Query 015891
Match_columns 398
No_of_seqs 354 out of 3210
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 01:51:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.5E-45 3.3E-50 401.5 18.7 339 2-373 141-512 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 6.6E-41 1.4E-45 349.4 23.1 312 41-373 161-505 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.7E-34 8E-39 268.4 12.6 246 43-305 1-249 (287)
4 PF01637 Arch_ATPase: Archaeal 99.3 1.4E-11 3E-16 111.3 12.5 198 40-247 1-232 (234)
5 TIGR03015 pepcterm_ATPase puta 99.3 1.8E-10 4E-15 106.8 18.7 182 62-251 42-240 (269)
6 PRK00411 cdc6 cell division co 99.3 1.2E-10 2.6E-15 114.2 17.8 175 36-217 28-220 (394)
7 TIGR02928 orc1/cdc6 family rep 99.3 1.4E-10 3E-15 112.5 17.0 206 35-248 12-245 (365)
8 COG1121 ZnuC ABC-type Mn/Zn tr 99.2 5E-10 1.1E-14 100.5 14.5 130 62-191 29-205 (254)
9 COG2256 MGS1 ATPase related to 99.2 1.4E-09 3.1E-14 101.9 17.2 173 38-246 24-209 (436)
10 COG1136 SalX ABC-type antimicr 99.2 2.5E-10 5.5E-15 100.9 11.4 90 109-201 119-216 (226)
11 PF05729 NACHT: NACHT domain 99.2 2.7E-10 5.8E-15 97.3 11.3 144 64-219 1-165 (166)
12 COG2884 FtsE Predicted ATPase 99.1 1.4E-09 3E-14 92.0 12.5 144 61-204 26-216 (223)
13 COG1126 GlnQ ABC-type polar am 99.1 1E-09 2.2E-14 94.9 11.8 130 61-193 26-204 (240)
14 PRK04841 transcriptional regul 99.1 2.5E-09 5.5E-14 115.9 17.4 196 33-249 9-225 (903)
15 TIGR00635 ruvB Holliday juncti 99.1 7.2E-10 1.6E-14 104.8 10.9 174 38-249 4-201 (305)
16 PRK13342 recombination factor 99.1 9.7E-10 2.1E-14 108.1 12.1 174 38-248 12-195 (413)
17 PRK06893 DNA replication initi 99.1 2.6E-09 5.7E-14 96.5 13.7 149 62-248 38-202 (229)
18 COG1120 FepC ABC-type cobalami 99.0 1.7E-09 3.6E-14 97.7 11.3 133 61-193 26-207 (258)
19 COG4608 AppF ABC-type oligopep 99.0 2.2E-09 4.7E-14 96.5 11.6 150 61-214 37-199 (268)
20 COG0488 Uup ATPase components 99.0 3E-09 6.5E-14 106.4 13.9 135 62-201 28-224 (530)
21 PRK00080 ruvB Holliday junctio 99.0 4E-09 8.7E-14 100.7 12.1 174 37-248 24-221 (328)
22 COG1124 DppF ABC-type dipeptid 99.0 7.8E-09 1.7E-13 91.1 12.3 144 61-205 31-222 (252)
23 PRK07003 DNA polymerase III su 99.0 1.5E-07 3.3E-12 96.1 23.0 195 38-247 16-218 (830)
24 cd03238 ABC_UvrA The excision 99.0 1.4E-08 3.1E-13 87.6 13.4 127 61-201 19-162 (176)
25 COG1116 TauB ABC-type nitrate/ 98.9 2E-08 4.4E-13 89.2 13.6 138 61-201 27-205 (248)
26 TIGR03420 DnaA_homol_Hda DnaA 98.9 2.2E-08 4.8E-13 90.3 13.6 170 38-249 15-201 (226)
27 cd03214 ABC_Iron-Siderophores_ 98.9 2.8E-08 6E-13 86.4 13.1 126 62-191 24-164 (180)
28 PRK12402 replication factor C 98.9 4.7E-08 1E-12 93.7 15.6 197 38-248 15-225 (337)
29 PRK14949 DNA polymerase III su 98.9 3.4E-08 7.4E-13 102.5 15.1 196 38-249 16-220 (944)
30 cd03235 ABC_Metallic_Cations A 98.9 2.8E-08 6.2E-13 88.8 12.7 137 62-200 24-205 (213)
31 COG4181 Predicted ABC-type tra 98.9 5.5E-08 1.2E-12 81.0 13.1 130 62-191 35-213 (228)
32 PRK14961 DNA polymerase III su 98.9 6.7E-08 1.4E-12 93.5 15.9 195 38-248 16-219 (363)
33 PRK13537 nodulation ABC transp 98.9 3.5E-08 7.5E-13 93.2 13.2 130 62-194 32-207 (306)
34 COG0488 Uup ATPase components 98.9 2.6E-08 5.7E-13 99.7 12.9 139 61-202 346-511 (530)
35 TIGR00960 3a0501s02 Type II (G 98.9 5.2E-08 1.1E-12 87.3 13.7 137 62-200 28-211 (216)
36 cd03222 ABC_RNaseL_inhibitor T 98.9 4.1E-08 8.9E-13 84.8 12.4 117 62-201 24-146 (177)
37 TIGR02324 CP_lyasePhnL phospho 98.9 9.9E-08 2.1E-12 86.0 15.4 89 112-202 129-224 (224)
38 cd03269 ABC_putative_ATPase Th 98.8 3.7E-08 8.1E-13 87.9 12.4 130 62-191 25-194 (210)
39 TIGR01188 drrA daunorubicin re 98.8 3.7E-08 8E-13 92.9 12.9 132 62-193 18-192 (302)
40 cd03226 ABC_cobalt_CbiO_domain 98.8 6.3E-08 1.4E-12 86.0 13.6 137 62-200 25-199 (205)
41 COG1131 CcmA ABC-type multidru 98.8 1E-08 2.3E-13 95.9 8.9 130 62-194 30-206 (293)
42 PLN03025 replication factor C 98.8 4.8E-08 1E-12 92.9 13.6 182 38-248 13-199 (319)
43 PRK12323 DNA polymerase III su 98.8 4.6E-08 1E-12 98.5 13.8 202 38-249 16-225 (700)
44 PRK14956 DNA polymerase III su 98.8 5.7E-08 1.2E-12 95.3 14.2 194 38-247 18-220 (484)
45 cd03216 ABC_Carb_Monos_I This 98.8 2E-08 4.2E-13 85.9 9.8 118 62-191 25-148 (163)
46 PF13401 AAA_22: AAA domain; P 98.8 1.5E-08 3.2E-13 83.1 8.7 114 62-184 3-125 (131)
47 cd03259 ABC_Carb_Solutes_like 98.8 6.9E-08 1.5E-12 86.3 13.6 130 62-191 25-197 (213)
48 PRK14960 DNA polymerase III su 98.8 7.9E-08 1.7E-12 97.0 15.3 196 38-248 15-218 (702)
49 COG1135 AbcC ABC-type metal io 98.8 2E-08 4.3E-13 91.4 9.9 153 61-214 30-231 (339)
50 cd03225 ABC_cobalt_CbiO_domain 98.8 7.5E-08 1.6E-12 86.0 13.7 137 62-200 26-207 (211)
51 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.8 5.9E-08 1.3E-12 87.5 12.9 127 62-191 47-208 (224)
52 PRK04195 replication factor C 98.8 4.5E-08 9.7E-13 98.3 13.2 179 38-247 14-200 (482)
53 cd03223 ABCD_peroxisomal_ALDP 98.8 8E-08 1.7E-12 82.4 12.9 129 62-200 26-160 (166)
54 PRK11248 tauB taurine transpor 98.8 8.5E-08 1.9E-12 88.2 13.8 137 62-200 26-202 (255)
55 PF13191 AAA_16: AAA ATPase do 98.8 8.9E-09 1.9E-13 89.6 6.9 47 39-86 1-47 (185)
56 cd03265 ABC_DrrA DrrA is the A 98.8 5.7E-08 1.2E-12 87.3 12.3 137 62-200 25-205 (220)
57 PRK14963 DNA polymerase III su 98.8 5.7E-08 1.2E-12 97.2 13.2 193 38-247 14-215 (504)
58 cd03266 ABC_NatA_sodium_export 98.8 4.9E-08 1.1E-12 87.6 11.6 130 62-191 30-202 (218)
59 PF05496 RuvB_N: Holliday junc 98.8 4.4E-08 9.6E-13 86.1 10.9 171 37-245 23-217 (233)
60 cd03293 ABC_NrtD_SsuB_transpor 98.8 9.2E-08 2E-12 86.0 13.4 130 62-191 29-198 (220)
61 cd03261 ABC_Org_Solvent_Resist 98.8 1.3E-07 2.7E-12 86.0 14.2 131 62-192 25-204 (235)
62 PF13173 AAA_14: AAA domain 98.8 3.2E-08 7E-13 81.0 9.3 119 63-207 2-126 (128)
63 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 8.8E-08 1.9E-12 80.1 12.1 113 62-200 25-140 (144)
64 PRK05564 DNA polymerase III su 98.8 2E-07 4.2E-12 88.5 15.9 178 38-249 4-190 (313)
65 PRK08727 hypothetical protein; 98.8 1.7E-07 3.6E-12 85.0 14.8 167 38-246 19-201 (233)
66 cd03237 ABC_RNaseL_inhibitor_d 98.8 7E-08 1.5E-12 88.1 12.2 136 62-200 24-189 (246)
67 TIGR01166 cbiO cobalt transpor 98.8 7.8E-08 1.7E-12 84.4 12.0 122 62-186 17-188 (190)
68 PRK13536 nodulation factor exp 98.8 8.9E-08 1.9E-12 91.5 13.3 134 61-194 65-241 (340)
69 PRK11247 ssuB aliphatic sulfon 98.8 1.3E-07 2.8E-12 87.0 13.9 130 62-191 37-200 (257)
70 cd03263 ABC_subfamily_A The AB 98.8 7.9E-08 1.7E-12 86.4 12.3 131 62-192 27-199 (220)
71 TIGR02673 FtsE cell division A 98.8 8.3E-08 1.8E-12 85.9 12.3 137 62-200 27-210 (214)
72 PRK14964 DNA polymerase III su 98.8 1.4E-07 3E-12 93.5 14.8 195 38-247 13-215 (491)
73 cd03230 ABC_DR_subfamily_A Thi 98.8 7.2E-08 1.6E-12 83.3 11.5 130 62-200 25-168 (173)
74 cd03264 ABC_drug_resistance_li 98.8 8.5E-08 1.8E-12 85.6 12.3 134 65-200 27-202 (211)
75 TIGR03522 GldA_ABC_ATP gliding 98.8 1.1E-07 2.3E-12 89.7 13.5 130 62-194 27-201 (301)
76 cd03301 ABC_MalK_N The N-termi 98.8 1.3E-07 2.9E-12 84.5 13.5 130 62-191 25-197 (213)
77 PRK08084 DNA replication initi 98.8 1.7E-07 3.7E-12 85.0 14.3 169 38-248 22-208 (235)
78 cd03218 ABC_YhbG The ABC trans 98.8 1E-07 2.2E-12 86.4 12.9 137 62-200 25-206 (232)
79 PRK14955 DNA polymerase III su 98.8 1E-07 2.2E-12 93.3 13.7 204 37-248 15-227 (397)
80 cd03229 ABC_Class3 This class 98.8 6.6E-08 1.4E-12 83.9 11.1 130 62-200 25-174 (178)
81 cd03292 ABC_FtsE_transporter F 98.8 1.4E-07 3E-12 84.4 13.4 137 62-200 26-209 (214)
82 cd00009 AAA The AAA+ (ATPases 98.8 1E-07 2.2E-12 79.1 11.8 121 41-185 1-130 (151)
83 cd03247 ABCC_cytochrome_bd The 98.8 1.5E-07 3.3E-12 81.6 13.3 129 62-200 27-169 (178)
84 PRK00440 rfc replication facto 98.8 2E-07 4.2E-12 88.7 15.2 181 38-248 17-202 (319)
85 TIGR02314 ABC_MetN D-methionin 98.8 8E-08 1.7E-12 91.8 12.4 133 62-194 30-210 (343)
86 PRK13341 recombination factor 98.8 8.5E-08 1.8E-12 99.6 13.5 170 38-247 28-215 (725)
87 COG0444 DppD ABC-type dipeptid 98.8 2.2E-08 4.8E-13 92.0 8.2 103 111-214 130-243 (316)
88 TIGR03771 anch_rpt_ABC anchore 98.8 1.9E-07 4.1E-12 84.1 14.2 130 62-191 5-179 (223)
89 cd03297 ABC_ModC_molybdenum_tr 98.8 1.9E-07 4.1E-12 83.6 14.0 130 61-191 22-198 (214)
90 PRK11650 ugpC glycerol-3-phosp 98.8 7.5E-08 1.6E-12 92.6 12.1 132 62-193 29-203 (356)
91 PRK13543 cytochrome c biogenes 98.8 2E-07 4.4E-12 83.4 14.2 132 61-192 35-204 (214)
92 PRK13647 cbiO cobalt transport 98.8 1.4E-07 3.1E-12 87.6 13.5 132 62-193 30-206 (274)
93 PRK13651 cobalt transporter AT 98.8 1.4E-07 3E-12 89.0 13.5 82 112-193 145-233 (305)
94 PRK13538 cytochrome c biogenes 98.8 1.7E-07 3.8E-12 83.1 13.5 130 62-191 26-195 (204)
95 TIGR01288 nodI ATP-binding ABC 98.8 1E-07 2.3E-12 89.9 12.7 132 62-193 29-203 (303)
96 PRK06645 DNA polymerase III su 98.8 1.6E-07 3.6E-12 93.6 14.6 198 38-247 21-227 (507)
97 COG0396 sufC Cysteine desulfur 98.8 2.6E-07 5.5E-12 80.9 13.9 130 61-191 28-210 (251)
98 PTZ00112 origin recognition co 98.8 2.5E-07 5.3E-12 95.3 16.0 176 37-218 754-950 (1164)
99 cd03298 ABC_ThiQ_thiamine_tran 98.8 6.4E-08 1.4E-12 86.4 10.7 131 61-191 22-195 (211)
100 PRK14957 DNA polymerase III su 98.8 2.6E-07 5.6E-12 92.8 16.0 179 38-247 16-218 (546)
101 PRK09544 znuC high-affinity zi 98.8 9.8E-08 2.1E-12 87.5 12.0 137 62-200 29-194 (251)
102 PRK14962 DNA polymerase III su 98.7 3.1E-07 6.7E-12 91.2 16.3 190 38-245 14-214 (472)
103 PRK14954 DNA polymerase III su 98.7 2.7E-07 5.9E-12 94.2 16.1 203 38-247 16-226 (620)
104 KOG0062 ATPase component of AB 98.7 3.4E-08 7.4E-13 95.3 9.0 130 62-194 105-264 (582)
105 cd03246 ABCC_Protease_Secretio 98.7 1.1E-07 2.5E-12 82.0 11.5 129 62-200 27-168 (173)
106 COG1118 CysA ABC-type sulfate/ 98.7 1.7E-07 3.6E-12 85.4 12.8 131 62-193 27-206 (345)
107 TIGR01184 ntrCD nitrate transp 98.7 1.4E-07 3.1E-12 85.3 12.6 137 62-200 10-188 (230)
108 COG3842 PotA ABC-type spermidi 98.7 4.9E-08 1.1E-12 92.2 9.7 138 62-199 30-211 (352)
109 cd03258 ABC_MetN_methionine_tr 98.7 1.3E-07 2.8E-12 85.8 12.2 131 61-191 29-207 (233)
110 PRK14951 DNA polymerase III su 98.7 2.3E-07 5.1E-12 94.4 15.3 199 38-248 16-224 (618)
111 cd03268 ABC_BcrA_bacitracin_re 98.7 1.5E-07 3.2E-12 83.9 12.4 127 62-191 25-192 (208)
112 PRK11000 maltose/maltodextrin 98.7 1.6E-07 3.5E-12 90.9 13.5 132 62-193 28-202 (369)
113 PRK08691 DNA polymerase III su 98.7 1.3E-07 2.8E-12 96.3 13.1 195 38-248 16-219 (709)
114 COG1117 PstB ABC-type phosphat 98.7 3.1E-08 6.8E-13 85.5 7.4 84 129-214 148-237 (253)
115 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.7 1.9E-07 4.2E-12 83.8 13.0 128 62-189 29-205 (218)
116 PRK13643 cbiO cobalt transport 98.7 2E-07 4.4E-12 87.3 13.6 132 62-193 31-212 (288)
117 PRK11153 metN DL-methionine tr 98.7 1.6E-07 3.5E-12 90.1 13.2 132 62-193 30-209 (343)
118 PRK15064 ABC transporter ATP-b 98.7 2E-07 4.4E-12 94.9 14.7 81 112-193 135-220 (530)
119 cd03267 ABC_NatA_like Similar 98.7 1.8E-07 3.9E-12 85.0 12.8 137 62-200 46-227 (236)
120 PRK15056 manganese/iron transp 98.7 2.6E-07 5.7E-12 85.8 14.2 132 62-193 32-210 (272)
121 PRK10908 cell division protein 98.7 5.4E-08 1.2E-12 87.6 9.3 138 61-200 26-210 (222)
122 TIGR03608 L_ocin_972_ABC putat 98.7 3.3E-07 7.1E-12 81.5 14.2 128 62-189 23-198 (206)
123 TIGR03864 PQQ_ABC_ATP ABC tran 98.7 2E-07 4.4E-12 84.7 13.1 136 62-200 26-205 (236)
124 TIGR02211 LolD_lipo_ex lipopro 98.7 3.4E-07 7.4E-12 82.3 14.4 136 62-200 30-214 (221)
125 TIGR03258 PhnT 2-aminoethylpho 98.7 1.3E-07 2.9E-12 91.0 12.4 132 62-193 30-207 (362)
126 PRK13409 putative ATPase RIL; 98.7 1.6E-07 3.5E-12 96.2 13.7 138 62-201 364-528 (590)
127 PRK07994 DNA polymerase III su 98.7 2.3E-07 5E-12 94.7 14.6 197 38-249 16-220 (647)
128 PRK14958 DNA polymerase III su 98.7 1.9E-07 4.1E-12 93.7 13.8 196 38-248 16-219 (509)
129 TIGR01277 thiQ thiamine ABC tr 98.7 2.3E-07 5.1E-12 82.9 13.1 131 61-191 22-195 (213)
130 PRK10619 histidine/lysine/argi 98.7 3.4E-07 7.3E-12 84.4 14.5 82 112-193 132-220 (257)
131 PRK11144 modC molybdate transp 98.7 2.6E-07 5.7E-12 88.9 14.1 132 62-193 23-197 (352)
132 cd03295 ABC_OpuCA_Osmoprotecti 98.7 1.6E-07 3.4E-12 85.7 12.1 131 62-192 26-203 (242)
133 PRK11432 fbpC ferric transport 98.7 1.5E-07 3.3E-12 90.2 12.4 133 62-194 31-206 (351)
134 PRK10771 thiQ thiamine transpo 98.7 9.6E-08 2.1E-12 86.6 10.5 131 62-192 24-197 (232)
135 PRK13540 cytochrome c biogenes 98.7 2E-07 4.4E-12 82.4 12.3 131 61-191 25-193 (200)
136 cd03228 ABCC_MRP_Like The MRP 98.7 1.1E-07 2.4E-12 81.9 10.4 122 62-190 27-160 (171)
137 PRK11264 putative amino-acid A 98.7 3.6E-07 7.8E-12 83.8 14.4 81 113-193 126-212 (250)
138 PRK14250 phosphate ABC transpo 98.7 3.8E-07 8.2E-12 83.2 14.4 131 62-192 28-199 (241)
139 cd03294 ABC_Pro_Gly_Bertaine T 98.7 2.6E-07 5.5E-12 85.7 13.5 131 62-192 49-228 (269)
140 cd03219 ABC_Mj1267_LivG_branch 98.7 7.2E-08 1.6E-12 87.6 9.6 81 112-192 124-210 (236)
141 TIGR03265 PhnT2 putative 2-ami 98.7 2.8E-07 6E-12 88.6 14.0 132 62-193 29-203 (353)
142 PRK09452 potA putrescine/sperm 98.7 1.6E-07 3.5E-12 90.8 12.4 132 62-193 39-213 (375)
143 PRK10851 sulfate/thiosulfate t 98.7 7.3E-08 1.6E-12 92.6 10.0 132 62-193 27-205 (353)
144 PRK11607 potG putrescine trans 98.7 1.7E-07 3.7E-12 90.8 12.6 132 62-193 44-218 (377)
145 PRK15093 antimicrobial peptide 98.7 3E-07 6.6E-12 87.7 14.2 83 112-194 136-228 (330)
146 PRK13539 cytochrome c biogenes 98.7 2.9E-07 6.3E-12 81.9 13.2 140 61-204 26-202 (207)
147 cd03224 ABC_TM1139_LivF_branch 98.7 2.2E-07 4.9E-12 83.6 12.6 131 62-192 25-199 (222)
148 cd03262 ABC_HisP_GlnQ_permease 98.7 3.4E-07 7.3E-12 81.8 13.6 137 62-200 25-208 (213)
149 PRK13649 cbiO cobalt transport 98.7 3.3E-07 7.2E-12 85.5 14.1 79 113-191 126-211 (280)
150 PRK11308 dppF dipeptide transp 98.7 4.9E-08 1.1E-12 92.9 8.6 130 62-194 40-224 (327)
151 TIGR03740 galliderm_ABC gallid 98.7 1.9E-07 4.1E-12 84.1 12.0 130 62-191 25-190 (223)
152 PRK07471 DNA polymerase III su 98.7 1E-06 2.2E-11 84.8 17.6 197 37-250 18-239 (365)
153 COG1127 Ttg2A ABC-type transpo 98.7 1.7E-07 3.7E-12 82.5 11.1 133 61-193 32-214 (263)
154 PRK13641 cbiO cobalt transport 98.7 3.8E-07 8.1E-12 85.4 14.3 82 112-193 125-213 (287)
155 PRK11124 artP arginine transpo 98.7 3.8E-07 8.3E-12 83.2 14.1 79 113-191 123-207 (242)
156 PRK11819 putative ABC transpor 98.7 2.9E-07 6.4E-12 94.2 14.7 77 116-193 149-228 (556)
157 cd03256 ABC_PhnC_transporter A 98.7 3.4E-07 7.4E-12 83.4 13.7 81 112-192 125-212 (241)
158 PRK15439 autoinducer 2 ABC tra 98.7 3E-07 6.6E-12 93.1 14.6 132 62-193 36-208 (510)
159 PRK10584 putative ABC transpor 98.7 3.7E-07 8.1E-12 82.5 13.7 136 62-200 35-219 (228)
160 PRK07764 DNA polymerase III su 98.7 7.1E-07 1.5E-11 94.0 17.5 194 38-247 15-219 (824)
161 PRK13631 cbiO cobalt transport 98.7 4.2E-07 9.2E-12 86.2 14.5 80 112-191 156-242 (320)
162 cd03236 ABC_RNaseL_inhibitor_d 98.7 3.3E-07 7.1E-12 84.1 13.3 138 62-201 25-213 (255)
163 PRK13638 cbiO cobalt transport 98.7 3.4E-07 7.3E-12 85.0 13.6 79 114-192 119-203 (271)
164 TIGR02315 ABC_phnC phosphonate 98.7 2.8E-07 6.2E-12 84.1 12.9 87 112-200 126-219 (243)
165 PRK11147 ABC transporter ATPas 98.7 3.8E-07 8.3E-12 94.8 15.4 79 113-193 140-221 (635)
166 PRK10247 putative ABC transpor 98.7 4.9E-07 1.1E-11 81.5 14.2 136 62-200 32-210 (225)
167 COG1122 CbiO ABC-type cobalt t 98.7 2.8E-07 6.2E-12 82.9 12.4 87 108-194 115-208 (235)
168 cd03296 ABC_CysA_sulfate_impor 98.7 1E-07 2.2E-12 86.8 9.7 137 62-200 27-210 (239)
169 PRK11629 lolD lipoprotein tran 98.7 5.2E-07 1.1E-11 81.9 14.3 130 62-191 34-212 (233)
170 PRK13652 cbiO cobalt transport 98.7 3.9E-07 8.5E-12 84.9 13.7 132 62-193 29-206 (277)
171 PRK09493 glnQ glutamine ABC tr 98.7 2.8E-07 6.1E-12 84.0 12.5 131 62-192 26-203 (240)
172 PRK10938 putative molybdenum t 98.7 2.6E-07 5.6E-12 93.3 13.4 131 62-192 28-202 (490)
173 PRK09536 btuD corrinoid ABC tr 98.7 1.3E-07 2.8E-12 92.1 10.7 132 62-193 28-207 (402)
174 COG3839 MalK ABC-type sugar tr 98.7 9.4E-08 2E-12 89.8 9.4 133 62-194 28-203 (338)
175 cd03231 ABC_CcmA_heme_exporter 98.7 1.2E-07 2.7E-12 83.9 9.8 129 62-190 25-190 (201)
176 COG1123 ATPase components of v 98.7 3.2E-07 6.9E-12 90.7 13.4 105 110-215 131-245 (539)
177 PRK14269 phosphate ABC transpo 98.7 4.7E-07 1E-11 82.8 13.9 131 62-192 27-208 (246)
178 TIGR01978 sufC FeS assembly AT 98.7 5.2E-07 1.1E-11 82.3 14.1 80 112-191 123-210 (243)
179 COG4555 NatA ABC-type Na+ tran 98.7 1.9E-07 4.2E-12 79.9 10.2 136 61-199 26-207 (245)
180 PRK13634 cbiO cobalt transport 98.7 5.3E-07 1.2E-11 84.5 14.4 132 62-193 32-214 (290)
181 PRK10636 putative ABC transpor 98.7 4.1E-07 8.9E-12 94.4 14.8 80 113-193 130-214 (638)
182 PRK10418 nikD nickel transport 98.7 6.6E-07 1.4E-11 82.3 14.6 131 62-192 28-208 (254)
183 TIGR02397 dnaX_nterm DNA polym 98.7 1.3E-06 2.8E-11 84.4 17.4 182 37-248 13-217 (355)
184 PRK10070 glycine betaine trans 98.7 4.8E-07 1E-11 88.1 14.2 132 62-193 53-233 (400)
185 PRK15439 autoinducer 2 ABC tra 98.7 4.1E-07 8.9E-12 92.2 14.3 81 112-192 383-470 (510)
186 PRK13646 cbiO cobalt transport 98.7 4.3E-07 9.4E-12 85.0 13.5 132 62-193 32-214 (286)
187 TIGR01242 26Sp45 26S proteasom 98.7 1.5E-07 3.2E-12 91.2 10.7 178 36-244 120-329 (364)
188 PRK09112 DNA polymerase III su 98.7 9.6E-07 2.1E-11 84.6 16.0 199 36-250 21-241 (351)
189 TIGR03873 F420-0_ABC_ATP propo 98.7 5.3E-07 1.2E-11 83.0 13.9 137 62-200 26-210 (256)
190 PRK13650 cbiO cobalt transport 98.7 2.9E-07 6.2E-12 85.9 12.1 128 62-189 32-205 (279)
191 COG3840 ThiQ ABC-type thiamine 98.7 2.8E-07 6.1E-12 77.7 10.6 149 61-213 23-218 (231)
192 PRK13637 cbiO cobalt transport 98.7 3.6E-07 7.8E-12 85.5 12.8 132 62-193 32-213 (287)
193 PRK14247 phosphate ABC transpo 98.7 4.3E-07 9.4E-12 83.3 13.1 86 113-200 124-218 (250)
194 COG1125 OpuBA ABC-type proline 98.7 3.5E-07 7.6E-12 81.1 11.8 130 61-193 25-204 (309)
195 PRK10895 lipopolysaccharide AB 98.7 1.4E-07 3.1E-12 86.0 9.9 130 62-191 28-203 (241)
196 PRK11701 phnK phosphonate C-P 98.7 6.2E-07 1.3E-11 82.7 14.2 81 113-193 132-220 (258)
197 TIGR03411 urea_trans_UrtD urea 98.6 7.2E-07 1.6E-11 81.4 14.4 81 112-192 124-209 (242)
198 PRK13545 tagH teichoic acids e 98.6 4.8E-07 1E-11 89.8 14.0 129 62-193 49-211 (549)
199 cd03260 ABC_PstB_phosphate_tra 98.6 6.3E-07 1.4E-11 80.9 13.8 79 112-191 120-206 (227)
200 PRK08903 DnaA regulatory inact 98.6 5.5E-07 1.2E-11 81.3 13.4 168 38-250 18-200 (227)
201 PRK10636 putative ABC transpor 98.6 4.3E-07 9.4E-12 94.3 14.3 131 62-193 337-495 (638)
202 PRK11831 putative ABC transpor 98.6 4.5E-07 9.8E-12 84.1 13.1 131 62-192 32-211 (269)
203 PRK11300 livG leucine/isoleuci 98.6 5E-07 1.1E-11 83.1 13.3 81 113-193 135-222 (255)
204 KOG2028 ATPase related to the 98.6 2.5E-07 5.4E-12 85.8 10.9 175 38-245 138-332 (554)
205 PRK11022 dppD dipeptide transp 98.6 4.7E-07 1E-11 86.2 13.4 83 112-194 131-223 (326)
206 PRK09087 hypothetical protein; 98.6 6.9E-07 1.5E-11 80.4 13.8 140 62-248 43-194 (226)
207 PRK10762 D-ribose transporter 98.6 4.3E-07 9.4E-12 91.9 13.9 81 112-192 375-462 (501)
208 TIGR02323 CP_lyasePhnK phospho 98.6 6.4E-07 1.4E-11 82.3 13.9 79 113-191 129-215 (253)
209 PRK14087 dnaA chromosomal repl 98.6 8.6E-06 1.9E-10 80.8 22.7 163 63-250 141-320 (450)
210 PRK05896 DNA polymerase III su 98.6 5.3E-07 1.1E-11 90.9 14.2 195 38-247 16-218 (605)
211 PRK07940 DNA polymerase III su 98.6 6.5E-07 1.4E-11 86.9 14.5 191 38-250 5-214 (394)
212 cd03257 ABC_NikE_OppD_transpor 98.6 6E-07 1.3E-11 81.1 13.5 85 114-200 127-219 (228)
213 PRK10762 D-ribose transporter 98.6 4.6E-07 9.9E-12 91.7 14.0 132 62-193 29-209 (501)
214 TIGR02770 nickel_nikD nickel i 98.6 7.5E-07 1.6E-11 80.6 14.1 130 62-191 11-192 (230)
215 PRK13541 cytochrome c biogenes 98.6 5.2E-07 1.1E-11 79.5 12.7 129 62-190 25-188 (195)
216 TIGR02633 xylG D-xylose ABC tr 98.6 5E-07 1.1E-11 91.4 14.3 81 112-192 383-470 (500)
217 PRK14952 DNA polymerase III su 98.6 1.1E-06 2.3E-11 89.2 16.4 193 38-245 13-215 (584)
218 TIGR02142 modC_ABC molybdenum 98.6 6.6E-07 1.4E-11 86.3 14.3 132 62-193 22-200 (354)
219 PRK13639 cbiO cobalt transport 98.6 7E-07 1.5E-11 83.1 14.0 129 62-193 27-205 (275)
220 PRK09580 sufC cysteine desulfu 98.6 8.8E-07 1.9E-11 81.1 14.5 62 130-191 145-211 (248)
221 COG4133 CcmA ABC-type transpor 98.6 1.6E-07 3.4E-12 79.6 8.6 123 63-186 28-191 (209)
222 PRK13548 hmuV hemin importer A 98.6 6.6E-07 1.4E-11 82.5 13.7 130 62-191 27-207 (258)
223 cd00267 ABC_ATPase ABC (ATP-bi 98.6 2.9E-07 6.4E-12 78.1 10.5 124 62-200 24-153 (157)
224 cd03300 ABC_PotA_N PotA is an 98.6 4.6E-07 1E-11 82.1 12.4 131 62-192 25-198 (232)
225 PTZ00202 tuzin; Provisional 98.6 3.1E-07 6.8E-12 88.0 11.6 166 33-213 257-430 (550)
226 PRK10575 iron-hydroxamate tran 98.6 6E-07 1.3E-11 83.1 13.4 130 62-191 36-214 (265)
227 PRK15112 antimicrobial peptide 98.6 6.1E-07 1.3E-11 83.1 13.5 131 62-192 38-217 (267)
228 cd03215 ABC_Carb_Monos_II This 98.6 6.4E-07 1.4E-11 78.0 12.9 117 62-191 25-170 (182)
229 PRK09111 DNA polymerase III su 98.6 8.1E-07 1.8E-11 90.6 15.4 200 38-248 24-232 (598)
230 PRK13546 teichoic acids export 98.6 4.7E-07 1E-11 83.6 12.4 132 62-193 49-211 (264)
231 PRK13549 xylose transporter AT 98.6 5.6E-07 1.2E-11 91.2 14.1 82 112-193 385-473 (506)
232 PRK09700 D-allose transporter 98.6 6E-07 1.3E-11 91.1 14.3 82 112-193 126-213 (510)
233 PRK11231 fecE iron-dicitrate t 98.6 2.2E-07 4.8E-12 85.5 10.1 82 112-193 119-206 (255)
234 PRK09700 D-allose transporter 98.6 6.6E-07 1.4E-11 90.8 14.3 87 112-200 389-482 (510)
235 PRK05642 DNA replication initi 98.6 1.1E-06 2.4E-11 79.6 14.4 148 63-248 45-207 (234)
236 PRK14259 phosphate ABC transpo 98.6 1.3E-06 2.7E-11 81.1 15.0 71 129-201 153-227 (269)
237 TIGR03269 met_CoM_red_A2 methy 98.6 6.2E-07 1.3E-11 91.2 14.1 86 113-200 404-501 (520)
238 PRK11819 putative ABC transpor 98.6 8.1E-07 1.8E-11 91.0 15.0 136 62-200 349-515 (556)
239 TIGR01186 proV glycine betaine 98.6 5E-07 1.1E-11 86.9 12.6 132 62-193 18-198 (363)
240 PRK15064 ABC transporter ATP-b 98.6 6E-07 1.3E-11 91.5 14.0 136 62-200 344-508 (530)
241 PF00308 Bac_DnaA: Bacterial d 98.6 6.3E-07 1.4E-11 80.3 12.5 153 62-243 33-202 (219)
242 TIGR03719 ABC_ABC_ChvD ATP-bin 98.6 8.8E-07 1.9E-11 90.7 15.2 65 128-193 159-226 (552)
243 PRK13549 xylose transporter AT 98.6 7.2E-07 1.6E-11 90.4 14.4 132 62-193 30-211 (506)
244 PRK09984 phosphonate/organopho 98.6 9.2E-07 2E-11 81.7 13.9 81 112-192 133-220 (262)
245 PRK13644 cbiO cobalt transport 98.6 5.9E-07 1.3E-11 83.5 12.6 129 62-190 27-201 (274)
246 PRK11288 araG L-arabinose tran 98.6 7.4E-07 1.6E-11 90.2 14.4 82 111-192 375-463 (501)
247 TIGR01189 ccmA heme ABC export 98.6 5E-07 1.1E-11 79.8 11.5 124 62-185 25-187 (198)
248 PRK13409 putative ATPase RIL; 98.6 4.3E-07 9.2E-12 93.1 12.6 131 62-193 98-279 (590)
249 PLN03073 ABC transporter F fam 98.6 6.7E-07 1.5E-11 93.5 14.3 136 62-200 534-697 (718)
250 PRK10982 galactose/methyl gala 98.6 8.1E-07 1.8E-11 89.7 14.6 132 62-193 23-202 (491)
251 PRK09473 oppD oligopeptide tra 98.6 6.4E-07 1.4E-11 85.4 12.9 82 113-194 140-231 (330)
252 cd03245 ABCC_bacteriocin_expor 98.6 5.9E-07 1.3E-11 80.7 12.1 68 130-200 140-211 (220)
253 PRK13645 cbiO cobalt transport 98.6 8.9E-07 1.9E-11 83.0 13.7 79 114-192 132-218 (289)
254 PRK15079 oligopeptide ABC tran 98.6 7.2E-07 1.6E-11 85.0 13.1 81 113-193 142-230 (331)
255 TIGR02633 xylG D-xylose ABC tr 98.6 7.4E-07 1.6E-11 90.2 14.0 132 62-193 26-209 (500)
256 TIGR03410 urea_trans_UrtE urea 98.6 7.6E-07 1.6E-11 80.6 12.7 131 62-192 25-199 (230)
257 PRK14969 DNA polymerase III su 98.6 5.2E-07 1.1E-11 91.1 12.7 196 38-248 16-219 (527)
258 TIGR00968 3a0106s01 sulfate AB 98.6 6.5E-07 1.4E-11 81.4 12.2 132 62-193 25-199 (237)
259 PRK10253 iron-enterobactin tra 98.6 8.9E-07 1.9E-11 82.0 13.3 132 62-193 32-212 (265)
260 PF05621 TniB: Bacterial TniB 98.6 6.1E-06 1.3E-10 76.0 18.4 202 37-248 33-260 (302)
261 TIGR03005 ectoine_ehuA ectoine 98.6 8.3E-07 1.8E-11 81.5 13.0 80 112-191 127-213 (252)
262 COG1474 CDC6 Cdc6-related prot 98.6 3.2E-06 7E-11 81.3 17.4 170 37-215 16-201 (366)
263 TIGR00972 3a0107s01c2 phosphat 98.6 1E-06 2.2E-11 80.7 13.4 81 113-193 122-211 (247)
264 TIGR02769 nickel_nikE nickel i 98.6 1.2E-06 2.7E-11 81.0 14.1 81 112-192 130-218 (265)
265 PRK10261 glutathione transport 98.6 7E-07 1.5E-11 92.6 13.7 83 112-194 443-533 (623)
266 PRK13640 cbiO cobalt transport 98.6 8.9E-07 1.9E-11 82.7 13.1 128 62-189 32-208 (282)
267 PRK10261 glutathione transport 98.6 1E-06 2.2E-11 91.4 14.8 82 112-193 146-237 (623)
268 PRK03695 vitamin B12-transport 98.6 9.5E-07 2.1E-11 80.9 13.0 132 62-193 21-201 (248)
269 COG1119 ModF ABC-type molybden 98.6 6.5E-07 1.4E-11 79.2 11.2 80 110-189 150-237 (257)
270 PRK10982 galactose/methyl gala 98.6 7.8E-07 1.7E-11 89.8 13.6 87 112-200 371-464 (491)
271 COG1123 ATPase components of v 98.6 6.6E-07 1.4E-11 88.5 12.5 94 111-205 408-510 (539)
272 COG3899 Predicted ATPase [Gene 98.6 8.4E-07 1.8E-11 94.4 14.3 203 39-250 1-261 (849)
273 PRK11614 livF leucine/isoleuci 98.6 4.9E-07 1.1E-11 82.2 11.0 63 130-192 137-204 (237)
274 PRK14249 phosphate ABC transpo 98.6 1.5E-06 3.2E-11 79.8 14.2 64 129-192 146-213 (251)
275 PRK11288 araG L-arabinose tran 98.6 1.1E-06 2.3E-11 89.0 14.4 131 62-192 29-207 (501)
276 CHL00131 ycf16 sulfate ABC tra 98.6 2E-06 4.4E-11 78.9 15.1 78 113-190 131-216 (252)
277 PRK14242 phosphate transporter 98.6 1.3E-06 2.8E-11 80.3 13.8 65 129-193 148-216 (253)
278 PRK14273 phosphate ABC transpo 98.6 8.4E-07 1.8E-11 81.6 12.5 64 129-192 149-216 (254)
279 PRK13632 cbiO cobalt transport 98.6 8E-07 1.7E-11 82.5 12.4 128 62-189 34-207 (271)
280 TIGR03719 ABC_ABC_ChvD ATP-bin 98.6 1.1E-06 2.4E-11 90.0 14.5 136 62-200 347-513 (552)
281 PRK03992 proteasome-activating 98.6 1.3E-06 2.9E-11 85.1 14.5 179 36-245 129-339 (389)
282 cd03244 ABCC_MRP_domain2 Domai 98.6 9.9E-07 2.2E-11 79.3 12.6 69 129-200 138-210 (221)
283 PRK13635 cbiO cobalt transport 98.6 1.1E-06 2.4E-11 81.9 13.3 129 62-190 32-206 (279)
284 PRK13648 cbiO cobalt transport 98.6 9.4E-07 2E-11 82.0 12.8 129 62-190 34-208 (269)
285 PRK13636 cbiO cobalt transport 98.6 9.4E-07 2E-11 82.6 12.8 129 62-193 31-210 (283)
286 PRK11147 ABC transporter ATPas 98.6 1E-06 2.3E-11 91.5 14.3 130 62-192 344-504 (635)
287 PRK15177 Vi polysaccharide exp 98.6 1.1E-06 2.4E-11 78.5 12.5 132 62-193 12-171 (213)
288 TIGR00678 holB DNA polymerase 98.5 2.9E-06 6.3E-11 74.2 14.9 89 147-245 95-187 (188)
289 cd03213 ABCG_EPDR ABCG transpo 98.5 1.3E-06 2.8E-11 76.9 12.7 123 61-191 33-178 (194)
290 PRK10419 nikE nickel transport 98.5 1.4E-06 3E-11 80.8 13.3 81 112-192 131-219 (268)
291 PRK13633 cobalt transporter AT 98.5 1E-06 2.2E-11 82.3 12.4 79 112-190 125-210 (280)
292 cd03232 ABC_PDR_domain2 The pl 98.5 6.6E-07 1.4E-11 78.6 10.6 129 62-200 32-182 (192)
293 PRK15134 microcin C ABC transp 98.5 1.1E-06 2.5E-11 89.4 13.9 132 62-193 311-494 (529)
294 TIGR03269 met_CoM_red_A2 methy 98.5 1.1E-06 2.3E-11 89.4 13.7 81 112-192 149-236 (520)
295 PRK14235 phosphate transporter 98.5 1.8E-06 3.9E-11 80.0 13.9 79 113-191 141-228 (267)
296 cd03217 ABC_FeS_Assembly ABC-t 98.5 1.4E-06 3E-11 77.1 12.7 120 62-190 25-169 (200)
297 cd03250 ABCC_MRP_domain1 Domai 98.5 2.4E-06 5.1E-11 75.8 14.2 126 61-190 29-193 (204)
298 COG4152 ABC-type uncharacteriz 98.5 7.6E-07 1.7E-11 78.5 10.6 131 61-193 26-198 (300)
299 cd03278 ABC_SMC_barmotin Barmo 98.5 1.5E-06 3.2E-11 76.7 12.7 124 65-190 24-181 (197)
300 TIGR03415 ABC_choXWV_ATP choli 98.5 2E-06 4.3E-11 83.2 14.4 82 112-193 145-233 (382)
301 cd03299 ABC_ModC_like Archeal 98.5 1.9E-06 4.2E-11 78.2 13.6 130 62-191 24-196 (235)
302 PRK14970 DNA polymerase III su 98.5 3E-06 6.4E-11 82.3 15.7 182 37-247 16-207 (367)
303 PRK14275 phosphate ABC transpo 98.5 1.5E-06 3.2E-11 81.4 12.9 64 129-192 181-248 (286)
304 COG4618 ArpD ABC-type protease 98.5 2.1E-06 4.5E-11 83.2 13.9 62 130-191 472-538 (580)
305 PRK14959 DNA polymerase III su 98.5 2.1E-06 4.6E-11 87.0 14.7 192 38-245 16-216 (624)
306 PRK14268 phosphate ABC transpo 98.5 1.3E-06 2.8E-11 80.5 12.2 64 129-192 153-220 (258)
307 COG4586 ABC-type uncharacteriz 98.5 9.3E-07 2E-11 79.2 10.6 158 60-218 47-250 (325)
308 cd03289 ABCC_CFTR2 The CFTR su 98.5 1E-06 2.2E-11 81.8 11.4 125 62-190 29-202 (275)
309 COG3903 Predicted ATPase [Gene 98.5 1.9E-07 4E-12 88.4 6.5 223 62-307 13-242 (414)
310 cd03248 ABCC_TAP TAP, the Tran 98.5 2.7E-06 5.8E-11 76.8 13.9 70 128-200 148-221 (226)
311 cd03252 ABCC_Hemolysin The ABC 98.5 2.4E-06 5.3E-11 77.6 13.7 62 129-190 137-202 (237)
312 COG0411 LivG ABC-type branched 98.5 2.4E-07 5.2E-12 81.9 6.6 90 109-200 127-223 (250)
313 PRK14251 phosphate ABC transpo 98.5 1.9E-06 4.1E-11 79.1 13.0 64 129-192 146-213 (251)
314 PRK14241 phosphate transporter 98.5 1.9E-06 4E-11 79.5 12.9 86 113-200 126-220 (258)
315 PRK14267 phosphate ABC transpo 98.5 1.7E-06 3.7E-11 79.5 12.6 64 129-192 148-215 (253)
316 KOG0989 Replication factor C, 98.5 1.7E-06 3.7E-11 78.8 12.0 187 38-248 36-229 (346)
317 PRK06620 hypothetical protein; 98.5 4.6E-06 9.9E-11 74.5 14.8 133 64-246 45-186 (214)
318 TIGR01187 potA spermidine/putr 98.5 3E-07 6.6E-12 87.5 7.7 82 112-193 81-169 (325)
319 PRK14245 phosphate ABC transpo 98.5 2.3E-06 5.1E-11 78.4 13.4 80 113-192 124-212 (250)
320 PRK10744 pstB phosphate transp 98.5 8.9E-07 1.9E-11 81.7 10.6 64 129-192 155-222 (260)
321 PRK14244 phosphate ABC transpo 98.5 2.4E-06 5.3E-11 78.4 13.4 79 114-192 128-215 (251)
322 TIGR02982 heterocyst_DevA ABC 98.5 5.9E-07 1.3E-11 80.7 9.1 128 62-189 30-206 (220)
323 PRK14265 phosphate ABC transpo 98.5 2.3E-06 5.1E-11 79.5 13.3 71 129-201 160-234 (274)
324 cd03369 ABCC_NFT1 Domain 2 of 98.5 4.8E-06 1E-10 74.0 14.8 69 129-200 124-196 (207)
325 cd03254 ABCC_Glucan_exporter_l 98.5 3.7E-06 8E-11 76.0 14.3 69 129-200 138-210 (229)
326 PRK13642 cbiO cobalt transport 98.5 2.1E-06 4.5E-11 80.0 12.9 129 62-190 32-206 (277)
327 PRK14264 phosphate ABC transpo 98.5 3.2E-06 6.9E-11 79.9 14.3 64 129-192 199-266 (305)
328 PRK14237 phosphate transporter 98.5 2.3E-06 4.9E-11 79.3 13.1 63 129-191 162-228 (267)
329 PLN03073 ABC transporter F fam 98.5 1.5E-06 3.3E-11 90.9 13.2 64 129-193 343-409 (718)
330 PRK14254 phosphate ABC transpo 98.5 3.1E-06 6.8E-11 79.1 14.0 131 61-191 63-245 (285)
331 PRK14950 DNA polymerase III su 98.5 3.1E-06 6.7E-11 86.9 15.2 196 38-248 16-220 (585)
332 cd03234 ABCG_White The White s 98.5 2.3E-06 4.9E-11 77.3 12.7 131 61-191 31-210 (226)
333 PRK14246 phosphate ABC transpo 98.5 2.8E-06 6.2E-11 78.2 13.5 86 113-200 131-225 (257)
334 PRK15134 microcin C ABC transp 98.5 2.2E-06 4.9E-11 87.3 14.1 80 113-192 135-224 (529)
335 PRK13547 hmuV hemin importer A 98.5 3.4E-06 7.4E-11 78.2 14.1 80 112-191 126-221 (272)
336 PRK07133 DNA polymerase III su 98.5 2.9E-06 6.4E-11 87.3 14.6 190 38-248 18-218 (725)
337 PRK14248 phosphate ABC transpo 98.5 2.9E-06 6.3E-11 78.7 13.4 64 129-192 163-230 (268)
338 cd03251 ABCC_MsbA MsbA is an e 98.5 3.2E-06 7E-11 76.7 13.5 69 129-200 137-209 (234)
339 PRK14271 phosphate ABC transpo 98.5 2.9E-06 6.3E-11 79.0 13.4 64 129-192 162-229 (276)
340 PRK08451 DNA polymerase III su 98.5 4.1E-06 8.9E-11 83.9 15.1 194 38-248 14-217 (535)
341 PRK00149 dnaA chromosomal repl 98.5 2.3E-05 5.1E-10 78.1 20.6 157 62-247 147-320 (450)
342 PRK14257 phosphate ABC transpo 98.5 1.8E-06 3.9E-11 82.2 12.0 66 128-193 223-292 (329)
343 PRK14239 phosphate transporter 98.5 2.6E-06 5.5E-11 78.3 12.7 63 129-191 147-213 (252)
344 KOG0927 Predicted transporter 98.5 1.4E-06 2.9E-11 85.0 11.1 64 130-193 221-287 (614)
345 COG4172 ABC-type uncharacteriz 98.5 1.8E-06 3.8E-11 81.4 11.5 152 62-214 312-516 (534)
346 COG3638 ABC-type phosphate/pho 98.5 1.4E-06 3.1E-11 76.6 10.2 80 114-193 130-216 (258)
347 PRK14256 phosphate ABC transpo 98.5 1.6E-06 3.4E-11 79.7 11.2 81 113-193 126-215 (252)
348 PRK14253 phosphate ABC transpo 98.5 2.6E-06 5.7E-11 78.0 12.6 65 129-193 144-212 (249)
349 PRK14953 DNA polymerase III su 98.5 7.2E-06 1.6E-10 81.9 16.6 189 38-247 16-218 (486)
350 PRK14274 phosphate ABC transpo 98.5 3.3E-06 7.1E-11 77.9 13.2 63 129-191 154-220 (259)
351 PRK14260 phosphate ABC transpo 98.5 3.3E-06 7.1E-11 77.9 13.2 65 129-193 149-217 (259)
352 cd03253 ABCC_ATM1_transporter 98.4 4.9E-06 1.1E-10 75.6 14.1 68 130-200 137-208 (236)
353 PTZ00454 26S protease regulato 98.4 4.7E-06 1E-10 81.2 14.7 178 37-245 144-353 (398)
354 PRK14086 dnaA chromosomal repl 98.4 4E-05 8.7E-10 77.6 21.6 154 64-246 315-485 (617)
355 PRK14262 phosphate ABC transpo 98.4 2.1E-06 4.5E-11 78.8 11.6 63 129-191 145-211 (250)
356 PRK05563 DNA polymerase III su 98.4 5.7E-06 1.2E-10 84.2 15.8 195 38-247 16-218 (559)
357 PRK14258 phosphate ABC transpo 98.4 4.2E-06 9E-11 77.3 13.6 65 129-193 149-219 (261)
358 COG2274 SunT ABC-type bacterio 98.4 2E-06 4.4E-11 89.2 12.6 70 129-201 608-681 (709)
359 cd03290 ABCC_SUR1_N The SUR do 98.4 6.6E-06 1.4E-10 73.8 14.4 69 129-200 139-214 (218)
360 cd03291 ABCC_CFTR1 The CFTR su 98.4 6.3E-06 1.4E-10 76.8 14.6 126 61-189 61-223 (282)
361 PRK14948 DNA polymerase III su 98.4 5.6E-06 1.2E-10 85.0 15.4 198 38-248 16-221 (620)
362 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.4 4.4E-06 9.5E-11 76.0 13.3 61 129-189 138-202 (238)
363 COG2255 RuvB Holliday junction 98.4 6.1E-06 1.3E-10 74.5 13.6 237 38-341 26-289 (332)
364 PRK14255 phosphate ABC transpo 98.4 4.7E-06 1E-10 76.5 13.5 65 129-193 147-215 (252)
365 PRK14088 dnaA chromosomal repl 98.4 7E-06 1.5E-10 81.3 15.6 158 63-247 130-303 (440)
366 PRK11160 cysteine/glutathione 98.4 2.8E-06 6.1E-11 87.4 13.2 135 61-201 364-547 (574)
367 TIGR00954 3a01203 Peroxysomal 98.4 3.4E-06 7.4E-11 88.0 13.9 137 61-201 476-652 (659)
368 PRK11176 lipid transporter ATP 98.4 3E-06 6.4E-11 87.5 13.4 69 130-201 480-552 (582)
369 PRK14272 phosphate ABC transpo 98.4 4.1E-06 8.8E-11 76.9 13.0 64 129-192 147-214 (252)
370 TIGR02203 MsbA_lipidA lipid A 98.4 2.2E-06 4.9E-11 88.2 12.5 69 130-201 469-541 (571)
371 PRK14261 phosphate ABC transpo 98.4 4.3E-06 9.3E-11 76.8 13.0 63 129-191 148-214 (253)
372 PRK06305 DNA polymerase III su 98.4 4.7E-06 1E-10 82.7 14.1 194 37-247 16-220 (451)
373 TIGR01257 rim_protein retinal- 98.4 2.3E-06 5E-11 97.4 13.2 132 62-193 955-1128(2272)
374 PRK14236 phosphate transporter 98.4 3.8E-06 8.1E-11 78.1 12.7 63 129-191 167-233 (272)
375 COG1222 RPT1 ATP-dependent 26S 98.4 8.4E-06 1.8E-10 75.8 14.4 177 38-245 151-359 (406)
376 cd03233 ABC_PDR_domain1 The pl 98.4 4.7E-06 1E-10 73.8 12.6 129 61-190 31-185 (202)
377 COG2909 MalT ATP-dependent tra 98.4 4.8E-06 1E-10 85.3 14.0 202 28-246 9-230 (894)
378 PRK14270 phosphate ABC transpo 98.4 4.6E-06 9.9E-11 76.5 13.0 65 128-192 145-213 (251)
379 TIGR02639 ClpA ATP-dependent C 98.4 9.2E-06 2E-10 85.7 16.9 154 38-215 182-356 (731)
380 cd01128 rho_factor Transcripti 98.4 5.6E-07 1.2E-11 81.9 6.7 98 61-160 14-115 (249)
381 PRK14240 phosphate transporter 98.4 2.4E-06 5.1E-11 78.4 11.0 63 129-191 145-211 (250)
382 PRK10938 putative molybdenum t 98.4 3.6E-06 7.7E-11 85.0 13.3 80 111-190 380-467 (490)
383 PRK10522 multidrug transporter 98.4 4.5E-06 9.7E-11 85.4 14.0 138 61-201 347-523 (547)
384 TIGR00958 3a01208 Conjugate Tr 98.4 3.9E-06 8.5E-11 88.5 13.8 134 61-201 505-687 (711)
385 PRK14243 phosphate transporter 98.4 5.8E-06 1.3E-10 76.5 13.4 70 129-200 150-223 (264)
386 TIGR03796 NHPM_micro_ABC1 NHPM 98.4 3.5E-06 7.5E-11 89.1 13.4 68 130-201 615-685 (710)
387 PRK14263 phosphate ABC transpo 98.4 6.4E-06 1.4E-10 76.0 13.5 63 130-192 149-215 (261)
388 cd03288 ABCC_SUR2 The SUR doma 98.4 5.9E-06 1.3E-10 76.1 13.2 68 130-200 156-227 (257)
389 TIGR00362 DnaA chromosomal rep 98.4 1.2E-05 2.7E-10 79.0 16.2 157 63-247 136-308 (405)
390 PRK13657 cyclic beta-1,2-gluca 98.4 2.9E-06 6.2E-11 87.7 12.2 68 130-200 471-542 (588)
391 PRK11174 cysteine/glutathione 98.4 3.3E-06 7.1E-11 87.3 12.6 70 129-201 484-557 (588)
392 COG4148 ModC ABC-type molybdat 98.4 2E-06 4.4E-11 77.4 9.3 132 59-191 20-195 (352)
393 TIGR02868 CydC thiol reductant 98.4 3.1E-06 6.7E-11 86.3 12.1 121 61-184 359-528 (529)
394 TIGR02881 spore_V_K stage V sp 98.4 6.2E-06 1.3E-10 76.1 12.9 167 38-227 6-201 (261)
395 COG4988 CydD ABC-type transpor 98.4 3E-06 6.5E-11 83.8 11.2 138 61-201 345-528 (559)
396 COG4525 TauB ABC-type taurine 98.4 7.9E-06 1.7E-10 69.8 12.2 129 62-191 30-199 (259)
397 PRK14965 DNA polymerase III su 98.4 8.4E-06 1.8E-10 83.4 15.0 193 38-246 16-217 (576)
398 PRK12422 chromosomal replicati 98.4 8.1E-05 1.7E-09 73.7 21.4 153 63-244 141-308 (445)
399 COG3845 ABC-type uncharacteriz 98.4 3.9E-06 8.5E-11 81.2 11.6 132 62-194 29-209 (501)
400 TIGR01257 rim_protein retinal- 98.4 4E-06 8.7E-11 95.6 13.5 132 63-194 1965-2139(2272)
401 PRK14252 phosphate ABC transpo 98.4 6.2E-06 1.3E-10 76.3 12.8 65 129-193 160-228 (265)
402 cd03270 ABC_UvrA_I The excisio 98.4 2.2E-06 4.7E-11 77.4 9.4 86 114-202 119-213 (226)
403 TIGR02857 CydD thiol reductant 98.4 6.9E-06 1.5E-10 83.8 14.2 61 130-190 458-522 (529)
404 TIGR03375 type_I_sec_LssB type 98.4 4.4E-06 9.5E-11 88.0 13.0 68 130-200 601-672 (694)
405 TIGR02880 cbbX_cfxQ probable R 98.4 1.9E-05 4.1E-10 73.7 15.8 166 38-226 22-217 (284)
406 PRK14238 phosphate transporter 98.4 1.1E-05 2.5E-10 74.8 14.3 64 129-192 166-233 (271)
407 CHL00181 cbbX CbbX; Provisiona 98.3 2.2E-05 4.7E-10 73.3 15.9 166 38-226 23-218 (287)
408 TIGR01193 bacteriocin_ABC ABC- 98.3 6.2E-06 1.3E-10 87.1 13.8 68 130-200 611-681 (708)
409 PHA02544 44 clamp loader, smal 98.3 1.4E-05 3.1E-10 75.9 14.8 135 38-205 21-162 (316)
410 KOG0927 Predicted transporter 98.3 2.4E-06 5.3E-11 83.3 9.4 132 59-191 412-572 (614)
411 PRK14266 phosphate ABC transpo 98.3 8.4E-06 1.8E-10 74.7 12.5 63 129-191 145-211 (250)
412 TIGR01842 type_I_sec_PrtD type 98.3 1.3E-05 2.9E-10 81.9 15.1 69 129-200 453-526 (544)
413 PRK10790 putative multidrug tr 98.3 9.5E-06 2.1E-10 83.9 14.0 137 61-200 365-547 (592)
414 TIGR03345 VI_ClpV1 type VI sec 98.3 5.5E-06 1.2E-10 88.3 12.4 152 38-215 187-361 (852)
415 PRK14971 DNA polymerase III su 98.3 1.8E-05 4E-10 81.3 15.8 196 38-247 17-220 (614)
416 COG1137 YhbG ABC-type (unclass 98.3 4.1E-07 8.8E-12 77.9 3.0 85 112-197 120-211 (243)
417 TIGR03797 NHPM_micro_ABC2 NHPM 98.3 6.7E-06 1.4E-10 86.5 12.7 67 130-200 588-657 (686)
418 PRK06647 DNA polymerase III su 98.3 2.2E-05 4.8E-10 79.8 15.9 195 38-247 16-218 (563)
419 cd03272 ABC_SMC3_euk Eukaryoti 98.3 8.6E-06 1.9E-10 74.3 11.7 61 130-190 158-226 (243)
420 cd03271 ABC_UvrA_II The excisi 98.3 2.2E-05 4.8E-10 72.0 14.2 85 115-202 152-246 (261)
421 TIGR02204 MsbA_rel ABC transpo 98.3 1.1E-05 2.3E-10 83.3 13.7 68 130-200 476-547 (576)
422 TIGR02903 spore_lon_C ATP-depe 98.3 1.2E-05 2.6E-10 82.8 13.8 45 38-86 154-198 (615)
423 COG0410 LivF ABC-type branched 98.3 5.2E-06 1.1E-10 73.0 9.4 70 130-199 136-211 (237)
424 COG4619 ABC-type uncharacteriz 98.3 2.7E-05 5.8E-10 65.0 13.1 135 63-202 29-209 (223)
425 PTZ00361 26 proteosome regulat 98.3 1E-05 2.2E-10 79.5 12.6 177 38-245 183-391 (438)
426 COG1129 MglA ABC-type sugar tr 98.3 7.2E-06 1.6E-10 80.7 11.4 130 62-194 33-214 (500)
427 PRK09376 rho transcription ter 98.3 7.9E-07 1.7E-11 84.7 4.6 106 50-160 159-268 (416)
428 PRK05707 DNA polymerase III su 98.3 2.6E-05 5.7E-10 74.1 14.9 96 147-250 105-204 (328)
429 COG4598 HisP ABC-type histidin 98.3 7.2E-06 1.6E-10 69.1 9.6 81 111-191 132-218 (256)
430 TIGR03689 pup_AAA proteasome A 98.3 9.4E-06 2E-10 80.9 12.2 164 37-219 181-380 (512)
431 CHL00176 ftsH cell division pr 98.3 2E-05 4.3E-10 81.2 14.9 178 35-243 180-388 (638)
432 TIGR01241 FtsH_fam ATP-depende 98.3 2.9E-05 6.2E-10 78.4 15.9 178 35-243 52-260 (495)
433 TIGR01192 chvA glucan exporter 98.3 1.1E-05 2.5E-10 83.1 13.2 68 130-200 471-542 (585)
434 PLN03211 ABC transporter G-25; 98.3 7.7E-06 1.7E-10 85.0 12.0 124 62-186 93-267 (659)
435 TIGR01194 cyc_pep_trnsptr cycl 98.3 1.5E-05 3.2E-10 81.8 14.0 137 61-200 366-543 (555)
436 TIGR01846 type_I_sec_HlyB type 98.2 9.9E-06 2.1E-10 85.3 12.8 69 129-200 592-664 (694)
437 cd03273 ABC_SMC2_euk Eukaryoti 98.2 2.5E-05 5.4E-10 71.7 13.9 89 110-201 125-242 (251)
438 PRK07399 DNA polymerase III su 98.2 2.2E-05 4.8E-10 74.2 13.7 196 38-248 4-220 (314)
439 PRK10789 putative multidrug tr 98.2 1.5E-05 3.3E-10 81.9 13.6 68 130-200 451-522 (569)
440 PF00005 ABC_tran: ABC transpo 98.2 2.9E-06 6.4E-11 70.0 6.7 94 63-159 11-137 (137)
441 cd03240 ABC_Rad50 The catalyti 98.2 6.9E-06 1.5E-10 72.8 9.4 68 131-201 116-196 (204)
442 cd03274 ABC_SMC4_euk Eukaryoti 98.2 1.4E-05 3.1E-10 71.3 11.3 60 131-190 128-195 (212)
443 PRK10535 macrolide transporter 98.2 8.7E-06 1.9E-10 84.8 11.0 129 62-190 33-209 (648)
444 COG4107 PhnK ABC-type phosphon 98.2 2.1E-05 4.6E-10 66.0 11.0 83 109-192 128-219 (258)
445 COG4778 PhnL ABC-type phosphon 98.2 2.5E-05 5.4E-10 65.3 11.4 138 63-205 37-230 (235)
446 cd03279 ABC_sbcCD SbcCD and ot 98.2 1.6E-05 3.6E-10 71.0 11.2 62 130-191 123-199 (213)
447 COG4175 ProV ABC-type proline/ 98.2 1.5E-05 3.3E-10 73.1 10.8 130 61-192 52-232 (386)
448 TIGR00955 3a01204 The Eye Pigm 98.2 1.6E-05 3.5E-10 82.4 12.1 126 61-186 49-227 (617)
449 TIGR02858 spore_III_AA stage I 98.2 6E-05 1.3E-09 69.5 14.5 123 61-190 109-234 (270)
450 cd03276 ABC_SMC6_euk Eukaryoti 98.2 2.7E-05 5.9E-10 68.7 11.6 133 64-200 22-190 (198)
451 COG4172 ABC-type uncharacteriz 98.1 2.1E-05 4.5E-10 74.4 11.0 102 112-214 135-247 (534)
452 TIGR00767 rho transcription te 98.1 5.7E-06 1.2E-10 79.3 7.1 98 61-160 166-267 (415)
453 COG4161 ArtP ABC-type arginine 98.1 3.4E-05 7.3E-10 63.9 10.6 132 59-191 24-207 (242)
454 PF00004 AAA: ATPase family as 98.1 8.7E-06 1.9E-10 66.4 7.1 21 66-86 1-21 (132)
455 cd03275 ABC_SMC1_euk Eukaryoti 98.1 4.7E-05 1E-09 69.7 12.6 61 130-190 155-224 (247)
456 smart00382 AAA ATPases associa 98.1 4.1E-05 8.9E-10 62.5 11.1 24 63-86 2-25 (148)
457 cd03227 ABC_Class2 ABC-type Cl 98.1 1.9E-05 4.1E-10 67.3 9.2 118 64-202 22-155 (162)
458 smart00534 MUTSac ATPase domai 98.1 1E-05 2.2E-10 70.7 7.7 119 65-191 1-128 (185)
459 PF13177 DNA_pol3_delta2: DNA 98.1 9.1E-05 2E-09 63.1 13.4 138 42-204 1-162 (162)
460 CHL00095 clpC Clp protease ATP 98.1 2E-05 4.3E-10 84.3 11.3 153 38-214 179-351 (821)
461 TIGR00602 rad24 checkpoint pro 98.1 4.2E-05 9.1E-10 78.3 13.2 49 38-86 84-133 (637)
462 KOG0744 AAA+-type ATPase [Post 98.1 3.8E-05 8.2E-10 70.5 11.3 135 63-215 177-338 (423)
463 cd01131 PilT Pilus retraction 98.1 1.7E-05 3.7E-10 70.0 8.9 112 64-190 2-114 (198)
464 KOG0066 eIF2-interacting prote 98.1 4E-06 8.7E-11 79.7 5.1 103 113-216 393-500 (807)
465 PLN03232 ABC transporter C fam 98.1 3.5E-05 7.6E-10 87.4 13.5 68 130-200 1371-1442(1495)
466 TIGR02639 ClpA ATP-dependent C 98.1 3.1E-05 6.7E-10 81.8 12.3 117 38-171 454-578 (731)
467 KOG2543 Origin recognition com 98.1 5.9E-05 1.3E-09 70.9 12.4 115 38-160 6-127 (438)
468 PRK10865 protein disaggregatio 98.1 2.5E-05 5.5E-10 83.5 11.5 45 38-86 178-222 (857)
469 cd03285 ABC_MSH2_euk MutS2 hom 98.1 5.9E-06 1.3E-10 74.2 5.7 123 61-191 28-159 (222)
470 COG0593 DnaA ATPase involved i 98.1 0.00012 2.6E-09 70.7 14.7 141 62-227 112-267 (408)
471 COG4559 ABC-type hemin transpo 98.0 4.9E-05 1.1E-09 66.0 10.5 132 62-193 26-209 (259)
472 PLN03130 ABC transporter C fam 98.0 3.2E-05 6.8E-10 88.1 12.2 68 130-200 1374-1445(1622)
473 cd03280 ABC_MutS2 MutS2 homolo 98.0 3E-05 6.4E-10 68.6 9.6 22 63-84 28-49 (200)
474 COG4136 ABC-type uncharacteriz 98.0 5.8E-05 1.3E-09 61.9 10.3 135 62-201 27-208 (213)
475 cd03282 ABC_MSH4_euk MutS4 hom 98.0 1.2E-05 2.6E-10 71.2 6.9 122 62-192 28-158 (204)
476 cd03239 ABC_SMC_head The struc 98.0 7.3E-05 1.6E-09 64.7 11.7 60 131-190 95-163 (178)
477 COG4987 CydC ABC-type transpor 98.0 1.5E-05 3.4E-10 77.9 8.1 130 62-191 363-539 (573)
478 PRK11331 5-methylcytosine-spec 98.0 2.9E-05 6.2E-10 75.7 10.0 108 38-160 175-284 (459)
479 KOG0066 eIF2-interacting prote 98.0 1.4E-05 3E-10 76.1 7.6 129 61-190 611-766 (807)
480 TIGR00956 3a01205 Pleiotropic 98.0 3.6E-05 7.9E-10 86.5 12.0 154 62-215 788-1001(1394)
481 PLN00020 ribulose bisphosphate 98.0 0.00083 1.8E-08 63.8 19.0 152 60-245 145-334 (413)
482 TIGR01069 mutS2 MutS2 family p 98.0 4.6E-06 9.9E-11 87.8 4.6 44 147-190 401-450 (771)
483 TIGR01243 CDC48 AAA family ATP 98.0 0.00011 2.5E-09 77.7 15.1 177 38-245 453-659 (733)
484 COG1245 Predicted ATPase, RNas 98.0 1.4E-05 3E-10 76.6 7.3 131 62-193 366-524 (591)
485 COG1132 MdlB ABC-type multidru 98.0 8E-05 1.7E-09 76.7 13.5 70 129-201 464-537 (567)
486 PRK08116 hypothetical protein; 98.0 3E-05 6.4E-10 71.7 9.3 102 63-185 114-221 (268)
487 cd03243 ABC_MutS_homologs The 98.0 8.2E-06 1.8E-10 72.3 5.2 22 64-85 30-51 (202)
488 TIGR03346 chaperone_ClpB ATP-d 98.0 3.3E-05 7.2E-10 82.8 10.7 45 38-86 173-217 (852)
489 PRK11034 clpA ATP-dependent Cl 98.0 5.4E-05 1.2E-09 79.4 12.0 45 38-86 186-230 (758)
490 TIGR01271 CFTR_protein cystic 98.0 4.2E-05 9.1E-10 86.7 12.0 133 61-200 1243-1424(1490)
491 KOG0058 Peptide exporter, ABC 98.0 8E-05 1.7E-09 75.5 12.6 56 130-185 604-663 (716)
492 PF05673 DUF815: Protein of un 98.0 4.5E-05 9.8E-10 68.2 9.7 53 34-86 23-75 (249)
493 PLN03232 ABC transporter C fam 98.0 0.0001 2.3E-09 83.6 15.0 129 61-190 641-805 (1495)
494 COG2401 ABC-type ATPase fused 98.0 1.7E-05 3.8E-10 75.1 7.3 130 62-191 408-574 (593)
495 cd03281 ABC_MSH5_euk MutS5 hom 98.0 1.4E-05 3.1E-10 71.3 6.5 121 63-191 29-160 (213)
496 COG1223 Predicted ATPase (AAA+ 98.0 0.00016 3.5E-09 64.6 12.8 179 34-243 117-319 (368)
497 PLN03130 ABC transporter C fam 98.0 6.3E-05 1.4E-09 85.7 13.1 130 61-191 641-806 (1622)
498 PLN03140 ABC transporter G fam 98.0 4.6E-05 9.9E-10 85.7 11.8 154 62-216 905-1119(1470)
499 cd01120 RecA-like_NTPases RecA 98.0 5.4E-05 1.2E-09 63.9 9.8 119 65-186 1-138 (165)
500 PRK08058 DNA polymerase III su 98.0 0.00018 3.9E-09 68.6 14.2 164 39-215 6-180 (329)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-45 Score=401.48 Aligned_cols=339 Identities=16% Similarity=0.189 Sum_probs=270.4
Q ss_pred CcccccccCCCCCCCC-CCCCCCCCCCCCCCCCCC------CCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCC
Q 015891 2 GQVSQNGEIGGSSSDG-GDKSKPEETNVPKVSKSK------PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGV 74 (398)
Q Consensus 2 ~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~Gi 74 (398)
.||++|||++||++.. ++|++++++|+..+...+ ..+++|||+++++++..+|.. ..+++++|+||||||+
T Consensus 141 ~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l--~~~~~~vvgI~G~gGi 218 (1153)
T PLN03210 141 QALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHL--ESEEVRMVGIWGSSGI 218 (1153)
T ss_pred HHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcc--ccCceEEEEEEcCCCC
Confidence 4899999999999876 678888998887654333 346899999999999999976 6678999999999999
Q ss_pred hHHHHHHHHHcCCCCCccccceEEEEec--CCcc-----------c-HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891 75 GKTTLCQRIFHKPDVKTQFVPRIWVCTM--SGQK-----------T-AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV 140 (398)
Q Consensus 75 GKTtLa~~v~~~~~~~~~F~~~~~v~~v--~~~~-----------~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~ 140 (398)
||||||+++|+. +..+|+..+|+... +... . ...++..++..+..... . .... ...
T Consensus 219 GKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~-~---~~~~----~~~ 288 (1153)
T PLN03210 219 GKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKD-I---KIYH----LGA 288 (1153)
T ss_pred chHHHHHHHHHH--HhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCC-c---ccCC----HHH
Confidence 999999999998 78899998887531 1110 0 12234444444322111 0 0011 235
Q ss_pred HHHHHhCCCcEEEecCCCCHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHHh-hhC
Q 015891 141 LQQQLIGKRYLIVLDDFEDMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRD-SVR 218 (398)
Q Consensus 141 l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~-~~~ 218 (398)
+++.+.++++||||||||+..+++.+..... .++|++||||||+.+++..+ +..++|+++.|+. +++|.+|++ +|+
T Consensus 289 ~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~-~~~~~~~v~~l~~-~ea~~LF~~~Af~ 366 (1153)
T PLN03210 289 MEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAH-GIDHIYEVCLPSN-ELALEMFCRSAFK 366 (1153)
T ss_pred HHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhc-CCCeEEEecCCCH-HHHHHHHHHHhcC
Confidence 6778899999999999999999988876654 57899999999999999874 5678999999998 668888887 665
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChHHHHHHhhhhcCCchhHHhHHHHHhhhccCCCCCCcchhhhhhHH
Q 015891 219 DKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILRDSANLPNSKQLEEEVEKLQG 298 (398)
Q Consensus 219 ~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lpl~~~lg~~l~~~~~~~~~w~~~L~~~~~lp~~~~~~~~~~~l~~ 298 (398)
... .+....+.+++|+++|+|+|||++. +|++|+. +..++|+.+++++.+.++..+.. +|++
T Consensus 367 ~~~--~~~~~~~l~~~iv~~c~GLPLAl~v----------lgs~L~~--k~~~~W~~~l~~L~~~~~~~I~~----~L~~ 428 (1153)
T PLN03210 367 KNS--PPDGFMELASEVALRAGNLPLGLNV----------LGSYLRG--RDKEDWMDMLPRLRNGLDGKIEK----TLRV 428 (1153)
T ss_pred CCC--CcHHHHHHHHHHHHHhCCCcHHHHH----------HHHHHcC--CCHHHHHHHHHHHHhCccHHHHH----HHHH
Confidence 532 2356778899999999999999666 8888864 47799999999998765555555 9999
Q ss_pred HHHHHHH--hh-------hcchHhhhHHHHHHHHHhCCchH-HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcCC
Q 015891 299 QITKMIE--EK-------RAKQREQRKNAEELKRKCGGLPL-AAKLLGEIKAQEELRRKEKLLKDILDEIERVVAANRRP 368 (398)
Q Consensus 299 sy~~l~~--e~-------cf~~~~~~~~~~~il~~~g~~~~-~~~~l~~~~~~~~i~~~~~~mHdll~dm~~~i~~~e~~ 368 (398)
||+.|.. ++ |||.+++.+++..++..+++.+. |+..|.++ +++++..+.+.||||+|+|||+|+++|+.
T Consensus 429 SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~k-sLi~~~~~~~~MHdLl~~~~r~i~~~~~~ 507 (1153)
T PLN03210 429 SYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDK-SLIHVREDIVEMHSLLQEMGKEIVRAQSN 507 (1153)
T ss_pred hhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhc-CCEEEcCCeEEhhhHHHHHHHHHHHhhcC
Confidence 9999964 45 78888899999999999988877 99999999 99999878999999999999999999987
Q ss_pred CCCch
Q 015891 369 EPETQ 373 (398)
Q Consensus 369 ~~~~~ 373 (398)
+|+.+
T Consensus 508 ~~~~r 512 (1153)
T PLN03210 508 EPGER 512 (1153)
T ss_pred CCCcc
Confidence 77655
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-41 Score=349.41 Aligned_cols=312 Identities=24% Similarity=0.283 Sum_probs=248.0
Q ss_pred ccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCC-CCccccceEEEEecCCcccHHHHHHHHHHHc
Q 015891 41 HGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPD-VKTQFVPRIWVCTMSGQKTAESIVKRILKRL 119 (398)
Q Consensus 41 vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l 119 (398)
||.+..++.+.+.|.. ++..+++|+||||+||||||+.++++.. ++.+|+.++|+. |++.++...++.+|+..+
T Consensus 161 VG~e~~~~kl~~~L~~----d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~-VSk~f~~~~iq~~Il~~l 235 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLME----DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV-VSKEFTTRKIQQTILERL 235 (889)
T ss_pred ccHHHHHHHHHHHhcc----CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE-EcccccHHhHHHHHHHHh
Confidence 9999999999999976 3349999999999999999999999977 899999999999 999999999999999999
Q ss_pred CCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCC-CCCEEEEEeCChHHHHHhcCCCceE
Q 015891 120 GVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRG-YGERLIITSRNEKLTTEMVGEENLH 198 (398)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~-~gs~IIiTTR~~~v~~~~~~~~~~~ 198 (398)
+........ .........+.+.|..+|++|||||||+...|+.+...+|.. .||+|++|||+..|+....++...+
T Consensus 236 ~~~~~~~~~---~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~ 312 (889)
T KOG4658|consen 236 GLLDEEWED---KEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPI 312 (889)
T ss_pred ccCCcccch---hhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccc
Confidence 875433221 223677889999999999999999999998899999999854 6899999999999999844778899
Q ss_pred EcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChHHHHHHhhhhcCCchhHHhHHHHHh
Q 015891 199 QLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILR 278 (398)
Q Consensus 199 ~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lpl~~~lg~~l~~~~~~~~~w~~~L~ 278 (398)
+++.|+. +++|.||++.++......++...+.+++++++|+|+|||+.. ||..|..+ .+..+|+++.+
T Consensus 313 ~v~~L~~-~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~v----------iG~~ma~K-~t~~eW~~~~~ 380 (889)
T KOG4658|consen 313 EVECLTP-EEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNV----------LGGLLACK-KTVQEWRRALN 380 (889)
T ss_pred cccccCc-cccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHH----------HHHHhcCC-CcHHHHHHHHc
Confidence 9999999 779999999665544444444788999999999999999655 89988755 48889999999
Q ss_pred hhccC-CCCC--CcchhhhhhHHHHHHHHH-hh-hcc----hHhh----hHHHHHHHHHhCCch----------HH---H
Q 015891 279 DSANL-PNSK--QLEEEVEKLQGQITKMIE-EK-RAK----QREQ----RKNAEELKRKCGGLP----------LA---A 332 (398)
Q Consensus 279 ~~~~l-p~~~--~~~~~~~~l~~sy~~l~~-e~-cf~----~~~~----~~~~~~il~~~g~~~----------~~---~ 332 (398)
.+... +... ....++.+++.|||.|.. -+ ||. +++| .+.....|.+-||+. .| +
T Consensus 381 ~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i 460 (889)
T KOG4658|consen 381 VLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYI 460 (889)
T ss_pred cccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHH
Confidence 88743 3222 244556799999999996 33 774 4444 445555566567541 12 4
Q ss_pred HHHhhhhhhhhhhH-----HHHHHHHHHHHHHHHHHhhcCCCCCch
Q 015891 333 KLLGEIKAQEELRR-----KEKLLKDILDEIERVVAANRRPEPETQ 373 (398)
Q Consensus 333 ~~l~~~~~~~~i~~-----~~~~mHdll~dm~~~i~~~e~~~~~~~ 373 (398)
..|..+ ++....+ ..+.|||++||||.+|+.+...+.+..
T Consensus 461 ~~LV~~-~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~ 505 (889)
T KOG4658|consen 461 EELVRA-SLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQ 505 (889)
T ss_pred HHHHHH-HHHhhcccccceeEEEeeHHHHHHHHHHhccccccccce
Confidence 445555 5544433 567899999999999999666555543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.7e-34 Score=268.43 Aligned_cols=246 Identities=23% Similarity=0.368 Sum_probs=184.4
Q ss_pred chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCC
Q 015891 43 FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVD 122 (398)
Q Consensus 43 R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~ 122 (398)
|++++++|.+.|.. ..+..++|+|+||||+||||||..++++..+..+|+.++|+. ++...+...++..++.+++..
T Consensus 1 re~~~~~l~~~L~~--~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~-~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 1 REKEIEKLKDWLLD--NSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS-LSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp -HHHHHHHHHHHHT--TTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE-EES-SCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHhhC--CCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc-ccccccccccccccccccccc
Confidence 78999999999987 458899999999999999999999998866788999999999 888888889999999999887
Q ss_pred CCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 123 DGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
.... ....+.+.....+.+.+.++++||||||||+...++.+...++ ...+++||||||+..++..+......|+++
T Consensus 78 ~~~~--~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 78 DSSI--SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp -STS--SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred cccc--ccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5432 1235567788899999999999999999999987777776665 456999999999998887764446789999
Q ss_pred CCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChHHHHHHhhhhcCCchhHHhHHHHHhhhc
Q 015891 202 PLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMERKRSILRDSA 281 (398)
Q Consensus 202 ~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lpl~~~lg~~l~~~~~~~~~w~~~L~~~~ 281 (398)
+|+. ++++.||.+..+......++...+.+++|+++|+|+|+||.. +|+++..+. +..+|+++++.+.
T Consensus 156 ~L~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~----------~a~~l~~~~-~~~~w~~~~~~l~ 223 (287)
T PF00931_consen 156 PLSE-EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKL----------IASYLRSKS-TVDEWEEALEELE 223 (287)
T ss_dssp S--H-HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHH----------HHHHHHHHH-SSSSHHHHHHHHH
T ss_pred cccc-cccccccccccccccccccccccccccccccccccccccccc----------ccccccccc-ccccccccccccc
Confidence 9999 668888888554433222334455889999999999999776 666664433 6788999988777
Q ss_pred cCC--CCCCcchhhhhhHHHHHHHHH
Q 015891 282 NLP--NSKQLEEEVEKLQGQITKMIE 305 (398)
Q Consensus 282 ~lp--~~~~~~~~~~~l~~sy~~l~~ 305 (398)
+.. ........+..+..||+.|..
T Consensus 224 ~~~~~~~~~~~~~~~~l~~s~~~L~~ 249 (287)
T PF00931_consen 224 NSLRESRDYDRSVFSALELSYDSLPD 249 (287)
T ss_dssp HCHTCSSGSCHHHHHHHHHHHHSSHT
T ss_pred ccccccccccccccccceechhcCCc
Confidence 322 222456677799999999988
No 4
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.33 E-value=1.4e-11 Score=111.33 Aligned_cols=198 Identities=21% Similarity=0.282 Sum_probs=102.3
Q ss_pred cccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHH---HH-----
Q 015891 40 VHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAE---SI----- 111 (398)
Q Consensus 40 ~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~---~~----- 111 (398)
|+||+++++.|.+++.. +....+.|+|+.|+|||+|++.+.+. ....-...+|+. ........ ..
T Consensus 1 F~gR~~el~~l~~~l~~----~~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~-~~~~~~~~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLES----GPSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYID-FLEESNESSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHC-CTTBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh----hcCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEe-cccchhhhHHHHHHHHHH
Confidence 79999999999999965 45788999999999999999999987 322222334443 22222211 11
Q ss_pred -HHHHHHHcCCCCCCCC-----CcCCCchHHHHHHHHHHHhC--CCcEEEecCCCCH--------HHHHHHHhHcC---C
Q 015891 112 -VKRILKRLGVDDGTTN-----SFEGQGLAFLDYVLQQQLIG--KRYLIVLDDFEDM--------EVCKHLSKVLP---R 172 (398)
Q Consensus 112 -~~~il~~l~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~--k~~LlVLDdv~~~--------~~~~~l~~~l~---~ 172 (398)
...+...++....... .............+.+.+.. ++.+||+||++.. .....+...+. .
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 1111111211000000 00001112223333333332 4599999998833 22333443333 2
Q ss_pred CCCCEEEEEeCChHHHHH-------hcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891 173 GYGERLIITSRNEKLTTE-------MVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED 245 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 245 (398)
.....+|++.....+... +.+....+.++||+. ++++.++...+... ... +...+..++|...++|.|..
T Consensus 154 ~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~ 230 (234)
T PF01637_consen 154 QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSK-EEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRY 230 (234)
T ss_dssp -TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----H-HHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHH
T ss_pred cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCH-HHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHH
Confidence 445556666665555544 123345599999999 77899999876554 322 22344778999999999987
Q ss_pred hh
Q 015891 246 AV 247 (398)
Q Consensus 246 i~ 247 (398)
|.
T Consensus 231 l~ 232 (234)
T PF01637_consen 231 LQ 232 (234)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 5
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.31 E-value=1.8e-10 Score=106.79 Aligned_cols=182 Identities=16% Similarity=0.179 Sum_probs=106.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL 141 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l 141 (398)
....+.|+|++|+|||||++.+++.... ..+ ..+|+ +....+...++..++..++.+...... ......+...+
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~--~~~~~~~~~~l~~i~~~lG~~~~~~~~--~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL--VNTRVDAEDLLRMVAADFGLETEGRDK--AALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee--eCCCCCHHHHHHHHHHHcCCCCCCCCH--HHHHHHHHHHH
Confidence 4568999999999999999999987321 111 12233 233456678888999988876432100 01111222222
Q ss_pred HHH-HhCCCcEEEecCCCC--HHHHHHHHhHcCC----CCCCEEEEEeCChHHHHHhc---------CCCceEEcCCCCC
Q 015891 142 QQQ-LIGKRYLIVLDDFED--MEVCKHLSKVLPR----GYGERLIITSRNEKLTTEMV---------GEENLHQLQPLSD 205 (398)
Q Consensus 142 ~~~-l~~k~~LlVLDdv~~--~~~~~~l~~~l~~----~~gs~IIiTTR~~~v~~~~~---------~~~~~~~l~~L~~ 205 (398)
... ..+++.++|+||++. ...++.+...... .....|++|... .+...+. .....+.+++++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 222 256788999999994 4455555543321 122244555443 2222211 1134678999999
Q ss_pred hhHHHHHHHhhhCCCCCc-chHHHHHHHHHHHHhcCCCchhhhccCC
Q 015891 206 QESCWLIYRDSVRDKDAQ-LKSQARKDLEEKLEKLQGQNEDAVNFPS 251 (398)
Q Consensus 206 ~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~I~~~c~GlPlai~~~a~ 251 (398)
++...++.+.+...... ......+..+.|++.++|.|..|..+|.
T Consensus 195 -~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~ 240 (269)
T TIGR03015 195 -EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCD 240 (269)
T ss_pred -HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHH
Confidence 66777777654322111 1112345888999999999999877553
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=1.2e-10 Score=114.21 Aligned_cols=175 Identities=18% Similarity=0.155 Sum_probs=111.6
Q ss_pred CCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc--cceEEEEecCCcccHHHHHH
Q 015891 36 PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF--VPRIWVCTMSGQKTAESIVK 113 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~~v~~v~~~~~~~~~~~ 113 (398)
.|+.|+||++++++|...|...........+.|+|++|+|||++++.++++ ..... -..+++. .....+...++.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in-~~~~~~~~~~~~ 104 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYIN-CQIDRTRYAIFS 104 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEE-CCcCCCHHHHHH
Confidence 457899999999999999865323345566889999999999999999987 32222 2345555 555566778888
Q ss_pred HHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhC--CCcEEEecCCCCHH------HHHHHHhHcCCCCC--CEEEEEeC
Q 015891 114 RILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIG--KRYLIVLDDFEDME------VCKHLSKVLPRGYG--ERLIITSR 183 (398)
Q Consensus 114 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVLDdv~~~~------~~~~l~~~l~~~~g--s~IIiTTR 183 (398)
.++.++....... .....+.....+.+.+.. ++.+|||||++... .+..+........+ ..+|.++.
T Consensus 105 ~i~~~l~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~ 181 (394)
T PRK00411 105 EIARQLFGHPPPS---SGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISS 181 (394)
T ss_pred HHHHHhcCCCCCC---CCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEEC
Confidence 9999886522111 112345555666666653 46899999998542 23333333222233 33677777
Q ss_pred ChHHHHHhc------CCCceEEcCCCCChhHHHHHHHhhh
Q 015891 184 NEKLTTEMV------GEENLHQLQPLSDQESCWLIYRDSV 217 (398)
Q Consensus 184 ~~~v~~~~~------~~~~~~~l~~L~~~e~~~~l~~~~~ 217 (398)
+..+...+. -....+.++|++. ++...++...+
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~-~e~~~il~~r~ 220 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTA-DEIFDILKDRV 220 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCH-HHHHHHHHHHH
Confidence 654433221 0134678999998 66777766543
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.28 E-value=1.4e-10 Score=112.52 Aligned_cols=206 Identities=17% Similarity=0.173 Sum_probs=123.1
Q ss_pred CCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc------cceEEEEecCCcccH
Q 015891 35 KPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF------VPRIWVCTMSGQKTA 108 (398)
Q Consensus 35 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F------~~~~~v~~v~~~~~~ 108 (398)
.-|+.++||+++++.|...|...........+.|+|++|+|||++++.+++. ..... -..+|+. .....+.
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in-~~~~~~~ 88 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVN-CQILDTL 88 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEE-CCCCCCH
Confidence 3456899999999999999875223345567999999999999999999875 22111 1245565 5555667
Q ss_pred HHHHHHHHHHcC---CCCCCCCCcCCCchHHHHHHHHHHHh--CCCcEEEecCCCCH-----HHHHHHHhH--cCC--CC
Q 015891 109 ESIVKRILKRLG---VDDGTTNSFEGQGLAFLDYVLQQQLI--GKRYLIVLDDFEDM-----EVCKHLSKV--LPR--GY 174 (398)
Q Consensus 109 ~~~~~~il~~l~---~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~-----~~~~~l~~~--l~~--~~ 174 (398)
..++..++.++. ...+. ......+....+...+. +++.+||||+++.. +.+..+... ... +.
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~ 164 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPT----TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNA 164 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCC----CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCC
Confidence 788888888883 22111 11223334444555553 45789999999955 112222222 111 12
Q ss_pred CCEEEEEeCChHHHHHhc----CC--CceEEcCCCCChhHHHHHHHhhhCC--CCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891 175 GERLIITSRNEKLTTEMV----GE--ENLHQLQPLSDQESCWLIYRDSVRD--KDAQLKSQARKDLEEKLEKLQGQNEDA 246 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~----~~--~~~~~l~~L~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~I~~~c~GlPlai 246 (398)
...+|+++++......+. .. ...+.++|.+. ++...++...+.. .....++...+...+++....|.+..+
T Consensus 165 ~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~-~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 165 KVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDA-EELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred eEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCH-HHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 345666666554432221 11 25688999998 6677777764421 111233333345556677777887655
Q ss_pred hc
Q 015891 247 VN 248 (398)
Q Consensus 247 ~~ 248 (398)
..
T Consensus 244 l~ 245 (365)
T TIGR02928 244 ID 245 (365)
T ss_pred HH
Confidence 44
No 8
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.19 E-value=5e-10 Score=100.50 Aligned_cols=130 Identities=20% Similarity=0.262 Sum_probs=87.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCC-CCc----------cccceEEEEecCCcc------------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPD-VKT----------QFVPRIWVCTMSGQK------------------------ 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~-~~~----------~F~~~~~v~~v~~~~------------------------ 106 (398)
.-.+++|+||+|+|||||++.+..-.. .+. .+.....+.++.+..
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 347999999999999999999976310 000 011011222233210
Q ss_pred ------cHHHHHHHHHHHcCCCCCCCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891 107 ------TAESIVKRILKRLGVDDGTTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY 174 (398)
Q Consensus 107 ------~~~~~~~~il~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~ 174 (398)
...+...+.++.+++..-....+ +.++++.++..++++|..++-|++||++. |......+...+. ...
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 11356778888888876444433 48999999999999999999999999998 4433333333332 233
Q ss_pred CCEEEEEeCChHHHHHh
Q 015891 175 GERLIITSRNEKLTTEM 191 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~ 191 (398)
|+.||++|||-+.....
T Consensus 189 g~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 189 GKTVLMVTHDLGLVMAY 205 (254)
T ss_pred CCEEEEEeCCcHHhHhh
Confidence 99999999998766654
No 9
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.18 E-value=1.4e-09 Score=101.92 Aligned_cols=173 Identities=20% Similarity=0.330 Sum_probs=100.7
Q ss_pred CCcccchhhH---HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHH
Q 015891 38 ANVHGFANEE---LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKR 114 (398)
Q Consensus 38 ~~~vGR~~~~---~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~ 114 (398)
+++||.+.-+ .-|..++ ..+......+|||+|+||||||+.+.+. ....|.. ++-..+-.+-++.
T Consensus 24 de~vGQ~HLlg~~~~lrr~v----~~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f~~------~sAv~~gvkdlr~ 91 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAV----EAGHLHSMILWGPPGTGKTTLARLIAGT--TNAAFEA------LSAVTSGVKDLRE 91 (436)
T ss_pred HHhcChHhhhCCCchHHHHH----hcCCCceeEEECCCCCCHHHHHHHHHHh--hCCceEE------eccccccHHHHHH
Confidence 4456655443 3355556 3467888899999999999999999987 5555543 2222222222222
Q ss_pred HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC--CHHHHHHHHhHcCCCCCCEEEE--EeCChHHH--
Q 015891 115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPRGYGERLII--TSRNEKLT-- 188 (398)
Q Consensus 115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~gs~IIi--TTR~~~v~-- 188 (398)
+++. .-.....+++.+|++|+|+ +..+.+.|.+.. ..|.-|+| ||-++.+.
T Consensus 92 i~e~---------------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v--E~G~iilIGATTENPsF~ln 148 (436)
T COG2256 92 IIEE---------------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV--ENGTIILIGATTENPSFELN 148 (436)
T ss_pred HHHH---------------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhh--cCCeEEEEeccCCCCCeeec
Confidence 2221 0112234679999999999 556656544333 33444443 66666432
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchH----HHHHHHHHHHHhcCCCchhh
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKS----QARKDLEEKLEKLQGQNEDA 246 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~----~~~~~~~~I~~~c~GlPlai 246 (398)
..+.....+|+++||+. ++...++.++.-........ ...+....+++.++|--.+.
T Consensus 149 ~ALlSR~~vf~lk~L~~-~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 149 PALLSRARVFELKPLSS-EDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred HHHhhhhheeeeecCCH-HHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 22235578999999999 77888888754333222220 11224445566666655543
No 10
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.17 E-value=2.5e-10 Score=100.90 Aligned_cols=90 Identities=19% Similarity=0.329 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCCCCC--CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEE
Q 015891 109 ESIVKRILKRLGVDDGT--TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLII 180 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~~--~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIi 180 (398)
......+++.+++.+.. ..+.+.+++++++..++++|..+|-+|+.|+++ |.+.-+.+...+. ...|.+||+
T Consensus 119 ~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~ 198 (226)
T COG1136 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIM 198 (226)
T ss_pred HHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEE
Confidence 44566778888887432 335569999999999999999999999999999 4433333333332 345889999
Q ss_pred EeCChHHHHHhcCCCceEEcC
Q 015891 181 TSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 181 TTR~~~v~~~~~~~~~~~~l~ 201 (398)
.|||..++..+ ++++.+.
T Consensus 199 VTHd~~lA~~~---dr~i~l~ 216 (226)
T COG1136 199 VTHDPELAKYA---DRVIELK 216 (226)
T ss_pred EcCCHHHHHhC---CEEEEEe
Confidence 99999999875 4455553
No 11
>PF05729 NACHT: NACHT domain
Probab=99.17 E-value=2.7e-10 Score=97.29 Aligned_cols=144 Identities=22% Similarity=0.362 Sum_probs=86.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHcCCCCCcc----ccceEEEEecCCcccHH---HHHHHHHHHcCCCCCCCCCcCCCchHH
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQ----FVPRIWVCTMSGQKTAE---SIVKRILKRLGVDDGTTNSFEGQGLAF 136 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~~v~~v~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~~ 136 (398)
+++.|+|.+|+||||+++.++........ +...+|+. .+...... .+...+........ .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~--------~~~~~ 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESI--------APIEE 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccch--------hhhHH
Confidence 57899999999999999999866211111 34455555 44322211 23333333332211 11111
Q ss_pred HHHHHHHHHhCCCcEEEecCCCCHH----------HHHHHHhHcCC--CCCCEEEEEeCChHH--HHHhcCCCceEEcCC
Q 015891 137 LDYVLQQQLIGKRYLIVLDDFEDME----------VCKHLSKVLPR--GYGERLIITSRNEKL--TTEMVGEENLHQLQP 202 (398)
Q Consensus 137 ~~~~l~~~l~~k~~LlVLDdv~~~~----------~~~~l~~~l~~--~~gs~IIiTTR~~~v--~~~~~~~~~~~~l~~ 202 (398)
.........+++++|+|++++.. ..+.+...++. .++++++||+|.... ..........+++.+
T Consensus 72 --~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~ 149 (166)
T PF05729_consen 72 --LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEP 149 (166)
T ss_pred --HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECC
Confidence 11112224679999999998431 22344445543 468999999998766 332223446899999
Q ss_pred CCChhHHHHHHHhhhCC
Q 015891 203 LSDQESCWLIYRDSVRD 219 (398)
Q Consensus 203 L~~~e~~~~l~~~~~~~ 219 (398)
+++ ++...++++.|.+
T Consensus 150 ~~~-~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 150 FSE-EDIKQYLRKYFSN 165 (166)
T ss_pred CCH-HHHHHHHHHHhhc
Confidence 999 7788888887753
No 12
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.11 E-value=1.4e-09 Score=91.99 Aligned_cols=144 Identities=12% Similarity=0.163 Sum_probs=95.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc---c---c----------------ceEEEEe-----------c-----
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ---F---V----------------PRIWVCT-----------M----- 102 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~---F---~----------------~~~~v~~-----------v----- 102 (398)
+.-.++.|+|++|+|||||.+.+|..++-... | + +.+|.++ +
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~ 105 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLR 105 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhh
Confidence 45678999999999999999999876321110 0 0 0111110 0
Q ss_pred ---CCcccHHHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891 103 ---SGQKTAESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG 173 (398)
Q Consensus 103 ---~~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~ 173 (398)
.+.....+.....++..|+..... .+...+++++++..+++++-++|-+|+-|+++ |++....+...+. +.
T Consensus 106 v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr 185 (223)
T COG2884 106 VIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR 185 (223)
T ss_pred ccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh
Confidence 012234556677788888876533 34558999999999999999999999999998 4433333333443 45
Q ss_pred CCCEEEEEeCChHHHHHhcCCCceEEcCCCC
Q 015891 174 YGERLIITSRNEKLTTEMVGEENLHQLQPLS 204 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~ 204 (398)
.|++||++|||.++...+....-.++-+.|.
T Consensus 186 ~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~ 216 (223)
T COG2884 186 LGTTVLMATHDLELVNRMRHRVLALEDGRLV 216 (223)
T ss_pred cCcEEEEEeccHHHHHhccCcEEEEeCCEEE
Confidence 6999999999999988863333333333333
No 13
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.10 E-value=1e-09 Score=94.89 Aligned_cols=130 Identities=17% Similarity=0.220 Sum_probs=91.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEe------------------cCC------------------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCT------------------MSG------------------ 104 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~------------------v~~------------------ 104 (398)
..-.+++|+||+|+|||||.+.+..=+... .+.+|+.. |.+
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 345789999999999999999995432111 11222211 011
Q ss_pred -------cccHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891 105 -------QKTAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-- 171 (398)
Q Consensus 105 -------~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-- 171 (398)
.....+....+|..+|+.+.. ..+...+++++++..|++.|.-+|-+++||+++ |++....+...+.
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 122345567788888887743 345568999999999999999999999999999 4554444333332
Q ss_pred CCCCCEEEEEeCChHHHHHhcC
Q 015891 172 RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...|-+.|+.||+..++..+.+
T Consensus 183 A~eGmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 183 AEEGMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred HHcCCeEEEEechhHHHHHhhh
Confidence 3468899999999999998743
No 14
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.09 E-value=2.5e-09 Score=115.86 Aligned_cols=196 Identities=15% Similarity=0.169 Sum_probs=121.8
Q ss_pred CCCCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecC-CcccHHHH
Q 015891 33 KSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMS-GQKTAESI 111 (398)
Q Consensus 33 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~-~~~~~~~~ 111 (398)
++..+..+|-|+.-.+.+.. ....+++.|.||+|.||||++..+... . ..+.|++ +. ...+...+
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-------~~~~~~~~v~apaG~GKTtl~~~~~~~--~----~~~~w~~-l~~~d~~~~~f 74 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-------ANNYRLVLVTSPAGYGKTTLISQWAAG--K----NNLGWYS-LDESDNQPERF 74 (903)
T ss_pred CCCCccccCcchHHHHHHhc-------ccCCCeEEEECCCCCCHHHHHHHHHHh--C----CCeEEEe-cCcccCCHHHH
Confidence 33445678888866665542 246789999999999999999999864 2 2688998 75 44556666
Q ss_pred HHHHHHHcCCCCCCC-C-------CcCCCchHHHHHHHHHHHh--CCCcEEEecCCCC---HHHHHHHHhHcCC-CCCCE
Q 015891 112 VKRILKRLGVDDGTT-N-------SFEGQGLAFLDYVLQQQLI--GKRYLIVLDDFED---MEVCKHLSKVLPR-GYGER 177 (398)
Q Consensus 112 ~~~il~~l~~~~~~~-~-------~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~---~~~~~~l~~~l~~-~~gs~ 177 (398)
+..++..++...... . .............+...+. ..+.+|||||+.. ....+.+...++. .++.+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 677777664211110 0 0001122223333333333 5789999999984 3334455555553 34678
Q ss_pred EEEEeCChH-H-HHHhcCCCceEEcC----CCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891 178 LIITSRNEK-L-TTEMVGEENLHQLQ----PLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF 249 (398)
Q Consensus 178 IIiTTR~~~-v-~~~~~~~~~~~~l~----~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 249 (398)
+|||||... + ...+.......++. +|+. +++..|+....+.. .+ .+...+|.+.|+|.|+++..+
T Consensus 155 lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~-~e~~~ll~~~~~~~---~~---~~~~~~l~~~t~Gwp~~l~l~ 225 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDH-QEAQQFFDQRLSSP---IE---AAESSRLCDDVEGWATALQLI 225 (903)
T ss_pred EEEEeCCCCCCchHhHHhcCcceecCHHhCCCCH-HHHHHHHHhccCCC---CC---HHHHHHHHHHhCChHHHHHHH
Confidence 889999842 1 11111123345565 8998 66788887765542 11 236678999999999997653
No 15
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.08 E-value=7.2e-10 Score=104.81 Aligned_cols=174 Identities=17% Similarity=0.135 Sum_probs=98.7
Q ss_pred CCcccchhhHHHHHHHHhccC-CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRG-TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL 116 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~-~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il 116 (398)
.+|||++..++.|..++.... .......+.++|++|+|||+||+.+++. ....+. .+. ....... ..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~~---~~~-~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNLK---ITS-GPALEKP-GDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCEE---Eec-cchhcCc-hhHHHHH
Confidence 469999999999999886411 1234566889999999999999999987 332221 111 1111111 1111222
Q ss_pred HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHc--------------------CCCC
Q 015891 117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVL--------------------PRGY 174 (398)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l--------------------~~~~ 174 (398)
..+ ....+|++||++. ....+.+...+ +..+
T Consensus 77 ~~~---------------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 129 (305)
T TIGR00635 77 TNL---------------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPP 129 (305)
T ss_pred Hhc---------------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCC
Confidence 221 1234556666552 12222222111 1112
Q ss_pred CCEEEEEeCChHHHHHhcC-CCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891 175 GERLIITSRNEKLTTEMVG-EENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF 249 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~~-~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 249 (398)
.+-|..||+...+...+.. ....+.+++++. ++...++.+..+......++ +....|++.|+|.|..+..+
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~-~e~~~il~~~~~~~~~~~~~---~al~~ia~~~~G~pR~~~~l 201 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTV-EELAEIVSRSAGLLNVEIEP---EAALEIARRSRGTPRIANRL 201 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCH-HHHHHHHHHHHHHhCCCcCH---HHHHHHHHHhCCCcchHHHH
Confidence 3445566665443332211 135689999998 66788887755443333333 36678999999999765543
No 16
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.08 E-value=9.7e-10 Score=108.14 Aligned_cols=174 Identities=20% Similarity=0.327 Sum_probs=104.2
Q ss_pred CCcccchhhHHH---HHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHH
Q 015891 38 ANVHGFANEELH---LQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKR 114 (398)
Q Consensus 38 ~~~vGR~~~~~~---l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~ 114 (398)
+++||++..+.. |..++.. .....+.|+|++|+||||||+.+++. ....| +. ++........++.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~----~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~-l~a~~~~~~~ir~ 79 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA----GRLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EA-LSAVTSGVKDLRE 79 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc----CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EE-EecccccHHHHHH
Confidence 578999888766 8888754 45667889999999999999999987 33333 22 2211111111122
Q ss_pred HHHHcCCCCCCCCCcCCCchHHHHHHHHH-HHhCCCcEEEecCCCC--HHHHHHHHhHcCCCCCCEEEE--EeCChH--H
Q 015891 115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQ-QLIGKRYLIVLDDFED--MEVCKHLSKVLPRGYGERLII--TSRNEK--L 187 (398)
Q Consensus 115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~gs~IIi--TTR~~~--v 187 (398)
++.. ... ...+++.+|++||++. ..+.+.|...+.. +..++| ||.+.. +
T Consensus 80 ii~~----------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~~~l 135 (413)
T PRK13342 80 VIEE----------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEV 135 (413)
T ss_pred HHHH----------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChhhhc
Confidence 2211 111 1134678999999994 3555555555533 444444 344432 2
Q ss_pred HHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 188 TTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 188 ~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
...+......+.+.+++. ++...++.+.+............+..+.|++.|+|.+..+..
T Consensus 136 ~~aL~SR~~~~~~~~ls~-e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln 195 (413)
T PRK13342 136 NPALLSRAQVFELKPLSE-EDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALN 195 (413)
T ss_pred cHHHhccceeeEeCCCCH-HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHH
Confidence 222334457899999998 778888887654321110012234667788889999877654
No 17
>PRK06893 DNA replication initiation factor; Validated
Probab=99.07 E-value=2.6e-09 Score=96.55 Aligned_cols=149 Identities=16% Similarity=0.220 Sum_probs=89.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL 141 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l 141 (398)
....+.|+|++|+|||+|++++++. .......+.|+. +... ...... +
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~-~~~~---~~~~~~--------------------------~ 85 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIP-LSKS---QYFSPA--------------------------V 85 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEee-HHHh---hhhhHH--------------------------H
Confidence 3467899999999999999999987 333333456666 3210 000000 1
Q ss_pred HHHHhCCCcEEEecCCCC----HHHHHHHHhHcC--CCCCCEEEEE-eCC---------hHHHHHhcCCCceEEcCCCCC
Q 015891 142 QQQLIGKRYLIVLDDFED----MEVCKHLSKVLP--RGYGERLIIT-SRN---------EKLTTEMVGEENLHQLQPLSD 205 (398)
Q Consensus 142 ~~~l~~k~~LlVLDdv~~----~~~~~~l~~~l~--~~~gs~IIiT-TR~---------~~v~~~~~~~~~~~~l~~L~~ 205 (398)
.+.+ .+.-+|+|||++. ..|.+.+...+. ...++++|++ ++. .++.+.+ .....+++++++.
T Consensus 86 ~~~~-~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl-~~g~~~~l~~pd~ 163 (229)
T PRK06893 86 LENL-EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRL-TWGEIYQLNDLTD 163 (229)
T ss_pred Hhhc-ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHH-hcCCeeeCCCCCH
Confidence 1111 2346999999994 344444544444 2345666554 443 3555554 4467899999998
Q ss_pred hhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 206 QESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 206 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
+..+.++++.+...+...++ +...-|++++.|-...+..
T Consensus 164 -e~~~~iL~~~a~~~~l~l~~---~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 164 -EQKIIVLQRNAYQRGIELSD---EVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred -HHHHHHHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHH
Confidence 77888888744333333333 3566677777777666544
No 18
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.05 E-value=1.7e-09 Score=97.67 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=87.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc--------------eEEEEe---------------cC-----
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP--------------RIWVCT---------------MS----- 103 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~--------------~~~v~~---------------v~----- 103 (398)
..-.+++|.||+|+|||||.+.++.-..... .++. ..++.. .+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~ 105 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL 105 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccc
Confidence 3467999999999999999999965311000 0000 111110 00
Q ss_pred ---C--cccHHHHHHHHHHHcCCCCCCCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCCCH----HHHHHHHh--HcC
Q 015891 104 ---G--QKTAESIVKRILKRLGVDDGTTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----EVCKHLSK--VLP 171 (398)
Q Consensus 104 ---~--~~~~~~~~~~il~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----~~~~~l~~--~l~ 171 (398)
. .....+...+.++.++...-..+.. +.+++++++..+++.|.+++-+++||++.+. .+.+.+.- .+.
T Consensus 106 ~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~ 185 (258)
T COG1120 106 GLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN 185 (258)
T ss_pred ccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH
Confidence 0 1112235667788888776544433 3899999999999999999999999999943 33332221 222
Q ss_pred CCCCCEEEEEeCChHHHHHhcC
Q 015891 172 RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...|..||+++||.+.+..+++
T Consensus 186 ~~~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 186 REKGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred HhcCCEEEEEecCHHHHHHhCC
Confidence 4568899999999999888644
No 19
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.04 E-value=2.2e-09 Score=96.52 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=106.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEec--C--CcccHHHHHHHHHHHcCCCCC--CCCCcCCCch
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTM--S--GQKTAESIVKRILKRLGVDDG--TTNSFEGQGL 134 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v--~--~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~ 134 (398)
.+-.+++|+|.+|+|||||++.+..= ..... +.+++..- . ......+.+.+++..+|+... ...+.+.+++
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L--~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGL--EEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcC--cCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 35678999999999999999999885 33333 33333201 0 122344567788888887653 2334558999
Q ss_pred HHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEcCCCCChh
Q 015891 135 AFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQE 207 (398)
Q Consensus 135 ~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e 207 (398)
+.++..++++|.-++-++|.|++.+. ..++.+ .-+....|-..+++|||-.+...+++...++.++..-+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL-~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g 192 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLL-KDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIG 192 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHH-HHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEec
Confidence 99999999999999999999999843 222222 2233455889999999999999987777777777777655
Q ss_pred HHHHHHH
Q 015891 208 SCWLIYR 214 (398)
Q Consensus 208 ~~~~l~~ 214 (398)
....+|.
T Consensus 193 ~~~~~~~ 199 (268)
T COG4608 193 PTEEVFS 199 (268)
T ss_pred CHHHHhh
Confidence 5666665
No 20
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.04 E-value=3e-09 Score=106.38 Aligned_cols=135 Identities=23% Similarity=0.270 Sum_probs=93.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccc-----cceEEEEecCCcccH----------------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF-----VPRIWVCTMSGQKTA---------------------------- 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F-----~~~~~v~~v~~~~~~---------------------------- 108 (398)
.-..|||+|.+|+|||||.+.+... ..... +..+.+.++.+....
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~--~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~ 105 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGE--LEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAY 105 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC--CcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4567999999999999999999876 22221 112223333332111
Q ss_pred --------------------------HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---C
Q 015891 109 --------------------------ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---D 159 (398)
Q Consensus 109 --------------------------~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~ 159 (398)
..-...++..+++.....+-.+.+++++.+..|++.|-.++-+|+||+++ |
T Consensus 106 ~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD 185 (530)
T COG0488 106 ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185 (530)
T ss_pred HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccC
Confidence 12233455566666553334458999999999999999999999999999 4
Q ss_pred HHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 160 MEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 160 ~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
.+....|..++..-+| .+||+|||+.++..++. +++++.
T Consensus 186 ~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t--~I~~ld 224 (530)
T COG0488 186 LESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVAT--HILELD 224 (530)
T ss_pred HHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhh--heEEec
Confidence 4666667777765556 89999999999998754 344443
No 21
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.99 E-value=4e-09 Score=100.68 Aligned_cols=174 Identities=16% Similarity=0.134 Sum_probs=100.2
Q ss_pred CCCcccchhhHHHHHHHHhccC-CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHH
Q 015891 37 PANVHGFANEELHLQKLLSNRG-TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRI 115 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~~-~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~i 115 (398)
.++|+|++..++.+..++.... .......+.|+|++|+|||+||+.+++. ....+. ++. .. .......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~~---~~~-~~-~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNIR---ITS-GP-ALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCeE---EEe-cc-cccChHHHHHH
Confidence 3679999999999988886411 2344567899999999999999999987 332221 111 11 11111112222
Q ss_pred HHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH--HHHHHHHhHcC-------------------C-C
Q 015891 116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM--EVCKHLSKVLP-------------------R-G 173 (398)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~-------------------~-~ 173 (398)
+..+ .+..+|++||++.. ...+.+...+. . .
T Consensus 97 l~~l---------------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 97 LTNL---------------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred HHhc---------------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 2221 23446666666521 12222221110 0 1
Q ss_pred CCCEEEEEeCChHHHHHhcC-CCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 174 YGERLIITSRNEKLTTEMVG-EENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~~~~-~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
+.+-|..|++...+...+.. ....+++++++. ++...++.+.........++ +.+..|++.|+|.|..+..
T Consensus 150 ~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~-~e~~~il~~~~~~~~~~~~~---~~~~~ia~~~~G~pR~a~~ 221 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTV-EELEKIVKRSARILGVEIDE---EGALEIARRSRGTPRIANR 221 (328)
T ss_pred CceEEeecCCcccCCHHHHHhcCeeeecCCCCH-HHHHHHHHHHHHHcCCCcCH---HHHHHHHHHcCCCchHHHH
Confidence 13445566664433322211 135689999998 66888888765544443333 3678899999999976554
No 22
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.98 E-value=7.8e-09 Score=91.12 Aligned_cols=144 Identities=16% Similarity=0.271 Sum_probs=94.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCC-------------C-----ccccceE--EEEe---cCCcc-----------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-------------K-----TQFVPRI--WVCT---MSGQK----------- 106 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-------------~-----~~F~~~~--~v~~---v~~~~----------- 106 (398)
..-.+++|+|++|+|||||++.++.-.+- . ..|..+- |-+- +....
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~ 110 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR 110 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhc
Confidence 34568999999999999999999643110 0 0122111 1110 00001
Q ss_pred -----cHHHHHHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhHcCC
Q 015891 107 -----TAESIVKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKVLPR 172 (398)
Q Consensus 107 -----~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~l~~ 172 (398)
...+...++++++++... ...+.+.++++.++..+.++|.-++-+||+|++.+. ..++.|... ..
T Consensus 111 ~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l-~~ 189 (252)
T COG1124 111 PHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLEL-KK 189 (252)
T ss_pred cCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHH-HH
Confidence 112225678888888764 333455899999999999999999999999999843 333444332 24
Q ss_pred CCCCEEEEEeCChHHHHHhcCCCceEEcCCCCC
Q 015891 173 GYGERLIITSRNEKLTTEMVGEENLHQLQPLSD 205 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~ 205 (398)
..+-.+|++|||..++..+|+...++.-+.+.+
T Consensus 190 ~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE 222 (252)
T COG1124 190 ERGLTYLFISHDLALVEHMCDRIAVMDNGQIVE 222 (252)
T ss_pred hcCceEEEEeCcHHHHHHHhhheeeeeCCeEEE
Confidence 567899999999999988876654544444443
No 23
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=1.5e-07 Score=96.06 Aligned_cols=195 Identities=15% Similarity=0.147 Sum_probs=110.8
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
+++||.+..++.|..++.. ..-...+.++|+.|+||||+|+.+.+...-...+.. ..+..-.....+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~---gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~--------~PCG~C~sCr~I~~ 84 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDG---GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS--------QPCGVCRACREIDE 84 (830)
T ss_pred HHHcCcHHHHHHHHHHHhc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC--------CCCcccHHHHHHhc
Confidence 6789999999999999864 223556789999999999999999876221111110 00000000111110
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHH----hCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCChH-HHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL----IGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNEK-LTT 189 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~~ 189 (398)
.-..+.......+..+.+..+..+.... ..+..++|||+++. ....+.|...+. ...+.++|+||++.+ +..
T Consensus 85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV 164 (830)
T ss_pred CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccc
Confidence 0000000000001122333333333221 23456999999994 455555655664 234677777777653 444
Q ss_pred HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
.+......|.+++++. +.....+.+.+..++...++ +.+..|++.++|-.....
T Consensus 165 TIrSRCq~f~Fk~Ls~-eeIv~~L~~Il~~EgI~id~---eAL~lIA~~A~GsmRdAL 218 (830)
T PRK07003 165 TVLSRCLQFNLKQMPA-GHIVSHLERILGEERIAFEP---QALRLLARAAQGSMRDAL 218 (830)
T ss_pred hhhhheEEEecCCcCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 4445578899999999 66777777766554433322 366778888888765433
No 24
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.97 E-value=1.4e-08 Score=87.56 Aligned_cols=127 Identities=18% Similarity=0.220 Sum_probs=84.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCC-C--Ccc---cc--ceEEEEecCCcccHHHHHHHHHHHcCCCCC--CCCCcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD-V--KTQ---FV--PRIWVCTMSGQKTAESIVKRILKRLGVDDG--TTNSFE 130 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~-~--~~~---F~--~~~~v~~v~~~~~~~~~~~~il~~l~~~~~--~~~~~~ 130 (398)
..-.+++|+|++|+|||||.+.+..+.. + ... |. ...|+ .+ .+.+..+++... ......
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~---~q--------~~~l~~~~L~~~~~~~~~~~ 87 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI---DQ--------LQFLIDVGLGYLTLGQKLST 87 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE---hH--------HHHHHHcCCCccccCCCcCc
Confidence 3457899999999999999999864210 0 000 10 01121 11 467778887542 333445
Q ss_pred CCchHHHHHHHHHHHhCC--CcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 131 GQGLAFLDYVLQQQLIGK--RYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 131 ~~~~~~~~~~l~~~l~~k--~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
.+.+++++..+.+.+..+ +-+++||++. |....+.+...+. ...|..||++||+.+.... .++++.+.
T Consensus 88 LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~---~d~i~~l~ 162 (176)
T cd03238 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS---ADWIIDFG 162 (176)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh---CCEEEEEC
Confidence 788999999999999999 9999999998 4444444444443 2257889999999987643 34556553
No 25
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.94 E-value=2e-08 Score=89.20 Aligned_cols=138 Identities=16% Similarity=0.181 Sum_probs=91.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCC------------CCc-------ccc---ceEEEEecCCc------------c
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD------------VKT-------QFV---PRIWVCTMSGQ------------K 106 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~------------~~~-------~F~---~~~~v~~v~~~------------~ 106 (398)
..-.+|+|+|++|+|||||.+.++.=.. +.. -|. -.-|.+ +.++ .
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~T-v~~NV~l~l~~~~~~~~ 105 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLT-VLDNVALGLELRGKSKA 105 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhh-HHhhheehhhccccchH
Confidence 3567899999999999999999964211 000 011 112333 2221 1
Q ss_pred cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH------HHHHHHHhHcCCCCCCEEE
Q 015891 107 TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM------EVCKHLSKVLPRGYGERLI 179 (398)
Q Consensus 107 ~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~------~~~~~l~~~l~~~~gs~II 179 (398)
........++..+|+..- ...+...+++.+++..+++.|..++-+|++|++... ..++.....++...+.+|+
T Consensus 106 e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvl 185 (248)
T COG1116 106 EARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185 (248)
T ss_pred hHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEE
Confidence 123467788888888763 344566899999999999999999999999999832 1111111223345678999
Q ss_pred EEeCChHHHHHhcCCCceEEcC
Q 015891 180 ITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 180 iTTR~~~v~~~~~~~~~~~~l~ 201 (398)
+.|||-+-+..+. ++++-+.
T Consensus 186 lVTHdi~EAv~Ls--dRivvl~ 205 (248)
T COG1116 186 LVTHDVDEAVYLA--DRVVVLS 205 (248)
T ss_pred EEeCCHHHHHhhh--CEEEEec
Confidence 9999988777764 3444443
No 26
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.92 E-value=2.2e-08 Score=90.31 Aligned_cols=170 Identities=23% Similarity=0.237 Sum_probs=99.3
Q ss_pred CCccc--chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHH
Q 015891 38 ANVHG--FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRI 115 (398)
Q Consensus 38 ~~~vG--R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~i 115 (398)
++|++ .+..++.+..++. ......+.|+|++|+|||+||+.+++. ........+++. +..-.. ....+
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~----~~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~-~~~~~~---~~~~~ 84 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAA----GKGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLP-LAELAQ---ADPEV 84 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHh----cCCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEe-HHHHHH---hHHHH
Confidence 45653 4456777777763 245778999999999999999999876 222223344554 221110 00011
Q ss_pred HHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeCChH---
Q 015891 116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSRNEK--- 186 (398)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR~~~--- 186 (398)
+ ..+ .+.-+||+||++.. .+.+.+...+. ...+..+|+||+...
T Consensus 85 ~--------------------------~~~-~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~ 137 (226)
T TIGR03420 85 L--------------------------EGL-EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQL 137 (226)
T ss_pred H--------------------------hhc-ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHC
Confidence 1 111 22358999999843 33455554443 123457888887432
Q ss_pred ------HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891 187 ------LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF 249 (398)
Q Consensus 187 ------v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 249 (398)
+...+ .....++++|++. ++...++.+.........++ +..+.|++.+.|.+..+..+
T Consensus 138 ~~~~~~L~~r~-~~~~~i~l~~l~~-~e~~~~l~~~~~~~~~~~~~---~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 138 PLRLPDLRTRL-AWGLVFQLPPLSD-EEKIAALQSRAARRGLQLPD---EVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred CcccHHHHHHH-hcCeeEecCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHHH
Confidence 22222 2246799999999 66677776643322222223 35566777788888776553
No 27
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.90 E-value=2.8e-08 Score=86.44 Aligned_cols=126 Identities=18% Similarity=0.230 Sum_probs=85.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEe--cCCcccHH------HHHHHHHHHcCCCCCC-CCCcCCC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCT--MSGQKTAE------SIVKRILKRLGVDDGT-TNSFEGQ 132 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~--v~~~~~~~------~~~~~il~~l~~~~~~-~~~~~~~ 132 (398)
.-.+++|.|++|+|||||++.++.. . ....+.+++.. +.. .+.. ..+.++++.+++.... ......+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 4568999999999999999999886 2 23344444431 111 1111 1222366777765422 2233478
Q ss_pred chHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC-CCEEEEEeCChHHHHHh
Q 015891 133 GLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY-GERLIITSRNEKLTTEM 191 (398)
Q Consensus 133 ~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~-gs~IIiTTR~~~v~~~~ 191 (398)
.++.++..+.+.+...+-++++|++. |....+.+...+. ... +..||++||+......+
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~ 164 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY 164 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 99999999999999999999999999 4444445544443 122 68999999998876554
No 28
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.89 E-value=4.7e-08 Score=93.71 Aligned_cols=197 Identities=15% Similarity=0.152 Sum_probs=107.6
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc-eEEEEecCCccc-HHHHHH--
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP-RIWVCTMSGQKT-AESIVK-- 113 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~~v~~v~~~~~-~~~~~~-- 113 (398)
++++|++..++.+..++.. +....+.++|++|+||||+|+.+++... ...+.. .+.++ ++.-.. ....+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~----~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~-~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS----PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFN-VADFFDQGKKYLVED 88 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC----CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEec-hhhhhhcchhhhhcC
Confidence 5789999999999998854 3445688999999999999999987621 111121 22333 221100 000000
Q ss_pred -HHHHHcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCC
Q 015891 114 -RILKRLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRN 184 (398)
Q Consensus 114 -~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~ 184 (398)
.....++.. ..............+.... ...+.+||+||++. ....+.|...+. ....+++|+|+..
T Consensus 89 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 89 PRFAHFLGTD----KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred cchhhhhhhh----hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 000000000 0000011122222222221 13456999999983 344445555553 3345778877754
Q ss_pred h-HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 185 E-KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 185 ~-~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
. .+...+......+++.|++. ++...++.+.+...+...++ +..+.+++.++|.+..+..
T Consensus 165 ~~~~~~~L~sr~~~v~~~~~~~-~~~~~~l~~~~~~~~~~~~~---~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 165 PSKLIPPIRSRCLPLFFRAPTD-DELVDVLESIAEAEGVDYDD---DGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhCchhhcCCceEEEecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 3 33333334456788999998 66777777655444433333 3677788888887766543
No 29
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=3.4e-08 Score=102.52 Aligned_cols=196 Identities=15% Similarity=0.175 Sum_probs=111.0
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc-eEEEEecCCcccHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP-RIWVCTMSGQKTAESIVKRIL 116 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~~v~~v~~~~~~~~~~~~il 116 (398)
.++||.+..++.|..++.. ..-...+.++|+.|+||||+|+.+++...-...... .|..+ ... ..+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~---~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C-----~sC----~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQ---QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC-----SSC----VEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc-----hHH----HHHh
Confidence 6799999999999999864 123455689999999999999999887221111100 00000 000 0000
Q ss_pred HHcCCCCCCCCCcCCCchHHHHHHHHH----HHhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCC-hHHH
Q 015891 117 KRLGVDDGTTNSFEGQGLAFLDYVLQQ----QLIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRN-EKLT 188 (398)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~-~~v~ 188 (398)
......-......+....+..+..+.. -..++..++|||+++ +....+.|...+-. ....++|++|.+ ..+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 000000000000000122222222211 113567799999999 45666676666642 235566655544 4455
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF 249 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 249 (398)
..+......|++++|+. ++...++.+.+...+.... .+.+..|++.++|.|..+..+
T Consensus 164 ~TIlSRCq~f~fkpLs~-eEI~~~L~~il~~EgI~~e---deAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQ-DEIGTQLNHILTQEQLPFE---AEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHHHHhheEEeCCCCCH-HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 44445568899999999 6677777775544332222 236677899999999866654
No 30
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.88 E-value=2.8e-08 Score=88.83 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=86.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc---------eEEEEe-----------cCC------c-------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP---------RIWVCT-----------MSG------Q------- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~---------~~~v~~-----------v~~------~------- 105 (398)
.-.+++|+|++|+|||||++.+...... .. .|+. ..++.. +.+ .
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFR 103 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhcccccccccc
Confidence 4568999999999999999999765211 00 0110 111110 000 0
Q ss_pred ---ccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCC
Q 015891 106 ---KTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGE 176 (398)
Q Consensus 106 ---~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs 176 (398)
.........+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 183 (213)
T cd03235 104 RLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM 183 (213)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 0012234556677776532 2233458999999999999999999999999999 4444444444443 12578
Q ss_pred EEEEEeCChHHHHHhcCCCceEEc
Q 015891 177 RLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 177 ~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
.||++||+...+..++ ++++.+
T Consensus 184 tvi~~sH~~~~~~~~~--d~i~~l 205 (213)
T cd03235 184 TILVVTHDLGLVLEYF--DRVLLL 205 (213)
T ss_pred EEEEEeCCHHHHHHhc--CEEEEE
Confidence 8999999988776643 344444
No 31
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.88 E-value=5.5e-08 Score=81.01 Aligned_cols=130 Identities=19% Similarity=0.306 Sum_probs=89.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCC-----------------------CCccccceEEEE-----ecC----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPD-----------------------VKTQFVPRIWVC-----TMS---------- 103 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~-----------------------~~~~F~~~~~v~-----~v~---------- 103 (398)
.-..++|+|++|+|||||...++.-.+ .+..--..+|.+ ++.
T Consensus 35 ~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPle 114 (228)
T COG4181 35 RGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLE 114 (228)
T ss_pred CCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhh
Confidence 345789999999999999988843110 011100112221 111
Q ss_pred --C--cccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CH---HHHHHHHhHcCC
Q 015891 104 --G--QKTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DM---EVCKHLSKVLPR 172 (398)
Q Consensus 104 --~--~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~---~~~~~l~~~l~~ 172 (398)
. ..+.......++.++|+... ...+...+++++++..+.+.+...|-+++-|+++ |. +..-.+...+..
T Consensus 115 L~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr 194 (228)
T COG4181 115 LRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194 (228)
T ss_pred hcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh
Confidence 1 23455567888999988764 2334558999999999999999999999999998 33 222333334456
Q ss_pred CCCCEEEEEeCChHHHHHh
Q 015891 173 GYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~ 191 (398)
..|++.++.|||+.++..|
T Consensus 195 e~G~TlVlVTHD~~LA~Rc 213 (228)
T COG4181 195 ERGTTLVLVTHDPQLAARC 213 (228)
T ss_pred hcCceEEEEeCCHHHHHhh
Confidence 6799999999999999987
No 32
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=6.7e-08 Score=93.47 Aligned_cols=195 Identities=16% Similarity=0.161 Sum_probs=106.4
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
++++|.+..++.+...+.. ..-...+.++|+.|+||||+|+.+++...-...+.. .+...-....++..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~---~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~--------~pc~~c~~c~~~~~ 84 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSL---GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS--------NPCRKCIICKEIEK 84 (363)
T ss_pred hhccChHHHHHHHHHHHHc---CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC--------CCCCCCHHHHHHhc
Confidence 6789999999999998864 223457899999999999999999876211111100 00000000011111
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCCCH--HHHHHHHhHcC-CCCCCEEEEEeCCh-HHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFEDM--EVCKHLSKVLP-RGYGERLIITSRNE-KLT 188 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~--~~~~~l~~~l~-~~~gs~IIiTTR~~-~v~ 188 (398)
.....-...........+..+. +...+ .++..++|+||++.. ...+.+...+. .....++|++|.+. .+.
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred CCCCceEEecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 0000000000000011222222 11221 234569999999943 34455555554 23455667666553 444
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
..+.+....+++.|++. ++....+.+.+...+...++ +.+..|++.++|.|..+..
T Consensus 164 ~tI~SRc~~~~~~~l~~-~el~~~L~~~~~~~g~~i~~---~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 164 KTILSRCLQFKLKIISE-EKIFNFLKYILIKESIDTDE---YALKLIAYHAHGSMRDALN 219 (363)
T ss_pred HHHHhhceEEeCCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 44445567899999998 55666666644333322222 3667788889998876543
No 33
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.86 E-value=3.5e-08 Score=93.17 Aligned_cols=130 Identities=18% Similarity=0.185 Sum_probs=83.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE----------------EEecCCc------ccH-----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW----------------VCTMSGQ------KTA----------- 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~----------------v~~v~~~------~~~----------- 108 (398)
.-.+++|.|++|+|||||++.+..-..- ..+.++ +.++.+. .+.
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p---~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~ 108 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTHP---DAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF 108 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc
Confidence 3468999999999999999999764111 011111 1111111 011
Q ss_pred -------HHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCC
Q 015891 109 -------ESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYG 175 (398)
Q Consensus 109 -------~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~g 175 (398)
......+++.+++..... .....+.+++++..+.+++..++-+++||++. |......+...+. ...|
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g 188 (306)
T PRK13537 109 GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARG 188 (306)
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 122345566666654222 22348899999999999999999999999999 4444444433332 2347
Q ss_pred CEEEEEeCChHHHHHhcCC
Q 015891 176 ERLIITSRNEKLTTEMVGE 194 (398)
Q Consensus 176 s~IIiTTR~~~v~~~~~~~ 194 (398)
.+||+|||+.+.+..+++.
T Consensus 189 ~till~sH~l~e~~~~~d~ 207 (306)
T PRK13537 189 KTILLTTHFMEEAERLCDR 207 (306)
T ss_pred CEEEEECCCHHHHHHhCCE
Confidence 8999999999877765443
No 34
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.86 E-value=2.6e-08 Score=99.68 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=96.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCC-CCccc--cceEEEEecCCc-----------------c-c-HHHHHHHHHHH
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD-VKTQF--VPRIWVCTMSGQ-----------------K-T-AESIVKRILKR 118 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~-~~~~F--~~~~~v~~v~~~-----------------~-~-~~~~~~~il~~ 118 (398)
..-..|+|+|++|+|||||.+.+..... ..... ...+-+.++.+. . . ....++..+..
T Consensus 346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~ 425 (530)
T COG0488 346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGR 425 (530)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHH
Confidence 3456799999999999999999965411 11111 111112111111 1 1 14567778888
Q ss_pred cCCCCCCCC--CcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891 119 LGVDDGTTN--SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 119 l~~~~~~~~--~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
+++...... ....+++++.+..+.+.+..++-+||||+++ |.+..+.|...+..- .+.||++|||+.+...++
T Consensus 426 f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gtvl~VSHDr~Fl~~va- 503 (530)
T COG0488 426 FGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGTVLLVSHDRYFLDRVA- 503 (530)
T ss_pred cCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHhhc-
Confidence 888765432 2238999999999999999999999999999 557777777777533 456999999999998863
Q ss_pred CCceEEcCC
Q 015891 194 EENLHQLQP 202 (398)
Q Consensus 194 ~~~~~~l~~ 202 (398)
.+++.+.+
T Consensus 504 -~~i~~~~~ 511 (530)
T COG0488 504 -TRIWLVED 511 (530)
T ss_pred -ceEEEEcC
Confidence 56777765
No 35
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.86 E-value=5.2e-08 Score=87.31 Aligned_cols=137 Identities=17% Similarity=0.244 Sum_probs=85.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc-----------------ceEEEEec---CCccc-----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV-----------------PRIWVCTM---SGQKT----------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~-----------------~~~~v~~v---~~~~~----------- 107 (398)
.-.+++|+|++|+|||||++.++.-... .. .|+ ...++..- ....+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 107 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI 107 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence 4568999999999999999999764210 00 010 01111100 00000
Q ss_pred -------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891 108 -------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY 174 (398)
Q Consensus 108 -------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~ 174 (398)
......++++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 187 (216)
T TIGR00960 108 IGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR 187 (216)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC
Confidence 11233456677777542 2233458999999999999999999999999999 4444444444433 234
Q ss_pred CCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 175 GERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
+..||++||+.+....++ ++++.+
T Consensus 188 ~~tii~vsH~~~~~~~~~--d~i~~l 211 (216)
T TIGR00960 188 GTTVLVATHDINLVETYR--HRTLTL 211 (216)
T ss_pred CCEEEEEeCCHHHHHHhC--CEEEEE
Confidence 788999999988776543 344444
No 36
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.86 E-value=4.1e-08 Score=84.77 Aligned_cols=117 Identities=13% Similarity=0.153 Sum_probs=77.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL 141 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l 141 (398)
.-.+++|.|++|+|||||++.+..- . ....+.+++.... ++.... ....+.+++++..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl--~-~p~~G~i~~~g~~---------------i~~~~q---~~~LSgGq~qrv~l 82 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ--L-IPNGDNDEWDGIT---------------PVYKPQ---YIDLSGGELQRVAI 82 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC--C-CCCCcEEEECCEE---------------EEEEcc---cCCCCHHHHHHHHH
Confidence 4568999999999999999999875 2 2223333332100 000000 00158899999999
Q ss_pred HHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC-CCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 142 QQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY-GERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 142 ~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~-gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
.+.+..++-+++||++. |....+.+...+. ... +..||++||+......++ ++++.+.
T Consensus 83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~--d~i~~l~ 146 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS--DRIHVFE 146 (177)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC--CEEEEEc
Confidence 99999999999999998 4444444444432 122 478999999998777643 3455554
No 37
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.85 E-value=9.9e-08 Score=86.02 Aligned_cols=89 Identities=15% Similarity=0.238 Sum_probs=62.4
Q ss_pred HHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
...+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+
T Consensus 129 ~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~ 208 (224)
T TIGR02324 129 ARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208 (224)
T ss_pred HHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3456677776542 2334458999999999999999999999999998 4444444444443 2347899999999
Q ss_pred hHHHHHhcCCCceEEcCC
Q 015891 185 EKLTTEMVGEENLHQLQP 202 (398)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~ 202 (398)
...+..++ ++++.+.|
T Consensus 209 ~~~~~~~~--d~i~~~~~ 224 (224)
T TIGR02324 209 EEVRELVA--DRVMDVTP 224 (224)
T ss_pred HHHHHHhc--ceeEecCC
Confidence 88776543 45666543
No 38
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=3.7e-08 Score=87.86 Aligned_cols=130 Identities=19% Similarity=0.186 Sum_probs=82.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc----------ceEEEEe---cCCccc------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV----------PRIWVCT---MSGQKT------------------ 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~----------~~~~v~~---v~~~~~------------------ 107 (398)
.-.+++|+|++|+|||||++.+...... ... ++ .+.++.. +....+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 104 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE 104 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHH
Confidence 4568999999999999999999865211 000 10 0111110 000001
Q ss_pred HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEE
Q 015891 108 AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIIT 181 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiT 181 (398)
......++++.+++.... ......+.+++++..+.+.+..++-++++|++. |....+.+...+. ...+..||++
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~ 184 (210)
T cd03269 105 ARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILS 184 (210)
T ss_pred HHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 112234566667765321 223347899999999999999999999999999 4444444444443 2347899999
Q ss_pred eCChHHHHHh
Q 015891 182 SRNEKLTTEM 191 (398)
Q Consensus 182 TR~~~v~~~~ 191 (398)
||+...+..+
T Consensus 185 sH~~~~~~~~ 194 (210)
T cd03269 185 THQMELVEEL 194 (210)
T ss_pred CCCHHHHHHh
Confidence 9998877654
No 39
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.85 E-value=3.7e-08 Score=92.94 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=84.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc----------eEEEEecCCc------ccH--------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP----------RIWVCTMSGQ------KTA-------------- 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~----------~~~v~~v~~~------~~~-------------- 108 (398)
.-.+++|+|++|+|||||++.+..-.... . .++. ...+.++.+. .+.
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 97 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP 97 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 45689999999999999999997642110 0 0100 0001111111 011
Q ss_pred ----HHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEE
Q 015891 109 ----ESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERL 178 (398)
Q Consensus 109 ----~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~I 178 (398)
......+++.+++.... ......+.+++++..+.+++..++-+|+||++. |....+.+...+. ...|..|
T Consensus 98 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tv 177 (302)
T TIGR01188 98 KDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTI 177 (302)
T ss_pred HHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 12244567777775432 223348899999999999999999999999999 4444444444432 2347899
Q ss_pred EEEeCChHHHHHhcC
Q 015891 179 IITSRNEKLTTEMVG 193 (398)
Q Consensus 179 IiTTR~~~v~~~~~~ 193 (398)
|+|||+.+.+..+++
T Consensus 178 i~~sH~~~~~~~~~d 192 (302)
T TIGR01188 178 LLTTHYMEEADKLCD 192 (302)
T ss_pred EEECCCHHHHHHhCC
Confidence 999999987776544
No 40
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.84 E-value=6.3e-08 Score=86.05 Aligned_cols=137 Identities=14% Similarity=0.201 Sum_probs=86.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccce--------EEEEecCCcc-------c--------------HH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPR--------IWVCTMSGQK-------T--------------AE 109 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~--------~~v~~v~~~~-------~--------------~~ 109 (398)
.-.+++|.|++|+|||||++.++.-... .. .|+.. .-+.++.+.. + ..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~ 104 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGN 104 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccH
Confidence 4568999999999999999999764210 00 01100 0011111110 0 01
Q ss_pred HHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891 110 SIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR 183 (398)
Q Consensus 110 ~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR 183 (398)
....++++.+++.... ......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH 184 (205)
T cd03226 105 EQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITH 184 (205)
T ss_pred HHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 2345667777775422 223348899999999999999999999999999 4554455544443 234778999999
Q ss_pred ChHHHHHhcCCCceEEc
Q 015891 184 NEKLTTEMVGEENLHQL 200 (398)
Q Consensus 184 ~~~v~~~~~~~~~~~~l 200 (398)
+...+..++ ++++.+
T Consensus 185 ~~~~~~~~~--d~i~~l 199 (205)
T cd03226 185 DYEFLAKVC--DRVLLL 199 (205)
T ss_pred CHHHHHHhC--CEEEEE
Confidence 988776543 344444
No 41
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.84 E-value=1e-08 Score=95.91 Aligned_cols=130 Identities=19% Similarity=0.247 Sum_probs=87.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE----------------EEecCCc--------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW----------------VCTMSGQ-------------------- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~----------------v~~v~~~-------------------- 105 (398)
.-.++++.|++|+|||||.+.+..-. .. ..+.+. +.++.+.
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~--~p-~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~ 106 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLL--KP-TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY 106 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc--CC-CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHh
Confidence 45799999999999999999997652 11 111111 1111111
Q ss_pred --c--cHHHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCC
Q 015891 106 --K--TAESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYG 175 (398)
Q Consensus 106 --~--~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~g 175 (398)
. ...+....+++.+++..... .....+.+++++..+...|..++-++|||++. |+.....+...+. ...|
T Consensus 107 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g 186 (293)
T COG1131 107 GLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEG 186 (293)
T ss_pred CCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 0 11345667888888886322 22347899999999999999999999999999 5544444444443 2233
Q ss_pred -CEEEEEeCChHHHHHhcCC
Q 015891 176 -ERLIITSRNEKLTTEMVGE 194 (398)
Q Consensus 176 -s~IIiTTR~~~v~~~~~~~ 194 (398)
..||+|||....+..+++.
T Consensus 187 ~~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 187 GVTILLSTHILEEAEELCDR 206 (293)
T ss_pred CcEEEEeCCcHHHHHHhCCE
Confidence 7999999998877776443
No 42
>PLN03025 replication factor C subunit; Provisional
Probab=98.84 E-value=4.8e-08 Score=92.89 Aligned_cols=182 Identities=16% Similarity=0.223 Sum_probs=105.0
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccce-EEEEecCCcccHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPR-IWVCTMSGQKTAESIVKRIL 116 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~-~~v~~v~~~~~~~~~~~~il 116 (398)
++++|.+..++.|..++.. +....+.++|++|+||||+|+.+++... ...|... +-+. .+..... ..+++++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~----~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln-~sd~~~~-~~vr~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD----GNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELN-ASDDRGI-DVVRNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeec-ccccccH-HHHHHHH
Confidence 5688999989999888754 3445578999999999999999987621 1122211 1111 1111111 1222222
Q ss_pred HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCCh-HHHHHhc
Q 015891 117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNE-KLTTEMV 192 (398)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~-~v~~~~~ 192 (398)
..+...... ...++..++|+||++. ....+.|...+. ....+++|+++... .+...+.
T Consensus 86 ~~~~~~~~~------------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 86 KMFAQKKVT------------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred HHHHhcccc------------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHH
Confidence 211100000 0013467999999994 344455555554 23456777766543 3333333
Q ss_pred CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 193 GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 193 ~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
.....+++++++. ++....+.+.+...+...++ +....|++.++|-...+..
T Consensus 148 SRc~~i~f~~l~~-~~l~~~L~~i~~~egi~i~~---~~l~~i~~~~~gDlR~aln 199 (319)
T PLN03025 148 SRCAIVRFSRLSD-QEILGRLMKVVEAEKVPYVP---EGLEAIIFTADGDMRQALN 199 (319)
T ss_pred HhhhcccCCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 3456899999998 66777777655444443333 3667788888887765543
No 43
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=4.6e-08 Score=98.48 Aligned_cols=202 Identities=14% Similarity=0.131 Sum_probs=112.1
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
+++||.+..++.|.+++.. ..-...+.++|+.|+||||+|+.+.+...-... +..--+ ....+..-.....|..
T Consensus 16 ddVIGQe~vv~~L~~al~~---gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~--~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQ---QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI--TAQPCGQCRACTEIDA 89 (700)
T ss_pred HHHcCcHHHHHHHHHHHHh---CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC--CCCCCcccHHHHHHHc
Confidence 5789999999999999964 233567799999999999999999876211000 000000 0000000000111110
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHH----hCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeC-ChHHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL----IGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSR-NEKLTT 189 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR-~~~v~~ 189 (398)
.-..+.......+..+.++.+..+.... .++..++|+|+++ +....+.|...+.. ..++++|++|. ...+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 0000000000001123444444333322 3456799999999 44566666666642 23556555554 455555
Q ss_pred HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891 190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF 249 (398)
Q Consensus 190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 249 (398)
.+......|.+.+++. ++....+.+.....+...++ +.+..|++.++|.+.....+
T Consensus 170 TIrSRCq~f~f~~ls~-eei~~~L~~Il~~Egi~~d~---eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPP-GHIVSHLDAILGEEGIAHEV---NALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCCh-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHHH
Confidence 5555567899999998 66766666655433332222 25677889999999765543
No 44
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=5.7e-08 Score=95.27 Aligned_cols=194 Identities=15% Similarity=0.088 Sum_probs=109.9
Q ss_pred CCcccchhhHHHHHHHHhccCCCCC-eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQ-FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL 116 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~-~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il 116 (398)
+++||.+..+..|..++.. ++ ...+.++|+.|+||||+|+.+++. +........-. ........ .+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~----~ri~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~~~~p--Cg~C~sC~----~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKS----GKIGHAYIFFGPRGVGKTTIARILAKR--LNCENPIGNEP--CNECTSCL----EIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHh--cCcccccCccc--cCCCcHHH----HHH
Confidence 6789999999999999865 33 346899999999999999999887 22211000000 01111111 111
Q ss_pred HHcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCCC-CCCEEE-EEeCChHHH
Q 015891 117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPRG-YGERLI-ITSRNEKLT 188 (398)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~-~gs~II-iTTR~~~v~ 188 (398)
................+.+..+...... ..++..++|+|+++ +.+..+.|...+... ....+| .||....+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 1111000000000112233322222111 23456799999999 456666666666432 244444 444445555
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
..+......|.+.+++. ++....+.+.....+.... .+.+..|++.++|-+....
T Consensus 166 ~TI~SRCq~~~f~~ls~-~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 166 ETILSRCQDFIFKKVPL-SVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred HHHHhhhheeeecCCCH-HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHHHH
Confidence 55555567899999998 6677777765544333222 2367788899999886543
No 45
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.84 E-value=2e-08 Score=85.91 Aligned_cols=118 Identities=17% Similarity=0.101 Sum_probs=77.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCC-cccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSG-QKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV 140 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~ 140 (398)
.-.+++|.|++|+|||||++.++.. .....+.+++....- ..+.... ....++.- ...+.++.++..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~------~qLS~G~~qrl~ 92 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDA---RRAGIAMV------YQLSVGERQMVE 92 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHH---HhcCeEEE------EecCHHHHHHHH
Confidence 4568999999999999999999886 233445555541110 1111111 11111111 116889999999
Q ss_pred HHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHh
Q 015891 141 LQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 141 l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~ 191 (398)
+.+.+..++-++++|++. |....+.+...+. ...+..||++||+...+..+
T Consensus 93 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 148 (163)
T cd03216 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI 148 (163)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 999999999999999998 4444444444443 23478999999998866554
No 46
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.84 E-value=1.5e-08 Score=83.08 Aligned_cols=114 Identities=24% Similarity=0.362 Sum_probs=78.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-----ccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-----FVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAF 136 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-----F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 136 (398)
+.+.+.|+|++|+|||++++.+.+. .... -..++|+. +....+...+...++..++..... ......
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~ 74 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVN-CPSSRTPRDFAQEILEALGLPLKS-----RQTSDE 74 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEE-HHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEE-eCCCCCHHHHHHHHHHHhCccccc-----cCCHHH
Confidence 4678999999999999999999886 3221 23456777 777678999999999999877543 134566
Q ss_pred HHHHHHHHHhCCCc-EEEecCCCCH---HHHHHHHhHcCCCCCCEEEEEeCC
Q 015891 137 LDYVLQQQLIGKRY-LIVLDDFEDM---EVCKHLSKVLPRGYGERLIITSRN 184 (398)
Q Consensus 137 ~~~~l~~~l~~k~~-LlVLDdv~~~---~~~~~l~~~l~~~~gs~IIiTTR~ 184 (398)
....+.+.+...+. +||+||++.. ..++.+..... ..+.++|++.+.
T Consensus 75 l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 75 LRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred HHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh-CCCCeEEEEECh
Confidence 66777788876655 9999999865 44445544443 667788887765
No 47
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=6.9e-08 Score=86.34 Aligned_cols=130 Identities=20% Similarity=0.204 Sum_probs=82.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc---------eEEEEecCCcc------c----------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP---------RIWVCTMSGQK------T---------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~---------~~~v~~v~~~~------~---------------- 107 (398)
.-.+++|+|++|+|||||++.+..-... .. .|+. ...+.++.+.. +
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~ 104 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK 104 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCH
Confidence 4568999999999999999999764110 00 0110 00011111110 0
Q ss_pred --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
......+++..+++... .......+.+++++..+.+.+..++-+++||++. |......+...+. ...|..|
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 184 (213)
T cd03259 105 AEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITT 184 (213)
T ss_pred HHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 01223456677777542 2223458899999999999999999999999999 4444444444443 1237889
Q ss_pred EEEeCChHHHHHh
Q 015891 179 IITSRNEKLTTEM 191 (398)
Q Consensus 179 IiTTR~~~v~~~~ 191 (398)
|++||+......+
T Consensus 185 i~~sH~~~~~~~~ 197 (213)
T cd03259 185 IYVTHDQEEALAL 197 (213)
T ss_pred EEEecCHHHHHHh
Confidence 9999998876654
No 48
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=7.9e-08 Score=97.04 Aligned_cols=196 Identities=15% Similarity=0.140 Sum_probs=111.9
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
+++||.+...+.|..++.. ..-...+.++|+.|+||||+|+.+++...-...... ..+..-.....+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~---grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~--------~pCg~C~sC~~I~~ 83 (702)
T PRK14960 15 NELVGQNHVSRALSSALER---GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTS--------TPCEVCATCKAVNE 83 (702)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCC--------CCCccCHHHHHHhc
Confidence 6789999999999999964 223568899999999999999999876211111100 00000000000000
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCCh-HHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRNE-KLTT 189 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~~-~v~~ 189 (398)
.-...-......+....+..+..+... ..++..++|+|+++ +....+.|...+.. ..+.++|++|.+. .+..
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 000000000000012233333322221 13456799999999 44566666666653 3456777777664 3333
Q ss_pred HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
.+......+++.+++. ++....+.+.+...+....+ +.+..|++.++|-+..+..
T Consensus 164 TIlSRCq~feFkpLs~-eEI~k~L~~Il~kEgI~id~---eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 164 TVISRCLQFTLRPLAV-DEITKHLGAILEKEQIAADQ---DAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHhhheeeccCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 3335567899999999 66777777766544433333 3667788889988866543
No 49
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.83 E-value=2e-08 Score=91.42 Aligned_cols=153 Identities=15% Similarity=0.229 Sum_probs=103.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCC------------------------------CCccccceEEEEecC-------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD------------------------------VKTQFVPRIWVCTMS------- 103 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~------------------------------~~~~F~~~~~v~~v~------- 103 (398)
..-.+.+|+|.+|.|||||.+.+-.=++ +..+|.. +|-.+|.
T Consensus 30 ~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL-LssrTV~~NvA~PL 108 (339)
T COG1135 30 PKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNL-LSSRTVFENVAFPL 108 (339)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccc-cccchHHhhhhhhH
Confidence 3456899999999999999999832100 0111211 0000011
Q ss_pred -----CcccHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHc---C
Q 015891 104 -----GQKTAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVL---P 171 (398)
Q Consensus 104 -----~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l---~ 171 (398)
......+-..++++.+|+.+.. ..+...++++.++..++++|...|-+|+.|+++ |++.-+.+...+ .
T Consensus 109 eiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In 188 (339)
T COG1135 109 ELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDIN 188 (339)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHH
Confidence 1123445667888888988643 345569999999999999999999999999999 443333333333 3
Q ss_pred CCCCCEEEEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHH
Q 015891 172 RGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYR 214 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~ 214 (398)
..-|-+|+++||..+|...+|+...++.=+.+-+....+.+|.
T Consensus 189 ~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 189 RELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred HHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 4569999999999999999877666666555555455566664
No 50
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.83 E-value=7.5e-08 Score=85.97 Aligned_cols=137 Identities=20% Similarity=0.173 Sum_probs=85.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc--------------ceEEEEecC----Cccc-------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV--------------PRIWVCTMS----GQKT------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~--------------~~~~v~~v~----~~~~------------- 107 (398)
.-.+++|+|++|+|||||++.++..... .. .|+ ...++..-. ...+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~ 105 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG 105 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC
Confidence 4578999999999999999999764211 00 010 011111000 0000
Q ss_pred -----HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCC
Q 015891 108 -----AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGE 176 (398)
Q Consensus 108 -----~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs 176 (398)
.......++..+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+.
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~ 185 (211)
T cd03225 106 LPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGK 185 (211)
T ss_pred CCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 01123446666776532 2233458999999999999999999999999999 4444444444443 12378
Q ss_pred EEEEEeCChHHHHHhcCCCceEEc
Q 015891 177 RLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 177 ~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
.||++||+...+..++ ++++.+
T Consensus 186 tvi~~sH~~~~~~~~~--d~i~~l 207 (211)
T cd03225 186 TIIIVTHDLDLLLELA--DRVIVL 207 (211)
T ss_pred EEEEEeCCHHHHHHhC--CEEEEE
Confidence 8999999988776643 344444
No 51
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.82 E-value=5.9e-08 Score=87.48 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=80.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEe-----------cCCcc---------------c---HHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCT-----------MSGQK---------------T---AESIV 112 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~-----------v~~~~---------------~---~~~~~ 112 (398)
.-.+++|.|++|+|||||++.+..-.. ...+.+++.. +.... . .....
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 123 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKI 123 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 457899999999999999999987521 1111111110 00000 0 11123
Q ss_pred HHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChH
Q 015891 113 KRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEK 186 (398)
Q Consensus 113 ~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~ 186 (398)
..+++.+++.... ......+.+++++..+.+.+..++-++|||++. |....+.+...+. ...+..||++||+.+
T Consensus 124 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~ 203 (224)
T cd03220 124 DEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS 203 (224)
T ss_pred HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 4455666665422 223348899999999999999999999999999 4443333333332 123678999999988
Q ss_pred HHHHh
Q 015891 187 LTTEM 191 (398)
Q Consensus 187 v~~~~ 191 (398)
.+..+
T Consensus 204 ~~~~~ 208 (224)
T cd03220 204 SIKRL 208 (224)
T ss_pred HHHHh
Confidence 77664
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=98.82 E-value=4.5e-08 Score=98.28 Aligned_cols=179 Identities=18% Similarity=0.285 Sum_probs=107.8
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
++++|.+..++.|..|+.........+.+.|+|++|+||||+|+.+++. +. |. .+-+. .+.... ...+..++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ieln-asd~r~-~~~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELN-ASDQRT-ADVIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEc-cccccc-HHHHHHHHH
Confidence 5689999999999999975322223788999999999999999999998 32 22 12222 332221 222333332
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH------HHHHHHHhHcCCCCCCEEEEEeCChH-HHH-
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM------EVCKHLSKVLPRGYGERLIITSRNEK-LTT- 189 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~------~~~~~l~~~l~~~~gs~IIiTTR~~~-v~~- 189 (398)
...... ..+..++.+||+||++.. .....+...+.. .++.||+|+.+.. ...
T Consensus 87 ~~~~~~-------------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 87 EAATSG-------------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK-AKQPIILTANDPYDPSLR 146 (482)
T ss_pred HhhccC-------------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc-CCCCEEEeccCccccchh
Confidence 211100 001135789999999843 234455545543 3455666665432 211
Q ss_pred HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
.+......+++.+++. +.....+.+.+...+...++ +....|++.++|-...++
T Consensus 147 ~Lrsr~~~I~f~~~~~-~~i~~~L~~i~~~egi~i~~---eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 147 ELRNACLMIEFKRLST-RSIVPVLKRICRKEGIECDD---EALKEIAERSGGDLRSAI 200 (482)
T ss_pred hHhccceEEEecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 2334467889999998 55666666655444433333 367788888888776554
No 53
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.82 E-value=8e-08 Score=82.38 Aligned_cols=129 Identities=15% Similarity=0.082 Sum_probs=79.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-cc--ccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQ--FVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLD 138 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~--F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 138 (398)
.-.+++|.|++|+|||||++.+....... .. ++....+.++.+...... ..+.+.+... .....+.+++++
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~--~tv~~nl~~~----~~~~LS~G~~~r 99 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPL--GTLREQLIYP----WDDVLSGGEQQR 99 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcccc--ccHHHHhhcc----CCCCCCHHHHHH
Confidence 45689999999999999999998762211 11 111111222333322110 1222222111 123478899999
Q ss_pred HHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 139 YVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 139 ~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..+.+.+..++-++++|++. |....+.+...+... +..||++||+..... . .++++.+
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsh~~~~~~-~--~d~i~~l 160 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-GITVISVGHRPSLWK-F--HDRVLDL 160 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-CCEEEEEeCChhHHh-h--CCEEEEE
Confidence 99999999999999999998 444444444444322 578999999987654 2 3455554
No 54
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=8.5e-08 Score=88.18 Aligned_cols=137 Identities=18% Similarity=0.194 Sum_probs=86.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccce------EEEEecCCc------ccH------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPR------IWVCTMSGQ------KTA------------------ 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~------~~v~~v~~~------~~~------------------ 108 (398)
.-.+++|+|++|+|||||++.++.-... .. .|+.. ..+.++.+. .+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR 105 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHH
Confidence 4568999999999999999999765211 00 01000 001111111 000
Q ss_pred HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEE
Q 015891 109 ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIIT 181 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiT 181 (398)
.....++++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++
T Consensus 106 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviiv 185 (255)
T PRK11248 106 LEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLI 185 (255)
T ss_pred HHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 1224556777776542 2233458999999999999999999999999999 4544444444443 1247889999
Q ss_pred eCChHHHHHhcCCCceEEc
Q 015891 182 SRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 182 TR~~~v~~~~~~~~~~~~l 200 (398)
||+.+.+..++ ++++.+
T Consensus 186 sH~~~~~~~~~--d~i~~l 202 (255)
T PRK11248 186 THDIEEAVFMA--TELVLL 202 (255)
T ss_pred eCCHHHHHHhC--CEEEEE
Confidence 99998776653 344544
No 55
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.81 E-value=8.9e-09 Score=89.64 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=33.5
Q ss_pred CcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 39 NVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 39 ~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.||||++++++|...|. .......+.+.|+|++|+|||+|++.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999996 335667899999999999999999999887
No 56
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=5.7e-08 Score=87.32 Aligned_cols=137 Identities=13% Similarity=0.180 Sum_probs=85.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccce----------EEEEecCCc------cc---------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPR----------IWVCTMSGQ------KT--------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~----------~~v~~v~~~------~~--------------- 107 (398)
.-.+++|.|++|+|||||++.++..... .. .|+.. .-+.++.+. .+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP 104 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC
Confidence 4578999999999999999999764211 00 01000 001111111 01
Q ss_pred ---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCE
Q 015891 108 ---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGER 177 (398)
Q Consensus 108 ---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~ 177 (398)
.......+++.+++... .......+.+++++..+.+.+..++-++++|++. |....+.+...+. ...+..
T Consensus 105 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 184 (220)
T cd03265 105 GAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184 (220)
T ss_pred HHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 11223456666776542 2223348899999999999999999999999999 4444444444443 223778
Q ss_pred EEEEeCChHHHHHhcCCCceEEc
Q 015891 178 LIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 178 IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
||++||+...+..++ ++++.+
T Consensus 185 vi~~tH~~~~~~~~~--d~i~~l 205 (220)
T cd03265 185 ILLTTHYMEEAEQLC--DRVAII 205 (220)
T ss_pred EEEEeCCHHHHHHhC--CEEEEE
Confidence 999999998776643 344444
No 57
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=5.7e-08 Score=97.20 Aligned_cols=193 Identities=18% Similarity=0.144 Sum_probs=109.9
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
++++|.+..++.|..++.. ..-...+.++|++|+||||+|+.+++...-...+...+|.+ .+ . ..+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~---~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C-~s----c----~~i~~ 81 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQ---GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC-ES----C----LAVRR 81 (504)
T ss_pred HHhcChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC-hh----h----HHHhc
Confidence 5689999999999998864 22345679999999999999999987632112222234433 11 0 00000
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCCC--HHHHHHHHhHcCC-CCCCEEEEEeCC-hHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFED--MEVCKHLSKVLPR-GYGERLIITSRN-EKLT 188 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~-~~gs~IIiTTR~-~~v~ 188 (398)
.................+..+. +...+ ..++.++|+||++. ....+.|...+.. ...+.+|++|.. ..+.
T Consensus 82 ~~h~dv~el~~~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 82 GAHPDVLEIDAASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred CCCCceEEecccccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence 0000000000000112222222 22222 24567999999983 3555566656543 334555666654 3333
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
..+......+++.+++. ++....+.+.+...+.... .+.+..|++.++|.+..+.
T Consensus 161 ~~I~SRc~~~~f~~ls~-~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 161 PTILSRTQHFRFRRLTE-EEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAE 215 (504)
T ss_pred hHHhcceEEEEecCCCH-HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 33434567899999999 6677777775544333322 2367778889999887664
No 58
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.80 E-value=4.9e-08 Score=87.62 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=81.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc----------eEEEEecCCc------cc---------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP----------RIWVCTMSGQ------KT--------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~----------~~~v~~v~~~------~~--------------- 107 (398)
.-.+++|.|++|+|||||++.+..-... .. .|+. .-.+.++.+. .+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 109 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK 109 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCC
Confidence 4568999999999999999999764211 00 0100 0001111111 01
Q ss_pred ---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEE
Q 015891 108 ---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERL 178 (398)
Q Consensus 108 ---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~I 178 (398)
......++++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..|
T Consensus 110 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 189 (218)
T cd03266 110 GDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCI 189 (218)
T ss_pred HHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 11233456667776532 2223347899999999999999999999999999 4444444444433 2347899
Q ss_pred EEEeCChHHHHHh
Q 015891 179 IITSRNEKLTTEM 191 (398)
Q Consensus 179 IiTTR~~~v~~~~ 191 (398)
|++||+...+..+
T Consensus 190 i~~tH~~~~~~~~ 202 (218)
T cd03266 190 LFSTHIMQEVERL 202 (218)
T ss_pred EEEeCCHHHHHHh
Confidence 9999998876654
No 59
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.80 E-value=4.4e-08 Score=86.09 Aligned_cols=171 Identities=18% Similarity=0.197 Sum_probs=93.9
Q ss_pred CCCcccchhhHHHHHHHHhcc-CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHH
Q 015891 37 PANVHGFANEELHLQKLLSNR-GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRI 115 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~-~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~i 115 (398)
-++|||.+.-++.+.-++... ...+....+.+|||+|+||||||..+++. ....|. +.+ .. . .
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~s-g~-~--i------- 86 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITS-GP-A--I------- 86 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEE-CC-C----------
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---ecc-ch-h--h-------
Confidence 478999999999887766531 13456778999999999999999999998 555553 222 11 0 0
Q ss_pred HHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC--CHHHHHHHHhHcCC---------CCCC--------
Q 015891 116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPR---------GYGE-------- 176 (398)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~---------~~gs-------- 176 (398)
.....+...+.. + .++.+|++|+++ +..+.+.|...+-. +++.
T Consensus 87 ----------------~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 87 ----------------EKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp -----------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred ----------------hhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 001111111111 1 346689999999 44555555544321 1111
Q ss_pred --E-EEEEeCChHHHHHhcCC-CceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891 177 --R-LIITSRNEKLTTEMVGE-ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED 245 (398)
Q Consensus 177 --~-IIiTTR~~~v~~~~~~~-~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 245 (398)
+ |=.|||...+...+.+. ..+.++..-+. ++...+..+....-+...+. +.+.+|+++|.|.|.-
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~-~el~~Iv~r~a~~l~i~i~~---~~~~~Ia~rsrGtPRi 217 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSE-EELAKIVKRSARILNIEIDE---DAAEEIARRSRGTPRI 217 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----TH-HHHHHHHHHCCHCTT-EE-H---HHHHHHHHCTTTSHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCH-HHHHHHHHHHHHHhCCCcCH---HHHHHHHHhcCCChHH
Confidence 2 33577765444444333 33457888888 66777777655444444333 4788899999999974
No 60
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=9.2e-08 Score=85.99 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=82.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc---------ceEEEEec---CCcccH------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV---------PRIWVCTM---SGQKTA------------------ 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~---------~~~~v~~v---~~~~~~------------------ 108 (398)
.-.+++|.|++|+|||||++.++.-... ... |+ ...++..- ....+.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 108 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEA 108 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHH
Confidence 3468999999999999999999765211 110 10 11111100 000011
Q ss_pred HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEE
Q 015891 109 ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIIT 181 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiT 181 (398)
......+++.+++... .......+.+++++..+.+++..++-+++||++. |....+.+...+. ...+..||++
T Consensus 109 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~ 188 (220)
T cd03293 109 RERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLV 188 (220)
T ss_pred HHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 1223456667777542 2233458999999999999999999999999999 4444444444443 1236789999
Q ss_pred eCChHHHHHh
Q 015891 182 SRNEKLTTEM 191 (398)
Q Consensus 182 TR~~~v~~~~ 191 (398)
||+...+..+
T Consensus 189 sH~~~~~~~~ 198 (220)
T cd03293 189 THDIDEAVFL 198 (220)
T ss_pred ecCHHHHHHh
Confidence 9998866554
No 61
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=1.3e-07 Score=85.99 Aligned_cols=131 Identities=17% Similarity=0.161 Sum_probs=82.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc--------------eEEEEecCCc------ccH----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP--------------RIWVCTMSGQ------KTA---------- 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~--------------~~~v~~v~~~------~~~---------- 108 (398)
.-.+++|+|++|+|||||++.+..-... ... |+. ...+.++.+. .+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 104 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE 104 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence 4568999999999999999999764210 000 000 0011111111 010
Q ss_pred ---------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891 109 ---------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG 173 (398)
Q Consensus 109 ---------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~ 173 (398)
......+++.+++... .......+++++++..+.+.+..++-+++||++. |....+.+...+. ..
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 184 (235)
T cd03261 105 HTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK 184 (235)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 1123445666776542 2223348999999999999999999999999999 4444444444443 12
Q ss_pred -CCCEEEEEeCChHHHHHhc
Q 015891 174 -YGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 174 -~gs~IIiTTR~~~v~~~~~ 192 (398)
.+..||++||+.+.+..++
T Consensus 185 ~~~~tvi~vsH~~~~~~~~~ 204 (235)
T cd03261 185 ELGLTSIMVTHDLDTAFAIA 204 (235)
T ss_pred hcCcEEEEEecCHHHHHHhc
Confidence 3788999999998776543
No 62
>PF13173 AAA_14: AAA domain
Probab=98.80 E-value=3.2e-08 Score=80.97 Aligned_cols=119 Identities=19% Similarity=0.246 Sum_probs=75.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQ 142 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 142 (398)
.+++.|.|+.|+|||||+++++++ .. .....++++ +...........+ ....+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~--~~-~~~~~~yi~-~~~~~~~~~~~~~----------------------~~~~~~ 55 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKD--LL-PPENILYIN-FDDPRDRRLADPD----------------------LLEYFL 55 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--hc-ccccceeec-cCCHHHHHHhhhh----------------------hHHHHH
Confidence 468999999999999999999987 22 223455655 3322211000000 112233
Q ss_pred HHHhCCCcEEEecCCCCH-HHHHHHHhHcCCCCCCEEEEEeCChHHHHH-----hcCCCceEEcCCCCChh
Q 015891 143 QQLIGKRYLIVLDDFEDM-EVCKHLSKVLPRGYGERLIITSRNEKLTTE-----MVGEENLHQLQPLSDQE 207 (398)
Q Consensus 143 ~~l~~k~~LlVLDdv~~~-~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~-----~~~~~~~~~l~~L~~~e 207 (398)
+....++.+|+||++... +|.+.+.......+..+|++|+........ +.+....+++.||+-.|
T Consensus 56 ~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 56 ELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 333347889999999965 555566555555567899999998766533 23445678999999743
No 63
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.80 E-value=8.8e-08 Score=80.06 Aligned_cols=113 Identities=21% Similarity=0.257 Sum_probs=76.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL 141 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l 141 (398)
.-.+++|.|++|+|||||++.+.... ....+.+++... ..++.-. ..+.++.++..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~--------------~~i~~~~------~lS~G~~~rv~l 81 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGST--------------VKIGYFE------QLSGGEKMRLAL 81 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCe--------------EEEEEEc------cCCHHHHHHHHH
Confidence 45789999999999999999998862 223444444310 0000000 047888999999
Q ss_pred HHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 142 QQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 142 ~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
.+.+..++-++++|++. |....+.+...+... +..||++||+.+.+..++ ++++.+
T Consensus 82 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-~~til~~th~~~~~~~~~--d~v~~l 140 (144)
T cd03221 82 AKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY-PGTVILVSHDRYFLDQVA--TKIIEL 140 (144)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhC--CEEEEE
Confidence 99999999999999998 444444554444322 468999999988776542 344443
No 64
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=2e-07 Score=88.49 Aligned_cols=178 Identities=15% Similarity=0.185 Sum_probs=109.3
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCC----CCCccccceEEEEecC-CcccHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKP----DVKTQFVPRIWVCTMS-GQKTAESIV 112 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~----~~~~~F~~~~~v~~v~-~~~~~~~~~ 112 (398)
++++|-+...+.+...+.. ..-...+.++|+.|+||||+|+.+++.. ....+.+...|.. .. ......+ +
T Consensus 4 ~~i~g~~~~~~~l~~~~~~---~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~~~~i~v~~-i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIK---NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-INKKSIGVDD-I 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHc---CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-ccCCCCCHHH-H
Confidence 4688999999999999864 2345678999999999999999998741 1122333323322 11 1111111 2
Q ss_pred HHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCChH-HH
Q 015891 113 KRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRNEK-LT 188 (398)
Q Consensus 113 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~~~-v~ 188 (398)
+++...+... -..+++-++|+|+++ +....+.|...+.. .+++.+|++|.+.+ +.
T Consensus 79 r~~~~~~~~~---------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll 137 (313)
T PRK05564 79 RNIIEEVNKK---------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQIL 137 (313)
T ss_pred HHHHHHHhcC---------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCc
Confidence 2333322211 112456688888877 55667777777763 34778888887654 33
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF 249 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 249 (398)
..+......+++.+++. +....++.+.+.... .+.+..++..++|.|..+..+
T Consensus 138 ~TI~SRc~~~~~~~~~~-~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 138 DTIKSRCQIYKLNRLSK-EEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HHHHhhceeeeCCCcCH-HHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 33445567899999998 556666665543211 124566778888888765544
No 65
>PRK08727 hypothetical protein; Validated
Probab=98.79 E-value=1.7e-07 Score=84.98 Aligned_cols=167 Identities=19% Similarity=0.184 Sum_probs=93.7
Q ss_pred CCcccchhh-HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891 38 ANVHGFANE-ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL 116 (398)
Q Consensus 38 ~~~vGR~~~-~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il 116 (398)
++|++.... +..+..+... .....+.|+|++|+|||+|+.++++. .......+.|+. +.. ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~----~~~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~-~~~------~~~~~~ 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAG----QSSDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLP-LQA------AAGRLR 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhc----cCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEe-HHH------hhhhHH
Confidence 556665543 3333333321 23356999999999999999999876 333333445555 211 000000
Q ss_pred HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC----HHHHHHHHhHcC--CCCCCEEEEEeCCh-----
Q 015891 117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED----MEVCKHLSKVLP--RGYGERLIITSRNE----- 185 (398)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~----~~~~~~l~~~l~--~~~gs~IIiTTR~~----- 185 (398)
..+ +.+ .+..+||+||++. ..+...+...+. ...+..||+||+..
T Consensus 86 ----------------------~~~-~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~ 141 (233)
T PRK08727 86 ----------------------DAL-EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLA 141 (233)
T ss_pred ----------------------HHH-HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhh
Confidence 011 111 2346999999982 233334444443 23467799999853
Q ss_pred ----HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891 186 ----KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDA 246 (398)
Q Consensus 186 ----~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 246 (398)
++.+.+ .....+++++++. ++...++.+.+...+...++ +...-|++.+.|-...+
T Consensus 142 ~~~~dL~SRl-~~~~~~~l~~~~~-e~~~~iL~~~a~~~~l~l~~---e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 142 LVLPDLRSRL-AQCIRIGLPVLDD-VARAAVLRERAQRRGLALDE---AAIDWLLTHGERELAGL 201 (233)
T ss_pred hhhHHHHHHH-hcCceEEecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHhCCCCHHHH
Confidence 222222 2256899999998 67777777633222333222 35566777776655544
No 66
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.79 E-value=7e-08 Score=88.14 Aligned_cols=136 Identities=18% Similarity=0.176 Sum_probs=85.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccceEEEEecCCc------ccHHH--------------HHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPRIWVCTMSGQ------KTAES--------------IVKRILKR 118 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~~~v~~v~~~------~~~~~--------------~~~~il~~ 118 (398)
.-.+++|+|++|+|||||++.+.....- .. .++.. -+.++.+. .+..+ ...+++..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~ 102 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP 102 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-eEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH
Confidence 4568999999999999999999875211 11 11110 11111111 11111 12345666
Q ss_pred cCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHh
Q 015891 119 LGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 119 l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~ 191 (398)
+++... .......++++.++..+.+.|..++-+++||++. |......+...+. ...+..||++||+...+..+
T Consensus 103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 103 LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 666532 1223348899999999999999999999999999 4444444444443 22478999999998877765
Q ss_pred cCCCceEEc
Q 015891 192 VGEENLHQL 200 (398)
Q Consensus 192 ~~~~~~~~l 200 (398)
+ ++++.+
T Consensus 183 ~--d~i~~l 189 (246)
T cd03237 183 A--DRLIVF 189 (246)
T ss_pred C--CEEEEE
Confidence 3 344444
No 67
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.78 E-value=7.8e-08 Score=84.39 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=77.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc----------------ceEEEEecCCcc-------cH-------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV----------------PRIWVCTMSGQK-------TA------- 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~----------------~~~~v~~v~~~~-------~~------- 108 (398)
.-.+++|.|++|+|||||++.+...... .. .|+ .+.++ .+.. +.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~---~q~~~~~~~~~tv~~nl~~~ 93 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLV---FQDPDDQLFAADVDQDVAFG 93 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEE---ecChhhccccccHHHHHHHH
Confidence 4568999999999999999999754211 00 000 01111 1110 00
Q ss_pred -----------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891 109 -----------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-- 171 (398)
Q Consensus 109 -----------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-- 171 (398)
......+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 173 (190)
T TIGR01166 94 PLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL 173 (190)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1123455666666542 2223458899999999999999999999999999 4444444444443
Q ss_pred CCCCCEEEEEeCChH
Q 015891 172 RGYGERLIITSRNEK 186 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~ 186 (398)
...|..||++||+.+
T Consensus 174 ~~~~~tili~sH~~~ 188 (190)
T TIGR01166 174 RAEGMTVVISTHDVD 188 (190)
T ss_pred HHcCCEEEEEeeccc
Confidence 234789999999864
No 68
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.78 E-value=8.9e-08 Score=91.52 Aligned_cols=134 Identities=16% Similarity=0.201 Sum_probs=84.2
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc-------------ceEEEEe---cCCcccH-------------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV-------------PRIWVCT---MSGQKTA------------- 108 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~-------------~~~~v~~---v~~~~~~------------- 108 (398)
..-.+++|+|++|+|||||++.+..-..- .. .+. ...++.. +....+.
T Consensus 65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~ 144 (340)
T PRK13536 65 ASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM 144 (340)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCC
Confidence 34579999999999999999999764210 00 000 0111110 0000011
Q ss_pred -----HHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCE
Q 015891 109 -----ESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGER 177 (398)
Q Consensus 109 -----~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~ 177 (398)
......++..+++.... ......+.+++++..+.+.+..++-+++||++. |......+...+. ...|..
T Consensus 145 ~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~t 224 (340)
T PRK13536 145 STREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 224 (340)
T ss_pred CHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 11233556666765422 223348999999999999999999999999999 4444444443332 234789
Q ss_pred EEEEeCChHHHHHhcCC
Q 015891 178 LIITSRNEKLTTEMVGE 194 (398)
Q Consensus 178 IIiTTR~~~v~~~~~~~ 194 (398)
||+|||+.+.+..+++.
T Consensus 225 ilisSH~l~e~~~~~d~ 241 (340)
T PRK13536 225 ILLTTHFMEEAERLCDR 241 (340)
T ss_pred EEEECCCHHHHHHhCCE
Confidence 99999999887765443
No 69
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.78 E-value=1.3e-07 Score=86.97 Aligned_cols=130 Identities=17% Similarity=0.143 Sum_probs=83.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc---------eEEEEecC---Cccc------------HHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP---------RIWVCTMS---GQKT------------AESIVKR 114 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~---------~~~v~~v~---~~~~------------~~~~~~~ 114 (398)
.-.+++|+|++|+|||||++.+..-... ... |+. ..|+..-. ...+ .......
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 116 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQ 116 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHH
Confidence 4568999999999999999999765211 110 111 11221000 0001 1223456
Q ss_pred HHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHH
Q 015891 115 ILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKL 187 (398)
Q Consensus 115 il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v 187 (398)
+++.+++... .......+.+++++..+.+.+..++-+++||++. |......+...+. ...+..||++||+...
T Consensus 117 ~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~ 196 (257)
T PRK11247 117 ALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE 196 (257)
T ss_pred HHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 6777777542 2223458999999999999999999999999999 4444444443332 2247889999999887
Q ss_pred HHHh
Q 015891 188 TTEM 191 (398)
Q Consensus 188 ~~~~ 191 (398)
+..+
T Consensus 197 ~~~~ 200 (257)
T PRK11247 197 AVAM 200 (257)
T ss_pred HHHh
Confidence 6654
No 70
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.78 E-value=7.9e-08 Score=86.39 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=82.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccce----------EEEEecCCc------cc---------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVPR----------IWVCTMSGQ------KT--------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~~----------~~v~~v~~~------~~--------------- 107 (398)
.-.+++|+|++|+|||||++.++.-... ... |+.. ..+.++.+. .+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP 106 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC
Confidence 4568999999999999999999764211 000 1000 001111111 00
Q ss_pred ---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEE
Q 015891 108 ---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLI 179 (398)
Q Consensus 108 ---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~II 179 (398)
......++++.+++... .......+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||
T Consensus 107 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii 186 (220)
T cd03263 107 KSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSII 186 (220)
T ss_pred HHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEE
Confidence 01223456666776532 2223347899999999999999999999999999 4444444444443 12347899
Q ss_pred EEeCChHHHHHhc
Q 015891 180 ITSRNEKLTTEMV 192 (398)
Q Consensus 180 iTTR~~~v~~~~~ 192 (398)
++||+...+..++
T Consensus 187 ~~sH~~~~~~~~~ 199 (220)
T cd03263 187 LTTHSMDEAEALC 199 (220)
T ss_pred EEcCCHHHHHHhc
Confidence 9999998776643
No 71
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.78 E-value=8.3e-08 Score=85.88 Aligned_cols=137 Identities=16% Similarity=0.203 Sum_probs=85.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--c-----------------cceEEEEecC---Cccc-----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--F-----------------VPRIWVCTMS---GQKT----------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F-----------------~~~~~v~~v~---~~~~----------- 107 (398)
.-.+++|+|++|+|||||++.+..-... ... | ....++..-. ...+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV 106 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence 4568999999999999999999764210 000 0 0111111000 0001
Q ss_pred -------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891 108 -------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY 174 (398)
Q Consensus 108 -------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~ 174 (398)
.......+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (214)
T TIGR02673 107 RGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR 186 (214)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 11233456666676542 2223358899999999999999999999999999 4444444444443 124
Q ss_pred CCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 175 GERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
+..||++||+...+..++ ++++.+
T Consensus 187 ~~tii~~tH~~~~~~~~~--d~i~~l 210 (214)
T TIGR02673 187 GTTVIVATHDLSLVDRVA--HRVIIL 210 (214)
T ss_pred CCEEEEEeCCHHHHHHhc--CEEEEe
Confidence 788999999988776543 344444
No 72
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=1.4e-07 Score=93.52 Aligned_cols=195 Identities=15% Similarity=0.151 Sum_probs=109.2
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
+++||.+..++.|...+.. ..-...+.++|+.|+||||+|+.+++. +...+... . .....-.....+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~---~ri~ha~Lf~Gp~G~GKTT~ArilAk~--LnC~~~~~-----~-~pCg~C~~C~~i~~ 81 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTL---NKIPQSILLVGASGVGKTTCARIISLC--LNCSNGPT-----S-DPCGTCHNCISIKN 81 (491)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCccHHHHHHHHHHH--HcCcCCCC-----C-CCccccHHHHHHhc
Confidence 6789999999999988864 223458999999999999999999764 11000000 0 00000000011111
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEe-CChHHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITS-RNEKLTT 189 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTT-R~~~v~~ 189 (398)
....+.......+..+.+..+..+... +..+.-++|+|+++ +....+.|...+.. .+.+++|++| ....+..
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~ 161 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPV 161 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHH
Confidence 000000000000112223333222221 12456799999998 44556666666652 3455666555 4455655
Q ss_pred HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
.+......+++.+++. ++....+.+.+...+...++ +.+..|++.++|-+..+.
T Consensus 162 tI~SRc~~~~f~~l~~-~el~~~L~~ia~~Egi~i~~---eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 162 TIISRCQRFDLQKIPT-DKLVEHLVDIAKKENIEHDE---ESLKLIAENSSGSMRNAL 215 (491)
T ss_pred HHHHhheeeecccccH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 5556678899999998 66777777755544433333 356778888988876543
No 73
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=7.2e-08 Score=83.29 Aligned_cols=130 Identities=21% Similarity=0.267 Sum_probs=78.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCC--CCCCC-C------CcCCC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGV--DDGTT-N------SFEGQ 132 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~--~~~~~-~------~~~~~ 132 (398)
.-.+++|+|++|+|||||++.++... ....+.+++....- .... ..+...++. +.... . ....+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~-~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDI-KKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEc-ccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 45689999999999999999998752 22234444321100 0000 011111110 00000 0 00157
Q ss_pred chHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 133 GLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 133 ~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
.+++++..+.+.+..++-++++|++. |....+.+...+. ...|..||++||+......++ ++++.+
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~--d~i~~l 168 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLC--DRVAIL 168 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhC--CEEEEE
Confidence 88999999999999999999999999 4444444444443 123788999999998777543 344444
No 74
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=8.5e-08 Score=85.61 Aligned_cols=134 Identities=17% Similarity=0.178 Sum_probs=82.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCC-Ccc--c-------------cceEEEEecC---CcccH-----------------
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--F-------------VPRIWVCTMS---GQKTA----------------- 108 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F-------------~~~~~v~~v~---~~~~~----------------- 108 (398)
+++|+|++|+|||||++.++.-... ... | ....++..-. ...+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE 106 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHH
Confidence 8999999999999999999754110 000 0 0011111000 00011
Q ss_pred -HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEe
Q 015891 109 -ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITS 182 (398)
Q Consensus 109 -~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTT 182 (398)
......+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++|
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vs 186 (211)
T cd03264 107 VKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILST 186 (211)
T ss_pred HHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 1223456666666532 2233448999999999999999999999999999 4444444444443 12247899999
Q ss_pred CChHHHHHhcCCCceEEc
Q 015891 183 RNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 183 R~~~v~~~~~~~~~~~~l 200 (398)
|+......++ ++++.+
T Consensus 187 H~~~~~~~~~--d~i~~l 202 (211)
T cd03264 187 HIVEDVESLC--NQVAVL 202 (211)
T ss_pred CCHHHHHHhC--CEEEEE
Confidence 9998776543 344444
No 75
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.78 E-value=1.1e-07 Score=89.72 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=83.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE----------------EEecCCc------ccH-----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW----------------VCTMSGQ------KTA----------- 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~----------------v~~v~~~------~~~----------- 108 (398)
.-.+++|.|++|+|||||++.+...... ..+.++ +.++.+. .+.
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~~---~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~ 103 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYLPP---DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY 103 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence 4568999999999999999999764211 011111 1111110 001
Q ss_pred -------HHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCC
Q 015891 109 -------ESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGE 176 (398)
Q Consensus 109 -------~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs 176 (398)
......++..+++.... ......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+.
T Consensus 104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~ 183 (301)
T TIGR03522 104 GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDK 183 (301)
T ss_pred CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 12345566677776432 222348899999999999999999999999999 4444444443332 12368
Q ss_pred EEEEEeCChHHHHHhcCC
Q 015891 177 RLIITSRNEKLTTEMVGE 194 (398)
Q Consensus 177 ~IIiTTR~~~v~~~~~~~ 194 (398)
.||+|||+...+..+++.
T Consensus 184 tiii~sH~l~~~~~~~d~ 201 (301)
T TIGR03522 184 TIILSTHIMQEVEAICDR 201 (301)
T ss_pred EEEEEcCCHHHHHHhCCE
Confidence 899999999877665444
No 76
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.78 E-value=1.3e-07 Score=84.46 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=82.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc------------ceEEEEec---CCccc----------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV------------PRIWVCTM---SGQKT---------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~------------~~~~v~~v---~~~~~---------------- 107 (398)
.-.+++|.|++|+|||||++.+....... . .|+ ...++..- ....+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 104 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPK 104 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCH
Confidence 45689999999999999999997652110 0 010 01121100 00001
Q ss_pred --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
..+....+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..|
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tv 184 (213)
T cd03301 105 DEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTT 184 (213)
T ss_pred HHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 01223455667776532 2233458899999999999999999999999999 4444444444443 1237899
Q ss_pred EEEeCChHHHHHh
Q 015891 179 IITSRNEKLTTEM 191 (398)
Q Consensus 179 IiTTR~~~v~~~~ 191 (398)
|++||+...+..+
T Consensus 185 i~~sH~~~~~~~~ 197 (213)
T cd03301 185 IYVTHDQVEAMTM 197 (213)
T ss_pred EEEeCCHHHHHHh
Confidence 9999998876654
No 77
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.78 E-value=1.7e-07 Score=85.02 Aligned_cols=169 Identities=18% Similarity=0.129 Sum_probs=94.0
Q ss_pred CCcc-cch-hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHH
Q 015891 38 ANVH-GFA-NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRI 115 (398)
Q Consensus 38 ~~~v-GR~-~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~i 115 (398)
++|+ |-. ..+..+..+... .....+.|+|++|+|||+|++++++. ....-..+.|+. +.....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~----~~~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~-~~~~~~-------- 86 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ----EHSGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVP-LDKRAW-------- 86 (235)
T ss_pred cccccCccHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEE-HHHHhh--------
Confidence 4454 622 234444444422 33468999999999999999999876 222222344555 321000
Q ss_pred HHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC----HHHHHHHHhHcC--CCCC-CEEEEEeCCh---
Q 015891 116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED----MEVCKHLSKVLP--RGYG-ERLIITSRNE--- 185 (398)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~----~~~~~~l~~~l~--~~~g-s~IIiTTR~~--- 185 (398)
.... +.+.+. +-.+|++||+.. ..+.+.+...+. ...| .++|+||+..
T Consensus 87 -----------------~~~~----~~~~~~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 87 -----------------FVPE----VLEGME-QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQ 144 (235)
T ss_pred -----------------hhHH----HHHHhh-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHH
Confidence 0001 111111 125899999973 344445544443 1223 4799999854
Q ss_pred ------HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 186 ------KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 186 ------~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
++.+.+ ....++++++++. ++...++.+.+...+...++ +...-|++.+.|-..++..
T Consensus 145 l~~~~~~L~SRl-~~g~~~~l~~~~~-~~~~~~l~~~a~~~~~~l~~---~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 145 LNLGLPDLASRL-DWGQIYKLQPLSD-EEKLQALQLRARLRGFELPE---DVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred cCcccHHHHHHH-hCCceeeecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHhhcCCHHHHHH
Confidence 233333 3457899999998 66766666633332333333 3566677777766655443
No 78
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.78 E-value=1e-07 Score=86.44 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=83.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc------------eEEEEecCCc------cc-------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP------------RIWVCTMSGQ------KT------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~------------~~~v~~v~~~------~~------------- 107 (398)
.-.+++|+|++|+|||||++.++.-.... . .++. ...+.++.+. .+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG 104 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC
Confidence 45689999999999999999997542110 0 0000 0001111111 00
Q ss_pred -----HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCC
Q 015891 108 -----AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGE 176 (398)
Q Consensus 108 -----~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs 176 (398)
.......+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+.
T Consensus 105 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~ 184 (232)
T cd03218 105 LSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGI 184 (232)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 01123456666766542 2223348899999999999999999999999999 4444444444332 22477
Q ss_pred EEEEEeCChHHHHHhcCCCceEEc
Q 015891 177 RLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 177 ~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
.||++||+.+.+..++ ++++.+
T Consensus 185 tii~~sH~~~~~~~~~--d~i~~l 206 (232)
T cd03218 185 GVLITDHNVRETLSIT--DRAYII 206 (232)
T ss_pred EEEEEeCCHHHHHHhC--CEEEEE
Confidence 8999999987666543 334444
No 79
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=1e-07 Score=93.30 Aligned_cols=204 Identities=12% Similarity=0.104 Sum_probs=108.6
Q ss_pred CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891 37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL 116 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il 116 (398)
-++++|.+..++.|..++.. ..-...+.++|+.|+||||+|+.+++...-...+....|..........-...+.+.
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~---~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRM---GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred HhhccChHHHHHHHHHHHHh---CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 36789999999999998864 123456889999999999999999876211111111111100011111001111111
Q ss_pred HHcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCCC--HHHHHHHHhHcCCC-CCCEEEEEe-CChHH
Q 015891 117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFED--MEVCKHLSKVLPRG-YGERLIITS-RNEKL 187 (398)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~~-~gs~IIiTT-R~~~v 187 (398)
.....+............+..+. +...+ ..++.++|+||++. ....+.+...+... +.+.+|++| +...+
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 11111000000001122333333 22333 24566999999983 34555666666533 355555555 44445
Q ss_pred HHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 188 TTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 188 ~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
...+......+++.+++. ++....+...+...+...+ .+.+..|++.++|.+..+..
T Consensus 171 ~~tl~sR~~~v~f~~l~~-~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 171 PATIASRCQRFNFKRIPL-EEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 444433456789999998 6566666665543332222 23677788889987765543
No 80
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=6.6e-08 Score=83.94 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=78.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEe--cCCcc-cHHHHHHHHHHHcCC--CCCCCC-------Cc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCT--MSGQK-TAESIVKRILKRLGV--DDGTTN-------SF 129 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~--v~~~~-~~~~~~~~il~~l~~--~~~~~~-------~~ 129 (398)
.-.+++|.|++|+|||||++.++.. . ....+.+.+.. +.... .... ..+.++. +..... ..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~--~-~~~~G~i~~~g~~~~~~~~~~~~----~~~~i~~~~q~~~~~~~~t~~~~l 97 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL--E-EPDSGSILIDGEDLTDLEDELPP----LRRRIGMVFQDFALFPHLTVLENI 97 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--C-CCCceEEEECCEEccccchhHHH----HhhcEEEEecCCccCCCCCHHHhe
Confidence 4568999999999999999999875 2 22334444321 11100 0011 1111110 000000 00
Q ss_pred --CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 130 --EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 130 --~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..+.++.++..+.+++..++-+++||++. |......+...+. ...+..||++||+......++ ++++.+
T Consensus 98 ~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~--d~i~~l 174 (178)
T cd03229 98 ALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLA--DRVVVL 174 (178)
T ss_pred eecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc--CEEEEE
Confidence 05788999999999999999999999998 4444444444443 222689999999988776542 344444
No 81
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.77 E-value=1.4e-07 Score=84.41 Aligned_cols=137 Identities=15% Similarity=0.180 Sum_probs=85.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc-----------------ceEEEEe---cCCccc-----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV-----------------PRIWVCT---MSGQKT----------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~-----------------~~~~v~~---v~~~~~----------- 107 (398)
.-.+++|+|++|+|||||++.++.-... ... |+ .+.++.. +....+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~ 105 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV 105 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence 4568999999999999999999765211 000 10 0111110 000000
Q ss_pred -------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891 108 -------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY 174 (398)
Q Consensus 108 -------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~ 174 (398)
....+..+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 185 (214)
T cd03292 106 TGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA 185 (214)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc
Confidence 01223456666666542 2223347899999999999999999999999999 4444444444433 234
Q ss_pred CCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 175 GERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
+..||++||+......++ ++++.+
T Consensus 186 ~~tiiivtH~~~~~~~~~--d~i~~l 209 (214)
T cd03292 186 GTTVVVATHAKELVDTTR--HRVIAL 209 (214)
T ss_pred CCEEEEEeCCHHHHHHhC--CEEEEE
Confidence 788999999988776543 344444
No 82
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.77 E-value=1e-07 Score=79.07 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=69.8
Q ss_pred ccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcC
Q 015891 41 HGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLG 120 (398)
Q Consensus 41 vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~ 120 (398)
+|++..+..+...+.. ...+.+.|+|++|+|||++++.+++. ....-..++++. .............+...
T Consensus 1 ~~~~~~~~~i~~~~~~----~~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALEL----PPPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLN-ASDLLEGLVVAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEe-hhhhhhhhHHHHHhhhh--
Confidence 4788888999888853 35678999999999999999999987 322222344444 33222211111000000
Q ss_pred CCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH--HHHHHHHhHcC---C----CCCCEEEEEeCCh
Q 015891 121 VDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM--EVCKHLSKVLP---R----GYGERLIITSRNE 185 (398)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~---~----~~gs~IIiTTR~~ 185 (398)
............++.++|+||++.. .....+...+. . ..+.++|+||...
T Consensus 72 ---------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ---------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ---------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0111122333456789999999953 22222222222 1 3578888888765
No 83
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.77 E-value=1.5e-07 Score=81.61 Aligned_cols=129 Identities=17% Similarity=0.092 Sum_probs=78.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCC--CCCCC--------CcCC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVD--DGTTN--------SFEG 131 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~--~~~~~--------~~~~ 131 (398)
.-.+++|.|++|+|||||++.++... ....+.+++... ........+-..++.- ..... ....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~----~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV----PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE----EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 45689999999999999999998762 122333333311 1111001111111100 00000 2346
Q ss_pred CchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 132 QGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 132 ~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+...... .++++.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~---~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH---MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh---CCEEEEE
Confidence 889999999999999999999999999 4444444443332 1247889999999987753 2445544
No 84
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.77 E-value=2e-07 Score=88.68 Aligned_cols=181 Identities=14% Similarity=0.214 Sum_probs=103.0
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE-ecCCcccHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC-TMSGQKTAESIVKRIL 116 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~-~v~~~~~~~~~~~~il 116 (398)
++++|++..++.+..++.. .....+.|+|++|+||||+++.+++... ...+.. .++. +.+...... .....+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~----~~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~-~~i~~~~~~~~~~~-~~~~~i 89 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKE----KNMPHLLFAGPPGTGKTTAALALARELY-GEDWRE-NFLELNASDERGID-VIRNKI 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc-ceEEeccccccchH-HHHHHH
Confidence 5689999999999999854 3344579999999999999999987621 111211 1222 011111111 111111
Q ss_pred HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCCh-HHHHHhc
Q 015891 117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNE-KLTTEMV 192 (398)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~-~v~~~~~ 192 (398)
..+....+ .....+-++++||++. .+..+.+...+. ....+.+|+++... .+...+.
T Consensus 90 ~~~~~~~~-------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~ 150 (319)
T PRK00440 90 KEFARTAP-------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ 150 (319)
T ss_pred HHHHhcCC-------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH
Confidence 11110000 0012356999999983 344445555554 33456777776432 2322222
Q ss_pred CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 193 GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 193 ~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
.....+++.+++. ++....+.+.+...+...++ +.+..+++.++|.+..+..
T Consensus 151 sr~~~~~~~~l~~-~ei~~~l~~~~~~~~~~i~~---~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 151 SRCAVFRFSPLKK-EAVAERLRYIAENEGIEITD---DALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred HHhheeeeCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 3345789999998 55666666655443333333 3677788889888776543
No 85
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.77 E-value=8e-08 Score=91.77 Aligned_cols=133 Identities=15% Similarity=0.216 Sum_probs=85.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c----------cc--------c-ceEEEEe---cCCccc-----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T----------QF--------V-PRIWVCT---MSGQKT----------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~----------~F--------~-~~~~v~~---v~~~~~----------- 107 (398)
.-.+++|+|++|+|||||++.+..-.... . .+ . .+.++.. +....+
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~ 109 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence 45689999999999999999996542110 0 00 0 0111110 000000
Q ss_pred -------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CC
Q 015891 108 -------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RG 173 (398)
Q Consensus 108 -------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~ 173 (398)
......++++.+++... .......+++++++..++++|..++-++++|++. |....+.+...+. ..
T Consensus 110 ~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~ 189 (343)
T TIGR02314 110 DNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRR 189 (343)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 11234566777777653 2334458999999999999999999999999999 4444444433333 22
Q ss_pred CCCEEEEEeCChHHHHHhcCC
Q 015891 174 YGERLIITSRNEKLTTEMVGE 194 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~~~~~ 194 (398)
.|.+||++||+.+++..+++.
T Consensus 190 ~g~tiiliTH~~~~v~~~~d~ 210 (343)
T TIGR02314 190 LGLTILLITHEMDVVKRICDC 210 (343)
T ss_pred cCCEEEEEeCCHHHHHHhCCE
Confidence 478999999999988775443
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.77 E-value=8.5e-08 Score=99.62 Aligned_cols=170 Identities=19% Similarity=0.282 Sum_probs=97.6
Q ss_pred CCcccchhhHH---HHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHH
Q 015891 38 ANVHGFANEEL---HLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKR 114 (398)
Q Consensus 38 ~~~vGR~~~~~---~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~ 114 (398)
++|+|.+..+. .+..++.. .....+.|+|++|+||||||+.+++. ....|. .+. ... .... .++.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~----~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~ln-a~~-~~i~-dir~ 95 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA----DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLN-AVL-AGVK-DLRA 95 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eeh-hhh-hhhH-HHHH
Confidence 56899988774 46666643 45667899999999999999999987 444431 111 100 0000 0011
Q ss_pred HHHHcCCCCCCCCCcCCCchHHHHHHHHHHH--hCCCcEEEecCCC--CHHHHHHHHhHcCCCCCCEEEE--EeCChH--
Q 015891 115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQL--IGKRYLIVLDDFE--DMEVCKHLSKVLPRGYGERLII--TSRNEK-- 186 (398)
Q Consensus 115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~gs~IIi--TTR~~~-- 186 (398)
+ .......+ .+++.+|+|||++ +..+.+.|...+. .++.++| ||.+..
T Consensus 96 ~----------------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE--~g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 96 E----------------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE--NGTITLIGATTENPYFE 151 (725)
T ss_pred H----------------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc--CceEEEEEecCCChHhh
Confidence 1 11111111 2356799999998 4455555554443 2444444 334432
Q ss_pred HHHHhcCCCceEEcCCCCChhHHHHHHHhhhC-------CCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 187 LTTEMVGEENLHQLQPLSDQESCWLIYRDSVR-------DKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 187 v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~-------~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
+...+......+.++||+. ++...++.+++. ......+ .+....|++.+.|....+.
T Consensus 152 l~~aL~SR~~v~~l~pLs~-edi~~IL~~~l~~~~~~~g~~~v~I~---deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 152 VNKALVSRSRLFRLKSLSD-EDLHQLLKRALQDKERGYGDRKVDLE---PEAEKHLVDVANGDARSLL 215 (725)
T ss_pred hhhHhhccccceecCCCCH-HHHHHHHHHHHHHHHhhcCCcccCCC---HHHHHHHHHhCCCCHHHHH
Confidence 2222223456899999998 778888877554 2222222 3356677777877655443
No 87
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.77 E-value=2.2e-08 Score=92.04 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=71.3
Q ss_pred HHHHHHHHcCCCCC----CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhHcCCCCCCEEE
Q 015891 111 IVKRILKRLGVDDG----TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKVLPRGYGERLI 179 (398)
Q Consensus 111 ~~~~il~~l~~~~~----~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~l~~~~gs~II 179 (398)
...++++.++++.. ...+.+.+++..++..++-.+..++-|||-|+++.. ..++.|.... ...|..+|
T Consensus 130 ~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~-~e~~~aii 208 (316)
T COG0444 130 RAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQ-REKGTALI 208 (316)
T ss_pred HHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHH-HhcCCEEE
Confidence 45567777888765 345667899999999999999999999999999943 2333333332 35799999
Q ss_pred EEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHH
Q 015891 180 ITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYR 214 (398)
Q Consensus 180 iTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~ 214 (398)
++|||-.+...+++...++.-+.+-+.-....+|.
T Consensus 209 lITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 209 LITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243 (316)
T ss_pred EEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhc
Confidence 99999998888766433333333333233344553
No 88
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.77 E-value=1.9e-07 Score=84.14 Aligned_cols=130 Identities=19% Similarity=0.240 Sum_probs=82.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc---------eEEEEe-----------cCC--------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP---------RIWVCT-----------MSG-------------- 104 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~---------~~~v~~-----------v~~-------------- 104 (398)
.-.+++|.|++|+|||||++.+....... . .|+. ..++.. +..
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~ 84 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLR 84 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccccccc
Confidence 35689999999999999999997642110 0 0110 111110 000
Q ss_pred cc--cHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCC
Q 015891 105 QK--TAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGE 176 (398)
Q Consensus 105 ~~--~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs 176 (398)
.. ........+++.+++.... ......+.+++++..+.+.+..++-++++|++. |....+.+...+. ...+.
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~ 164 (223)
T TIGR03771 85 RPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT 164 (223)
T ss_pred CCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 00 0112345567777775422 223348899999999999999999999999999 4444444444443 23478
Q ss_pred EEEEEeCChHHHHHh
Q 015891 177 RLIITSRNEKLTTEM 191 (398)
Q Consensus 177 ~IIiTTR~~~v~~~~ 191 (398)
.||++||+.+....+
T Consensus 165 tvii~sH~~~~~~~~ 179 (223)
T TIGR03771 165 AILMTTHDLAQAMAT 179 (223)
T ss_pred EEEEEeCCHHHHHHh
Confidence 999999999866654
No 89
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=1.9e-07 Score=83.57 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=83.1
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc------------------ceEEEEecC---CcccH--------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV------------------PRIWVCTMS---GQKTA-------- 108 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~------------------~~~~v~~v~---~~~~~-------- 108 (398)
.. .+++|+|++|+|||||++.+..-... ... |+ ...++..-. ...+.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~ 100 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGL 100 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHH
Confidence 46 89999999999999999999764211 000 10 011111000 00011
Q ss_pred --------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CC
Q 015891 109 --------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RG 173 (398)
Q Consensus 109 --------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~ 173 (398)
.....++++.+++... .......+.+++++..+.+++..++-+++||++. |....+.+...+. ..
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (214)
T cd03297 101 KRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN 180 (214)
T ss_pred hhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 1123456677776542 2233458899999999999999999999999999 4444444444443 22
Q ss_pred CCCEEEEEeCChHHHHHh
Q 015891 174 YGERLIITSRNEKLTTEM 191 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~~ 191 (398)
.|..||++||+.+....+
T Consensus 181 ~~~tiii~sH~~~~~~~~ 198 (214)
T cd03297 181 LNIPVIFVTHDLSEAEYL 198 (214)
T ss_pred cCcEEEEEecCHHHHHHh
Confidence 377899999999877654
No 90
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=7.5e-08 Score=92.62 Aligned_cols=132 Identities=13% Similarity=0.109 Sum_probs=84.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc------------eEEEEe---------cCCc---------c--
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP------------RIWVCT---------MSGQ---------K-- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~------------~~~v~~---------v~~~---------~-- 106 (398)
.-.+++|.|++|+|||||.+.++.-.... . .|+. +.++.. +.++ .
T Consensus 29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (356)
T PRK11650 29 DGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPK 108 (356)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCH
Confidence 34689999999999999999997642110 0 0110 111100 0000 0
Q ss_pred -cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 107 -TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 107 -~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
.......++++.+++... .......+++++++..+.+.|..++-+++||++. |....+.+...+. ...|..+
T Consensus 109 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ti 188 (356)
T PRK11650 109 AEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTS 188 (356)
T ss_pred HHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 112334567777777643 2233458999999999999999999999999999 3333333333332 2347899
Q ss_pred EEEeCChHHHHHhcC
Q 015891 179 IITSRNEKLTTEMVG 193 (398)
Q Consensus 179 IiTTR~~~v~~~~~~ 193 (398)
|++||+...+..+++
T Consensus 189 i~vTHd~~ea~~l~D 203 (356)
T PRK11650 189 LYVTHDQVEAMTLAD 203 (356)
T ss_pred EEEeCCHHHHHHhCC
Confidence 999999887766544
No 91
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.76 E-value=2e-07 Score=83.36 Aligned_cols=132 Identities=18% Similarity=0.140 Sum_probs=83.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc-----------eEEEEec---CCccc---------------H
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP-----------RIWVCTM---SGQKT---------------A 108 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~-----------~~~v~~v---~~~~~---------------~ 108 (398)
..-.+++|.|++|+|||||++.+....... . .|+. +.++..- ....+ .
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~ 114 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRA 114 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcH
Confidence 345689999999999999999997652110 0 0110 1222100 00001 1
Q ss_pred HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEe
Q 015891 109 ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITS 182 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTT 182 (398)
......++..+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++|
T Consensus 115 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~s 194 (214)
T PRK13543 115 KQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTT 194 (214)
T ss_pred HHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 1233456666776532 2223348899999999999999999999999998 4444444444442 23467899999
Q ss_pred CChHHHHHhc
Q 015891 183 RNEKLTTEMV 192 (398)
Q Consensus 183 R~~~v~~~~~ 192 (398)
|+...+..++
T Consensus 195 H~~~~~~~~~ 204 (214)
T PRK13543 195 HGAYAAPPVR 204 (214)
T ss_pred cChhhhhhhc
Confidence 9998777653
No 92
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=1.4e-07 Score=87.63 Aligned_cols=132 Identities=19% Similarity=0.141 Sum_probs=83.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccce-----------EEEEecCCcc---------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVPR-----------IWVCTMSGQK--------------------- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~~-----------~~v~~v~~~~--------------------- 106 (398)
.-.+++|+|++|+|||||++.+..-... ... |+.. .-+.++.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 109 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG 109 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC
Confidence 4579999999999999999999754111 000 0000 0011111110
Q ss_pred ----cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCC
Q 015891 107 ----TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGE 176 (398)
Q Consensus 107 ----~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs 176 (398)
........++..+++... .......+.+++++..+.+++..++-+++||++. |......+...+. ...|.
T Consensus 110 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~ 189 (274)
T PRK13647 110 LDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGK 189 (274)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 011223455666676532 2233458999999999999999999999999999 4444444444432 12378
Q ss_pred EEEEEeCChHHHHHhcC
Q 015891 177 RLIITSRNEKLTTEMVG 193 (398)
Q Consensus 177 ~IIiTTR~~~v~~~~~~ 193 (398)
.||++||+.+.+..+++
T Consensus 190 tili~tH~~~~~~~~~d 206 (274)
T PRK13647 190 TVIVATHDVDLAAEWAD 206 (274)
T ss_pred EEEEEeCCHHHHHHhCC
Confidence 99999999987765433
No 93
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=1.4e-07 Score=88.98 Aligned_cols=82 Identities=17% Similarity=0.228 Sum_probs=58.8
Q ss_pred HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
..+++..+++.. ........+.+++++..+++.+..++-+|+||++. |....+.+...+. ...|.+||++||+
T Consensus 145 ~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 145 AAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 456677778752 23344458999999999999999999999999999 4444444433332 2347899999999
Q ss_pred hHHHHHhcC
Q 015891 185 EKLTTEMVG 193 (398)
Q Consensus 185 ~~v~~~~~~ 193 (398)
.+.+..+++
T Consensus 225 ~~~~~~~ad 233 (305)
T PRK13651 225 LDNVLEWTK 233 (305)
T ss_pred HHHHHHhCC
Confidence 886655433
No 94
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.76 E-value=1.7e-07 Score=83.14 Aligned_cols=130 Identities=14% Similarity=0.127 Sum_probs=83.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc-------------eEEEEe---cCCcc---------------c
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP-------------RIWVCT---MSGQK---------------T 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~-------------~~~v~~---v~~~~---------------~ 107 (398)
.-.+++|.|++|+|||||++.++...... . .|+. ..++.. +.... .
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~ 105 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPG 105 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCcc
Confidence 45689999999999999999997652110 0 0110 111110 00000 1
Q ss_pred HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEE
Q 015891 108 AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIIT 181 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiT 181 (398)
.......+++.+++... .......+.+++++..+.+.+..++-++++|++. |....+.+...+. ...+..||++
T Consensus 106 ~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~ 185 (204)
T PRK13538 106 DDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILT 185 (204)
T ss_pred HHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 11234456777777532 2233448899999999999999999999999999 4444444444443 2346789999
Q ss_pred eCChHHHHHh
Q 015891 182 SRNEKLTTEM 191 (398)
Q Consensus 182 TR~~~v~~~~ 191 (398)
||+......+
T Consensus 186 sh~~~~i~~~ 195 (204)
T PRK13538 186 THQDLPVASD 195 (204)
T ss_pred ecChhhhccC
Confidence 9998887765
No 95
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.76 E-value=1e-07 Score=89.92 Aligned_cols=132 Identities=15% Similarity=0.192 Sum_probs=82.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc-------------ceEEEEe---cCCcccHH-------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV-------------PRIWVCT---MSGQKTAE------------- 109 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~-------------~~~~v~~---v~~~~~~~------------- 109 (398)
.-.+++|.|++|+|||||++.+..-..- .. .|. ...++.. +....+..
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 108 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS 108 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCC
Confidence 4568999999999999999999764210 00 000 0112110 00000111
Q ss_pred -----HHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEE
Q 015891 110 -----SIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERL 178 (398)
Q Consensus 110 -----~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~I 178 (398)
.....++..+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..|
T Consensus 109 ~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~ti 188 (303)
T TIGR01288 109 TREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTI 188 (303)
T ss_pred HHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 122345566666542 2223348999999999999999999999999999 4444444443332 2347899
Q ss_pred EEEeCChHHHHHhcC
Q 015891 179 IITSRNEKLTTEMVG 193 (398)
Q Consensus 179 IiTTR~~~v~~~~~~ 193 (398)
|++||+...+..+++
T Consensus 189 l~~sH~~~~~~~~~d 203 (303)
T TIGR01288 189 LLTTHFMEEAERLCD 203 (303)
T ss_pred EEECCCHHHHHHhCC
Confidence 999999987766543
No 96
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=1.6e-07 Score=93.65 Aligned_cols=198 Identities=17% Similarity=0.151 Sum_probs=111.1
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccce-EEEEecCCcccHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPR-IWVCTMSGQKTAESIVKRIL 116 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~-~~v~~v~~~~~~~~~~~~il 116 (398)
.+++|.+..+..|...+.. ..-...+.++|+.|+||||+|+.+++...-....... .+.. ....... ..+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~---~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~-C~~C~~C----~~i~ 92 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILN---DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT-CEQCTNC----ISFN 92 (507)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC-CCCChHH----HHHh
Confidence 5689999999999988754 2335688999999999999999998762111111000 0000 0000000 0011
Q ss_pred HHcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCCC--HHHHHHHHhHcCC-CCCCEEEE-EeCChHHH
Q 015891 117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFED--MEVCKHLSKVLPR-GYGERLII-TSRNEKLT 188 (398)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~~--~~~~~~l~~~l~~-~~gs~IIi-TTR~~~v~ 188 (398)
......-......+..+.+..+..+... +.+++.++|+||++. ...++.|...+.. .+.+.+|+ ||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 0000000000000112333333333222 234567999999994 4556666666653 33455554 55555565
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
..+......+++.+++. ++....+.+.+...+....+ +.+..|++.++|.+..+.
T Consensus 173 ~tI~SRc~~~ef~~ls~-~el~~~L~~i~~~egi~ie~---eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 173 ATIISRCQRYDLRRLSF-EEIFKLLEYITKQENLKTDI---EALRIIAYKSEGSARDAV 227 (507)
T ss_pred HHHHhcceEEEccCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 55545567899999998 66777887766544433332 356678888998876543
No 97
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.6e-07 Score=80.86 Aligned_cols=130 Identities=20% Similarity=0.242 Sum_probs=90.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCc-----cccc--------------eEEEEecCCc----------------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-----QFVP--------------RIWVCTMSGQ---------------- 105 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-----~F~~--------------~~~v~~v~~~---------------- 105 (398)
..-.+.+|.||+|+|||||+..+..++.+.- .|+. .+|+. +..+
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLa-fQ~P~ei~GV~~~~fLr~a~ 106 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLA-FQYPVEIPGVTNSDFLRAAM 106 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEe-ecCCccCCCeeHHHHHHHHH
Confidence 3456889999999999999999987653321 1221 12332 1100
Q ss_pred ----------ccHHHHHHHHHHHcCCCCC---CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH
Q 015891 106 ----------KTAESIVKRILKRLGVDDG---TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV 169 (398)
Q Consensus 106 ----------~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~ 169 (398)
......+++.+..+++++. ..-....++++..+..+.+.+.-+|-|.|||+++ |.+.++.+...
T Consensus 107 n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~ 186 (251)
T COG0396 107 NARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEG 186 (251)
T ss_pred HhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHH
Confidence 1223455566777777652 1112337889999999999999999999999999 45666666665
Q ss_pred cC--CCCCCEEEEEeCChHHHHHh
Q 015891 170 LP--RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 170 l~--~~~gs~IIiTTR~~~v~~~~ 191 (398)
+. ..+++.+|++||...++..+
T Consensus 187 i~~lr~~~~~~liITHy~rll~~i 210 (251)
T COG0396 187 INALREEGRGVLIITHYQRLLDYI 210 (251)
T ss_pred HHHHhcCCCeEEEEecHHHHHhhc
Confidence 54 46788999999999999886
No 98
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.76 E-value=2.5e-07 Score=95.30 Aligned_cols=176 Identities=11% Similarity=0.082 Sum_probs=100.8
Q ss_pred CCCcccchhhHHHHHHHHhccCC-CCCeeEEEEEcCCCChHHHHHHHHHcCCCC---Ccccc--ceEEEEecCCcccHHH
Q 015891 37 PANVHGFANEELHLQKLLSNRGT-DDQFRAIGVVGVAGVGKTTLCQRIFHKPDV---KTQFV--PRIWVCTMSGQKTAES 110 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~~~-~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~---~~~F~--~~~~v~~v~~~~~~~~ 110 (398)
|+.+.||++++++|...|...-. .....++.|+|++|.|||++++.+.+.... ..... .++++. ...-.....
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCccCCHHH
Confidence 47899999999999998876322 233456789999999999999999765210 11122 134555 455566777
Q ss_pred HHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHh---CCCcEEEecCCCCHH--HHHHHHhHcC--CCCCCEEE--EE
Q 015891 111 IVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLI---GKRYLIVLDDFEDME--VCKHLSKVLP--RGYGERLI--IT 181 (398)
Q Consensus 111 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVLDdv~~~~--~~~~l~~~l~--~~~gs~II--iT 181 (398)
++..|..+|....+. ...........+...+. ....+|||||++... ..+.|..++. ...+++|+ .+
T Consensus 833 IYqvI~qqL~g~~P~----~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGI 908 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPP----NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAI 908 (1164)
T ss_pred HHHHHHHHHcCCCCC----ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEe
Confidence 788888887433211 11122223333443332 124599999999431 2223333332 23455544 34
Q ss_pred eCChHHHHH----hcC--CCceEEcCCCCChhHHHHHHHhhhC
Q 015891 182 SRNEKLTTE----MVG--EENLHQLQPLSDQESCWLIYRDSVR 218 (398)
Q Consensus 182 TR~~~v~~~----~~~--~~~~~~l~~L~~~e~~~~l~~~~~~ 218 (398)
|.+.++... +.. ....+.+.|.+. +....++.+.+.
T Consensus 909 SNdlDLperLdPRLRSRLg~eeIvF~PYTa-EQL~dILk~RAe 950 (1164)
T PTZ00112 909 SNTMDLPERLIPRCRSRLAFGRLVFSPYKG-DEIEKIIKERLE 950 (1164)
T ss_pred cCchhcchhhhhhhhhccccccccCCCCCH-HHHHHHHHHHHH
Confidence 543322211 111 123466788888 667777777554
No 99
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.75 E-value=6.4e-08 Score=86.42 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=83.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc------------eEEEEecC---Cccc---------------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP------------RIWVCTMS---GQKT--------------- 107 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~------------~~~v~~v~---~~~~--------------- 107 (398)
..-.+++|.|++|+|||||++.+..-... .. .++. ..++..-. ...+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 101 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKL 101 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCc
Confidence 34578999999999999999999764211 00 0000 11111000 0000
Q ss_pred ---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCE
Q 015891 108 ---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGER 177 (398)
Q Consensus 108 ---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~ 177 (398)
.......++..+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t 181 (211)
T cd03298 102 TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMT 181 (211)
T ss_pred cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 12234556666776532 2233458999999999999999999999999999 4444444444443 224788
Q ss_pred EEEEeCChHHHHHh
Q 015891 178 LIITSRNEKLTTEM 191 (398)
Q Consensus 178 IIiTTR~~~v~~~~ 191 (398)
||++||+...+..+
T Consensus 182 ii~~sH~~~~~~~~ 195 (211)
T cd03298 182 VLMVTHQPEDAKRL 195 (211)
T ss_pred EEEEecCHHHHHhh
Confidence 99999999877664
No 100
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=2.6e-07 Score=92.85 Aligned_cols=179 Identities=18% Similarity=0.170 Sum_probs=104.9
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCc-------------------cccceEE
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-------------------QFVPRIW 98 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~~~ 98 (398)
++++|.+..++.|...+.. ..-...+.++|+.|+||||+|+.+++...-.. .|...++
T Consensus 16 ~diiGq~~~v~~L~~~i~~---~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 16 AEVAGQQHALNSLVHALET---QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 5789999999999998864 22345688999999999999999987521100 0111111
Q ss_pred EEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHH-HHhCCCcEEEecCCC--CHHHHHHHHhHcCCC-C
Q 015891 99 VCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQ-QLIGKRYLIVLDDFE--DMEVCKHLSKVLPRG-Y 174 (398)
Q Consensus 99 v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~-~ 174 (398)
+. ....... .....+...+.. -..+++.++|+||++ +....+.|...+... .
T Consensus 93 id-aas~~gv-----------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~ 148 (546)
T PRK14957 93 ID-AASRTGV-----------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPE 148 (546)
T ss_pred ee-cccccCH-----------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCC
Confidence 11 1000000 111111111111 123466799999998 445666666666533 3
Q ss_pred CCEEEEEe-CChHHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 175 GERLIITS-RNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 175 gs~IIiTT-R~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
.+++|++| ....+...+......+++.+++. ++....+.+.+...+....+ .....|++.++|-+..+.
T Consensus 149 ~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~-~eI~~~L~~il~~egi~~e~---~Al~~Ia~~s~GdlR~al 218 (546)
T PRK14957 149 YVKFILATTDYHKIPVTILSRCIQLHLKHISQ-ADIKDQLKIILAKENINSDE---QSLEYIAYHAKGSLRDAL 218 (546)
T ss_pred CceEEEEECChhhhhhhHHHheeeEEeCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 45555444 44445544445578999999998 55666666654433332222 256678888888776443
No 101
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.75 E-value=9.8e-08 Score=87.51 Aligned_cols=137 Identities=17% Similarity=0.187 Sum_probs=85.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccceEEEEecCCcc--------cH-----------HHHHHHHHHHc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVPRIWVCTMSGQK--------TA-----------ESIVKRILKRL 119 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~~~~v~~v~~~~--------~~-----------~~~~~~il~~l 119 (398)
.-.+++|+|++|+|||||++.++.-... ... +.....+.++.+.. +. ......+++.+
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRV 108 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHc
Confidence 4578999999999999999999865211 110 11100011111110 01 12234566677
Q ss_pred CCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhc
Q 015891 120 GVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 120 ~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~ 192 (398)
++... .......+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+...+..++
T Consensus 109 gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~ 188 (251)
T PRK09544 109 QAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKT 188 (251)
T ss_pred CChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 76542 2223347899999999999999999999999999 4444444444432 223788999999998776643
Q ss_pred CCCceEEc
Q 015891 193 GEENLHQL 200 (398)
Q Consensus 193 ~~~~~~~l 200 (398)
++++.+
T Consensus 189 --d~i~~l 194 (251)
T PRK09544 189 --DEVLCL 194 (251)
T ss_pred --CEEEEE
Confidence 344444
No 102
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=3.1e-07 Score=91.24 Aligned_cols=190 Identities=16% Similarity=0.225 Sum_probs=101.3
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc--ccceEEEEecCCcccHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ--FVPRIWVCTMSGQKTAESIVKRI 115 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~~v~~v~~~~~~~~~~~~i 115 (398)
+++||.+...+.|...+.. ..-...+.++|++|+||||+|+.+++...-... +.. +..+ .....+
T Consensus 14 ~divGq~~i~~~L~~~i~~---~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~p-c~~c---------~~c~~i 80 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKK---NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEP-CNEC---------RACRSI 80 (472)
T ss_pred HHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCC-Cccc---------HHHHHH
Confidence 6789999888888888754 223356899999999999999999876211110 100 0000 000000
Q ss_pred HHHcCCCCCCCCCcCCCchHHHHHHHHHH-----HhCCCcEEEecCCCCH--HHHHHHHhHcCCCC-CCEEEEEeCC-hH
Q 015891 116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQ-----LIGKRYLIVLDDFEDM--EVCKHLSKVLPRGY-GERLIITSRN-EK 186 (398)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~-gs~IIiTTR~-~~ 186 (398)
...-.............+.+..+. +... ..+++.++|+||++.. ...+.|...+...+ ...+|++|.+ ..
T Consensus 81 ~~g~~~dv~el~aa~~~gid~iR~-i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~k 159 (472)
T PRK14962 81 DEGTFMDVIELDAASNRGIDEIRK-IRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEK 159 (472)
T ss_pred hcCCCCccEEEeCcccCCHHHHHH-HHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHh
Confidence 000000000000000112222221 2222 1245679999999843 44455555554333 3444444433 44
Q ss_pred HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891 187 LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED 245 (398)
Q Consensus 187 v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 245 (398)
+...+......+++.+++. ++....+.+.+...+...++ +.+..|++.++|-...
T Consensus 160 l~~~L~SR~~vv~f~~l~~-~el~~~L~~i~~~egi~i~~---eal~~Ia~~s~GdlR~ 214 (472)
T PRK14962 160 VPPTIISRCQVIEFRNISD-ELIIKRLQEVAEAEGIEIDR---EALSFIAKRASGGLRD 214 (472)
T ss_pred hhHHHhcCcEEEEECCccH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhCCCHHH
Confidence 5555545667899999999 56777777755443333333 3566778777665543
No 103
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=2.7e-07 Score=94.18 Aligned_cols=203 Identities=12% Similarity=0.116 Sum_probs=109.9
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
.++||.+..++.|...+.. ..-...+.++|+.|+||||+|+.+++...-...+..-.|..........-...+.+..
T Consensus 16 ~eivGQe~i~~~L~~~i~~---~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRM---DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 6789999999999998854 2234568899999999999999998762211111101111101111110011111111
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCCC--HHHHHHHHhHcCCCC-CCEEEEEe-CChHHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFED--MEVCKHLSKVLPRGY-GERLIITS-RNEKLTT 189 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~-gs~IIiTT-R~~~v~~ 189 (398)
.-..+............++++..+... +.+++-++|+||++. ....+.|...+..-+ .+.+|++| +...+..
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 100000000000112234444333222 234567899999984 355566666665332 44444444 4455555
Q ss_pred HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
.+......+++.+++. ++....+.+.+...+...++ +.+..|++.++|....+.
T Consensus 173 TI~SRc~~vef~~l~~-~ei~~~L~~i~~~egi~I~~---eal~~La~~s~Gdlr~al 226 (620)
T PRK14954 173 TIASRCQRFNFKRIPL-DEIQSQLQMICRAEGIQIDA---DALQLIARKAQGSMRDAQ 226 (620)
T ss_pred HHHhhceEEecCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhCCCHHHHH
Confidence 5556678999999998 55666666655433332223 266778888888665443
No 104
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=3.4e-08 Score=95.28 Aligned_cols=130 Identities=22% Similarity=0.237 Sum_probs=88.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc-----eEEEEe---c-----------CCc-----c-cHHHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP-----RIWVCT---M-----------SGQ-----K-TAESIVKRIL 116 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-----~~~v~~---v-----------~~~-----~-~~~~~~~~il 116 (398)
.-+..|++|.+|+|||||.+++.+. .-..|.. ..++.. + .+. . ...++...++
T Consensus 105 ~GrRYGLvGrNG~GKsTLLRaia~~--~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L 182 (582)
T KOG0062|consen 105 RGRRYGLVGRNGIGKSTLLRAIANG--QVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKIL 182 (582)
T ss_pred cccccceeCCCCCcHHHHHHHHHhc--CcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHH
Confidence 3567899999999999999999984 2333332 111110 0 001 0 2233444477
Q ss_pred HHcCCCCCC--CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH---HHHHHHHhHcCCCCCCEEEEEeCChHHHHHh
Q 015891 117 KRLGVDDGT--TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM---EVCKHLSKVLPRGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 117 ~~l~~~~~~--~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~---~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~ 191 (398)
..+|+..+. .+..+.+++-+.+..|++++-.++-||+||++++. .....|..++... +.++||.|||+.++..+
T Consensus 183 ~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~-~~T~liVSHDr~FLn~V 261 (582)
T KOG0062|consen 183 AGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW-KITSLIVSHDRNFLNTV 261 (582)
T ss_pred HhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC-CceEEEEeccHHHHHHH
Confidence 788887642 23334788999999999999999999999999953 3334455555433 47899999999998876
Q ss_pred cCC
Q 015891 192 VGE 194 (398)
Q Consensus 192 ~~~ 194 (398)
+..
T Consensus 262 ~td 264 (582)
T KOG0062|consen 262 CTD 264 (582)
T ss_pred HHH
Confidence 543
No 105
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.74 E-value=1.1e-07 Score=82.04 Aligned_cols=129 Identities=19% Similarity=0.258 Sum_probs=77.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecC-CcccHHHHHHHHHHHcCCC--CCCC---CCcC--CCc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMS-GQKTAESIVKRILKRLGVD--DGTT---NSFE--GQG 133 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~-~~~~~~~~~~~il~~l~~~--~~~~---~~~~--~~~ 133 (398)
.-.+++|.|++|+|||||++.++.- . ....+.+++.... ........ ...++.- .... ...+ .+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~--~-~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~ 99 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGL--L-RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSG 99 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc--c-CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCH
Confidence 4568999999999999999999875 2 2223334333110 00111111 1111110 0000 0000 578
Q ss_pred hHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 134 LAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 134 ~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+...... .++++.+
T Consensus 100 G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~---~d~v~~l 168 (173)
T cd03246 100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS---ADRILVL 168 (173)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh---CCEEEEE
Confidence 9999999999999999999999999 4444444444432 2347899999999887643 2445544
No 106
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.74 E-value=1.7e-07 Score=85.36 Aligned_cols=131 Identities=18% Similarity=0.211 Sum_probs=88.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC---ccccceEEEEecCC----------------------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK---TQFVPRIWVCTMSG---------------------------------- 104 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~---~~F~~~~~v~~v~~---------------------------------- 104 (398)
.-..+++.|++|+|||||.+.++.=+.-. -.|....|.+ +++
T Consensus 27 ~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D-~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~ 105 (345)
T COG1118 27 SGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFD-VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR 105 (345)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccc-hhccchhhcceeEEEechhhcccchHHhhhhhccccc
Confidence 46789999999999999999996431100 0122222222 110
Q ss_pred -----cccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 105 -----QKTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 105 -----~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
......-..++++.+.+..- ...+...+++++++..++++|.-.|-+|+||++. |..+...++..+. .
T Consensus 106 ~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~ 185 (345)
T COG1118 106 KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHD 185 (345)
T ss_pred ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHH
Confidence 11233445566666655542 3345568999999999999999999999999998 5555555555554 3
Q ss_pred CCCCEEEEEeCChHHHHHhcC
Q 015891 173 GYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~~ 193 (398)
..|...+++|||...+..+.+
T Consensus 186 ~~~~ttvfVTHD~eea~~lad 206 (345)
T COG1118 186 RLGVTTVFVTHDQEEALELAD 206 (345)
T ss_pred hhCceEEEEeCCHHHHHhhcc
Confidence 448889999999987777543
No 107
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.74 E-value=1.4e-07 Score=85.31 Aligned_cols=137 Identities=17% Similarity=0.151 Sum_probs=85.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc---------eEEEEe---cCCcccH------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP---------RIWVCT---MSGQKTA------------------ 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~---------~~~v~~---v~~~~~~------------------ 108 (398)
.-.+++|+|++|+|||||++.++.-... ... |+. ..++.. +....+.
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~ 89 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKS 89 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHH
Confidence 3468999999999999999999765211 000 100 011110 0000010
Q ss_pred --HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEE
Q 015891 109 --ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLI 179 (398)
Q Consensus 109 --~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~II 179 (398)
......+++.+++... .......+.+++++..+.+.+..++-+++||++. |......+...+. ...+..||
T Consensus 90 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii 169 (230)
T TIGR01184 90 ERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVL 169 (230)
T ss_pred HHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 1123455666676532 2223348999999999999999999999999999 4444444444443 22477899
Q ss_pred EEeCChHHHHHhcCCCceEEc
Q 015891 180 ITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 180 iTTR~~~v~~~~~~~~~~~~l 200 (398)
++||+......++ ++++.+
T Consensus 170 ~~sH~~~~~~~~~--d~v~~l 188 (230)
T TIGR01184 170 MVTHDVDEALLLS--DRVVML 188 (230)
T ss_pred EEeCCHHHHHHhc--CEEEEE
Confidence 9999988766643 344444
No 108
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.74 E-value=4.9e-08 Score=92.16 Aligned_cols=138 Identities=17% Similarity=0.205 Sum_probs=89.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC----------------------CccccceEEEEecC--Cc------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV----------------------KTQFVPRIWVCTMS--GQ------------ 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~----------------------~~~F~~~~~v~~v~--~~------------ 105 (398)
.-.++++.||+|+|||||.+.++.=... .--|...+.+..++ ++
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~ 109 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLK 109 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCC
Confidence 3468999999999999999999542111 11121111110011 11
Q ss_pred -ccHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH---HHHHHHHhHcC---CCCCCE
Q 015891 106 -KTAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM---EVCKHLSKVLP---RGYGER 177 (398)
Q Consensus 106 -~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~---~~~~~l~~~l~---~~~gs~ 177 (398)
....+...+.++.+++.... ..+.+.+++++++..+++.|..++-+++||++-+. ...+.++..+. ...|-+
T Consensus 110 ~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT 189 (352)
T COG3842 110 KAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189 (352)
T ss_pred HHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCe
Confidence 12445677788888877643 33445899999999999999999999999999843 32233322221 344889
Q ss_pred EEEEeCChHHHHHhcCCCceEE
Q 015891 178 LIITSRNEKLTTEMVGEENLHQ 199 (398)
Q Consensus 178 IIiTTR~~~v~~~~~~~~~~~~ 199 (398)
.|+.|||..-+..+.+..-+++
T Consensus 190 ~i~VTHDqeEAl~msDrI~Vm~ 211 (352)
T COG3842 190 FVYVTHDQEEALAMSDRIAVMN 211 (352)
T ss_pred EEEEECCHHHHhhhccceEEcc
Confidence 9999999988887755433333
No 109
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=1.3e-07 Score=85.83 Aligned_cols=131 Identities=17% Similarity=0.218 Sum_probs=83.1
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc-----------------ceEEEEec---CCcccH---------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV-----------------PRIWVCTM---SGQKTA--------- 108 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~-----------------~~~~v~~v---~~~~~~--------- 108 (398)
..-.+++|+|++|+|||||++.++.-.... . .|+ .+.++..- ....+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 108 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLE 108 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHH
Confidence 346789999999999999999997542110 0 010 11111100 000011
Q ss_pred ---------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 109 ---------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 109 ---------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
.....++++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. .
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 188 (233)
T cd03258 109 IAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR 188 (233)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHH
Confidence 1123455666776542 2223347899999999999999999999999999 4444445544443 2
Q ss_pred CCCCEEEEEeCChHHHHHh
Q 015891 173 GYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~ 191 (398)
..|..||++||+.+.+..+
T Consensus 189 ~~~~tvii~sH~~~~~~~~ 207 (233)
T cd03258 189 ELGLTIVLITHEMEVVKRI 207 (233)
T ss_pred HcCCEEEEEeCCHHHHHHh
Confidence 2378999999998877654
No 110
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=2.3e-07 Score=94.38 Aligned_cols=199 Identities=15% Similarity=0.172 Sum_probs=110.6
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc--cceEEEEecCCcccHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF--VPRIWVCTMSGQKTAESIVKRI 115 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~~v~~v~~~~~~~~~~~~i 115 (398)
+++||-+..++.|..++.. ..-...+.++|+.|+||||+|+.+.+...-.... .... ...+..-.....+
T Consensus 16 ~dviGQe~vv~~L~~~l~~---~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~-----~~pCg~C~~C~~i 87 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQ---QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT-----ATPCGVCQACRDI 87 (618)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC-----CCCCCccHHHHHH
Confidence 6789999999999999864 2334677999999999999999997652111100 0000 0000000111111
Q ss_pred HHHcCCCCCCCCCcCCCchHHHHHHHHHHH----hCCCcEEEecCCC--CHHHHHHHHhHcCCC-CCCEEEEEeCC-hHH
Q 015891 116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQL----IGKRYLIVLDDFE--DMEVCKHLSKVLPRG-YGERLIITSRN-EKL 187 (398)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~-~gs~IIiTTR~-~~v 187 (398)
...-..........+..+.+..+..+.... .++.-++|||+++ +....+.|...+..- ..+++|++|.+ ..+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 100000000000001123333333332211 2345699999999 456666666666532 34556655544 455
Q ss_pred HHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 188 TTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 188 ~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
...+......+++++++. ++....+.+.+...+...++ +.+..|++.++|-+..+..
T Consensus 168 l~TIlSRc~~~~f~~Ls~-eei~~~L~~i~~~egi~ie~---~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAP-ETVLEHLTQVLAAENVPAEP---QALRLLARAARGSMRDALS 224 (618)
T ss_pred hHHHHHhceeeecCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 544545678899999998 66777777665444433322 3567788888887766544
No 111
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.74 E-value=1.5e-07 Score=83.85 Aligned_cols=127 Identities=20% Similarity=0.192 Sum_probs=82.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--c------------cceEEEEecCCc------ccH------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--F------------VPRIWVCTMSGQ------KTA------------ 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F------------~~~~~v~~v~~~------~~~------------ 108 (398)
.-.+++|.|++|+|||||++.++..... ... + ....++ .+. .+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~---~q~~~~~~~~tv~e~l~~~~~~~~ 101 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL---IEAPGFYPNLTARENLRLLARLLG 101 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe---cCCCccCccCcHHHHHHHHHHhcC
Confidence 4578999999999999999999754110 000 0 011111 111 011
Q ss_pred --HHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEE
Q 015891 109 --ESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLII 180 (398)
Q Consensus 109 --~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIi 180 (398)
......+++.+++.... ......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||+
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 181 (208)
T cd03268 102 IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI 181 (208)
T ss_pred CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 12234566666665421 223347899999999999999999999999999 4444444444443 124788999
Q ss_pred EeCChHHHHHh
Q 015891 181 TSRNEKLTTEM 191 (398)
Q Consensus 181 TTR~~~v~~~~ 191 (398)
+||+...+..+
T Consensus 182 ~tH~~~~~~~~ 192 (208)
T cd03268 182 SSHLLSEIQKV 192 (208)
T ss_pred EcCCHHHHHHh
Confidence 99999877664
No 112
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.73 E-value=1.6e-07 Score=90.90 Aligned_cols=132 Identities=14% Similarity=0.145 Sum_probs=83.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc------------ceEEEEe---cCCccc----------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV------------PRIWVCT---MSGQKT---------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~------------~~~~v~~---v~~~~~---------------- 107 (398)
.-.+++|+|++|+|||||++.++.-.... . .|+ .+.++.. +....+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~ 107 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 107 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCH
Confidence 35689999999999999999997642110 0 010 0111110 000000
Q ss_pred --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
......++++.+++... .......+++++++..+.+.|..++-+|+||++. |....+.+...+. ...+..|
T Consensus 108 ~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tv 187 (369)
T PRK11000 108 EEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187 (369)
T ss_pred HHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEE
Confidence 11234566777777642 2233458999999999999999999999999999 4444444433332 2237889
Q ss_pred EEEeCChHHHHHhcC
Q 015891 179 IITSRNEKLTTEMVG 193 (398)
Q Consensus 179 IiTTR~~~v~~~~~~ 193 (398)
|++||+.+.+..+++
T Consensus 188 I~vTHd~~~~~~~~d 202 (369)
T PRK11000 188 IYVTHDQVEAMTLAD 202 (369)
T ss_pred EEEeCCHHHHHHhCC
Confidence 999999987766533
No 113
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=1.3e-07 Score=96.33 Aligned_cols=195 Identities=16% Similarity=0.170 Sum_probs=109.2
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHH-HH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKR-IL 116 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~-il 116 (398)
+++||.+..++.|..++.. ..-...+.++|+.|+||||+|+.+.+...-...... .. .........+-.. ..
T Consensus 16 ddIIGQe~vv~~L~~ai~~---~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~---~p-Cg~C~sCr~i~~g~~~ 88 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDE---GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHG---EP-CGVCQSCTQIDAGRYV 88 (709)
T ss_pred HHHcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCC---CC-CcccHHHHHHhccCcc
Confidence 6789999999999999964 223567899999999999999999876211111000 00 0000000000000 00
Q ss_pred HHcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCCh-HHH
Q 015891 117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNE-KLT 188 (398)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~-~v~ 188 (398)
+.+.+.. ....+.+.++..+... ..++..++|+||++. ....+.|...+. ....+++|++|.+. .+.
T Consensus 89 DvlEida-----As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 89 DLLEIDA-----ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ceEEEec-----cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 0000000 0112223333333221 234567999999984 344455555554 23456677666553 343
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
..+.+....|++.+++. ++....+.+.+...+....+ +.+..|++.++|.+..+..
T Consensus 164 ~TIrSRC~~f~f~~Ls~-eeI~~~L~~Il~kEgi~id~---eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTA-QQVADHLAHVLDSEKIAYEP---PALQLLGRAAAGSMRDALS 219 (709)
T ss_pred hHHHHHHhhhhcCCCCH-HHHHHHHHHHHHHcCCCcCH---HHHHHHHHHhCCCHHHHHH
Confidence 33334456788999998 66777777766554433322 3677888999998876654
No 114
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.73 E-value=3.1e-08 Score=85.49 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=61.1
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCCCH------HHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEcCC
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM------EVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQP 202 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~------~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~ 202 (398)
..++++++++-.+++.++-+|-+|++|++.+. ...+.+...+. ..-+|||.||+.+-+..+.+....+.++.
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk--~~yTIviVTHnmqQAaRvSD~taFf~~G~ 225 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK--KKYTIVIVTHNMQQAARVSDYTAFFYLGE 225 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH--hccEEEEEeCCHHHHHHHhHhhhhhcccE
Confidence 34899999999999999999999999999843 33333333332 56789999999988877765555566666
Q ss_pred CCChhHHHHHHH
Q 015891 203 LSDQESCWLIYR 214 (398)
Q Consensus 203 L~~~e~~~~l~~ 214 (398)
|-+......+|.
T Consensus 226 LvE~g~T~~iF~ 237 (253)
T COG1117 226 LVEFGPTDKIFT 237 (253)
T ss_pred EEEEcCHHhhhc
Confidence 665455556664
No 115
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.73 E-value=1.9e-07 Score=83.76 Aligned_cols=128 Identities=19% Similarity=0.223 Sum_probs=82.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc------------------ceEEEEec---CCccc----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV------------------PRIWVCTM---SGQKT---------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~------------------~~~~v~~v---~~~~~---------- 107 (398)
.-.+++|+|++|+|||||++.++.-.... . .|+ .+.++..- ....+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 108 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL 108 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHh
Confidence 45689999999999999999997542110 0 000 11111100 00000
Q ss_pred --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891 108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG 173 (398)
Q Consensus 108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~ 173 (398)
.......++..+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ..
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 188 (218)
T cd03255 109 LAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNK 188 (218)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 11234566777777542 2223348899999999999999999999999999 4444444444443 12
Q ss_pred -CCCEEEEEeCChHHHH
Q 015891 174 -YGERLIITSRNEKLTT 189 (398)
Q Consensus 174 -~gs~IIiTTR~~~v~~ 189 (398)
.+..||++||+.....
T Consensus 189 ~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 189 EAGTTIVVVTHDPELAE 205 (218)
T ss_pred hcCCeEEEEECCHHHHh
Confidence 4788999999988765
No 116
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=2e-07 Score=87.25 Aligned_cols=132 Identities=18% Similarity=0.182 Sum_probs=83.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc---------------eEEEEecCCcc-----------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP---------------RIWVCTMSGQK----------------- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~---------------~~~v~~v~~~~----------------- 106 (398)
.-.+++|+|++|+|||||++.+..-.... . .|+. ...+.++.+..
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~ 110 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP 110 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHH
Confidence 45689999999999999999997541110 0 0000 00011111110
Q ss_pred --------cHHHHHHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891 107 --------TAESIVKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-- 171 (398)
Q Consensus 107 --------~~~~~~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-- 171 (398)
.......++++.+++.. ........+.+++++..+.+.+..++-+++||++. |......+...+.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l 190 (288)
T PRK13643 111 QNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI 190 (288)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 01123445566677742 23334458999999999999999999999999999 4444444443432
Q ss_pred CCCCCEEEEEeCChHHHHHhcC
Q 015891 172 RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...|.+||++||+.+.+..+++
T Consensus 191 ~~~g~til~vtHd~~~~~~~~d 212 (288)
T PRK13643 191 HQSGQTVVLVTHLMDDVADYAD 212 (288)
T ss_pred HHCCCEEEEEecCHHHHHHhCC
Confidence 2247899999999987765433
No 117
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=1.6e-07 Score=90.08 Aligned_cols=132 Identities=16% Similarity=0.229 Sum_probs=84.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc-----------------ceEEEEe---cCCccc-----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV-----------------PRIWVCT---MSGQKT----------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~-----------------~~~~v~~---v~~~~~----------- 107 (398)
.-.+++|+|++|+|||||++.+..-.... . .|+ .+.++.. +....+
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~ 109 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLEL 109 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHH
Confidence 45689999999999999999997642100 0 000 0111110 000000
Q ss_pred -------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CC
Q 015891 108 -------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RG 173 (398)
Q Consensus 108 -------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~ 173 (398)
.......+++.+++... .......+.+++++..+.+.+..++-+++||++. |......+...+. ..
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~ 189 (343)
T PRK11153 110 AGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE 189 (343)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 11234456777777543 2233458999999999999999999999999999 4444444444443 22
Q ss_pred CCCEEEEEeCChHHHHHhcC
Q 015891 174 YGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~~~~ 193 (398)
.|.+||++||+.+.+..+++
T Consensus 190 ~g~tiilvtH~~~~i~~~~d 209 (343)
T PRK11153 190 LGLTIVLITHEMDVVKRICD 209 (343)
T ss_pred cCCEEEEEeCCHHHHHHhCC
Confidence 37899999999988776543
No 118
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=2e-07 Score=94.92 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=59.3
Q ss_pred HHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChH
Q 015891 112 VKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEK 186 (398)
Q Consensus 112 ~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~ 186 (398)
...++..+++... .......+++++++..+++.+..++-+++||++. |....+.+...+. ..+..||++||+..
T Consensus 135 ~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~-~~~~tiiivsHd~~ 213 (530)
T PRK15064 135 AGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN-ERNSTMIIISHDRH 213 (530)
T ss_pred HHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH-hCCCeEEEEeCCHH
Confidence 3456667777542 1233458999999999999999999999999999 4455555555553 24678999999998
Q ss_pred HHHHhcC
Q 015891 187 LTTEMVG 193 (398)
Q Consensus 187 v~~~~~~ 193 (398)
.+..+++
T Consensus 214 ~~~~~~d 220 (530)
T PRK15064 214 FLNSVCT 220 (530)
T ss_pred HHHhhcc
Confidence 8766543
No 119
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.73 E-value=1.8e-07 Score=85.04 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=84.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc-------------ceEEEE-e---cCCcccH-------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV-------------PRIWVC-T---MSGQKTA------------- 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~-------------~~~~v~-~---v~~~~~~------------- 108 (398)
.-.+++|.|++|+|||||++.++..... ... |+ ...++. . +....+.
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~ 125 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDL 125 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCC
Confidence 4578999999999999999999764210 000 00 011110 0 0000011
Q ss_pred -----HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCC
Q 015891 109 -----ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGE 176 (398)
Q Consensus 109 -----~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs 176 (398)
......+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+.
T Consensus 126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 205 (236)
T cd03267 126 PPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGT 205 (236)
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 1122345566666432 2222347899999999999999999999999999 4444444444443 22478
Q ss_pred EEEEEeCChHHHHHhcCCCceEEc
Q 015891 177 RLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 177 ~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
.||++||+...+..++ ++++.+
T Consensus 206 tiiivsH~~~~~~~~~--d~i~~l 227 (236)
T cd03267 206 TVLLTSHYMKDIEALA--RRVLVI 227 (236)
T ss_pred EEEEEecCHHHHHHhC--CEEEEE
Confidence 9999999998776643 344444
No 120
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.72 E-value=2.6e-07 Score=85.83 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=83.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc--------eEEEEecCCc-------------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP--------RIWVCTMSGQ------------------------- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~--------~~~v~~v~~~------------------------- 105 (398)
.-.+++|+|++|+|||||++.+...... ... |+. ...+.++.+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~ 111 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGW 111 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccc
Confidence 4568999999999999999999754210 000 100 0001111110
Q ss_pred -----ccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891 106 -----KTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY 174 (398)
Q Consensus 106 -----~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~ 174 (398)
.........+++.+++... .......+.+++++..+.+++..++-++++|++. |....+.+...+. ...
T Consensus 112 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~ 191 (272)
T PRK15056 112 LRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE 191 (272)
T ss_pred ccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence 0012234556677777542 2223348899999999999999999999999999 4444444444443 224
Q ss_pred CCEEEEEeCChHHHHHhcC
Q 015891 175 GERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~~ 193 (398)
|..||++||+.+.+..+++
T Consensus 192 g~tviivsH~~~~~~~~~d 210 (272)
T PRK15056 192 GKTMLVSTHNLGSVTEFCD 210 (272)
T ss_pred CCEEEEEeCCHHHHHHhCC
Confidence 7789999999877665433
No 121
>PRK10908 cell division protein FtsE; Provisional
Probab=98.72 E-value=5.4e-08 Score=87.62 Aligned_cols=138 Identities=14% Similarity=0.168 Sum_probs=85.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccce--------------EEEEecCCcc------cH---------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVPR--------------IWVCTMSGQK------TA--------- 108 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~~--------------~~v~~v~~~~------~~--------- 108 (398)
..-.+++|+|++|+|||||++.++..... ... |+.. ..+.++.+.. +.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 105 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLI 105 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHH
Confidence 35678999999999999999999754210 000 1000 0011111110 00
Q ss_pred ---------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891 109 ---------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG 173 (398)
Q Consensus 109 ---------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~ 173 (398)
......+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ..
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (222)
T PRK10908 106 IAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR 185 (222)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 1112355666666542 2223458899999999999999999999999999 4444344443333 23
Q ss_pred CCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 174 YGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
.+..||++||+.+....++ ++++.+
T Consensus 186 ~~~tiii~sH~~~~~~~~~--d~i~~l 210 (222)
T PRK10908 186 VGVTVLMATHDIGLISRRS--YRMLTL 210 (222)
T ss_pred CCCEEEEEeCCHHHHHHhC--CEEEEE
Confidence 4789999999998777643 344444
No 122
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.72 E-value=3.3e-07 Score=81.49 Aligned_cols=128 Identities=17% Similarity=0.210 Sum_probs=80.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc------------------ceEEEEec---CCccc----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV------------------PRIWVCTM---SGQKT---------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~------------------~~~~v~~v---~~~~~---------- 107 (398)
.-.+++|+|++|+|||||++.++.-... .. .|+ ...++..- ....+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~ 102 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLK 102 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHH
Confidence 3468999999999999999999764210 00 000 01111100 00001
Q ss_pred --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891 108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG 173 (398)
Q Consensus 108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~ 173 (398)
..+....+++.+++... .......+.++.++..+.+.+..++-+++||++. |....+.+...+. ..
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 182 (206)
T TIGR03608 103 YKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND 182 (206)
T ss_pred hcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh
Confidence 11223456777776442 2223448899999999999999999999999999 4444444444443 22
Q ss_pred CCCEEEEEeCChHHHH
Q 015891 174 YGERLIITSRNEKLTT 189 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~ 189 (398)
.+..||++||+.....
T Consensus 183 ~~~tii~~sh~~~~~~ 198 (206)
T TIGR03608 183 EGKTIIIVTHDPEVAK 198 (206)
T ss_pred cCCEEEEEeCCHHHHh
Confidence 4789999999987654
No 123
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.72 E-value=2e-07 Score=84.73 Aligned_cols=136 Identities=17% Similarity=0.179 Sum_probs=85.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccce----------EEEEecCCcc------c---------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPR----------IWVCTMSGQK------T--------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~----------~~v~~v~~~~------~--------------- 107 (398)
.-.+++|+|++|+|||||++.++..... .. .++.. ..+.++.+.. +
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~ 105 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS 105 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCC
Confidence 4578999999999999999999754210 00 01000 0011111110 0
Q ss_pred ---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCE
Q 015891 108 ---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGER 177 (398)
Q Consensus 108 ---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~ 177 (398)
.......+++.+++... .......+.++.++..+.+.+..++-+++||++. |....+.+...+. ...|..
T Consensus 106 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t 185 (236)
T TIGR03864 106 RAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLS 185 (236)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 11123456666776542 2223348899999999999999999999999998 4444444444443 124788
Q ss_pred EEEEeCChHHHHHhcCCCceEEc
Q 015891 178 LIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 178 IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
||++||+.+.+.. .++++.+
T Consensus 186 iii~sH~~~~~~~---~d~i~~l 205 (236)
T TIGR03864 186 VLWATHLVDEIEA---DDRLVVL 205 (236)
T ss_pred EEEEecChhhHhh---CCEEEEE
Confidence 9999999987753 3445554
No 124
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.72 E-value=3.4e-07 Score=82.30 Aligned_cols=136 Identities=15% Similarity=0.248 Sum_probs=85.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cc------------------cceEEEEec---CCccc----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QF------------------VPRIWVCTM---SGQKT---------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F------------------~~~~~v~~v---~~~~~---------- 107 (398)
.-.+++|.|++|+|||||++.++..... .. .| ....++..- ....+
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 109 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL 109 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence 4568999999999999999999764110 00 00 011222100 00001
Q ss_pred --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
......+++..+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. .
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 189 (221)
T TIGR02211 110 IGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189 (221)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 01123456677777542 2223458999999999999999999999999999 4444444444443 2
Q ss_pred CCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 173 GYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..+..||++||+......+ ++++.+
T Consensus 190 ~~~~tii~~tH~~~~~~~~---d~v~~l 214 (221)
T TIGR02211 190 ELNTSFLVVTHDLELAKKL---DRVLEM 214 (221)
T ss_pred hcCCEEEEEeCCHHHHhhc---CEEEEE
Confidence 2467899999998876542 445554
No 125
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.72 E-value=1.3e-07 Score=90.99 Aligned_cols=132 Identities=13% Similarity=0.161 Sum_probs=84.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---c--ccc------------eEEEEe---------cCCc---------c
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---Q--FVP------------RIWVCT---------MSGQ---------K 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~--F~~------------~~~v~~---------v~~~---------~ 106 (398)
.-.+++|+|++|+|||||.+.++.-..... . |+. +.++.. +.++ .
T Consensus 30 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~ 109 (362)
T TIGR03258 30 AGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM 109 (362)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC
Confidence 346899999999999999999986421111 0 110 111100 0000 0
Q ss_pred ---cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCC-C
Q 015891 107 ---TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGY-G 175 (398)
Q Consensus 107 ---~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~-g 175 (398)
........+++.+++... .......+.+++++..+.+.|..++-+++||++. |....+.+...+. ... |
T Consensus 110 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g 189 (362)
T TIGR03258 110 PKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPE 189 (362)
T ss_pred CHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCC
Confidence 112234567777777653 2334458999999999999999999999999998 4433333433332 222 7
Q ss_pred CEEEEEeCChHHHHHhcC
Q 015891 176 ERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 176 s~IIiTTR~~~v~~~~~~ 193 (398)
..+|++||+...+..+++
T Consensus 190 ~til~vTHd~~ea~~l~d 207 (362)
T TIGR03258 190 LTILCVTHDQDDALTLAD 207 (362)
T ss_pred CEEEEEeCCHHHHHHhCC
Confidence 899999999988766544
No 126
>PRK13409 putative ATPase RIL; Provisional
Probab=98.72 E-value=1.6e-07 Score=96.19 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=89.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-ccccceEEEEecCCc------ccH-------------HHHHHHHHHHcCC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQFVPRIWVCTMSGQ------KTA-------------ESIVKRILKRLGV 121 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~~v~~v~~~------~~~-------------~~~~~~il~~l~~ 121 (398)
.-.+++|+|++|+|||||++.++....-. .......-+.++.+. .+. .....+++..+++
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l 443 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQL 443 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCC
Confidence 45689999999999999999998752111 110000112212221 111 1223556777777
Q ss_pred CCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcCC
Q 015891 122 DDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVGE 194 (398)
Q Consensus 122 ~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~~ 194 (398)
... .......+++++++..+++++..++-+++||++. |......+...+. ...+..||++||+...+..++
T Consensus 444 ~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~a-- 521 (590)
T PRK13409 444 ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYIS-- 521 (590)
T ss_pred HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC--
Confidence 542 2333458999999999999999999999999999 4444444444443 224788999999998887753
Q ss_pred CceEEcC
Q 015891 195 ENLHQLQ 201 (398)
Q Consensus 195 ~~~~~l~ 201 (398)
++++.+.
T Consensus 522 Drvivl~ 528 (590)
T PRK13409 522 DRLMVFE 528 (590)
T ss_pred CEEEEEc
Confidence 3455554
No 127
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.72 E-value=2.3e-07 Score=94.68 Aligned_cols=197 Identities=16% Similarity=0.147 Sum_probs=110.5
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
+++||.+..++.|...+.. ..-...+.++|+.|+||||+|+.+++. +..... . ....+..-.....+..
T Consensus 16 ~divGQe~vv~~L~~~l~~---~rl~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~~~----~--~~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 16 AEVVGQEHVLTALANALDL---GRLHHAYLFSGTRGVGKTTIARLLAKG--LNCETG----I--TATPCGECDNCREIEQ 84 (647)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHh--hhhccC----C--CCCCCCCCHHHHHHHc
Confidence 6789999999999999864 223456789999999999999999876 221100 0 0000000011111110
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCC-hHHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRN-EKLTT 189 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~-~~v~~ 189 (398)
.-..+.......+....+..+..+... ..++..++|+|+++ +....+.|...+-. ....++|++|.+ ..+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 000000000000012233333322221 23466799999999 45666666666642 235555555544 44554
Q ss_pred HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891 190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF 249 (398)
Q Consensus 190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 249 (398)
.+......|.+.+|+. +.....+.+.+...+.... ......|++.++|.+..+..+
T Consensus 165 TI~SRC~~~~f~~Ls~-~ei~~~L~~il~~e~i~~e---~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 165 TILSRCLQFHLKALDV-EQIRQQLEHILQAEQIPFE---PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHHhhheEeeCCCCCH-HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 4445578999999999 6677677665533222211 235677888999988766544
No 128
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=1.9e-07 Score=93.72 Aligned_cols=196 Identities=15% Similarity=0.129 Sum_probs=106.8
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
+++||-+..++.|..++.. ..-...+.++|+.|+||||+|+.+++...-...+... . ..... ....+..
T Consensus 16 ~divGq~~v~~~L~~~~~~---~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~---p-Cg~C~----~C~~i~~ 84 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQ---QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSAN---P-CNDCE----NCREIDE 84 (509)
T ss_pred HHhcCCHHHHHHHHHHHHh---CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcc---c-CCCCH----HHHHHhc
Confidence 6789999999999999964 2234567899999999999999998762111111100 0 00000 0000000
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCC-hHHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRN-EKLTT 189 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~-~~v~~ 189 (398)
.-..+.......+..+.+..+..+... ..++..++|+|+++ +....+.|...+.. ...+++|++|.+ ..+..
T Consensus 85 g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~ 164 (509)
T PRK14958 85 GRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPV 164 (509)
T ss_pred CCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchH
Confidence 000000000000012233323222211 12455799999999 45566666666653 245666665544 34444
Q ss_pred HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
.+......+++.+++. ++....+.+.+...+....+ +.+..|++.++|-+..+..
T Consensus 165 tI~SRc~~~~f~~l~~-~~i~~~l~~il~~egi~~~~---~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 165 TVLSRCLQFHLAQLPP-LQIAAHCQHLLKEENVEFEN---AALDLLARAANGSVRDALS 219 (509)
T ss_pred HHHHHhhhhhcCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHH
Confidence 4444567889999998 55655555554433333222 2566788888888866543
No 129
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.72 E-value=2.3e-07 Score=82.92 Aligned_cols=131 Identities=14% Similarity=0.121 Sum_probs=82.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc------------eEEEEecC---Cccc---------------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP------------RIWVCTMS---GQKT--------------- 107 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~------------~~~v~~v~---~~~~--------------- 107 (398)
..-.+++|.|++|+|||||++.++...... . .|+. ..++..-. ...+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~ 101 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKL 101 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCc
Confidence 356789999999999999999997652110 0 0100 11111000 0000
Q ss_pred ---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCE
Q 015891 108 ---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGER 177 (398)
Q Consensus 108 ---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~ 177 (398)
......++++.+++... .......+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t 181 (213)
T TIGR01277 102 NAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRT 181 (213)
T ss_pred cHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 11223456666776532 2223358899999999999999999999999999 4444444444443 224789
Q ss_pred EEEEeCChHHHHHh
Q 015891 178 LIITSRNEKLTTEM 191 (398)
Q Consensus 178 IIiTTR~~~v~~~~ 191 (398)
||++||+......+
T Consensus 182 ii~vsh~~~~~~~~ 195 (213)
T TIGR01277 182 LLMVTHHLSDARAI 195 (213)
T ss_pred EEEEeCCHHHHHhh
Confidence 99999998876554
No 130
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.72 E-value=3.4e-07 Score=84.39 Aligned_cols=82 Identities=11% Similarity=0.240 Sum_probs=59.6
Q ss_pred HHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
..++++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+
T Consensus 132 ~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~ 211 (257)
T PRK10619 132 AVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211 (257)
T ss_pred HHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3456777777543 2334458999999999999999999999999999 4444444444433 2247899999999
Q ss_pred hHHHHHhcC
Q 015891 185 EKLTTEMVG 193 (398)
Q Consensus 185 ~~v~~~~~~ 193 (398)
...+..+++
T Consensus 212 ~~~~~~~~d 220 (257)
T PRK10619 212 MGFARHVSS 220 (257)
T ss_pred HHHHHHhcC
Confidence 988776433
No 131
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.71 E-value=2.6e-07 Score=88.93 Aligned_cols=132 Identities=15% Similarity=0.124 Sum_probs=84.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccce---------------EEEEecCCc------cc----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVPR---------------IWVCTMSGQ------KT---------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~~---------------~~v~~v~~~------~~---------- 107 (398)
.-.+++|+|++|+|||||++.++.-.... . .|+.. ..+.++.+. .+
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 34689999999999999999997642110 0 01000 001111111 01
Q ss_pred --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
......++++.+++... .......+++++++..+.+.+..++-+++||++. |....+.+...+. ...+..|
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ti 182 (352)
T PRK11144 103 KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182 (352)
T ss_pred hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 11234567777887642 2333458999999999999999999999999999 4444444443332 2237789
Q ss_pred EEEeCChHHHHHhcC
Q 015891 179 IITSRNEKLTTEMVG 193 (398)
Q Consensus 179 IiTTR~~~v~~~~~~ 193 (398)
|++||+...+..+++
T Consensus 183 i~vTHd~~~~~~~~d 197 (352)
T PRK11144 183 LYVSHSLDEILRLAD 197 (352)
T ss_pred EEEecCHHHHHHhCC
Confidence 999999987766543
No 132
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=1.6e-07 Score=85.74 Aligned_cols=131 Identities=16% Similarity=0.147 Sum_probs=83.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc-----------eEEEEecCCc------cc--------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP-----------RIWVCTMSGQ------KT-------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~-----------~~~v~~v~~~------~~-------------- 107 (398)
.-.+++|+|++|+|||||++.++...... . .|+. ...+.++.+. .+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW 105 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC
Confidence 45689999999999999999997642110 0 0100 0011111111 00
Q ss_pred ----HHHHHHHHHHHcCCCC---CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCC
Q 015891 108 ----AESIVKRILKRLGVDD---GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGY 174 (398)
Q Consensus 108 ----~~~~~~~il~~l~~~~---~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~ 174 (398)
......++++.+++.. ........+.++.++..+.+.+..++-+++||++. |....+.+...+. ...
T Consensus 106 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~ 185 (242)
T cd03295 106 PKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL 185 (242)
T ss_pred CHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 0123456677777763 22333458899999999999999999999999999 4444444444443 123
Q ss_pred CCEEEEEeCChHHHHHhc
Q 015891 175 GERLIITSRNEKLTTEMV 192 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~ 192 (398)
|..||++||+...+..++
T Consensus 186 g~tvii~sH~~~~~~~~~ 203 (242)
T cd03295 186 GKTIVFVTHDIDEAFRLA 203 (242)
T ss_pred CCEEEEEecCHHHHHHhC
Confidence 788999999988666543
No 133
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=1.5e-07 Score=90.23 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=84.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc------------eEEEEe---------cCCc------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP------------RIWVCT---------MSGQ------------ 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~------------~~~v~~---------v~~~------------ 105 (398)
.-.+++|.|++|+|||||++.++.-..... .|+. +.++.. +.++
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~ 110 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK 110 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCH
Confidence 456899999999999999999975421110 0110 111100 0000
Q ss_pred ccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 106 KTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 106 ~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
....+....+++.+++... .......+++++++..+.+.|..++-+++||++. |....+.+...+. ...+..+
T Consensus 111 ~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ti 190 (351)
T PRK11432 111 EERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITS 190 (351)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 0112344566777777543 2334458999999999999999999999999998 4443344443332 2347899
Q ss_pred EEEeCChHHHHHhcCC
Q 015891 179 IITSRNEKLTTEMVGE 194 (398)
Q Consensus 179 IiTTR~~~v~~~~~~~ 194 (398)
|++||+...+..+++.
T Consensus 191 i~vTHd~~e~~~laD~ 206 (351)
T PRK11432 191 LYVTHDQSEAFAVSDT 206 (351)
T ss_pred EEEcCCHHHHHHhCCE
Confidence 9999999887665443
No 134
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=9.6e-08 Score=86.60 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=82.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc------------ceEEEEe---cCCccc----------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV------------PRIWVCT---MSGQKT---------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~------------~~~~v~~---v~~~~~---------------- 107 (398)
.-.+++|+|++|+|||||++.+..-... .. .|+ ...++.. +....+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 103 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLN 103 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCC
Confidence 4678999999999999999999654110 00 000 0111110 000000
Q ss_pred --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
......++++.+++... .......+.++.++..+.+.+..++-+++||++. |....+.+...+. ...|..|
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~ti 183 (232)
T PRK10771 104 AAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTL 183 (232)
T ss_pred HHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 11224556667776532 2233358999999999999999999999999998 4444444444432 2237899
Q ss_pred EEEeCChHHHHHhc
Q 015891 179 IITSRNEKLTTEMV 192 (398)
Q Consensus 179 IiTTR~~~v~~~~~ 192 (398)
|++||+...+..++
T Consensus 184 ii~sH~~~~~~~~~ 197 (232)
T PRK10771 184 LMVSHSLEDAARIA 197 (232)
T ss_pred EEEECCHHHHHHhC
Confidence 99999998776643
No 135
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.71 E-value=2e-07 Score=82.44 Aligned_cols=131 Identities=16% Similarity=0.085 Sum_probs=83.1
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--------------cc-cceEEEEe---cCCcccH-------------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--------------QF-VPRIWVCT---MSGQKTA------------- 108 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--------------~F-~~~~~v~~---v~~~~~~------------- 108 (398)
..-.+++|+|++|+|||||++.+...... .. .+ ....|+.. .....+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~ 104 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPG 104 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcc
Confidence 35678999999999999999999765211 00 00 01112110 0001111
Q ss_pred HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEe
Q 015891 109 ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITS 182 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTT 182 (398)
......+++.+++... .......+.++.++..+.+.+..++-++++|++. |....+.+...+. ...+..||+||
T Consensus 105 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 184 (200)
T PRK13540 105 AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTS 184 (200)
T ss_pred hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 1124556666666432 2222347899999999999999999999999998 4444445544443 23478899999
Q ss_pred CChHHHHHh
Q 015891 183 RNEKLTTEM 191 (398)
Q Consensus 183 R~~~v~~~~ 191 (398)
|+......+
T Consensus 185 h~~~~~~~~ 193 (200)
T PRK13540 185 HQDLPLNKA 193 (200)
T ss_pred CCchhcccc
Confidence 998776653
No 136
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=1.1e-07 Score=81.88 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=74.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCC-cccHHHHHHHHHHHcCC--CCCCC---CCcC--CCc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSG-QKTAESIVKRILKRLGV--DDGTT---NSFE--GQG 133 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~-~~~~~~~~~~il~~l~~--~~~~~---~~~~--~~~ 133 (398)
.-.+++|.|++|+|||||++.++.- . ....+.+++....- ...... ....++. ..... ...+ .+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~--~-~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRL--Y-DPTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC--C-CCCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhCH
Confidence 4578999999999999999999886 2 22334444331100 000111 0111110 00000 0000 577
Q ss_pred hHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHH
Q 015891 134 LAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 134 ~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~ 190 (398)
+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+......
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 8899999999999999999999999 4444444444432 2235789999999887754
No 137
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.71 E-value=3.6e-07 Score=83.79 Aligned_cols=81 Identities=12% Similarity=0.214 Sum_probs=56.9
Q ss_pred HHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChH
Q 015891 113 KRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEK 186 (398)
Q Consensus 113 ~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~ 186 (398)
..++..+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+..
T Consensus 126 ~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~ 205 (250)
T PRK11264 126 RELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS 205 (250)
T ss_pred HHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 445666676542 2223348899999999999999999999999999 4444444444332 224778999999988
Q ss_pred HHHHhcC
Q 015891 187 LTTEMVG 193 (398)
Q Consensus 187 v~~~~~~ 193 (398)
.+..+++
T Consensus 206 ~~~~~~d 212 (250)
T PRK11264 206 FARDVAD 212 (250)
T ss_pred HHHHhcC
Confidence 7766433
No 138
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=3.8e-07 Score=83.18 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=83.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc-----------eEEEEecCCcc-----c--------------H
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP-----------RIWVCTMSGQK-----T--------------A 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~-----------~~~v~~v~~~~-----~--------------~ 108 (398)
.-.+++|+|++|+|||||++.++.-... ... |+. ...+.++.+.. + .
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~ 107 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEK 107 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcH
Confidence 3568999999999999999999764210 000 100 00011111110 0 0
Q ss_pred HHHHHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEE
Q 015891 109 ESIVKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLII 180 (398)
Q Consensus 109 ~~~~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIi 180 (398)
......+++.+++.. ........+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||+
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~ 187 (241)
T PRK14250 108 NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIW 187 (241)
T ss_pred HHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 122345667777752 22333458899999999999999999999999999 4444444444443 123789999
Q ss_pred EeCChHHHHHhc
Q 015891 181 TSRNEKLTTEMV 192 (398)
Q Consensus 181 TTR~~~v~~~~~ 192 (398)
+||+.+.+..++
T Consensus 188 ~sH~~~~~~~~~ 199 (241)
T PRK14250 188 ITHNMEQAKRIG 199 (241)
T ss_pred EeccHHHHHHhC
Confidence 999998776643
No 139
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=2.6e-07 Score=85.74 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=82.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc------------------ceEEEEe---cCCcccH---------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV------------------PRIWVCT---MSGQKTA--------- 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~------------------~~~~v~~---v~~~~~~--------- 108 (398)
.-.+++|+|++|+|||||++.++.-... .. .|+ .+.++.. +....+.
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 128 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence 4578999999999999999999764211 00 010 0111110 0000011
Q ss_pred ---------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 109 ---------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 109 ---------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
.....++++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. .
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~ 208 (269)
T cd03294 129 VQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208 (269)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 1123456667777542 2233458999999999999999999999999999 4444444444432 2
Q ss_pred CCCCEEEEEeCChHHHHHhc
Q 015891 173 GYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~ 192 (398)
..|..||++||+.+.+..++
T Consensus 209 ~~g~tiii~tH~~~~~~~~~ 228 (269)
T cd03294 209 ELQKTIVFITHDLDEALRLG 228 (269)
T ss_pred hcCCEEEEEeCCHHHHHHhc
Confidence 23789999999988765543
No 140
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.71 E-value=7.2e-08 Score=87.64 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=57.6
Q ss_pred HHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891 112 VKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNE 185 (398)
Q Consensus 112 ~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~ 185 (398)
..++++.+++.... ......+.+++++..+.+.+..++-++++|++. |......+...+. ...|..||++||+.
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 203 (236)
T cd03219 124 AEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM 203 (236)
T ss_pred HHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 44566667765422 223348899999999999999999999999999 4444444444432 12577899999999
Q ss_pred HHHHHhc
Q 015891 186 KLTTEMV 192 (398)
Q Consensus 186 ~v~~~~~ 192 (398)
..+..++
T Consensus 204 ~~~~~~~ 210 (236)
T cd03219 204 DVVMSLA 210 (236)
T ss_pred HHHHHhC
Confidence 8876653
No 141
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.71 E-value=2.8e-07 Score=88.62 Aligned_cols=132 Identities=20% Similarity=0.171 Sum_probs=85.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccceEE---------EEecCCc------------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVPRIW---------VCTMSGQ------------------------ 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~~---------v~~v~~~------------------------ 105 (398)
.-.+++|.|++|+|||||.+.++.-..... .|+...+ +.++.+.
T Consensus 29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (353)
T TIGR03265 29 KGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGR 108 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCH
Confidence 356899999999999999999976521110 0111000 0001110
Q ss_pred ccHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 106 KTAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 106 ~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
........++++.+++.... ......+++++++..+.+.|..++-+++||++. |....+.+...+. ...+..+
T Consensus 109 ~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tv 188 (353)
T TIGR03265 109 AEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTT 188 (353)
T ss_pred HHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 01123456677888876532 233458999999999999999999999999998 4433333433332 2347899
Q ss_pred EEEeCChHHHHHhcC
Q 015891 179 IITSRNEKLTTEMVG 193 (398)
Q Consensus 179 IiTTR~~~v~~~~~~ 193 (398)
|++||+...+..+++
T Consensus 189 i~vTHd~~ea~~l~d 203 (353)
T TIGR03265 189 IMVTHDQEEALSMAD 203 (353)
T ss_pred EEEcCCHHHHHHhCC
Confidence 999999987766544
No 142
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.70 E-value=1.6e-07 Score=90.83 Aligned_cols=132 Identities=16% Similarity=0.186 Sum_probs=84.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccceEE---------EEecCCc---------------------c--
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVPRIW---------VCTMSGQ---------------------K-- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~~~~---------v~~v~~~---------------------~-- 106 (398)
.-.+++|.|++|+|||||.+.++.-.... . .|+..-+ +.++.+. .
T Consensus 39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~ 118 (375)
T PRK09452 39 NGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA 118 (375)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCH
Confidence 45689999999999999999997542110 0 0111000 0001110 0
Q ss_pred -cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 107 -TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 107 -~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
.......++++.+++... ...+...+++++++..+.+.|..++-+++||++. |....+.+...+. ...+..+
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~ti 198 (375)
T PRK09452 119 AEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITF 198 (375)
T ss_pred HHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 012234566777777642 2233458999999999999999999999999998 4444444444443 2347899
Q ss_pred EEEeCChHHHHHhcC
Q 015891 179 IITSRNEKLTTEMVG 193 (398)
Q Consensus 179 IiTTR~~~v~~~~~~ 193 (398)
|++||+...+..+++
T Consensus 199 I~vTHd~~ea~~laD 213 (375)
T PRK09452 199 VFVTHDQEEALTMSD 213 (375)
T ss_pred EEEeCCHHHHHHhCC
Confidence 999999987766543
No 143
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.70 E-value=7.3e-08 Score=92.59 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=85.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc------------eEEEEe---------cCC-------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP------------RIWVCT---------MSG------------- 104 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~------------~~~v~~---------v~~------------- 104 (398)
.-.+++|.|++|+|||||++.++.-.... . .|+. ..++.. +.+
T Consensus 27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~ 106 (353)
T PRK10851 27 SGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE 106 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc
Confidence 34689999999999999999997642110 0 0100 111100 000
Q ss_pred ccc---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCC
Q 015891 105 QKT---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGY 174 (398)
Q Consensus 105 ~~~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~ 174 (398)
..+ ......++++.+++... .......+++++++..+.+.|..++-+++||++. |....+.+...+. ...
T Consensus 107 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~ 186 (353)
T PRK10851 107 RPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEEL 186 (353)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 001 12345567777777542 2334458999999999999999999999999998 4444444443332 234
Q ss_pred CCEEEEEeCChHHHHHhcC
Q 015891 175 GERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~~ 193 (398)
+..+|++||+...+..+++
T Consensus 187 g~tii~vTHd~~ea~~~~D 205 (353)
T PRK10851 187 KFTSVFVTHDQEEAMEVAD 205 (353)
T ss_pred CCEEEEEeCCHHHHHHhCC
Confidence 7899999999988777644
No 144
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=1.7e-07 Score=90.76 Aligned_cols=132 Identities=14% Similarity=0.170 Sum_probs=83.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc------------eEEEEe---------cCCc---------c--
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP------------RIWVCT---------MSGQ---------K-- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~------------~~~v~~---------v~~~---------~-- 106 (398)
.-.+++|.|++|+|||||.+.++.-..... .|+. +.++.. +.++ .
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~ 123 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPK 123 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCH
Confidence 456899999999999999999975421100 0110 111100 0000 0
Q ss_pred -cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 107 -TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 107 -~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
.......++++.+++... .......+++++++..|.+.|..++-+|+||++. |....+.+...+. ...|..+
T Consensus 124 ~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ti 203 (377)
T PRK11607 124 AEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTC 203 (377)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 012234567777777643 2333458999999999999999999999999998 3433333332221 2347899
Q ss_pred EEEeCChHHHHHhcC
Q 015891 179 IITSRNEKLTTEMVG 193 (398)
Q Consensus 179 IiTTR~~~v~~~~~~ 193 (398)
|++||+...+..+++
T Consensus 204 i~vTHd~~ea~~laD 218 (377)
T PRK11607 204 VMVTHDQEEAMTMAG 218 (377)
T ss_pred EEEcCCHHHHHHhCC
Confidence 999999987766544
No 145
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=3e-07 Score=87.72 Aligned_cols=83 Identities=12% Similarity=0.249 Sum_probs=59.4
Q ss_pred HHHHHHHcCCCCC----CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEE
Q 015891 112 VKRILKRLGVDDG----TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIIT 181 (398)
Q Consensus 112 ~~~il~~l~~~~~----~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiT 181 (398)
..++++.+++... ...+...+++++++..+.+.|..++-+||+|++. |......+...+. ...|..||++
T Consensus 136 ~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~i 215 (330)
T PRK15093 136 AIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLI 215 (330)
T ss_pred HHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3456777777642 2334468999999999999999999999999999 3333333333332 2347899999
Q ss_pred eCChHHHHHhcCC
Q 015891 182 SRNEKLTTEMVGE 194 (398)
Q Consensus 182 TR~~~v~~~~~~~ 194 (398)
||+..++..+++.
T Consensus 216 tHdl~~v~~~~dr 228 (330)
T PRK15093 216 SHDLQMLSQWADK 228 (330)
T ss_pred ECCHHHHHHhCCE
Confidence 9999888775443
No 146
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.70 E-value=2.9e-07 Score=81.91 Aligned_cols=140 Identities=16% Similarity=0.084 Sum_probs=87.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc-----------eEEEEecC---CcccH--------------H
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP-----------RIWVCTMS---GQKTA--------------E 109 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~-----------~~~v~~v~---~~~~~--------------~ 109 (398)
..-.+++|+|++|+|||||++.+....... . .|+. ..|+..-. ...+. .
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~ 105 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEE 105 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcH
Confidence 346789999999999999999997652110 0 0110 11221000 00011 1
Q ss_pred HHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891 110 SIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR 183 (398)
Q Consensus 110 ~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR 183 (398)
....++++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 185 (207)
T PRK13539 106 LDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATH 185 (207)
T ss_pred HHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 124556666776532 2223347899999999999999999999999999 4444444444443 234788999999
Q ss_pred ChHHHHHhcCCCceEEcCCCC
Q 015891 184 NEKLTTEMVGEENLHQLQPLS 204 (398)
Q Consensus 184 ~~~v~~~~~~~~~~~~l~~L~ 204 (398)
+...... .+++.+++..
T Consensus 186 ~~~~~~~----~~~~~~~~~~ 202 (207)
T PRK13539 186 IPLGLPG----ARELDLGPFA 202 (207)
T ss_pred Cchhhcc----CcEEeecCcc
Confidence 9876553 5667776644
No 147
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.70 E-value=2.2e-07 Score=83.55 Aligned_cols=131 Identities=16% Similarity=0.228 Sum_probs=79.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--c---------------cceEEEEec---CCcccH------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--F---------------VPRIWVCTM---SGQKTA------------ 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F---------------~~~~~v~~v---~~~~~~------------ 108 (398)
.-.+++|+|++|+|||||++.+..-... ... + ..+.++..- ....+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR 104 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence 4579999999999999999999654110 000 0 001121100 000011
Q ss_pred ----HHHHHHHHHHc-CCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCE
Q 015891 109 ----ESIVKRILKRL-GVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGER 177 (398)
Q Consensus 109 ----~~~~~~il~~l-~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~ 177 (398)
......+++.+ ++... .......+.+++++..+.+.+..++-++++|++. |....+.+...+. ...+..
T Consensus 105 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 184 (222)
T cd03224 105 RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVT 184 (222)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 11223444544 23221 2222347889999999999999999999999999 4444444444443 225789
Q ss_pred EEEEeCChHHHHHhc
Q 015891 178 LIITSRNEKLTTEMV 192 (398)
Q Consensus 178 IIiTTR~~~v~~~~~ 192 (398)
||++||+......++
T Consensus 185 iii~sH~~~~~~~~~ 199 (222)
T cd03224 185 ILLVEQNARFALEIA 199 (222)
T ss_pred EEEEeCCHHHHHHhc
Confidence 999999988766543
No 148
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.70 E-value=3.4e-07 Score=81.83 Aligned_cols=137 Identities=16% Similarity=0.188 Sum_probs=84.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc----------------ceEEEEecC---Cccc------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV----------------PRIWVCTMS---GQKT------------ 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~----------------~~~~v~~v~---~~~~------------ 107 (398)
.-.+++|.|++|+|||||++.++.-... .. .++ ...++..-. ...+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 104 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV 104 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh
Confidence 4568999999999999999999764211 00 000 011111000 0000
Q ss_pred -------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891 108 -------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY 174 (398)
Q Consensus 108 -------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~ 174 (398)
..+....+++.+++... .......+.++.++..+.+.+..++-+++||++. |....+.+...+. ...
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 184 (213)
T cd03262 105 KGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 184 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHc
Confidence 01123455666666542 2233458899999999999999999999999999 4444444444443 124
Q ss_pred CCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 175 GERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
|..||++||+......++ ++++.+
T Consensus 185 ~~tvi~~sh~~~~~~~~~--d~i~~l 208 (213)
T cd03262 185 GMTMVVVTHEMGFAREVA--DRVIFM 208 (213)
T ss_pred CCEEEEEeCCHHHHHHhC--CEEEEE
Confidence 778999999988776543 344444
No 149
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=3.3e-07 Score=85.55 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=56.8
Q ss_pred HHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891 113 KRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNE 185 (398)
Q Consensus 113 ~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~ 185 (398)
..+++.+++.. ........+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+.
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 205 (280)
T PRK13649 126 REKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205 (280)
T ss_pred HHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH
Confidence 34556667752 23333458899999999999999999999999999 4444444444433 22478999999998
Q ss_pred HHHHHh
Q 015891 186 KLTTEM 191 (398)
Q Consensus 186 ~v~~~~ 191 (398)
..+..+
T Consensus 206 ~~~~~~ 211 (280)
T PRK13649 206 DDVANY 211 (280)
T ss_pred HHHHHh
Confidence 877654
No 150
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=4.9e-08 Score=92.87 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=85.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc-----------------ceEEEEecCCcc--------c------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV-----------------PRIWVCTMSGQK--------T------ 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~-----------------~~~~v~~v~~~~--------~------ 107 (398)
.-.+++|+|++|+|||||++.+..-.... . .|+ .+.++ .+.. .
T Consensus 40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v---~Q~~~~~l~p~~~v~~~l~ 116 (327)
T PRK11308 40 RGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIV---FQNPYGSLNPRKKVGQILE 116 (327)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEE---EcCchhhcCCccCHHHHHH
Confidence 45689999999999999999997642110 0 010 01111 1110 1
Q ss_pred -------------HHHHHHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH
Q 015891 108 -------------AESIVKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV 169 (398)
Q Consensus 108 -------------~~~~~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~ 169 (398)
......++++.+++.. ........++++.++..+.+.|..++-+||+|++. |......+...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~l 196 (327)
T PRK11308 117 EPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNL 196 (327)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 1123456677777753 23344568999999999999999999999999999 33333333333
Q ss_pred cC---CCCCCEEEEEeCChHHHHHhcCC
Q 015891 170 LP---RGYGERLIITSRNEKLTTEMVGE 194 (398)
Q Consensus 170 l~---~~~gs~IIiTTR~~~v~~~~~~~ 194 (398)
+. ...|..||++||+..++..+++.
T Consensus 197 L~~l~~~~g~til~iTHdl~~~~~~adr 224 (327)
T PRK11308 197 MMDLQQELGLSYVFISHDLSVVEHIADE 224 (327)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 32 23478999999999988776443
No 151
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.70 E-value=1.9e-07 Score=84.13 Aligned_cols=130 Identities=17% Similarity=0.157 Sum_probs=82.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccce-------EEEEecCCc------ccH--------------HHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPR-------IWVCTMSGQ------KTA--------------ESI 111 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~-------~~v~~v~~~------~~~--------------~~~ 111 (398)
.-.+++|.|++|+|||||++.+...... .. .|+.. ..+.++.+. .+. ...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~ 104 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSR 104 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHH
Confidence 4568999999999999999999764110 01 01000 001111111 111 123
Q ss_pred HHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891 112 VKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNE 185 (398)
Q Consensus 112 ~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~ 185 (398)
...+++.+++.... ......+.++.++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+.
T Consensus 105 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~ 184 (223)
T TIGR03740 105 IDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL 184 (223)
T ss_pred HHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 34566667765422 222347889999999999999999999999998 4444444444443 23477899999999
Q ss_pred HHHHHh
Q 015891 186 KLTTEM 191 (398)
Q Consensus 186 ~v~~~~ 191 (398)
..+..+
T Consensus 185 ~~~~~~ 190 (223)
T TIGR03740 185 SEVQQL 190 (223)
T ss_pred HHHHHh
Confidence 877654
No 152
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=1e-06 Score=84.85 Aligned_cols=197 Identities=15% Similarity=0.125 Sum_probs=110.5
Q ss_pred CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccce------EEEEecCCcccHHH
Q 015891 37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPR------IWVCTMSGQKTAES 110 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~------~~v~~v~~~~~~~~ 110 (398)
..+++|.+...+.|.+.+.. ..-...+.++|+.|+||+|+|..+++...-....... .-+. +.....
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~---~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~--- 90 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRS---GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHP--- 90 (365)
T ss_pred hhhccChHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCCh---
Confidence 36799999999999999864 2335578999999999999999887651100100000 0000 000110
Q ss_pred HHHHHHHHcCCCC--------CCCC-C-cCCCchHHHHHHHHHHHh-----CCCcEEEecCCC--CHHHHHHHHhHcCCC
Q 015891 111 IVKRILKRLGVDD--------GTTN-S-FEGQGLAFLDYVLQQQLI-----GKRYLIVLDDFE--DMEVCKHLSKVLPRG 173 (398)
Q Consensus 111 ~~~~il~~l~~~~--------~~~~-~-~~~~~~~~~~~~l~~~l~-----~k~~LlVLDdv~--~~~~~~~l~~~l~~~ 173 (398)
..+.+. .-..++ .... . ...-.+++.+. +.+.+. +.+.++|+||++ +....+.|...+..-
T Consensus 91 ~c~~i~-~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~-l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 91 VARRIA-AGAHGGLLTLERSWNEKGKRLRTVITVDEVRE-LISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred HHHHHH-ccCCCCeEEEecccccccccccccccHHHHHH-HHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 111111 100000 0000 0 00112334332 333332 456799999999 556666666666533
Q ss_pred -CCCEEEEEeCCh-HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccC
Q 015891 174 -YGERLIITSRNE-KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFP 250 (398)
Q Consensus 174 -~gs~IIiTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a 250 (398)
.++.+|++|++. .+...+......+.+.+++. ++...++.+..+... . .....+++.++|.|+....+.
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~-~~i~~~L~~~~~~~~----~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAP-EDVIDALAAAGPDLP----D---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCH-HHHHHHHHHhcccCC----H---HHHHHHHHHcCCCHHHHHHHh
Confidence 356677777765 44444455678999999999 556666665443211 1 122567888999998766544
No 153
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.70 E-value=1.7e-07 Score=82.49 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=86.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCC---------------------------CCccccceEEEEecC--Cc------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD---------------------------VKTQFVPRIWVCTMS--GQ------ 105 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~---------------------------~~~~F~~~~~v~~v~--~~------ 105 (398)
.+-.+++|.|++|+|||||.+.+....+ +.--|+..+.++.++ .+
T Consensus 32 ~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr 111 (263)
T COG1127 32 PRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR 111 (263)
T ss_pred cCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH
Confidence 4567999999999999999999954310 011122211111111 11
Q ss_pred -------ccHHHHHHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CH---HHHHHHHhHc
Q 015891 106 -------KTAESIVKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DM---EVCKHLSKVL 170 (398)
Q Consensus 106 -------~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~---~~~~~l~~~l 170 (398)
....++...-++..|+... ...+.+.+++...+..+++++.-.|-||++|++. |+ ...+.|...+
T Consensus 112 e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L 191 (263)
T COG1127 112 EHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIREL 191 (263)
T ss_pred hhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHH
Confidence 1122333344556677654 3445668999999999999999999999999998 33 4444444455
Q ss_pred CCCCCCEEEEEeCChHHHHHhcC
Q 015891 171 PRGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 171 ~~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...-|.++++.|||-+-+..+++
T Consensus 192 ~~~lg~T~i~VTHDl~s~~~i~D 214 (263)
T COG1127 192 NDALGLTVIMVTHDLDSLLTIAD 214 (263)
T ss_pred HHhhCCEEEEEECChHHHHhhhc
Confidence 55568999999999877666544
No 154
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=3.8e-07 Score=85.44 Aligned_cols=82 Identities=20% Similarity=0.271 Sum_probs=59.0
Q ss_pred HHHHHHHcCCC-C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVD-D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~-~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
...++..+++. . ........+.+++++..+.+.+..++-+|+||++. |....+.+...+. ...|..||++||+
T Consensus 125 ~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~ 204 (287)
T PRK13641 125 ALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204 (287)
T ss_pred HHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 35566677775 2 23334458999999999999999999999999999 4444444444443 2347899999999
Q ss_pred hHHHHHhcC
Q 015891 185 EKLTTEMVG 193 (398)
Q Consensus 185 ~~v~~~~~~ 193 (398)
.+.+..+++
T Consensus 205 ~~~~~~~~d 213 (287)
T PRK13641 205 MDDVAEYAD 213 (287)
T ss_pred HHHHHHhCC
Confidence 987766533
No 155
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=3.8e-07 Score=83.21 Aligned_cols=79 Identities=13% Similarity=0.228 Sum_probs=56.4
Q ss_pred HHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChH
Q 015891 113 KRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEK 186 (398)
Q Consensus 113 ~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~ 186 (398)
..+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+..
T Consensus 123 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 123 EKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 445666666532 2223448899999999999999999999999999 4444444444443 234788999999998
Q ss_pred HHHHh
Q 015891 187 LTTEM 191 (398)
Q Consensus 187 v~~~~ 191 (398)
....+
T Consensus 203 ~~~~~ 207 (242)
T PRK11124 203 VARKT 207 (242)
T ss_pred HHHHh
Confidence 77654
No 156
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.69 E-value=2.9e-07 Score=94.21 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=54.5
Q ss_pred HHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhc
Q 015891 116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~ 192 (398)
+..+++..........+++++++..+.+.+..++-+++||++. |....+.+...+..-. ..||++||+.+.+..++
T Consensus 149 l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 149 MDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred HHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-CeEEEEeCCHHHHHhhc
Confidence 3444443222333458999999999999999999999999999 4444445544544222 48999999998887754
Q ss_pred C
Q 015891 193 G 193 (398)
Q Consensus 193 ~ 193 (398)
+
T Consensus 228 d 228 (556)
T PRK11819 228 G 228 (556)
T ss_pred C
Confidence 3
No 157
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=3.4e-07 Score=83.45 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=57.7
Q ss_pred HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~ 184 (398)
...++..+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 204 (241)
T cd03256 125 ALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ 204 (241)
T ss_pred HHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3455666776532 2233458899999999999999999999999999 4444444444443 2237789999999
Q ss_pred hHHHHHhc
Q 015891 185 EKLTTEMV 192 (398)
Q Consensus 185 ~~v~~~~~ 192 (398)
.+.+..++
T Consensus 205 ~~~~~~~~ 212 (241)
T cd03256 205 VDLAREYA 212 (241)
T ss_pred HHHHHHhC
Confidence 88777553
No 158
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.69 E-value=3e-07 Score=93.14 Aligned_cols=132 Identities=14% Similarity=0.077 Sum_probs=84.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc---------------ceEEEEecC---Cccc-------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV---------------PRIWVCTMS---GQKT------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~---------------~~~~v~~v~---~~~~------------- 107 (398)
.-.+++|+|++|+|||||++.++.-..- ... |+ .+.|+..-. ...+
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 115 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQ 115 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccch
Confidence 4568999999999999999999764210 000 11 011221000 0001
Q ss_pred -HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEE
Q 015891 108 -AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLII 180 (398)
Q Consensus 108 -~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIi 180 (398)
.......++..+++... .......+.+++++..+.+.|..++-+++||++. |....+.+...+. ...|..||+
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii 195 (510)
T PRK15439 116 ASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVF 195 (510)
T ss_pred HHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 12334567777887643 2223458999999999999999999999999999 4444444444332 234788999
Q ss_pred EeCChHHHHHhcC
Q 015891 181 TSRNEKLTTEMVG 193 (398)
Q Consensus 181 TTR~~~v~~~~~~ 193 (398)
+||+...+..+++
T Consensus 196 vtHd~~~~~~~~d 208 (510)
T PRK15439 196 ISHKLPEIRQLAD 208 (510)
T ss_pred EeCCHHHHHHhCC
Confidence 9999887766433
No 159
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.69 E-value=3.7e-07 Score=82.48 Aligned_cols=136 Identities=19% Similarity=0.241 Sum_probs=85.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc------------------ceEEEEe---cCCccc----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV------------------PRIWVCT---MSGQKT---------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~------------------~~~~v~~---v~~~~~---------- 107 (398)
.-.+++|.|++|+|||||++.++.-.... . .|+ ...++.. +....+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~ 114 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL 114 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHH
Confidence 45799999999999999999997652100 0 000 1111110 000000
Q ss_pred --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
.......+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. .
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 194 (228)
T PRK10584 115 LRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194 (228)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 01223456666776542 2233458899999999999999999999999999 4555555544443 2
Q ss_pred CCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 173 GYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..+..||++||+...... .++++.+
T Consensus 195 ~~~~tii~~sH~~~~~~~---~d~i~~l 219 (228)
T PRK10584 195 EHGTTLILVTHDLQLAAR---CDRRLRL 219 (228)
T ss_pred hcCCEEEEEecCHHHHHh---CCEEEEE
Confidence 237799999999887643 2445554
No 160
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=7.1e-07 Score=94.00 Aligned_cols=194 Identities=11% Similarity=0.078 Sum_probs=109.0
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
.++||.+..++.|..++.. ..-...+.++|+.|+||||+|+.+.+...-....... . +....+. ..+..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~---~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---p-Cg~C~sC----~~~~~ 83 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDS---GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---P-CGECDSC----VALAP 83 (824)
T ss_pred HHhcCcHHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---C-CcccHHH----HHHHc
Confidence 5789999999999999964 2234568999999999999999998762111111000 0 0000000 00000
Q ss_pred HcCCCCCCC---CCcCCCchHHHHHHHHH----HHhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeC-ChH
Q 015891 118 RLGVDDGTT---NSFEGQGLAFLDYVLQQ----QLIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSR-NEK 186 (398)
Q Consensus 118 ~l~~~~~~~---~~~~~~~~~~~~~~l~~----~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR-~~~ 186 (398)
. +....+. ......+++..+....+ -...+..++|||+++ +....+.|...+.. ...+.+|++|. ...
T Consensus 84 g-~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 84 G-GPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred C-CCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 0 0000000 00001223333332211 123456799999999 45666677777753 34555555554 445
Q ss_pred HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 187 LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 187 v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
+...+....+.|++.+++. +....++.+.+...+...+. +.+..|++.++|-+..+.
T Consensus 163 Ll~TIrSRc~~v~F~~l~~-~~l~~~L~~il~~EGv~id~---eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPP-EVMRGYLERICAQEGVPVEP---GVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred hhHHHHhheeEEEeeCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 6655556678999999988 66776777665444333222 255667888888775443
No 161
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=4.2e-07 Score=86.24 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=57.4
Q ss_pred HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
...++..+++.. ........+++++++..+.+.|..++-+|+||++. |....+.+...+. ...|.+||++||+
T Consensus 156 ~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd 235 (320)
T PRK13631 156 AKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235 (320)
T ss_pred HHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 345667777752 23334458999999999999999999999999999 4444444444432 2347899999999
Q ss_pred hHHHHHh
Q 015891 185 EKLTTEM 191 (398)
Q Consensus 185 ~~v~~~~ 191 (398)
.+.+...
T Consensus 236 ~~~~~~~ 242 (320)
T PRK13631 236 MEHVLEV 242 (320)
T ss_pred HHHHHHh
Confidence 8866543
No 162
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.69 E-value=3.3e-07 Score=84.14 Aligned_cols=138 Identities=14% Similarity=0.164 Sum_probs=86.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc-------------ccce----------------EEE-EecCCc-----
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ-------------FVPR----------------IWV-CTMSGQ----- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~-------------F~~~----------------~~v-~~v~~~----- 105 (398)
.-.+++|+|++|+|||||++.++.-... ... |+.. .++ .++...
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 104 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVK 104 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHH
Confidence 4568999999999999999999765211 000 1110 010 000100
Q ss_pred ---------ccHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891 106 ---------KTAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP- 171 (398)
Q Consensus 106 ---------~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~- 171 (398)
........++++.+++.... ......+.+++++..+.+.+...+-+++||++. |......+...+.
T Consensus 105 ~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~ 184 (255)
T cd03236 105 GKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRE 184 (255)
T ss_pred HHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 01123456667777775422 223347889999999999999999999999999 4443333333332
Q ss_pred -CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 172 -RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 172 -~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
...+..||++||+.+.+..++ ++++.+.
T Consensus 185 l~~~~~tIIiiSHd~~~~~~~a--d~i~~l~ 213 (255)
T cd03236 185 LAEDDNYVLVVEHDLAVLDYLS--DYIHCLY 213 (255)
T ss_pred HHhcCCEEEEEECCHHHHHHhC--CEEEEEC
Confidence 123688999999998877643 3444443
No 163
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=3.4e-07 Score=85.04 Aligned_cols=79 Identities=14% Similarity=0.081 Sum_probs=55.3
Q ss_pred HHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHH
Q 015891 114 RILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKL 187 (398)
Q Consensus 114 ~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v 187 (398)
.++..+++... .......+++++++..+.+.+..++-+++||++. |......+...+. ...|..||++||+.+.
T Consensus 119 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~ 198 (271)
T PRK13638 119 EALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL 198 (271)
T ss_pred HHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45555665432 2223348899999999999999999999999999 4444444443432 1247789999999887
Q ss_pred HHHhc
Q 015891 188 TTEMV 192 (398)
Q Consensus 188 ~~~~~ 192 (398)
+..++
T Consensus 199 ~~~~~ 203 (271)
T PRK13638 199 IYEIS 203 (271)
T ss_pred HHHhC
Confidence 76643
No 164
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.68 E-value=2.8e-07 Score=84.10 Aligned_cols=87 Identities=20% Similarity=0.212 Sum_probs=59.5
Q ss_pred HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~ 184 (398)
..++++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+
T Consensus 126 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~ 205 (243)
T TIGR02315 126 ALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205 (243)
T ss_pred HHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3455666666532 2233458899999999999999999999999999 4444444444443 1236789999999
Q ss_pred hHHHHHhcCCCceEEc
Q 015891 185 EKLTTEMVGEENLHQL 200 (398)
Q Consensus 185 ~~v~~~~~~~~~~~~l 200 (398)
...+..+++ +++.+
T Consensus 206 ~~~~~~~~d--~v~~l 219 (243)
T TIGR02315 206 VDLAKKYAD--RIVGL 219 (243)
T ss_pred HHHHHHhcC--eEEEE
Confidence 987765433 34444
No 165
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.68 E-value=3.8e-07 Score=94.75 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=57.3
Q ss_pred HHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHH
Q 015891 113 KRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTT 189 (398)
Q Consensus 113 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~ 189 (398)
..++..+++.. .......+++++++..|.+.|..++-+|+||++. |....+.+...+..-. ..||++||+...+.
T Consensus 140 ~~~l~~lgl~~-~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-~tvlivsHd~~~l~ 217 (635)
T PRK11147 140 NEVLAQLGLDP-DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-GSIIFISHDRSFIR 217 (635)
T ss_pred HHHHHhCCCCC-CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-CEEEEEeCCHHHHH
Confidence 34455566642 2333458999999999999999999999999999 4455555555554222 48999999999887
Q ss_pred HhcC
Q 015891 190 EMVG 193 (398)
Q Consensus 190 ~~~~ 193 (398)
.+++
T Consensus 218 ~~~d 221 (635)
T PRK11147 218 NMAT 221 (635)
T ss_pred HhcC
Confidence 7543
No 166
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.68 E-value=4.9e-07 Score=81.53 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=86.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc-----------eEEEEecCCcc-----c---------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP-----------RIWVCTMSGQK-----T--------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~-----------~~~v~~v~~~~-----~--------------- 107 (398)
.-.+++|+|++|+|||||++.++..... .. .++. ...+.++.+.. +
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~ 111 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQ 111 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCC
Confidence 4568999999999999999999764210 00 0000 00111111110 0
Q ss_pred -HHHHHHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 108 -AESIVKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 108 -~~~~~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
.......+++.+++.. ........+.++.++..+.+.+..++-++|||++. |....+.+...+. ...|..|
T Consensus 112 ~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tv 191 (225)
T PRK10247 112 PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAV 191 (225)
T ss_pred hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 1123446777777742 23334458899999999999999999999999998 4444455544443 2237889
Q ss_pred EEEeCChHHHHHhcCCCceEEc
Q 015891 179 IITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 179 IiTTR~~~v~~~~~~~~~~~~l 200 (398)
|++||+.+.... .++++.+
T Consensus 192 ii~sh~~~~~~~---~d~i~~l 210 (225)
T PRK10247 192 LWVTHDKDEINH---ADKVITL 210 (225)
T ss_pred EEEECChHHHHh---CCEEEEE
Confidence 999999887753 3455555
No 167
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=2.8e-07 Score=82.94 Aligned_cols=87 Identities=20% Similarity=0.223 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHc---CCCCCCEEEE
Q 015891 108 AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVL---PRGYGERLII 180 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l---~~~~gs~IIi 180 (398)
......+.+..+++.... ..+...++++.++..++..|.-++.++|||++. |....+.+...+ ....|.+||+
T Consensus 115 ~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~ 194 (235)
T COG1122 115 IEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIII 194 (235)
T ss_pred HHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 344566777777776542 334458999999999999999999999999999 443333333333 2344789999
Q ss_pred EeCChHHHHHhcCC
Q 015891 181 TSRNEKLTTEMVGE 194 (398)
Q Consensus 181 TTR~~~v~~~~~~~ 194 (398)
+||+.+.....++.
T Consensus 195 ~tHd~~~~~~~ad~ 208 (235)
T COG1122 195 VTHDLELVLEYADR 208 (235)
T ss_pred EeCcHHHHHhhCCE
Confidence 99999887775443
No 168
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=1e-07 Score=86.81 Aligned_cols=137 Identities=19% Similarity=0.163 Sum_probs=84.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc------------ceEEEEe---cCCccc----------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV------------PRIWVCT---MSGQKT---------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~------------~~~~v~~---v~~~~~---------------- 107 (398)
.-.+++|.|++|+|||||++.++.-... .. .|+ .+.++.. +....+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 106 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSE 106 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccc
Confidence 4578999999999999999999764210 00 000 1111110 000000
Q ss_pred ------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCC
Q 015891 108 ------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGY 174 (398)
Q Consensus 108 ------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~ 174 (398)
.......+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 186 (239)
T cd03296 107 RPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL 186 (239)
T ss_pred cCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 01223456667776532 2223348899999999999999999999999999 4444444444443 123
Q ss_pred CCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 175 GERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
|..||++||+.+.+..++ ++++.+
T Consensus 187 ~~tvii~sH~~~~~~~~~--d~i~~l 210 (239)
T cd03296 187 HVTTVFVTHDQEEALEVA--DRVVVM 210 (239)
T ss_pred CCEEEEEeCCHHHHHHhC--CEEEEE
Confidence 678999999988766543 344444
No 169
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=5.2e-07 Score=81.87 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=83.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cc------------------cceEEEEec---CCccc----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QF------------------VPRIWVCTM---SGQKT---------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F------------------~~~~~v~~v---~~~~~---------- 107 (398)
.-.+++|.|++|+|||||++.++.-... .. .| ..+.++..- -...+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 113 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLL 113 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHH
Confidence 4568999999999999999999764210 00 00 011111100 00001
Q ss_pred --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
......++++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. .
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 193 (233)
T PRK11629 114 IGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR 193 (233)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 11234566777777542 2223448899999999999999999999999999 4444444444443 1
Q ss_pred CCCCEEEEEeCChHHHHHh
Q 015891 173 GYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~ 191 (398)
..|..||++||+.+.+..+
T Consensus 194 ~~g~tvii~sH~~~~~~~~ 212 (233)
T PRK11629 194 LQGTAFLVVTHDLQLAKRM 212 (233)
T ss_pred hCCCEEEEEeCCHHHHHhh
Confidence 2478999999999877654
No 170
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=3.9e-07 Score=84.86 Aligned_cols=132 Identities=20% Similarity=0.214 Sum_probs=82.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccce-----------EEEEecCCc----------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPR-----------IWVCTMSGQ---------------------- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~-----------~~v~~v~~~---------------------- 105 (398)
.-.+++|+|++|+|||||++.+...... .. .|+.. -.+.++.+.
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~ 108 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG 108 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC
Confidence 4568999999999999999999754110 00 01000 001111111
Q ss_pred ccH---HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891 106 KTA---ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG 175 (398)
Q Consensus 106 ~~~---~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g 175 (398)
.+. ......+++.+++... .......+.+++++..+.+++..++-++|||++. |....+.+...+. ...|
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g 188 (277)
T PRK13652 109 LDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYG 188 (277)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 000 1123455666666532 2233458999999999999999999999999999 4444444444443 2237
Q ss_pred CEEEEEeCChHHHHHhcC
Q 015891 176 ERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 176 s~IIiTTR~~~v~~~~~~ 193 (398)
.+||++||+.+....+++
T Consensus 189 ~tvli~tH~~~~~~~~~d 206 (277)
T PRK13652 189 MTVIFSTHQLDLVPEMAD 206 (277)
T ss_pred CEEEEEecCHHHHHHhCC
Confidence 899999999887655433
No 171
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.67 E-value=2.8e-07 Score=83.99 Aligned_cols=131 Identities=20% Similarity=0.240 Sum_probs=82.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc----------------ceEEEEe---cCCccc------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV----------------PRIWVCT---MSGQKT------------ 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~----------------~~~~v~~---v~~~~~------------ 107 (398)
.-.+++|.|++|+|||||++.+..-... .. .|+ .+.++.. +....+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 105 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV 105 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh
Confidence 4568999999999999999999754210 00 000 0111110 000000
Q ss_pred -------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891 108 -------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY 174 (398)
Q Consensus 108 -------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~ 174 (398)
......++++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...
T Consensus 106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 185 (240)
T PRK09493 106 RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE 185 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence 01123456666776532 2223347899999999999999999999999999 4444444444442 224
Q ss_pred CCEEEEEeCChHHHHHhc
Q 015891 175 GERLIITSRNEKLTTEMV 192 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~ 192 (398)
+..||++||+...+..++
T Consensus 186 ~~tiii~sH~~~~~~~~~ 203 (240)
T PRK09493 186 GMTMVIVTHEIGFAEKVA 203 (240)
T ss_pred CCEEEEEeCCHHHHHHhC
Confidence 788999999998876643
No 172
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.67 E-value=2.6e-07 Score=93.26 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=83.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc--------------eEEEEe-----------------cCCcc-
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP--------------RIWVCT-----------------MSGQK- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~--------------~~~v~~-----------------v~~~~- 106 (398)
.-.+++|+|++|+|||||++.++.-... ... |.. ..++.. +....
T Consensus 28 ~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 107 (490)
T PRK10938 28 AGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQ 107 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcc
Confidence 4568999999999999999999754110 000 000 001100 00000
Q ss_pred ---cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCE
Q 015891 107 ---TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGER 177 (398)
Q Consensus 107 ---~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~ 177 (398)
........++..+++... .......+++++++..+.+.+..++-+++||++. |....+.+...+. ...|..
T Consensus 108 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t 187 (490)
T PRK10938 108 DEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGIT 187 (490)
T ss_pred cchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence 011234567777877542 2333458999999999999999999999999999 4444444444432 234788
Q ss_pred EEEEeCChHHHHHhc
Q 015891 178 LIITSRNEKLTTEMV 192 (398)
Q Consensus 178 IIiTTR~~~v~~~~~ 192 (398)
||++||+...+...+
T Consensus 188 vii~tH~~~~~~~~~ 202 (490)
T PRK10938 188 LVLVLNRFDEIPDFV 202 (490)
T ss_pred EEEEeCCHHHHHhhC
Confidence 999999987776643
No 173
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.67 E-value=1.3e-07 Score=92.14 Aligned_cols=132 Identities=19% Similarity=0.181 Sum_probs=83.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c---------------cccc-eEEEEe---c----C--------C-----
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T---------------QFVP-RIWVCT---M----S--------G----- 104 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~---------------~F~~-~~~v~~---v----~--------~----- 104 (398)
.-.+++|.|++|+|||||.+.+..-.... . .+.. ..++.. + + .
T Consensus 28 ~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~ 107 (402)
T PRK09536 28 EGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS 107 (402)
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcc
Confidence 45689999999999999999997541100 0 0000 111110 0 0 0
Q ss_pred -----cccHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891 105 -----QKTAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG 173 (398)
Q Consensus 105 -----~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~ 173 (398)
..........+++.+++.... ......+.+++++..+.+.|..++-+++||++. |......+...+. ..
T Consensus 108 ~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~ 187 (402)
T PRK09536 108 RFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD 187 (402)
T ss_pred cccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 001123456677777776432 223348999999999999999999999999999 4432233333322 12
Q ss_pred CCCEEEEEeCChHHHHHhcC
Q 015891 174 YGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~~~~ 193 (398)
.+.+||++||+.+.+..+++
T Consensus 188 ~g~TIIivsHdl~~~~~~ad 207 (402)
T PRK09536 188 DGKTAVAAIHDLDLAARYCD 207 (402)
T ss_pred cCCEEEEEECCHHHHHHhCC
Confidence 47799999999988876544
No 174
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.67 E-value=9.4e-08 Score=89.79 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=87.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc----------------------cccceEEEEecC--------------Cc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT----------------------QFVPRIWVCTMS--------------GQ 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~----------------------~F~~~~~v~~v~--------------~~ 105 (398)
+-..++|+||+|+|||||.+.++.=+.... -|...+....++ ..
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k 107 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK 107 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch
Confidence 456899999999999999999965321110 011100000010 01
Q ss_pred ccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH---HHHHHHHhHc---CCCCCCEE
Q 015891 106 KTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM---EVCKHLSKVL---PRGYGERL 178 (398)
Q Consensus 106 ~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~---~~~~~l~~~l---~~~~gs~I 178 (398)
....+-..+.++.|++... ...+...+++++++..+.+++-.++-+++||++-+. .....++..+ ...-+.++
T Consensus 108 ~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~ 187 (338)
T COG3839 108 AEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTT 187 (338)
T ss_pred HHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 2345566778888887764 233455899999999999999999999999999842 2222222222 23357899
Q ss_pred EEEeCChHHHHHhcCC
Q 015891 179 IITSRNEKLTTEMVGE 194 (398)
Q Consensus 179 IiTTR~~~v~~~~~~~ 194 (398)
|..|||..-+..+.+.
T Consensus 188 IYVTHDq~EAmtladr 203 (338)
T COG3839 188 IYVTHDQVEAMTLADR 203 (338)
T ss_pred EEEcCCHHHHHhhCCE
Confidence 9999999888877443
No 175
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.67 E-value=1.2e-07 Score=83.89 Aligned_cols=129 Identities=18% Similarity=0.202 Sum_probs=81.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--------------ccc-ceEEEEe---cCCccc------------HHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--------------QFV-PRIWVCT---MSGQKT------------AES 110 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--------------~F~-~~~~v~~---v~~~~~------------~~~ 110 (398)
.-.+++|+|++|+|||||++.+...... .. .+. ...++.. +....+ ...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 104 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDE 104 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHH
Confidence 4678999999999999999999764210 00 000 0111110 000001 122
Q ss_pred HHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 111 IVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 111 ~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
....+++.+++... .......+.+++++..+.+.+..++-++|||++. |....+.+...+. ...|..||++||+
T Consensus 105 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~ 184 (201)
T cd03231 105 QVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQ 184 (201)
T ss_pred HHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 34566777777542 2223347889999999999999999999999999 4444444444443 2347789999998
Q ss_pred hHHHHH
Q 015891 185 EKLTTE 190 (398)
Q Consensus 185 ~~v~~~ 190 (398)
......
T Consensus 185 ~~~~~~ 190 (201)
T cd03231 185 DLGLSE 190 (201)
T ss_pred chhhhh
Confidence 654443
No 176
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.67 E-value=3.2e-07 Score=90.73 Aligned_cols=105 Identities=12% Similarity=0.161 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCCCCCC---CCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---H----HHHHHHHhHcCCCCCCEEE
Q 015891 110 SIVKRILKRLGVDDGTT---NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---M----EVCKHLSKVLPRGYGERLI 179 (398)
Q Consensus 110 ~~~~~il~~l~~~~~~~---~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~----~~~~~l~~~l~~~~gs~II 179 (398)
....++++.++++++.. .+...+++++++..++..+..+|.|||+|+++. . +.++.+... ....|..+|
T Consensus 131 ~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l-~~e~g~a~l 209 (539)
T COG1123 131 KRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDL-QRELGMAVL 209 (539)
T ss_pred HHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHH-HHHcCcEEE
Confidence 34556778888877543 455689999999999999999999999999993 3 333333322 245689999
Q ss_pred EEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHHh
Q 015891 180 ITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRD 215 (398)
Q Consensus 180 iTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~ 215 (398)
++|||..|...+++...+++=+.+-+.-....+|.+
T Consensus 210 ~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~ 245 (539)
T COG1123 210 FITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245 (539)
T ss_pred EEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhc
Confidence 999999999887665444444444333444555543
No 177
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=4.7e-07 Score=82.85 Aligned_cols=131 Identities=19% Similarity=0.222 Sum_probs=81.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCC----CCcc--ccc-----------eEEEEecCCcc-----c------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPD----VKTQ--FVP-----------RIWVCTMSGQK-----T------------ 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~----~~~~--F~~-----------~~~v~~v~~~~-----~------------ 107 (398)
.-.+++|+|++|+|||||++.++.-.. .... |+. ..-+.++.+.. +
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~ 106 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLH 106 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhc
Confidence 456899999999999999999986411 0110 000 00011111110 0
Q ss_pred --------HHHHHHHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC
Q 015891 108 --------AESIVKRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP 171 (398)
Q Consensus 108 --------~~~~~~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~ 171 (398)
.......+++.+++.. ........+.+++++..+.+.+..++-+++||++. |......+...+.
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~ 186 (246)
T PRK14269 107 GMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186 (246)
T ss_pred CcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 0112345667777642 11223347899999999999999999999999998 4444444444433
Q ss_pred -CCCCCEEEEEeCChHHHHHhc
Q 015891 172 -RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 172 -~~~gs~IIiTTR~~~v~~~~~ 192 (398)
...+..||++||+.+.+..++
T Consensus 187 ~~~~~~tiii~tH~~~~~~~~~ 208 (246)
T PRK14269 187 ELSHNLSMIMVTHNMQQGKRVA 208 (246)
T ss_pred HHhCCCEEEEEecCHHHHHhhC
Confidence 123788999999988766543
No 178
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.67 E-value=5.2e-07 Score=82.33 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=56.5
Q ss_pred HHHHHHHcCCCCC--CCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891 112 VKRILKRLGVDDG--TTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR 183 (398)
Q Consensus 112 ~~~il~~l~~~~~--~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR 183 (398)
...++..+++... ..... ..+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH 202 (243)
T TIGR01978 123 LKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITH 202 (243)
T ss_pred HHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEe
Confidence 3445666676521 22222 38899999999999999999999999999 4444444444443 224788999999
Q ss_pred ChHHHHHh
Q 015891 184 NEKLTTEM 191 (398)
Q Consensus 184 ~~~v~~~~ 191 (398)
+.+.+..+
T Consensus 203 ~~~~~~~~ 210 (243)
T TIGR01978 203 YQRLLNYI 210 (243)
T ss_pred cHHHHHhh
Confidence 99877664
No 179
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.67 E-value=1.9e-07 Score=79.89 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=83.2
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecC-----------------C-------------------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMS-----------------G------------------- 104 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~-----------------~------------------- 104 (398)
.+-.+++|.|++|+||||+.+.++.- +.. -.+.+.++.+. +
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatl--L~P-~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L 102 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATL--LIP-DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARL 102 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHh--ccC-CCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHH
Confidence 56789999999999999999999754 111 11111111111 0
Q ss_pred ----cccHHHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH---HHHHHHHhHcC--CCC
Q 015891 105 ----QKTAESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM---EVCKHLSKVLP--RGY 174 (398)
Q Consensus 105 ----~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~---~~~~~l~~~l~--~~~ 174 (398)
....+.-..++.+.|++..... .-.+.+.+..++..+++++-++|-++|||++.+. .....+...+. .++
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence 0112223344444455433211 1123577888899999999999999999999943 33333333332 456
Q ss_pred CCEEEEEeCChHHHHHhcCCCceEE
Q 015891 175 GERLIITSRNEKLTTEMVGEENLHQ 199 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~~~~~~~~ 199 (398)
|-.||+.||..+-...+|+...++.
T Consensus 183 gr~viFSSH~m~EvealCDrvivlh 207 (245)
T COG4555 183 GRAVIFSSHIMQEVEALCDRVIVLH 207 (245)
T ss_pred CcEEEEecccHHHHHHhhheEEEEe
Confidence 8889999999876665555543433
No 180
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=5.3e-07 Score=84.52 Aligned_cols=132 Identities=16% Similarity=0.175 Sum_probs=84.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccce---------------EEEEecCCcc-----------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVPR---------------IWVCTMSGQK----------------- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~~---------------~~v~~v~~~~----------------- 106 (398)
.-.+++|.|++|+|||||++.+..-.... . .|+.. .-+.++.+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~ 111 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGP 111 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHH
Confidence 45689999999999999999997541110 0 00000 0011111110
Q ss_pred -----c---HHHHHHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891 107 -----T---AESIVKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-- 171 (398)
Q Consensus 107 -----~---~~~~~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-- 171 (398)
. .......+++.+++.. ........+.+++++..+.+.+..++-+++||++. |......+...+.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l 191 (290)
T PRK13634 112 MNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKL 191 (290)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 0 1123455667778752 23344558999999999999999999999999999 4444444443332
Q ss_pred -CCCCCEEEEEeCChHHHHHhcC
Q 015891 172 -RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 172 -~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...|.+||++||+.+.+..+++
T Consensus 192 ~~~~g~tviiitHd~~~~~~~~d 214 (290)
T PRK13634 192 HKEKGLTTVLVTHSMEDAARYAD 214 (290)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCC
Confidence 2247899999999887766533
No 181
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=4.1e-07 Score=94.43 Aligned_cols=80 Identities=24% Similarity=0.264 Sum_probs=58.0
Q ss_pred HHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHH
Q 015891 113 KRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKL 187 (398)
Q Consensus 113 ~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v 187 (398)
..++..+++.. ........+++++++..|.+.|..++-+|+||++. |....+.+...+... +..||++||+...
T Consensus 130 ~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-~~tviivsHd~~~ 208 (638)
T PRK10636 130 ASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-QGTLILISHDRDF 208 (638)
T ss_pred HHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCHHH
Confidence 34566666642 22333458999999999999999999999999999 445555555555422 4589999999998
Q ss_pred HHHhcC
Q 015891 188 TTEMVG 193 (398)
Q Consensus 188 ~~~~~~ 193 (398)
+..+++
T Consensus 209 l~~~~d 214 (638)
T PRK10636 209 LDPIVD 214 (638)
T ss_pred HHHhcC
Confidence 877543
No 182
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.66 E-value=6.6e-07 Score=82.27 Aligned_cols=131 Identities=15% Similarity=0.253 Sum_probs=82.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-----Ccc--ccc---------eEEEEecCCcc--------c----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-----KTQ--FVP---------RIWVCTMSGQK--------T---------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-----~~~--F~~---------~~~v~~v~~~~--------~---------- 107 (398)
.-.+++|+|++|+|||||++.++.-... ... ++. ...+.++.+.. +
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~ 107 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCL 107 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHH
Confidence 4568999999999999999999865211 010 100 00011111110 0
Q ss_pred ------HHHHHHHHHHHcCCCCC----CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---
Q 015891 108 ------AESIVKRILKRLGVDDG----TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--- 171 (398)
Q Consensus 108 ------~~~~~~~il~~l~~~~~----~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--- 171 (398)
.......+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+.
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~ 187 (254)
T PRK10418 108 ALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIV 187 (254)
T ss_pred HcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence 01223456666776541 2233458899999999999999999999999999 4444334433332
Q ss_pred CCCCCEEEEEeCChHHHHHhc
Q 015891 172 RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~v~~~~~ 192 (398)
...|..||++||+......++
T Consensus 188 ~~~g~til~~sH~~~~~~~~~ 208 (254)
T PRK10418 188 QKRALGMLLVTHDMGVVARLA 208 (254)
T ss_pred HhcCcEEEEEecCHHHHHHhC
Confidence 224788999999988766543
No 183
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.66 E-value=1.3e-06 Score=84.45 Aligned_cols=182 Identities=15% Similarity=0.178 Sum_probs=104.4
Q ss_pred CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCC--ccccc-----------------eE
Q 015891 37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVK--TQFVP-----------------RI 97 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~-----------------~~ 97 (398)
-.+++|.+..++.|..++.. ..-...+.++|++|+||||+|+.+.....-. ..+.. ..
T Consensus 13 ~~~iig~~~~~~~l~~~~~~---~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKN---GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred HhhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 36789999999999998864 2234578899999999999999987652100 11110 11
Q ss_pred EEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH--HHHHHHHhHcCC-CC
Q 015891 98 WVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM--EVCKHLSKVLPR-GY 174 (398)
Q Consensus 98 ~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~-~~ 174 (398)
++. -...... ..++.++..+... -+.+++-++|+|+++.. ...+.+...+.. ..
T Consensus 90 ~~~-~~~~~~~-~~~~~l~~~~~~~---------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~ 146 (355)
T TIGR02397 90 EID-AASNNGV-DDIREILDNVKYA---------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPE 146 (355)
T ss_pred Eee-ccccCCH-HHHHHHHHHHhcC---------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCcc
Confidence 111 0000000 0111111111100 01234569999999743 444555555543 23
Q ss_pred CCEEEEEeCChH-HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 175 GERLIITSRNEK-LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 175 gs~IIiTTR~~~-v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
.+.+|++|.+.. +...+......+++.+++. ++...++.+.+...+...++ +.+..+++.++|.|..+..
T Consensus 147 ~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~-~~l~~~l~~~~~~~g~~i~~---~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 147 HVVFILATTEPHKIPATILSRCQRFDFKRIPL-EDIVERLKKILDKEGIKIED---EALELIARAADGSLRDALS 217 (355)
T ss_pred ceeEEEEeCCHHHHHHHHHhheeEEEcCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCChHHHHH
Confidence 566666765544 4444444456889999888 55666666644433333222 3677788889998876554
No 184
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=4.8e-07 Score=88.06 Aligned_cols=132 Identities=13% Similarity=0.105 Sum_probs=84.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc------------------ceEEEEe---cCCccc----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV------------------PRIWVCT---MSGQKT---------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~------------------~~~~v~~---v~~~~~---------- 107 (398)
.-.+++|+|++|+|||||++.+..-.... . .|+ ...++.. +....+
T Consensus 53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~ 132 (400)
T PRK10070 53 EGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132 (400)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 45689999999999999999997642110 0 000 1111110 000001
Q ss_pred --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
......++++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. .
T Consensus 133 ~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~ 212 (400)
T PRK10070 133 LAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212 (400)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 01233456777777643 2333458999999999999999999999999999 4444444444442 2
Q ss_pred CCCCEEEEEeCChHHHHHhcC
Q 015891 173 GYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~~ 193 (398)
..+.+||++||+.+.+..+++
T Consensus 213 ~~g~TIIivTHd~~~~~~~~D 233 (400)
T PRK10070 213 KHQRTIVFISHDLDEAMRIGD 233 (400)
T ss_pred HCCCeEEEEECCHHHHHHhCC
Confidence 247889999999987766533
No 185
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.66 E-value=4.1e-07 Score=92.18 Aligned_cols=81 Identities=11% Similarity=0.183 Sum_probs=59.3
Q ss_pred HHHHHHHcCCC-C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVD-D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~-~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
...++..+++. . ........+++++++..+.+.+..++-+||||++. |....+.+...+. ...|..||++||+
T Consensus 383 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd 462 (510)
T PRK15439 383 LERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSD 462 (510)
T ss_pred HHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 44667777875 2 23334458999999999999999999999999999 4444444444432 1247889999999
Q ss_pred hHHHHHhc
Q 015891 185 EKLTTEMV 192 (398)
Q Consensus 185 ~~v~~~~~ 192 (398)
.+.+..++
T Consensus 463 ~~~i~~~~ 470 (510)
T PRK15439 463 LEEIEQMA 470 (510)
T ss_pred HHHHHHhC
Confidence 98887654
No 186
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=4.3e-07 Score=84.98 Aligned_cols=132 Identities=20% Similarity=0.234 Sum_probs=84.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc------------------eEEEEe----------cCCc-----
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP------------------RIWVCT----------MSGQ----- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~------------------~~~v~~----------v~~~----- 105 (398)
.-.+++|+|++|+|||||++.++...... . .|+. +.++.. +..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~ 111 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGP 111 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhH
Confidence 45689999999999999999997542110 0 0000 111110 0000
Q ss_pred ----cc---HHHHHHHHHHHcCCC-C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891 106 ----KT---AESIVKRILKRLGVD-D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-- 171 (398)
Q Consensus 106 ----~~---~~~~~~~il~~l~~~-~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-- 171 (398)
.. .......++..+++. . ........+.++.++..+.+.+..++-+++||++. |......+...+.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l 191 (286)
T PRK13646 112 KNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL 191 (286)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 00 112344667777775 2 22334558999999999999999999999999999 4444444444443
Q ss_pred -CCCCCEEEEEeCChHHHHHhcC
Q 015891 172 -RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 172 -~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...|.+||++||+.+.+..+++
T Consensus 192 ~~~~g~tvl~vtH~~~~~~~~~d 214 (286)
T PRK13646 192 QTDENKTIILVSHDMNEVARYAD 214 (286)
T ss_pred HHhCCCEEEEEecCHHHHHHhCC
Confidence 2347899999999887665433
No 187
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.66 E-value=1.5e-07 Score=91.21 Aligned_cols=178 Identities=15% Similarity=0.247 Sum_probs=100.0
Q ss_pred CCCCcccchhhHHHHHHHHhccC---------CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891 36 PPANVHGFANEELHLQKLLSNRG---------TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK 106 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~~~---------~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~ 106 (398)
..+++.|++..+++|.+.+.... +-...+.+.|+|++|+|||++|+++++. ....| +. +..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~-v~~-- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IR-VVG-- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Ee-cch--
Confidence 34678999999999998775310 1123567999999999999999999987 44333 22 211
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHc---
Q 015891 107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVL--- 170 (398)
Q Consensus 107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l--- 170 (398)
..+.... ++ .........+...-...+.+|+|||++.. .....+...+
T Consensus 190 --~~l~~~~---~g-----------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~l 253 (364)
T TIGR01242 190 --SELVRKY---IG-----------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEL 253 (364)
T ss_pred --HHHHHHh---hh-----------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHh
Confidence 1111110 00 11111222233333456789999998742 1112222222
Q ss_pred C---CCCCCEEEEEeCChHHHHH-h---cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891 171 P---RGYGERLIITSRNEKLTTE-M---VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN 243 (398)
Q Consensus 171 ~---~~~gs~IIiTTR~~~v~~~-~---~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 243 (398)
. ...+.+||.||........ + ...+..+++++.+. ++...+|+..........+- ....+++.+.|..
T Consensus 254 d~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~-~~r~~Il~~~~~~~~l~~~~----~~~~la~~t~g~s 328 (364)
T TIGR01242 254 DGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDF-EGRLEILKIHTRKMKLAEDV----DLEAIAKMTEGAS 328 (364)
T ss_pred hCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCH-HHHHHHHHHHHhcCCCCccC----CHHHHHHHcCCCC
Confidence 1 2346778888876432221 1 12256788977776 77888887654332211111 3456777777765
Q ss_pred h
Q 015891 244 E 244 (398)
Q Consensus 244 l 244 (398)
-
T Consensus 329 g 329 (364)
T TIGR01242 329 G 329 (364)
T ss_pred H
Confidence 3
No 188
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=9.6e-07 Score=84.57 Aligned_cols=199 Identities=15% Similarity=0.190 Sum_probs=112.5
Q ss_pred CCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc----ccceEEEEecCCcccHHHH
Q 015891 36 PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ----FVPRIWVCTMSGQKTAESI 111 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~~v~~v~~~~~~~~~ 111 (398)
....++|-++..+.+...+.. ..-...+.|+|+.|+||||+|..+++. +... +.... ..........
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~---grl~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~~----~~~~~~~c~~ 91 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYRE---GKLHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPET----LADPDPASPV 91 (351)
T ss_pred chhhccCcHHHHHHHHHHHHc---CCCCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCccc----cCCCCCCCHH
Confidence 346799999999999999964 233557999999999999999999776 2211 11110 1111111112
Q ss_pred HHHHHHH-------cCCCCCCC--CCcCCCchHHHHHHHHHHHh-----CCCcEEEecCCC--CHHHHHHHHhHcCC-CC
Q 015891 112 VKRILKR-------LGVDDGTT--NSFEGQGLAFLDYVLQQQLI-----GKRYLIVLDDFE--DMEVCKHLSKVLPR-GY 174 (398)
Q Consensus 112 ~~~il~~-------l~~~~~~~--~~~~~~~~~~~~~~l~~~l~-----~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~ 174 (398)
.+.+... +....... .....-..++.+ .+...+. ++..++|+|+++ +....+.|...+.. ..
T Consensus 92 c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 92 WRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred HHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 2222211 10000000 000112234433 3444443 356799999999 44555666666642 23
Q ss_pred CCEEEEEeCC-hHHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccC
Q 015891 175 GERLIITSRN-EKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFP 250 (398)
Q Consensus 175 gs~IIiTTR~-~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a 250 (398)
++.+|++|+. ..+...+......+.+.|++. ++...++.+...... . ..+....|++.++|.|.....+.
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~-~~~~~~L~~~~~~~~--~---~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDD-DELKKALSHLGSSQG--S---DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCH-HHHHHHHHHhhcccC--C---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 4555555544 444444545567999999999 667777766322211 1 12256678899999998765543
No 189
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.65 E-value=5.3e-07 Score=83.00 Aligned_cols=137 Identities=16% Similarity=0.159 Sum_probs=84.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc-----------eEEEEecCCcc------c--------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP-----------RIWVCTMSGQK------T-------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~-----------~~~v~~v~~~~------~-------------- 107 (398)
.-.+++|+|++|+|||||++.+...... .. .|+. ...+.++.+.. +
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (256)
T TIGR03873 26 PGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRS 105 (256)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhh
Confidence 4578999999999999999999764211 00 0100 00011111110 0
Q ss_pred --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891 108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG 173 (398)
Q Consensus 108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~ 173 (398)
.......+++.+++... .......+.++.++..+.+.+..++-+++||++. |....+.+...+. ..
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (256)
T TIGR03873 106 LWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA 185 (256)
T ss_pred hccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh
Confidence 01123455666666432 2223348899999999999999999999999999 4444444444443 22
Q ss_pred CCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 174 YGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
.+..||++||+......+++ +++.+
T Consensus 186 ~~~tiii~sH~~~~~~~~~d--~i~~l 210 (256)
T TIGR03873 186 TGVTVVAALHDLNLAASYCD--HVVVL 210 (256)
T ss_pred cCCEEEEEeCCHHHHHHhCC--EEEEE
Confidence 47789999999988766433 44444
No 190
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=2.9e-07 Score=85.86 Aligned_cols=128 Identities=17% Similarity=0.129 Sum_probs=82.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc--------------eEEEEe----------cCCc---------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP--------------RIWVCT----------MSGQ--------- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~--------------~~~v~~----------v~~~--------- 105 (398)
.-.+++|+|++|+|||||++.++.-... .. .|+. +.++.. +..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG 111 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC
Confidence 4578999999999999999999754110 00 0000 011110 0000
Q ss_pred cc---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891 106 KT---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG 175 (398)
Q Consensus 106 ~~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g 175 (398)
.+ .......+++.+++... .......+.++.++..+.+++..++-++|||++. |....+.+...+. ...|
T Consensus 112 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g 191 (279)
T PRK13650 112 IPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ 191 (279)
T ss_pred CCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 00 11234556677777542 2233458999999999999999999999999999 4444444444443 2247
Q ss_pred CEEEEEeCChHHHH
Q 015891 176 ERLIITSRNEKLTT 189 (398)
Q Consensus 176 s~IIiTTR~~~v~~ 189 (398)
.+||++||+.....
T Consensus 192 ~tilivtH~~~~~~ 205 (279)
T PRK13650 192 MTVISITHDLDEVA 205 (279)
T ss_pred CEEEEEecCHHHHH
Confidence 89999999987764
No 191
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.65 E-value=2.8e-07 Score=77.67 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=92.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEec---------------------------CCc--------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTM---------------------------SGQ-------- 105 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v---------------------------~~~-------- 105 (398)
..-.+++|.|++|+|||||...++.= ...-.+.+|+... .++
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF---~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~ 99 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGF---ETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG 99 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhc---cCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence 34578999999999999999999642 1111122333211 110
Q ss_pred ----ccHHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---H----HHHHHHHhHcCCC
Q 015891 106 ----KTAESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---M----EVCKHLSKVLPRG 173 (398)
Q Consensus 106 ----~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~----~~~~~l~~~l~~~ 173 (398)
....+.+..++.+.|+.... ..+...+++++++..++++|-..+-+++||++.+ + +.+..+.... ..
T Consensus 100 LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~-~E 178 (231)
T COG3840 100 LKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC-DE 178 (231)
T ss_pred cccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH-Hh
Confidence 11234566778888877643 2344589999999999999999999999999984 3 3333333332 45
Q ss_pred CCCEEEEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHH
Q 015891 174 YGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIY 213 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~ 213 (398)
.+-++++.||..+-+..+......+.=+.......+..+|
T Consensus 179 ~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 179 RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 6788999999876665543333333333344433344444
No 192
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=3.6e-07 Score=85.54 Aligned_cols=132 Identities=19% Similarity=0.247 Sum_probs=84.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC------------Cc------ccc-ceEEEEe----------cCCc-------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV------------KT------QFV-PRIWVCT----------MSGQ------- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~------------~~------~F~-~~~~v~~----------v~~~------- 105 (398)
.-.+++|+|++|+|||||++.+..-... .. .+. .+.++.. +...
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 111 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN 111 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence 4568999999999999999999754110 00 000 0111110 0000
Q ss_pred --cc---HHHHHHHHHHHcCCC--C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---
Q 015891 106 --KT---AESIVKRILKRLGVD--D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--- 171 (398)
Q Consensus 106 --~~---~~~~~~~il~~l~~~--~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--- 171 (398)
.. .......+++.+++. . ........+.+++++..+.+.|..++-+||+|++. |......+...+.
T Consensus 112 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~ 191 (287)
T PRK13637 112 LGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELH 191 (287)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 00 112345677777875 2 23334458999999999999999999999999999 4444444444443
Q ss_pred CCCCCEEEEEeCChHHHHHhcC
Q 015891 172 RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...|.+||++||+.+.+..+++
T Consensus 192 ~~~g~tvi~vtHd~~~~~~~~d 213 (287)
T PRK13637 192 KEYNMTIILVSHSMEDVAKLAD 213 (287)
T ss_pred HhcCCEEEEEeCCHHHHHHhCC
Confidence 2237899999999887765433
No 193
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=4.3e-07 Score=83.28 Aligned_cols=86 Identities=9% Similarity=0.064 Sum_probs=58.1
Q ss_pred HHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeC
Q 015891 113 KRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSR 183 (398)
Q Consensus 113 ~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR 183 (398)
.++++.+++.. ......+.+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||
T Consensus 124 ~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 203 (250)
T PRK14247 124 RWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTH 203 (250)
T ss_pred HHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 44556666532 12233458999999999999999999999999998 4444444444433 123678999999
Q ss_pred ChHHHHHhcCCCceEEc
Q 015891 184 NEKLTTEMVGEENLHQL 200 (398)
Q Consensus 184 ~~~v~~~~~~~~~~~~l 200 (398)
+......++ ++++.+
T Consensus 204 ~~~~~~~~~--d~i~~l 218 (250)
T PRK14247 204 FPQQAARIS--DYVAFL 218 (250)
T ss_pred CHHHHHHhc--CEEEEE
Confidence 988776543 344444
No 194
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.65 E-value=3.5e-07 Score=81.12 Aligned_cols=130 Identities=15% Similarity=0.193 Sum_probs=87.4
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE-----------------e------------cC--------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC-----------------T------------MS-------- 103 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~-----------------~------------v~-------- 103 (398)
+.-.+++++|++|+||||+.+++-+- + ..-.+.+.+. | +.
T Consensus 25 ~~gef~vliGpSGsGKTTtLkMINrL--i-ept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~ 101 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTTLKMINRL--I-EPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPK 101 (309)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhcc--c-CCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhh
Confidence 45678899999999999999999442 1 1111111111 0 00
Q ss_pred ----CcccHHHHHHHHHHHcCCCCC---CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CH---HHHHHHHhHc
Q 015891 104 ----GQKTAESIVKRILKRLGVDDG---TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DM---EVCKHLSKVL 170 (398)
Q Consensus 104 ----~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~---~~~~~l~~~l 170 (398)
......+...+++..+++++. ...+.+.+++++++.-+.++|...+-++++|++. |+ ..++.....+
T Consensus 102 L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~l 181 (309)
T COG1125 102 LLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL 181 (309)
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHH
Confidence 112344556788888888763 3445668999999999999999999999999998 33 2222222222
Q ss_pred CCCCCCEEEEEeCChHHHHHhcC
Q 015891 171 PRGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 171 ~~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...-+.+||+.|||.+-|-.+.+
T Consensus 182 q~~l~kTivfVTHDidEA~kLad 204 (309)
T COG1125 182 QKELGKTIVFVTHDIDEALKLAD 204 (309)
T ss_pred HHHhCCEEEEEecCHHHHHhhhc
Confidence 23458899999999988877643
No 195
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=1.4e-07 Score=85.98 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=80.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc------------eEEEEecCCcc------c-------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP------------RIWVCTMSGQK------T------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~------------~~~v~~v~~~~------~------------- 107 (398)
.-.+++|.|++|+|||||++.+...... .. .++. ..-+.++.+.. +
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 107 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD 107 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc
Confidence 4578999999999999999999764211 00 0000 00011111110 0
Q ss_pred ------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCC
Q 015891 108 ------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYG 175 (398)
Q Consensus 108 ------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~g 175 (398)
......++++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g 187 (241)
T PRK10895 108 DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSG 187 (241)
T ss_pred ccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 11234456666666432 1223347899999999999999999999999999 4443333333332 2247
Q ss_pred CEEEEEeCChHHHHHh
Q 015891 176 ERLIITSRNEKLTTEM 191 (398)
Q Consensus 176 s~IIiTTR~~~v~~~~ 191 (398)
..||++||+......+
T Consensus 188 ~tiii~sH~~~~~~~~ 203 (241)
T PRK10895 188 LGVLITDHNVRETLAV 203 (241)
T ss_pred CEEEEEEcCHHHHHHh
Confidence 7899999998766554
No 196
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.65 E-value=6.2e-07 Score=82.68 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=57.9
Q ss_pred HHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891 113 KRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN 184 (398)
Q Consensus 113 ~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~ 184 (398)
.++++.+++.. ........+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+
T Consensus 132 ~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~ 211 (258)
T PRK11701 132 GDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211 (258)
T ss_pred HHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 45566777753 12334458999999999999999999999999999 4444444444432 2237899999999
Q ss_pred hHHHHHhcC
Q 015891 185 EKLTTEMVG 193 (398)
Q Consensus 185 ~~v~~~~~~ 193 (398)
...+..+++
T Consensus 212 ~~~~~~~~d 220 (258)
T PRK11701 212 LAVARLLAH 220 (258)
T ss_pred HHHHHHhcC
Confidence 988876433
No 197
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.65 E-value=7.2e-07 Score=81.39 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=57.2
Q ss_pred HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChH
Q 015891 112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEK 186 (398)
Q Consensus 112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~ 186 (398)
...+++.+++... .......+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||+|||+.+
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 203 (242)
T TIGR03411 124 IEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDME 203 (242)
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 4556667777542 2223348899999999999999999999999999 4444444444433 122578999999988
Q ss_pred HHHHhc
Q 015891 187 LTTEMV 192 (398)
Q Consensus 187 v~~~~~ 192 (398)
.+..++
T Consensus 204 ~~~~~~ 209 (242)
T TIGR03411 204 FVRSIA 209 (242)
T ss_pred HHHHhC
Confidence 776643
No 198
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.65 E-value=4.8e-07 Score=89.77 Aligned_cols=129 Identities=15% Similarity=0.128 Sum_probs=83.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE----------ecCCcccH------------------HHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC----------TMSGQKTA------------------ESIVK 113 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~----------~v~~~~~~------------------~~~~~ 113 (398)
.-.+++|+|++|+|||||++.++.-... ..+.+++. ......+. .....
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~P---~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~ 125 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTMP---NKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIP 125 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC---CceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHH
Confidence 4568999999999999999999876211 11111110 01111111 11223
Q ss_pred HHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHH
Q 015891 114 RILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKL 187 (398)
Q Consensus 114 ~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v 187 (398)
.+++.+++... .......+++++++..+++++...+-+|+||++. |....+.+...+. ...|..||++||+...
T Consensus 126 elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~ 205 (549)
T PRK13545 126 EIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205 (549)
T ss_pred HHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 45666666542 2233458999999999999999999999999999 4444444444432 2347899999999887
Q ss_pred HHHhcC
Q 015891 188 TTEMVG 193 (398)
Q Consensus 188 ~~~~~~ 193 (398)
+..+++
T Consensus 206 i~~l~D 211 (549)
T PRK13545 206 VKSFCT 211 (549)
T ss_pred HHHhCC
Confidence 766533
No 199
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.64 E-value=6.3e-07 Score=80.92 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=56.5
Q ss_pred HHHHHHHcCCCCCC-CC--CcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891 112 VKRILKRLGVDDGT-TN--SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR 183 (398)
Q Consensus 112 ~~~il~~l~~~~~~-~~--~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR 183 (398)
...+++.+++.... .. ....+.+++++..+.+.+..++-+++||++. |....+.+...+. ... ..||++||
T Consensus 120 ~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH 198 (227)
T cd03260 120 VEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTH 198 (227)
T ss_pred HHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEec
Confidence 34566777775431 22 2458999999999999999999999999999 4444444444443 223 78999999
Q ss_pred ChHHHHHh
Q 015891 184 NEKLTTEM 191 (398)
Q Consensus 184 ~~~v~~~~ 191 (398)
+...+..+
T Consensus 199 ~~~~~~~~ 206 (227)
T cd03260 199 NMQQAARV 206 (227)
T ss_pred cHHHHHHh
Confidence 98876654
No 200
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.64 E-value=5.5e-07 Score=81.34 Aligned_cols=168 Identities=18% Similarity=0.193 Sum_probs=93.0
Q ss_pred CCcc-cchhh-HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHH
Q 015891 38 ANVH-GFANE-ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRI 115 (398)
Q Consensus 38 ~~~v-GR~~~-~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~i 115 (398)
++|+ |.... +..+.++.. .......+.|+|++|+|||+||+.+++. ....-....+++ ..... ..
T Consensus 18 d~f~~~~~~~~~~~l~~~~~---~~~~~~~~~l~G~~G~GKT~La~ai~~~--~~~~~~~~~~i~-~~~~~------~~- 84 (227)
T PRK08903 18 DNFVAGENAELVARLRELAA---GPVADRFFYLWGEAGSGRSHLLQALVAD--ASYGGRNARYLD-AASPL------LA- 84 (227)
T ss_pred cccccCCcHHHHHHHHHHHh---ccCCCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEe-hHHhH------HH-
Confidence 5555 44333 344444443 2234568899999999999999999886 211111234444 21110 00
Q ss_pred HHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH--HHHHHHHhHcC--CCCCC-EEEEEeCChHH---
Q 015891 116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM--EVCKHLSKVLP--RGYGE-RLIITSRNEKL--- 187 (398)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~--~~~gs-~IIiTTR~~~v--- 187 (398)
+ ......-+||+||++.. ...+.+...+. ...+. .+|+|++....
T Consensus 85 ---~------------------------~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~ 137 (227)
T PRK08903 85 ---F------------------------DFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALP 137 (227)
T ss_pred ---H------------------------hhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCC
Confidence 0 01123458999999833 33344444443 12333 46666664321
Q ss_pred -----HHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccC
Q 015891 188 -----TTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFP 250 (398)
Q Consensus 188 -----~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a 250 (398)
...+ .....++++||+.. ....++.+.....+...++ +....+++.+.|.+..+..+.
T Consensus 138 l~~~L~sr~-~~~~~i~l~pl~~~-~~~~~l~~~~~~~~v~l~~---~al~~L~~~~~gn~~~l~~~l 200 (227)
T PRK08903 138 LREDLRTRL-GWGLVYELKPLSDA-DKIAALKAAAAERGLQLAD---EVPDYLLTHFRRDMPSLMALL 200 (227)
T ss_pred CCHHHHHHH-hcCeEEEecCCCHH-HHHHHHHHHHHHcCCCCCH---HHHHHHHHhccCCHHHHHHHH
Confidence 1122 22468899999984 4555665544333333333 366778888999998876643
No 201
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=4.3e-07 Score=94.26 Aligned_cols=131 Identities=19% Similarity=0.229 Sum_probs=86.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccceEEEEecCCc--------cc------------HHHHHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVPRIWVCTMSGQ--------KT------------AESIVKRILKR 118 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~~~~v~~v~~~--------~~------------~~~~~~~il~~ 118 (398)
.-.+++|+|++|+|||||++.+...... ... +....-+.++.+. .. .......++..
T Consensus 337 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 416 (638)
T PRK10636 337 PGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGG 416 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHH
Confidence 4569999999999999999999875211 111 1111111112221 01 11223456777
Q ss_pred cCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891 119 LGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 119 l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
+++.. ........+++++++..+.+.+..++-+||||++. |....+.+...+..-. ..||++||+...+..+++
T Consensus 417 ~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~-gtvi~vSHd~~~~~~~~d 495 (638)
T PRK10636 417 FGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFE-GALVVVSHDRHLLRSTTD 495 (638)
T ss_pred cCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcC-CeEEEEeCCHHHHHHhCC
Confidence 77743 22334458999999999999999999999999999 4555555555554223 489999999998877543
No 202
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.64 E-value=4.5e-07 Score=84.10 Aligned_cols=131 Identities=18% Similarity=0.139 Sum_probs=81.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc-----------------ceEEEEe---cCCcccHH---------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV-----------------PRIWVCT---MSGQKTAE--------- 109 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~-----------------~~~~v~~---v~~~~~~~--------- 109 (398)
.-.+++|+|++|+|||||++.++.-... .. .|+ ...++.. +....+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 111 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE 111 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764210 00 010 0112110 00000111
Q ss_pred ----------HHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 110 ----------SIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 110 ----------~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
.....++..+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. .
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 191 (269)
T PRK11831 112 HTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNS 191 (269)
T ss_pred ccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 122335566666542 2223348999999999999999999999999999 4444444444443 2
Q ss_pred CCCCEEEEEeCChHHHHHhc
Q 015891 173 GYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~ 192 (398)
..|..||++||+...+..++
T Consensus 192 ~~g~tiiivsH~~~~~~~~~ 211 (269)
T PRK11831 192 ALGVTCVVVSHDVPEVLSIA 211 (269)
T ss_pred hcCcEEEEEecCHHHHHHhh
Confidence 23789999999987766543
No 203
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=5e-07 Score=83.11 Aligned_cols=81 Identities=11% Similarity=0.148 Sum_probs=57.3
Q ss_pred HHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCCh
Q 015891 113 KRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNE 185 (398)
Q Consensus 113 ~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~ 185 (398)
..+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+.
T Consensus 135 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~ 214 (255)
T PRK11300 135 ATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM 214 (255)
T ss_pred HHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 445566666432 2223347899999999999999999999999999 4444444444443 22378999999999
Q ss_pred HHHHHhcC
Q 015891 186 KLTTEMVG 193 (398)
Q Consensus 186 ~v~~~~~~ 193 (398)
..+..+++
T Consensus 215 ~~~~~~~d 222 (255)
T PRK11300 215 KLVMGISD 222 (255)
T ss_pred HHHHHhCC
Confidence 88766533
No 204
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.64 E-value=2.5e-07 Score=85.80 Aligned_cols=175 Identities=17% Similarity=0.249 Sum_probs=101.9
Q ss_pred CCcccchhhHHH---HHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHH
Q 015891 38 ANVHGFANEELH---LQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKR 114 (398)
Q Consensus 38 ~~~vGR~~~~~~---l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~ 114 (398)
.++||.+..+.+ |..++ ..+....+.+||++|+||||||+.+.... +.+- ..||. .+-...-..-++.
T Consensus 138 ~dyvGQ~hlv~q~gllrs~i----eq~~ipSmIlWGppG~GKTtlArlia~ts--k~~S--yrfve-lSAt~a~t~dvR~ 208 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLI----EQNRIPSMILWGPPGTGKTTLARLIASTS--KKHS--YRFVE-LSATNAKTNDVRD 208 (554)
T ss_pred HHhcchhhhcCcchHHHHHH----HcCCCCceEEecCCCCchHHHHHHHHhhc--CCCc--eEEEE-EeccccchHHHHH
Confidence 456776655443 44444 34678889999999999999999999873 2221 34555 5543333333444
Q ss_pred HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEE--EEeCChHHH-
Q 015891 115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLI--ITSRNEKLT- 188 (398)
Q Consensus 115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~II--iTTR~~~v~- 188 (398)
++++- .-...+..++.+|++|+|. +..+.+. ++|. ..|.-++ .||.++.+-
T Consensus 209 ife~a--------------------q~~~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFql 265 (554)
T KOG2028|consen 209 IFEQA--------------------QNEKSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQL 265 (554)
T ss_pred HHHHH--------------------HHHHhhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccch
Confidence 44431 1112345678999999998 4444443 3453 3454444 477776432
Q ss_pred -HHhcCCCceEEcCCCCChhHHHHHHHhhh---CCCCC---cchH----HHHHHHHHHHHhcCCCchh
Q 015891 189 -TEMVGEENLHQLQPLSDQESCWLIYRDSV---RDKDA---QLKS----QARKDLEEKLEKLQGQNED 245 (398)
Q Consensus 189 -~~~~~~~~~~~l~~L~~~e~~~~l~~~~~---~~~~~---~~~~----~~~~~~~~I~~~c~GlPla 245 (398)
..+.....++.|++|.. ++...++.++. +.... ..+. ....+.+-++.-|.|-..+
T Consensus 266 n~aLlSRC~VfvLekL~~-n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 266 NAALLSRCRVFVLEKLPV-NAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred hHHHHhccceeEeccCCH-HHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 22234578999999999 66677776632 22111 1111 2333555566667776654
No 205
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=4.7e-07 Score=86.20 Aligned_cols=83 Identities=13% Similarity=0.220 Sum_probs=58.8
Q ss_pred HHHHHHHcCCCCC----CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEE
Q 015891 112 VKRILKRLGVDDG----TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIIT 181 (398)
Q Consensus 112 ~~~il~~l~~~~~----~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiT 181 (398)
..++++.+++... .......++++.++..+.+.+..++-+||+|++. |......+...+. ...|..||++
T Consensus 131 ~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~i 210 (326)
T PRK11022 131 AIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLI 210 (326)
T ss_pred HHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4456777777541 2334458999999999999999999999999999 3332223332222 2347899999
Q ss_pred eCChHHHHHhcCC
Q 015891 182 SRNEKLTTEMVGE 194 (398)
Q Consensus 182 TR~~~v~~~~~~~ 194 (398)
||+..++..+++.
T Consensus 211 THdl~~~~~~adr 223 (326)
T PRK11022 211 THDLALVAEAAHK 223 (326)
T ss_pred eCCHHHHHHhCCE
Confidence 9999888765443
No 206
>PRK09087 hypothetical protein; Validated
Probab=98.64 E-value=6.9e-07 Score=80.43 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=85.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL 141 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l 141 (398)
..+.+.|+|++|+|||+|++.++.. .. ..+++ .. .....++
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~--~~-----~~~i~-~~------~~~~~~~------------------------- 83 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREK--SD-----ALLIH-PN------EIGSDAA------------------------- 83 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh--cC-----CEEec-HH------HcchHHH-------------------------
Confidence 3467999999999999999999876 21 12443 10 0001111
Q ss_pred HHHHhCCCcEEEecCCCCH-HHHHHHHhHcC--CCCCCEEEEEeCC---------hHHHHHhcCCCceEEcCCCCChhHH
Q 015891 142 QQQLIGKRYLIVLDDFEDM-EVCKHLSKVLP--RGYGERLIITSRN---------EKLTTEMVGEENLHQLQPLSDQESC 209 (398)
Q Consensus 142 ~~~l~~k~~LlVLDdv~~~-~~~~~l~~~l~--~~~gs~IIiTTR~---------~~v~~~~~~~~~~~~l~~L~~~e~~ 209 (398)
..+. .-+|++||++.. ...+.+...+. ...|..+|+|++. .++.+.+ ....++++++++. +..
T Consensus 84 -~~~~--~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl-~~gl~~~l~~pd~-e~~ 158 (226)
T PRK09087 84 -NAAA--EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRL-KAATVVEIGEPDD-ALL 158 (226)
T ss_pred -Hhhh--cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHH-hCCceeecCCCCH-HHH
Confidence 0111 138889999732 01122333333 2347789998873 3344443 4567899999998 778
Q ss_pred HHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 210 WLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
..++.+.+...+...++ +...-|++++.|-..++..
T Consensus 159 ~~iL~~~~~~~~~~l~~---ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 159 SQVIFKLFADRQLYVDP---HVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHHhhhhHHHHHH
Confidence 88888876554444433 3666777778777666543
No 207
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.64 E-value=4.3e-07 Score=91.86 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=58.5
Q ss_pred HHHHHHHcCCC-C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVD-D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~-~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
..+++..+++. . ........+++++++..+++.+..++-+++||++. |....+.+...+. ...|..||++||+
T Consensus 375 ~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd 454 (501)
T PRK10762 375 VSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454 (501)
T ss_pred HHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 45667777774 2 23334458999999999999999999999999999 4443333333332 2347889999999
Q ss_pred hHHHHHhc
Q 015891 185 EKLTTEMV 192 (398)
Q Consensus 185 ~~v~~~~~ 192 (398)
.+.+..++
T Consensus 455 ~~~~~~~~ 462 (501)
T PRK10762 455 MPEVLGMS 462 (501)
T ss_pred HHHHHhhC
Confidence 88776653
No 208
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.64 E-value=6.4e-07 Score=82.30 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=56.7
Q ss_pred HHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891 113 KRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN 184 (398)
Q Consensus 113 ~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~ 184 (398)
..+++.+++.. ........+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+
T Consensus 129 ~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~ 208 (253)
T TIGR02323 129 HDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208 (253)
T ss_pred HHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45566777642 12233448899999999999999999999999999 4444444444432 2247899999999
Q ss_pred hHHHHHh
Q 015891 185 EKLTTEM 191 (398)
Q Consensus 185 ~~v~~~~ 191 (398)
.+.+..+
T Consensus 209 ~~~~~~~ 215 (253)
T TIGR02323 209 LGVARLL 215 (253)
T ss_pred HHHHHHh
Confidence 8877654
No 209
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.64 E-value=8.6e-06 Score=80.79 Aligned_cols=163 Identities=10% Similarity=0.190 Sum_probs=98.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCccc--cceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF--VPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV 140 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~ 140 (398)
...+.|+|+.|+|||+|++++++. +.... ..++++. ...+...+...++... .....
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~-------~~~f~~~~~~~l~~~~------------~~~~~ 199 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS-------GDEFARKAVDILQKTH------------KEIEQ 199 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE-------HHHHHHHHHHHHHHhh------------hHHHH
Confidence 456899999999999999999885 22211 1233443 2345555555443210 01122
Q ss_pred HHHHHhCCCcEEEecCCCC----HHHHHHHHhHcC--CCCCCEEEEEeCCh---------HHHHHhcCCCceEEcCCCCC
Q 015891 141 LQQQLIGKRYLIVLDDFED----MEVCKHLSKVLP--RGYGERLIITSRNE---------KLTTEMVGEENLHQLQPLSD 205 (398)
Q Consensus 141 l~~~l~~k~~LlVLDdv~~----~~~~~~l~~~l~--~~~gs~IIiTTR~~---------~v~~~~~~~~~~~~l~~L~~ 205 (398)
+...+. +.-+||+||+.. ..+.+.+...+. ...+..||+|+... .+...+ ...-++.+++++.
T Consensus 200 ~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~-~~Gl~~~L~~pd~ 277 (450)
T PRK14087 200 FKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRF-NMGLSIAIQKLDN 277 (450)
T ss_pred HHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHH-hCCceeccCCcCH
Confidence 333333 456899999973 344455555554 33456788887643 222333 2356788999998
Q ss_pred hhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccC
Q 015891 206 QESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFP 250 (398)
Q Consensus 206 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a 250 (398)
++...++.+.+...+... ....+...-|++.+.|.|..+..++
T Consensus 278 -e~r~~iL~~~~~~~gl~~-~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 278 -KTATAIIKKEIKNQNIKQ-EVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred -HHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHccCCCHHHHHHHH
Confidence 778888887554332210 2234477889999999998876543
No 210
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.64 E-value=5.3e-07 Score=90.89 Aligned_cols=195 Identities=12% Similarity=0.126 Sum_probs=105.5
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
.+++|++..++.+...+.. ..-...+.++|+.|+||||+|+.+++...-.. |.. .. .+..-...+.+..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~---~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~-~~-~Cg~C~sCr~i~~ 84 (605)
T PRK05896 16 KQIIGQELIKKILVNAILN---NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKD-GD-CCNSCSVCESINT 84 (605)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCC-CC-CCcccHHHHHHHc
Confidence 6789999999999998854 23346789999999999999999987621111 110 00 0000011111111
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCCC--HHHHHHHHhHcCCC-CCCEEEEEe-CChHHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFED--MEVCKHLSKVLPRG-YGERLIITS-RNEKLTT 189 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~~--~~~~~~l~~~l~~~-~gs~IIiTT-R~~~v~~ 189 (398)
...............+.+..+..+... ...++-++|+|+++. ....+.|...+... ..+.+|++| ....+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 100000000000012233322222111 123455899999984 45556666666432 344555444 4444544
Q ss_pred HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
.+......+++.+++. ++....+.+.+...+...++ +.+..+++.++|-+..+.
T Consensus 165 TI~SRcq~ieF~~Ls~-~eL~~~L~~il~kegi~Is~---eal~~La~lS~GdlR~Al 218 (605)
T PRK05896 165 TIISRCQRYNFKKLNN-SELQELLKSIAKKEKIKIED---NAIDKIADLADGSLRDGL 218 (605)
T ss_pred HHHhhhhhcccCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHH
Confidence 4445567899999998 55666666655433322222 256678888888776443
No 211
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=6.5e-07 Score=86.93 Aligned_cols=191 Identities=10% Similarity=0.051 Sum_probs=105.4
Q ss_pred CCcccchhhHHHHHHHHhccCC------CCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGT------DDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESI 111 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~------~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~ 111 (398)
++++|.+..++.|..++..... ..-...+.++|++|+|||++|+.+++. +...... .-. ........
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~--l~c~~~~--~~~-Cg~C~~C~-- 77 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA--LQCTDPD--EPG-CGECRACR-- 77 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCCCC--CCC-CCCCHHHH--
Confidence 4689999999999999975210 013567999999999999999999765 1111000 000 00000000
Q ss_pred HHHHHHHcCCCCCCCC----CcCCCchHHHHHHHHHHHh-----CCCcEEEecCCC--CHHHHHHHHhHcC-CCCCCEEE
Q 015891 112 VKRILKRLGVDDGTTN----SFEGQGLAFLDYVLQQQLI-----GKRYLIVLDDFE--DMEVCKHLSKVLP-RGYGERLI 179 (398)
Q Consensus 112 ~~~il~~l~~~~~~~~----~~~~~~~~~~~~~l~~~l~-----~k~~LlVLDdv~--~~~~~~~l~~~l~-~~~gs~II 179 (398)
.+.. ...++.. .......++.+..+ +.+. +++.++|+|+++ +....+.|...+. ..+++.+|
T Consensus 78 --~~~~---~~hpD~~~i~~~~~~i~i~~iR~l~-~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fI 151 (394)
T PRK07940 78 --TVLA---GTHPDVRVVAPEGLSIGVDEVRELV-TIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWL 151 (394)
T ss_pred --HHhc---CCCCCEEEeccccccCCHHHHHHHH-HHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEE
Confidence 0000 0000000 00012233333222 2222 345689999999 3444455555554 23456566
Q ss_pred EEeCC-hHHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccC
Q 015891 180 ITSRN-EKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFP 250 (398)
Q Consensus 180 iTTR~-~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a 250 (398)
++|.+ ..+...+......+.+.+++. +.....+.+..+. + .+.+..+++.++|.|.....++
T Consensus 152 L~a~~~~~llpTIrSRc~~i~f~~~~~-~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 152 LCAPSPEDVLPTIRSRCRHVALRTPSV-EAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred EEECChHHChHHHHhhCeEEECCCCCH-HHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 66655 445555555678999999998 5566555543221 1 1255677888999887766554
No 212
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.64 E-value=6e-07 Score=81.09 Aligned_cols=85 Identities=14% Similarity=0.213 Sum_probs=59.3
Q ss_pred HHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCCh
Q 015891 114 RILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNE 185 (398)
Q Consensus 114 ~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~ 185 (398)
.++..+++.. ........+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+.
T Consensus 127 ~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 206 (228)
T cd03257 127 LLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL 206 (228)
T ss_pred HHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4556666632 12333458899999999999999999999999999 4444444444443 12378999999999
Q ss_pred HHHHHhcCCCceEEc
Q 015891 186 KLTTEMVGEENLHQL 200 (398)
Q Consensus 186 ~v~~~~~~~~~~~~l 200 (398)
..+..++ ++++.+
T Consensus 207 ~~~~~~~--d~i~~l 219 (228)
T cd03257 207 GVVAKIA--DRVAVM 219 (228)
T ss_pred HHHHHhc--CeEEEE
Confidence 8776543 344544
No 213
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.64 E-value=4.6e-07 Score=91.70 Aligned_cols=132 Identities=15% Similarity=0.108 Sum_probs=83.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc---------------ceEEEEe---------cCC----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV---------------PRIWVCT---------MSG---------- 104 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~---------------~~~~v~~---------v~~---------- 104 (398)
.-.+++|+|++|+|||||++.++.-..- .. .|+ ...++.. +.+
T Consensus 29 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 108 (501)
T PRK10762 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVN 108 (501)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccc
Confidence 4578999999999999999999754110 00 010 0111110 000
Q ss_pred ---ccc---HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--C
Q 015891 105 ---QKT---AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--R 172 (398)
Q Consensus 105 ---~~~---~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~ 172 (398)
..+ ......++++.+++.... ......+.+++++..+.+++..++-+++||++. |....+.+...+. .
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~ 188 (501)
T PRK10762 109 RFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELK 188 (501)
T ss_pred ccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence 000 112345677778876532 233458999999999999999999999999999 4433333333332 2
Q ss_pred CCCCEEEEEeCChHHHHHhcC
Q 015891 173 GYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~~ 193 (398)
..|..||++||+.+.+..+++
T Consensus 189 ~~~~tvii~sHd~~~~~~~~d 209 (501)
T PRK10762 189 SQGRGIVYISHRLKEIFEICD 209 (501)
T ss_pred HCCCEEEEEeCCHHHHHHhCC
Confidence 347789999999887766533
No 214
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.64 E-value=7.5e-07 Score=80.63 Aligned_cols=130 Identities=15% Similarity=0.256 Sum_probs=82.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-----Ccc--ccc---------eEEEEecCCcc--------cH---------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-----KTQ--FVP---------RIWVCTMSGQK--------TA--------- 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-----~~~--F~~---------~~~v~~v~~~~--------~~--------- 108 (398)
.-.+++|.|++|+|||||++.++.-... ... ++. ...+.++.+.. +.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 90 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLR 90 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHH
Confidence 4568999999999999999999876221 110 110 00111111110 10
Q ss_pred ---------HHHHHHHHHHcCCCC----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891 109 ---------ESIVKRILKRLGVDD----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP- 171 (398)
Q Consensus 109 ---------~~~~~~il~~l~~~~----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~- 171 (398)
.....++++.+++.. ........+.+++++..+.+.+..++-+++||++. |....+.+...+.
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~ 170 (230)
T TIGR02770 91 SLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170 (230)
T ss_pred HcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHH
Confidence 111345566666652 12233448899999999999999999999999999 4444444444443
Q ss_pred --CCCCCEEEEEeCChHHHHHh
Q 015891 172 --RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 172 --~~~gs~IIiTTR~~~v~~~~ 191 (398)
...+..||++||+.+....+
T Consensus 171 ~~~~~~~tiii~sH~~~~~~~~ 192 (230)
T TIGR02770 171 LRQLFGTGILLITHDLGVVARI 192 (230)
T ss_pred HHHhcCCEEEEEeCCHHHHHHh
Confidence 12377899999998877654
No 215
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.64 E-value=5.2e-07 Score=79.48 Aligned_cols=129 Identities=13% Similarity=0.126 Sum_probs=79.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc-------eEEEEecCCc------ccH-------------HHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP-------RIWVCTMSGQ------KTA-------------ESIV 112 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~-------~~~v~~v~~~------~~~-------------~~~~ 112 (398)
.-.+++|+|++|+|||||++.++...... . .++. ...+.++.+. .+. ....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~ 104 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETL 104 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHH
Confidence 45689999999999999999997652110 0 0100 0001111111 011 1123
Q ss_pred HHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChH
Q 015891 113 KRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEK 186 (398)
Q Consensus 113 ~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~ 186 (398)
..+++.+++... .......+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+..
T Consensus 105 ~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 105 YAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred HHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 445566666432 2223347889999999999999999999999999 4444444444442 235788999999886
Q ss_pred HHHH
Q 015891 187 LTTE 190 (398)
Q Consensus 187 v~~~ 190 (398)
....
T Consensus 185 ~i~~ 188 (195)
T PRK13541 185 SIKS 188 (195)
T ss_pred ccch
Confidence 5443
No 216
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.64 E-value=5e-07 Score=91.41 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=58.7
Q ss_pred HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
...++..+++.. ........+++++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+
T Consensus 383 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd 462 (500)
T TIGR02633 383 IGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSE 462 (500)
T ss_pred HHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 456777788753 23344458999999999999999999999999999 4443333333322 2347789999999
Q ss_pred hHHHHHhc
Q 015891 185 EKLTTEMV 192 (398)
Q Consensus 185 ~~v~~~~~ 192 (398)
......++
T Consensus 463 ~~~~~~~~ 470 (500)
T TIGR02633 463 LAEVLGLS 470 (500)
T ss_pred HHHHHHhC
Confidence 98777653
No 217
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=1.1e-06 Score=89.25 Aligned_cols=193 Identities=11% Similarity=0.041 Sum_probs=106.2
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
+++||.+..++.|..++.. ..-...+.++|+.|+||||+|+.+++...-...... .....-.....+..
T Consensus 13 ~eivGq~~i~~~L~~~i~~---~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~--------~pCg~C~~C~~i~~ 81 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDA---GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA--------TPCGVCESCVALAP 81 (584)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC--------CcccccHHHHHhhc
Confidence 6789999999999999964 223446789999999999999999876211111000 00000000011110
Q ss_pred HcCCCCC--CCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCCC-CCCEEE-EEeCChHH
Q 015891 118 RLGVDDG--TTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPRG-YGERLI-ITSRNEKL 187 (398)
Q Consensus 118 ~l~~~~~--~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~-~gs~II-iTTR~~~v 187 (398)
.-+...+ ........+.+..+...... ...+.-++|+|+++ +....+.|...+..- ..+.+| +||....+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 0000000 00000011233332221111 13456799999998 556666676666532 345555 45454556
Q ss_pred HHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891 188 TTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED 245 (398)
Q Consensus 188 ~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 245 (398)
...+......|++.+++. ++....+.+.+...+...++ +.+..|++.++|-+..
T Consensus 162 l~TI~SRc~~~~F~~l~~-~~i~~~L~~i~~~egi~i~~---~al~~Ia~~s~GdlR~ 215 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPP-RTMRALIARICEQEGVVVDD---AVYPLVIRAGGGSPRD 215 (584)
T ss_pred HHHHHHhceEEEeeCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHH
Confidence 655555678899999998 55666666655443333222 2556677888887753
No 218
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.63 E-value=6.6e-07 Score=86.28 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=83.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-cc--ccc---------------eEEEEecCCc------ccH---------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQ--FVP---------------RIWVCTMSGQ------KTA--------- 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~--F~~---------------~~~v~~v~~~------~~~--------- 108 (398)
.-.+++|+|++|+|||||++.++.-.... .. |+. ...+.++.+. .+.
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 101 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK 101 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence 34689999999999999999997642110 00 000 0001111111 011
Q ss_pred -------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCC
Q 015891 109 -------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGY 174 (398)
Q Consensus 109 -------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~ 174 (398)
.....++++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...
T Consensus 102 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~ 181 (354)
T TIGR02142 102 RARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181 (354)
T ss_pred ccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 1124566777777542 2233458999999999999999999999999999 4444444443332 223
Q ss_pred CCEEEEEeCChHHHHHhcC
Q 015891 175 GERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~~ 193 (398)
+..||++||+.+.+..+++
T Consensus 182 g~tiiivtH~~~~~~~~~d 200 (354)
T TIGR02142 182 GIPILYVSHSLQEVLRLAD 200 (354)
T ss_pred CCEEEEEecCHHHHHHhCC
Confidence 7789999999887766433
No 219
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=7e-07 Score=83.07 Aligned_cols=129 Identities=22% Similarity=0.185 Sum_probs=83.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc----------------ceEEEEecCCcc-------c--------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV----------------PRIWVCTMSGQK-------T-------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~----------------~~~~v~~v~~~~-------~-------- 107 (398)
.-.+++|+|++|+|||||++.++.-... ... |+ .+.++. +.. +
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~---q~~~~~~~~~tv~e~i~~~ 103 (275)
T PRK13639 27 KGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVF---QNPDDQLFAPTVEEDVAFG 103 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEe---eChhhhhccccHHHHHHHH
Confidence 4568999999999999999999754111 000 00 011221 110 0
Q ss_pred ----------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891 108 ----------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-- 171 (398)
Q Consensus 108 ----------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-- 171 (398)
.......+++.+++... .......+.+++++..+.+.+..++-+++||++. |......+...+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l 183 (275)
T PRK13639 104 PLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL 183 (275)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 01223456666776542 2333458999999999999999999999999999 4444444444433
Q ss_pred CCCCCEEEEEeCChHHHHHhcC
Q 015891 172 RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...|..||++||+...+..+++
T Consensus 184 ~~~~~til~vtH~~~~~~~~~d 205 (275)
T PRK13639 184 NKEGITIIISTHDVDLVPVYAD 205 (275)
T ss_pred HHCCCEEEEEecCHHHHHHhCC
Confidence 1247889999999887665433
No 220
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.63 E-value=8.8e-07 Score=81.11 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=47.9
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHh
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~ 191 (398)
..+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+.+||++||+......+
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~ 211 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYI 211 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 47899999999999999999999999999 4444444444332 23478999999998877653
No 221
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.6e-07 Score=79.62 Aligned_cols=123 Identities=17% Similarity=0.188 Sum_probs=79.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCC---------------CCccc-cceEEEEe-------------------cCCccc
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPD---------------VKTQF-VPRIWVCT-------------------MSGQKT 107 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~---------------~~~~F-~~~~~v~~-------------------v~~~~~ 107 (398)
-.++.|.|++|+|||||.+.++.=.+ ....| ....|+.. +... .
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~-~ 106 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS-G 106 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC-C
Confidence 45788999999999999999964200 01111 01111110 0000 1
Q ss_pred HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEE
Q 015891 108 AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIIT 181 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiT 181 (398)
....+.+.+..+++..-. .+-...+.+++.+..+++..-.++-|.|||++. |.+....+...+. ...|.-||.|
T Consensus 107 ~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllt 186 (209)
T COG4133 107 NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT 186 (209)
T ss_pred chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 122344555666665532 223347889999999999999999999999998 5565556665554 3568899999
Q ss_pred eCChH
Q 015891 182 SRNEK 186 (398)
Q Consensus 182 TR~~~ 186 (398)
||.+-
T Consensus 187 tHq~l 191 (209)
T COG4133 187 THQPL 191 (209)
T ss_pred cCCcc
Confidence 99773
No 222
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.63 E-value=6.6e-07 Score=82.47 Aligned_cols=130 Identities=17% Similarity=0.179 Sum_probs=81.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc--------------ceEEEEecC---Cccc--------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV--------------PRIWVCTMS---GQKT-------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~--------------~~~~v~~v~---~~~~-------------- 107 (398)
.-.+++|+|++|+|||||++.++.-... ... ++ ...++..-. ...+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 106 (258)
T PRK13548 27 PGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL 106 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC
Confidence 4568999999999999999999765211 000 00 011111000 0000
Q ss_pred ----HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHh------CCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891 108 ----AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLI------GKRYLIVLDDFE---DMEVCKHLSKVLP-- 171 (398)
Q Consensus 108 ----~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~------~k~~LlVLDdv~---~~~~~~~l~~~l~-- 171 (398)
.......+++.+++... .......+.+++++..+.+.+. .++-+++||++. |....+.+...+.
T Consensus 107 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 186 (258)
T PRK13548 107 SRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL 186 (258)
T ss_pred CcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 11234556666776542 2233458899999999999998 589999999999 4444444444433
Q ss_pred C-CCCCEEEEEeCChHHHHHh
Q 015891 172 R-GYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 172 ~-~~gs~IIiTTR~~~v~~~~ 191 (398)
. ..+..||++||+......+
T Consensus 187 ~~~~~~tiii~sH~~~~~~~~ 207 (258)
T PRK13548 187 AHERGLAVIVVLHDLNLAARY 207 (258)
T ss_pred HHhcCCEEEEEECCHHHHHHh
Confidence 1 3477899999998877654
No 223
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=2.9e-07 Score=78.09 Aligned_cols=124 Identities=21% Similarity=0.224 Sum_probs=79.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCc-ccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQ-KTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV 140 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~ 140 (398)
.-.+++|.|++|+|||||++.+... . ......+++....-. .... .....++.-. ..+.++.++..
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~~~----~~~~~i~~~~------qlS~G~~~r~~ 90 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLPLE----ELRRRIGYVP------QLSGGQRQRVA 90 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCCHH----HHHhceEEEe------eCCHHHHHHHH
Confidence 3478999999999999999999886 2 234455555411100 0111 1112222111 15788899999
Q ss_pred HHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 141 LQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 141 l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
+.+.+..++-++++|++. |......+...+. ...+..+|++||+......++ ++++.+
T Consensus 91 l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~--d~i~~l 153 (157)
T cd00267 91 LARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAA--DRVIVL 153 (157)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC--CEEEEE
Confidence 999999999999999999 4444444444332 123678999999998877642 344444
No 224
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=4.6e-07 Score=82.13 Aligned_cols=131 Identities=17% Similarity=0.194 Sum_probs=83.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-cc--cc------------ceEEEEe---cCCcccH---------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQ--FV------------PRIWVCT---MSGQKTA--------------- 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~--F~------------~~~~v~~---v~~~~~~--------------- 108 (398)
.-.+++|.|++|+|||||++.++...... .. |+ ...++.. +-...+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~ 104 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK 104 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCH
Confidence 45789999999999999999997652111 00 10 0111110 0000010
Q ss_pred ---HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 109 ---ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 109 ---~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
......+++.+++... .......+.++.++..+.+.+..++-+++||++. |....+.+...+. ...|.+|
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~ti 184 (232)
T cd03300 105 AEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITF 184 (232)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 1123455666777542 2223458899999999999999999999999999 4444444444443 2237899
Q ss_pred EEEeCChHHHHHhc
Q 015891 179 IITSRNEKLTTEMV 192 (398)
Q Consensus 179 IiTTR~~~v~~~~~ 192 (398)
|++||+......++
T Consensus 185 ii~sh~~~~~~~~~ 198 (232)
T cd03300 185 VFVTHDQEEALTMS 198 (232)
T ss_pred EEEeCCHHHHHHhc
Confidence 99999998766543
No 225
>PTZ00202 tuzin; Provisional
Probab=98.63 E-value=3.1e-07 Score=88.04 Aligned_cols=166 Identities=17% Similarity=0.222 Sum_probs=98.1
Q ss_pred CCCCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHH
Q 015891 33 KSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIV 112 (398)
Q Consensus 33 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~ 112 (398)
.+.++..|+||++++..|...|... +....+++.|.|++|+|||||++.+..... + ..++.+.. ...+++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~-d~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr---g~eElL 326 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRL-DTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR---GTEDTL 326 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhcc-CCCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC---CHHHHH
Confidence 4445688999999999999999752 333456999999999999999999997732 1 13333233 678999
Q ss_pred HHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHH-h-CCCcEEEecCCC--CH--HHHHHHHhHcCCCCCCEEEEEeCChH
Q 015891 113 KRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQL-I-GKRYLIVLDDFE--DM--EVCKHLSKVLPRGYGERLIITSRNEK 186 (398)
Q Consensus 113 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVLDdv~--~~--~~~~~l~~~l~~~~gs~IIiTTR~~~ 186 (398)
..++..||.+..... ..-...+...+.+.- . +++.+||+-=-+ +. -.-+.+. +--...-|.|++----+.
T Consensus 327 r~LL~ALGV~p~~~k---~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~ch~v~evples 402 (550)
T PTZ00202 327 RSVVKALGVPNVEAC---GDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHHcCCCCcccH---HHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchhheeeeeehHhh
Confidence 999999998543211 111222333333322 2 455666654322 22 1111211 111334677877665554
Q ss_pred HHHHh--cCCCceEEcCCCCChhHHHHHH
Q 015891 187 LTTEM--VGEENLHQLQPLSDQESCWLIY 213 (398)
Q Consensus 187 v~~~~--~~~~~~~~l~~L~~~e~~~~l~ 213 (398)
+.... ...-..|-+++++..+ +..+.
T Consensus 403 lt~~~~~lprldf~~vp~fsr~q-af~y~ 430 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQ-AFAYT 430 (550)
T ss_pred cchhcccCccceeEecCCCCHHH-HHHHH
Confidence 43322 1224568888888844 44433
No 226
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=6e-07 Score=83.09 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=82.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc--------------ceEEEEec-C--Cccc--------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV--------------PRIWVCTM-S--GQKT-------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~--------------~~~~v~~v-~--~~~~-------------- 107 (398)
.-.+++|+|++|+|||||++.++.-... .. .|+ ...++..- . ...+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 115 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHG 115 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccc
Confidence 4578999999999999999999754210 00 000 01111100 0 0000
Q ss_pred --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
.......++..+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. .
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~ 195 (265)
T PRK10575 116 ALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195 (265)
T ss_pred cccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 11234556666766432 2233458999999999999999999999999999 4444444444432 2
Q ss_pred CCCCEEEEEeCChHHHHHh
Q 015891 173 GYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~ 191 (398)
..+..||++||+......+
T Consensus 196 ~~~~tiii~sH~~~~i~~~ 214 (265)
T PRK10575 196 ERGLTVIAVLHDINMAARY 214 (265)
T ss_pred hcCCEEEEEeCCHHHHHHh
Confidence 2378899999998877654
No 227
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.63 E-value=6.1e-07 Score=83.12 Aligned_cols=131 Identities=15% Similarity=0.160 Sum_probs=82.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc-----------eEEEEecCCcc---------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP-----------RIWVCTMSGQK--------------------- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~-----------~~~v~~v~~~~--------------------- 106 (398)
.-.+++|+|++|+|||||++.+..-... ... ++. ..-+.++.+..
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 117 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN 117 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc
Confidence 4568999999999999999999754210 000 000 00011111110
Q ss_pred ------cHHHHHHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 107 ------TAESIVKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 107 ------~~~~~~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
.......++++.+++.. ........+.++.++..+.+.+..++-+++||++. |....+.+...+. .
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 197 (267)
T PRK15112 118 TDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQE 197 (267)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 00122345677777742 12223458899999999999999999999999999 4444444444443 1
Q ss_pred CCCCEEEEEeCChHHHHHhc
Q 015891 173 GYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~ 192 (398)
..|..||++||+.+....++
T Consensus 198 ~~g~tviivsH~~~~~~~~~ 217 (267)
T PRK15112 198 KQGISYIYVTQHLGMMKHIS 217 (267)
T ss_pred HcCcEEEEEeCCHHHHHHhc
Confidence 23778999999988777643
No 228
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.63 E-value=6.4e-07 Score=77.99 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=73.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE------------------ecCCcc-----cH-HHHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC------------------TMSGQK-----TA-ESIVKRILK 117 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~------------------~v~~~~-----~~-~~~~~~il~ 117 (398)
.-.+++|.|++|+|||||++.+..-.. ...+.+++. ++.+.. .. ......+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~ 101 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL 101 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHH
Confidence 456899999999999999999987521 112222222 111110 00 011111110
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHh
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~ 191 (398)
.. ..+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+......+
T Consensus 102 ~~----------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 170 (182)
T cd03215 102 SS----------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGL 170 (182)
T ss_pred Hh----------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 00 05778889999999999999999999998 4444444444443 22478999999998766654
No 229
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=8.1e-07 Score=90.57 Aligned_cols=200 Identities=13% Similarity=0.123 Sum_probs=111.9
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc-eEEEEecCCcccHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP-RIWVCTMSGQKTAESIVKRIL 116 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~~v~~v~~~~~~~~~~~~il 116 (398)
++++|.+..++.|...+.. ..-...+.++|+.|+||||+|+.+++...-...... ..-+. ....-.....+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~---gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i~ 96 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFET---GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAIM 96 (598)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHHh
Confidence 6789999999999999964 223557899999999999999999886211111100 00000 000000111121
Q ss_pred HHcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEe-CChHHH
Q 015891 117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITS-RNEKLT 188 (398)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTT-R~~~v~ 188 (398)
.....+.......+..+.+..+..+... +..++-++|+|+++ +....+.|...+.. ..++++|++| ....+.
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 1111100000000112344433332221 12356789999998 44556666666642 3456665555 444555
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
..+......+++.+++. ++....+.+.+...+....+ +.+..|++.++|-+..+..
T Consensus 177 ~tI~SRcq~~~f~~l~~-~el~~~L~~i~~kegi~i~~---eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEA-DVLAAHLSRIAAKEGVEVED---EALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHHhheeEEEecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 55545567899999998 66777777655444433333 3667788888888866543
No 230
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.62 E-value=4.7e-07 Score=83.57 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=80.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccce-EEEE-e--cCCc---------------ccHH---HHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVPR-IWVC-T--MSGQ---------------KTAE---SIVKRIL 116 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~-~~v~-~--v~~~---------------~~~~---~~~~~il 116 (398)
.-.+++|.|++|+|||||++.++....... .++.. .++. . +... .... .....++
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l 128 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKII 128 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456899999999999999999987621110 01110 1110 0 0000 0111 1122344
Q ss_pred HHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHH
Q 015891 117 KRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 117 ~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~ 190 (398)
+.+++.... ......+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+...+..
T Consensus 129 ~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~ 208 (264)
T PRK13546 129 EFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQ 208 (264)
T ss_pred HHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 555554321 223347899999999999999999999999999 4433333333332 2347899999999887766
Q ss_pred hcC
Q 015891 191 MVG 193 (398)
Q Consensus 191 ~~~ 193 (398)
+++
T Consensus 209 ~~d 211 (264)
T PRK13546 209 FCT 211 (264)
T ss_pred HcC
Confidence 533
No 231
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=5.6e-07 Score=91.18 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
...++..+++.. ........+++++++..+.+.+..++-++|||++. |....+.+...+. ...|..||++||+
T Consensus 385 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd 464 (506)
T PRK13549 385 ILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSE 464 (506)
T ss_pred HHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 456677777742 23334568999999999999999999999999999 4433333333332 1347889999999
Q ss_pred hHHHHHhcC
Q 015891 185 EKLTTEMVG 193 (398)
Q Consensus 185 ~~v~~~~~~ 193 (398)
.+.+..+++
T Consensus 465 ~~~~~~~~d 473 (506)
T PRK13549 465 LPEVLGLSD 473 (506)
T ss_pred HHHHHHhCC
Confidence 887776533
No 232
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.62 E-value=6e-07 Score=91.06 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=58.9
Q ss_pred HHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891 112 VKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNE 185 (398)
Q Consensus 112 ~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~ 185 (398)
..++++.+++.... ......+++++++..+.+.+..++-+++||++. |......+...+. ...|..||++||+.
T Consensus 126 ~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~ 205 (510)
T PRK09700 126 AAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL 205 (510)
T ss_pred HHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45567777776432 223458999999999999999999999999999 4444444433332 23478899999998
Q ss_pred HHHHHhcC
Q 015891 186 KLTTEMVG 193 (398)
Q Consensus 186 ~v~~~~~~ 193 (398)
+.+..+++
T Consensus 206 ~~~~~~~d 213 (510)
T PRK09700 206 AEIRRICD 213 (510)
T ss_pred HHHHHhCC
Confidence 87776543
No 233
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=2.2e-07 Score=85.48 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=57.4
Q ss_pred HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891 112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNE 185 (398)
Q Consensus 112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~ 185 (398)
...++..+++... .......+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+.
T Consensus 119 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~ 198 (255)
T PRK11231 119 VNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL 198 (255)
T ss_pred HHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3455666666432 2223448899999999999999999999999999 4444444444443 22478899999998
Q ss_pred HHHHHhcC
Q 015891 186 KLTTEMVG 193 (398)
Q Consensus 186 ~v~~~~~~ 193 (398)
.....+++
T Consensus 199 ~~~~~~~d 206 (255)
T PRK11231 199 NQASRYCD 206 (255)
T ss_pred HHHHHhcC
Confidence 87665433
No 234
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.61 E-value=6.6e-07 Score=90.76 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=62.0
Q ss_pred HHHHHHHcCCC-C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVD-D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~-~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
..+++..+++. . ........+++++++..+++.+..++-++|||++. |....+.+...+. ...|..||++||+
T Consensus 389 ~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd 468 (510)
T PRK09700 389 AENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSE 468 (510)
T ss_pred HHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 45677778875 3 23344558999999999999999999999999999 4444444444432 2347889999999
Q ss_pred hHHHHHhcCCCceEEc
Q 015891 185 EKLTTEMVGEENLHQL 200 (398)
Q Consensus 185 ~~v~~~~~~~~~~~~l 200 (398)
...+..++ ++++.+
T Consensus 469 ~~~~~~~~--d~i~~l 482 (510)
T PRK09700 469 LPEIITVC--DRIAVF 482 (510)
T ss_pred HHHHHhhC--CEEEEE
Confidence 88776653 344444
No 235
>PRK05642 DNA replication initiation factor; Validated
Probab=98.61 E-value=1.1e-06 Score=79.63 Aligned_cols=148 Identities=19% Similarity=0.225 Sum_probs=84.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQ 142 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 142 (398)
...+.|+|+.|+|||.|++++++. ....-..++|++ .. ++... . ..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~-~~------~~~~~-------------------~----~~~~ 92 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLP-LA------ELLDR-------------------G----PELL 92 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEee-HH------HHHhh-------------------h----HHHH
Confidence 467899999999999999999875 222223355665 21 11110 0 1122
Q ss_pred HHHhCCCcEEEecCCC----CHHHHHHHHhHcC--CCCCCEEEEEeCChH---------HHHHhcCCCceEEcCCCCChh
Q 015891 143 QQLIGKRYLIVLDDFE----DMEVCKHLSKVLP--RGYGERLIITSRNEK---------LTTEMVGEENLHQLQPLSDQE 207 (398)
Q Consensus 143 ~~l~~k~~LlVLDdv~----~~~~~~~l~~~l~--~~~gs~IIiTTR~~~---------v~~~~~~~~~~~~l~~L~~~e 207 (398)
+.+.+ --+||+||+. ...+.+.+...+. ...|..+|+|++... +.+.+ ....++++++++. +
T Consensus 93 ~~~~~-~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl-~~gl~~~l~~~~~-e 169 (234)
T PRK05642 93 DNLEQ-YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRL-TLALVFQMRGLSD-E 169 (234)
T ss_pred Hhhhh-CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHH-hcCeeeecCCCCH-H
Confidence 22222 2478999997 2344455555554 335678899887532 12222 2346789999998 6
Q ss_pred HHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 208 SCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
+...++++.+.......++ +...-|++++.|-...+..
T Consensus 170 ~~~~il~~ka~~~~~~l~~---ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 170 DKLRALQLRASRRGLHLTD---EVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 6776666322222233332 3566677777666655443
No 236
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=1.3e-06 Score=81.13 Aligned_cols=71 Identities=8% Similarity=0.077 Sum_probs=52.0
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
...+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+...+..++ ++++.+.
T Consensus 153 ~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~--d~i~~l~ 227 (269)
T PRK14259 153 YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVS--DMTAFFN 227 (269)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc--CEEEEEe
Confidence 347889999999999999999999999999 4444444444443 123578999999988776653 4555554
No 237
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.61 E-value=6.2e-07 Score=91.20 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=61.1
Q ss_pred HHHHHHcCCCC------CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEE
Q 015891 113 KRILKRLGVDD------GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLII 180 (398)
Q Consensus 113 ~~il~~l~~~~------~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIi 180 (398)
..++..+++.. ........+++++++..+.+.+..++-+||||++. |....+.+...+. ...|..||+
T Consensus 404 ~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~ 483 (520)
T TIGR03269 404 VITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFII 483 (520)
T ss_pred HHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 45667777753 12334458999999999999999999999999999 4444444444443 223788999
Q ss_pred EeCChHHHHHhcCCCceEEc
Q 015891 181 TSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 181 TTR~~~v~~~~~~~~~~~~l 200 (398)
+||+.+.+..++ ++++.+
T Consensus 484 vsHd~~~~~~~~--d~i~~l 501 (520)
T TIGR03269 484 VSHDMDFVLDVC--DRAALM 501 (520)
T ss_pred EeCCHHHHHHhC--CEEEEE
Confidence 999998877653 344444
No 238
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.61 E-value=8.1e-07 Score=90.98 Aligned_cols=136 Identities=17% Similarity=0.205 Sum_probs=87.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccceEEEEecCCcc-------cH----------------HHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPRIWVCTMSGQK-------TA----------------ESIVKRI 115 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~~~v~~v~~~~-------~~----------------~~~~~~i 115 (398)
.-.+++|+|++|+|||||++.++....- .. .|....-+.++.+.. +. ......+
T Consensus 349 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 428 (556)
T PRK11819 349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAY 428 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHH
Confidence 4568999999999999999999865211 11 111110111122110 11 1122356
Q ss_pred HHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891 116 LKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 116 l~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~ 190 (398)
+..+++... .......+++++++..+.+.+..++-+++||++. |....+.+...+..-.+ .||++||+...+..
T Consensus 429 l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-tvi~vtHd~~~~~~ 507 (556)
T PRK11819 429 VGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPG-CAVVISHDRWFLDR 507 (556)
T ss_pred HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCC-eEEEEECCHHHHHH
Confidence 777777532 3334458999999999999999999999999999 45555555555542234 69999999988776
Q ss_pred hcCCCceEEc
Q 015891 191 MVGEENLHQL 200 (398)
Q Consensus 191 ~~~~~~~~~l 200 (398)
++ ++++.+
T Consensus 508 ~~--d~i~~l 515 (556)
T PRK11819 508 IA--THILAF 515 (556)
T ss_pred hC--CEEEEE
Confidence 53 344555
No 239
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.61 E-value=5e-07 Score=86.87 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=84.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc---------------eEEEEecCCc------cc----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP---------------RIWVCTMSGQ------KT---------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~---------------~~~v~~v~~~------~~---------- 107 (398)
.-.+++|.|++|+|||||.+.+..-..... .|+. .-.+.++.+. .+
T Consensus 18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~ 97 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPE 97 (363)
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 457899999999999999999975421000 0000 0001111110 01
Q ss_pred --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
..+...++++.+++... ...+...+++++++..+.+.|..++-++++|++. |....+.+...+. .
T Consensus 98 ~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~ 177 (363)
T TIGR01186 98 LLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA 177 (363)
T ss_pred HcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 12234566777777542 2334458999999999999999999999999999 4443334433332 2
Q ss_pred CCCCEEEEEeCChHHHHHhcC
Q 015891 173 GYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~~ 193 (398)
..+.+||++||+.+.+..+++
T Consensus 178 ~~~~Tii~vTHd~~ea~~~~d 198 (363)
T TIGR01186 178 TLQKTIVFITHDLDEAIRIGD 198 (363)
T ss_pred hcCCEEEEEeCCHHHHHHhCC
Confidence 347889999999987766543
No 240
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=6e-07 Score=91.47 Aligned_cols=136 Identities=19% Similarity=0.241 Sum_probs=87.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccceEEEEecCCc--------ccH-------------HHHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPRIWVCTMSGQ--------KTA-------------ESIVKRILK 117 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~~~v~~v~~~--------~~~-------------~~~~~~il~ 117 (398)
.-.+++|+|++|+|||||++.++.-..- .. .|....-+.++.+. ... ......++.
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~ 423 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLG 423 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHH
Confidence 4568999999999999999999865211 11 12211111111111 011 123445667
Q ss_pred HcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhc
Q 015891 118 RLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 118 ~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~ 192 (398)
.+++.. ........+++++++..+.+.+..++-+++||++. |....+.+...+..- +..||++||+...+..++
T Consensus 424 ~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~tvi~vsHd~~~~~~~~ 502 (530)
T PRK15064 424 RLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-EGTLIFVSHDREFVSSLA 502 (530)
T ss_pred HcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhC
Confidence 777632 23334558999999999999999999999999999 445555555555422 348999999998887754
Q ss_pred CCCceEEc
Q 015891 193 GEENLHQL 200 (398)
Q Consensus 193 ~~~~~~~l 200 (398)
++++.+
T Consensus 503 --d~i~~l 508 (530)
T PRK15064 503 --TRIIEI 508 (530)
T ss_pred --CEEEEE
Confidence 344444
No 241
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.61 E-value=6.3e-07 Score=80.35 Aligned_cols=153 Identities=20% Similarity=0.317 Sum_probs=86.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCcccc--ceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFV--PRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDY 139 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~ 139 (398)
....+.|+|+.|+|||.|++++++. ...... .+++++ ...+...+...+.-. . ..
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~-------~~~f~~~~~~~~~~~----------~----~~ 89 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS-------AEEFIREFADALRDG----------E----IE 89 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE-------HHHHHHHHHHHHHTT----------S----HH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec-------HHHHHHHHHHHHHcc----------c----ch
Confidence 4556889999999999999999887 433222 244544 334444444443211 1 12
Q ss_pred HHHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeCCh---------HHHHHhcCCCceEEcCCCC
Q 015891 140 VLQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSRNE---------KLTTEMVGEENLHQLQPLS 204 (398)
Q Consensus 140 ~l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR~~---------~v~~~~~~~~~~~~l~~L~ 204 (398)
.+...+. .--+|++||++.. .+.+.+...+. ...|.++|+|++.. ++.+.+ .....+++++++
T Consensus 90 ~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl-~~Gl~~~l~~pd 167 (219)
T PF00308_consen 90 EFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRL-SWGLVVELQPPD 167 (219)
T ss_dssp HHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHH-HCSEEEEE----
T ss_pred hhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhH-hhcchhhcCCCC
Confidence 2333343 5679999999832 34455555554 34577999999643 344444 346689999998
Q ss_pred ChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891 205 DQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN 243 (398)
Q Consensus 205 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 243 (398)
. +....++.+.+...+...+++ +..-|++.+.+..
T Consensus 168 ~-~~r~~il~~~a~~~~~~l~~~---v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 168 D-EDRRRILQKKAKERGIELPEE---VIEYLARRFRRDV 202 (219)
T ss_dssp H-HHHHHHHHHHHHHTT--S-HH---HHHHHHHHTTSSH
T ss_pred H-HHHHHHHHHHHHHhCCCCcHH---HHHHHHHhhcCCH
Confidence 8 667777776554444433332 4444555554433
No 242
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.60 E-value=8.8e-07 Score=90.68 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=49.9
Q ss_pred CcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891 128 SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 128 ~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
....+++++++..+.+.+..++-+++||++. |....+.+...+... +..||++||+.+....+++
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~-~~tvIiisHd~~~~~~~~d 226 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY-PGTVVAVTHDRYFLDNVAG 226 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCHHHHHhhcC
Confidence 3458999999999999999999999999999 445444555555422 2489999999988776543
No 243
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=7.2e-07 Score=90.35 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=84.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC---Ccc--ccc---------------eEEEEe---cCCc-------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV---KTQ--FVP---------------RIWVCT---MSGQ------------- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~---~~~--F~~---------------~~~v~~---v~~~------------- 105 (398)
.-.+++|+|++|+|||||++.++.-... ... |+. ..++.. +...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 109 (506)
T PRK13549 30 AGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEI 109 (506)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccc
Confidence 4568999999999999999999775221 110 110 111110 0000
Q ss_pred -----cc---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891 106 -----KT---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-- 171 (398)
Q Consensus 106 -----~~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-- 171 (398)
.. ......+++..+++... .......+.+++++..+.+.+..++-+++||++. |......+...+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 189 (506)
T PRK13549 110 TPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL 189 (506)
T ss_pred cccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 00 11234567777777543 2233458999999999999999999999999999 4433333333332
Q ss_pred CCCCCEEEEEeCChHHHHHhcC
Q 015891 172 RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...|..||++||+...+..+++
T Consensus 190 ~~~~~tvi~~tH~~~~~~~~~d 211 (506)
T PRK13549 190 KAHGIACIYISHKLNEVKAISD 211 (506)
T ss_pred HHCCCEEEEEeCcHHHHHHhcC
Confidence 2347789999999887766533
No 244
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.60 E-value=9.2e-07 Score=81.71 Aligned_cols=81 Identities=15% Similarity=0.143 Sum_probs=58.1
Q ss_pred HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~ 184 (398)
..++++.+++... .......+.+++++..+.+.+..++-+|+||++. |....+.+...+. ...|..||++||+
T Consensus 133 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~ 212 (262)
T PRK09984 133 ALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212 (262)
T ss_pred HHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4556666776532 2233448899999999999999999999999999 4454445544443 1237899999999
Q ss_pred hHHHHHhc
Q 015891 185 EKLTTEMV 192 (398)
Q Consensus 185 ~~v~~~~~ 192 (398)
...+..++
T Consensus 213 ~~~~~~~~ 220 (262)
T PRK09984 213 VDYALRYC 220 (262)
T ss_pred HHHHHHhC
Confidence 98766543
No 245
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=5.9e-07 Score=83.52 Aligned_cols=129 Identities=17% Similarity=0.153 Sum_probs=80.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc------------eEEEEecCCcc-------c------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP------------RIWVCTMSGQK-------T------------ 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~------------~~~v~~v~~~~-------~------------ 107 (398)
.-.+++|.|++|+|||||++.++.-.... . .|+. ...+.++.+.. +
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 106 (274)
T PRK13644 27 KGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL 106 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc
Confidence 45689999999999999999997642110 0 0000 00011011100 0
Q ss_pred ------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCC
Q 015891 108 ------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYG 175 (398)
Q Consensus 108 ------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~g 175 (398)
.......+++.+++... .......+.+++++..+.+.+..++-+++||++. |......+...+. ...|
T Consensus 107 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g 186 (274)
T PRK13644 107 CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKG 186 (274)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC
Confidence 11223455666676542 2223448899999999999999999999999999 4433333333332 2347
Q ss_pred CEEEEEeCChHHHHH
Q 015891 176 ERLIITSRNEKLTTE 190 (398)
Q Consensus 176 s~IIiTTR~~~v~~~ 190 (398)
.+||++||+.+.+..
T Consensus 187 ~til~~tH~~~~~~~ 201 (274)
T PRK13644 187 KTIVYITHNLEELHD 201 (274)
T ss_pred CEEEEEecCHHHHhh
Confidence 899999999887743
No 246
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.60 E-value=7.4e-07 Score=90.16 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCC-C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891 111 IVKRILKRLGVD-D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR 183 (398)
Q Consensus 111 ~~~~il~~l~~~-~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR 183 (398)
....++..+++. . ........+++++++..+.+.+..++-+|+||++. |....+.+...+. ...|..||++||
T Consensus 375 ~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsH 454 (501)
T PRK11288 375 NADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSS 454 (501)
T ss_pred HHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECC
Confidence 345677778873 2 23334558999999999999999999999999999 4444444443332 234778999999
Q ss_pred ChHHHHHhc
Q 015891 184 NEKLTTEMV 192 (398)
Q Consensus 184 ~~~v~~~~~ 192 (398)
+.+....++
T Consensus 455 d~~~~~~~~ 463 (501)
T PRK11288 455 DLPEVLGVA 463 (501)
T ss_pred CHHHHHhhC
Confidence 998877653
No 247
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.60 E-value=5e-07 Score=79.83 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=77.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc-------------ceEEEEe---cCCcccH--------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV-------------PRIWVCT---MSGQKTA-------------- 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~-------------~~~~v~~---v~~~~~~-------------- 108 (398)
.-.+++|+|++|+|||||++.+...... ... |+ ...++.. .....+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGA 104 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCc
Confidence 4678999999999999999999765210 000 00 0111110 0000011
Q ss_pred HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEe
Q 015891 109 ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITS 182 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTT 182 (398)
......+++.+++... .......+.++.++..+.+.+..++-+++||++. |....+.+...+. ...|..||++|
T Consensus 105 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s 184 (198)
T TIGR01189 105 QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTT 184 (198)
T ss_pred HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 1123455666666542 2223347889999999999999999999999999 4444444444442 23467899999
Q ss_pred CCh
Q 015891 183 RNE 185 (398)
Q Consensus 183 R~~ 185 (398)
|+.
T Consensus 185 H~~ 187 (198)
T TIGR01189 185 HQD 187 (198)
T ss_pred ccc
Confidence 977
No 248
>PRK13409 putative ATPase RIL; Provisional
Probab=98.60 E-value=4.3e-07 Score=93.13 Aligned_cols=131 Identities=13% Similarity=0.204 Sum_probs=84.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCC-CCcc-------------ccc----------------eEE-EEecCCcc----
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPD-VKTQ-------------FVP----------------RIW-VCTMSGQK---- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~-~~~~-------------F~~----------------~~~-v~~v~~~~---- 106 (398)
.-.+++|+|++|+|||||++.+..... .... |.. ..+ ..++....
T Consensus 98 ~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~ 177 (590)
T PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFK 177 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhc
Confidence 456999999999999999999976511 0111 111 000 00011100
Q ss_pred -cH---------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891 107 -TA---------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP- 171 (398)
Q Consensus 107 -~~---------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~- 171 (398)
+. .....++++.+++... .......++++.++..+.+.+..++-+++||++. |......+...+.
T Consensus 178 ~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~ 257 (590)
T PRK13409 178 GKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRE 257 (590)
T ss_pred chHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 11 1234567777777643 2233458999999999999999999999999998 4444444443333
Q ss_pred -CCCCCEEEEEeCChHHHHHhcC
Q 015891 172 -RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 172 -~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
.. +..||++||+...+..+++
T Consensus 258 l~~-g~tvIivsHd~~~l~~~~D 279 (590)
T PRK13409 258 LAE-GKYVLVVEHDLAVLDYLAD 279 (590)
T ss_pred HHC-CCEEEEEeCCHHHHHHhCC
Confidence 23 7889999999988876543
No 249
>PLN03073 ABC transporter F family; Provisional
Probab=98.60 E-value=6.7e-07 Score=93.51 Aligned_cols=136 Identities=18% Similarity=0.233 Sum_probs=87.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccceEEEEecCCcc--------c------------HHHHHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVPRIWVCTMSGQK--------T------------AESIVKRILKR 118 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~~~~v~~v~~~~--------~------------~~~~~~~il~~ 118 (398)
.-.+++|+|++|+|||||++.+...... ... +....-+.++.+.. . .......++..
T Consensus 534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~ 613 (718)
T PLN03073 534 LDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS 613 (718)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4458999999999999999999875211 110 11101111111110 0 11234566777
Q ss_pred cCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891 119 LGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 119 l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
+++.. ........+++++++..+.+.+..++-+||||++. |....+.+...+.... ..||++||+...+..++
T Consensus 614 ~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~-gtvIivSHd~~~i~~~~- 691 (718)
T PLN03073 614 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQ-GGVLMVSHDEHLISGSV- 691 (718)
T ss_pred CCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcC-CEEEEEECCHHHHHHhC-
Confidence 77753 23334458999999999999999999999999999 4444455554443223 48999999998887753
Q ss_pred CCceEEc
Q 015891 194 EENLHQL 200 (398)
Q Consensus 194 ~~~~~~l 200 (398)
++++.+
T Consensus 692 -drv~~l 697 (718)
T PLN03073 692 -DELWVV 697 (718)
T ss_pred -CEEEEE
Confidence 344444
No 250
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.60 E-value=8.1e-07 Score=89.66 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=83.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc---------------ceEEEEe---------cCC----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV---------------PRIWVCT---------MSG---------- 104 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~---------------~~~~v~~---------v~~---------- 104 (398)
.-.+++|+|++|+|||||++.++.-... .. .|+ ...++.. +..
T Consensus 23 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 102 (491)
T PRK10982 23 PHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTK 102 (491)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccc
Confidence 4568999999999999999999654210 00 000 0112110 000
Q ss_pred c--cc---HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891 105 Q--KT---AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG 173 (398)
Q Consensus 105 ~--~~---~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~ 173 (398)
. .+ .......++..+++.... ......+++++++..+.+.+..++-++|||++. |....+.+...+. ..
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 182 (491)
T PRK10982 103 GMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE 182 (491)
T ss_pred ccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 0 00 112345667777775432 223448999999999999999999999999999 4444444433332 23
Q ss_pred CCCEEEEEeCChHHHHHhcC
Q 015891 174 YGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~~~~ 193 (398)
.|..||++||+...+..+++
T Consensus 183 ~g~tvii~tH~~~~~~~~~d 202 (491)
T PRK10982 183 RGCGIVYISHKMEEIFQLCD 202 (491)
T ss_pred CCCEEEEEecCHHHHHHhCC
Confidence 47789999999887766533
No 251
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.60 E-value=6.4e-07 Score=85.41 Aligned_cols=82 Identities=15% Similarity=0.261 Sum_probs=57.2
Q ss_pred HHHHHHcCCCCC----CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEe
Q 015891 113 KRILKRLGVDDG----TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITS 182 (398)
Q Consensus 113 ~~il~~l~~~~~----~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTT 182 (398)
.++++.+++... ...+...++++.++..+.+.+..++-|||+|++. |......+...+. ...|..||++|
T Consensus 140 ~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iT 219 (330)
T PRK09473 140 VRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMIT 219 (330)
T ss_pred HHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 445666666531 1234458999999999999999999999999999 3333333333322 23478999999
Q ss_pred CChHHHHHhcCC
Q 015891 183 RNEKLTTEMVGE 194 (398)
Q Consensus 183 R~~~v~~~~~~~ 194 (398)
|+..++..+++.
T Consensus 220 Hdl~~~~~~~Dr 231 (330)
T PRK09473 220 HDLGVVAGICDK 231 (330)
T ss_pred CCHHHHHHhCCE
Confidence 999888765443
No 252
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.60 E-value=5.9e-07 Score=80.69 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=49.5
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+.+... ++ ++++.+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~-~~--d~v~~l 211 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD-LV--DRIIVM 211 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hC--CEEEEE
Confidence 57899999999999999999999999998 4444444444443 122378999999998763 32 444544
No 253
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=8.9e-07 Score=83.02 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=55.4
Q ss_pred HHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCCh
Q 015891 114 RILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNE 185 (398)
Q Consensus 114 ~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~ 185 (398)
.++..+++.. ........+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+.
T Consensus 132 ~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~ 211 (289)
T PRK13645 132 ELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM 211 (289)
T ss_pred HHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 4556666632 22333458899999999999999999999999999 4444444444332 22378899999998
Q ss_pred HHHHHhc
Q 015891 186 KLTTEMV 192 (398)
Q Consensus 186 ~v~~~~~ 192 (398)
..+..++
T Consensus 212 ~~~~~~~ 218 (289)
T PRK13645 212 DQVLRIA 218 (289)
T ss_pred HHHHHhC
Confidence 8766543
No 254
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.59 E-value=7.2e-07 Score=85.04 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=57.6
Q ss_pred HHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891 113 KRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN 184 (398)
Q Consensus 113 ~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~ 184 (398)
.++++.+++.. ........++++.++..+.+.+..++-+||+|++. |......+...+. ...+..||++||+
T Consensus 142 ~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd 221 (331)
T PRK15079 142 KAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD 221 (331)
T ss_pred HHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45566677742 23334558999999999999999999999999999 3333323333332 2247899999999
Q ss_pred hHHHHHhcC
Q 015891 185 EKLTTEMVG 193 (398)
Q Consensus 185 ~~v~~~~~~ 193 (398)
...+..+++
T Consensus 222 l~~~~~~~d 230 (331)
T PRK15079 222 LAVVKHISD 230 (331)
T ss_pred HHHHHHhCC
Confidence 998877544
No 255
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.59 E-value=7.4e-07 Score=90.21 Aligned_cols=132 Identities=15% Similarity=0.133 Sum_probs=84.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC---Ccc--ccc---------------eEEEEecC---Cc-------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV---KTQ--FVP---------------RIWVCTMS---GQ------------- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~---~~~--F~~---------------~~~v~~v~---~~------------- 105 (398)
.-.+++|+|++|+|||||++.++.-... ... |+. ..++..-. ..
T Consensus 26 ~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 105 (500)
T TIGR02633 26 PGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEI 105 (500)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccc
Confidence 4568999999999999999999875211 110 110 11111000 00
Q ss_pred ------c---cHHHHHHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC
Q 015891 106 ------K---TAESIVKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP 171 (398)
Q Consensus 106 ------~---~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~ 171 (398)
. ........+++.+++... .......+++++++..+++.+..++-+++||++. |....+.+...+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 185 (500)
T TIGR02633 106 TLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIR 185 (500)
T ss_pred cccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 0 011234566777777543 2223458999999999999999999999999999 4444444444332
Q ss_pred --CCCCCEEEEEeCChHHHHHhcC
Q 015891 172 --RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 172 --~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...|..||++||+.+.+..+++
T Consensus 186 ~l~~~g~tviiitHd~~~~~~~~d 209 (500)
T TIGR02633 186 DLKAHGVACVYISHKLNEVKAVCD 209 (500)
T ss_pred HHHhCCCEEEEEeCcHHHHHHhCC
Confidence 2347889999999887766533
No 256
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.59 E-value=7.6e-07 Score=80.58 Aligned_cols=131 Identities=18% Similarity=0.225 Sum_probs=79.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc------------eEEEEecCCc------ccH------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP------------RIWVCTMSGQ------KTA------------ 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~------------~~~v~~v~~~------~~~------------ 108 (398)
.-.+++|+|++|+|||||++.+..-... .. .|+. ...+.++.+. .+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP 104 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC
Confidence 4678999999999999999999754210 00 0000 0011111111 011
Q ss_pred ---HHHHHHHHHHcC-CCC-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCE
Q 015891 109 ---ESIVKRILKRLG-VDD-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGER 177 (398)
Q Consensus 109 ---~~~~~~il~~l~-~~~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~ 177 (398)
......++..++ +.. ........+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..
T Consensus 105 ~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 184 (230)
T TIGR03410 105 RRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA 184 (230)
T ss_pred cchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcE
Confidence 112233444443 221 12223347899999999999999999999999998 4444444444443 223789
Q ss_pred EEEEeCChHHHHHhc
Q 015891 178 LIITSRNEKLTTEMV 192 (398)
Q Consensus 178 IIiTTR~~~v~~~~~ 192 (398)
||++||+.+.+..++
T Consensus 185 ii~~sH~~~~~~~~~ 199 (230)
T TIGR03410 185 ILLVEQYLDFARELA 199 (230)
T ss_pred EEEEeCCHHHHHHhC
Confidence 999999998776643
No 257
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=5.2e-07 Score=91.12 Aligned_cols=196 Identities=15% Similarity=0.143 Sum_probs=104.6
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
++++|-+..++.|..++.. ..-...+.++|+.|+||||+|+.+++...-..... ......-.....+..
T Consensus 16 ~divGq~~v~~~L~~~i~~---~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~--------~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQ---QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT--------ATPCGVCSACLEIDS 84 (527)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------CCCCCCCHHHHHHhc
Confidence 5789999999999999864 22345678999999999999999977621111000 000000000000000
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHH----hCCCcEEEecCCCC--HHHHHHHHhHcCCC-CCCEEEEEeCC-hHHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL----IGKRYLIVLDDFED--MEVCKHLSKVLPRG-YGERLIITSRN-EKLTT 189 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVLDdv~~--~~~~~~l~~~l~~~-~gs~IIiTTR~-~~v~~ 189 (398)
.-...............+..+..+.... .+++.++|+|+++. ....+.|...+..- ..+.+|++|.+ ..+..
T Consensus 85 ~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~ 164 (527)
T PRK14969 85 GRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPV 164 (527)
T ss_pred CCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCch
Confidence 0000000000000122333332222211 24567999999993 45556666666432 35556655544 33332
Q ss_pred HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
.+......+++.+++. ++....+.+.+...+...+ ...+..|++.++|.+..+..
T Consensus 165 tI~SRc~~~~f~~l~~-~~i~~~L~~il~~egi~~~---~~al~~la~~s~Gslr~al~ 219 (527)
T PRK14969 165 TVLSRCLQFNLKQMPP-PLIVSHLQHILEQENIPFD---ATALQLLARAAAGSMRDALS 219 (527)
T ss_pred hHHHHHHHHhcCCCCH-HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 3333356889999998 5566666665543332222 23567788889998875544
No 258
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.59 E-value=6.5e-07 Score=81.44 Aligned_cols=132 Identities=16% Similarity=0.133 Sum_probs=82.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc--------c-eEEEEecCCc------cc----------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV--------P-RIWVCTMSGQ------KT---------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~--------~-~~~v~~v~~~------~~---------------- 107 (398)
.-.+++|.|++|+|||||++.+...... ... |+ . .-.+.++.+. .+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~ 104 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPK 104 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCH
Confidence 4568999999999999999999764111 000 10 0 0011111111 00
Q ss_pred --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
......+++..+++... .......+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..|
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tv 184 (237)
T TIGR00968 105 AKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTT 184 (237)
T ss_pred HHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 01223455666666431 1222347899999999999999999999999999 4444444444443 2237899
Q ss_pred EEEeCChHHHHHhcC
Q 015891 179 IITSRNEKLTTEMVG 193 (398)
Q Consensus 179 IiTTR~~~v~~~~~~ 193 (398)
|++||+...+..+++
T Consensus 185 li~sH~~~~~~~~~d 199 (237)
T TIGR00968 185 VFVTHDQEEAMEVAD 199 (237)
T ss_pred EEEeCCHHHHHhhcC
Confidence 999999987666533
No 259
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.59 E-value=8.9e-07 Score=81.95 Aligned_cols=132 Identities=15% Similarity=0.124 Sum_probs=82.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccce-----------EEEEecCCc------cc--------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVPR-----------IWVCTMSGQ------KT-------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~~-----------~~v~~v~~~------~~-------------- 107 (398)
.-.+++|+|++|+|||||++.++...... . .|+.. ..+.++.+. .+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~ 111 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQP 111 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccc
Confidence 45689999999999999999997652110 0 01100 000001110 00
Q ss_pred --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
.......+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. .
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~ 191 (265)
T PRK10253 112 LFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR 191 (265)
T ss_pred cccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 11233456666666532 2233448899999999999999999999999998 4444444444442 2
Q ss_pred CCCCEEEEEeCChHHHHHhcC
Q 015891 173 GYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~~ 193 (398)
..+..||++||+...+..+++
T Consensus 192 ~~~~tiii~tH~~~~~~~~~d 212 (265)
T PRK10253 192 EKGYTLAAVLHDLNQACRYAS 212 (265)
T ss_pred hcCCEEEEEeCCHHHHHHhCC
Confidence 237789999999987666533
No 260
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.58 E-value=6.1e-06 Score=76.03 Aligned_cols=202 Identities=15% Similarity=0.153 Sum_probs=124.2
Q ss_pred CCCcccch---hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc------cceEEEEecCCccc
Q 015891 37 PANVHGFA---NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF------VPRIWVCTMSGQKT 107 (398)
Q Consensus 37 ~~~~vGR~---~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F------~~~~~v~~v~~~~~ 107 (398)
.+.+||-. +.++.|.++|.. ........+.|+|.+|.|||++++.+... ....+ -.++.+. +....+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~-P~~~Rmp~lLivG~snnGKT~Ii~rF~~~--hp~~~d~~~~~~PVv~vq-~P~~p~ 108 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEY-PKRHRMPNLLIVGDSNNGKTMIIERFRRL--HPPQSDEDAERIPVVYVQ-MPPEPD 108 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhC-CcccCCCceEEecCCCCcHHHHHHHHHHH--CCCCCCCCCccccEEEEe-cCCCCC
Confidence 46677755 344556666654 35567788999999999999999999865 11112 1355666 788899
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhC-CCcEEEecCCCCH---------HHHHHHHhHcCCCCCCE
Q 015891 108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIG-KRYLIVLDDFEDM---------EVCKHLSKVLPRGYGER 177 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVLDdv~~~---------~~~~~l~~~l~~~~gs~ 177 (398)
...+...|+..++...... .............+.. +.-+||+|++.+. +.+..|+.+-+.-.=+-
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~-----~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipi 183 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPR-----DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPI 183 (302)
T ss_pred hHHHHHHHHHHhCcccCCC-----CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCe
Confidence 9999999999999876433 2233333444445543 6679999999964 33333333222223344
Q ss_pred EEEEeCChHHHHH----hcCCCceEEcCCCCChhHHHHHHHh---hhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 178 LIITSRNEKLTTE----MVGEENLHQLQPLSDQESCWLIYRD---SVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 178 IIiTTR~~~v~~~----~~~~~~~~~l~~L~~~e~~~~l~~~---~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
|.+-|++.--+-. +.+.-..+.+++-..+++...|+.. .++-..+.. =...+.+..|...++|+.-.+..
T Consensus 184 V~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 184 VGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred EEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHHHH
Confidence 5555554322211 1223456777777776666666543 444332221 12345778899999998876554
No 261
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.58 E-value=8.3e-07 Score=81.51 Aligned_cols=80 Identities=13% Similarity=0.207 Sum_probs=56.5
Q ss_pred HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~ 184 (398)
..++++.+++... .......+.+++++..+.+.+..++-+++||++. |......+...+. ...|..||++||+
T Consensus 127 ~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 206 (252)
T TIGR03005 127 AMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE 206 (252)
T ss_pred HHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 3456666776532 1223347899999999999999999999999999 4444444444443 1237899999999
Q ss_pred hHHHHHh
Q 015891 185 EKLTTEM 191 (398)
Q Consensus 185 ~~v~~~~ 191 (398)
......+
T Consensus 207 ~~~~~~~ 213 (252)
T TIGR03005 207 MGFAREF 213 (252)
T ss_pred HHHHHHh
Confidence 8876554
No 262
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.2e-06 Score=81.31 Aligned_cols=170 Identities=18% Similarity=0.230 Sum_probs=110.1
Q ss_pred CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc--eEEEEecCCcccHHHHHHH
Q 015891 37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP--RIWVCTMSGQKTAESIVKR 114 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~~v~~v~~~~~~~~~~~~ 114 (398)
|+.+.+|+++++++...|...-....+.-+.|+|++|+|||+.++.+++. +...... .+++. +....+..+++..
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yIN-c~~~~t~~~i~~~ 92 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYIN-CLELRTPYQVLSK 92 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEe-eeeCCCHHHHHHH
Confidence 35599999999999998887434444555999999999999999999887 3333221 57777 7778889999999
Q ss_pred HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhC--CCcEEEecCCCCHHHH--HHHHhHcC--CCCCCE--EEEEeCChH
Q 015891 115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIG--KRYLIVLDDFEDMEVC--KHLSKVLP--RGYGER--LIITSRNEK 186 (398)
Q Consensus 115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVLDdv~~~~~~--~~l~~~l~--~~~gs~--IIiTTR~~~ 186 (398)
|++.++..+. ......+....+.+.+.. +..++|||+++....- +.|..++. ....++ +|.++.+..
T Consensus 93 i~~~~~~~p~-----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 93 ILNKLGKVPL-----TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHcCCCCC-----CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence 9999972221 124445556666666654 7899999999944111 34444443 222343 455666655
Q ss_pred HHHHhcC------CCceEEcCCCCChhHHHHHHHh
Q 015891 187 LTTEMVG------EENLHQLQPLSDQESCWLIYRD 215 (398)
Q Consensus 187 v~~~~~~------~~~~~~l~~L~~~e~~~~l~~~ 215 (398)
+...+.. ....+..+|=+. ++....+..
T Consensus 168 ~~~~ld~rv~s~l~~~~I~F~pY~a-~el~~Il~~ 201 (366)
T COG1474 168 FLDYLDPRVKSSLGPSEIVFPPYTA-EELYDILRE 201 (366)
T ss_pred HHHHhhhhhhhccCcceeeeCCCCH-HHHHHHHHH
Confidence 4433311 123356777776 445555554
No 263
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.58 E-value=1e-06 Score=80.67 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=55.8
Q ss_pred HHHHHHcCCC----C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeC
Q 015891 113 KRILKRLGVD----D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSR 183 (398)
Q Consensus 113 ~~il~~l~~~----~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR 183 (398)
..+++.+++. . ........+.+++++..+.+.+..++-+++||++. |......+...+. ...+..||++||
T Consensus 122 ~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH 201 (247)
T TIGR00972 122 EESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201 (247)
T ss_pred HHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEec
Confidence 4455666664 2 12233458899999999999999999999999999 4444444444443 122478999999
Q ss_pred ChHHHHHhcC
Q 015891 184 NEKLTTEMVG 193 (398)
Q Consensus 184 ~~~v~~~~~~ 193 (398)
+...+..+++
T Consensus 202 ~~~~~~~~~d 211 (247)
T TIGR00972 202 NMQQAARISD 211 (247)
T ss_pred CHHHHHHhCC
Confidence 9987766433
No 264
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.58 E-value=1.2e-06 Score=80.99 Aligned_cols=81 Identities=19% Similarity=0.291 Sum_probs=56.9
Q ss_pred HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeC
Q 015891 112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSR 183 (398)
Q Consensus 112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR 183 (398)
...+++.+++.. ........+.++.++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||
T Consensus 130 ~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH 209 (265)
T TIGR02769 130 IAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITH 209 (265)
T ss_pred HHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 345667777742 12333458899999999999999999999999998 4443333333332 223788999999
Q ss_pred ChHHHHHhc
Q 015891 184 NEKLTTEMV 192 (398)
Q Consensus 184 ~~~v~~~~~ 192 (398)
+...+..++
T Consensus 210 ~~~~~~~~~ 218 (265)
T TIGR02769 210 DLRLVQSFC 218 (265)
T ss_pred CHHHHHHHh
Confidence 998776543
No 265
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.58 E-value=7e-07 Score=92.56 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=59.7
Q ss_pred HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeC
Q 015891 112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSR 183 (398)
Q Consensus 112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR 183 (398)
..++++.+++.. ......+.+++++++..+++.|..++-|||+|++. |......+...+. ...|..||++||
T Consensus 443 ~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isH 522 (623)
T PRK10261 443 VAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISH 522 (623)
T ss_pred HHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 345677778742 23344568999999999999999999999999999 4433333333332 224788999999
Q ss_pred ChHHHHHhcCC
Q 015891 184 NEKLTTEMVGE 194 (398)
Q Consensus 184 ~~~v~~~~~~~ 194 (398)
+..++..+++.
T Consensus 523 dl~~v~~~~dr 533 (623)
T PRK10261 523 DMAVVERISHR 533 (623)
T ss_pred CHHHHHHhCCE
Confidence 99888776443
No 266
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=8.9e-07 Score=82.71 Aligned_cols=128 Identities=16% Similarity=0.105 Sum_probs=81.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC----cc--cc--------------ceEEEEecC----Cccc----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK----TQ--FV--------------PRIWVCTMS----GQKT---------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~----~~--F~--------------~~~~v~~v~----~~~~---------- 107 (398)
.-.+++|+|++|+|||||++.++.-.... .. |+ .+.++..-. ...+
T Consensus 32 ~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~ 111 (282)
T PRK13640 32 RGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLE 111 (282)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHH
Confidence 45789999999999999999998652111 00 00 011111000 0000
Q ss_pred --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
..+....+++.+++... .......+.++.++..+.+.+..++-++|||++. |....+.+...+. .
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~ 191 (282)
T PRK13640 112 NRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK 191 (282)
T ss_pred hCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 01223456667776542 2233458899999999999999999999999999 4444444444443 2
Q ss_pred CCCCEEEEEeCChHHHH
Q 015891 173 GYGERLIITSRNEKLTT 189 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~ 189 (398)
..|..||++||+.....
T Consensus 192 ~~g~tvli~tH~~~~~~ 208 (282)
T PRK13640 192 KNNLTVISITHDIDEAN 208 (282)
T ss_pred hcCCEEEEEecCHHHHH
Confidence 23789999999988765
No 267
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.57 E-value=1e-06 Score=91.37 Aligned_cols=82 Identities=11% Similarity=0.217 Sum_probs=58.3
Q ss_pred HHHHHHHcCCCC----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEE
Q 015891 112 VKRILKRLGVDD----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIIT 181 (398)
Q Consensus 112 ~~~il~~l~~~~----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiT 181 (398)
..++++.+++.. ........+++++++..|++.|..++-+||||++. |......+...+. ...|..||++
T Consensus 146 ~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~i 225 (623)
T PRK10261 146 AKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFI 225 (623)
T ss_pred HHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 345677778753 12344568999999999999999999999999999 4433333333332 2337889999
Q ss_pred eCChHHHHHhcC
Q 015891 182 SRNEKLTTEMVG 193 (398)
Q Consensus 182 TR~~~v~~~~~~ 193 (398)
||+...+..+++
T Consensus 226 tHdl~~~~~~ad 237 (623)
T PRK10261 226 THDMGVVAEIAD 237 (623)
T ss_pred cCCHHHHHHhCC
Confidence 999888776543
No 268
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.57 E-value=9.5e-07 Score=80.91 Aligned_cols=132 Identities=20% Similarity=0.229 Sum_probs=81.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCcc--ccc-----------eEEEEecCCc--------------------c--
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ--FVP-----------RIWVCTMSGQ--------------------K-- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~-----------~~~v~~v~~~--------------------~-- 106 (398)
.-.+++|+|++|+|||||++.+..-...... |+. ...+.++.+. .
T Consensus 21 ~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~ 100 (248)
T PRK03695 21 AGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRT 100 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCCCc
Confidence 4568999999999999999999754211100 000 0001111110 0
Q ss_pred -cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhC-------CCcEEEecCCC---CHHHHHHHHhHcC--C
Q 015891 107 -TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIG-------KRYLIVLDDFE---DMEVCKHLSKVLP--R 172 (398)
Q Consensus 107 -~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~-------k~~LlVLDdv~---~~~~~~~l~~~l~--~ 172 (398)
.......++++.+++... .......+.+++++..+.+.+.. ++-+++||++. |....+.+...+. .
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~ 180 (248)
T PRK03695 101 EAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC 180 (248)
T ss_pred HHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 012234566777777542 22234478999999999999986 56999999998 4444444444443 2
Q ss_pred CCCCEEEEEeCChHHHHHhcC
Q 015891 173 GYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~~ 193 (398)
..+..||++||+.+....+++
T Consensus 181 ~~~~tvi~~sH~~~~~~~~~d 201 (248)
T PRK03695 181 QQGIAVVMSSHDLNHTLRHAD 201 (248)
T ss_pred hCCCEEEEEecCHHHHHHhCC
Confidence 347899999999886655433
No 269
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.57 E-value=6.5e-07 Score=79.22 Aligned_cols=80 Identities=13% Similarity=0.174 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCCCCCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHH----HHHHhHcCCCCCCEEEEE
Q 015891 110 SIVKRILKRLGVDDGTTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVC----KHLSKVLPRGYGERLIIT 181 (398)
Q Consensus 110 ~~~~~il~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~----~~l~~~l~~~~gs~IIiT 181 (398)
.....+++.++......... ..+.+++++..+++++..+|-|+|||++.+ .... +.+........+..+|+.
T Consensus 150 ~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~V 229 (257)
T COG1119 150 AAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFV 229 (257)
T ss_pred HHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 34567788888775433333 378899999999999999999999999983 3323 233333323346677777
Q ss_pred eCChHHHH
Q 015891 182 SRNEKLTT 189 (398)
Q Consensus 182 TR~~~v~~ 189 (398)
||..+-+.
T Consensus 230 tHh~eEi~ 237 (257)
T COG1119 230 THHAEEIP 237 (257)
T ss_pred Ecchhhcc
Confidence 77654433
No 270
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.57 E-value=7.8e-07 Score=89.79 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=60.1
Q ss_pred HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
...++..+++.. ........+++++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+
T Consensus 371 ~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd 450 (491)
T PRK10982 371 TQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSE 450 (491)
T ss_pred HHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 345566666642 23344558999999999999999999999999999 4433333333332 2347889999999
Q ss_pred hHHHHHhcCCCceEEc
Q 015891 185 EKLTTEMVGEENLHQL 200 (398)
Q Consensus 185 ~~v~~~~~~~~~~~~l 200 (398)
.+.+..++ ++++.+
T Consensus 451 ~~~~~~~~--d~v~~l 464 (491)
T PRK10982 451 MPELLGIT--DRILVM 464 (491)
T ss_pred hHHHHhhC--CEEEEE
Confidence 88877653 344544
No 271
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.57 E-value=6.6e-07 Score=88.52 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhHcCCCCCCEEEEE
Q 015891 111 IVKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKVLPRGYGERLIIT 181 (398)
Q Consensus 111 ~~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~l~~~~gs~IIiT 181 (398)
.+.+++...++... ...+.+.+++++++..+++.|..+|.+||+|++.+. ...+.|.. +...-|...|++
T Consensus 408 rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~-lq~e~g~t~lfI 486 (539)
T COG1123 408 RVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD-LQEELGLTYLFI 486 (539)
T ss_pred HHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH-HHHHhCCEEEEE
Confidence 45666777777753 344556899999999999999999999999999843 22233332 223458999999
Q ss_pred eCChHHHHHhcCCCceEEcCCCCC
Q 015891 182 SRNEKLTTEMVGEENLHQLQPLSD 205 (398)
Q Consensus 182 TR~~~v~~~~~~~~~~~~l~~L~~ 205 (398)
|||..+...+++...++..+.+-+
T Consensus 487 SHDl~vV~~i~drv~vm~~G~iVE 510 (539)
T COG1123 487 SHDLAVVRYIADRVAVMYDGRIVE 510 (539)
T ss_pred eCCHHHHHhhCceEEEEECCeEEE
Confidence 999999998876544444444443
No 272
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.57 E-value=8.4e-07 Score=94.37 Aligned_cols=203 Identities=19% Similarity=0.148 Sum_probs=115.1
Q ss_pred CcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc---ccceEEEEecCCcc---------
Q 015891 39 NVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ---FVPRIWVCTMSGQK--------- 106 (398)
Q Consensus 39 ~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~---F~~~~~v~~v~~~~--------- 106 (398)
.++||+.+++.|...+... ......++.+.|.+|||||+|++++... +.+. |-...+-. ...+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v-~~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q-~~~~ipl~~lvq~~ 76 (849)
T COG3899 1 PLYGRETELAQLLAAFDRV-SKGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQ-FERNIPLSPLVQAF 76 (849)
T ss_pred CCCchHhHHHHHHHHHHHH-hCCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhccc-ccCCCchHHHHHHH
Confidence 4799999999999999874 4455669999999999999999999876 3322 11111111 11110
Q ss_pred -------------cHHHHHHHHHHHcCCCCCC---------------CCCcC--CCchHHH-----HHHHHHHH-hCCCc
Q 015891 107 -------------TAESIVKRILKRLGVDDGT---------------TNSFE--GQGLAFL-----DYVLQQQL-IGKRY 150 (398)
Q Consensus 107 -------------~~~~~~~~il~~l~~~~~~---------------~~~~~--~~~~~~~-----~~~l~~~l-~~k~~ 150 (398)
....-...++..+|..... .+..+ ....+.. ...+.... ..+|.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 1111122333333322110 00001 0111111 11112222 34699
Q ss_pred EEEecCCC--CHHHHHHHHhHcCCCC-------CCEEEEEeCCh-HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCC
Q 015891 151 LIVLDDFE--DMEVCKHLSKVLPRGY-------GERLIITSRNE-KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDK 220 (398)
Q Consensus 151 LlVLDdv~--~~~~~~~l~~~l~~~~-------gs~IIiTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~ 220 (398)
++|+||+. |...++.+........ ....+.|.+.. .....-......+.|.||+. .+...+....++..
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~-~d~~~lV~~~l~~~ 235 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSR-ADTNQLVAATLGCT 235 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCch-hhHHHHHHHHhCCc
Confidence 99999997 6655555544433211 22233333333 22222224467899999999 55778888777764
Q ss_pred CCcchHHHHHHHHHHHHhcCCCchhhhccC
Q 015891 221 DAQLKSQARKDLEEKLEKLQGQNEDAVNFP 250 (398)
Q Consensus 221 ~~~~~~~~~~~~~~I~~~c~GlPlai~~~a 250 (398)
.... .+..+.|.++..|+|+-+..+.
T Consensus 236 ~~~~----~p~~~~i~~kt~GnPfFi~e~l 261 (849)
T COG3899 236 KLLP----APLLELIFEKTKGNPFFIEEFL 261 (849)
T ss_pred cccc----chHHHHHHHHhcCCCccHHHHH
Confidence 3332 2377889999999999977654
No 273
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=4.9e-07 Score=82.22 Aligned_cols=63 Identities=13% Similarity=0.215 Sum_probs=47.8
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhc
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~ 192 (398)
..+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+.+.+..++
T Consensus 137 ~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~ 204 (237)
T PRK11614 137 TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLA 204 (237)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhC
Confidence 47889999999999999999999999999 4444444444432 234788999999987665543
No 274
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=1.5e-06 Score=79.79 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=48.3
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~ 192 (398)
...+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+......++
T Consensus 146 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~ 213 (251)
T PRK14249 146 LALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARAS 213 (251)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhC
Confidence 347899999999999999999999999998 4443333333332 124689999999988777653
No 275
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.57 E-value=1.1e-06 Score=89.03 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=83.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc---------------ceEEEEe---cCCcc--------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV---------------PRIWVCT---MSGQK-------------- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~---------------~~~~v~~---v~~~~-------------- 106 (398)
.-.+++|+|++|+|||||++.++.-... .. .|. .+.++.. +....
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 108 (501)
T PRK11288 29 AGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHK 108 (501)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccc
Confidence 4568999999999999999999764210 00 000 0111110 00000
Q ss_pred -------cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891 107 -------TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG 173 (398)
Q Consensus 107 -------~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~ 173 (398)
.......++++.+++... .......+++++++..+.+.+..++-+++||++. |....+.+...+. ..
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 188 (501)
T PRK11288 109 GGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188 (501)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 011234556777777543 2233458999999999999999999999999999 4444444443332 23
Q ss_pred CCCEEEEEeCChHHHHHhc
Q 015891 174 YGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~~~ 192 (398)
.|..||++||+...+..++
T Consensus 189 ~g~tiiiitHd~~~~~~~~ 207 (501)
T PRK11288 189 EGRVILYVSHRMEEIFALC 207 (501)
T ss_pred CCCEEEEEeCCHHHHHHhC
Confidence 4788999999988776653
No 276
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.57 E-value=2e-06 Score=78.90 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=55.3
Q ss_pred HHHHHHcCCCC--CCCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 113 KRILKRLGVDD--GTTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 113 ~~il~~l~~~~--~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
..++..+++.. ...... ..+.++.++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+
T Consensus 131 ~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~ 210 (252)
T CHL00131 131 NEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY 210 (252)
T ss_pred HHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 34566666652 122222 37899999999999999999999999999 4444444444443 2247889999999
Q ss_pred hHHHHH
Q 015891 185 EKLTTE 190 (398)
Q Consensus 185 ~~v~~~ 190 (398)
......
T Consensus 211 ~~~~~~ 216 (252)
T CHL00131 211 QRLLDY 216 (252)
T ss_pred HHHHHh
Confidence 887765
No 277
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.57 E-value=1.3e-06 Score=80.27 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=48.6
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcC
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+...+..+++
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d 216 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSD 216 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCC
Confidence 457899999999999999999999999999 4444444444433 1236789999999887765433
No 278
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=8.4e-07 Score=81.59 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=48.3
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~ 192 (398)
...+++++++..+.+.+..++-++|||++. |....+.+...+. ...+..||++||+...+..++
T Consensus 149 ~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~ 216 (254)
T PRK14273 149 LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRIS 216 (254)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 348899999999999999999999999998 4444433433332 123678999999998876653
No 279
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=8e-07 Score=82.54 Aligned_cols=128 Identities=13% Similarity=0.165 Sum_probs=79.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc---------------ccc-ceEEEEec----------CCc---------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT---------------QFV-PRIWVCTM----------SGQ--------- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~---------------~F~-~~~~v~~v----------~~~--------- 105 (398)
.-.+++|.|++|+|||||++.++.-... .. .+. .+.++..- ..+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~ 113 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK 113 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC
Confidence 4568999999999999999999764211 00 000 01111100 000
Q ss_pred cc---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891 106 KT---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG 175 (398)
Q Consensus 106 ~~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g 175 (398)
.. ......++++.+++... .......+.+++++..+.+++..++-+++||++. |....+.+...+. ...+
T Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~ 193 (271)
T PRK13632 114 VPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRK 193 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 00 11123455666666532 2223458899999999999999999999999999 4444444444443 1224
Q ss_pred CEEEEEeCChHHHH
Q 015891 176 ERLIITSRNEKLTT 189 (398)
Q Consensus 176 s~IIiTTR~~~v~~ 189 (398)
..||++||+.....
T Consensus 194 ~tiii~sH~~~~~~ 207 (271)
T PRK13632 194 KTLISITHDMDEAI 207 (271)
T ss_pred cEEEEEEechhHHh
Confidence 78999999987664
No 280
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.56 E-value=1.1e-06 Score=89.98 Aligned_cols=136 Identities=18% Similarity=0.205 Sum_probs=87.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccceEEEEecCCc-------ccH----------------HHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPRIWVCTMSGQ-------KTA----------------ESIVKRI 115 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~~~v~~v~~~-------~~~----------------~~~~~~i 115 (398)
.-.+++|+|++|+|||||++.++..... .. .|.....+.++.+. .+. ......+
T Consensus 347 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 426 (552)
T TIGR03719 347 PGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAY 426 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHH
Confidence 4568999999999999999999865211 01 01110011111111 011 1123456
Q ss_pred HHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891 116 LKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 116 l~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~ 190 (398)
+..+++... .......+++++++..+.+.+..++-+++||++. |....+.+...+..-.+ .||++||+...+..
T Consensus 427 l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~viivsHd~~~~~~ 505 (552)
T TIGR03719 427 VGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAG-CAVVISHDRWFLDR 505 (552)
T ss_pred HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence 777777532 3334558999999999999999999999999999 45555555555542224 69999999988776
Q ss_pred hcCCCceEEc
Q 015891 191 MVGEENLHQL 200 (398)
Q Consensus 191 ~~~~~~~~~l 200 (398)
++ ++++.+
T Consensus 506 ~~--d~i~~l 513 (552)
T TIGR03719 506 IA--THILAF 513 (552)
T ss_pred hC--CEEEEE
Confidence 53 345555
No 281
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.56 E-value=1.3e-06 Score=85.11 Aligned_cols=179 Identities=16% Similarity=0.270 Sum_probs=100.9
Q ss_pred CCCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891 36 PPANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK 106 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~ 106 (398)
..+++.|+++.+++|.+.+... -+-..++.|.|+|++|+|||++|+++++. .... |+. +..
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~-v~~-- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIR-VVG-- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEE-eeh--
Confidence 3467889999999999876431 11234677999999999999999999987 3322 222 211
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC--
Q 015891 107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP-- 171 (398)
Q Consensus 107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~-- 171 (398)
..+.... .+ .........+...-...+.+|+|||++.. +....+...+.
T Consensus 199 --~~l~~~~---~g-----------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l 262 (389)
T PRK03992 199 --SELVQKF---IG-----------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEM 262 (389)
T ss_pred --HHHhHhh---cc-----------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhc
Confidence 1111100 00 11112222333333456789999999843 12222333321
Q ss_pred ----CCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891 172 ----RGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN 243 (398)
Q Consensus 172 ----~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 243 (398)
...+..||.||...+.... +. ..+..+++++.+. ++...+|+..+........- ....+++.+.|..
T Consensus 263 d~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~-~~R~~Il~~~~~~~~~~~~~----~~~~la~~t~g~s 337 (389)
T PRK03992 263 DGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDE-EGRLEILKIHTRKMNLADDV----DLEELAELTEGAS 337 (389)
T ss_pred cccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCH-HHHHHHHHHHhccCCCCCcC----CHHHHHHHcCCCC
Confidence 1235667878876543222 11 2256789988877 67778887655433221111 3456677777765
Q ss_pred hh
Q 015891 244 ED 245 (398)
Q Consensus 244 la 245 (398)
-+
T Consensus 338 ga 339 (389)
T PRK03992 338 GA 339 (389)
T ss_pred HH
Confidence 43
No 282
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.56 E-value=9.9e-07 Score=79.29 Aligned_cols=69 Identities=14% Similarity=0.059 Sum_probs=50.1
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+......+ ++++.+
T Consensus 138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~---d~i~~l 210 (221)
T cd03244 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDS---DRILVL 210 (221)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC---CEEEEE
Confidence 347889999999999999999999999999 4444444444443 22357899999998776542 444444
No 283
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=1.1e-06 Score=81.92 Aligned_cols=129 Identities=15% Similarity=0.123 Sum_probs=81.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccceE-----------EEEecCCcc---------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVPRI-----------WVCTMSGQK--------------------- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~~~-----------~v~~v~~~~--------------------- 106 (398)
.-.+++|.|++|+|||||++.++...... . .|+..- -+.++.+..
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~ 111 (279)
T PRK13635 32 EGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG 111 (279)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC
Confidence 45689999999999999999997552110 0 011000 000011100
Q ss_pred -c---HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891 107 -T---AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG 175 (398)
Q Consensus 107 -~---~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g 175 (398)
. .......++..+++.... ......+.+++++..+.+.+..++-+|+||++. |....+.+...+. ...|
T Consensus 112 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~ 191 (279)
T PRK13635 112 VPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKG 191 (279)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 0 012245556666665422 223348899999999999999999999999999 4554445544443 2237
Q ss_pred CEEEEEeCChHHHHH
Q 015891 176 ERLIITSRNEKLTTE 190 (398)
Q Consensus 176 s~IIiTTR~~~v~~~ 190 (398)
.+||++||+.+....
T Consensus 192 ~tilivsH~~~~~~~ 206 (279)
T PRK13635 192 ITVLSITHDLDEAAQ 206 (279)
T ss_pred CEEEEEecCHHHHHc
Confidence 899999999887653
No 284
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=9.4e-07 Score=81.97 Aligned_cols=129 Identities=16% Similarity=0.115 Sum_probs=80.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--ccc--------------ceEEEEecCC----ccc-------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFV--------------PRIWVCTMSG----QKT------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~--------------~~~~v~~v~~----~~~------------- 107 (398)
.-.+++|.|++|+|||||++.+..-... .. .++ ...++..-.. ...
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~ 113 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA 113 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC
Confidence 4668999999999999999999764211 00 000 0112110000 000
Q ss_pred -----HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891 108 -----AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG 175 (398)
Q Consensus 108 -----~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g 175 (398)
.......+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|
T Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~ 193 (269)
T PRK13648 114 VPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHN 193 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 01223456666776532 2233458899999999999999999999999999 4444444444443 2237
Q ss_pred CEEEEEeCChHHHHH
Q 015891 176 ERLIITSRNEKLTTE 190 (398)
Q Consensus 176 s~IIiTTR~~~v~~~ 190 (398)
.+||++||+...+..
T Consensus 194 ~tiiivtH~~~~~~~ 208 (269)
T PRK13648 194 ITIISITHDLSEAME 208 (269)
T ss_pred CEEEEEecCchHHhc
Confidence 889999999876653
No 285
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=9.4e-07 Score=82.58 Aligned_cols=129 Identities=18% Similarity=0.148 Sum_probs=83.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c-----------------cccc-eEEEEecCCcc----------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T-----------------QFVP-RIWVCTMSGQK---------------- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~-----------------~F~~-~~~v~~v~~~~---------------- 106 (398)
.-.+++|+|++|+|||||++.++.-.... . .+.. +.++ .+..
T Consensus 31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v---~q~~~~~~~~~tv~e~l~~~ 107 (283)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMV---FQDPDNQLFSASVYQDVSFG 107 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEE---ecCcchhhccccHHHHHHhH
Confidence 45689999999999999999997542100 0 0000 1111 1110
Q ss_pred ------c---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891 107 ------T---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-- 171 (398)
Q Consensus 107 ------~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-- 171 (398)
. .......+++.+++... .......+.+++++..+.+.|..++-++|||++. |......+...+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l 187 (283)
T PRK13636 108 AVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEM 187 (283)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 0 01234555666776542 2233448999999999999999999999999999 4544444444432
Q ss_pred -CCCCCEEEEEeCChHHHHHhcC
Q 015891 172 -RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 172 -~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...|..||++||+.+.+..+++
T Consensus 188 ~~~~g~tillvsH~~~~~~~~~d 210 (283)
T PRK13636 188 QKELGLTIIIATHDIDIVPLYCD 210 (283)
T ss_pred HHhCCCEEEEEecCHHHHHHhCC
Confidence 2237899999999887765433
No 286
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.56 E-value=1e-06 Score=91.52 Aligned_cols=130 Identities=19% Similarity=0.223 Sum_probs=84.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccceEEEEecCCc-------ccH----------------HHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVPRIWVCTMSGQ-------KTA----------------ESIVKRI 115 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~~~~v~~v~~~-------~~~----------------~~~~~~i 115 (398)
.-.+++|+|++|+|||||++.++..... .. .|...+.+.++.+. .+. ......+
T Consensus 344 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 423 (635)
T PRK11147 344 RGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGY 423 (635)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHH
Confidence 4458999999999999999999875211 11 11111111112211 011 1123445
Q ss_pred HHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891 116 LKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 116 l~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~ 190 (398)
+..+++... .......+++++++..+.+.+..++-+|+||++. |....+.+...+... ++.||++||+...+..
T Consensus 424 l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tvi~vSHd~~~~~~ 502 (635)
T PRK11147 424 LQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY-QGTVLLVSHDRQFVDN 502 (635)
T ss_pred HHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-CCeEEEEECCHHHHHH
Confidence 556665421 2233458999999999999999999999999999 455555666655432 4589999999988876
Q ss_pred hc
Q 015891 191 MV 192 (398)
Q Consensus 191 ~~ 192 (398)
++
T Consensus 503 ~~ 504 (635)
T PRK11147 503 TV 504 (635)
T ss_pred hc
Confidence 53
No 287
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.55 E-value=1.1e-06 Score=78.53 Aligned_cols=132 Identities=17% Similarity=0.076 Sum_probs=73.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCC-CCcc---ccceE-EEE---ecCCcccHHHH---------------HHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPD-VKTQ---FVPRI-WVC---TMSGQKTAESI---------------VKRILKR 118 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~-~~~~---F~~~~-~v~---~v~~~~~~~~~---------------~~~il~~ 118 (398)
.-.+++|+|++|+|||||++.++.-.. .... +.... .+. .+....+..+. ...+...
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 91 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQL 91 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 457899999999999999999986521 1111 11110 010 01111111111 1111222
Q ss_pred cCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHc-CCCCCCEEEEEeCChHHHHHhcC
Q 015891 119 LGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVL-PRGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 119 l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l-~~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
+++... .......+.+++++..+.+.+..++-++++|++. +......+...+ ....+..+|++||+......+++
T Consensus 92 ~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d 171 (213)
T PRK15177 92 TQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCH 171 (213)
T ss_pred hChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcC
Confidence 232221 1122347888999999999999999999999985 333322233222 11123358999999987765433
No 288
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.55 E-value=2.9e-06 Score=74.25 Aligned_cols=89 Identities=18% Similarity=0.208 Sum_probs=57.9
Q ss_pred CCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCCh-HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCC
Q 015891 147 GKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNE-KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDA 222 (398)
Q Consensus 147 ~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~ 222 (398)
+.+-++|+||++. .+..+.|...+. ..+.+.+|++|++. .+...+......+++.|++. ++....+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~-~~~~~~l~~~-g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSE-EALLQWLIRQ-G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCH-HHHHHHHHHc-C----
Confidence 4567999999984 345556666664 23456677766653 34444444567899999998 5555555554 2
Q ss_pred cchHHHHHHHHHHHHhcCCCchh
Q 015891 223 QLKSQARKDLEEKLEKLQGQNED 245 (398)
Q Consensus 223 ~~~~~~~~~~~~I~~~c~GlPla 245 (398)
.. .+.+..|++.++|.|..
T Consensus 169 -i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 -IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred -CC---HHHHHHHHHHcCCCccc
Confidence 11 23678899999998864
No 289
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.55 E-value=1.3e-06 Score=76.87 Aligned_cols=123 Identities=13% Similarity=0.161 Sum_probs=74.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE--------------ecCCcccH---HHHHHHHHHHcCCCC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC--------------TMSGQKTA---ESIVKRILKRLGVDD 123 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~--------------~v~~~~~~---~~~~~~il~~l~~~~ 123 (398)
..-.+++|.|++|+|||||++.+..-.. .....+.+++. ++.+.... ..+...+.......
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~- 110 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR- 110 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-
Confidence 3457899999999999999999987520 01222222221 11221110 01111111100000
Q ss_pred CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChH-HHHHh
Q 015891 124 GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEK-LTTEM 191 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~-v~~~~ 191 (398)
..+.++.++..+.+++..++-++++|++. |....+.+...+. ...+..||++||+.. ....+
T Consensus 111 ------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~ 178 (194)
T cd03213 111 ------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFEL 178 (194)
T ss_pred ------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHh
Confidence 46889999999999999999999999998 4444444444443 234789999999975 44443
No 290
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.54 E-value=1.4e-06 Score=80.83 Aligned_cols=81 Identities=16% Similarity=0.282 Sum_probs=57.3
Q ss_pred HHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeC
Q 015891 112 VKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSR 183 (398)
Q Consensus 112 ~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR 183 (398)
...++..+++.. ........+.+++++..+.+.+..++-+|+||++. |....+.+...+. ...+..||++||
T Consensus 131 ~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH 210 (268)
T PRK10419 131 ASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITH 210 (268)
T ss_pred HHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEEC
Confidence 455666777642 22333457899999999999999999999999999 4443334433332 223789999999
Q ss_pred ChHHHHHhc
Q 015891 184 NEKLTTEMV 192 (398)
Q Consensus 184 ~~~v~~~~~ 192 (398)
+......++
T Consensus 211 ~~~~i~~~~ 219 (268)
T PRK10419 211 DLRLVERFC 219 (268)
T ss_pred CHHHHHHhC
Confidence 988776643
No 291
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=1e-06 Score=82.26 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=57.4
Q ss_pred HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~ 184 (398)
...+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+
T Consensus 125 ~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~ 204 (280)
T PRK13633 125 VDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY 204 (280)
T ss_pred HHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4556666776542 2233458999999999999999999999999999 4444444444443 2247899999999
Q ss_pred hHHHHH
Q 015891 185 EKLTTE 190 (398)
Q Consensus 185 ~~v~~~ 190 (398)
.+.+..
T Consensus 205 ~~~~~~ 210 (280)
T PRK13633 205 MEEAVE 210 (280)
T ss_pred hHHHhc
Confidence 887654
No 292
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=6.6e-07 Score=78.64 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=76.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEE-------------EecCCcccH---HHHHHHHHHHcCCCCCC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWV-------------CTMSGQKTA---ESIVKRILKRLGVDDGT 125 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v-------------~~v~~~~~~---~~~~~~il~~l~~~~~~ 125 (398)
.-.+++|+|++|+|||||++.++..... ......+++ .++.+.... ......+.......
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--- 107 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRKTA-GVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh---
Confidence 4578999999999999999999864110 001111111 112221110 11122221100000
Q ss_pred CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChH-HHHHhcCCCceEE
Q 015891 126 TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEK-LTTEMVGEENLHQ 199 (398)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~-v~~~~~~~~~~~~ 199 (398)
..+.++.++..+.+.+..++-++++|++. |....+.+...+. ...+..||++||+.+ ....++ ++++.
T Consensus 108 ----~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~--d~i~~ 181 (192)
T cd03232 108 ----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKF--DRLLL 181 (192)
T ss_pred ----cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhC--CEEEE
Confidence 46889999999999999999999999998 4444444444433 224789999999976 333332 44555
Q ss_pred c
Q 015891 200 L 200 (398)
Q Consensus 200 l 200 (398)
+
T Consensus 182 l 182 (192)
T cd03232 182 L 182 (192)
T ss_pred E
Confidence 4
No 293
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.54 E-value=1.1e-06 Score=89.44 Aligned_cols=132 Identities=20% Similarity=0.210 Sum_probs=84.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCcc--cc-----------------ceEEEEec-----CCccc----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ--FV-----------------PRIWVCTM-----SGQKT---------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~--F~-----------------~~~~v~~v-----~~~~~---------- 107 (398)
.-.+++|+|++|+|||||++.++.-...... |+ .+.++..- ....+
T Consensus 311 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~ 390 (529)
T PRK15134 311 PGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLR 390 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHH
Confidence 4568999999999999999999764210000 10 01121100 00000
Q ss_pred ----------HHHHHHHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891 108 ----------AESIVKRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP- 171 (398)
Q Consensus 108 ----------~~~~~~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~- 171 (398)
......+++..+++.. ........+++++++..+++.+..++-++|||++. |....+.+...+.
T Consensus 391 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 470 (529)
T PRK15134 391 VHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS 470 (529)
T ss_pred hccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHH
Confidence 0122345677777752 23344568999999999999999999999999999 4444444444443
Q ss_pred --CCCCCEEEEEeCChHHHHHhcC
Q 015891 172 --RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 172 --~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...|..||++||+...+..+++
T Consensus 471 ~~~~~~~tvi~vsHd~~~~~~~~d 494 (529)
T PRK15134 471 LQQKHQLAYLFISHDLHVVRALCH 494 (529)
T ss_pred HHHhhCCEEEEEeCCHHHHHHhcC
Confidence 2237789999999987776543
No 294
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.54 E-value=1.1e-06 Score=89.44 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=57.9
Q ss_pred HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~ 184 (398)
..+++..+++... .......+++++++..+++.+..++-+|+||++. |....+.+...+. ...|..||++||+
T Consensus 149 ~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd 228 (520)
T TIGR03269 149 AVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228 (520)
T ss_pred HHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 3456667777542 2233458999999999999999999999999999 4444444433332 2247889999999
Q ss_pred hHHHHHhc
Q 015891 185 EKLTTEMV 192 (398)
Q Consensus 185 ~~v~~~~~ 192 (398)
.+.+..++
T Consensus 229 ~~~~~~~~ 236 (520)
T TIGR03269 229 PEVIEDLS 236 (520)
T ss_pred HHHHHHhc
Confidence 98877653
No 295
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.8e-06 Score=80.03 Aligned_cols=79 Identities=9% Similarity=0.093 Sum_probs=54.6
Q ss_pred HHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeC
Q 015891 113 KRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSR 183 (398)
Q Consensus 113 ~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR 183 (398)
..+++.+++.. ........+.++.++..+.+.+..++-+|+||++. |....+.+...+. ...+..||++||
T Consensus 141 ~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH 220 (267)
T PRK14235 141 ETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTH 220 (267)
T ss_pred HHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 44555666632 11223457899999999999999999999999999 4444444443332 123578999999
Q ss_pred ChHHHHHh
Q 015891 184 NEKLTTEM 191 (398)
Q Consensus 184 ~~~v~~~~ 191 (398)
+...+..+
T Consensus 221 ~~~~~~~~ 228 (267)
T PRK14235 221 SMQQAARV 228 (267)
T ss_pred CHHHHHhh
Confidence 98877654
No 296
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.54 E-value=1.4e-06 Score=77.08 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=74.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEE------------------EecCCcccH--HHHHHHHHHHcCC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWV------------------CTMSGQKTA--ESIVKRILKRLGV 121 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v------------------~~v~~~~~~--~~~~~~il~~l~~ 121 (398)
.-.+++|+|++|+|||||++.+...... ..-.+.+.+ .++.+.... .....+++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~--- 100 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKY-EVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY--- 100 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcC-CCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh---
Confidence 4579999999999999999999875210 001111111 111221110 0111122211
Q ss_pred CCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHH
Q 015891 122 DDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~ 190 (398)
.....+.++.++..+.+.+..++-++++|++. |....+.+...+. ...+..||++||+......
T Consensus 101 -----~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 101 -----VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred -----ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 11246889999999999999999999999999 4433434433332 1247899999999987764
No 297
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.54 E-value=2.4e-06 Score=75.84 Aligned_cols=126 Identities=15% Similarity=0.175 Sum_probs=76.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccc-eEEEEecCCc-----------------ccHHHHHHHHHHHc
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVP-RIWVCTMSGQ-----------------KTAESIVKRILKRL 119 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~-~~~v~~v~~~-----------------~~~~~~~~~il~~l 119 (398)
..-.+++|.|++|+|||||++.+..-.... . .|+. +.++ .+. ... ......++.+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~---~q~~~l~~~t~~enl~~~~~~~~-~~~~~~~~~~ 104 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYV---SQEPWIQNGTIRENILFGKPFDE-ERYEKVIKAC 104 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEE---ecCchhccCcHHHHhccCCCcCH-HHHHHHHHHc
Confidence 356789999999999999999998752111 1 1221 1111 111 111 1122222222
Q ss_pred CCC-----------C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHh-HcC--CCCCCEEEEE
Q 015891 120 GVD-----------D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSK-VLP--RGYGERLIIT 181 (398)
Q Consensus 120 ~~~-----------~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~-~l~--~~~gs~IIiT 181 (398)
++. . ........+.+++++..+.+.+..++-++++|++. |....+.+.. .+. ...+..||++
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~ 184 (204)
T cd03250 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILV 184 (204)
T ss_pred CcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 211 0 01122347889999999999999999999999998 4444443433 222 2347899999
Q ss_pred eCChHHHHH
Q 015891 182 SRNEKLTTE 190 (398)
Q Consensus 182 TR~~~v~~~ 190 (398)
||+......
T Consensus 185 sh~~~~~~~ 193 (204)
T cd03250 185 THQLQLLPH 193 (204)
T ss_pred eCCHHHHhh
Confidence 999877664
No 298
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.54 E-value=7.6e-07 Score=78.52 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=84.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE------------ecCC------------------------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC------------TMSG------------------------ 104 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~------------~v~~------------------------ 104 (398)
..-++.++.|++|+||||..+.+..= +...-..+-|-. ++..
T Consensus 26 ~~G~i~GllG~NGAGKTTtfRmILgl--le~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~ 103 (300)
T COG4152 26 PPGEIFGLLGPNGAGKTTTFRMILGL--LEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP 103 (300)
T ss_pred cCCeEEEeecCCCCCccchHHHHhcc--CCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCc
Confidence 45689999999999999999999764 211111122211 1110
Q ss_pred cccHHHHHHHHHHHcCCCCCCCCCcC-CCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEE
Q 015891 105 QKTAESIVKRILKRLGVDDGTTNSFE-GQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERL 178 (398)
Q Consensus 105 ~~~~~~~~~~il~~l~~~~~~~~~~~-~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~I 178 (398)
......-+..+++.+.+.......+. .+.+.++...+...+-++|-|+|||++. |+-..+.|..... ...|.+|
T Consensus 104 ~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatI 183 (300)
T COG4152 104 KAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATI 183 (300)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEE
Confidence 11223345566777776654443333 6777788888888889999999999998 4444455554443 5679999
Q ss_pred EEEeCChHHHHHhcC
Q 015891 179 IITSRNEKLTTEMVG 193 (398)
Q Consensus 179 IiTTR~~~v~~~~~~ 193 (398)
|+.||...-+..+|+
T Consensus 184 ifSsH~Me~vEeLCD 198 (300)
T COG4152 184 IFSSHRMEHVEELCD 198 (300)
T ss_pred EEecchHHHHHHHhh
Confidence 999998654444433
No 299
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.54 E-value=1.5e-06 Score=76.70 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=72.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC--C----CCc-----c-c--------cceEEEEecCCccc------HHHHHHHHHHH
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHKP--D----VKT-----Q-F--------VPRIWVCTMSGQKT------AESIVKRILKR 118 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~~--~----~~~-----~-F--------~~~~~v~~v~~~~~------~~~~~~~il~~ 118 (398)
+++|+|++|+|||||+++++.-. . ... - | .....+..+.++++ ......++++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l~~ 103 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEA 103 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHHhC
Confidence 88999999999999999985210 0 000 0 0 01122222222221 12233444444
Q ss_pred cCCCCCCCCCcCCCchHHHHHHHHHHHh----CCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHH
Q 015891 119 LGVDDGTTNSFEGQGLAFLDYVLQQQLI----GKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 119 l~~~~~~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~ 190 (398)
...........+.+++++..+...+. ..+-+++||++. |....+.+...+. ...+..||++||+.+....
T Consensus 104 --~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~ 181 (197)
T cd03278 104 --PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEA 181 (197)
T ss_pred --CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhh
Confidence 11122223347888888888988875 456899999998 4444444444443 2235789999999987653
No 300
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.53 E-value=2e-06 Score=83.20 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=58.6
Q ss_pred HHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~ 184 (398)
..++++.+++.... ......+.+++++..+.+.|..++-++++|++. |......+...+. ...+.+||++||+
T Consensus 145 a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHd 224 (382)
T TIGR03415 145 VDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHD 224 (382)
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45667777876432 233448999999999999999999999999998 4433333333332 2237899999999
Q ss_pred hHHHHHhcC
Q 015891 185 EKLTTEMVG 193 (398)
Q Consensus 185 ~~v~~~~~~ 193 (398)
.+.+..+++
T Consensus 225 l~e~~~l~D 233 (382)
T TIGR03415 225 LDEALKIGN 233 (382)
T ss_pred HHHHHHhCC
Confidence 988766533
No 301
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=1.9e-06 Score=78.22 Aligned_cols=130 Identities=17% Similarity=0.167 Sum_probs=81.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc-c--------------ccceEEEEe---cCCccc----------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-Q--------------FVPRIWVCT---MSGQKT---------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-~--------------F~~~~~v~~---v~~~~~---------------- 107 (398)
.-.+++|.|++|+|||||++.+........ . ...+.++.. +-...+
T Consensus 24 ~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~ 103 (235)
T cd03299 24 RGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDK 103 (235)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCH
Confidence 456899999999999999999976421110 0 001111110 000000
Q ss_pred --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
......++++.+++... .......+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+.+|
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~ti 183 (235)
T cd03299 104 KEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV 183 (235)
T ss_pred HHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 11123455666776532 2223357899999999999999999999999998 4444444433332 2237899
Q ss_pred EEEeCChHHHHHh
Q 015891 179 IITSRNEKLTTEM 191 (398)
Q Consensus 179 IiTTR~~~v~~~~ 191 (398)
|++||+...+...
T Consensus 184 li~tH~~~~~~~~ 196 (235)
T cd03299 184 LHVTHDFEEAWAL 196 (235)
T ss_pred EEEecCHHHHHHh
Confidence 9999999876654
No 302
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=3e-06 Score=82.34 Aligned_cols=182 Identities=15% Similarity=0.214 Sum_probs=101.0
Q ss_pred CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC------CccccceEEEEecCCcccHHH
Q 015891 37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV------KTQFVPRIWVCTMSGQKTAES 110 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~------~~~F~~~~~v~~v~~~~~~~~ 110 (398)
-++++|.+..++.+...+.. ..-...+.++|++|+||||+|+.+.+...- ...|...+.-.+....... .
T Consensus 16 ~~~iig~~~~~~~l~~~i~~---~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 91 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIEN---NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-D 91 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-H
Confidence 36789999999999999964 234568899999999999999999776211 0112111110000010101 1
Q ss_pred HHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcCC-CCCCEEEEEe-CChH
Q 015891 111 IVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLPR-GYGERLIITS-RNEK 186 (398)
Q Consensus 111 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~~-~~gs~IIiTT-R~~~ 186 (398)
.+..++..+... -+.+++-++++||++. ....+.+...+.. ...+.+|++| +...
T Consensus 92 ~i~~l~~~~~~~---------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~k 150 (367)
T PRK14970 92 DIRNLIDQVRIP---------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHK 150 (367)
T ss_pred HHHHHHHHHhhc---------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCccc
Confidence 122222221100 0123456899999983 3344555444532 2244555555 3333
Q ss_pred HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 187 LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 187 v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
+...+......+++.+++. ++....+...+...+...++ +.+..|++.++|.+..+.
T Consensus 151 l~~~l~sr~~~v~~~~~~~-~~l~~~l~~~~~~~g~~i~~---~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 151 IIPTILSRCQIFDFKRITI-KDIKEHLAGIAVKEGIKFED---DALHIIAQKADGALRDAL 207 (367)
T ss_pred CCHHHHhcceeEecCCccH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHhCCCCHHHHH
Confidence 3333334456899999998 55666666544333332222 366777888887666543
No 303
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=1.5e-06 Score=81.41 Aligned_cols=64 Identities=11% Similarity=0.146 Sum_probs=48.6
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~ 192 (398)
...+.+++++..+.+.+..++-+||||++. |....+.+...+. ...+..||++||+...+..++
T Consensus 181 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~ 248 (286)
T PRK14275 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVS 248 (286)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC
Confidence 348899999999999999999999999998 4444444444443 123578999999988876643
No 304
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.52 E-value=2.1e-06 Score=83.23 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=49.1
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHh
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~ 191 (398)
..+.+++++..+.+++-+.|+|+|||++. |.+-...+...+. ...|+.+|++||...++..+
T Consensus 472 ~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 37899999999999999999999999998 3333344444443 45789999999999887764
No 305
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2.1e-06 Score=87.03 Aligned_cols=192 Identities=15% Similarity=0.175 Sum_probs=104.1
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
++++|-+..++.|...+.. ..-...+.++|+.|+||||+|+.+++...-...... ..+..-...+.+..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~---~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~--------~pCg~C~sC~~i~~ 84 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQE---NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG--------EPCNTCEQCRKVTQ 84 (624)
T ss_pred HHhcCCHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC--------CCCcccHHHHHHhc
Confidence 5789999888889988864 123567889999999999999999887221110000 00000001111111
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCCC--HHHHHHHHhHcCC-CCCCEEEEEeCC-hHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFED--MEVCKHLSKVLPR-GYGERLIITSRN-EKLT 188 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~-~~gs~IIiTTR~-~~v~ 188 (398)
.................+..+. +...+ ..+..++|+|+++. ....+.|...+.. .....+|++|.+ ..+.
T Consensus 85 g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 1000000000000112222222 22222 34567999999984 4555666666642 234556665555 4455
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED 245 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 245 (398)
..+......+++.+++. ++....+.+.+...+...++ +.++.|++.++|-...
T Consensus 164 ~TI~SRcq~i~F~pLs~-~eL~~~L~~il~~egi~id~---eal~lIA~~s~GdlR~ 216 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSE-AGLEAHLTKVLGREGVDYDP---AAVRLIARRAAGSVRD 216 (624)
T ss_pred HHHHhhhhccccCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHH
Confidence 44444556889999998 55666666644333322222 3566777778876643
No 306
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1.3e-06 Score=80.53 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=48.3
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~ 192 (398)
...+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+...+..++
T Consensus 153 ~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~ 220 (258)
T PRK14268 153 LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARIS 220 (258)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhC
Confidence 348899999999999999999999999998 4444444444332 123688999999998776543
No 307
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.51 E-value=9.3e-07 Score=79.23 Aligned_cols=158 Identities=12% Similarity=0.064 Sum_probs=95.4
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHcCC-------CCCc--ccc----------------ceEEEEecC--Ccc------
Q 015891 60 DDQFRAIGVVGVAGVGKTTLCQRIFHKP-------DVKT--QFV----------------PRIWVCTMS--GQK------ 106 (398)
Q Consensus 60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~~-------~~~~--~F~----------------~~~~v~~v~--~~~------ 106 (398)
-+.-.+++++|++|.||||+.+.+-.-. ++.. .|+ ...|++ .. ...
T Consensus 47 IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd-lp~~ds~~v~~~I 125 (325)
T COG4586 47 IPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD-LPALDSLEVLKLI 125 (325)
T ss_pred cCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeee-chhhhhHHHHHHH
Confidence 3567899999999999999999994321 0111 111 123554 22 111
Q ss_pred ------cHHHHHHHHHHHcCCCCCCCC-CcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CC
Q 015891 107 ------TAESIVKRILKRLGVDDGTTN-SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RG 173 (398)
Q Consensus 107 ------~~~~~~~~il~~l~~~~~~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~ 173 (398)
...+-+..+.+-|+++..-.. --..+.+++.+..+...|-+++-++.||+++ |......++.++. ..
T Consensus 126 y~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~ 205 (325)
T COG4586 126 YEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEE 205 (325)
T ss_pred HhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHh
Confidence 122333444555555532111 1226889999999999999999999999998 4433334444443 45
Q ss_pred CCCEEEEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHHhhhC
Q 015891 174 YGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVR 218 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~ 218 (398)
.+++|+.|||+-+=...++.....+.-+.+-.+.....|-.+..+
T Consensus 206 ~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~ 250 (325)
T COG4586 206 RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGP 250 (325)
T ss_pred hCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCC
Confidence 699999999996544444455455555566553444444444333
No 308
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.51 E-value=1e-06 Score=81.78 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=79.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE-----------------ecCCccc----------------H
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC-----------------TMSGQKT----------------A 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~-----------------~v~~~~~----------------~ 108 (398)
.-.+++|+|++|+|||||++.++.-... .+.+++. ++.+... .
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~~----~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~ 104 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLLNT----EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWS 104 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcCC----CcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCC
Confidence 4568999999999999999999765211 1222221 1111110 1
Q ss_pred HHHHHHHHHHcCCCCCCC------------CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-C
Q 015891 109 ESIVKRILKRLGVDDGTT------------NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-R 172 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~~~------------~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~ 172 (398)
...+...++.+++..... .....+.++.++..+.+.+..++-++++|++. |......+...+. .
T Consensus 105 ~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~ 184 (275)
T cd03289 105 DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA 184 (275)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 112334445555432100 01127889999999999999999999999998 4444444444443 2
Q ss_pred CCCCEEEEEeCChHHHHH
Q 015891 173 GYGERLIITSRNEKLTTE 190 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~ 190 (398)
..+++||++||+.+....
T Consensus 185 ~~~~tii~isH~~~~i~~ 202 (275)
T cd03289 185 FADCTVILSEHRIEAMLE 202 (275)
T ss_pred cCCCEEEEEECCHHHHHh
Confidence 347899999999876654
No 309
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.51 E-value=1.9e-07 Score=88.41 Aligned_cols=223 Identities=18% Similarity=0.191 Sum_probs=142.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL 141 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l 141 (398)
..+.+.++|+||+||||++-++.. +...|....|+.+..+-.+.....-.+...+++.. ..++.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~--------~~g~~~~~~~ 81 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHV--------QPGDSAVDTL 81 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccc--------ccchHHHHHH
Confidence 478899999999999999999988 45667776665547766777777777777787764 2334445567
Q ss_pred HHHHhCCCcEEEecCCCCH-HHHHHHH-hHcCCCCCCEEEEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHHh-hh-
Q 015891 142 QQQLIGKRYLIVLDDFEDM-EVCKHLS-KVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYRD-SV- 217 (398)
Q Consensus 142 ~~~l~~k~~LlVLDdv~~~-~~~~~l~-~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~-~~- 217 (398)
.....+++.++++||..+. +....+. ..+...+.-+|+.|+|+.-.. .....+.+.+|+..+.+-.+|.. +.
T Consensus 82 ~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~----~ge~~~~~~~L~~~d~a~~lf~~ra~~ 157 (414)
T COG3903 82 VRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV----AGEVHRRVPSLSLFDEAIELFVCRAVL 157 (414)
T ss_pred HHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc----cccccccCCccccCCchhHHHHHHHHH
Confidence 7888899999999999865 2222222 233355677889999976432 34667889999887656555543 22
Q ss_pred CCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChH-H-HHHHhhhhcCCchhHHhHHHHHhhhccCCCCCCcchhhhh
Q 015891 218 RDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQ-L-VEELGKLQGENTKLMERKRSILRDSANLPNSKQLEEEVEK 295 (398)
Q Consensus 218 ~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lp-l-~~~lg~~l~~~~~~~~~w~~~L~~~~~lp~~~~~~~~~~~ 295 (398)
-...............+|.++..|.|++|...++... + .+.+.+.+++. +...... ...-......... .
T Consensus 158 ~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~dr---f~ll~~~-~r~a~~~~qtl~a----s 229 (414)
T COG3903 158 VALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDR---FRLLTGG-ARLAVLRQQTLRA----S 229 (414)
T ss_pred hccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhH---HHHHhcc-cccchhHHHhccc----h
Confidence 1111122222234788999999999999987766543 3 56666666432 1111111 1111122222233 6
Q ss_pred hHHHHHHHHH-hh
Q 015891 296 LQGQITKMIE-EK 307 (398)
Q Consensus 296 l~~sy~~l~~-e~ 307 (398)
+..||--|.. |.
T Consensus 230 l~ws~~lLtgwe~ 242 (414)
T COG3903 230 LDWSYALLTGWER 242 (414)
T ss_pred hhhhhHhhhhHHH
Confidence 7788887776 54
No 310
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.51 E-value=2.7e-06 Score=76.80 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=50.9
Q ss_pred CcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 128 SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 128 ~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
....+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+...... .++++.+
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~---~d~i~~l 221 (226)
T cd03248 148 GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER---ADQILVL 221 (226)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh---CCEEEEe
Confidence 3447899999999999999999999999999 4444444444443 1225789999999887743 3455555
No 311
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.50 E-value=2.4e-06 Score=77.62 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=47.4
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHH
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~ 190 (398)
...+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+.+.+..
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 202 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN 202 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh
Confidence 458899999999999999999999999999 4444444443332 1237889999999987753
No 312
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.50 E-value=2.4e-07 Score=81.88 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH---cCCCCCCEEEEE
Q 015891 109 ESIVKRILKRLGVDDGTTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV---LPRGYGERLIIT 181 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~---l~~~~gs~IIiT 181 (398)
.+....+++.+++........ +.+.+++.+-.++++|..++-||+||++- +....+.+... ++...|..|+++
T Consensus 127 ~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillI 206 (250)
T COG0411 127 RERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLI 206 (250)
T ss_pred HHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344567788888877544433 37889999999999999999999999998 33333333333 334467899999
Q ss_pred eCChHHHHHhcCCCceEEc
Q 015891 182 SRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 182 TR~~~v~~~~~~~~~~~~l 200 (398)
-|+.++...++ ++++.+
T Consensus 207 EHdM~~Vm~l~--dri~Vl 223 (250)
T COG0411 207 EHDMKLVMGLA--DRIVVL 223 (250)
T ss_pred EeccHHHhhhc--cEEEec
Confidence 99999887764 344444
No 313
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.9e-06 Score=79.07 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=48.4
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~ 192 (398)
...+.+++++..+.+++..++-+++||++. |....+.+...+. ...+..||++||+......++
T Consensus 146 ~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~ 213 (251)
T PRK14251 146 QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRIS 213 (251)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhc
Confidence 347889999999999999999999999998 4444444444443 123578999999998766543
No 314
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.9e-06 Score=79.49 Aligned_cols=86 Identities=7% Similarity=0.039 Sum_probs=56.8
Q ss_pred HHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeC
Q 015891 113 KRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSR 183 (398)
Q Consensus 113 ~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR 183 (398)
..+++.+++.. ........+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH 205 (258)
T PRK14241 126 EKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTH 205 (258)
T ss_pred HHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 34555566521 12223448899999999999999999999999998 4443334433332 123578999999
Q ss_pred ChHHHHHhcCCCceEEc
Q 015891 184 NEKLTTEMVGEENLHQL 200 (398)
Q Consensus 184 ~~~v~~~~~~~~~~~~l 200 (398)
+...+..++ ++++.+
T Consensus 206 ~~~~~~~~~--d~i~~l 220 (258)
T PRK14241 206 NMQQAARVS--DQTAFF 220 (258)
T ss_pred CHHHHHHhC--CEEEEE
Confidence 988766543 344444
No 315
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.7e-06 Score=79.47 Aligned_cols=64 Identities=11% Similarity=0.091 Sum_probs=47.8
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~ 192 (398)
...+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+......++
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~ 215 (253)
T PRK14267 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVS 215 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhC
Confidence 347889999999999999999999999998 4444444443332 123578999999988766543
No 316
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.50 E-value=1.7e-06 Score=78.76 Aligned_cols=187 Identities=15% Similarity=0.190 Sum_probs=107.3
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
++++|.+..+..|...+.. ........+||+|.|||+.|++++....-.+.|.+++.=.+++...... +.+.=
T Consensus 36 de~~gQe~vV~~L~~a~~~----~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K-- 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR----RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK-- 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhh----cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh--
Confidence 6789999999999998864 5678899999999999999999987732234455543221133221111 00000
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHH--hCCC-cEEEecCCCCH--HHHHHHHhHcC-CCCCCEEEEEeCC-hHHHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL--IGKR-YLIVLDDFEDM--EVCKHLSKVLP-RGYGERLIITSRN-EKLTTE 190 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVLDdv~~~--~~~~~l~~~l~-~~~gs~IIiTTR~-~~v~~~ 190 (398)
..+.........+.. ..++ -++|||+++.. +.|..|+..+. ....++.|+++.. ..+...
T Consensus 109 -------------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 109 -------------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred -------------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 000000000000000 0123 58999999954 66777777765 3556666655544 333333
Q ss_pred hcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 191 MVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 191 ~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
+......|..++|.+++ .-.-++.....++...+. +..+.|++.++|--...++
T Consensus 176 i~SRC~KfrFk~L~d~~-iv~rL~~Ia~~E~v~~d~---~al~~I~~~S~GdLR~Ait 229 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDED-IVDRLEKIASKEGVDIDD---DALKLIAKISDGDLRRAIT 229 (346)
T ss_pred HHhhHHHhcCCCcchHH-HHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCcHHHHHH
Confidence 33445678999999844 444344433333333333 3677888888887655444
No 317
>PRK06620 hypothetical protein; Validated
Probab=98.49 E-value=4.6e-06 Score=74.45 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=78.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHH
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQ 143 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 143 (398)
..+.|+|++|+|||+|++.+++.. .. .++. .... . . .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~---~~~~--------------~---------~----------~ 81 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIK---DIFF--------------N---------E----------E 81 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcc---hhhh--------------c---------h----------h
Confidence 679999999999999999988762 11 1111 0000 0 0 0
Q ss_pred HHhCCCcEEEecCCCCHHHHHHHHhHcC--CCCCCEEEEEeCChH-------HHHHhcCCCceEEcCCCCChhHHHHHHH
Q 015891 144 QLIGKRYLIVLDDFEDMEVCKHLSKVLP--RGYGERLIITSRNEK-------LTTEMVGEENLHQLQPLSDQESCWLIYR 214 (398)
Q Consensus 144 ~l~~k~~LlVLDdv~~~~~~~~l~~~l~--~~~gs~IIiTTR~~~-------v~~~~~~~~~~~~l~~L~~~e~~~~l~~ 214 (398)
.. ....++++||++.... ..+...+. ...|..+|+|++... +.+.+ ....++++++++. +....+++
T Consensus 82 ~~-~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl-~~gl~~~l~~pd~-~~~~~~l~ 157 (214)
T PRK06620 82 IL-EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRI-KSVLSILLNSPDD-ELIKILIF 157 (214)
T ss_pred HH-hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHH-hCCceEeeCCCCH-HHHHHHHH
Confidence 01 2345889999985432 23333333 245778999987432 22333 3355899999998 66777777
Q ss_pred hhhCCCCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891 215 DSVRDKDAQLKSQARKDLEEKLEKLQGQNEDA 246 (398)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 246 (398)
+.+...+...++ ++..-|++.+.|--..+
T Consensus 158 k~~~~~~l~l~~---ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 158 KHFSISSVTISR---QIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHHHHcCCCCCH---HHHHHHHHHccCCHHHH
Confidence 765433333333 25555666665555443
No 318
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.49 E-value=3e-07 Score=87.53 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=58.4
Q ss_pred HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~ 184 (398)
...+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4556777777542 2233458999999999999999999999999999 4444444444332 2247889999999
Q ss_pred hHHHHHhcC
Q 015891 185 EKLTTEMVG 193 (398)
Q Consensus 185 ~~v~~~~~~ 193 (398)
...+..+++
T Consensus 161 ~~e~~~~~d 169 (325)
T TIGR01187 161 QEEAMTMSD 169 (325)
T ss_pred HHHHHHhCC
Confidence 887766533
No 319
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=2.3e-06 Score=78.42 Aligned_cols=80 Identities=11% Similarity=0.132 Sum_probs=54.9
Q ss_pred HHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeC
Q 015891 113 KRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSR 183 (398)
Q Consensus 113 ~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR 183 (398)
..+++.+++.. ........+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||
T Consensus 124 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH 203 (250)
T PRK14245 124 EETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 34556666532 12223358999999999999999999999999999 4444444443432 123678999999
Q ss_pred ChHHHHHhc
Q 015891 184 NEKLTTEMV 192 (398)
Q Consensus 184 ~~~v~~~~~ 192 (398)
+...+..++
T Consensus 204 ~~~~~~~~~ 212 (250)
T PRK14245 204 NMQQAARVS 212 (250)
T ss_pred CHHHHHhhC
Confidence 988765543
No 320
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.49 E-value=8.9e-07 Score=81.72 Aligned_cols=64 Identities=9% Similarity=0.108 Sum_probs=48.1
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~ 192 (398)
...+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+...+..++
T Consensus 155 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~ 222 (260)
T PRK10744 155 YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCS 222 (260)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC
Confidence 447899999999999999999999999999 4444444444432 123578999999988776543
No 321
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=2.4e-06 Score=78.36 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=54.9
Q ss_pred HHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCC
Q 015891 114 RILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRN 184 (398)
Q Consensus 114 ~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~ 184 (398)
.+++.+++.. ........+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+
T Consensus 128 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~ 207 (251)
T PRK14244 128 KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHS 207 (251)
T ss_pred HHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4566666643 11223347899999999999999999999999998 4444444444432 1236889999999
Q ss_pred hHHHHHhc
Q 015891 185 EKLTTEMV 192 (398)
Q Consensus 185 ~~v~~~~~ 192 (398)
...+..++
T Consensus 208 ~~~~~~~~ 215 (251)
T PRK14244 208 MKQAKKVS 215 (251)
T ss_pred HHHHHhhc
Confidence 88776543
No 322
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.49 E-value=5.9e-07 Score=80.71 Aligned_cols=128 Identities=16% Similarity=0.219 Sum_probs=81.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cccce--------------EEEEecCCc-------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFVPR--------------IWVCTMSGQ------------------- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~~~--------------~~v~~v~~~------------------- 105 (398)
.-.+++|.|++|+|||||++.+....... . .|+.. ..+.++.+.
T Consensus 30 ~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~ 109 (220)
T TIGR02982 30 PGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALEL 109 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHh
Confidence 45799999999999999999997541100 0 00000 001111110
Q ss_pred ---cc---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 106 ---KT---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 106 ---~~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
.. .......+++.+++... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. .
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~ 189 (220)
T TIGR02982 110 QPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 00 11234566777777542 2233458899999999999999999999999999 4444444444442 2
Q ss_pred CCCCEEEEEeCChHHHH
Q 015891 173 GYGERLIITSRNEKLTT 189 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~ 189 (398)
..+..||++||+.++..
T Consensus 190 ~~~~tii~~sh~~~~~~ 206 (220)
T TIGR02982 190 EQGCTILIVTHDNRILD 206 (220)
T ss_pred HcCCEEEEEeCCHHHHh
Confidence 24789999999998653
No 323
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=2.3e-06 Score=79.52 Aligned_cols=71 Identities=8% Similarity=0.052 Sum_probs=52.8
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
...+.++.++..+.+.+..++-++|||++. |....+.+...+. ...+..||++||+......++ ++++.+.
T Consensus 160 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~--d~i~~l~ 234 (274)
T PRK14265 160 TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVA--DWTAFFN 234 (274)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC--CEEEEEe
Confidence 347889999999999999999999999998 4444444444443 223578999999998877653 4555553
No 324
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.49 E-value=4.8e-06 Score=74.04 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=50.3
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..+|++||+...+..+ ++++.+
T Consensus 124 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~---d~v~~l 196 (207)
T cd03369 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDY---DKILVM 196 (207)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC---CEEEEE
Confidence 347889999999999999999999999999 4444444444443 22478899999998876542 444444
No 325
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=3.7e-06 Score=76.00 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=50.0
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+...... .++++.+
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~---~d~i~~l 210 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN---ADKILVL 210 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh---CCEEEEE
Confidence 347889999999999999999999999999 4444443433332 1247789999999887654 2444444
No 326
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=2.1e-06 Score=80.04 Aligned_cols=129 Identities=15% Similarity=0.086 Sum_probs=80.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cc-------------cc-eEEEEecCC----cccH------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QF-------------VP-RIWVCTMSG----QKTA------------ 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F-------------~~-~~~v~~v~~----~~~~------------ 108 (398)
.-.+++|+|++|+|||||++.+..-... .. .| .. +.++..-.. ..+.
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (277)
T PRK13642 32 KGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQG 111 (277)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcC
Confidence 4568999999999999999999754110 00 00 00 111110000 0000
Q ss_pred ------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891 109 ------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG 175 (398)
Q Consensus 109 ------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g 175 (398)
.+....+++.+++... .......+.+++++..+.+.+..++-++++|++. |....+.+...+. ...|
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g 191 (277)
T PRK13642 112 IPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ 191 (277)
T ss_pred CCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 1122445555565432 2223458999999999999999999999999998 4444444444443 2237
Q ss_pred CEEEEEeCChHHHHH
Q 015891 176 ERLIITSRNEKLTTE 190 (398)
Q Consensus 176 s~IIiTTR~~~v~~~ 190 (398)
..||++||+...+..
T Consensus 192 ~tiil~sH~~~~~~~ 206 (277)
T PRK13642 192 LTVLSITHDLDEAAS 206 (277)
T ss_pred CEEEEEeCCHHHHHh
Confidence 899999999888753
No 327
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=3.2e-06 Score=79.88 Aligned_cols=64 Identities=9% Similarity=0.113 Sum_probs=48.2
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~ 192 (398)
...+.+++++..+.+.|..++-+|+||++. |......+...+. ...+..||++||+...+..++
T Consensus 199 ~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~ 266 (305)
T PRK14264 199 LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARIS 266 (305)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhc
Confidence 447899999999999999999999999999 4444444444443 122467999999998876653
No 328
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.48 E-value=2.3e-06 Score=79.33 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=46.9
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~ 191 (398)
...+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+......+
T Consensus 162 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~ 228 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARA 228 (267)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 457899999999999999999999999999 4433333333332 12357899999998776554
No 329
>PLN03073 ABC transporter F family; Provisional
Probab=98.48 E-value=1.5e-06 Score=90.90 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=50.3
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...+++++++..|.+.|..++-+|+||++. |......+...+.. .+..||++||+...+..+++
T Consensus 343 ~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~-~~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 343 KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK-WPKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCC
Confidence 458999999999999999999999999999 44555555555532 25689999999988877543
No 330
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=3.1e-06 Score=79.13 Aligned_cols=131 Identities=15% Similarity=0.220 Sum_probs=80.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCC------CCcc--ccce-------------EEEEecCCcc-----cH------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD------VKTQ--FVPR-------------IWVCTMSGQK-----TA------ 108 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~------~~~~--F~~~-------------~~v~~v~~~~-----~~------ 108 (398)
..-.+++|+|++|+|||||++.+..-.. .... |... .-+.++.+.. +.
T Consensus 63 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~ 142 (285)
T PRK14254 63 PENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAY 142 (285)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHH
Confidence 3456899999999999999999986421 0110 1000 0011111110 11
Q ss_pred -----------HHHHHHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH
Q 015891 109 -----------ESIVKRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV 169 (398)
Q Consensus 109 -----------~~~~~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~ 169 (398)
......+++.+++.. ........+.+++++..+.+.+..++-+|+||++. |....+.+...
T Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~ 222 (285)
T PRK14254 143 GLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL 222 (285)
T ss_pred HHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 112234555565531 12233458999999999999999999999999999 44444444444
Q ss_pred cC-CCCCCEEEEEeCChHHHHHh
Q 015891 170 LP-RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 170 l~-~~~gs~IIiTTR~~~v~~~~ 191 (398)
+. ...+..||++||+.+.+..+
T Consensus 223 L~~~~~~~tiii~tH~~~~i~~~ 245 (285)
T PRK14254 223 IEELAEEYTVVIVTHNMQQAARI 245 (285)
T ss_pred HHHHhcCCEEEEEeCCHHHHHhh
Confidence 43 11236899999998877664
No 331
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=3.1e-06 Score=86.89 Aligned_cols=196 Identities=15% Similarity=0.144 Sum_probs=108.3
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
+++||.+..++.|..++.. ..-...+.++|+.|+||||+|+.+++. +...... . -...+..-.....+..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~---~~i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~~~----~-~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAE---GRVAHAYLFTGPRGVGKTSTARILAKA--VNCTTND----P-KGRPCGTCEMCRAIAE 85 (585)
T ss_pred HHhcCCHHHHHHHHHHHHh---CCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCC----C-CCCCCccCHHHHHHhc
Confidence 6789999999999998864 223456789999999999999999876 2111000 0 0001111112222222
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCC-hHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRN-EKLT 188 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~-~~v~ 188 (398)
..+..............+..+..+ ..+ ..++.++|+|+++ +.+..+.|...+.. ...+.+|+++.+ ..+.
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii-~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREII-ERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHH-HHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 111110000000112223322222 222 2356799999998 34555666666543 235566665544 3444
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
..+......+++.+++. ++....+.+.+...+...++ +.+..|++.++|.+..+..
T Consensus 165 ~tI~SR~~~i~f~~l~~-~el~~~L~~~a~~egl~i~~---eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 165 ATILSRCQRFDFHRHSV-ADMAAHLRKIAAAEGINLEP---GALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHHhccceeeCCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 44445567889999988 55666666554433332222 3677888899998876553
No 332
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.48 E-value=2.3e-06 Score=77.28 Aligned_cols=131 Identities=19% Similarity=0.184 Sum_probs=77.4
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCC----CCcc--ccc--------eEEEEecCCcc------cHHH----------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD----VKTQ--FVP--------RIWVCTMSGQK------TAES---------- 110 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~----~~~~--F~~--------~~~v~~v~~~~------~~~~---------- 110 (398)
..-.+++|+|++|+|||||++.+..-.. .... ++. ...+.++.+.. +..+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 110 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRL 110 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhc
Confidence 3457899999999999999999976522 1110 100 00011111110 1100
Q ss_pred -----------HHHH-HHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--C
Q 015891 111 -----------IVKR-ILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--R 172 (398)
Q Consensus 111 -----------~~~~-il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~ 172 (398)
.... ++..+++.... ......+.++.++..+.+.+...+-++++|++. |......+...+. .
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~ 190 (226)
T cd03234 111 PRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLA 190 (226)
T ss_pred ccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 1112 44445544321 222347889999999999999999999999998 4433334433332 1
Q ss_pred CCCCEEEEEeCCh-HHHHHh
Q 015891 173 GYGERLIITSRNE-KLTTEM 191 (398)
Q Consensus 173 ~~gs~IIiTTR~~-~v~~~~ 191 (398)
..+..||+|||+. ..+..+
T Consensus 191 ~~~~tiii~sh~~~~~~~~~ 210 (226)
T cd03234 191 RRNRIVILTIHQPRSDLFRL 210 (226)
T ss_pred HCCCEEEEEecCCCHHHHHh
Confidence 2377999999996 344433
No 333
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=2.8e-06 Score=78.18 Aligned_cols=86 Identities=14% Similarity=0.193 Sum_probs=58.2
Q ss_pred HHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeC
Q 015891 113 KRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSR 183 (398)
Q Consensus 113 ~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR 183 (398)
..+++.+++.. ........+.+++++..+.+.+..++-+++||++. |....+.+...+. ...++.||++||
T Consensus 131 ~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh 210 (257)
T PRK14246 131 EECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSH 210 (257)
T ss_pred HHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEEC
Confidence 34455566532 12233347889999999999999999999999999 4444444444443 123589999999
Q ss_pred ChHHHHHhcCCCceEEc
Q 015891 184 NEKLTTEMVGEENLHQL 200 (398)
Q Consensus 184 ~~~v~~~~~~~~~~~~l 200 (398)
+...+..++ ++++.+
T Consensus 211 ~~~~~~~~~--d~v~~l 225 (257)
T PRK14246 211 NPQQVARVA--DYVAFL 225 (257)
T ss_pred CHHHHHHhC--CEEEEE
Confidence 998876643 344444
No 334
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.48 E-value=2.2e-06 Score=87.28 Aligned_cols=80 Identities=16% Similarity=0.270 Sum_probs=57.2
Q ss_pred HHHHHHcCCCCC----CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEe
Q 015891 113 KRILKRLGVDDG----TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITS 182 (398)
Q Consensus 113 ~~il~~l~~~~~----~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTT 182 (398)
.++++.+++... .......+++++++..+++.+..++-+|+||++. |....+.+...+. ...|..||++|
T Consensus 135 ~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vt 214 (529)
T PRK15134 135 LNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFIT 214 (529)
T ss_pred HHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 455666777531 2234458999999999999999999999999999 4444444443332 22367899999
Q ss_pred CChHHHHHhc
Q 015891 183 RNEKLTTEMV 192 (398)
Q Consensus 183 R~~~v~~~~~ 192 (398)
|+.+.+..++
T Consensus 215 Hd~~~~~~~~ 224 (529)
T PRK15134 215 HNLSIVRKLA 224 (529)
T ss_pred CcHHHHHHhc
Confidence 9988776643
No 335
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.48 E-value=3.4e-06 Score=78.24 Aligned_cols=80 Identities=13% Similarity=0.121 Sum_probs=55.4
Q ss_pred HHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHh---------CCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891 112 VKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLI---------GKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG 175 (398)
Q Consensus 112 ~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~---------~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g 175 (398)
...+++.+++... .......+.++.++..+.+.+. .++-+++||++. |....+.+...+. ...+
T Consensus 126 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~ 205 (272)
T PRK13547 126 AWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN 205 (272)
T ss_pred HHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 3455666666532 2223448899999999999998 489999999998 4444444444443 2237
Q ss_pred CEEEEEeCChHHHHHh
Q 015891 176 ERLIITSRNEKLTTEM 191 (398)
Q Consensus 176 s~IIiTTR~~~v~~~~ 191 (398)
..||++||+......+
T Consensus 206 ~tviiisH~~~~~~~~ 221 (272)
T PRK13547 206 LGVLAIVHDPNLAARH 221 (272)
T ss_pred CEEEEEECCHHHHHHh
Confidence 8899999998876554
No 336
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=2.9e-06 Score=87.32 Aligned_cols=190 Identities=12% Similarity=0.156 Sum_probs=104.6
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
.+++|.+..++.|...+.. ..-...+.++|+.|+||||+|+.+++...-..... .... ......
T Consensus 18 ~dIiGQe~~v~~L~~aI~~---~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~-------~~~p--C~~C~~---- 81 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKS---NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD-------LLEP--CQECIE---- 81 (725)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC-------CCCc--hhHHHH----
Confidence 5789999999999999964 23456778999999999999999987621111000 0000 000000
Q ss_pred HcCCCCCC--CCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCC--CHHHHHHHHhHcCCC-CCCEEE-EEeCChH
Q 015891 118 RLGVDDGT--TNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFE--DMEVCKHLSKVLPRG-YGERLI-ITSRNEK 186 (398)
Q Consensus 118 ~l~~~~~~--~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~-~gs~II-iTTR~~~ 186 (398)
..+..... .......+.+..+. +...+ .+++.++|+|+++ +......|...+-.- ..+.+| +|++...
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IRe-Lie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRE-LIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 01110000 00000112222222 22222 2456799999998 445566666666422 244444 4544455
Q ss_pred HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 187 LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 187 v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
+...+......+++.+++. ++....+...+...+....+ +.+..|++.++|-+..+..
T Consensus 161 Ll~TI~SRcq~ieF~~L~~-eeI~~~L~~il~kegI~id~---eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISE-DEIVSRLEFILEKENISYEK---NALKLIAKLSSGSLRDALS 218 (725)
T ss_pred hhHHHHhhceeEEccCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 5555545567899999998 55665665544332222222 2566788888887765443
No 337
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.47 E-value=2.9e-06 Score=78.66 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=47.8
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~ 192 (398)
...+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+...+..++
T Consensus 163 ~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~ 230 (268)
T PRK14248 163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVS 230 (268)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhC
Confidence 348899999999999999999999999999 4444444444332 122578999999988766543
No 338
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=3.2e-06 Score=76.65 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=50.6
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+...... .++++.+
T Consensus 137 ~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~---~d~v~~l 209 (234)
T cd03251 137 VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN---ADRIVVL 209 (234)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh---CCEEEEe
Confidence 347889999999999999999999999998 4444444444443 2246789999999887754 2444444
No 339
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.47 E-value=2.9e-06 Score=78.95 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=48.0
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~ 192 (398)
...+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+...+..++
T Consensus 162 ~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~ 229 (276)
T PRK14271 162 FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARIS 229 (276)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 347899999999999999999999999999 4444444444433 122478999999998766643
No 340
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=4.1e-06 Score=83.90 Aligned_cols=194 Identities=15% Similarity=0.194 Sum_probs=108.6
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC--CccccceEEEEecCCcccHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV--KTQFVPRIWVCTMSGQKTAESIVKRI 115 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~--~~~F~~~~~v~~v~~~~~~~~~~~~i 115 (398)
++++|-+...+.|...+.. ..-...+.++|+.|+||||+|+.+++...- ...+.. +..+ .....+
T Consensus 14 deiiGqe~v~~~L~~~I~~---grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~p-C~~C---------~~C~~~ 80 (535)
T PRK08451 14 DELIGQESVSKTLSLALDN---NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTP-CDTC---------IQCQSA 80 (535)
T ss_pred HHccCcHHHHHHHHHHHHc---CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCC-Cccc---------HHHHHH
Confidence 6789999999999999864 234556789999999999999988765210 011100 0000 000000
Q ss_pred HHHcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcC-CCCCCEEEEEeCCh-HH
Q 015891 116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLP-RGYGERLIITSRNE-KL 187 (398)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~-~~~gs~IIiTTR~~-~v 187 (398)
.................+.+..+..+... ..++.-++|+|+++ +.+..+.|...+. ..+.+++|++|.+. .+
T Consensus 81 ~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL 160 (535)
T PRK08451 81 LENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKL 160 (535)
T ss_pred hhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhC
Confidence 00000000000000011233333333221 11345699999998 4456666666664 23456777777653 33
Q ss_pred HHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 188 TTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 188 ~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
...+......+++.+++. ++....+.+.+...+....+ +.+..|++.++|-+..+..
T Consensus 161 ~~tI~SRc~~~~F~~Ls~-~ei~~~L~~Il~~EGi~i~~---~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 161 PATILSRTQHFRFKQIPQ-NSIISHLKTILEKEGVSYEP---EALEILARSGNGSLRDTLT 217 (535)
T ss_pred chHHHhhceeEEcCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHH
Confidence 333444567899999998 55666666655444333222 3667888889998866544
No 341
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.46 E-value=2.3e-05 Score=78.12 Aligned_cols=157 Identities=14% Similarity=0.206 Sum_probs=90.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc--eEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP--RIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDY 139 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~ 139 (398)
....+.|+|++|+|||+|++++++. ....+.. ++++. ...+...+...+.. .. ..
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~-------~~~~~~~~~~~~~~----------~~----~~ 203 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVT-------SEKFTNDFVNALRN----------NT----ME 203 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEE-------HHHHHHHHHHHHHc----------Cc----HH
Confidence 3467899999999999999999987 4443322 33444 22233334433321 11 12
Q ss_pred HHHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeCChH---------HHHHhcCCCceEEcCCCC
Q 015891 140 VLQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSRNEK---------LTTEMVGEENLHQLQPLS 204 (398)
Q Consensus 140 ~l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR~~~---------v~~~~~~~~~~~~l~~L~ 204 (398)
.+...+. +.-+|+|||++.. ...+.+...+. ...+..||+||.... +...+ .....+++++.+
T Consensus 204 ~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl-~~gl~v~i~~pd 281 (450)
T PRK00149 204 EFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRF-EWGLTVDIEPPD 281 (450)
T ss_pred HHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHh-cCCeeEEecCCC
Confidence 2333333 4669999999732 22233333332 223556777776431 12222 234578999999
Q ss_pred ChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 205 DQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 205 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
. +....++++.+...+...++ +...-|++.+.|....+.
T Consensus 282 ~-~~r~~il~~~~~~~~~~l~~---e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 282 L-ETRIAILKKKAEEEGIDLPD---EVLEFIAKNITSNVRELE 320 (450)
T ss_pred H-HHHHHHHHHHHHHcCCCCCH---HHHHHHHcCcCCCHHHHH
Confidence 8 66777777755433333333 367778888887776544
No 342
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.8e-06 Score=82.22 Aligned_cols=66 Identities=8% Similarity=0.059 Sum_probs=48.9
Q ss_pred CcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcC
Q 015891 128 SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 128 ~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
....+.+++++..+++++..++-+|+|||+. |......+...+. ...+++||++||+.+.+..+++
T Consensus 223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~D 292 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISD 292 (329)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 3448899999999999999999999999999 4433333433333 2236889999999888776433
No 343
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.46 E-value=2.6e-06 Score=78.26 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=47.0
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~ 191 (398)
...+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+......+
T Consensus 147 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 213 (252)
T PRK14239 147 LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRI 213 (252)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHh
Confidence 347899999999999999999999999999 4444444444433 12357899999998766554
No 344
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.46 E-value=1.4e-06 Score=84.96 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=50.2
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
+.+++.+.+..|++.|-.+|.|++|||+. |.+....|..++..-....++|++|+++....+|.
T Consensus 221 ~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT 287 (614)
T KOG0927|consen 221 DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCT 287 (614)
T ss_pred ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhh
Confidence 47899999999999999999999999999 55555556666642212279999999988877654
No 345
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.46 E-value=1.8e-06 Score=81.44 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=97.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc--cccc-------------------eEEEEe---cCCcc-----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT--QFVP-------------------RIWVCT---MSGQK----------- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~-------------------~~~v~~---v~~~~----------- 106 (398)
.-..++|+|.+|+|||||.+++..-..-.. .|.+ ++|-+- ++...
T Consensus 312 ~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~ 391 (534)
T COG4172 312 RGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR 391 (534)
T ss_pred CCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh
Confidence 456899999999999999999954311000 1111 111110 11111
Q ss_pred ---------cHHHHHHHHHHHcCCCCCC--CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHh
Q 015891 107 ---------TAESIVKRILKRLGVDDGT--TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSK 168 (398)
Q Consensus 107 ---------~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~ 168 (398)
...+.....+...|++... ..+.+.+++++++..+++.+--|+-+|+||++.+. ..++.|+
T Consensus 392 vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr- 470 (534)
T COG4172 392 VHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLR- 470 (534)
T ss_pred hcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHH-
Confidence 1223344566777777643 33456899999999999999999999999999954 2223333
Q ss_pred HcCCCCCCEEEEEeCChHHHHHhcCCCceEEcCCCCChhHHHHHHH
Q 015891 169 VLPRGYGERLIITSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYR 214 (398)
Q Consensus 169 ~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~ 214 (398)
.+....+-.-|++|||-.|...++....+++-+..-+...+..+|.
T Consensus 471 ~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 471 DLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred HHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 2334568889999999999988765544455444444344555553
No 346
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.46 E-value=1.4e-06 Score=76.59 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=57.6
Q ss_pred HHHHHcCCCCCCCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChH
Q 015891 114 RILKRLGVDDGTTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEK 186 (398)
Q Consensus 114 ~il~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~ 186 (398)
..+..+|+.+...... ..+++++++..++++|..++-+|+-|++. |+...+.+...+. ...|.+||++.|+-+
T Consensus 130 ~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 130 DALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred HHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 4455566554333222 37999999999999999999999999988 4433333333332 456899999999999
Q ss_pred HHHHhcC
Q 015891 187 LTTEMVG 193 (398)
Q Consensus 187 v~~~~~~ 193 (398)
++...+.
T Consensus 210 lA~~Y~~ 216 (258)
T COG3638 210 LAKKYAD 216 (258)
T ss_pred HHHHHHh
Confidence 8887643
No 347
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.6e-06 Score=79.69 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=54.0
Q ss_pred HHHHHHcCCCC-----CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeC
Q 015891 113 KRILKRLGVDD-----GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSR 183 (398)
Q Consensus 113 ~~il~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR 183 (398)
..+++.+++.. ........+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH 205 (252)
T PRK14256 126 ESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTH 205 (252)
T ss_pred HHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 44555566532 11223347899999999999999999999999999 3433333333332 122468999999
Q ss_pred ChHHHHHhcC
Q 015891 184 NEKLTTEMVG 193 (398)
Q Consensus 184 ~~~v~~~~~~ 193 (398)
+......+++
T Consensus 206 ~~~~~~~~~d 215 (252)
T PRK14256 206 NMQQAARVSD 215 (252)
T ss_pred CHHHHHhhCC
Confidence 9887665433
No 348
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=2.6e-06 Score=78.04 Aligned_cols=65 Identities=9% Similarity=0.143 Sum_probs=48.7
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcC
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...+.+++++..+.+.+..++-+++||++. |......+...+. ...+..||++||+.+....+++
T Consensus 144 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d 212 (249)
T PRK14253 144 FGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISD 212 (249)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCC
Confidence 347889999999999999999999999999 4444444444443 1235789999999887766533
No 349
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=7.2e-06 Score=81.95 Aligned_cols=189 Identities=15% Similarity=0.142 Sum_probs=101.5
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC--CccccceEEEEecCCcccHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV--KTQFVPRIWVCTMSGQKTAESIVKRI 115 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~--~~~F~~~~~v~~v~~~~~~~~~~~~i 115 (398)
.+++|.+..++.|..++.. ..-...+.++|+.|+||||+|+.++....- ....+. +....+.. .+
T Consensus 16 ~diiGq~~i~~~L~~~i~~---~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~p------c~~c~nc~----~i 82 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKL---QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEP------CGKCENCV----EI 82 (486)
T ss_pred HHccChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCC------CCccHHHH----HH
Confidence 5689999999999999964 223456788999999999999999775210 000000 00000000 00
Q ss_pred HHHcCCCCCCC---CCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCCC--HHHHHHHHhHcCCC-CCCEEEEEeCC
Q 015891 116 LKRLGVDDGTT---NSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFED--MEVCKHLSKVLPRG-YGERLIITSRN 184 (398)
Q Consensus 116 l~~l~~~~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~~-~gs~IIiTTR~ 184 (398)
. +...... ......+.+..+ .+...+ .+++-++|+|+++. ....+.|...+... +...+|++|.+
T Consensus 83 ~---~g~~~d~~eidaas~~gvd~ir-~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~ 158 (486)
T PRK14953 83 D---KGSFPDLIEIDAASNRGIDDIR-ALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTE 158 (486)
T ss_pred h---cCCCCcEEEEeCccCCCHHHHH-HHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 0 0000000 000011122212 122222 24567999999983 35555666566432 34455555543
Q ss_pred -hHHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 185 -EKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 185 -~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
..+...+......+.+.+++. +.....+.+.+...+...++ +.+..|++.++|.+..+.
T Consensus 159 ~~kl~~tI~SRc~~i~f~~ls~-~el~~~L~~i~k~egi~id~---~al~~La~~s~G~lr~al 218 (486)
T PRK14953 159 YDKIPPTILSRCQRFIFSKPTK-EQIKEYLKRICNEEKIEYEE---KALDLLAQASEGGMRDAA 218 (486)
T ss_pred HHHHHHHHHHhceEEEcCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 344434334456899999988 55665666544333322222 256677888888776544
No 350
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=3.3e-06 Score=77.90 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=47.3
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~ 191 (398)
...+.++.++..+.+.+..++-+++||++. |......+...+. ...+..||++||+.+....+
T Consensus 154 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~ 220 (259)
T PRK14274 154 LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARV 220 (259)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh
Confidence 347899999999999999999999999999 4444444444332 12357899999998776654
No 351
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=3.3e-06 Score=77.87 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=47.9
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcC
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...+.+++++..+.+++..++-+++||++. |......+...+. ...+..||++||+...+..+++
T Consensus 149 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d 217 (259)
T PRK14260 149 LGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSD 217 (259)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 347899999999999999999999999999 4433333333332 1224789999999887776543
No 352
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=4.9e-06 Score=75.59 Aligned_cols=68 Identities=12% Similarity=0.189 Sum_probs=50.1
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+...... .++++.+
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~---~d~~~~l 208 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN---ADKIIVL 208 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh---CCEEEEE
Confidence 47889999999999999999999999999 4444444444442 1227789999999887754 3445544
No 353
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.44 E-value=4.7e-06 Score=81.17 Aligned_cols=178 Identities=16% Similarity=0.267 Sum_probs=100.6
Q ss_pred CCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891 37 PANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT 107 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~ 107 (398)
-.++.|.+..+++|.+.+... .+-...+.+.|+|++|+|||+||+++++. ....| +. +..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~-i~~--- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IR-VVG--- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EE-Eeh---
Confidence 366889999999888876420 12235678999999999999999999987 33333 22 111
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhH---cC
Q 015891 108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKV---LP 171 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~---l~ 171 (398)
..+... .++ .........+.......+.+|+|||++.. .....+... +.
T Consensus 213 -s~l~~k---~~g-----------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld 277 (398)
T PTZ00454 213 -SEFVQK---YLG-----------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMD 277 (398)
T ss_pred -HHHHHH---hcc-----------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhh
Confidence 111111 011 11122333444445567899999997732 111122222 21
Q ss_pred ---CCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891 172 ---RGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE 244 (398)
Q Consensus 172 ---~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 244 (398)
...+..||+||...+.... +. ..+..+++++.+. ++...+|+..........+. ...++++...|..-
T Consensus 278 ~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~-~~R~~Il~~~~~~~~l~~dv----d~~~la~~t~g~sg 352 (398)
T PTZ00454 278 GFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR-RQKRLIFQTITSKMNLSEEV----DLEDFVSRPEKISA 352 (398)
T ss_pred ccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCH-HHHHHHHHHHHhcCCCCccc----CHHHHHHHcCCCCH
Confidence 2245678888886554322 11 2356788866665 66777777655433222111 34566667766654
Q ss_pred h
Q 015891 245 D 245 (398)
Q Consensus 245 a 245 (398)
|
T Consensus 353 a 353 (398)
T PTZ00454 353 A 353 (398)
T ss_pred H
Confidence 3
No 354
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.44 E-value=4e-05 Score=77.61 Aligned_cols=154 Identities=14% Similarity=0.210 Sum_probs=90.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHcCCCCCccc--cceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQF--VPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL 141 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l 141 (398)
..+.|+|..|+|||.|++++++. ....+ ..+.|+. ...++..+...+.. .. ...+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit-------aeef~~el~~al~~----------~~----~~~f 371 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS-------SEEFTNEFINSIRD----------GK----GDSF 371 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee-------HHHHHHHHHHHHHh----------cc----HHHH
Confidence 45899999999999999999987 33222 1234444 23333343333211 01 1123
Q ss_pred HHHHhCCCcEEEecCCCC----HHHHHHHHhHcC--CCCCCEEEEEeCCh---------HHHHHhcCCCceEEcCCCCCh
Q 015891 142 QQQLIGKRYLIVLDDFED----MEVCKHLSKVLP--RGYGERLIITSRNE---------KLTTEMVGEENLHQLQPLSDQ 206 (398)
Q Consensus 142 ~~~l~~k~~LlVLDdv~~----~~~~~~l~~~l~--~~~gs~IIiTTR~~---------~v~~~~~~~~~~~~l~~L~~~ 206 (398)
.+.+. +.-+|||||+.. ..+.+.|...+. ...+..|||||+.. .+.+.+ ....++++++.+.
T Consensus 372 ~~~y~-~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf-~~GLvv~I~~PD~- 448 (617)
T PRK14086 372 RRRYR-EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRF-EWGLITDVQPPEL- 448 (617)
T ss_pred HHHhh-cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhh-hcCceEEcCCCCH-
Confidence 33333 357899999983 233344444444 33466788888752 223333 3466889999998
Q ss_pred hHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891 207 ESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDA 246 (398)
Q Consensus 207 e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 246 (398)
+....++++.+.......+. +++.-|++++.+....+
T Consensus 449 EtR~aIL~kka~~r~l~l~~---eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 449 ETRIAILRKKAVQEQLNAPP---EVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHHHHHHHhcCCCCCH---HHHHHHHHhccCCHHHH
Confidence 77777877765544444333 35666677666554443
No 355
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=2.1e-06 Score=78.76 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=47.4
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~ 191 (398)
...+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+.+.+..+
T Consensus 145 ~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~ 211 (250)
T PRK14262 145 TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRI 211 (250)
T ss_pred hhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence 347889999999999999999999999998 4444444444432 12357899999998866554
No 356
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=5.7e-06 Score=84.25 Aligned_cols=195 Identities=14% Similarity=0.109 Sum_probs=104.9
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
++++|.+...+.|...+.. ..-...+.++|+.|+||||+|+.+.+...-...-. ..+.+.-.....+..
T Consensus 16 ~~viGq~~v~~~L~~~i~~---~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~--------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQ---GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD--------GEPCNECEICKAITN 84 (559)
T ss_pred HhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------CCCCCccHHHHHHhc
Confidence 6789999999999999975 22356678899999999999999976521111000 000000001111111
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCCCC-CCEEE-EEeCChHHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPRGY-GERLI-ITSRNEKLTT 189 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~-gs~II-iTTR~~~v~~ 189 (398)
....+..........+.+..+..+... ...+.-++|+|+++ +......|...+..-+ .+.+| .||....+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 100000000000112233322222221 13456799999999 4455566666664322 34444 4444444444
Q ss_pred HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
.+......+++.+++. ++....+...+...+...++ +.+..|++.++|-+..+.
T Consensus 165 tI~SRc~~~~f~~~~~-~ei~~~L~~i~~~egi~i~~---~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 165 TILSRCQRFDFKRISV-EDIVERLKYILDKEGIEYED---EALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHhHheEEecCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 4444566889999988 55666666644433332222 256677788888776543
No 357
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=4.2e-06 Score=77.28 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=49.7
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcC
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+...+..+++
T Consensus 149 ~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d 219 (261)
T PRK14258 149 LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSD 219 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcC
Confidence 348899999999999999999999999998 4444444444433 1247899999999988776543
No 358
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.44 E-value=2e-06 Score=89.21 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=50.7
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
...+++++++-.+++.+-.+|-+|+||++. |.+....+...+. ...|.++|++||.......+ ++++-++
T Consensus 608 ~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~a---drIiVl~ 681 (709)
T COG2274 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSA---DRIIVLD 681 (709)
T ss_pred CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhc---cEEEEcc
Confidence 348999999999999999999999999999 4444444444443 34567778778777666654 4455443
No 359
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.43 E-value=6.6e-06 Score=73.81 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=49.3
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHh--HcC--CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSK--VLP--RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~--~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+.+++++..+.+.+..++-++++|++. |....+.+.. .+. ...+.+||++||+...... .++++.+
T Consensus 139 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~---~d~i~~l 214 (218)
T cd03290 139 INLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH---ADWIIAM 214 (218)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh---CCEEEEe
Confidence 347899999999999999999999999999 4433333322 111 2347899999999887643 2445544
No 360
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.43 E-value=6.3e-06 Score=76.78 Aligned_cols=126 Identities=16% Similarity=0.122 Sum_probs=74.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE----EEecCCcc-----cHH-----------HHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW----VCTMSGQK-----TAE-----------SIVKRILKRLG 120 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~----v~~v~~~~-----~~~-----------~~~~~il~~l~ 120 (398)
..-.+++|+|++|+|||||++.++...... .+.++ +.++.+.. +.. .....++..++
T Consensus 61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~ 137 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQ 137 (282)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhC
Confidence 345689999999999999999998762111 11111 11111110 000 01122222222
Q ss_pred CCC---------C---CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHh-HcC-CCCCCEEEEEeC
Q 015891 121 VDD---------G---TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSK-VLP-RGYGERLIITSR 183 (398)
Q Consensus 121 ~~~---------~---~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~-~l~-~~~gs~IIiTTR 183 (398)
+.. . .......+.+++++..+.+.+..++-+++||++. |....+.+.. .+. ...+..||++||
T Consensus 138 l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH 217 (282)
T cd03291 138 LEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTS 217 (282)
T ss_pred CHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 210 0 0111347889999999999999999999999998 4444333332 111 123678999999
Q ss_pred ChHHHH
Q 015891 184 NEKLTT 189 (398)
Q Consensus 184 ~~~v~~ 189 (398)
+.....
T Consensus 218 ~~~~~~ 223 (282)
T cd03291 218 KMEHLK 223 (282)
T ss_pred ChHHHH
Confidence 988765
No 361
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=5.6e-06 Score=85.04 Aligned_cols=198 Identities=12% Similarity=0.142 Sum_probs=108.6
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
..++|.+..++.|..++.. ..-...+.++|+.|+||||+|+.+++...-...... .......-...+.+..
T Consensus 16 ~~liGq~~i~~~L~~~l~~---~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~------~~~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 16 DELVGQEAIATTLKNALIS---NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP------TPEPCGKCELCRAIAA 86 (620)
T ss_pred hhccChHHHHHHHHHHHHc---CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC------CCCCCcccHHHHHHhc
Confidence 5789999999999999965 122357889999999999999999887211100000 0001111111122221
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHH----hCCCcEEEecCCC--CHHHHHHHHhHcCCCC-CCEEEEEeCC-hHHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL----IGKRYLIVLDDFE--DMEVCKHLSKVLPRGY-GERLIITSRN-EKLTT 189 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~-gs~IIiTTR~-~~v~~ 189 (398)
.................+..+..+...- .++.-++|+|+++ +.+..+.|...+..-+ .+.+|++|.+ ..+..
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 1111100000001123334443332221 2345799999999 4455666666665332 3444544544 44554
Q ss_pred HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
.+......+++.+++. ++....+.+.+...+....+ +.+..|++.++|.+..+..
T Consensus 167 TIrSRc~~~~f~~l~~-~ei~~~L~~ia~kegi~is~---~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 167 TIISRCQRFDFRRIPL-EAMVQHLSEIAEKESIEIEP---EALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HHHhheeEEEecCCCH-HHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 5545567889999988 55555555544333222222 2567788888888765544
No 362
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.43 E-value=4.4e-06 Score=76.02 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=47.2
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHH
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTT 189 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~ 189 (398)
...+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|..||++||+...+.
T Consensus 138 ~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 138 SQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 347899999999999999999999999999 4444444444442 125788999999988775
No 363
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.43 E-value=6.1e-06 Score=74.48 Aligned_cols=237 Identities=16% Similarity=0.185 Sum_probs=130.3
Q ss_pred CCcccchhhHHHHHHHHhcc-CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNR-GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL 116 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~-~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il 116 (398)
.+|||.++..++|.-.+... ......--+.++||+|.||||||..+++. +...+.. . -.....-..-+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k~----t-sGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLKI----T-SGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeEe----c-ccccccChhhHHHHH
Confidence 68999999999988877652 24455678999999999999999999998 4333221 1 011111011111111
Q ss_pred HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC--CHHHHHHHHhHcC---------CCCCCE--------
Q 015891 117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLP---------RGYGER-------- 177 (398)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~---------~~~gs~-------- 177 (398)
.. -.+.-++.+|+++ +....+.|..... .++++|
T Consensus 99 t~---------------------------Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 99 TN---------------------------LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred hc---------------------------CCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 11 1245678888888 3333333332221 233443
Q ss_pred ---EEEEeCChHHHHHhcC-CCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCCh
Q 015891 178 ---LIITSRNEKLTTEMVG-EENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSK 253 (398)
Q Consensus 178 ---IIiTTR~~~v~~~~~~-~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~l 253 (398)
|=.|||--.+...+.+ -..+.+++.-+. ++......+....-+...++ +.+.+|+++..|.|.-...
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~-~eL~~Iv~r~a~~l~i~i~~---~~a~eIA~rSRGTPRIAnR----- 222 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTV-EELEEIVKRSAKILGIEIDE---EAALEIARRSRGTPRIANR----- 222 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCH-HHHHHHHHHHHHHhCCCCCh---HHHHHHHHhccCCcHHHHH-----
Confidence 3367886544333322 245667776676 66777777644433333333 3677899999999974222
Q ss_pred HHHHHHhh---hhcCCchhHHhHHHHHhhhccCCCCCCcchhhhhhHHHHHHHHHhhhcchHhhhHHHHHHHHHhCCchH
Q 015891 254 QLVEELGK---LQGENTKLMERKRSILRDSANLPNSKQLEEEVEKLQGQITKMIEEKRAKQREQRKNAEELKRKCGGLPL 330 (398)
Q Consensus 254 pl~~~lg~---~l~~~~~~~~~w~~~L~~~~~lp~~~~~~~~~~~l~~sy~~l~~e~cf~~~~~~~~~~~il~~~g~~~~ 330 (398)
|++.+-. .-....-+......+|+.+. -..+-+...|..+..-+...++.-|.
T Consensus 223 -LLrRVRDfa~V~~~~~I~~~ia~~aL~~L~-----------------------Vd~~GLd~~D~k~L~~li~~f~GgPV 278 (332)
T COG2255 223 -LLRRVRDFAQVKGDGDIDRDIADKALKMLD-----------------------VDELGLDEIDRKYLRALIEQFGGGPV 278 (332)
T ss_pred -HHHHHHHHHHHhcCCcccHHHHHHHHHHhC-----------------------cccccccHHHHHHHHHHHHHhCCCCc
Confidence 1221111 01000011111222222211 11233445666778888888888899
Q ss_pred HHHHHhhhhhh
Q 015891 331 AAKLLGEIKAQ 341 (398)
Q Consensus 331 ~~~~l~~~~~~ 341 (398)
|+..++..++.
T Consensus 279 Gl~tia~~lge 289 (332)
T COG2255 279 GLDTIAAALGE 289 (332)
T ss_pred cHHHHHHHhcC
Confidence 88888766443
No 364
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=4.7e-06 Score=76.54 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=48.1
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcC
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+.+.+..+++
T Consensus 147 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d 215 (252)
T PRK14255 147 LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISD 215 (252)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCC
Confidence 347889999999999999999999999999 4444444444332 1224689999999887766433
No 365
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.42 E-value=7e-06 Score=81.29 Aligned_cols=158 Identities=18% Similarity=0.247 Sum_probs=91.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCcccc--ceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFV--PRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV 140 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~ 140 (398)
...+.|+|++|+|||+|++++++. +...+. .+.|++ ...++..+...+... .. ..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~-------~~~f~~~~~~~~~~~----------~~----~~ 186 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYIT-------SEKFLNDLVDSMKEG----------KL----NE 186 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE-------HHHHHHHHHHHHhcc----------cH----HH
Confidence 446999999999999999999987 433322 244544 234455555444211 11 12
Q ss_pred HHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeC-ChHHHHHh----c---CCCceEEcCCCCCh
Q 015891 141 LQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSR-NEKLTTEM----V---GEENLHQLQPLSDQ 206 (398)
Q Consensus 141 l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR-~~~v~~~~----~---~~~~~~~l~~L~~~ 206 (398)
+...+..+.-+|++||++.. ...+.+...+. ...+..||+||+ ...-...+ . .....+++++.+.
T Consensus 187 f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~- 265 (440)
T PRK14088 187 FREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE- 265 (440)
T ss_pred HHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCH-
Confidence 33344446779999999832 11122333332 223557888874 43322211 1 2245788999988
Q ss_pred hHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 207 ESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 207 e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
+....++++.+.......++ +...-|++.+.|....+.
T Consensus 266 e~r~~IL~~~~~~~~~~l~~---ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 266 ETRKKIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHHHHHHhcCCCCCH---HHHHHHHhccccCHHHHH
Confidence 77777777755443333333 366777777777655543
No 366
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.42 E-value=2.8e-06 Score=87.40 Aligned_cols=135 Identities=15% Similarity=0.226 Sum_probs=84.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE-----------------EEecCCc-----------------c
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW-----------------VCTMSGQ-----------------K 106 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~-----------------v~~v~~~-----------------~ 106 (398)
..-..++|+|++|+|||||++.+..-... ..+.+. +.++.++ .
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~ 440 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDP---QQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPN 440 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCc
Confidence 45678999999999999999999764111 111111 1111111 1
Q ss_pred cHHHHHHHHHHHcCCCCCC-----------CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891 107 TAESIVKRILKRLGVDDGT-----------TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP- 171 (398)
Q Consensus 107 ~~~~~~~~il~~l~~~~~~-----------~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~- 171 (398)
...+.+...++..++.+.- ......+++++++..+++.+-.++-++||||+. |.+..+.+...+.
T Consensus 441 ~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~ 520 (574)
T PRK11160 441 ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520 (574)
T ss_pred cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1222344555555543210 112337889999999999999999999999999 4454455554443
Q ss_pred CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 172 RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
...+.++|++||....... .++++.++
T Consensus 521 ~~~~~tviiitHr~~~~~~---~d~i~~l~ 547 (574)
T PRK11160 521 HAQNKTVLMITHRLTGLEQ---FDRICVMD 547 (574)
T ss_pred HcCCCEEEEEecChhHHHh---CCEEEEEe
Confidence 2346788888888766554 35556553
No 367
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.42 E-value=3.4e-06 Score=87.96 Aligned_cols=137 Identities=14% Similarity=0.098 Sum_probs=86.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccceEEEEecCCcc------------------------cHHHHHH
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVPRIWVCTMSGQK------------------------TAESIVK 113 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~~~~v~~v~~~~------------------------~~~~~~~ 113 (398)
..-..++|+|++|+|||||++.+..-... ... ++...-+.++.+.. ...+...
T Consensus 476 ~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~ 555 (659)
T TIGR00954 476 PSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLE 555 (659)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHH
Confidence 34568999999999999999999765111 110 11000011111110 0122345
Q ss_pred HHHHHcCCCCCCC----------CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEE
Q 015891 114 RILKRLGVDDGTT----------NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLII 180 (398)
Q Consensus 114 ~il~~l~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIi 180 (398)
++++.+++..... .....+++++++..+++.+..++-+++||++. |.+..+.+...+.. .+..+|+
T Consensus 556 ~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~-~~~tvI~ 634 (659)
T TIGR00954 556 QILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE-FGITLFS 634 (659)
T ss_pred HHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH-cCCEEEE
Confidence 5666666543111 11348899999999999999999999999999 45555555555543 3778999
Q ss_pred EeCChHHHHHhcCCCceEEcC
Q 015891 181 TSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 181 TTR~~~v~~~~~~~~~~~~l~ 201 (398)
+||+...... .++++.++
T Consensus 635 isH~~~~~~~---~d~il~l~ 652 (659)
T TIGR00954 635 VSHRKSLWKY---HEYLLYMD 652 (659)
T ss_pred EeCchHHHHh---CCEEEEEe
Confidence 9999887654 35666664
No 368
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.42 E-value=3e-06 Score=87.52 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=51.0
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
..+++++++-.+++.+-.++-++||||+. |.+....+...+. ...+.++|++||+......+ ++++.++
T Consensus 480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~---D~Ii~l~ 552 (582)
T PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKA---DEILVVE 552 (582)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhC---CEEEEEE
Confidence 47899999999999999999999999999 4444444444443 23568889999988776553 4555553
No 369
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=4.1e-06 Score=76.93 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=48.6
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~ 192 (398)
...+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+......++
T Consensus 147 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~ 214 (252)
T PRK14272 147 TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVS 214 (252)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC
Confidence 347899999999999999999999999999 4444444444443 123588999999998776543
No 370
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.42 E-value=2.2e-06 Score=88.20 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=52.3
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
..+++++++-.+.+.+-.++-+++||++. |....+.+...+. ..++..+|+.||+......+ ++++.++
T Consensus 469 ~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~---D~ii~l~ 541 (571)
T TIGR02203 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKA---DRIVVMD 541 (571)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhC---CEEEEEe
Confidence 37899999999999999999999999999 4444455554444 33568899999998776653 5566663
No 371
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=4.3e-06 Score=76.84 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=47.5
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~ 191 (398)
...+.+++++..+.+.+...+-+++||++. |....+.+...+. ...+..||++||+......+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~ 214 (253)
T PRK14261 148 LSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARV 214 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhh
Confidence 347899999999999999999999999998 4444444444433 12247899999998877654
No 372
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=4.7e-06 Score=82.66 Aligned_cols=194 Identities=15% Similarity=0.173 Sum_probs=103.9
Q ss_pred CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc-cc-eEEEEecCCcccHHHHHHH
Q 015891 37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF-VP-RIWVCTMSGQKTAESIVKR 114 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~-~~~v~~v~~~~~~~~~~~~ 114 (398)
-++++|.+..++.|..++.. ..-...+.++|+.|+||||+|+.+++...-...- +. .+-.+ .+. ..
T Consensus 16 ~~diiGq~~~v~~L~~~i~~---~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c-----~~C----~~ 83 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRF---NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC-----ASC----KE 83 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHc---CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc-----HHH----HH
Confidence 36799999999999999964 2234678899999999999999997752111000 00 00000 000 00
Q ss_pred HHHHcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCCC--HHHHHHHHhHcCC-CCCCEEEEEeCC-h
Q 015891 115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFED--MEVCKHLSKVLPR-GYGERLIITSRN-E 185 (398)
Q Consensus 115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~-~~gs~IIiTTR~-~ 185 (398)
+...-.............+.+..+. +...+ ..++-++|+||++. ....+.|...+.. ...+.+|++|.+ .
T Consensus 84 i~~~~~~d~~~i~g~~~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~ 162 (451)
T PRK06305 84 ISSGTSLDVLEIDGASHRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIH 162 (451)
T ss_pred HhcCCCCceEEeeccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChH
Confidence 0000000000000000011222221 11222 25677999999983 3455566666643 235556666543 4
Q ss_pred HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 186 KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 186 ~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
.+...+......+++.+++. ++....+.+.+...+...+ .+.+..|++.++|.+..+.
T Consensus 163 kl~~tI~sRc~~v~f~~l~~-~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a~ 220 (451)
T PRK06305 163 KIPGTILSRCQKMHLKRIPE-ETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDAE 220 (451)
T ss_pred hcchHHHHhceEEeCCCCCH-HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 44444445567899999998 5566666654433332222 2366778888888765444
No 373
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.41 E-value=2.3e-06 Score=97.41 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=84.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc-------------ceEEEEe---cCCccc---------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV-------------PRIWVCT---MSGQKT--------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~-------------~~~~v~~---v~~~~~--------------- 107 (398)
.-.+++|.|++|+|||||++.+..-..-. . .+. ...++.. +....+
T Consensus 955 ~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~ 1034 (2272)
T TIGR01257 955 ENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS 1034 (2272)
T ss_pred CCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCC
Confidence 45689999999999999999997642100 0 000 0111110 000000
Q ss_pred ---HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEE
Q 015891 108 ---AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLI 179 (398)
Q Consensus 108 ---~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~II 179 (398)
..+...++++.+++.... ......+++++++..+++++..++-+|+||++. |....+.+...+. ...|..||
T Consensus 1035 ~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TII 1114 (2272)
T TIGR01257 1035 WEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTII 1114 (2272)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 112345677778876532 233458999999999999999999999999999 4433333333322 12478899
Q ss_pred EEeCChHHHHHhcC
Q 015891 180 ITSRNEKLTTEMVG 193 (398)
Q Consensus 180 iTTR~~~v~~~~~~ 193 (398)
+|||+.+.+..+++
T Consensus 1115 ltTHdmdea~~laD 1128 (2272)
T TIGR01257 1115 MSTHHMDEADLLGD 1128 (2272)
T ss_pred EEECCHHHHHHhCC
Confidence 99999998877644
No 374
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.41 E-value=3.8e-06 Score=78.08 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=47.9
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~ 191 (398)
...+.+++++..+.+.+..++-++|||++. |....+.+...+. ...+..||++||+.+.+..+
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~ 233 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARV 233 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhh
Confidence 347889999999999999999999999999 4444444444443 12357899999998876654
No 375
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=8.4e-06 Score=75.85 Aligned_cols=177 Identities=15% Similarity=0.246 Sum_probs=105.4
Q ss_pred CCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891 38 ANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA 108 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~ 108 (398)
+++=|-++.+++|.+.+.-. -+-..++-|.++||+|.|||-||++++++ ....| +. +..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Ir-vvgS--- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IR-VVGS--- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EE-eccH---
Confidence 55678899999998876541 23456889999999999999999999998 44444 33 2211
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-----------------HHHHHHHhH--
Q 015891 109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-----------------EVCKHLSKV-- 169 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-----------------~~~~~l~~~-- 169 (398)
++.+..+ | .+..-.+..+.-+-...+.+|.+|+++.. ..+++|...
T Consensus 220 -ElVqKYi---G-----------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 220 -ELVQKYI---G-----------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred -HHHHHHh---c-----------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 1222221 1 12222233333344567999999999832 222222221
Q ss_pred cCCCCCCEEEEEeCChHHHHHh----cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891 170 LPRGYGERLIITSRNEKLTTEM----VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED 245 (398)
Q Consensus 170 l~~~~gs~IIiTTR~~~v~~~~----~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 245 (398)
|....+-+||..|...+++... ...++.++++ |++.+.-.++|+-....-....+- ..+.+++.|.|..=|
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfp-lPd~~gR~~Il~IHtrkM~l~~dv----d~e~la~~~~g~sGA 359 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFP-LPDEEGRAEILKIHTRKMNLADDV----DLELLARLTEGFSGA 359 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCcccceeecC-CCCHHHHHHHHHHHhhhccCccCc----CHHHHHHhcCCCchH
Confidence 1123467899888765544331 2337888995 776576777777544332222111 456677778887743
No 376
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=4.7e-06 Score=73.85 Aligned_cols=129 Identities=12% Similarity=0.083 Sum_probs=70.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEE----------------EecCCccc--H-HHHHHHHHHHcCC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWV----------------CTMSGQKT--A-ESIVKRILKRLGV 121 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v----------------~~v~~~~~--~-~~~~~~il~~l~~ 121 (398)
..-.+++|+|++|+|||||++.+..-........+.+++ .++.+... . ..+...+......
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 110 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC 110 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhh
Confidence 345799999999999999999998762200011111111 11111110 0 0111222111111
Q ss_pred CCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEE-EEeCChHHHHH
Q 015891 122 DDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLI-ITSRNEKLTTE 190 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~II-iTTR~~~v~~~ 190 (398)
. ........+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..+| +|+++.+.+..
T Consensus 111 ~-~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~ 185 (202)
T cd03233 111 K-GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYD 185 (202)
T ss_pred c-cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHH
Confidence 0 11222347889999999999999999999999998 4444444444433 22245544 45665444443
No 377
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.41 E-value=4.8e-06 Score=85.31 Aligned_cols=202 Identities=18% Similarity=0.179 Sum_probs=121.1
Q ss_pred CCCCCCCCCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891 28 VPKVSKSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT 107 (398)
Q Consensus 28 ~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~ 107 (398)
..+-.++.++.+.|-|..-.+.+.. ....+.+.|.-|+|.|||||+.++... ...-..+.|++--.++.+
T Consensus 9 ~sk~~~P~~~~~~v~R~rL~~~L~~-------~~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~dnd 78 (894)
T COG2909 9 PSKLVRPVRPDNYVVRPRLLDRLRR-------ANDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDESDND 78 (894)
T ss_pred ccccCCCCCcccccccHHHHHHHhc-------CCCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCccCC
Confidence 3334445556778888766655543 346899999999999999999999763 223345899993345677
Q ss_pred HHHHHHHHHHHcCCCCCCCCCc--------CCCchHHHHHHHHHHHh--CCCcEEEecCCC---CHHHHHHHHhHcCCC-
Q 015891 108 AESIVKRILKRLGVDDGTTNSF--------EGQGLAFLDYVLQQQLI--GKRYLIVLDDFE---DMEVCKHLSKVLPRG- 173 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~---~~~~~~~l~~~l~~~- 173 (398)
+..+...++..++...+..... ....+..+...+..-+. .++.++||||.. +...-..+..++.+.
T Consensus 79 p~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P 158 (894)
T COG2909 79 PARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP 158 (894)
T ss_pred HHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC
Confidence 8888888888887433221110 01223333444444333 368999999987 554445555555533
Q ss_pred CCCEEEEEeCChHHHHH--hcCCCceEEcC----CCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891 174 YGERLIITSRNEKLTTE--MVGEENLHQLQ----PLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDA 246 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~--~~~~~~~~~l~----~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 246 (398)
++-++|||||.+.-+.. +.-.+..+++. .++. |++..||....+..- ....++.+.+...|-+-|+
T Consensus 159 ~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~-eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al 230 (894)
T COG2909 159 ENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDT-EEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAAL 230 (894)
T ss_pred CCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCCh-HHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHH
Confidence 57899999998732111 01112233332 4666 556777766543211 1124556666666666554
No 378
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=4.6e-06 Score=76.54 Aligned_cols=65 Identities=11% Similarity=0.127 Sum_probs=48.0
Q ss_pred CcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891 128 SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 128 ~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~ 192 (398)
....+.+++++..+.+.+..++-+++||++. |......+...+. ...+..||++||+.+.+..++
T Consensus 145 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~ 213 (251)
T PRK14270 145 ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVS 213 (251)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhc
Confidence 3458899999999999999999999999999 4444444443433 122478999999988766643
No 379
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.41 E-value=9.2e-06 Score=85.74 Aligned_cols=154 Identities=17% Similarity=0.175 Sum_probs=85.1
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCC---CCCccc-cceEEEEecCCcccHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKP---DVKTQF-VPRIWVCTMSGQKTAESIVK 113 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~---~~~~~F-~~~~~v~~v~~~~~~~~~~~ 113 (398)
++++||+.+++++.+.|.. ....-+.++|++|+|||++|+.+++.. .+...+ ...+|.. . ..
T Consensus 182 ~~~igr~~ei~~~~~~L~~----~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~--~----~~---- 247 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCR----RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL--D----MG---- 247 (731)
T ss_pred CcccCcHHHHHHHHHHHhc----CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe--c----HH----
Confidence 5799999999999998865 344557899999999999999998762 111111 2233322 1 11
Q ss_pred HHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-----------HHHHHHHhHcCCCCCCEEEEEe
Q 015891 114 RILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-----------EVCKHLSKVLPRGYGERLIITS 182 (398)
Q Consensus 114 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-----------~~~~~l~~~l~~~~gs~IIiTT 182 (398)
.++..... .....+.+...+...-..++.+|++||++.. +..+.|...+..+ .-++|-+|
T Consensus 248 ~l~a~~~~--------~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaT 318 (731)
T TIGR02639 248 SLLAGTKY--------RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGST 318 (731)
T ss_pred HHhhhccc--------cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEec
Confidence 11100000 0011122222233222346889999999822 3344555555433 23445444
Q ss_pred CChHH------HHHhcCCCceEEcCCCCChhHHHHHHHh
Q 015891 183 RNEKL------TTEMVGEENLHQLQPLSDQESCWLIYRD 215 (398)
Q Consensus 183 R~~~v------~~~~~~~~~~~~l~~L~~~e~~~~l~~~ 215 (398)
...+. -..+......+++++++. ++...+++.
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~-~~~~~il~~ 356 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSI-EETVKILKG 356 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCH-HHHHHHHHH
Confidence 43221 111112345789999988 667777764
No 380
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.41 E-value=5.6e-07 Score=81.91 Aligned_cols=98 Identities=15% Similarity=0.060 Sum_probs=61.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCc--ccHHHHHHHHHHHcCCCCCCCCCcC-CCchHHH
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQ--KTAESIVKRILKRLGVDDGTTNSFE-GQGLAFL 137 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~--~~~~~~~~~il~~l~~~~~~~~~~~-~~~~~~~ 137 (398)
..-..++|+|++|+|||||++.+++..... +|+..+|+. +..+ .+..++++.+...+-......+... .......
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~-vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVL-LIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEE-EccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 456789999999999999999999984333 789999988 5555 7888888888333211111111000 0001111
Q ss_pred HHHHHHH-HhCCCcEEEecCCCCH
Q 015891 138 DYVLQQQ-LIGKRYLIVLDDFEDM 160 (398)
Q Consensus 138 ~~~l~~~-l~~k~~LlVLDdv~~~ 160 (398)
....... -.+++.++++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 1112211 2468999999999854
No 381
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2.4e-06 Score=78.38 Aligned_cols=63 Identities=10% Similarity=0.131 Sum_probs=47.6
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~ 191 (398)
...+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+...+..+
T Consensus 145 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~ 211 (250)
T PRK14240 145 LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRI 211 (250)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhh
Confidence 347899999999999999999999999998 4444444443332 12367899999998866654
No 382
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.40 E-value=3.6e-06 Score=85.02 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCCC-C-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEe
Q 015891 111 IVKRILKRLGVDD-G-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITS 182 (398)
Q Consensus 111 ~~~~il~~l~~~~-~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTT 182 (398)
...++++.+++.. . .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...++.||++|
T Consensus 380 ~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivs 459 (490)
T PRK10938 380 LAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVS 459 (490)
T ss_pred HHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 3456777788764 2 2333458999999999999999999999999999 4444444444443 22235699999
Q ss_pred CChHHHHH
Q 015891 183 RNEKLTTE 190 (398)
Q Consensus 183 R~~~v~~~ 190 (398)
|+.+.+..
T Consensus 460 Hd~~~~~~ 467 (490)
T PRK10938 460 HHAEDAPA 467 (490)
T ss_pred cchhhhhh
Confidence 99887754
No 383
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.40 E-value=4.5e-06 Score=85.44 Aligned_cols=138 Identities=16% Similarity=0.208 Sum_probs=83.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCC-Cc--cccc-----------eEEEEecCCcc-------------cHHHHHH
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KT--QFVP-----------RIWVCTMSGQK-------------TAESIVK 113 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~-----------~~~v~~v~~~~-------------~~~~~~~ 113 (398)
..-..++|+|++|+|||||++.+..-... .. .++. .-.+.++.++. ...+...
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~ 426 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVE 426 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHH
Confidence 35678999999999999999999754110 00 0000 00111122211 1123445
Q ss_pred HHHHHcCCCCCCC------CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEE
Q 015891 114 RILKRLGVDDGTT------NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIIT 181 (398)
Q Consensus 114 ~il~~l~~~~~~~------~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiT 181 (398)
+.++.+++..... .....+++++++..+++.+..++-+++|||+. |.+..+.+...+. ...+.++|++
T Consensus 427 ~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~i 506 (547)
T PRK10522 427 KWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAI 506 (547)
T ss_pred HHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5666666553211 12357899999999999999999999999999 4444444333321 1236778888
Q ss_pred eCChHHHHHhcCCCceEEcC
Q 015891 182 SRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 182 TR~~~v~~~~~~~~~~~~l~ 201 (398)
||+.+.... .++++.++
T Consensus 507 tH~~~~~~~---~d~i~~l~ 523 (547)
T PRK10522 507 SHDDHYFIH---ADRLLEMR 523 (547)
T ss_pred EechHHHHh---CCEEEEEE
Confidence 888766554 34555553
No 384
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.39 E-value=3.9e-06 Score=88.48 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=83.1
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEE-----------------EecCCc-----------------c
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWV-----------------CTMSGQ-----------------K 106 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v-----------------~~v~~~-----------------~ 106 (398)
..-..++|+|++|+|||||++.+..-... ..+.+.+ .+++++ .
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p---~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~ 581 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQP---TGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD 581 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCC---CCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC
Confidence 45678999999999999999999664111 1111111 111111 1
Q ss_pred cHHHHHHHHHHHcCCCC-----------C-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC
Q 015891 107 TAESIVKRILKRLGVDD-----------G-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP 171 (398)
Q Consensus 107 ~~~~~~~~il~~l~~~~-----------~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~ 171 (398)
...+.+.+.++..+..+ . .......+++++++..+++.+-.++-++||||+. |.+..+.+.. ..
T Consensus 582 ~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~ 660 (711)
T TIGR00958 582 TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR 660 (711)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh
Confidence 11223334444433221 1 1112347889999999999999999999999999 4455555554 33
Q ss_pred CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 172 RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
..++.++|++||+.+.... .++++.++
T Consensus 661 ~~~~~TvIiItHrl~~i~~---aD~IivL~ 687 (711)
T TIGR00958 661 SRASRTVLLIAHRLSTVER---ADQILVLK 687 (711)
T ss_pred ccCCCeEEEEeccHHHHHh---CCEEEEEE
Confidence 3457788999998876654 35566663
No 385
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.39 E-value=5.8e-06 Score=76.46 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=50.4
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+.+++++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+...+..++ ++++.+
T Consensus 150 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~--d~v~~l 223 (264)
T PRK14243 150 LSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVS--DMTAFF 223 (264)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC--CEEEEE
Confidence 347899999999999999999999999998 4443334433332 122468999999988776653 344444
No 386
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.39 E-value=3.5e-06 Score=89.06 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=51.0
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
..+++++++..+++.+-.++-+++|||+. |....+.+...+.. .+.++|++||.......+ ++++.++
T Consensus 615 ~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~-~~~T~IiitHrl~~i~~~---D~Iivl~ 685 (710)
T TIGR03796 615 NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR-RGCTCIIVAHRLSTIRDC---DEIIVLE 685 (710)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhC---CEEEEEe
Confidence 47899999999999999999999999999 44444555545543 467888888887766543 5566663
No 387
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=6.4e-06 Score=76.04 Aligned_cols=63 Identities=8% Similarity=0.097 Sum_probs=47.3
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~ 192 (398)
..+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+.+.+..++
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~ 215 (261)
T PRK14263 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVA 215 (261)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC
Confidence 47889999999999999999999999998 4443333433333 123678999999998766543
No 388
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.39 E-value=5.9e-06 Score=76.09 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=50.2
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+.+||++||+...... .++++.+
T Consensus 156 ~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~---~dri~~l 227 (257)
T cd03288 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD---ADLVLVL 227 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh---CCEEEEE
Confidence 47889999999999999999999999998 4444444444433 2347899999999887764 2444444
No 389
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.38 E-value=1.2e-05 Score=79.03 Aligned_cols=157 Identities=15% Similarity=0.234 Sum_probs=88.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCcccc--ceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFV--PRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV 140 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~ 140 (398)
...+.|+|++|+|||+|++++++. +..... .++++. ...+...+...+... ..+ .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~-------~~~~~~~~~~~~~~~----------~~~----~ 192 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS-------SEKFTNDFVNALRNN----------KME----E 192 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE-------HHHHHHHHHHHHHcC----------CHH----H
Confidence 456899999999999999999887 333322 234443 223333444443211 111 2
Q ss_pred HHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeCC-hHHHHHh----c---CCCceEEcCCCCCh
Q 015891 141 LQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSRN-EKLTTEM----V---GEENLHQLQPLSDQ 206 (398)
Q Consensus 141 l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR~-~~v~~~~----~---~~~~~~~l~~L~~~ 206 (398)
+...+. +.-+|+|||++.. ...+.+...+. ...+..+|+||.. ......+ . .....+.+++.+.
T Consensus 193 ~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~- 270 (405)
T TIGR00362 193 FKEKYR-SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDL- 270 (405)
T ss_pred HHHHHH-hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCH-
Confidence 333333 2569999999832 22233333332 2345667777764 2222111 1 1234688888888
Q ss_pred hHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 207 ESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 207 e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
+....++.+.+...+...+ .+....|++.+.|....+.
T Consensus 271 ~~r~~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 271 ETRLAILQKKAEEEGLELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 6677777776554444333 3366777788877766543
No 390
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.38 E-value=2.9e-06 Score=87.70 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=51.3
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..++++.++-.+++.+-.++-++||||+. |.+..+.+...+. ..++.++|++||+......+ ++++.+
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~---D~ii~l 542 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNA---DRILVF 542 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhC---CEEEEE
Confidence 37889999999999999999999999999 4455555544443 23468899999988776543 455655
No 391
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.38 E-value=3.3e-06 Score=87.29 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=51.1
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
...+++++++-.+++++-.++-++||||+. |.+..+.+...+. ..++.++|++||..+.... .++++.++
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~---aD~Iivl~ 557 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ---WDQIWVMQ 557 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh---CCEEEEEe
Confidence 348999999999999999999999999999 4444444544443 2356778888887766554 35666663
No 392
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.37 E-value=2e-06 Score=77.35 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=83.7
Q ss_pred CCCCeeEEEEEcCCCChHHHHHHHHHcCCC------------------------CCcc----ccc-eEEEEe-cCCc---
Q 015891 59 TDDQFRAIGVVGVAGVGKTTLCQRIFHKPD------------------------VKTQ----FVP-RIWVCT-MSGQ--- 105 (398)
Q Consensus 59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~------------------------~~~~----F~~-~~~v~~-v~~~--- 105 (398)
..+..++.+|+|.+|+|||||.+.+..-.+ .+.+ |.. +.|-++ |..+
T Consensus 20 ~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~Y 99 (352)
T COG4148 20 TLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRY 99 (352)
T ss_pred cCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhh
Confidence 345678999999999999999999953210 0111 110 111110 1111
Q ss_pred ---ccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhHcCCCC
Q 015891 106 ---KTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKVLPRGY 174 (398)
Q Consensus 106 ---~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~l~~~~ 174 (398)
.....-+..+..-||+.+- ...+...+++++++..+.++|-.++-|+++|++-.. +.+-++... ...-
T Consensus 100 G~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL-~~e~ 178 (352)
T COG4148 100 GMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERL-RDEI 178 (352)
T ss_pred hhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHH-HHhc
Confidence 2234456778888887663 233455899999999999999999999999998722 222233222 2334
Q ss_pred CCEEEEEeCChHHHHHh
Q 015891 175 GERLIITSRNEKLTTEM 191 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~ 191 (398)
.--|+..||+.+-...+
T Consensus 179 ~IPIlYVSHS~~Ev~RL 195 (352)
T COG4148 179 NIPILYVSHSLDEVLRL 195 (352)
T ss_pred CCCEEEEecCHHHHHhh
Confidence 56799999987654444
No 393
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.37 E-value=3.1e-06 Score=86.32 Aligned_cols=121 Identities=16% Similarity=0.215 Sum_probs=75.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE----------------EEecCCcc-----------------c
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW----------------VCTMSGQK-----------------T 107 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~----------------v~~v~~~~-----------------~ 107 (398)
+.-..++|+|++|+|||||++.+..-. ....+.+. +.++.++. .
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~---~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~ 435 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL---DPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDA 435 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCC
Confidence 456789999999999999999997541 11111111 11122211 1
Q ss_pred HHHHHHHHHHHcCCCC---------C---CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891 108 AESIVKRILKRLGVDD---------G---TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP- 171 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~---------~---~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~- 171 (398)
..+-+.+.++..+..+ + .......+++++++-.+++.+-.++-++||||+. |.+..+.+...+.
T Consensus 436 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 436 TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1222334444433221 0 0112347899999999999999999999999999 4455555554543
Q ss_pred CCCCCEEEEEeCC
Q 015891 172 RGYGERLIITSRN 184 (398)
Q Consensus 172 ~~~gs~IIiTTR~ 184 (398)
..++.++|++||.
T Consensus 516 ~~~~~TvIiItHr 528 (529)
T TIGR02868 516 ALSGKTVVVITHH 528 (529)
T ss_pred hcCCCEEEEEecC
Confidence 3457788888875
No 394
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.37 E-value=6.2e-06 Score=76.13 Aligned_cols=167 Identities=13% Similarity=0.146 Sum_probs=84.2
Q ss_pred CCcccchhhHHHHHHHHhc---------c--CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891 38 ANVHGFANEELHLQKLLSN---------R--GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK 106 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~---------~--~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~ 106 (398)
..++|.+...+.|.+.... . ...+....+.++|++|+||||+|+.+++...-........++. ++.
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~-- 82 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER-- 82 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH--
Confidence 3578988887777654322 0 1223456788999999999999999976410000001111222 211
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----------HHHHHHHhHcCCCCC-
Q 015891 107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----------EVCKHLSKVLPRGYG- 175 (398)
Q Consensus 107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----------~~~~~l~~~l~~~~g- 175 (398)
..+.... ++ .........+.+. ...+|++||++.. +..+.+...+....+
T Consensus 83 --~~l~~~~---~g-----------~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~ 143 (261)
T TIGR02881 83 --ADLVGEY---IG-----------HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNE 143 (261)
T ss_pred --HHhhhhh---cc-----------chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCC
Confidence 1111100 00 1112222223222 2459999999842 233444444433333
Q ss_pred CEEEEEeCChHH---HH---HhcC-CCceEEcCCCCChhHHHHHHHhhhCCCCCcchHH
Q 015891 176 ERLIITSRNEKL---TT---EMVG-EENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQ 227 (398)
Q Consensus 176 s~IIiTTR~~~v---~~---~~~~-~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~ 227 (398)
..+|+++..... .. .+.. ....+.+++++. ++...++.+.+.......++.
T Consensus 144 ~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~-~el~~Il~~~~~~~~~~l~~~ 201 (261)
T TIGR02881 144 FVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTV-EELMEIAERMVKEREYKLTEE 201 (261)
T ss_pred EEEEecCCcchhHHHHhcChHHHhccceEEEECCCCH-HHHHHHHHHHHHHcCCccCHH
Confidence 345555543221 10 1111 135688999998 667888877665444334343
No 395
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3e-06 Score=83.76 Aligned_cols=138 Identities=15% Similarity=0.187 Sum_probs=87.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCC-CC----------------ccccceEEEEecC--------------CcccHH
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPD-VK----------------TQFVPRIWVCTMS--------------GQKTAE 109 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~-~~----------------~~F~~~~~v~~v~--------------~~~~~~ 109 (398)
..-..++|+|.+|+|||||+..+..-.. .. ..+....|+..-+ ......
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~ 424 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASD 424 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCH
Confidence 4567899999999999999999965311 00 1122345654111 011123
Q ss_pred HHHHHHHHHcCCCCC-----------CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCC
Q 015891 110 SIVKRILKRLGVDDG-----------TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGY 174 (398)
Q Consensus 110 ~~~~~il~~l~~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~ 174 (398)
+.+.+.+++.++.+- .......+.++.++..+++.+-+++-+++||+++ |.+..+.+...+. ...
T Consensus 425 e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~ 504 (559)
T COG4988 425 EEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK 504 (559)
T ss_pred HHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh
Confidence 334444444333221 0111227889999999999999999999999999 5555555554443 455
Q ss_pred CCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 175 GERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
+.++|+.||....+..+ ++++.++
T Consensus 505 ~ktvl~itHrl~~~~~~---D~I~vld 528 (559)
T COG4988 505 QKTVLVITHRLEDAADA---DRIVVLD 528 (559)
T ss_pred CCeEEEEEcChHHHhcC---CEEEEec
Confidence 68899999988887765 5566554
No 396
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.37 E-value=7.9e-06 Score=69.83 Aligned_cols=129 Identities=18% Similarity=0.204 Sum_probs=84.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCC-----C-------Cc-------cccc---eEEEEecCCc------------cc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPD-----V-------KT-------QFVP---RIWVCTMSGQ------------KT 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~-----~-------~~-------~F~~---~~~v~~v~~~------------~~ 107 (398)
.-..|++.|++|+|||||.+.++.-.. + .. -|.. .-|.+ +-.+ ..
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~-~~dNvafgL~l~Gi~k~~ 108 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLN-VIDNVAFGLQLRGIEKAQ 108 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhH-HHHHHHHHHHhcCCCHHH
Confidence 345788999999999999999864210 0 00 0111 12433 2211 12
Q ss_pred HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH------HHHHHHHhHcCCCCCCEEEE
Q 015891 108 AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM------EVCKHLSKVLPRGYGERLII 180 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~------~~~~~l~~~l~~~~gs~IIi 180 (398)
...+..+++...|+.... ......+++.+++.-++++|.-.+-+++||++... +..+.+.--++...|..+++
T Consensus 109 R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~ll 188 (259)
T COG4525 109 RREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL 188 (259)
T ss_pred HHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 234556677777877643 33455899999999999999999999999999832 33333332334455777899
Q ss_pred EeCChHHHHHh
Q 015891 181 TSRNEKLTTEM 191 (398)
Q Consensus 181 TTR~~~v~~~~ 191 (398)
+||+-+-+..+
T Consensus 189 iTH~ieEAlfl 199 (259)
T COG4525 189 ITHDIEEALFL 199 (259)
T ss_pred EeccHHHHHhh
Confidence 99998766654
No 397
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=8.4e-06 Score=83.38 Aligned_cols=193 Identities=13% Similarity=0.153 Sum_probs=104.6
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
+++||.+...+.|...+.. ..-...+.++|+.|+||||+|+.+++...-...... ..+..-.....+..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~---~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~--------~~c~~c~~c~~i~~ 84 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDT---GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA--------EPCNVCPPCVEITE 84 (576)
T ss_pred HHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC--------CCCCccHHHHHHhc
Confidence 6789999999999999864 223466789999999999999999876211111100 00000000001100
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEe-CChHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITS-RNEKLT 188 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTT-R~~~v~ 188 (398)
.-..+.......+..+.+..+. +...+ ..+.-++|+|+++ +....+.|...+.. ...+.+|++| ....+.
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~-l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRE-LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHH-HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 0000000000000112222222 22222 2345689999998 44555666666642 2355555544 445566
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDA 246 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 246 (398)
..+......+++.+++. +.....+...+...+...++ +.+..|++.++|-...+
T Consensus 164 ~tI~SRc~~~~f~~l~~-~~i~~~L~~i~~~egi~i~~---~al~~la~~a~G~lr~a 217 (576)
T PRK14965 164 ITILSRCQRFDFRRIPL-QKIVDRLRYIADQEGISISD---AALALVARKGDGSMRDS 217 (576)
T ss_pred HHHHHhhhhhhcCCCCH-HHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCCHHHH
Confidence 55545567889999998 55655565544443333222 25667888888866543
No 398
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.37 E-value=8.1e-05 Score=73.73 Aligned_cols=153 Identities=17% Similarity=0.226 Sum_probs=85.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQ 142 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 142 (398)
...+.|+|+.|+|||+|++++++. +......++++. ...+...+...+... . ...++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~-------~~~f~~~~~~~l~~~----------~----~~~f~ 197 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR-------SELFTEHLVSAIRSG----------E----MQRFR 197 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee-------HHHHHHHHHHHHhcc----------h----HHHHH
Confidence 356889999999999999999987 322222344444 223333444433211 1 11233
Q ss_pred HHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeCC-hH--------HHHHhcCCCceEEcCCCCChh
Q 015891 143 QQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSRN-EK--------LTTEMVGEENLHQLQPLSDQE 207 (398)
Q Consensus 143 ~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR~-~~--------v~~~~~~~~~~~~l~~L~~~e 207 (398)
..+ ...-+|++||+... ...+.+...+. ...|..||+||.. .. +...+ .....+++++++. +
T Consensus 198 ~~~-~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~-~~Gl~~~l~~pd~-e 274 (445)
T PRK12422 198 QFY-RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRF-EWGIAIPLHPLTK-E 274 (445)
T ss_pred HHc-ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhh-cCCeEEecCCCCH-H
Confidence 333 34679999998732 22233333332 2245678888854 22 12222 2246889999987 6
Q ss_pred HHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891 208 SCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE 244 (398)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 244 (398)
....++.+.....+...++ +...-|+..+.+.-.
T Consensus 275 ~r~~iL~~k~~~~~~~l~~---evl~~la~~~~~dir 308 (445)
T PRK12422 275 GLRSFLERKAEALSIRIEE---TALDFLIEALSSNVK 308 (445)
T ss_pred HHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHH
Confidence 6777777654433333333 245556666665443
No 399
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.36 E-value=3.9e-06 Score=81.16 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=85.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCC----------------------------CCccccceEEEEecC------Cc--
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPD----------------------------VKTQFVPRIWVCTMS------GQ-- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~----------------------------~~~~F~~~~~v~~v~------~~-- 105 (398)
.-.+-+|.|.+|.|||||++.+|.-.+ +.+||..+--++ +. ..
T Consensus 29 ~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lT-V~ENiiLg~e~~ 107 (501)
T COG3845 29 KGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLT-VAENIILGLEPS 107 (501)
T ss_pred CCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccc-hhhhhhhcCccc
Confidence 345789999999999999999975310 112332211111 11 11
Q ss_pred -------ccHHHHHHHHHHHcCCCCCCCCC-cCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhHcC--C
Q 015891 106 -------KTAESIVKRILKRLGVDDGTTNS-FEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKVLP--R 172 (398)
Q Consensus 106 -------~~~~~~~~~il~~l~~~~~~~~~-~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~--~ 172 (398)
....+-+..+.++.|++-+.... .+.+-+++++..+-+.|-...-+||||+++. +...+.|...+. .
T Consensus 108 ~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~ 187 (501)
T COG3845 108 KGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA 187 (501)
T ss_pred cccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 12345677788888887654332 3367788889999999999999999999993 444444444443 3
Q ss_pred CCCCEEEEEeCChHHHHHhcCC
Q 015891 173 GYGERLIITSRNEKLTTEMVGE 194 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~~~ 194 (398)
..|..||++||--+-...+++.
T Consensus 188 ~~G~tIi~ITHKL~Ev~~iaDr 209 (501)
T COG3845 188 AEGKTIIFITHKLKEVMAIADR 209 (501)
T ss_pred HCCCEEEEEeccHHHHHHhhCe
Confidence 5688888888875544444343
No 400
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.36 E-value=4e-06 Score=95.56 Aligned_cols=132 Identities=19% Similarity=0.165 Sum_probs=84.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc----------eEEEEecCCc------cc----------------
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP----------RIWVCTMSGQ------KT---------------- 107 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~----------~~~v~~v~~~------~~---------------- 107 (398)
-.+++|.|++|+|||||++.+........ .+.+ ...+.++.+. .+
T Consensus 1965 GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~ 2044 (2272)
T TIGR01257 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPA 2044 (2272)
T ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCH
Confidence 45899999999999999999976521100 0000 0001111111 01
Q ss_pred --HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEE
Q 015891 108 --AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLI 179 (398)
Q Consensus 108 --~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~II 179 (398)
..+....+++.+++.... ......+++++++..++.++..++-+++||++. |....+.+...+. ...|..||
T Consensus 2045 ~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TII 2124 (2272)
T TIGR01257 2045 EEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVV 2124 (2272)
T ss_pred HHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 112234566677775432 223348999999999999999999999999999 4444333333332 23478999
Q ss_pred EEeCChHHHHHhcCC
Q 015891 180 ITSRNEKLTTEMVGE 194 (398)
Q Consensus 180 iTTR~~~v~~~~~~~ 194 (398)
+|||+.+.+..+++.
T Consensus 2125 LtTH~mee~e~lcDr 2139 (2272)
T TIGR01257 2125 LTSHSMEECEALCTR 2139 (2272)
T ss_pred EEeCCHHHHHHhCCE
Confidence 999999888776544
No 401
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=6.2e-06 Score=76.32 Aligned_cols=65 Identities=11% Similarity=0.169 Sum_probs=48.5
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcC
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
...+.++.++..+.+.+..++-+++||++. |....+.+...+. ...+..||++||+.+.+..+++
T Consensus 160 ~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d 228 (265)
T PRK14252 160 FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSD 228 (265)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCC
Confidence 347889999999999999999999999998 4444444444443 1235789999999987766433
No 402
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.36 E-value=2.2e-06 Score=77.36 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=57.9
Q ss_pred HHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCCC--cEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 114 RILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGKR--YLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 114 ~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~--~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
+++..+++.. ........+.+++++..+.+.+...+ -++++|++. |....+.+...+. ...|..||++||+
T Consensus 119 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~ 198 (226)
T cd03270 119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD 198 (226)
T ss_pred HHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 3455566643 23344558899999999999998876 699999998 4443444433332 2347789999999
Q ss_pred hHHHHHhcCCCceEEcCC
Q 015891 185 EKLTTEMVGEENLHQLQP 202 (398)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~ 202 (398)
.+.+. + .++++.+.+
T Consensus 199 ~~~~~-~--~d~i~~l~~ 213 (226)
T cd03270 199 EDTIR-A--ADHVIDIGP 213 (226)
T ss_pred HHHHH-h--CCEEEEeCC
Confidence 98764 3 356666643
No 403
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.36 E-value=6.9e-06 Score=83.80 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=47.1
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHH
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~ 190 (398)
..+++++++..+.+.+-.++-+++|||+. |.+..+.+...+. ...+.++|++||+......
T Consensus 458 ~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ 522 (529)
T TIGR02857 458 GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAER 522 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 47899999999999999999999999998 4444444444443 2357888999998877654
No 404
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.35 E-value=4.4e-06 Score=88.02 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=50.9
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..+++++++-.+++.+-.++-++||||+. |.+..+.+...+. ..++.++|++||+.+....+ ++++.+
T Consensus 601 ~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~---D~iivl 672 (694)
T TIGR03375 601 SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLV---DRIIVM 672 (694)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhC---CEEEEE
Confidence 47899999999999999999999999998 4444444444443 23467888888888766543 555655
No 405
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.35 E-value=1.9e-05 Score=73.74 Aligned_cols=166 Identities=12% Similarity=0.169 Sum_probs=85.4
Q ss_pred CCcccchhhHHHHHHHHhc---------cC--CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891 38 ANVHGFANEELHLQKLLSN---------RG--TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK 106 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~---------~~--~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~ 106 (398)
..++|.+...++|.++... .+ ......-+.++|++|+||||+|+.++.............|+. ++.
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~-v~~-- 98 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS-VTR-- 98 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE-ecH--
Confidence 3588988887777664321 00 011233688999999999999987765411111111112333 331
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-----------HHHHHHHhHcC-CCC
Q 015891 107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-----------EVCKHLSKVLP-RGY 174 (398)
Q Consensus 107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-----------~~~~~l~~~l~-~~~ 174 (398)
..+... .++. ........+.+ ...-+|+|||+... +..+.|...+. ...
T Consensus 99 --~~l~~~---~~g~-----------~~~~~~~~~~~---a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~ 159 (284)
T TIGR02880 99 --DDLVGQ---YIGH-----------TAPKTKEILKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRD 159 (284)
T ss_pred --HHHhHh---hccc-----------chHHHHHHHHH---ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCC
Confidence 111111 1111 01111222222 23479999999722 23344444554 334
Q ss_pred CCEEEEEeCChHHHHHh-------cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchH
Q 015891 175 GERLIITSRNEKLTTEM-------VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKS 226 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~-------~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~ 226 (398)
+.+||+++.....-... ......+++++++. ++...++.+.+........+
T Consensus 160 ~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~-edl~~I~~~~l~~~~~~l~~ 217 (284)
T TIGR02880 160 DLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSE-AELLVIAGLMLKEQQYRFSA 217 (284)
T ss_pred CEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCH-HHHHHHHHHHHHHhccccCH
Confidence 55666666533221111 01146789999997 77888888766544433333
No 406
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.35 E-value=1.1e-05 Score=74.81 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=48.0
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~ 192 (398)
...+.+++++..+.+.+..++-+++||++. |......+...+. ...+..||++||+.+.+..++
T Consensus 166 ~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~ 233 (271)
T PRK14238 166 YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARIS 233 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhC
Confidence 347889999999999999999999999998 4444444443332 122578999999998776643
No 407
>CHL00181 cbbX CbbX; Provisional
Probab=98.34 E-value=2.2e-05 Score=73.31 Aligned_cols=166 Identities=14% Similarity=0.171 Sum_probs=86.0
Q ss_pred CCcccchhhHHHHHHHHhc---------cC--CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891 38 ANVHGFANEELHLQKLLSN---------RG--TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK 106 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~---------~~--~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~ 106 (398)
+.++|.+...++|.++... .+ .......+.++|++|+||||+|+.+++.......-...-|+. ++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-v~--- 98 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-VT--- 98 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-ec---
Confidence 3588988777766655321 00 112234588999999999999999976410001111112333 33
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-----------HHHHHHHhHcC-CCC
Q 015891 107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-----------EVCKHLSKVLP-RGY 174 (398)
Q Consensus 107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-----------~~~~~l~~~l~-~~~ 174 (398)
...+...+ .+.. .......+.+ ...-+|++|++... +..+.|...+. ...
T Consensus 99 -~~~l~~~~---~g~~-----------~~~~~~~l~~---a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~ 160 (287)
T CHL00181 99 -RDDLVGQY---IGHT-----------APKTKEVLKK---AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRD 160 (287)
T ss_pred -HHHHHHHH---hccc-----------hHHHHHHHHH---ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCC
Confidence 11121111 1110 1111222222 23469999999632 33444444443 334
Q ss_pred CCEEEEEeCChHHHHH------h-cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchH
Q 015891 175 GERLIITSRNEKLTTE------M-VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKS 226 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~------~-~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~ 226 (398)
+.+||+++........ + ......+++++++. ++...++.+.+........+
T Consensus 161 ~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~-~el~~I~~~~l~~~~~~l~~ 218 (287)
T CHL00181 161 DLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP-EELLQIAKIMLEEQQYQLTP 218 (287)
T ss_pred CEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH-HHHHHHHHHHHHHhcCCCCh
Confidence 5667777754332111 1 12256799999998 66777777765443333333
No 408
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.34 E-value=6.2e-06 Score=87.10 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=50.0
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..+++++++..+++++-.++-+++||+++ |.+..+.+...+....+.++|++||+...... .++++.+
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~---~D~i~~l 681 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQ---SDKIIVL 681 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHc---CCEEEEE
Confidence 47899999999999999999999999999 44444444444432246788888888876654 3556655
No 409
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.33 E-value=1.4e-05 Score=75.87 Aligned_cols=135 Identities=17% Similarity=0.258 Sum_probs=79.9
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
++++|.+...+.+..++.. ..-...+.++|++|+||||+|+.+++. .... ...+. .+. .. ...++..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~---~~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~-~~~-~~-~~~i~~~l~ 89 (316)
T PHA02544 21 DECILPAADKETFKSIVKK---GRIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVN-GSD-CR-IDFVRNRLT 89 (316)
T ss_pred HHhcCcHHHHHHHHHHHhc---CCCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEec-cCc-cc-HHHHHHHHH
Confidence 6789999999999999864 234567777999999999999999886 3222 22333 222 11 111111111
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHH--HhCCCcEEEecCCCCH---HHHHHHHhHcC-CCCCCEEEEEeCChH-HHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ--LIGKRYLIVLDDFEDM---EVCKHLSKVLP-RGYGERLIITSRNEK-LTTE 190 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVLDdv~~~---~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~~~ 190 (398)
.+ ... +...+.++|+||++.. +....+...+. ...++++|+||.... +...
T Consensus 90 ~~----------------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~ 147 (316)
T PHA02544 90 RF----------------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEP 147 (316)
T ss_pred HH----------------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHH
Confidence 10 000 1134678999999843 34445554444 345678888887543 2233
Q ss_pred hcCCCceEEcCCCCC
Q 015891 191 MVGEENLHQLQPLSD 205 (398)
Q Consensus 191 ~~~~~~~~~l~~L~~ 205 (398)
+......+.++..+.
T Consensus 148 l~sR~~~i~~~~p~~ 162 (316)
T PHA02544 148 LRSRCRVIDFGVPTK 162 (316)
T ss_pred HHhhceEEEeCCCCH
Confidence 333345677766665
No 410
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.33 E-value=2.4e-06 Score=83.25 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=89.2
Q ss_pred CCCCeeEEEEEcCCCChHHHHHHHHHcCCCC---------Ccccc---c--------eEEEE-e---cCCcccHHHHHHH
Q 015891 59 TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV---------KTQFV---P--------RIWVC-T---MSGQKTAESIVKR 114 (398)
Q Consensus 59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~---------~~~F~---~--------~~~v~-~---v~~~~~~~~~~~~ 114 (398)
.-+.-..|+++||+|+|||||.+.++.+..- ...|. - ..|.. + .-......+..+.
T Consensus 412 gid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ 491 (614)
T KOG0927|consen 412 GIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRS 491 (614)
T ss_pred ccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHH
Confidence 3355678999999999999999999766210 01111 0 00000 0 0011244567788
Q ss_pred HHHHcCCCCCCC--CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHH
Q 015891 115 ILKRLGVDDGTT--NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTT 189 (398)
Q Consensus 115 il~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~ 189 (398)
++..+|+..... +-...+.+++.+..+++.+-..+-|||||++. |.+..+.+...+..-+| .+|++|||..+..
T Consensus 492 ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~G-gvv~vSHDfrlI~ 570 (614)
T KOG0927|consen 492 ILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPG-GVVLVSHDFRLIS 570 (614)
T ss_pred HHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCC-ceeeeechhhHHH
Confidence 999999885432 22237888888888999999999999999999 45777777777764444 4888899977666
Q ss_pred Hh
Q 015891 190 EM 191 (398)
Q Consensus 190 ~~ 191 (398)
.+
T Consensus 571 qV 572 (614)
T KOG0927|consen 571 QV 572 (614)
T ss_pred HH
Confidence 54
No 411
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=8.4e-06 Score=74.75 Aligned_cols=63 Identities=11% Similarity=0.111 Sum_probs=47.8
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHh
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~ 191 (398)
...+.+++++..+.+.+..++-+++||++. |......+...+. ...+..||++||+......+
T Consensus 145 ~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~ 211 (250)
T PRK14266 145 LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRV 211 (250)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhh
Confidence 347889999999999999999999999999 4444444444443 12367899999998776664
No 412
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.31 E-value=1.3e-05 Score=81.94 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=50.8
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-C-CCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-R-GYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~-~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+++++++..+++.+-.++-++||||+. |.+..+.+...+. . ..+.++|++||+...... .++++.+
T Consensus 453 ~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~---~d~i~~l 526 (544)
T TIGR01842 453 ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGC---VDKILVL 526 (544)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh---CCEEEEE
Confidence 347899999999999999999999999999 4444444544443 2 246789999998876544 3455655
No 413
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.31 E-value=9.5e-06 Score=83.93 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=82.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccce-----------EEEEecCCcc----------------cHHH
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVPR-----------IWVCTMSGQK----------------TAES 110 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~-----------~~v~~v~~~~----------------~~~~ 110 (398)
..-..++|+|++|+|||||++.+..-..... .++.. -.+.++.++. ....
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~ 444 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEE 444 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHH
Confidence 4567899999999999999999965411100 01110 0011112210 0112
Q ss_pred HHHHHHHHcCCCC-----------C-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCC
Q 015891 111 IVKRILKRLGVDD-----------G-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGY 174 (398)
Q Consensus 111 ~~~~il~~l~~~~-----------~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~ 174 (398)
-+.+.++..++.. . .......++++.++-.+++.+-.++-+++||++. |.+..+.+...+. ...
T Consensus 445 ~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~ 524 (592)
T PRK10790 445 QVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE 524 (592)
T ss_pred HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC
Confidence 2334444443221 1 0112347889999999999999999999999999 4454445544443 234
Q ss_pred CCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 175 GERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
++++|++||+......+ ++++.+
T Consensus 525 ~~tvIivtHr~~~l~~~---D~ii~l 547 (592)
T PRK10790 525 HTTLVVIAHRLSTIVEA---DTILVL 547 (592)
T ss_pred CCEEEEEecchHHHHhC---CEEEEE
Confidence 67888888888766653 455555
No 414
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.31 E-value=5.5e-06 Score=88.26 Aligned_cols=152 Identities=16% Similarity=0.226 Sum_probs=84.8
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc------ccceEEEEecCCcccHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ------FVPRIWVCTMSGQKTAESI 111 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~------F~~~~~v~~v~~~~~~~~~ 111 (398)
++++||+.++.++.+.|.. ....-+.|+|++|+||||+|+.+++. +... ....+|..+++.-..
T Consensus 187 d~~iGr~~ei~~~i~~l~r----~~~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l~a---- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLR----RRQNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLLQA---- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhc----CCcCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhhhc----
Confidence 6799999999999998865 34445679999999999999999876 2211 112223221221000
Q ss_pred HHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHh-CCCcEEEecCCCCH----------HHHHHHHhHcCCCCCCEEEE
Q 015891 112 VKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLI-GKRYLIVLDDFEDM----------EVCKHLSKVLPRGYGERLII 180 (398)
Q Consensus 112 ~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVLDdv~~~----------~~~~~l~~~l~~~~gs~IIi 180 (398)
+.. ....-.+++...+..... .++.+|++|+++.. +....|.+.+..+ .-++|-
T Consensus 257 --------g~~------~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~Ig 321 (852)
T TIGR03345 257 --------GAS------VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIA 321 (852)
T ss_pred --------ccc------cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEE
Confidence 000 000111222223333222 46899999999843 2222444444333 355666
Q ss_pred EeCChHHH------HHhcCCCceEEcCCCCChhHHHHHHHh
Q 015891 181 TSRNEKLT------TEMVGEENLHQLQPLSDQESCWLIYRD 215 (398)
Q Consensus 181 TTR~~~v~------~~~~~~~~~~~l~~L~~~e~~~~l~~~ 215 (398)
+|...+.- ..+......+.+++++. ++...+++.
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~-~~~~~iL~~ 361 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDE-ETAIRMLRG 361 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCeEEEeCCCCH-HHHHHHHHH
Confidence 65543221 11122346899999998 556666543
No 415
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.8e-05 Score=81.29 Aligned_cols=196 Identities=13% Similarity=0.143 Sum_probs=106.6
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
++++|.+...+.|...+.. ..-...+.++|+.|+||||+|+.+.....-...-.. .-. +....+... +-.
T Consensus 17 ~~viGq~~~~~~L~~~i~~---~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~--~~~-Cg~C~sC~~----~~~ 86 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIAT---NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTAD--GEA-CNECESCVA----FNE 86 (614)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCC--CCC-CCcchHHHH----Hhc
Confidence 6789999999999999864 234566899999999999999998765210000000 000 000000000 000
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCCC-CCCEEEE-EeCChHHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPRG-YGERLII-TSRNEKLTT 189 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~-~gs~IIi-TTR~~~v~~ 189 (398)
.-..+.......+....+..+..+... +.+++-++|+|+++ +....+.|...+..- .++.+|+ |+....+..
T Consensus 87 ~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~ 166 (614)
T PRK14971 87 QRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILP 166 (614)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchH
Confidence 000000000000011122222222111 12346699999998 445566676676532 3455555 445555665
Q ss_pred HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
.+.....++++.+++. ++....+.+.+...+....+ +.+..|+..++|-...+.
T Consensus 167 tI~SRc~iv~f~~ls~-~ei~~~L~~ia~~egi~i~~---~al~~La~~s~gdlr~al 220 (614)
T PRK14971 167 TILSRCQIFDFNRIQV-ADIVNHLQYVASKEGITAEP---EALNVIAQKADGGMRDAL 220 (614)
T ss_pred HHHhhhheeecCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 5556678899999999 55666666655443333222 256778888888776543
No 416
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.30 E-value=4.1e-07 Score=77.86 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=58.5
Q ss_pred HHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CH---HHHHHHHhHcCCCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DM---EVCKHLSKVLPRGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~---~~~~~l~~~l~~~~gs~IIiTTR~ 184 (398)
+..++..+.+..-. .+....+++++.+..+++.|...|.+++||++. |+ ...+.+...+. ..|--|+||-|+
T Consensus 120 l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~-~rgiGvLITDHN 198 (243)
T COG1137 120 LDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK-DRGIGVLITDHN 198 (243)
T ss_pred HHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHH-hCCceEEEcccc
Confidence 45777777766532 333458999999999999999999999999998 44 33334433443 346679999998
Q ss_pred hHHHHHhcCCCce
Q 015891 185 EKLTTEMVGEENL 197 (398)
Q Consensus 185 ~~v~~~~~~~~~~ 197 (398)
-.-.-.+++...+
T Consensus 199 VREtL~i~dRaYI 211 (243)
T COG1137 199 VRETLDICDRAYI 211 (243)
T ss_pred HHHHHhhhheEEE
Confidence 6544444343333
No 417
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.30 E-value=6.7e-06 Score=86.55 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=49.2
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..+++++++-.+++++-.++-+++|||+. |....+.+...+... +.++|++||....... .++++.+
T Consensus 588 ~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~-~~T~IiItHr~~~i~~---~D~Iivl 657 (686)
T TIGR03797 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL-KVTRIVIAHRLSTIRN---ADRIYVL 657 (686)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-CCeEEEEecChHHHHc---CCEEEEE
Confidence 47899999999999999999999999999 444444554444322 4678888887766554 3555655
No 418
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=2.2e-05 Score=79.78 Aligned_cols=195 Identities=14% Similarity=0.111 Sum_probs=107.6
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
.+++|-+..++.|..++.. ..-...+.++|+.|+||||+|+.+++...-....... . +..-.+. ..+..
T Consensus 16 ~diiGqe~iv~~L~~~i~~---~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~---p-C~~C~~C----~~i~~ 84 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIES---NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPM---P-CGECSSC----KSIDN 84 (563)
T ss_pred HHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCC---C-CccchHH----HHHHc
Confidence 6789999999999999964 2345678999999999999999998872111110000 0 0000011 11111
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHH----HHhCCCcEEEecCCC--CHHHHHHHHhHcCCC-CCCEEEEEeCC-hHHHH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQ----QLIGKRYLIVLDDFE--DMEVCKHLSKVLPRG-YGERLIITSRN-EKLTT 189 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~-~gs~IIiTTR~-~~v~~ 189 (398)
.-...............+..+..... -..+++-++|+|+++ +....+.|...+..- ..+.+|++|.+ ..+..
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 00000000000001223333322211 123566799999998 445556666666532 34555555544 44544
Q ss_pred HhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 190 EMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
.+......+++.+++. ++....+.+.+...+...++ +.+..|++.++|-+..+.
T Consensus 165 tI~SRc~~~~f~~l~~-~el~~~L~~i~~~egi~id~---eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 165 TIKSRCQHFNFRLLSL-EKIYNMLKKVCLEDQIKYED---EALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHhceEEEecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHH
Confidence 4445567899999998 66666666654333333222 366678888888776544
No 419
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.29 E-value=8.6e-06 Score=74.32 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=43.2
Q ss_pred CCCchHHHHHHHHHHHh----CCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHH
Q 015891 130 EGQGLAFLDYVLQQQLI----GKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~----~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~ 190 (398)
..+.++.++..+.+.+. +.+-++++|++. |....+.+...+. ...++.||+||+...+...
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~ 226 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEV 226 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhh
Confidence 37888889999999885 357899999999 4444444444443 2237889999998776543
No 420
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.28 E-value=2.2e-05 Score=71.98 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=58.9
Q ss_pred HHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCC---CcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 115 ILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGK---RYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 115 il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k---~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
++..+++.. ........+.++.++..+.+.+..+ +-+++||++. |....+.+...+. ...|..||++||+
T Consensus 152 ~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~ 231 (261)
T cd03271 152 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231 (261)
T ss_pred HHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 455666654 2333445888999999999999875 6899999998 4444444444443 2347789999999
Q ss_pred hHHHHHhcCCCceEEcCC
Q 015891 185 EKLTTEMVGEENLHQLQP 202 (398)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~ 202 (398)
.++... .++++.+.|
T Consensus 232 ~~~i~~---aD~ii~Lgp 246 (261)
T cd03271 232 LDVIKC---ADWIIDLGP 246 (261)
T ss_pred HHHHHh---CCEEEEecC
Confidence 988753 356777754
No 421
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.28 E-value=1.1e-05 Score=83.26 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=49.8
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..++++.++-.+++.+-.++-+++|||+. |....+.+...+. ..++.++|++||+......+ ++++.+
T Consensus 476 ~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~---d~vi~l 547 (576)
T TIGR02204 476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKA---DRIVVM 547 (576)
T ss_pred cCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhC---CEEEEE
Confidence 37889999999999999999999999999 3444444433333 23578889999988776543 455555
No 422
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.28 E-value=1.2e-05 Score=82.82 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=38.0
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
++++|++..+..+...+.. .....+.|+|++|+||||||+.+++.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~----~~~~~vlL~Gp~GtGKTTLAr~i~~~ 198 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS----PFPQHIILYGPPGVGKTTAARLALEE 198 (615)
T ss_pred HhceeCcHHHHHHHHHHhc----CCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999988877743 34567999999999999999999876
No 423
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.28 E-value=5.2e-06 Score=72.96 Aligned_cols=70 Identities=11% Similarity=0.243 Sum_probs=51.5
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcCCCceEE
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVGEENLHQ 199 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~~~~~~~ 199 (398)
..++++++.-.+.++|..+|-|++||++. .+...+.+...+. ...|-+|+++-.+...+..+.+...+++
T Consensus 136 ~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle 211 (237)
T COG0410 136 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLE 211 (237)
T ss_pred CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEe
Confidence 47899999999999999999999999999 3433333333332 3346799999999998888654433333
No 424
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.28 E-value=2.7e-05 Score=65.03 Aligned_cols=135 Identities=16% Similarity=0.213 Sum_probs=83.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE----------------e---------------------cCCc
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC----------------T---------------------MSGQ 105 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~----------------~---------------------v~~~ 105 (398)
--.++|.||+|+|||||.++++.- +...-....|-. + +...
T Consensus 29 Ge~iaitGPSG~GKStllk~va~L--isp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~r 106 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASL--ISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNR 106 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhc--cCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhcc
Confidence 457899999999999999999764 222111111110 0 0011
Q ss_pred ccHHHHHHHHHHHcCCCCCCC--CCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH------HHHHH-HHhHcCCCCCC
Q 015891 106 KTAESIVKRILKRLGVDDGTT--NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM------EVCKH-LSKVLPRGYGE 176 (398)
Q Consensus 106 ~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~------~~~~~-l~~~l~~~~gs 176 (398)
.........++..+++..... ...+.++++.++..+.+-|.-.+.+++||++.+. ...+. +..++ .....
T Consensus 107 r~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v-~~q~v 185 (223)
T COG4619 107 RPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV-REQNV 185 (223)
T ss_pred CCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHh-hhhce
Confidence 112234455666666655322 2234889999999999999999999999999832 22222 22232 24567
Q ss_pred EEEEEeCChHHHHHhcCCCceEEcCC
Q 015891 177 RLIITSRNEKLTTEMVGEENLHQLQP 202 (398)
Q Consensus 177 ~IIiTTR~~~v~~~~~~~~~~~~l~~ 202 (398)
.|+-+||+++-+... .++.+.+.+
T Consensus 186 Av~WiTHd~dqa~rh--a~k~itl~~ 209 (223)
T COG4619 186 AVLWITHDKDQAIRH--ADKVITLQP 209 (223)
T ss_pred EEEEEecChHHHhhh--hheEEEecc
Confidence 899999998765443 244455444
No 425
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.28 E-value=1e-05 Score=79.49 Aligned_cols=177 Identities=13% Similarity=0.207 Sum_probs=100.4
Q ss_pred CCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891 38 ANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA 108 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~ 108 (398)
.++.|.+..+++|.+.+... -+-.....+.|+|++|+|||++|+++++. ....|- .+. .+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~fi---~V~-~se---- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATFL---RVV-GSE---- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCEE---EEe-cch----
Confidence 45789999999998877531 01234567889999999999999999997 443431 111 110
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHc---C-
Q 015891 109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVL---P- 171 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l---~- 171 (398)
+... .++ .........+.......+.+|+||+++.. +....+...+ .
T Consensus 253 --L~~k---~~G-----------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 253 --LIQK---YLG-----------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred --hhhh---hcc-----------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 1110 000 11122233344444567899999997622 1111111111 1
Q ss_pred --CCCCCEEEEEeCChHHHHHh-c---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891 172 --RGYGERLIITSRNEKLTTEM-V---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED 245 (398)
Q Consensus 172 --~~~gs~IIiTTR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 245 (398)
...+.+||+||+..+..... . ..+..+++++.+. ++...+|............. ....++..+.|+.-|
T Consensus 317 ~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~-~~R~~Il~~~~~k~~l~~dv----dl~~la~~t~g~sgA 391 (438)
T PTZ00361 317 FDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDE-KTKRRIFEIHTSKMTLAEDV----DLEEFIMAKDELSGA 391 (438)
T ss_pred hcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCH-HHHHHHHHHHHhcCCCCcCc----CHHHHHHhcCCCCHH
Confidence 23466888888876555432 1 2256788877776 67778887654332211111 345566677776654
No 426
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.27 E-value=7.2e-06 Score=80.67 Aligned_cols=130 Identities=17% Similarity=0.140 Sum_probs=81.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE---------------------------------------ec
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC---------------------------------------TM 102 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~---------------------------------------~v 102 (398)
.-.+.++.|.+|.|||||++.+..- + ....+.+|+. .-
T Consensus 33 ~GEV~aL~GeNGAGKSTLmKiLsGv--~-~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre 109 (500)
T COG1129 33 PGEVHALLGENGAGKSTLMKILSGV--Y-PPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGRE 109 (500)
T ss_pred CceEEEEecCCCCCHHHHHHHHhCc--c-cCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccc
Confidence 4678999999999999999999543 1 1111111111 00
Q ss_pred CCc-------ccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhHcC
Q 015891 103 SGQ-------KTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKVLP 171 (398)
Q Consensus 103 ~~~-------~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~ 171 (398)
... .........++..++.... ...-.+.+-.+++...+++.+..+.-+||||+++. ....+.|...+.
T Consensus 110 ~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir 189 (500)
T COG1129 110 PTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIR 189 (500)
T ss_pred cccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 000 1233455677787877422 22223478888999999999999989999999993 333333333333
Q ss_pred --CCCCCEEEEEeCChHHHHHhcCC
Q 015891 172 --RGYGERLIITSRNEKLTTEMVGE 194 (398)
Q Consensus 172 --~~~gs~IIiTTR~~~v~~~~~~~ 194 (398)
...|..||++||.-+-...+++.
T Consensus 190 ~Lk~~Gv~ii~ISHrl~Ei~~i~Dr 214 (500)
T COG1129 190 RLKAQGVAIIYISHRLDEVFEIADR 214 (500)
T ss_pred HHHhCCCEEEEEcCcHHHHHHhcCE
Confidence 45688899999876544444343
No 427
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.27 E-value=7.9e-07 Score=84.72 Aligned_cols=106 Identities=15% Similarity=0.124 Sum_probs=62.9
Q ss_pred HHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc--cHHHHHHHHHHHcCCCCCCCC
Q 015891 50 LQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK--TAESIVKRILKRLGVDDGTTN 127 (398)
Q Consensus 50 l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~--~~~~~~~~il~~l~~~~~~~~ 127 (398)
+.+++.. -..-...+|+|++|+|||||++.+++..... +|+..+|+. +.... ...++++.+...+-......+
T Consensus 159 vID~l~P---IGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~Vv-LIgER~~EVtdiqrsIlg~vv~st~d~~ 233 (416)
T PRK09376 159 IIDLIAP---IGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVL-LIDERPEEVTDMQRSVKGEVVASTFDEP 233 (416)
T ss_pred eeeeecc---cccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEE-EeCCchhHHHHHHHHhcCcEEEECCCCC
Confidence 4444443 3455678899999999999999999984333 799999998 66555 566667666532211111111
Q ss_pred CcCCCchHHHHHHHHHHH--hCCCcEEEecCCCCH
Q 015891 128 SFEGQGLAFLDYVLQQQL--IGKRYLIVLDDFEDM 160 (398)
Q Consensus 128 ~~~~~~~~~~~~~l~~~l--~~k~~LlVLDdv~~~ 160 (398)
...-..........++++ .++..+|++|+++..
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 000000001111222232 458999999999844
No 428
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=2.6e-05 Score=74.05 Aligned_cols=96 Identities=17% Similarity=0.216 Sum_probs=62.1
Q ss_pred CCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCCh-HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCC
Q 015891 147 GKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRNE-KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDA 222 (398)
Q Consensus 147 ~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~ 222 (398)
+++-++|+|+++ +....+.|...+-. ..++.+|+||++. .+...+......+.+.+++. +.+...+.+..+...
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~-~~~~~~L~~~~~~~~- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSN-EESLQWLQQALPESD- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCH-HHHHHHHHHhcccCC-
Confidence 345677889999 55666667666642 3467777777775 45555556677899999998 556655555432111
Q ss_pred cchHHHHHHHHHHHHhcCCCchhhhccC
Q 015891 223 QLKSQARKDLEEKLEKLQGQNEDAVNFP 250 (398)
Q Consensus 223 ~~~~~~~~~~~~I~~~c~GlPlai~~~a 250 (398)
.+.+..++..++|.|.....+.
T Consensus 183 ------~~~~~~~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 183 ------ERERIELLTLAGGSPLRALQLH 204 (328)
T ss_pred ------hHHHHHHHHHcCCCHHHHHHHH
Confidence 1134566788889887666554
No 429
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.27 E-value=7.2e-06 Score=69.13 Aligned_cols=81 Identities=11% Similarity=0.222 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 111 IVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 111 ~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
....++...|+.+.. ..+...+++++++..+++.|.-.+-.++||++++ ++..-.+...+. ...|-+.++.|+.
T Consensus 132 ~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHE 211 (256)
T COG4598 132 RAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211 (256)
T ss_pred HHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 345567777776543 3344589999999999999999999999999994 433222222221 2457788999999
Q ss_pred hHHHHHh
Q 015891 185 EKLTTEM 191 (398)
Q Consensus 185 ~~v~~~~ 191 (398)
..++...
T Consensus 212 M~FAR~V 218 (256)
T COG4598 212 MGFARDV 218 (256)
T ss_pred hhHHHhh
Confidence 9998876
No 430
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.26 E-value=9.4e-06 Score=80.95 Aligned_cols=164 Identities=12% Similarity=0.188 Sum_probs=89.5
Q ss_pred CCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-----ccceEEEEec
Q 015891 37 PANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-----FVPRIWVCTM 102 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-----F~~~~~v~~v 102 (398)
-+++.|.+..+++|.+.+... -.-...+-+.|+|++|+|||++|+++++. .... .....|+. +
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~-v 257 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLN-I 257 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEe-c
Confidence 366888999999998876420 01234567999999999999999999987 3322 12233443 3
Q ss_pred CCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHH-HhCCCcEEEecCCCCH----------H----HHHHHH
Q 015891 103 SGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQ-LIGKRYLIVLDDFEDM----------E----VCKHLS 167 (398)
Q Consensus 103 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVLDdv~~~----------~----~~~~l~ 167 (398)
.... ++...-.. ............+.. ..+++++|+|||++.. + .+..+.
T Consensus 258 ~~~e--------Ll~kyvGe-------te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL 322 (512)
T TIGR03689 258 KGPE--------LLNKYVGE-------TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLL 322 (512)
T ss_pred cchh--------hcccccch-------HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHH
Confidence 3210 11100000 000011111111111 1246899999999832 1 111222
Q ss_pred hHcC---CCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCC
Q 015891 168 KVLP---RGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRD 219 (398)
Q Consensus 168 ~~l~---~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~ 219 (398)
..+. ...+..||.||...+.... +. ..+..+++++.+. ++...+|++.+..
T Consensus 323 ~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~-e~r~~Il~~~l~~ 380 (512)
T TIGR03689 323 SELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA-EAAADIFSKYLTD 380 (512)
T ss_pred HHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCH-HHHHHHHHHHhhc
Confidence 2332 1234556667655543322 11 2255689988887 7788899887654
No 431
>CHL00176 ftsH cell division protein; Validated
Probab=98.26 E-value=2e-05 Score=81.15 Aligned_cols=178 Identities=16% Similarity=0.238 Sum_probs=100.7
Q ss_pred CCCCCcccchhhHHHHHHHHhccC--------CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891 35 KPPANVHGFANEELHLQKLLSNRG--------TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK 106 (398)
Q Consensus 35 ~~~~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~ 106 (398)
..-+++.|.++..+++.+.+..-. .....+-+.|+|++|+|||+||+++++. .... |+. ++..
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~-is~s- 250 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFS-ISGS- 250 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eee-ccHH-
Confidence 444678998887777776653210 1223567999999999999999999886 2222 222 2211
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHc---
Q 015891 107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVL--- 170 (398)
Q Consensus 107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l--- 170 (398)
.+.... .+ .........+.......+++|++||++.. ...+.+..++
T Consensus 251 ---~f~~~~---~g-----------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~ 313 (638)
T CHL00176 251 ---EFVEMF---VG-----------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEM 313 (638)
T ss_pred ---HHHHHh---hh-----------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhh
Confidence 111100 01 11223344566666678999999999632 1112222222
Q ss_pred C---CCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891 171 P---RGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN 243 (398)
Q Consensus 171 ~---~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 243 (398)
. ...+..||.||...+.... +. ..+..+.+.+.+. ++...+++......... + ......+++.+.|..
T Consensus 314 dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~-~~R~~IL~~~l~~~~~~--~--d~~l~~lA~~t~G~s 388 (638)
T CHL00176 314 DGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDR-EGRLDILKVHARNKKLS--P--DVSLELIARRTPGFS 388 (638)
T ss_pred ccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCH-HHHHHHHHHHHhhcccc--h--hHHHHHHHhcCCCCC
Confidence 2 2345567777776544332 11 1256778877666 66777777765542211 1 124566777777744
No 432
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.26 E-value=2.9e-05 Score=78.44 Aligned_cols=178 Identities=16% Similarity=0.199 Sum_probs=97.8
Q ss_pred CCCCCcccchhhHHHHHHHHhc--------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891 35 KPPANVHGFANEELHLQKLLSN--------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK 106 (398)
Q Consensus 35 ~~~~~~vGR~~~~~~l~~~L~~--------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~ 106 (398)
..-++++|.+...+++.+++.. .......+-+.++|++|+|||+||+.+++. ....| +. ++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~~-----~~-i~~-- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVPF-----FS-ISG-- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCe-----ee-ccH--
Confidence 3346789988877777665542 001234556999999999999999999987 22222 22 221
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHH---HHhHc
Q 015891 107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKH---LSKVL 170 (398)
Q Consensus 107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~---l~~~l 170 (398)
..+.... .+ .........+.......+.+|+|||++.. ..... +...+
T Consensus 122 --~~~~~~~---~g-----------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~ 185 (495)
T TIGR01241 122 --SDFVEMF---VG-----------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEM 185 (495)
T ss_pred --HHHHHHH---hc-----------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhh
Confidence 1111110 01 12233344555555677899999999632 11111 11112
Q ss_pred C---CCCCCEEEEEeCChHHHHH-h---cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891 171 P---RGYGERLIITSRNEKLTTE-M---VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN 243 (398)
Q Consensus 171 ~---~~~gs~IIiTTR~~~v~~~-~---~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 243 (398)
. ...+..||.||........ + ...+..++++..+. ++...+++..+.......+ .....+++.+.|..
T Consensus 186 d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~-~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 186 DGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDI-KGREEILKVHAKNKKLAPD----VDLKAVARRTPGFS 260 (495)
T ss_pred ccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCH-HHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCC
Confidence 1 2234556677765542221 1 12356788876665 6677777776544322211 13456777777755
No 433
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.26 E-value=1.1e-05 Score=83.08 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=51.0
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..+++++++-.+++.+..++-++||||+. |.+..+.+...+. ...+.+||++||+.+.... .++++.+
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~---~d~i~~l 542 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN---ADLVLFL 542 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc---CCEEEEE
Confidence 47899999999999999999999999999 4444444544443 2347789999998877654 3555555
No 434
>PLN03211 ABC transporter G-25; Provisional
Probab=98.26 E-value=7.7e-06 Score=85.05 Aligned_cols=124 Identities=16% Similarity=0.201 Sum_probs=79.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE-------------EEecCCc-----------------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW-------------VCTMSGQ----------------------- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~-------------v~~v~~~----------------------- 105 (398)
.-.+++|.|++|+|||||.+.+.....-. ...+.++ +.++.+.
T Consensus 93 ~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~ 171 (659)
T PLN03211 93 PGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPK 171 (659)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCC
Confidence 34689999999999999999998762110 0111111 1111111
Q ss_pred -cc---HHHHHHHHHHHcCCCCCC------CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891 106 -KT---AESIVKRILKRLGVDDGT------TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP- 171 (398)
Q Consensus 106 -~~---~~~~~~~il~~l~~~~~~------~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~- 171 (398)
.. ..+...++++.+++.... ......+++++++..+.+.+..++-+++||++. |......+...+.
T Consensus 172 ~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~ 251 (659)
T PLN03211 172 SLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGS 251 (659)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence 00 112345677778775421 112347899999999999999999999999999 4433333333332
Q ss_pred -CCCCCEEEEEeCChH
Q 015891 172 -RGYGERLIITSRNEK 186 (398)
Q Consensus 172 -~~~gs~IIiTTR~~~ 186 (398)
...|.+||+|||+..
T Consensus 252 l~~~g~TvI~~sH~~~ 267 (659)
T PLN03211 252 LAQKGKTIVTSMHQPS 267 (659)
T ss_pred HHhCCCEEEEEecCCC
Confidence 225789999999875
No 435
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.26 E-value=1.5e-05 Score=81.77 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=83.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-cc--ccc-----------eEEEEecCCc--------------ccHHHHH
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQ--FVP-----------RIWVCTMSGQ--------------KTAESIV 112 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~--F~~-----------~~~v~~v~~~--------------~~~~~~~ 112 (398)
..-..++|+|++|+|||||++.+..-.... .. ++. ...+..+.++ ....+..
T Consensus 366 ~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~ 445 (555)
T TIGR01194 366 AQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNA 445 (555)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHH
Confidence 456799999999999999999996531110 00 000 0001111111 0112334
Q ss_pred HHHHHHcCCCCCC-------CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH-cC--CCCCCEEE
Q 015891 113 KRILKRLGVDDGT-------TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV-LP--RGYGERLI 179 (398)
Q Consensus 113 ~~il~~l~~~~~~-------~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~-l~--~~~gs~II 179 (398)
.+.++.+++.... ......+++++++-.+.+.+-.++-++|||++. |.+..+.+... +. ...+.++|
T Consensus 446 ~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tii 525 (555)
T TIGR01194 446 QQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTII 525 (555)
T ss_pred HHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 5567776655321 112347899999999999999999999999999 44444444332 21 13477899
Q ss_pred EEeCChHHHHHhcCCCceEEc
Q 015891 180 ITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 180 iTTR~~~v~~~~~~~~~~~~l 200 (398)
++||+...... .++++.+
T Consensus 526 iisH~~~~~~~---~d~i~~l 543 (555)
T TIGR01194 526 IISHDDQYFEL---ADQIIKL 543 (555)
T ss_pred EEeccHHHHHh---CCEEEEE
Confidence 99998776543 3455555
No 436
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.25 E-value=9.9e-06 Score=85.34 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=51.0
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+++++++..+++.+..++-+++||++. |.+..+.+...+. ...+.++|++||+.+....+ ++++.+
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~---d~ii~l 664 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRAC---DRIIVL 664 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhC---CEEEEE
Confidence 348899999999999999999999999999 4444444444443 23567899999988776543 455555
No 437
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.24 E-value=2.5e-05 Score=71.68 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCCCC---------------------CCCCcCCCchHHHHHHHHHHHh----CCCcEEEecCCC---CHH
Q 015891 110 SIVKRILKRLGVDDG---------------------TTNSFEGQGLAFLDYVLQQQLI----GKRYLIVLDDFE---DME 161 (398)
Q Consensus 110 ~~~~~il~~l~~~~~---------------------~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVLDdv~---~~~ 161 (398)
+....+++.+++... .......+.+++++..+.+.+. ..+-++++|++. |..
T Consensus 125 ~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~ 204 (251)
T cd03273 125 QRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLS 204 (251)
T ss_pred HHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHH
Confidence 456667788877521 1223347888888889998886 566899999999 444
Q ss_pred HHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 162 VCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 162 ~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
..+.+...+. ...|..||++||..++...+ ++++.+.
T Consensus 205 ~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~---d~v~~~~ 242 (251)
T cd03273 205 HTQNIGRMIKTHFKGSQFIVVSLKEGMFNNA---NVLFRTR 242 (251)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHhC---CEEEEEE
Confidence 4444444433 23467899999998776643 4556554
No 438
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=2.2e-05 Score=74.17 Aligned_cols=196 Identities=18% Similarity=0.180 Sum_probs=108.8
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC-------------CccccceEEEEecCC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV-------------KTQFVPRIWVCTMSG 104 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-------------~~~F~~~~~v~~v~~ 104 (398)
++++|.+...+.+...+.. ..-...+.++|+.|+||+++|..+++...- ...++...|+.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~---~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~ 80 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQ---NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ 80 (314)
T ss_pred HHhCCHHHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccc
Confidence 4689999999999999964 223578999999999999999888654110 112233344431100
Q ss_pred cccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHh-----CCCcEEEecCCC--CHHHHHHHHhHcCCCCCCE
Q 015891 105 QKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLI-----GKRYLIVLDDFE--DMEVCKHLSKVLPRGYGER 177 (398)
Q Consensus 105 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVLDdv~--~~~~~~~l~~~l~~~~gs~ 177 (398)
..-...-...+...+....... .-..++.+ .+.+.+. +++-++|+|+++ +....+.|...+-.-+.+.
T Consensus 81 -~~g~~~~~~~~~~~~~~~~~~~---~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~ 155 (314)
T PRK07399 81 -HQGKLITASEAEEAGLKRKAPP---QIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGT 155 (314)
T ss_pred -ccccccchhhhhhccccccccc---cCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCe
Confidence 0000000111111221111000 11223322 2333332 456799999998 4455666666664223455
Q ss_pred EEEEeCC-hHHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 178 LIITSRN-EKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 178 IIiTTR~-~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
+|++|.+ ..+...+......+++.+++. ++....+.+........ . ....++..++|-|.....
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~-~~~~~~L~~~~~~~~~~--~----~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSD-EQLEQVLKRLGDEEILN--I----NFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCH-HHHHHHHHHhhccccch--h----HHHHHHHHcCCCHHHHHH
Confidence 6655544 456666666788999999999 66766666643221111 0 134566777777765443
No 439
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.24 E-value=1.5e-05 Score=81.95 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=49.6
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..+++++++..+++.+..++-+++|||+. |.+..+.+...+. ...+.++|++||+...... .++++.+
T Consensus 451 ~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~---~d~i~~l 522 (569)
T PRK10789 451 MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTE---ASEILVM 522 (569)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHc---CCEEEEE
Confidence 47889999999999999999999999999 4444444444443 2356788888888766554 3455555
No 440
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.23 E-value=2.9e-06 Score=70.01 Aligned_cols=94 Identities=20% Similarity=0.261 Sum_probs=62.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE-----------------ecCCc------c-----cHHHHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC-----------------TMSGQ------K-----TAESIVKR 114 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~-----------------~v~~~------~-----~~~~~~~~ 114 (398)
-.+++|+|++|+|||||++.++... .. ....+++. ++.+. . ........
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~--~~-~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~ 87 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL--PP-DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEE 87 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS--HE-SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHH
T ss_pred CCEEEEEccCCCccccceeeecccc--cc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4689999999999999999997652 11 11111111 01111 1 12335666
Q ss_pred HHHHcCCCCCCCC-----CcCCCchHHHHHHHHHHHhCCCcEEEecCCCC
Q 015891 115 ILKRLGVDDGTTN-----SFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED 159 (398)
Q Consensus 115 il~~l~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~ 159 (398)
++..++....... ....+.+++++..+.+.+..++-+++|||+.+
T Consensus 88 ~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 88 VLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 7777765542111 13488999999999999999999999999863
No 441
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.23 E-value=6.9e-06 Score=72.85 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=45.5
Q ss_pred CCchHHHH------HHHHHHHhCCCcEEEecCCC---CHHHHH-HHHhHcC--CCC-CCEEEEEeCChHHHHHhcCCCce
Q 015891 131 GQGLAFLD------YVLQQQLIGKRYLIVLDDFE---DMEVCK-HLSKVLP--RGY-GERLIITSRNEKLTTEMVGEENL 197 (398)
Q Consensus 131 ~~~~~~~~------~~l~~~l~~k~~LlVLDdv~---~~~~~~-~l~~~l~--~~~-gs~IIiTTR~~~v~~~~~~~~~~ 197 (398)
.+.++.++ ..+.+.+..++-+++||++. |....+ .+...+. ... +..||++||+.+.... .+++
T Consensus 116 LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~---~d~i 192 (204)
T cd03240 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA---ADHI 192 (204)
T ss_pred cCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh---CCEE
Confidence 56666654 45777888899999999999 444444 4444443 222 6789999999887653 3456
Q ss_pred EEcC
Q 015891 198 HQLQ 201 (398)
Q Consensus 198 ~~l~ 201 (398)
+.+.
T Consensus 193 ~~l~ 196 (204)
T cd03240 193 YRVE 196 (204)
T ss_pred EEEe
Confidence 6554
No 442
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.22 E-value=1.4e-05 Score=71.25 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=41.0
Q ss_pred CCchHHHHHHHHHHHh----CCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHH
Q 015891 131 GQGLAFLDYVLQQQLI----GKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 131 ~~~~~~~~~~l~~~l~----~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~ 190 (398)
.+.+++++..+.+.+. +.+-++++|++. |....+.+...+. ...+.++|++|++..+...
T Consensus 128 lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~ 195 (212)
T cd03274 128 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFEL 195 (212)
T ss_pred cCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHh
Confidence 6777888888888774 346899999998 4545555554443 2345677888887766553
No 443
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.20 E-value=8.7e-06 Score=84.85 Aligned_cols=129 Identities=18% Similarity=0.238 Sum_probs=83.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc------------------ceEEEEecC---Cccc----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV------------------PRIWVCTMS---GQKT---------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~------------------~~~~v~~v~---~~~~---------- 107 (398)
.-..++|.|++|+|||||++.+....... . .|+ ...++..-. ...+
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 112 (648)
T PRK10535 33 AGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAV 112 (648)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHH
Confidence 45689999999999999999997652110 0 000 111111000 0001
Q ss_pred --------HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891 108 --------AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG 173 (398)
Q Consensus 108 --------~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~ 173 (398)
..+...++++.+++.... ......+.++.++..+.+.+..++-++++|++. |....+.+...+. ..
T Consensus 113 ~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~ 192 (648)
T PRK10535 113 YAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD 192 (648)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 112335566777765432 223348899999999999999999999999998 5544444444443 23
Q ss_pred CCCEEEEEeCChHHHHH
Q 015891 174 YGERLIITSRNEKLTTE 190 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~ 190 (398)
.+..||++||+.+.+..
T Consensus 193 ~g~tilivsH~~~~~~~ 209 (648)
T PRK10535 193 RGHTVIIVTHDPQVAAQ 209 (648)
T ss_pred cCCEEEEECCCHHHHHh
Confidence 47899999999988764
No 444
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.20 E-value=2.1e-05 Score=65.96 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCCCCCC--CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CH----HHHHHHHhHcCCCCCCEEE
Q 015891 109 ESIVKRILKRLGVDDGTT--NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DM----EVCKHLSKVLPRGYGERLI 179 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~----~~~~~l~~~l~~~~gs~II 179 (398)
.......++...+..... .+...+++.+++-.+++-|-..+-|+++|++. |. ..++.+.... ..-+-.++
T Consensus 128 R~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv-~~l~la~v 206 (258)
T COG4107 128 RAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV-RELGLAVV 206 (258)
T ss_pred HHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHH-HhcCceEE
Confidence 334456666665554322 23336888888999999999999999999998 32 2233333222 34577899
Q ss_pred EEeCChHHHHHhc
Q 015891 180 ITSRNEKLTTEMV 192 (398)
Q Consensus 180 iTTR~~~v~~~~~ 192 (398)
|.|||-.|+....
T Consensus 207 iVTHDl~VarLla 219 (258)
T COG4107 207 IVTHDLAVARLLA 219 (258)
T ss_pred EEechhHHHHHhh
Confidence 9999999988763
No 445
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.20 E-value=2.5e-05 Score=65.31 Aligned_cols=138 Identities=15% Similarity=0.203 Sum_probs=90.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCC--------------------------------------
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSG-------------------------------------- 104 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~-------------------------------------- 104 (398)
-..+++.|++|+|||||.+.+|.+ +... .+.+|+.....
T Consensus 37 GECvvL~G~SG~GKStllr~LYaN--Y~~d-~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdV 113 (235)
T COG4778 37 GECVVLHGPSGSGKSTLLRSLYAN--YLPD-EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDV 113 (235)
T ss_pred ccEEEeeCCCCCcHHHHHHHHHhc--cCCC-CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHH
Confidence 457899999999999999999987 2221 23344321110
Q ss_pred -----------cccHHHHHHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHh
Q 015891 105 -----------QKTAESIVKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSK 168 (398)
Q Consensus 105 -----------~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~ 168 (398)
..........++..|.+++. ...+...+++++++..+.+-+.-.--+++||++.. ..-......
T Consensus 114 vaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVve 193 (235)
T COG4778 114 VAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE 193 (235)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHH
Confidence 00112234567777776652 34455578899999999998887778889999982 211122222
Q ss_pred HcC--CCCCCEEEEEeCChHHHHHhcCCCceEEcCCCCC
Q 015891 169 VLP--RGYGERLIITSRNEKLTTEMVGEENLHQLQPLSD 205 (398)
Q Consensus 169 ~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~L~~ 205 (398)
.+. ...|+.+|=+-||+.+-... .++.+.+.+.+.
T Consensus 194 li~e~Ka~GaAlvGIFHDeevre~v--adR~~~~~~~~~ 230 (235)
T COG4778 194 LIREAKARGAALVGIFHDEEVREAV--ADRLLDVSAFSP 230 (235)
T ss_pred HHHHHHhcCceEEEeeccHHHHHHH--hhheeecccCCc
Confidence 332 45689999999999888775 356677776554
No 446
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.19 E-value=1.6e-05 Score=70.97 Aligned_cols=62 Identities=18% Similarity=0.088 Sum_probs=44.5
Q ss_pred CCCchHHHHHHHHHHHhC----------CCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHh
Q 015891 130 EGQGLAFLDYVLQQQLIG----------KRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~----------k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~ 191 (398)
..+.++.++..+.+.+.. .+-+++||++. |....+.+...+. ...+..||++||+.+....+
T Consensus 123 ~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~ 199 (213)
T cd03279 123 TLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERI 199 (213)
T ss_pred ccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhh
Confidence 468888888899888863 45799999998 4444444444433 22377899999999877665
No 447
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.19 E-value=1.5e-05 Score=73.05 Aligned_cols=130 Identities=14% Similarity=0.134 Sum_probs=85.1
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCC----------------------------C---CCccccceEEEEecCC-----
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKP----------------------------D---VKTQFVPRIWVCTMSG----- 104 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~----------------------------~---~~~~F~~~~~v~~v~~----- 104 (398)
..-.+..|-|.+|+|||||++++-.-. + +..+|...-|-+ +-+
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt-Vl~Nv~fG 130 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT-VLENVAFG 130 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh-Hhhhhhcc
Confidence 345688999999999999999983210 0 111222222222 111
Q ss_pred -------cccHHHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhH
Q 015891 105 -------QKTAESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKV 169 (398)
Q Consensus 105 -------~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~ 169 (398)
.....+...+.++..|+..... .+.+.+++.+++.-++++|...+-++++|++.+. +..+.|..+
T Consensus 131 Lev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~L 210 (386)
T COG4175 131 LEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL 210 (386)
T ss_pred eeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHH
Confidence 1123455667777888876533 3445899999999999999999999999999843 222222222
Q ss_pred cCCCCCCEEEEEeCChHHHHHhc
Q 015891 170 LPRGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 170 l~~~~gs~IIiTTR~~~v~~~~~ 192 (398)
- ..-+-+|+++|||-+-+-.+.
T Consensus 211 q-~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 211 Q-AKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred H-HHhCCeEEEEecCHHHHHhcc
Confidence 1 223668999999988777663
No 448
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.17 E-value=1.6e-05 Score=82.39 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=79.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE--------------ecCCc---------------------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC--------------TMSGQ--------------------- 105 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~--------------~v~~~--------------------- 105 (398)
..-.+++|.|++|+|||||.+.+...........+.+++. ++.+.
T Consensus 49 ~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 128 (617)
T TIGR00955 49 KPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRM 128 (617)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCC
Confidence 3456999999999999999999987622110111111111 01110
Q ss_pred ------ccHHHHHHHHHHHcCCCCCCCCC-------cCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhH
Q 015891 106 ------KTAESIVKRILKRLGVDDGTTNS-------FEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKV 169 (398)
Q Consensus 106 ------~~~~~~~~~il~~l~~~~~~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~ 169 (398)
.........+++.+++....... ...+++++++..+.+.+..++-+++|||+.+ ......+...
T Consensus 129 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~ 208 (617)
T TIGR00955 129 PRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQV 208 (617)
T ss_pred CCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHH
Confidence 00122456778888775432221 2378999999999999999999999999993 3222233223
Q ss_pred cC--CCCCCEEEEEeCChH
Q 015891 170 LP--RGYGERLIITSRNEK 186 (398)
Q Consensus 170 l~--~~~gs~IIiTTR~~~ 186 (398)
+. ...|.+||+|+|+..
T Consensus 209 L~~l~~~g~tvi~~~hq~~ 227 (617)
T TIGR00955 209 LKGLAQKGKTIICTIHQPS 227 (617)
T ss_pred HHHHHhCCCEEEEEeCCCC
Confidence 22 224788999999863
No 449
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.16 E-value=6e-05 Score=69.50 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=67.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcC-CCCCCC-CCcC-CCchHHH
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLG-VDDGTT-NSFE-GQGLAFL 137 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~-~~~~~~-~~~~-~~~~~~~ 137 (398)
.....++|+|++|+|||||++.+... +.. ....+++. ...........++..... ...... ...+ ..+..+.
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~--~~~-~~G~i~~~--g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARI--LST-GISQLGLR--GKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCc--cCC-CCceEEEC--CEEeecchhHHHHHHHhcccccccccccccccccchHH
Confidence 34578999999999999999999987 332 23333432 111110001122222221 111110 0001 1111222
Q ss_pred HHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891 138 DYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 138 ~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~ 190 (398)
...........+-++++|++...+....+...+. .|..+|+|||+..+...
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~--~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH--AGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh--CCCEEEEEechhHHHHH
Confidence 2233333346899999999998766555554442 47899999998766443
No 450
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.16 E-value=2.7e-05 Score=68.69 Aligned_cols=133 Identities=15% Similarity=0.130 Sum_probs=75.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHcCC--CC-----C---------ccccceEEEEecCC-----c-c-c-HHHHHHHHHHHc
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHKP--DV-----K---------TQFVPRIWVCTMSG-----Q-K-T-AESIVKRILKRL 119 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~~--~~-----~---------~~F~~~~~v~~v~~-----~-~-~-~~~~~~~il~~l 119 (398)
.+.+|+|++|+|||||..+++.-. .. . ......+.+. +.. . . . ......++++.
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~- 99 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVT-LKNQGLDANPLCVLSQDMARSFLTS- 99 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEE-EEcCCccCCcCCHHHHHHHHHHhcc-
Confidence 467899999999999999986310 00 0 0011122222 111 0 1 1 11233344444
Q ss_pred CCCCCCCCCcCCCchHHHHHHHHHHH----hCCCcEEEecCCC---CHHHH----HHHHhHcCC-CCCCEEEEEeCChHH
Q 015891 120 GVDDGTTNSFEGQGLAFLDYVLQQQL----IGKRYLIVLDDFE---DMEVC----KHLSKVLPR-GYGERLIITSRNEKL 187 (398)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVLDdv~---~~~~~----~~l~~~l~~-~~gs~IIiTTR~~~v 187 (398)
...........+.+++++..+...+ ...+-+++||++. |.... +.+...... ..+..||++|++...
T Consensus 100 -~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~ 178 (198)
T cd03276 100 -NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG 178 (198)
T ss_pred -ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc
Confidence 1111223334788888888888888 4799999999998 33322 333333222 124579999998876
Q ss_pred HHHhcCCCceEEc
Q 015891 188 TTEMVGEENLHQL 200 (398)
Q Consensus 188 ~~~~~~~~~~~~l 200 (398)
+..+ +...++++
T Consensus 179 i~~~-d~v~~~~~ 190 (198)
T cd03276 179 LASS-DDVKVFRM 190 (198)
T ss_pred cccc-cceeEEEe
Confidence 6654 44445544
No 451
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.14 E-value=2.1e-05 Score=74.44 Aligned_cols=102 Identities=11% Similarity=0.181 Sum_probs=72.2
Q ss_pred HHHHHHHcCCCCCCC----CCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhHcCCCCCCEEEE
Q 015891 112 VKRILKRLGVDDGTT----NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKVLPRGYGERLII 180 (398)
Q Consensus 112 ~~~il~~l~~~~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~l~~~~gs~IIi 180 (398)
..++++..|+..+.. .+.+.+++++++.+++-+|.+++-|+|-|+++.. ..++.+.. +....|-.+++
T Consensus 135 ~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~-Lq~~~gMa~lf 213 (534)
T COG4172 135 ALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKE-LQAELGMAILF 213 (534)
T ss_pred HHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHH-HHHHhCcEEEE
Confidence 345677777776532 3445899999999999999999999999999843 33333332 22445889999
Q ss_pred EeCChHHHHHhcCCCceEEcCCCCChhHHHHHHH
Q 015891 181 TSRNEKLTTEMVGEENLHQLQPLSDQESCWLIYR 214 (398)
Q Consensus 181 TTR~~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~ 214 (398)
+|||-.+...+.+...++.-+.+-+...+..+|.
T Consensus 214 ITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~ 247 (534)
T COG4172 214 ITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247 (534)
T ss_pred EeccHHHHHHhhhhEEEEeccEEeecCcHHHHhh
Confidence 9999998888765555555555555455666664
No 452
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.13 E-value=5.7e-06 Score=79.29 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=61.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCc--ccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHH
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQ--KTAESIVKRILKRLGVDDGTTNSFEGQGLAFLD 138 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 138 (398)
..-..++|+|++|+|||||++.+++.... .+|+..+|+. +..+ ....++++.++..+-......+...........
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~Vl-LIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVL-LIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEE-EcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 45567999999999999999999998322 2599899998 5544 678888888854432222111110000111111
Q ss_pred HHHHHH--HhCCCcEEEecCCCCH
Q 015891 139 YVLQQQ--LIGKRYLIVLDDFEDM 160 (398)
Q Consensus 139 ~~l~~~--l~~k~~LlVLDdv~~~ 160 (398)
....+. -.+++.+|++|+++..
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 112222 2468999999999854
No 453
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.13 E-value=3.4e-05 Score=63.93 Aligned_cols=132 Identities=15% Similarity=0.274 Sum_probs=84.5
Q ss_pred CCCCeeEEEEEcCCCChHHHHHHHHH--cCCC------CCccccc-----------------------eEEEEecC----
Q 015891 59 TDDQFRAIGVVGVAGVGKTTLCQRIF--HKPD------VKTQFVP-----------------------RIWVCTMS---- 103 (398)
Q Consensus 59 ~~~~~~~v~I~G~~GiGKTtLa~~v~--~~~~------~~~~F~~-----------------------~~~v~~v~---- 103 (398)
+...--.+.+.||+|.|||+|.+.+- .-++ ...+|+. ..|-+ +.
T Consensus 24 ~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwph-ltv~en 102 (242)
T COG4161 24 DCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPH-LTVQEN 102 (242)
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCch-hHHHHH
Confidence 33456678999999999999999772 1100 0122321 23332 11
Q ss_pred -----------CcccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHh
Q 015891 104 -----------GQKTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSK 168 (398)
Q Consensus 104 -----------~~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~ 168 (398)
..........++++.+.+... +..+...+++++++..+++.|.-++-+++||++. |++....+..
T Consensus 103 lieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~ 182 (242)
T COG4161 103 LIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182 (242)
T ss_pred HHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHH
Confidence 011222334567777776653 2334558999999999999999999999999998 5543333333
Q ss_pred HcC--CCCCCEEEEEeCChHHHHHh
Q 015891 169 VLP--RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 169 ~l~--~~~gs~IIiTTR~~~v~~~~ 191 (398)
.+. .+.|-+=+|.|+.-+++...
T Consensus 183 iikel~~tgitqvivthev~va~k~ 207 (242)
T COG4161 183 IIKELAETGITQVIVTHEVEVARKT 207 (242)
T ss_pred HHHHHHhcCceEEEEEeehhHHHhh
Confidence 332 34576778888888888875
No 454
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.11 E-value=8.7e-06 Score=66.42 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHHcC
Q 015891 66 IGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 66 v~I~G~~GiGKTtLa~~v~~~ 86 (398)
|.|+|++|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999998
No 455
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.11 E-value=4.7e-05 Score=69.67 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=42.8
Q ss_pred CCCchHHHHHHHHHHHhC----CCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHH
Q 015891 130 EGQGLAFLDYVLQQQLIG----KRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~----k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~ 190 (398)
..+.+++++..+.+.+.. .+-+++||++. |....+.+...+. ...|..||++||+..+...
T Consensus 155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~ 224 (247)
T cd03275 155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSK 224 (247)
T ss_pred HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhh
Confidence 367788888888888864 47899999999 4443344433332 2237889999999887654
No 456
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.10 E-value=4.1e-05 Score=62.55 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+.|+|++|+||||+++.++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc
Confidence 357899999999999999999988
No 457
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.10 E-value=1.9e-05 Score=67.34 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=67.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHcCC-----CC--CccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHH
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHKP-----DV--KTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAF 136 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~~-----~~--~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 136 (398)
+...|+|++|.|||++++.+.--. .. .......+.+..++-.. +... ...+.++.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------i~~~----------~~lS~G~~ 83 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL--------IFTR----------LQLSGGEK 83 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE--------ehhe----------eeccccHH
Confidence 689999999999999999873210 00 00000111111000000 1111 11355677
Q ss_pred HHHHHHHHHhC----CCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceEEcCC
Q 015891 137 LDYVLQQQLIG----KRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLHQLQP 202 (398)
Q Consensus 137 ~~~~l~~~l~~----k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~~ 202 (398)
.+..+.+.+.. ++.++++|++. |......+...+. ...++.+|+|||+.++.... ++.+.+.+
T Consensus 84 ~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~---d~~~~l~~ 155 (162)
T cd03227 84 ELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELA---DKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhh---hhEEEEEE
Confidence 77888888864 67999999998 3333333322221 11278999999999887653 44555543
No 458
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.10 E-value=1e-05 Score=70.66 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=59.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHH
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQ 144 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (398)
++.|+|++|.||||+++.+.-.. +-.+ ..+++. ... ..-.....++..++..+.... ..+........+...
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~--~G~~v~-a~~--~~~~~~d~il~~~~~~d~~~~--~~s~fs~~~~~l~~~ 72 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQ--IGSFVP-AES--AELPVFDRIFTRIGASDSLAQ--GLSTFMVEMKETANI 72 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHH--hCCCee-ehh--eEecccceEEEEeCCCCchhc--cccHHHHHHHHHHHH
Confidence 36799999999999999996321 0000 001111 000 000001111122222211111 112333334456666
Q ss_pred HhC--CCcEEEecCCC---CHHHHHH----HHhHcCCCCCCEEEEEeCChHHHHHh
Q 015891 145 LIG--KRYLIVLDDFE---DMEVCKH----LSKVLPRGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 145 l~~--k~~LlVLDdv~---~~~~~~~----l~~~l~~~~gs~IIiTTR~~~v~~~~ 191 (398)
+.. ++.|+++|++. |...... +...+....++.+|++||+.++...+
T Consensus 73 l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 73 LKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLA 128 (185)
T ss_pred HHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHh
Confidence 655 89999999997 3322111 11222222478899999999877654
No 459
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.10 E-value=9.1e-05 Score=63.10 Aligned_cols=138 Identities=19% Similarity=0.201 Sum_probs=76.9
Q ss_pred cchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCC---CC---------------ccccceEEEEecC
Q 015891 42 GFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPD---VK---------------TQFVPRIWVCTMS 103 (398)
Q Consensus 42 GR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~---~~---------------~~F~~~~~v~~v~ 103 (398)
|-+...+.|..++.. ..-...+.++|+.|+||+++|..+++... .. .......|+....
T Consensus 1 gq~~~~~~L~~~~~~---~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~ 77 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS---GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDK 77 (162)
T ss_dssp S-HHHHHHHHHHHHC---TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTT
T ss_pred CcHHHHHHHHHHHHc---CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccc
Confidence 456667777777753 23455789999999999999999965411 11 1122333443111
Q ss_pred C--cccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC--CHHHHHHHHhHcC-CCCCCEE
Q 015891 104 G--QKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLP-RGYGERL 178 (398)
Q Consensus 104 ~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~-~~~gs~I 178 (398)
. .... +.++++...+..... .++.-++|+||++ +.+....|...+- ...++.+
T Consensus 78 ~~~~i~i-~~ir~i~~~~~~~~~---------------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 78 KKKSIKI-DQIREIIEFLSLSPS---------------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp SSSSBSH-HHHHHHHHHCTSS-T---------------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred ccchhhH-HHHHHHHHHHHHHHh---------------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 1 1112 222233333322211 1346799999999 4566677777764 3457888
Q ss_pred EEEeCChH-HHHHhcCCCceEEcCCCC
Q 015891 179 IITSRNEK-LTTEMVGEENLHQLQPLS 204 (398)
Q Consensus 179 IiTTR~~~-v~~~~~~~~~~~~l~~L~ 204 (398)
|++|++.+ +...+......+.+.+|+
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEECChHHChHHHHhhceEEecCCCC
Confidence 88887754 666666777888888875
No 460
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.10 E-value=2e-05 Score=84.25 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=84.6
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCC---CCcccc-ceEEEEecCCcccHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPD---VKTQFV-PRIWVCTMSGQKTAESIVK 113 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~---~~~~F~-~~~~v~~v~~~~~~~~~~~ 113 (398)
++++||+++++++.+.|.. ....-+.|+|++|+|||++|..++.... +..... ..+|.-++ ..
T Consensus 179 ~~~igr~~ei~~~~~~L~r----~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~------~~--- 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGR----RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI------GL--- 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHcc----cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH------HH---
Confidence 5689999999999999965 2344567999999999999999987611 111111 23332211 11
Q ss_pred HHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----------HHHHHHHhHcCCCCCCEEEEEeC
Q 015891 114 RILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----------EVCKHLSKVLPRGYGERLIITSR 183 (398)
Q Consensus 114 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----------~~~~~l~~~l~~~~gs~IIiTTR 183 (398)
++. +... ...-.+.+...+......++.+|++|+++.. +..+.|.+.+..+ .-++|.+|.
T Consensus 246 -l~a--g~~~------~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt 315 (821)
T CHL00095 246 -LLA--GTKY------RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATT 315 (821)
T ss_pred -Hhc--cCCC------ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCC
Confidence 110 1000 0011222233333333456899999999722 2344555555433 345555555
Q ss_pred ChHHHH------HhcCCCceEEcCCCCChhHHHHHHH
Q 015891 184 NEKLTT------EMVGEENLHQLQPLSDQESCWLIYR 214 (398)
Q Consensus 184 ~~~v~~------~~~~~~~~~~l~~L~~~e~~~~l~~ 214 (398)
...... .+......+.+.+.+. ++...+++
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~-~e~~aILr 351 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSV-EETIEILF 351 (821)
T ss_pred HHHHHHHHhcCHHHHhcceEEecCCCCH-HHHHHHHH
Confidence 443321 1222345678887776 44555554
No 461
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.10 E-value=4.2e-05 Score=78.34 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=40.4
Q ss_pred CCcccchhhHHHHHHHHhccC-CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRG-TDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~-~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
++++|-+..++.+..++.... .....++++|+|++|+||||+++.++..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999987521 1233467999999999999999999886
No 462
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=3.8e-05 Score=70.55 Aligned_cols=135 Identities=19% Similarity=0.298 Sum_probs=78.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCC--CccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDV--KTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV 140 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~--~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~ 140 (398)
.+.+.++||+|.|||+|+++++++..+ .+.|.....+. + +...++......- ..-...+...
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE-i----nshsLFSKWFsES-----------gKlV~kmF~k 240 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE-I----NSHSLFSKWFSES-----------GKLVAKMFQK 240 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE-E----ehhHHHHHHHhhh-----------hhHHHHHHHH
Confidence 689999999999999999999998543 34555555555 3 3344555544422 1334555666
Q ss_pred HHHHHhCCC--cEEEecCCCCHH--------------HH---HHHHhHc---CCCCCCEEEEEeCC-hHHHH-H-hcCCC
Q 015891 141 LQQQLIGKR--YLIVLDDFEDME--------------VC---KHLSKVL---PRGYGERLIITSRN-EKLTT-E-MVGEE 195 (398)
Q Consensus 141 l~~~l~~k~--~LlVLDdv~~~~--------------~~---~~l~~~l---~~~~gs~IIiTTR~-~~v~~-~-~~~~~ 195 (398)
+.+.+.++. +++++|+|.+.. .. ..+...+ ...++ .+|+||.+ .+-.. . +..++
T Consensus 241 I~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~N-vliL~TSNl~~siD~AfVDRAD 319 (423)
T KOG0744|consen 241 IQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPN-VLILATSNLTDSIDVAFVDRAD 319 (423)
T ss_pred HHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCC-EEEEeccchHHHHHHHhhhHhh
Confidence 777776665 467789998541 11 1222222 12334 45555544 22111 1 12346
Q ss_pred ceEEcCCCCChhHHHHHHHh
Q 015891 196 NLHQLQPLSDQESCWLIYRD 215 (398)
Q Consensus 196 ~~~~l~~L~~~e~~~~l~~~ 215 (398)
....++|-+. ++...+++.
T Consensus 320 i~~yVG~Pt~-~ai~~Ilks 338 (423)
T KOG0744|consen 320 IVFYVGPPTA-EAIYEILKS 338 (423)
T ss_pred heeecCCccH-HHHHHHHHH
Confidence 6778888777 666666554
No 463
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.08 E-value=1.7e-05 Score=69.96 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=65.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHH-HHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHH
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAE-SIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQ 142 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 142 (398)
..+.|.|+.|+||||++..+... +.......++.. ..+.... .-...+..+-. . ..........++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~--e~~~E~~~~~~~~~i~q~~--------v-g~~~~~~~~~i~ 68 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI--EDPIEFVHESKRSLINQRE--------V-GLDTLSFENALK 68 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE--cCCccccccCccceeeecc--------c-CCCccCHHHHHH
Confidence 47899999999999999988776 333333333322 1111100 00000000000 0 011223355678
Q ss_pred HHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891 143 QQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 143 ~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~ 190 (398)
..++..+-++++|++.+.+......... ..|..++.|+|..+....
T Consensus 69 ~aLr~~pd~ii~gEird~e~~~~~l~~a--~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 69 AALRQDPDVILVGEMRDLETIRLALTAA--ETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred HHhcCCcCEEEEcCCCCHHHHHHHHHHH--HcCCEEEEEecCCcHHHH
Confidence 8888889999999999876555433332 246679999998876654
No 464
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=4e-06 Score=79.66 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=62.1
Q ss_pred HHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHH---HHhHcCCCCCCEEEEEeCChHH
Q 015891 113 KRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKH---LSKVLPRGYGERLIITSRNEKL 187 (398)
Q Consensus 113 ~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~---l~~~l~~~~gs~IIiTTR~~~v 187 (398)
+.|+..||+... ..+....+++-+.+..++++|--.+.||.||++.+.-.+.. |-.++ .+..-+++|.||+..+
T Consensus 393 RRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYL-QgWkKTLLIVSHDQgF 471 (807)
T KOG0066|consen 393 RRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYL-QGWKKTLLIVSHDQGF 471 (807)
T ss_pred HHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHH-hhhhheeEEEecccch
Confidence 445566665543 12222357777888899999999999999999995422221 11222 2345679999999998
Q ss_pred HHHhcCCCceEEcCCCCChhHHHHHHHhh
Q 015891 188 TTEMVGEENLHQLQPLSDQESCWLIYRDS 216 (398)
Q Consensus 188 ~~~~~~~~~~~~l~~L~~~e~~~~l~~~~ 216 (398)
+..+|.....+.-+.|-....-..+|++.
T Consensus 472 LD~VCtdIIHLD~qkLhyYrGNY~~FKKm 500 (807)
T KOG0066|consen 472 LDSVCTDIIHLDNQKLHYYRGNYTLFKKM 500 (807)
T ss_pred HHHHHHHHhhhhhhhhhhhcchHHHHHHH
Confidence 88765432222222333333345566553
No 465
>PLN03232 ABC transporter C family member; Provisional
Probab=98.08 E-value=3.5e-05 Score=87.41 Aligned_cols=68 Identities=10% Similarity=0.107 Sum_probs=51.2
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..+++++++-.+++++-.++-+|||||++ |.+..+.+...+. ..+++++|+++|..+....+ ++++.+
T Consensus 1371 ~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~---DrIlVL 1442 (1495)
T PLN03232 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDC---DKILVL 1442 (1495)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhC---CEEEEE
Confidence 47889999999999999999999999999 4455555555554 33578899999887665543 455554
No 466
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.08 E-value=3.1e-05 Score=81.80 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=66.3
Q ss_pred CCcccchhhHHHHHHHHhccC-----CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRG-----TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIV 112 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~-----~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~ 112 (398)
..++|.+..++.|...+.... .......+.++|++|+|||+||+.++.. .. ...+.++ ++.-... ..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l~---~~~~~~d-~se~~~~-~~- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--LG---VHLERFD-MSEYMEK-HT- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--hc---CCeEEEe-Cchhhhc-cc-
Confidence 568999999999888877410 1123456899999999999999999887 32 2233443 3321110 01
Q ss_pred HHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCC-CcEEEecCCC--CHHHHHHHHhHcC
Q 015891 113 KRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGK-RYLIVLDDFE--DMEVCKHLSKVLP 171 (398)
Q Consensus 113 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVLDdv~--~~~~~~~l~~~l~ 171 (398)
+...+|-..... ....+ ..+...+..+ ..+++||+++ +.+..+.|...+.
T Consensus 526 --~~~lig~~~gyv---g~~~~----~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 526 --VSRLIGAPPGYV---GFEQG----GLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred --HHHHhcCCCCCc---ccchh----hHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 111122211100 00111 1233444444 4599999999 5566666665554
No 467
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.07 E-value=5.9e-05 Score=70.87 Aligned_cols=115 Identities=22% Similarity=0.372 Sum_probs=80.7
Q ss_pred CCcccchhhHHHHHHHHhccCCCC-CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDD-QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL 116 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~-~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il 116 (398)
+.+.+|+..+..+..++.. .+. -+..|.|+|-.|.|||.+.+++++.. . ...+|++ +-..++...++..|+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~--~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n-~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGN--NSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLN-CVECFTYAILLEKIL 77 (438)
T ss_pred cCccchHHHHHHHHHHhCC--CCcccceeEEEeccCCCchhHHHHHHHhhc--C---Ccceeee-hHHhccHHHHHHHHH
Confidence 5688999999999999976 333 46677999999999999999999983 2 2357988 888899999999999
Q ss_pred HHcCCCCCCCCCcCC--CchHHHHHHHHH--HHh--CCCcEEEecCCCCH
Q 015891 117 KRLGVDDGTTNSFEG--QGLAFLDYVLQQ--QLI--GKRYLIVLDDFEDM 160 (398)
Q Consensus 117 ~~l~~~~~~~~~~~~--~~~~~~~~~l~~--~l~--~k~~LlVLDdv~~~ 160 (398)
.+++..+......+. .........+.+ ... ++.++||||+++..
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l 127 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL 127 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh
Confidence 998743322211111 111222222222 111 35899999999844
No 468
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.07 E-value=2.5e-05 Score=83.49 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=39.1
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
++++||+.++.++.+.|.. .....+.++|++|+|||+||+.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r----~~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhc----CCcCceEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999999965 34556779999999999999999887
No 469
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.07 E-value=5.9e-06 Score=74.18 Aligned_cols=123 Identities=16% Similarity=0.076 Sum_probs=69.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV 140 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~ 140 (398)
...+++.|+|++|.||||+.+.+..- .-.+...+++. ... ........++..++..+... ...+........
T Consensus 28 ~~~~~~~l~G~n~~GKstll~~i~~~---~~la~~g~~vp-a~~--~~~~~~~~il~~~~l~d~~~--~~lS~~~~e~~~ 99 (222)
T cd03285 28 GKSRFLIITGPNMGGKSTYIRQIGVI---VLMAQIGCFVP-CDS--ADIPIVDCILARVGASDSQL--KGVSTFMAEMLE 99 (222)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHH---HHHHHhCCCcC-ccc--EEEeccceeEeeeccccchh--cCcChHHHHHHH
Confidence 35679999999999999999987532 00111112222 110 11112334444455443221 124556666666
Q ss_pred HHHHH--hCCCcEEEecCC---CCH---HHH-HHHHhHcCCCCCCEEEEEeCChHHHHHh
Q 015891 141 LQQQL--IGKRYLIVLDDF---EDM---EVC-KHLSKVLPRGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 141 l~~~l--~~k~~LlVLDdv---~~~---~~~-~~l~~~l~~~~gs~IIiTTR~~~v~~~~ 191 (398)
+...+ ..++-|++||++ ++. ... ..+...+....++.+|+|||..++...+
T Consensus 100 ~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~ 159 (222)
T cd03285 100 TAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALA 159 (222)
T ss_pred HHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHh
Confidence 76777 568999999999 533 111 1111222223478999999987776644
No 470
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.06 E-value=0.00012 Score=70.72 Aligned_cols=141 Identities=18% Similarity=0.265 Sum_probs=86.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL 141 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l 141 (398)
....+.|||+.|.|||.|++++.+. ..........+. ++ .......++..+... ....+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y-~~----se~f~~~~v~a~~~~--------------~~~~F 170 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVY-LT----SEDFTNDFVKALRDN--------------EMEKF 170 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEe-cc----HHHHHHHHHHHHHhh--------------hHHHH
Confidence 5788999999999999999999987 444444322332 22 223333333332111 12345
Q ss_pred HHHHhCCCcEEEecCCCC----HHHHHHHHhHcC--CCCCCEEEEEeCCh---------HHHHHhcCCCceEEcCCCCCh
Q 015891 142 QQQLIGKRYLIVLDDFED----MEVCKHLSKVLP--RGYGERLIITSRNE---------KLTTEMVGEENLHQLQPLSDQ 206 (398)
Q Consensus 142 ~~~l~~k~~LlVLDdv~~----~~~~~~l~~~l~--~~~gs~IIiTTR~~---------~v~~~~~~~~~~~~l~~L~~~ 206 (398)
++.. .--++++||++- ..+.+.+...+. ...|..||+|++.. .+.+.+ ....++++.|++.
T Consensus 171 k~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~-~~Gl~~~I~~Pd~- 246 (408)
T COG0593 171 KEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRL-EWGLVVEIEPPDD- 246 (408)
T ss_pred HHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHH-hceeEEeeCCCCH-
Confidence 5555 456999999983 233445555554 34455899999643 344444 4467899999998
Q ss_pred hHHHHHHHhhhCCCCCcchHH
Q 015891 207 ESCWLIYRDSVRDKDAQLKSQ 227 (398)
Q Consensus 207 e~~~~l~~~~~~~~~~~~~~~ 227 (398)
+....++.+.+.......+++
T Consensus 247 e~r~aiL~kka~~~~~~i~~e 267 (408)
T COG0593 247 ETRLAILRKKAEDRGIEIPDE 267 (408)
T ss_pred HHHHHHHHHHHHhcCCCCCHH
Confidence 666666666554444444443
No 471
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.05 E-value=4.9e-05 Score=65.99 Aligned_cols=132 Identities=14% Similarity=0.130 Sum_probs=79.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-------------------------------ccccceEEE----Eec----
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-------------------------------TQFVPRIWV----CTM---- 102 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-------------------------------~~F~~~~~v----~~v---- 102 (398)
.-.+++|+||+|.|||||.+.+.....-. -.|...+|- ..+
T Consensus 26 pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~ 105 (259)
T COG4559 26 PGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS 105 (259)
T ss_pred CCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence 45689999999999999999996542100 012211110 000
Q ss_pred -CCcccHHHHHHHHHHHcCCCCCCCCCc-CCCchHHHHHHHHHHHhC------CCcEEEecCCCCH----HHHHHHHhHc
Q 015891 103 -SGQKTAESIVKRILKRLGVDDGTTNSF-EGQGLAFLDYVLQQQLIG------KRYLIVLDDFEDM----EVCKHLSKVL 170 (398)
Q Consensus 103 -~~~~~~~~~~~~il~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~------k~~LlVLDdv~~~----~~~~~l~~~l 170 (398)
++......+....+...+...-..... ..+++++++..+.+.|.+ .+-.++||++.+. .+...+.-..
T Consensus 106 g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR 185 (259)
T COG4559 106 GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185 (259)
T ss_pred CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence 011123345666666655544332222 378999999999999965 2347899999943 2222222111
Q ss_pred C-CCCCCEEEEEeCChHHHHHhcC
Q 015891 171 P-RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 171 ~-~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
. ...|+-|+++-||-+++..+++
T Consensus 186 ~la~~g~~V~~VLHDLNLAA~YaD 209 (259)
T COG4559 186 QLAREGGAVLAVLHDLNLAAQYAD 209 (259)
T ss_pred HHHhcCCcEEEEEccchHHHHhhh
Confidence 1 2346889999999999888643
No 472
>PLN03130 ABC transporter C family member; Provisional
Probab=98.05 E-value=3.2e-05 Score=88.06 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=51.3
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..+.+++++-.+++++-.++-+||||+++ |.+..+.+...+. ...++++|+++|..+....+ ++++.+
T Consensus 1374 nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~---DrIlVL 1445 (1622)
T PLN03130 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC---DRILVL 1445 (1622)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhC---CEEEEE
Confidence 47889999999999999999999999999 4455555555554 33578999999887766553 444444
No 473
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.04 E-value=3e-05 Score=68.60 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIF 84 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~ 84 (398)
.++++|.|++|+|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3789999999999999999987
No 474
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.04 E-value=5.8e-05 Score=61.86 Aligned_cols=135 Identities=15% Similarity=0.231 Sum_probs=80.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc--eEEEEecC---------------------------Cc-------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP--RIWVCTMS---------------------------GQ------- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~~v~~v~---------------------------~~------- 105 (398)
+-.+|.|.||+|+|||||..-+... ....|++ .+|+..-. ++
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~--La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~ 104 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGA--LAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPA 104 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhh--cccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCc
Confidence 4568999999999999999988766 4444443 55554100 00
Q ss_pred ----ccHHHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH---HHHHHHHhHc-C--CCC
Q 015891 106 ----KTAESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM---EVCKHLSKVL-P--RGY 174 (398)
Q Consensus 106 ----~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~---~~~~~l~~~l-~--~~~ 174 (398)
....+.....+...++..... .+...+++++.+..+.+.|-..+.+++||++.+. ...+.++... . ...
T Consensus 105 ~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~a 184 (213)
T COG4136 105 TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAA 184 (213)
T ss_pred ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 012233344555566554322 2334788999999999999999999999999854 2122222221 1 234
Q ss_pred CCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 175 GERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
|--.|..|||.+-.. ...+++++.
T Consensus 185 giPtv~VTHD~~Dvp---agsrVie~~ 208 (213)
T COG4136 185 GIPTVQVTHDLQDVP---AGSRVIEMA 208 (213)
T ss_pred CCCeEEEecccccCC---CCCeeeeee
Confidence 555666677653221 224556553
No 475
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.04 E-value=1.2e-05 Score=71.18 Aligned_cols=122 Identities=15% Similarity=0.096 Sum_probs=61.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL 141 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l 141 (398)
...+++|.|++|.||||+++.+.... -.....+++. .. ...-.....+...++..+...... +....-...+
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~---~la~~G~~vp-a~--~~~l~~~d~I~~~~~~~d~~~~~~--S~fs~e~~~~ 99 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLA---IMAQIGCFVP-AE--YATLPIFNRLLSRLSNDDSMERNL--STFASEMSET 99 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH---HHHHcCCCcc-hh--hcCccChhheeEecCCccccchhh--hHHHHHHHHH
Confidence 34889999999999999999885431 0000111111 00 000022233333333332111111 1111111112
Q ss_pred HHH--HhCCCcEEEecCCC---CHHH-H---HHHHhHcCCCCCCEEEEEeCChHHHHHhc
Q 015891 142 QQQ--LIGKRYLIVLDDFE---DMEV-C---KHLSKVLPRGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 142 ~~~--l~~k~~LlVLDdv~---~~~~-~---~~l~~~l~~~~gs~IIiTTR~~~v~~~~~ 192 (398)
... +..++.|+++|++. +... . ..+...+. ..++.+|++||+.+++..+.
T Consensus 100 ~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~-~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 100 AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI-KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECChHHHHHHhh
Confidence 222 34678999999984 3321 1 11122222 34889999999999887753
No 476
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.03 E-value=7.3e-05 Score=64.73 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=42.2
Q ss_pred CCchHHHHHHHHHHHh----CCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHH
Q 015891 131 GQGLAFLDYVLQQQLI----GKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 131 ~~~~~~~~~~l~~~l~----~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~ 190 (398)
.+.++.++..+.+.+. .++-++++|++. |....+.+...+. ...|..+|++||+.+....
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~ 163 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFEN 163 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 5778888888888874 578899999998 4433333333332 2236789999999877653
No 477
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.5e-05 Score=77.86 Aligned_cols=130 Identities=16% Similarity=0.177 Sum_probs=79.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCC---------------CCc--cccceEEEEe--------cC------CcccHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPD---------------VKT--QFVPRIWVCT--------MS------GQKTAES 110 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~---------------~~~--~F~~~~~v~~--------v~------~~~~~~~ 110 (398)
.-.-|+|+|.+|+|||||++.+...-. +.. -++...|+.. +. ......+
T Consensus 363 ~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDE 442 (573)
T COG4987 363 QGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDE 442 (573)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHH
Confidence 345789999999999999999974310 011 1112222220 00 1112234
Q ss_pred HHHHHHHHcCCCCC------------CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH-cCCCC
Q 015891 111 IVKRILKRLGVDDG------------TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV-LPRGY 174 (398)
Q Consensus 111 ~~~~il~~l~~~~~------------~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~-l~~~~ 174 (398)
-+..++++.++.+- .......+++++++-.+.+.+-+...+++||+++ |....+.+... +....
T Consensus 443 el~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~ 522 (573)
T COG4987 443 ELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE 522 (573)
T ss_pred HHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc
Confidence 45566666654321 1112237889999999999999999999999999 44333333333 33556
Q ss_pred CCEEEEEeCChHHHHHh
Q 015891 175 GERLIITSRNEKLTTEM 191 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~ 191 (398)
+-++|+.||.-.-...|
T Consensus 523 ~kTll~vTHrL~~le~~ 539 (573)
T COG4987 523 GKTLLMVTHRLRGLERM 539 (573)
T ss_pred CCeEEEEecccccHhhc
Confidence 77888888876555554
No 478
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.03 E-value=2.9e-05 Score=75.74 Aligned_cols=108 Identities=17% Similarity=0.138 Sum_probs=69.5
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
.++++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.......|..+.|+. +++..+....+..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt-FHpsySYeDFI~G~-- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ-FHQSYSYEDFIQGY-- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhc------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe-ecccccHHHHhccc--
Confidence 5688889999999988864 46788899999999999999988743344566777888 88777755544322
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHHh--CCCcEEEecCCCCH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQLI--GKRYLIVLDDFEDM 160 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~ 160 (398)
.+... ......+ -....+.++.. .++++||+|++...
T Consensus 246 ----rP~~v-gy~~~~G-~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 246 ----RPNGV-GFRRKDG-IFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred ----CCCCC-CeEecCc-hHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 11000 0000011 11122233332 46899999999943
No 479
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=1.4e-05 Score=76.09 Aligned_cols=129 Identities=25% Similarity=0.359 Sum_probs=80.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCC------CccccceEEEEe-----cCCcccHHHH-----------HHHHHHH
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDV------KTQFVPRIWVCT-----MSGQKTAESI-----------VKRILKR 118 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~------~~~F~~~~~v~~-----v~~~~~~~~~-----------~~~il~~ 118 (398)
+--+.|+|+||+|+|||||.+.+.....- +.+--.+-|+.. +....+.... .+.-+..
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~ 690 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGT 690 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhh
Confidence 45678999999999999999999765211 111111223321 0111112221 2233334
Q ss_pred cCCCCCC--CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891 119 LGVDDGT--TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 119 l~~~~~~--~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~ 190 (398)
+|+.... ....+.++++..+..++....+.+-+||||++. +.+.++.|...+..-.| -||+.||+..+...
T Consensus 691 fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~G-gVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 691 FGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNG-GVIMVSHDERLIVE 766 (807)
T ss_pred hhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccC-cEEEEecccceeee
Confidence 4443321 122347888888999999989999999999999 45777777777753333 47788888876654
No 480
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.02 E-value=3.6e-05 Score=86.52 Aligned_cols=154 Identities=15% Similarity=0.155 Sum_probs=90.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE-------------EEecCCc------cc---------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW-------------VCTMSGQ------KT--------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~-------------v~~v~~~------~~--------------- 107 (398)
.-.+++|.|++|+|||||++.+...........+.++ +.++.+. .+
T Consensus 788 ~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~ 867 (1394)
T TIGR00956 788 PGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPK 867 (1394)
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCC
Confidence 3458999999999999999999876320000111111 1112211 00
Q ss_pred ------HHHHHHHHHHHcCCCCCCCCCc-----CCCchHHHHHHHHHHHhCCC-cEEEecCCC---CHHHHHHHHhHcC-
Q 015891 108 ------AESIVKRILKRLGVDDGTTNSF-----EGQGLAFLDYVLQQQLIGKR-YLIVLDDFE---DMEVCKHLSKVLP- 171 (398)
Q Consensus 108 ------~~~~~~~il~~l~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~k~-~LlVLDdv~---~~~~~~~l~~~l~- 171 (398)
..+...++++.+++........ ..+.+++++..+...|..++ .+|+||++. |......+...+.
T Consensus 868 ~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~ 947 (1394)
T TIGR00956 868 SVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRK 947 (1394)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 1123456777777754322211 47889999999999999999 599999999 3333333333332
Q ss_pred -CCCCCEEEEEeCChHHH--HHhc-----CCC-ceEEcCCCCCh-hHHHHHHHh
Q 015891 172 -RGYGERLIITSRNEKLT--TEMV-----GEE-NLHQLQPLSDQ-ESCWLIYRD 215 (398)
Q Consensus 172 -~~~gs~IIiTTR~~~v~--~~~~-----~~~-~~~~l~~L~~~-e~~~~l~~~ 215 (398)
...|..||+|||+.... ..+. ... ++...++.... +.+..+|..
T Consensus 948 la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~ 1001 (1394)
T TIGR00956 948 LADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEK 1001 (1394)
T ss_pred HHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHh
Confidence 23478999999997632 2221 112 45555555431 346677765
No 481
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.02 E-value=0.00083 Score=63.76 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=85.9
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHH
Q 015891 60 DDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDY 139 (398)
Q Consensus 60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~ 139 (398)
-..++.++|||++|+|||.+|+++++. ....| +-++ .+ ++.... .......++.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~e--lg~~~---i~vs-a~----------eL~sk~----------vGEsEk~IR~ 198 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKK--MGIEP---IVMS-AG----------ELESEN----------AGEPGKLIRQ 198 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHH--cCCCe---EEEE-HH----------HhhcCc----------CCcHHHHHHH
Confidence 356889999999999999999999998 43333 1222 11 111100 0122222333
Q ss_pred HHHHHH-----hCCCcEEEecCCCCH------------HHH--HHHHhHc---------------CCCCCCEEEEEeCCh
Q 015891 140 VLQQQL-----IGKRYLIVLDDFEDM------------EVC--KHLSKVL---------------PRGYGERLIITSRNE 185 (398)
Q Consensus 140 ~l~~~l-----~~k~~LlVLDdv~~~------------~~~--~~l~~~l---------------~~~~gs~IIiTTR~~ 185 (398)
.+..+- ..++++|++||++.. .+. ..|...+ ....+..||+||.+.
T Consensus 199 ~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrp 278 (413)
T PLN00020 199 RYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDF 278 (413)
T ss_pred HHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCc
Confidence 333222 357999999999821 111 1122111 123456788888776
Q ss_pred HHHHH-hcC--C-CceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891 186 KLTTE-MVG--E-ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED 245 (398)
Q Consensus 186 ~v~~~-~~~--~-~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 245 (398)
+.+.. +.. . +..| .++..++...+++..+...+.. .....+|++.+.|-|+.
T Consensus 279 d~LDpALlRpGRfDk~i---~lPd~e~R~eIL~~~~r~~~l~-----~~dv~~Lv~~f~gq~~D 334 (413)
T PLN00020 279 STLYAPLIRDGRMEKFY---WAPTREDRIGVVHGIFRDDGVS-----REDVVKLVDTFPGQPLD 334 (413)
T ss_pred ccCCHhHcCCCCCCcee---CCCCHHHHHHHHHHHhccCCCC-----HHHHHHHHHcCCCCCch
Confidence 54322 111 1 3333 3566677778887777665432 24677788888888864
No 482
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.02 E-value=4.6e-06 Score=87.76 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=29.3
Q ss_pred CCCcEEEecCCC---CHHHHHHHH-hHcC--CCCCCEEEEEeCChHHHHH
Q 015891 147 GKRYLIVLDDFE---DMEVCKHLS-KVLP--RGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 147 ~k~~LlVLDdv~---~~~~~~~l~-~~l~--~~~gs~IIiTTR~~~v~~~ 190 (398)
.++.|+++|++. |......+. ..+. ...|+.+|+|||+..+...
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 478999999998 343333332 1221 2358899999999887654
No 483
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.02 E-value=0.00011 Score=77.68 Aligned_cols=177 Identities=16% Similarity=0.241 Sum_probs=99.7
Q ss_pred CCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891 38 ANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA 108 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~ 108 (398)
.++.|.+...+.|.+.+... ..-...+-+.++|++|+|||+||+++++. ....| +. +...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~-v~~~--- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IA-VRGP--- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EE-EehH---
Confidence 56788888888887766420 01234566899999999999999999987 33333 22 2211
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH--------------HHHHHHHhHcC---
Q 015891 109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM--------------EVCKHLSKVLP--- 171 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--------------~~~~~l~~~l~--- 171 (398)
+++... -......+...+...-...+.+|+||+++.. .....+...+.
T Consensus 522 -----~l~~~~----------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~ 586 (733)
T TIGR01243 522 -----EILSKW----------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ 586 (733)
T ss_pred -----HHhhcc----------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc
Confidence 111110 0112223344455555667899999998632 11122222232
Q ss_pred CCCCCEEEEEeCChHHHHHh-c---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891 172 RGYGERLIITSRNEKLTTEM-V---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED 245 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 245 (398)
...+..||.||...+..... . ..+..+.+++.+. ++...+|+..........+. ....+++.+.|..-|
T Consensus 587 ~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~-~~R~~i~~~~~~~~~~~~~~----~l~~la~~t~g~sga 659 (733)
T TIGR01243 587 ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE-EARKEIFKIHTRSMPLAEDV----DLEELAEMTEGYTGA 659 (733)
T ss_pred CCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH-HHHHHHHHHHhcCCCCCccC----CHHHHHHHcCCCCHH
Confidence 22355677777666544321 1 2366788866665 77777877554332211111 356677778876643
No 484
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.02 E-value=1.4e-05 Score=76.59 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=79.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCC-CCccccceEEEEe----c--CCcccHHHHHHHHHH--------------HcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPD-VKTQFVPRIWVCT----M--SGQKTAESIVKRILK--------------RLG 120 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~~v~~----v--~~~~~~~~~~~~il~--------------~l~ 120 (398)
..-++++.|++|+||||+++.++.-.. .... ...+-+++ + ..+.+...++..... -|.
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~ 444 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLN 444 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccc
Confidence 467999999999999999999985411 0111 11111110 1 112233444433333 333
Q ss_pred CCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcC
Q 015891 121 VDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 121 ~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
+..- +..-.++++++-++..++..|....-|.+||++. |.++.-.....++ .+.+...+|.-||--+...+.+
T Consensus 445 l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsD 524 (591)
T COG1245 445 LEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSD 524 (591)
T ss_pred hHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhc
Confidence 3221 1222347889999999999999999999999998 4444333333332 3456778888998877766543
No 485
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.01 E-value=8e-05 Score=76.66 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=46.0
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
...+++++++-.+++++-.++-++||||+. |.+....+...+. ...+.++|+.+|....... .++++.++
T Consensus 464 ~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~---aD~IiVl~ 537 (567)
T COG1132 464 VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN---ADRIIVLD 537 (567)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh---CCEEEEEE
Confidence 347889999999999999999999999999 4444444444442 1233355556665544443 34555553
No 486
>PRK08116 hypothetical protein; Validated
Probab=98.01 E-value=3e-05 Score=71.69 Aligned_cols=102 Identities=21% Similarity=0.263 Sum_probs=57.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQ 142 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 142 (398)
...+.|+|.+|+|||.||.++++. +......+++++ ...++..+...+..... .. ...+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~-------~~~ll~~i~~~~~~~~~-------~~----~~~~~ 173 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN-------FPQLLNRIKSTYKSSGK-------ED----ENEII 173 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE-------HHHHHHHHHHHHhcccc-------cc----HHHHH
Confidence 346899999999999999999997 333323345554 33344444443321110 11 11233
Q ss_pred HHHhCCCcEEEecCCC----CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891 143 QQLIGKRYLIVLDDFE----DMEVCKHLSKVLP--RGYGERLIITSRNE 185 (398)
Q Consensus 143 ~~l~~k~~LlVLDdv~----~~~~~~~l~~~l~--~~~gs~IIiTTR~~ 185 (398)
+.+. ..-||||||+. +....+.+...+. ...+..+||||...
T Consensus 174 ~~l~-~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 174 RSLV-NADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred HHhc-CCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3333 33599999994 2222233433443 23466788888643
No 487
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.00 E-value=8.2e-06 Score=72.27 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHc
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
.+++|+|++|+|||||++.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7899999999999999999973
No 488
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.00 E-value=3.3e-05 Score=82.80 Aligned_cols=45 Identities=24% Similarity=0.306 Sum_probs=38.7
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
++++||+.++.++.+.|.. .....+.++|++|+|||+++..+++.
T Consensus 173 ~~~igr~~ei~~~~~~l~r----~~~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSR----RTKNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhc----CCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 5699999999999999965 34455668999999999999999877
No 489
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.99 E-value=5.4e-05 Score=79.41 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=38.2
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
++++||++++.++.+.|.. ....-+.|+|++|+|||++|+.+++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r----~~~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCR----RRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhc----cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999998875 23345578999999999999999875
No 490
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.99 E-value=4.2e-05 Score=86.68 Aligned_cols=133 Identities=14% Similarity=0.197 Sum_probs=84.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEe-----------------cCCcc-----------c-----
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCT-----------------MSGQK-----------T----- 107 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~-----------------v~~~~-----------~----- 107 (398)
..-..|+|+|..|+|||||++.+++- +. ..+.++++. +.+++ +
T Consensus 1243 ~~GekvaIvGrSGsGKSTLl~lL~rl--~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~ 1318 (1490)
T TIGR01271 1243 EGGQRVGLLGRTGSGKSTLLSALLRL--LS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQW 1318 (1490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhh--cC--CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCC
Confidence 35668999999999999999999875 21 233333321 11110 1
Q ss_pred HHHHHHHHHHHcCCCC-----------C-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891 108 AESIVKRILKRLGVDD-----------G-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP- 171 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~-----------~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~- 171 (398)
..+-+...++..++.. . .......+.+++++-.+++++-.++-+||||++. |.+....+...+.
T Consensus 1319 tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271 1319 SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1223344444443321 0 0111236889999999999999999999999999 4455455555554
Q ss_pred CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 172 RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..++++||++||..+....+ ++++.|
T Consensus 1399 ~~~~~TvI~IaHRl~ti~~~---DrIlvL 1424 (1490)
T TIGR01271 1399 SFSNCTVILSEHRVEALLEC---QQFLVI 1424 (1490)
T ss_pred HcCCCEEEEEecCHHHHHhC---CEEEEE
Confidence 34578999999987665543 455555
No 491
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=8e-05 Score=75.52 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=40.7
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhHcC-CCCCCEEEEEeCCh
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKVLP-RGYGERLIITSRNE 185 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~-~~~gs~IIiTTR~~ 185 (398)
..+++++++..|+++|-.+|.+||||+.++ .+....+...+. ...+-+||++.|.-
T Consensus 604 qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRL 663 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRL 663 (716)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhh
Confidence 488999999999999999999999999994 344445555554 22345566555543
No 492
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.99 E-value=4.5e-05 Score=68.21 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=42.1
Q ss_pred CCCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 34 SKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 34 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.++.+.++|.+...+.|.+-...........-+.+||..|+|||+|++++.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 44557899999999888775444324456778889999999999999999876
No 493
>PLN03232 ABC transporter C family member; Provisional
Probab=97.99 E-value=0.0001 Score=83.65 Aligned_cols=129 Identities=12% Similarity=0.106 Sum_probs=76.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCc-c-ccceEEEEecCCc-----------------ccHHHHHHHHHHHcCC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-Q-FVPRIWVCTMSGQ-----------------KTAESIVKRILKRLGV 121 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-~-F~~~~~v~~v~~~-----------------~~~~~~~~~il~~l~~ 121 (398)
..-..++|+|+.|+|||||++.+........ . ....-.+.++++. .+ .+...+.++..++
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~-~e~~~~vl~~~~L 719 (1495)
T PLN03232 641 PVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFE-SERYWRAIDVTAL 719 (1495)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccC-HHHHHHHHHHhCC
Confidence 3457899999999999999999987622111 1 1101112223322 12 1223334433332
Q ss_pred CC-------C-----CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHH-HhHcC-CCCCCEEEEEeCC
Q 015891 122 DD-------G-----TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHL-SKVLP-RGYGERLIITSRN 184 (398)
Q Consensus 122 ~~-------~-----~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l-~~~l~-~~~gs~IIiTTR~ 184 (398)
.. . .......+++++++..+++++-.++-+++|||+.+ ....+.+ ...+. ..++.++|++||+
T Consensus 720 ~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~ 799 (1495)
T PLN03232 720 QHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQ 799 (1495)
T ss_pred HHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECC
Confidence 11 1 11223488999999999999999999999999993 3322222 22232 2246677778887
Q ss_pred hHHHHH
Q 015891 185 EKLTTE 190 (398)
Q Consensus 185 ~~v~~~ 190 (398)
.+....
T Consensus 800 ~~~l~~ 805 (1495)
T PLN03232 800 LHFLPL 805 (1495)
T ss_pred hhhHHh
Confidence 766554
No 494
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.99 E-value=1.7e-05 Score=75.11 Aligned_cols=130 Identities=21% Similarity=0.293 Sum_probs=79.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc--cccc---eEEE-----Ee-cC----Cccc-------------HHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT--QFVP---RIWV-----CT-MS----GQKT-------------AESIVK 113 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~---~~~v-----~~-v~----~~~~-------------~~~~~~ 113 (398)
.--++.|+|.+|+||||+.+++........ .|.. .+-+ .. +. ..++ ......
T Consensus 408 pGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Av 487 (593)
T COG2401 408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAV 487 (593)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHH
Confidence 345889999999999999999966521111 1111 0000 00 00 1111 112234
Q ss_pred HHHHHcCCCCCCC---CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCC
Q 015891 114 RILKRLGVDDGTT---NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRN 184 (398)
Q Consensus 114 ~il~~l~~~~~~~---~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~ 184 (398)
.+++..|+.+... ...+++.++.-+..|++.++.++-+++.|+.. |......+...+. ...|.++++.||.
T Consensus 488 eILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThr 567 (593)
T COG2401 488 EILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567 (593)
T ss_pred HHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 5666666655322 22237888889999999999999999999987 3322222222222 3468899999999
Q ss_pred hHHHHHh
Q 015891 185 EKLTTEM 191 (398)
Q Consensus 185 ~~v~~~~ 191 (398)
+++...+
T Consensus 568 pEv~~AL 574 (593)
T COG2401 568 PEVGNAL 574 (593)
T ss_pred HHHHhcc
Confidence 9988876
No 495
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.99 E-value=1.4e-05 Score=71.26 Aligned_cols=121 Identities=17% Similarity=0.262 Sum_probs=58.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHH--HHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAF--LDYV 140 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~--~~~~ 140 (398)
.+.+.|+|++|+|||||.+.+...... . ....|+. ... .. ...+.++...++........ .+.... .+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a--~~G~~v~-a~~-~~-~~~~d~i~~~l~~~~si~~~--~S~f~~el~~l~ 100 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-A--HIGSFVP-ADS-AT-IGLVDKIFTRMSSRESVSSG--QSAFMIDLYQVS 100 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-H--hCCCeeE-cCC-cE-EeeeeeeeeeeCCccChhhc--cchHHHHHHHHH
Confidence 488999999999999999998632100 0 0111111 000 00 00111111222211111000 111111 1222
Q ss_pred HHHHHhCCCcEEEecCCCC---HHH-HH----HHHhHcCCC-CCCEEEEEeCChHHHHHh
Q 015891 141 LQQQLIGKRYLIVLDDFED---MEV-CK----HLSKVLPRG-YGERLIITSRNEKLTTEM 191 (398)
Q Consensus 141 l~~~l~~k~~LlVLDdv~~---~~~-~~----~l~~~l~~~-~gs~IIiTTR~~~v~~~~ 191 (398)
+...+..++.|++||++.. ... .. .+......+ .+..+|+|||+.+++...
T Consensus 101 ~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 101 KALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 2333457899999999983 221 11 222222221 245899999999887764
No 496
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.99 E-value=0.00016 Score=64.63 Aligned_cols=179 Identities=16% Similarity=0.234 Sum_probs=98.7
Q ss_pred CCCCCCcccchhhHHH---HHHHHhcc--CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891 34 SKPPANVHGFANEELH---LQKLLSNR--GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA 108 (398)
Q Consensus 34 ~~~~~~~vGR~~~~~~---l~~~L~~~--~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~ 108 (398)
.+.-+++||.++.... |.+.|... -+...++-|..+|++|.|||.+|+++++. .+-.| +. +. .
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~-----l~-vk----a 184 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL-----LL-VK----A 184 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce-----EE-ec----h
Confidence 3444789998876654 55555541 13346889999999999999999999998 33222 22 11 1
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH--------------HHHHHHHhHcC---
Q 015891 109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM--------------EVCKHLSKVLP--- 171 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--------------~~~~~l~~~l~--- 171 (398)
.+++ -+..| .+..+......++-..-++++.+|+.+.. +..+.|..-+.
T Consensus 185 t~li---GehVG-----------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ 250 (368)
T COG1223 185 TELI---GEHVG-----------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK 250 (368)
T ss_pred HHHH---HHHhh-----------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc
Confidence 1111 11111 22233334444444567999999999822 33334443443
Q ss_pred CCCCCEEEEEeCChHHHHHhcCC--CceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891 172 RGYGERLIITSRNEKLTTEMVGE--ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN 243 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~v~~~~~~~--~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 243 (398)
.+.|...|-.|.+.+++...... ...++.. |+.+++..+++......-....+. ..+.++++..|++
T Consensus 251 eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~-LP~~eEr~~ile~y~k~~Plpv~~----~~~~~~~~t~g~S 319 (368)
T COG1223 251 ENEGVVTIAATNRPELLDPAIRSRFEEEIEFK-LPNDEERLEILEYYAKKFPLPVDA----DLRYLAAKTKGMS 319 (368)
T ss_pred cCCceEEEeecCChhhcCHHHHhhhhheeeee-CCChHHHHHHHHHHHHhCCCcccc----CHHHHHHHhCCCC
Confidence 34576677777776665443111 3345553 444466666666533221111111 3455666666665
No 497
>PLN03130 ABC transporter C family member; Provisional
Probab=97.98 E-value=6.3e-05 Score=85.67 Aligned_cols=130 Identities=13% Similarity=0.146 Sum_probs=77.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCc--cccceEEEEecCCc-----------------ccHHHHHHHHHHHcCC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT--QFVPRIWVCTMSGQ-----------------KTAESIVKRILKRLGV 121 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~~v~~v~~~-----------------~~~~~~~~~il~~l~~ 121 (398)
..-..++|+|+.|+|||||++.+........ .....-.+.++++. .+ .+...+.++..++
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d-~e~y~~vl~a~~L 719 (1622)
T PLN03130 641 PVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFD-PERYERAIDVTAL 719 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCccc-HHHHHHHHHHhCc
Confidence 4567899999999999999999987622111 11111112222221 22 2233344433322
Q ss_pred CC---------C---CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHH-HhHcC-CCCCCEEEEEeCC
Q 015891 122 DD---------G---TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHL-SKVLP-RGYGERLIITSRN 184 (398)
Q Consensus 122 ~~---------~---~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l-~~~l~-~~~gs~IIiTTR~ 184 (398)
.. . .......+++++++..+++++-.++-+++|||+.+ ....+.+ ...+. ..++.++|++||.
T Consensus 720 ~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~ 799 (1622)
T PLN03130 720 QHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQ 799 (1622)
T ss_pred HHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECC
Confidence 11 0 12233488999999999999999999999999993 3322222 22232 1246778888888
Q ss_pred hHHHHHh
Q 015891 185 EKLTTEM 191 (398)
Q Consensus 185 ~~v~~~~ 191 (398)
.+....+
T Consensus 800 l~~l~~a 806 (1622)
T PLN03130 800 LHFLSQV 806 (1622)
T ss_pred HhHHHhC
Confidence 7766553
No 498
>PLN03140 ABC transporter G family member; Provisional
Probab=97.98 E-value=4.6e-05 Score=85.71 Aligned_cols=154 Identities=13% Similarity=0.109 Sum_probs=91.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE--------------EEecCCc------cc--------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW--------------VCTMSGQ------KT-------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~--------------v~~v~~~------~~-------------- 107 (398)
.-.+++|.|++|+|||||++.+...... ....+.++ +.++.+. .+
T Consensus 905 ~Gel~aL~G~sGaGKTTLL~~LaG~~~~-g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~ 983 (1470)
T PLN03140 905 PGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLP 983 (1470)
T ss_pred CCeEEEEECCCCCCHHHHHHHHcCCCCC-CcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCC
Confidence 3468999999999999999999876320 00111111 1111111 00
Q ss_pred -------HHHHHHHHHHHcCCCCCCCCC------cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC
Q 015891 108 -------AESIVKRILKRLGVDDGTTNS------FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP 171 (398)
Q Consensus 108 -------~~~~~~~il~~l~~~~~~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~ 171 (398)
..+...++++.+++....... ...+++++++..+...|..++-+|+||++. |......+...+.
T Consensus 984 ~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~ 1063 (1470)
T PLN03140 984 KEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1063 (1470)
T ss_pred CCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 012245677777775422221 247899999999999999999999999999 3333333333332
Q ss_pred --CCCCCEEEEEeCChHH--HHHhc-----C-CCceEEcCCCCC-hhHHHHHHHhh
Q 015891 172 --RGYGERLIITSRNEKL--TTEMV-----G-EENLHQLQPLSD-QESCWLIYRDS 216 (398)
Q Consensus 172 --~~~gs~IIiTTR~~~v--~~~~~-----~-~~~~~~l~~L~~-~e~~~~l~~~~ 216 (398)
...|..||+|||+... ...+. . ..+++..+++.. ...+..+|...
T Consensus 1064 ~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~ 1119 (1470)
T PLN03140 1064 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAI 1119 (1470)
T ss_pred HHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhc
Confidence 2347899999999763 33221 1 123444445432 13467777764
No 499
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.98 E-value=5.4e-05 Score=63.94 Aligned_cols=119 Identities=23% Similarity=0.192 Sum_probs=59.7
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCC---CCCcCCCchHH-HHHH
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGT---TNSFEGQGLAF-LDYV 140 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~~-~~~~ 140 (398)
++.|+|++|+||||++..+... ....-..++|+. ........................ ........... ....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVD-IEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKA 77 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEE-CCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHH
Confidence 3689999999999999999876 322333456666 443322111110011111110000 00000111211 1122
Q ss_pred HHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC--CCCCCEEEEEeCChH
Q 015891 141 LQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP--RGYGERLIITSRNEK 186 (398)
Q Consensus 141 l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~--~~~gs~IIiTTR~~~ 186 (398)
.......+.-++|+|++... ...+.+..... ...+..+|+|++...
T Consensus 78 ~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 78 ERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred HHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 33444567889999999832 11233333332 234888999998764
No 500
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00018 Score=68.64 Aligned_cols=164 Identities=13% Similarity=0.116 Sum_probs=87.5
Q ss_pred Cccc-chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 39 NVHG-FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 39 ~~vG-R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
.++| -+..++.|...+.. ..-...+.++|+.|+||||+|+.+.+...-........ .....+. ..+..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~---~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~----cg~C~~c----~~~~~ 74 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAK---NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP----CGTCTNC----KRIDS 74 (329)
T ss_pred HHHhhHHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC----CCcCHHH----HHHhc
Confidence 4667 66677778887753 23466779999999999999999976511011000000 0000000 00000
Q ss_pred HcCCCCCC-C-CCcCCCchHHHHHHHHHH----HhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCCh-HH
Q 015891 118 RLGVDDGT-T-NSFEGQGLAFLDYVLQQQ----LIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRNE-KL 187 (398)
Q Consensus 118 ~l~~~~~~-~-~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~~-~v 187 (398)
-..++-. . +.......++.+..+... ..+++-++|+|+++ +....+.|...+.. ..++.+|++|.+. .+
T Consensus 75 -~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 75 -GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred -CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 0000000 0 000012233333332221 23456789999998 44566677777753 3466677777654 45
Q ss_pred HHHhcCCCceEEcCCCCChhHHHHHHHh
Q 015891 188 TTEMVGEENLHQLQPLSDQESCWLIYRD 215 (398)
Q Consensus 188 ~~~~~~~~~~~~l~~L~~~e~~~~l~~~ 215 (398)
...+......+++.+++. +.....+.+
T Consensus 154 l~TIrSRc~~i~~~~~~~-~~~~~~L~~ 180 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPP-ESLIQRLQE 180 (329)
T ss_pred cHHHHhhceeeeCCCCCH-HHHHHHHHH
Confidence 555556678999999998 545554543
Done!