGLT~~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 9 TGLTDEQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp GGGHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34677778887766666667777777788888887775
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.62 E-value=2.7e+02 Score=14.97 Aligned_cols=21 Identities=10% Similarity=0.341 Sum_probs=14.5
Q ss_pred hhHHHHHHHHhhHHhhhhhch
Q 015887 145 GLSYASFSMALGGFFIWSYSY 165 (398)
Q Consensus 145 G~aYi~~~~~~g~i~~ws~g~ 165 (398)
.++|+.+|.-+-.++.+..-+
T Consensus 3 ~i~yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 3 TITYVFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHHHh
Confidence 468999888766666665433
No 8
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=4.52 E-value=3.9e+02 Score=16.01 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=29.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015887 62 KTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (398)
Q Consensus 62 ~~lt~~~i~~~w~ipv~~~l~~~ig~~lg~l~~~~~~~ 99 (398)
+.+|.++.+++-=+-+.....|..-++++.++..+.|+
T Consensus 4 sGLT~~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 4 SGLTEEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35678888888777777777777777888888888775
No 9
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=3.78 E-value=2.5e+02 Score=15.40 Aligned_cols=15 Identities=7% Similarity=0.100 Sum_probs=9.7
Q ss_pred HHHHHHHhchhhhHH
Q 015887 269 AIVGFIFGAVVWLRN 283 (398)
Q Consensus 269 ~ilg~ivg~iPpLk~ 283 (398)
..++++|+++|-+-+
T Consensus 8 v~valvial~pg~la 22 (31)
T d1jb0m_ 8 VYVALVIALLPAVLA 22 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777776543
No 10
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.37 E-value=4.2e+02 Score=14.61 Aligned_cols=15 Identities=20% Similarity=0.665 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q 015887 82 TFLIGGILGWIVVKL 96 (398)
Q Consensus 82 ~~~ig~~lg~l~~~~ 96 (398)
.+++|..+|+++-|+
T Consensus 15 ~tl~glaigfvllrv 29 (34)
T d1q90m_ 15 MTLVGLAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhheee
Confidence 456777778776654
Done!